Query 038250
Match_columns 444
No_of_seqs 318 out of 2766
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.1E-28 2.4E-33 274.5 30.0 287 120-425 11-313 (2102)
2 PLN03200 cellulose synthase-in 100.0 6.3E-28 1.4E-32 268.5 29.7 281 123-426 447-766 (2102)
3 KOG0166 Karyopherin (importin) 100.0 5.1E-28 1.1E-32 237.6 23.6 283 122-424 109-393 (514)
4 KOG0166 Karyopherin (importin) 100.0 8.1E-27 1.8E-31 229.2 25.0 280 126-423 70-350 (514)
5 KOG4224 Armadillo repeat prote 100.0 2.1E-27 4.5E-32 219.1 17.3 279 122-426 167-448 (550)
6 KOG4224 Armadillo repeat prote 100.0 5.2E-27 1.1E-31 216.5 19.4 275 125-425 129-406 (550)
7 COG5064 SRP1 Karyopherin (impo 100.0 1E-26 2.3E-31 212.8 20.1 292 123-430 72-404 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 7.1E-23 1.5E-27 187.8 19.2 286 118-422 153-441 (526)
9 KOG1048 Neural adherens juncti 99.9 8.8E-21 1.9E-25 192.2 16.2 304 123-444 234-615 (717)
10 PF05804 KAP: Kinesin-associat 99.8 1.3E-17 2.8E-22 173.0 26.2 255 141-423 264-519 (708)
11 KOG4199 Uncharacterized conser 99.8 3.4E-17 7.4E-22 150.5 22.2 283 138-439 119-419 (461)
12 PF05804 KAP: Kinesin-associat 99.8 2E-16 4.3E-21 164.3 26.4 218 189-426 263-481 (708)
13 KOG4199 Uncharacterized conser 99.7 1E-14 2.2E-19 134.3 24.5 280 124-424 147-444 (461)
14 PF04564 U-box: U-box domain; 99.7 1.9E-17 4E-22 123.4 5.1 72 33-105 1-72 (73)
15 KOG2122 Beta-catenin-binding p 99.7 4.1E-15 8.8E-20 157.3 18.8 277 145-431 317-608 (2195)
16 KOG1048 Neural adherens juncti 99.6 1E-14 2.3E-19 148.4 20.4 286 124-427 277-687 (717)
17 PF04826 Arm_2: Armadillo-like 99.6 6.5E-14 1.4E-18 129.7 20.4 197 164-378 8-206 (254)
18 PF04826 Arm_2: Armadillo-like 99.6 1.6E-13 3.4E-18 127.2 19.8 200 213-429 8-210 (254)
19 smart00504 Ubox Modified RING 99.6 3.7E-15 8.1E-20 108.3 4.8 63 36-100 1-63 (63)
20 KOG2122 Beta-catenin-binding p 99.5 5.7E-13 1.2E-17 141.4 14.5 231 141-380 366-604 (2195)
21 cd00020 ARM Armadillo/beta-cat 99.4 2.1E-12 4.6E-17 106.3 12.6 118 213-335 3-120 (120)
22 PF10508 Proteasom_PSMB: Prote 99.4 1.3E-10 2.9E-15 119.3 27.2 271 127-422 78-364 (503)
23 cd00020 ARM Armadillo/beta-cat 99.4 9.8E-12 2.1E-16 102.3 12.3 116 258-377 5-120 (120)
24 PF15227 zf-C3HC4_4: zinc fing 99.4 3.6E-13 7.9E-18 88.2 2.4 40 39-78 1-42 (42)
25 TIGR00599 rad18 DNA repair pro 99.3 3.2E-12 6.8E-17 124.1 6.7 81 22-104 12-92 (397)
26 KOG4500 Rho/Rac GTPase guanine 99.3 7E-10 1.5E-14 105.9 21.3 277 138-424 99-390 (604)
27 KOG4500 Rho/Rac GTPase guanine 99.3 1.4E-09 3E-14 103.8 22.6 283 126-422 227-517 (604)
28 PF10508 Proteasom_PSMB: Prote 99.2 6.3E-09 1.4E-13 107.0 27.7 284 123-425 120-421 (503)
29 PLN03208 E3 ubiquitin-protein 99.2 9.7E-12 2.1E-16 107.7 4.6 61 31-91 13-87 (193)
30 PRK09687 putative lyase; Provi 99.2 2.6E-09 5.6E-14 101.2 20.9 212 139-420 67-278 (280)
31 KOG0287 Postreplication repair 99.2 1.1E-11 2.3E-16 113.8 3.6 83 21-105 8-90 (442)
32 KOG0946 ER-Golgi vesicle-tethe 99.2 1.8E-08 3.8E-13 102.7 26.1 307 114-437 14-360 (970)
33 PF03224 V-ATPase_H_N: V-ATPas 99.1 6.7E-09 1.5E-13 100.5 21.2 254 150-418 34-308 (312)
34 PRK09687 putative lyase; Provi 99.1 5.1E-09 1.1E-13 99.2 19.2 223 124-422 25-248 (280)
35 KOG1222 Kinesin associated pro 99.1 7.7E-08 1.7E-12 93.2 24.0 259 144-425 322-664 (791)
36 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.1E-10 4.5E-15 74.3 3.0 38 39-78 1-39 (39)
37 KOG0317 Predicted E3 ubiquitin 99.0 3.1E-10 6.8E-15 102.9 5.0 82 4-87 204-288 (293)
38 KOG0823 Predicted E3 ubiquitin 99.0 2.8E-10 6.1E-15 100.3 2.9 58 34-91 45-103 (230)
39 PF14835 zf-RING_6: zf-RING of 98.9 1.6E-10 3.6E-15 80.4 0.6 60 34-97 5-65 (65)
40 KOG0168 Putative ubiquitin fus 98.9 6.5E-08 1.4E-12 99.4 19.5 208 188-406 181-392 (1051)
41 KOG1222 Kinesin associated pro 98.9 1.9E-08 4.1E-13 97.4 13.6 193 193-401 281-474 (791)
42 KOG2160 Armadillo/beta-catenin 98.9 7.1E-08 1.5E-12 91.2 16.9 186 188-378 96-283 (342)
43 PF03224 V-ATPase_H_N: V-ATPas 98.9 5E-08 1.1E-12 94.5 16.2 216 126-359 59-293 (312)
44 PF00097 zf-C3HC4: Zinc finger 98.9 1.4E-09 3.1E-14 71.3 3.4 40 39-78 1-41 (41)
45 KOG0320 Predicted E3 ubiquitin 98.9 1.9E-09 4.2E-14 90.8 4.3 55 32-88 127-183 (187)
46 PF13445 zf-RING_UBOX: RING-ty 98.9 1.2E-09 2.7E-14 71.3 2.4 37 39-76 1-43 (43)
47 KOG2160 Armadillo/beta-catenin 98.9 5.1E-07 1.1E-11 85.5 20.8 193 228-432 94-291 (342)
48 cd00256 VATPase_H VATPase_H, r 98.9 8.6E-07 1.9E-11 87.8 23.2 279 125-422 104-423 (429)
49 KOG0168 Putative ubiquitin fus 98.9 4.6E-07 1E-11 93.3 21.6 260 124-406 169-438 (1051)
50 PRK13800 putative oxidoreducta 98.9 5.5E-07 1.2E-11 99.2 24.2 89 124-244 623-711 (897)
51 COG5432 RAD18 RING-finger-cont 98.8 2.4E-09 5.2E-14 96.5 3.8 72 31-104 20-91 (391)
52 PRK13800 putative oxidoreducta 98.8 8.7E-07 1.9E-11 97.6 23.7 226 123-420 653-895 (897)
53 cd00256 VATPase_H VATPase_H, r 98.8 1.9E-06 4.1E-11 85.4 23.1 247 168-427 53-311 (429)
54 PF13920 zf-C3HC4_3: Zinc fing 98.8 5.4E-09 1.2E-13 71.7 3.0 47 35-83 1-48 (50)
55 PHA02929 N1R/p28-like protein; 98.7 1.3E-08 2.7E-13 92.5 4.1 48 34-83 172-227 (238)
56 PF13639 zf-RING_2: Ring finge 98.7 5.8E-09 1.2E-13 69.5 1.2 40 38-79 2-44 (44)
57 PF11789 zf-Nse: Zinc-finger o 98.6 1.3E-08 2.8E-13 71.1 1.3 44 36-79 11-55 (57)
58 cd00162 RING RING-finger (Real 98.6 5.3E-08 1.1E-12 64.9 3.7 43 38-81 1-44 (45)
59 COG5222 Uncharacterized conser 98.5 5.8E-08 1.3E-12 88.0 4.0 95 3-104 246-343 (427)
60 KOG2171 Karyopherin (importin) 98.5 3.5E-05 7.5E-10 82.7 24.7 286 124-426 157-506 (1075)
61 KOG4646 Uncharacterized conser 98.5 1.3E-06 2.8E-11 71.0 10.4 154 259-422 15-168 (173)
62 KOG2177 Predicted E3 ubiquitin 98.5 8.1E-08 1.8E-12 93.4 4.2 71 31-105 8-78 (386)
63 smart00184 RING Ring finger. E 98.5 1.5E-07 3.3E-12 60.5 3.8 39 39-78 1-39 (39)
64 TIGR00570 cdk7 CDK-activating 98.5 5.4E-07 1.2E-11 84.3 8.8 61 36-97 3-72 (309)
65 KOG3678 SARM protein (with ste 98.4 1E-05 2.2E-10 78.6 16.7 247 161-424 173-452 (832)
66 PHA02926 zinc finger-like prot 98.4 1.6E-07 3.4E-12 82.4 4.0 51 33-83 167-230 (242)
67 KOG2660 Locus-specific chromos 98.4 1.4E-07 2.9E-12 87.6 3.2 68 31-100 10-82 (331)
68 PF14634 zf-RING_5: zinc-RING 98.4 2.2E-07 4.8E-12 61.7 3.3 41 38-80 1-44 (44)
69 PF01602 Adaptin_N: Adaptin N 98.4 4E-05 8.7E-10 79.8 21.8 254 125-422 113-367 (526)
70 PF01602 Adaptin_N: Adaptin N 98.4 9.4E-05 2E-09 77.1 24.5 280 88-424 53-333 (526)
71 KOG1789 Endocytosis protein RM 98.4 7.6E-05 1.6E-09 78.9 22.5 252 140-406 1739-2142(2235)
72 KOG2164 Predicted E3 ubiquitin 98.4 1.6E-07 3.5E-12 92.0 2.3 54 36-89 186-242 (513)
73 KOG1293 Proteins containing ar 98.4 1.9E-05 4.2E-10 79.8 16.7 214 158-378 315-534 (678)
74 KOG0946 ER-Golgi vesicle-tethe 98.3 1.6E-05 3.5E-10 81.7 16.2 220 169-405 23-265 (970)
75 KOG4646 Uncharacterized conser 98.3 4.1E-06 8.9E-11 68.1 9.3 132 216-359 15-148 (173)
76 KOG0311 Predicted E3 ubiquitin 98.3 1.2E-07 2.6E-12 88.4 0.6 71 30-101 37-109 (381)
77 COG5574 PEX10 RING-finger-cont 98.3 5.9E-07 1.3E-11 80.8 3.6 51 34-85 213-264 (271)
78 PF00514 Arm: Armadillo/beta-c 98.3 1.1E-06 2.4E-11 57.4 3.8 40 206-245 1-40 (41)
79 KOG0978 E3 ubiquitin ligase in 98.3 3.7E-07 8E-12 93.9 2.2 56 33-89 640-695 (698)
80 KOG2759 Vacuolar H+-ATPase V1 98.2 0.00042 9.1E-09 67.0 22.3 227 188-423 170-437 (442)
81 PF00514 Arm: Armadillo/beta-c 98.2 1.5E-06 3.3E-11 56.7 3.7 40 296-335 2-41 (41)
82 KOG1293 Proteins containing ar 98.2 9.5E-05 2.1E-09 75.0 17.4 254 139-406 390-655 (678)
83 KOG2973 Uncharacterized conser 98.2 0.00044 9.4E-09 64.3 20.1 273 124-424 5-315 (353)
84 KOG2734 Uncharacterized conser 98.2 0.0028 6.1E-08 61.7 26.2 245 143-404 101-371 (536)
85 KOG2879 Predicted E3 ubiquitin 98.1 2.8E-06 6.2E-11 76.7 4.2 60 24-83 227-287 (298)
86 KOG3678 SARM protein (with ste 98.1 4.2E-05 9.2E-10 74.4 12.3 211 211-434 174-400 (832)
87 PF05536 Neurochondrin: Neuroc 98.1 0.00013 2.9E-09 75.5 16.7 155 217-378 5-169 (543)
88 TIGR02270 conserved hypothetic 98.1 0.00088 1.9E-08 66.9 21.8 222 123-425 55-297 (410)
89 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00029 6.3E-09 69.4 18.2 247 148-419 5-264 (371)
90 PF12678 zf-rbx1: RING-H2 zinc 98.1 4.1E-06 9E-11 62.1 3.8 40 38-79 21-73 (73)
91 PTZ00429 beta-adaptin; Provisi 98.0 0.0011 2.5E-08 70.8 22.2 247 122-417 32-278 (746)
92 PF05536 Neurochondrin: Neuroc 98.0 0.00071 1.5E-08 70.2 20.1 241 170-425 7-262 (543)
93 KOG4159 Predicted E3 ubiquitin 98.0 5.2E-06 1.1E-10 81.2 3.8 72 29-102 77-153 (398)
94 KOG2171 Karyopherin (importin) 97.9 0.00067 1.4E-08 73.1 18.4 182 217-413 348-535 (1075)
95 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0016 3.5E-08 63.1 18.7 231 138-378 169-439 (442)
96 KOG1517 Guanine nucleotide bin 97.8 0.00075 1.6E-08 71.8 17.0 184 142-336 486-672 (1387)
97 PTZ00429 beta-adaptin; Provisi 97.8 0.0096 2.1E-07 63.8 25.8 255 125-423 71-325 (746)
98 PF10165 Ric8: Guanine nucleot 97.8 0.0036 7.8E-08 63.6 21.5 268 146-424 1-337 (446)
99 COG5152 Uncharacterized conser 97.8 7.7E-06 1.7E-10 70.0 1.6 45 37-83 197-241 (259)
100 KOG2973 Uncharacterized conser 97.8 0.00049 1.1E-08 64.0 13.3 188 219-422 5-202 (353)
101 KOG4628 Predicted E3 ubiquitin 97.8 5.6E-06 1.2E-10 78.8 0.4 47 37-84 230-279 (348)
102 PF12348 CLASP_N: CLASP N term 97.8 0.00041 8.8E-09 63.9 12.8 189 227-427 17-209 (228)
103 TIGR02270 conserved hypothetic 97.8 0.0058 1.3E-07 61.1 21.7 197 169-424 55-267 (410)
104 KOG4642 Chaperone-dependent E3 97.8 2.5E-05 5.5E-10 69.9 4.1 77 28-105 203-279 (284)
105 KOG1002 Nucleotide excision re 97.7 1.4E-05 3E-10 78.3 2.3 77 10-86 510-589 (791)
106 KOG0297 TNF receptor-associate 97.7 2.2E-05 4.7E-10 77.9 3.7 69 33-103 18-88 (391)
107 PF12861 zf-Apc11: Anaphase-pr 97.7 3.6E-05 7.9E-10 57.6 3.8 46 38-83 34-82 (85)
108 KOG1813 Predicted E3 ubiquitin 97.7 2.1E-05 4.5E-10 72.0 2.3 45 37-83 242-286 (313)
109 KOG2734 Uncharacterized conser 97.7 0.0073 1.6E-07 58.9 19.3 243 124-378 127-401 (536)
110 KOG0826 Predicted E3 ubiquitin 97.6 4.4E-05 9.5E-10 70.9 3.8 71 11-83 272-346 (357)
111 KOG0824 Predicted E3 ubiquitin 97.6 2.9E-05 6.3E-10 71.3 2.1 47 38-85 9-55 (324)
112 PF12348 CLASP_N: CLASP N term 97.6 0.00055 1.2E-08 63.0 10.3 185 138-341 19-212 (228)
113 KOG4413 26S proteasome regulat 97.6 0.027 5.8E-07 53.2 20.9 226 139-379 95-335 (524)
114 COG1413 FOG: HEAT repeat [Ener 97.6 0.014 3E-07 57.1 20.6 187 123-377 44-242 (335)
115 PF13646 HEAT_2: HEAT repeats; 97.6 0.00034 7.4E-09 53.8 7.3 86 219-331 1-88 (88)
116 smart00185 ARM Armadillo/beta- 97.5 0.00012 2.6E-09 47.4 4.0 39 207-245 2-40 (41)
117 smart00185 ARM Armadillo/beta- 97.5 0.00016 3.4E-09 46.9 4.4 39 297-335 3-41 (41)
118 KOG1242 Protein containing ada 97.5 0.01 2.3E-07 60.3 18.6 228 166-426 211-447 (569)
119 PF14664 RICTOR_N: Rapamycin-i 97.5 0.0069 1.5E-07 59.8 16.9 218 206-438 14-240 (371)
120 KOG1241 Karyopherin (importin) 97.4 0.017 3.6E-07 60.1 19.6 222 188-425 230-478 (859)
121 PF13646 HEAT_2: HEAT repeats; 97.4 0.00028 6.1E-09 54.3 5.2 86 308-419 1-87 (88)
122 COG5369 Uncharacterized conser 97.4 0.0021 4.6E-08 64.0 11.5 187 209-403 423-617 (743)
123 COG5369 Uncharacterized conser 97.3 0.0012 2.7E-08 65.6 9.6 195 142-346 405-605 (743)
124 PF11841 DUF3361: Domain of un 97.3 0.012 2.5E-07 50.3 14.2 122 253-380 6-134 (160)
125 COG1413 FOG: HEAT repeat [Ener 97.3 0.018 4E-07 56.2 17.8 183 168-419 43-237 (335)
126 KOG0802 E3 ubiquitin ligase [P 97.3 8.2E-05 1.8E-09 77.4 1.0 48 34-83 289-341 (543)
127 PF10165 Ric8: Guanine nucleot 97.2 0.07 1.5E-06 54.3 21.6 236 138-377 44-337 (446)
128 KOG0212 Uncharacterized conser 97.2 0.033 7.1E-07 56.1 17.4 280 121-426 123-408 (675)
129 KOG0212 Uncharacterized conser 97.1 0.036 7.8E-07 55.8 17.6 192 168-378 250-445 (675)
130 KOG3039 Uncharacterized conser 97.1 0.0003 6.6E-09 62.6 2.6 53 35-89 220-276 (303)
131 KOG4367 Predicted Zn-finger pr 97.1 0.00031 6.7E-09 67.5 2.5 34 34-67 2-35 (699)
132 KOG1517 Guanine nucleotide bin 97.1 0.048 1E-06 58.7 18.5 226 192-422 487-730 (1387)
133 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00042 9.2E-09 65.4 3.2 49 33-83 284-345 (491)
134 PF09759 Atx10homo_assoc: Spin 97.0 0.003 6.5E-08 49.7 7.1 68 233-304 2-70 (102)
135 COG5540 RING-finger-containing 97.0 0.00045 9.7E-09 63.5 2.8 47 37-84 324-373 (374)
136 PF13513 HEAT_EZ: HEAT-like re 97.0 0.00081 1.8E-08 46.8 3.5 55 275-333 1-55 (55)
137 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0013 2.9E-08 45.7 4.6 55 231-288 1-55 (55)
138 KOG1789 Endocytosis protein RM 97.0 0.0096 2.1E-07 63.7 12.5 140 232-377 1740-1883(2235)
139 COG5096 Vesicle coat complex, 96.9 0.045 9.8E-07 58.0 17.1 102 219-335 94-195 (757)
140 KOG1062 Vesicle coat complex A 96.9 0.3 6.4E-06 51.5 22.5 203 143-360 196-453 (866)
141 KOG2023 Nuclear transport rece 96.9 0.033 7.2E-07 57.2 15.3 268 125-425 127-464 (885)
142 KOG1242 Protein containing ada 96.9 0.092 2E-06 53.6 18.5 198 192-417 271-476 (569)
143 KOG0567 HEAT repeat-containing 96.8 0.12 2.5E-06 47.6 16.4 197 165-423 64-279 (289)
144 KOG0804 Cytoplasmic Zn-finger 96.8 0.00064 1.4E-08 65.9 2.1 44 36-83 175-222 (493)
145 KOG1061 Vesicle coat complex A 96.8 0.037 8.1E-07 57.8 14.8 267 127-432 122-424 (734)
146 KOG1241 Karyopherin (importin) 96.8 0.15 3.3E-06 53.3 19.0 200 168-380 319-533 (859)
147 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.19 4.1E-06 54.2 20.4 249 163-426 112-408 (802)
148 KOG4413 26S proteasome regulat 96.7 0.26 5.7E-06 46.7 18.6 272 138-427 140-443 (524)
149 KOG2259 Uncharacterized conser 96.7 0.026 5.6E-07 57.9 12.6 207 138-374 210-472 (823)
150 COG5240 SEC21 Vesicle coat com 96.7 0.34 7.5E-06 49.2 20.1 60 360-427 499-558 (898)
151 COG5181 HSH155 U2 snRNP splice 96.7 0.072 1.6E-06 54.3 15.4 257 124-423 606-869 (975)
152 PF09759 Atx10homo_assoc: Spin 96.7 0.0062 1.3E-07 48.0 6.4 65 192-256 3-69 (102)
153 KOG1645 RING-finger-containing 96.6 0.00099 2.2E-08 63.8 2.1 60 37-96 5-69 (463)
154 COG5231 VMA13 Vacuolar H+-ATPa 96.6 0.18 3.8E-06 47.7 16.4 226 189-423 163-427 (432)
155 KOG0213 Splicing factor 3b, su 96.6 0.12 2.5E-06 54.0 16.5 251 134-424 807-1065(1172)
156 KOG1059 Vesicle coat complex A 96.6 0.82 1.8E-05 47.8 22.3 186 125-343 184-372 (877)
157 KOG1059 Vesicle coat complex A 96.6 0.63 1.4E-05 48.6 21.4 251 125-424 147-402 (877)
158 KOG2042 Ubiquitin fusion degra 96.4 0.0042 9.1E-08 66.6 5.3 75 29-105 863-938 (943)
159 KOG4172 Predicted E3 ubiquitin 96.4 0.0012 2.6E-08 44.3 0.7 46 37-83 8-54 (62)
160 PF11841 DUF3361: Domain of un 96.4 0.063 1.4E-06 45.8 11.2 119 298-422 3-129 (160)
161 KOG3036 Protein involved in ce 96.4 0.22 4.9E-06 45.3 15.1 148 142-293 95-250 (293)
162 KOG1734 Predicted RING-contain 96.3 0.0012 2.6E-08 59.7 0.6 51 34-85 222-283 (328)
163 KOG2259 Uncharacterized conser 96.3 0.045 9.6E-07 56.2 11.5 185 218-422 235-473 (823)
164 KOG1039 Predicted E3 ubiquitin 96.3 0.0025 5.3E-08 61.4 2.6 50 34-83 159-221 (344)
165 KOG1062 Vesicle coat complex A 96.3 0.7 1.5E-05 48.8 20.1 251 127-417 108-407 (866)
166 smart00744 RINGv The RING-vari 96.3 0.007 1.5E-07 40.9 4.0 42 38-79 1-49 (49)
167 PF04641 Rtf2: Rtf2 RING-finge 96.3 0.0032 7E-08 59.1 3.1 52 33-87 110-165 (260)
168 COG5194 APC11 Component of SCF 96.1 0.0064 1.4E-07 44.4 3.3 44 38-83 33-81 (88)
169 KOG1248 Uncharacterized conser 96.1 0.63 1.4E-05 51.2 19.4 221 188-424 667-898 (1176)
170 PF04078 Rcd1: Cell differenti 96.0 0.34 7.3E-06 44.8 14.8 188 229-425 7-219 (262)
171 KOG4151 Myosin assembly protei 96.0 0.31 6.7E-06 51.4 16.0 223 158-401 494-719 (748)
172 KOG2023 Nuclear transport rece 96.0 0.094 2E-06 54.0 11.9 156 216-378 127-286 (885)
173 PF12717 Cnd1: non-SMC mitotic 95.9 0.36 7.8E-06 42.5 14.4 93 230-336 1-93 (178)
174 KOG1824 TATA-binding protein-i 95.9 0.22 4.8E-06 53.4 14.6 268 126-424 9-286 (1233)
175 KOG2999 Regulator of Rac1, req 95.9 0.43 9.3E-06 48.3 15.9 157 218-380 84-245 (713)
176 PF14570 zf-RING_4: RING/Ubox 95.8 0.0074 1.6E-07 40.1 2.1 43 39-82 1-47 (48)
177 KOG0213 Splicing factor 3b, su 95.7 0.067 1.5E-06 55.7 9.8 149 217-377 799-954 (1172)
178 PF02891 zf-MIZ: MIZ/SP-RING z 95.7 0.012 2.6E-07 40.0 3.0 45 37-81 3-50 (50)
179 KOG2817 Predicted E3 ubiquitin 95.6 0.011 2.3E-07 57.1 3.7 48 32-80 330-382 (394)
180 KOG0289 mRNA splicing factor [ 95.6 0.025 5.5E-07 55.0 6.1 51 37-89 1-52 (506)
181 PF06025 DUF913: Domain of Unk 95.6 2.2 4.8E-05 42.4 20.0 212 145-380 3-235 (379)
182 COG5096 Vesicle coat complex, 95.6 0.8 1.7E-05 48.9 17.3 163 189-377 33-195 (757)
183 PF08569 Mo25: Mo25-like; Int 95.5 0.8 1.7E-05 44.6 16.1 206 212-427 71-286 (335)
184 KOG4151 Myosin assembly protei 95.5 0.56 1.2E-05 49.5 15.6 203 206-423 493-699 (748)
185 KOG3036 Protein involved in ce 95.4 2 4.4E-05 39.3 21.8 210 121-343 25-255 (293)
186 KOG1061 Vesicle coat complex A 95.4 0.49 1.1E-05 49.7 15.0 96 186-293 97-192 (734)
187 KOG3800 Predicted E3 ubiquitin 95.4 0.012 2.5E-07 54.3 3.0 47 38-85 2-53 (300)
188 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.14 3.1E-06 40.1 8.8 68 259-334 26-95 (97)
189 PF11793 FANCL_C: FANCL C-term 95.4 0.0047 1E-07 45.3 0.3 48 36-83 2-66 (70)
190 PF06371 Drf_GBD: Diaphanous G 95.4 0.24 5.1E-06 43.9 11.4 117 122-245 66-186 (187)
191 PF13764 E3_UbLigase_R4: E3 ub 95.4 2.3 5.1E-05 46.1 20.4 249 123-377 118-406 (802)
192 COG5181 HSH155 U2 snRNP splice 95.2 0.12 2.5E-06 52.8 9.5 148 217-377 604-759 (975)
193 PF04078 Rcd1: Cell differenti 95.2 0.47 1E-05 43.9 12.6 154 141-303 65-227 (262)
194 PF05004 IFRD: Interferon-rela 95.2 3.2 7E-05 40.0 19.6 195 219-427 45-260 (309)
195 KOG2979 Protein involved in DN 95.2 0.018 3.8E-07 52.3 3.3 45 37-81 177-222 (262)
196 KOG3113 Uncharacterized conser 95.2 0.022 4.8E-07 51.3 3.8 50 34-87 109-162 (293)
197 KOG0828 Predicted E3 ubiquitin 95.2 0.016 3.4E-07 57.1 3.1 51 33-84 568-635 (636)
198 COG5231 VMA13 Vacuolar H+-ATPa 95.1 1.3 2.8E-05 42.0 15.3 242 124-377 150-428 (432)
199 COG5175 MOT2 Transcriptional r 95.1 0.016 3.4E-07 54.3 2.9 48 37-85 15-66 (480)
200 KOG3039 Uncharacterized conser 95.1 0.014 3.1E-07 52.3 2.4 35 33-67 40-74 (303)
201 PF04063 DUF383: Domain of unk 95.1 0.24 5.3E-06 44.0 10.2 109 315-429 4-137 (192)
202 PF06371 Drf_GBD: Diaphanous G 95.0 0.21 4.5E-06 44.2 9.9 112 260-376 66-186 (187)
203 KOG1077 Vesicle coat complex A 95.0 3.5 7.5E-05 43.3 19.3 240 142-416 164-425 (938)
204 COG5215 KAP95 Karyopherin (imp 95.0 1.3 2.8E-05 45.3 15.8 216 187-422 233-477 (858)
205 KOG1493 Anaphase-promoting com 95.0 0.014 3.1E-07 42.2 1.6 46 38-83 33-81 (84)
206 PF04063 DUF383: Domain of unk 94.9 0.2 4.3E-06 44.6 9.2 123 231-358 9-157 (192)
207 PF08324 PUL: PUL domain; Int 94.9 0.55 1.2E-05 44.3 12.8 185 171-368 66-265 (268)
208 PF08045 CDC14: Cell division 94.9 0.37 8.1E-06 44.7 11.1 100 232-335 106-207 (257)
209 COG5113 UFD2 Ubiquitin fusion 94.8 0.047 1E-06 55.6 5.5 78 27-106 845-923 (929)
210 PF08045 CDC14: Cell division 94.8 0.29 6.3E-06 45.4 10.3 102 189-291 105-208 (257)
211 KOG1060 Vesicle coat complex A 94.8 3.4 7.3E-05 43.9 18.6 176 121-336 282-459 (968)
212 KOG1571 Predicted E3 ubiquitin 94.7 0.021 4.6E-07 54.4 2.5 48 30-82 299-346 (355)
213 KOG0825 PHD Zn-finger protein 94.7 0.007 1.5E-07 62.6 -0.8 47 37-85 124-173 (1134)
214 KOG0827 Predicted E3 ubiquitin 94.6 0.026 5.6E-07 54.0 2.9 48 37-85 5-58 (465)
215 KOG1077 Vesicle coat complex A 94.4 4.7 0.0001 42.3 18.5 216 192-424 166-398 (938)
216 PF11698 V-ATPase_H_C: V-ATPas 94.4 0.13 2.9E-06 41.6 6.2 82 208-291 32-116 (119)
217 PF05004 IFRD: Interferon-rela 94.4 3.9 8.4E-05 39.5 17.4 189 124-334 45-256 (309)
218 PF06025 DUF913: Domain of Unk 94.3 3.3 7.3E-05 41.1 17.1 111 140-255 123-241 (379)
219 KOG1785 Tyrosine kinase negati 94.2 0.024 5.2E-07 54.3 1.8 48 38-85 371-418 (563)
220 PF05290 Baculo_IE-1: Baculovi 94.2 0.052 1.1E-06 44.1 3.4 51 35-85 79-134 (140)
221 KOG1001 Helicase-like transcri 94.1 0.02 4.2E-07 60.7 1.1 47 37-84 455-501 (674)
222 KOG4265 Predicted E3 ubiquitin 94.1 0.031 6.7E-07 53.3 2.3 47 36-84 290-337 (349)
223 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.27 5.9E-06 38.5 7.2 68 348-423 27-96 (97)
224 PF11698 V-ATPase_H_C: V-ATPas 94.0 0.12 2.6E-06 41.9 5.2 71 261-334 44-114 (119)
225 KOG2611 Neurochondrin/leucine- 93.9 5.8 0.00013 39.9 17.2 150 222-377 16-182 (698)
226 PF02985 HEAT: HEAT repeat; I 93.8 0.11 2.4E-06 31.2 3.6 30 261-291 1-30 (31)
227 PF14668 RICTOR_V: Rapamycin-i 93.8 0.33 7.2E-06 35.8 6.7 67 277-348 3-70 (73)
228 PRK14707 hypothetical protein; 93.6 16 0.00034 43.5 22.1 221 120-359 371-594 (2710)
229 COG5219 Uncharacterized conser 93.3 0.043 9.4E-07 58.2 1.9 48 36-83 1469-1523(1525)
230 KOG4692 Predicted E3 ubiquitin 93.3 0.05 1.1E-06 51.4 2.1 48 34-83 420-467 (489)
231 PF11701 UNC45-central: Myosin 93.3 0.5 1.1E-05 40.7 8.2 148 170-332 5-156 (157)
232 KOG1943 Beta-tubulin folding c 93.2 12 0.00027 41.3 19.7 221 122-366 337-600 (1133)
233 KOG0414 Chromosome condensatio 93.2 0.68 1.5E-05 51.0 10.5 143 170-335 921-1064(1251)
234 PF08569 Mo25: Mo25-like; Int 93.2 2.1 4.5E-05 41.7 13.1 186 139-337 89-285 (335)
235 PF14447 Prok-RING_4: Prokaryo 93.1 0.048 1E-06 37.2 1.2 47 36-86 7-53 (55)
236 PF05918 API5: Apoptosis inhib 93.0 1.4 3E-05 45.6 12.1 124 228-374 33-159 (556)
237 KOG4185 Predicted E3 ubiquitin 93.0 0.095 2.1E-06 50.3 3.7 63 37-100 4-77 (296)
238 PF02985 HEAT: HEAT repeat; I 93.0 0.24 5.2E-06 29.7 4.1 27 219-245 2-28 (31)
239 KOG1240 Protein kinase contain 92.9 5 0.00011 44.7 16.4 270 127-426 423-727 (1431)
240 PF11701 UNC45-central: Myosin 92.9 1.5 3.3E-05 37.7 10.6 144 263-419 6-154 (157)
241 PF12717 Cnd1: non-SMC mitotic 92.9 6.1 0.00013 34.7 15.9 92 188-291 1-93 (178)
242 PF12460 MMS19_C: RNAPII trans 92.5 8.8 0.00019 38.7 17.3 111 218-337 272-396 (415)
243 KOG1824 TATA-binding protein-i 92.4 2.8 6.1E-05 45.4 13.5 136 190-335 148-286 (1233)
244 KOG3161 Predicted E3 ubiquitin 92.3 0.082 1.8E-06 53.9 2.2 59 34-97 9-76 (861)
245 COG5627 MMS21 DNA repair prote 92.2 0.14 2.9E-06 45.8 3.2 60 37-96 190-252 (275)
246 KOG2611 Neurochondrin/leucine- 92.0 15 0.00032 37.1 19.0 129 139-272 24-164 (698)
247 COG5215 KAP95 Karyopherin (imp 92.0 17 0.00036 37.6 20.3 156 167-336 320-480 (858)
248 KOG2930 SCF ubiquitin ligase, 92.0 0.12 2.7E-06 39.8 2.3 27 53-81 80-106 (114)
249 KOG4362 Transcriptional regula 91.8 0.067 1.5E-06 55.7 1.0 66 34-99 19-85 (684)
250 KOG1941 Acetylcholine receptor 91.7 0.085 1.8E-06 50.6 1.4 45 36-80 365-413 (518)
251 KOG1078 Vesicle coat complex C 91.5 11 0.00025 40.1 16.5 265 126-425 245-533 (865)
252 PF08746 zf-RING-like: RING-li 91.5 0.15 3.3E-06 33.3 2.1 40 39-78 1-43 (43)
253 PRK14707 hypothetical protein; 91.5 35 0.00075 40.9 21.3 268 122-416 163-437 (2710)
254 KOG2999 Regulator of Rac1, req 91.4 2.8 6E-05 42.7 11.6 148 264-422 87-240 (713)
255 PF14668 RICTOR_V: Rapamycin-i 91.1 1 2.2E-05 33.2 6.3 67 234-306 4-70 (73)
256 PF12031 DUF3518: Domain of un 91.0 0.94 2E-05 41.3 7.3 82 190-272 139-228 (257)
257 PF07814 WAPL: Wings apart-lik 91.0 11 0.00025 37.1 15.8 240 122-381 21-303 (361)
258 PF08167 RIX1: rRNA processing 90.7 3.5 7.6E-05 35.8 10.6 115 217-335 25-143 (165)
259 PF12460 MMS19_C: RNAPII trans 90.7 9.3 0.0002 38.6 15.2 186 218-424 190-394 (415)
260 KOG4535 HEAT and armadillo rep 90.6 0.34 7.3E-06 48.3 4.4 188 188-378 404-604 (728)
261 KOG1058 Vesicle coat complex C 90.6 25 0.00053 37.6 17.7 232 142-423 222-462 (948)
262 COG5240 SEC21 Vesicle coat com 90.5 24 0.00052 36.5 19.0 143 126-292 264-406 (898)
263 COG5109 Uncharacterized conser 90.4 0.2 4.3E-06 46.8 2.5 47 32-79 332-383 (396)
264 KOG1248 Uncharacterized conser 90.2 15 0.00032 41.1 16.6 220 139-377 667-898 (1176)
265 PF05918 API5: Apoptosis inhib 90.2 1.9 4.1E-05 44.7 9.6 120 189-331 36-158 (556)
266 PF12719 Cnd3: Nuclear condens 90.2 17 0.00036 34.9 15.8 172 217-406 26-209 (298)
267 KOG2114 Vacuolar assembly/sort 90.1 0.18 3.8E-06 53.4 2.2 39 37-80 841-880 (933)
268 PF12031 DUF3518: Domain of un 89.7 1.2 2.6E-05 40.6 6.8 123 231-360 80-228 (257)
269 KOG0414 Chromosome condensatio 89.6 5.5 0.00012 44.3 12.7 160 218-406 920-1083(1251)
270 KOG0298 DEAD box-containing he 89.5 0.081 1.8E-06 58.3 -0.8 55 26-82 1143-1198(1394)
271 PF12719 Cnd3: Nuclear condens 89.5 16 0.00034 35.1 15.0 161 136-318 37-209 (298)
272 KOG2062 26S proteasome regulat 89.4 17 0.00036 38.7 15.4 109 305-434 553-663 (929)
273 KOG1240 Protein kinase contain 89.2 6.3 0.00014 44.0 12.8 144 222-378 583-726 (1431)
274 COG5209 RCD1 Uncharacterized p 88.8 1.3 2.8E-05 39.9 6.3 97 323-424 117-218 (315)
275 COG5220 TFB3 Cdk activating ki 88.7 0.18 3.8E-06 45.2 0.9 48 35-83 9-64 (314)
276 KOG4535 HEAT and armadillo rep 88.3 0.26 5.6E-06 49.1 1.7 183 235-424 409-603 (728)
277 KOG1814 Predicted E3 ubiquitin 88.1 0.68 1.5E-05 45.1 4.4 46 34-79 182-236 (445)
278 KOG1058 Vesicle coat complex C 87.9 42 0.00091 36.0 17.8 173 217-424 243-422 (948)
279 KOG2274 Predicted importin 9 [ 87.4 44 0.00095 36.5 17.3 156 168-337 530-691 (1005)
280 KOG2274 Predicted importin 9 [ 87.2 19 0.00041 39.1 14.5 183 228-426 461-648 (1005)
281 COG5236 Uncharacterized conser 87.1 0.97 2.1E-05 42.9 4.7 75 35-109 60-135 (493)
282 PF05605 zf-Di19: Drought indu 86.9 0.34 7.5E-06 33.4 1.3 39 35-80 1-39 (54)
283 KOG0301 Phospholipase A2-activ 86.9 41 0.00089 35.5 16.3 159 189-359 558-727 (745)
284 KOG3665 ZYG-1-like serine/thre 86.7 3.5 7.6E-05 44.4 9.3 172 149-330 494-692 (699)
285 PF10367 Vps39_2: Vacuolar sor 86.5 0.23 5E-06 39.6 0.2 36 29-64 71-108 (109)
286 KOG1060 Vesicle coat complex A 86.4 52 0.0011 35.5 19.2 206 171-425 38-244 (968)
287 KOG1991 Nuclear transport rece 86.4 36 0.00078 37.5 16.2 145 168-319 410-560 (1010)
288 KOG1967 DNA repair/transcripti 86.0 14 0.0003 40.3 12.8 209 189-419 788-1019(1030)
289 KOG1967 DNA repair/transcripti 85.9 7.4 0.00016 42.2 10.8 149 216-371 866-1018(1030)
290 KOG1943 Beta-tubulin folding c 85.8 8.6 0.00019 42.4 11.4 195 217-425 341-574 (1133)
291 KOG2025 Chromosome condensatio 85.8 37 0.00081 36.1 15.4 96 188-293 98-193 (892)
292 KOG2956 CLIP-associating prote 85.5 43 0.00094 33.8 17.5 186 219-425 285-479 (516)
293 KOG4275 Predicted E3 ubiquitin 85.4 0.19 4.2E-06 46.4 -0.8 41 36-82 300-341 (350)
294 KOG1991 Nuclear transport rece 85.3 40 0.00086 37.2 15.9 115 216-338 409-535 (1010)
295 cd03569 VHS_Hrs_Vps27p VHS dom 85.1 7 0.00015 33.0 8.6 78 349-429 42-119 (142)
296 PF01347 Vitellogenin_N: Lipop 85.0 50 0.0011 35.1 17.2 157 219-413 433-611 (618)
297 KOG4739 Uncharacterized protei 84.2 0.51 1.1E-05 42.8 1.4 50 37-90 4-55 (233)
298 KOG1820 Microtubule-associated 84.0 23 0.00049 38.8 13.7 177 138-335 265-443 (815)
299 PF08324 PUL: PUL domain; Int 83.9 11 0.00024 35.4 10.4 167 140-315 77-253 (268)
300 PF14569 zf-UDP: Zinc-binding 83.9 1.4 3E-05 32.4 3.2 46 37-83 10-62 (80)
301 cd03568 VHS_STAM VHS domain fa 83.9 8.3 0.00018 32.6 8.5 78 349-429 38-115 (144)
302 PHA03096 p28-like protein; Pro 83.8 0.74 1.6E-05 43.5 2.3 43 37-79 179-230 (284)
303 KOG2933 Uncharacterized conser 83.7 15 0.00033 34.9 10.7 134 219-370 90-227 (334)
304 KOG3002 Zn finger protein [Gen 83.7 1 2.2E-05 42.9 3.2 65 32-104 44-109 (299)
305 KOG1788 Uncharacterized conser 83.7 25 0.00054 39.1 13.4 257 147-426 663-984 (2799)
306 KOG1812 Predicted E3 ubiquitin 83.6 1.2 2.5E-05 44.4 3.7 68 36-104 146-226 (384)
307 KOG0301 Phospholipase A2-activ 83.5 36 0.00077 35.9 14.1 173 140-329 558-740 (745)
308 KOG1940 Zn-finger protein [Gen 82.7 0.85 1.8E-05 42.7 2.2 42 37-80 159-204 (276)
309 COG5098 Chromosome condensatio 82.2 21 0.00045 37.8 11.9 112 308-426 301-418 (1128)
310 PF14446 Prok-RING_1: Prokaryo 82.1 1.1 2.4E-05 30.7 2.0 29 37-65 6-38 (54)
311 PHA02825 LAP/PHD finger-like p 82.0 1.9 4.2E-05 36.5 3.8 47 36-83 8-59 (162)
312 PHA02862 5L protein; Provision 81.6 1.5 3.1E-05 36.5 2.9 46 38-84 4-54 (156)
313 smart00288 VHS Domain present 81.5 12 0.00025 31.2 8.5 76 350-428 39-115 (133)
314 COG5209 RCD1 Uncharacterized p 81.5 42 0.00091 30.5 15.2 194 143-343 62-276 (315)
315 KOG2062 26S proteasome regulat 80.9 21 0.00046 38.0 11.5 99 259-376 553-652 (929)
316 PF00790 VHS: VHS domain; Int 80.9 10 0.00022 31.8 8.0 75 350-427 44-121 (140)
317 PF10363 DUF2435: Protein of u 80.8 7.2 0.00016 30.2 6.4 67 263-335 6-72 (92)
318 KOG0211 Protein phosphatase 2A 80.8 65 0.0014 35.1 15.6 250 142-424 371-625 (759)
319 KOG4718 Non-SMC (structural ma 80.5 0.92 2E-05 40.1 1.5 43 37-81 182-225 (235)
320 KOG1788 Uncharacterized conser 80.5 73 0.0016 35.7 15.4 234 121-378 719-983 (2799)
321 COG3813 Uncharacterized protei 80.4 1.9 4.1E-05 31.0 2.7 36 54-93 27-62 (84)
322 KOG2956 CLIP-associating prote 80.3 70 0.0015 32.4 16.3 187 122-335 286-477 (516)
323 cd03561 VHS VHS domain family; 80.0 13 0.00028 30.9 8.3 78 349-429 38-117 (133)
324 PF14353 CpXC: CpXC protein 79.8 1.2 2.6E-05 36.8 2.0 45 37-83 2-49 (128)
325 PF12906 RINGv: RING-variant d 79.4 1.1 2.4E-05 29.8 1.3 40 39-78 1-47 (47)
326 PF11707 Npa1: Ribosome 60S bi 78.7 67 0.0015 31.2 14.1 159 219-380 58-240 (330)
327 KOG0567 HEAT repeat-containing 78.5 8.9 0.00019 35.6 7.2 91 218-334 188-279 (289)
328 COG5218 YCG1 Chromosome conden 78.3 92 0.002 32.6 14.8 114 306-432 91-204 (885)
329 COG5537 IRR1 Cohesin [Cell div 78.1 56 0.0012 34.1 13.3 189 227-435 285-479 (740)
330 PF13251 DUF4042: Domain of un 78.1 30 0.00065 30.5 10.3 111 220-336 43-175 (182)
331 KOG1820 Microtubule-associated 77.0 79 0.0017 34.8 14.9 175 227-420 263-439 (815)
332 KOG3579 Predicted E3 ubiquitin 76.7 3.4 7.4E-05 38.2 4.0 44 34-77 266-316 (352)
333 PLN02436 cellulose synthase A 76.7 2.6 5.6E-05 46.6 3.8 46 37-83 37-89 (1094)
334 KOG2025 Chromosome condensatio 76.7 7.9 0.00017 40.8 7.0 114 306-432 85-198 (892)
335 PF11864 DUF3384: Domain of un 76.3 97 0.0021 31.8 20.8 105 307-422 214-329 (464)
336 KOG2137 Protein kinase [Signal 74.7 19 0.00041 38.1 9.3 134 216-361 388-521 (700)
337 COG5116 RPN2 26S proteasome re 74.7 7.7 0.00017 39.9 6.2 66 305-379 550-617 (926)
338 PF01347 Vitellogenin_N: Lipop 74.7 13 0.00028 39.7 8.5 161 215-406 393-570 (618)
339 KOG4653 Uncharacterized conser 74.5 39 0.00085 36.7 11.5 145 269-423 736-917 (982)
340 cd03567 VHS_GGA VHS domain fam 74.4 25 0.00055 29.5 8.4 76 349-427 39-119 (139)
341 cd03572 ENTH_epsin_related ENT 74.3 43 0.00093 27.4 9.4 71 350-423 40-118 (122)
342 PF11865 DUF3385: Domain of un 74.0 44 0.00095 28.7 10.1 146 169-334 11-156 (160)
343 KOG4653 Uncharacterized conser 73.7 51 0.0011 35.9 12.1 179 124-335 729-918 (982)
344 PF14500 MMS19_N: Dos2-interac 73.5 81 0.0018 29.6 19.8 209 138-378 11-238 (262)
345 PF07191 zinc-ribbons_6: zinc- 73.5 0.13 2.8E-06 37.2 -4.7 41 36-83 1-41 (70)
346 KOG1020 Sister chromatid cohes 73.2 77 0.0017 36.8 13.8 131 234-381 794-925 (1692)
347 PLN02189 cellulose synthase 73.0 2.3 4.9E-05 46.9 2.2 46 37-83 35-87 (1040)
348 smart00638 LPD_N Lipoprotein N 72.5 46 0.00099 35.1 12.0 142 214-378 354-510 (574)
349 KOG2032 Uncharacterized conser 72.1 42 0.00091 34.1 10.5 155 259-423 253-415 (533)
350 KOG3665 ZYG-1-like serine/thre 72.1 36 0.00077 36.9 11.0 172 240-421 494-694 (699)
351 cd03568 VHS_STAM VHS domain fa 71.9 14 0.0003 31.2 6.4 73 260-335 37-110 (144)
352 PF11707 Npa1: Ribosome 60S bi 71.7 1E+02 0.0022 30.0 15.9 167 262-433 58-246 (330)
353 KOG0314 Predicted E3 ubiquitin 71.5 2.1 4.5E-05 42.9 1.4 68 32-101 215-285 (448)
354 PLN02638 cellulose synthase A 71.0 2.7 5.9E-05 46.5 2.3 46 37-83 18-70 (1079)
355 KOG2932 E3 ubiquitin ligase in 70.7 2 4.3E-05 40.3 1.0 43 37-83 91-134 (389)
356 PLN02195 cellulose synthase A 70.6 3.2 6.9E-05 45.5 2.7 45 38-83 8-59 (977)
357 PLN02400 cellulose synthase 70.1 3.5 7.5E-05 45.8 2.9 46 37-83 37-89 (1085)
358 PF14726 RTTN_N: Rotatin, an a 69.9 48 0.001 26.0 8.4 70 257-331 27-96 (98)
359 KOG3268 Predicted E3 ubiquitin 69.6 3.3 7.2E-05 35.5 2.1 31 53-83 189-228 (234)
360 KOG0915 Uncharacterized conser 68.9 1.7E+02 0.0037 34.3 15.2 224 188-423 1011-1264(1702)
361 PF10235 Cript: Microtubule-as 68.8 3.4 7.4E-05 31.6 1.8 38 36-84 44-81 (90)
362 cd03569 VHS_Hrs_Vps27p VHS dom 68.4 34 0.00073 28.8 8.0 74 217-291 41-115 (142)
363 PF10083 DUF2321: Uncharacteri 68.0 9.2 0.0002 32.3 4.3 93 54-161 26-121 (158)
364 COG5116 RPN2 26S proteasome re 67.9 35 0.00076 35.4 9.0 98 259-376 550-649 (926)
365 KOG3899 Uncharacterized conser 67.9 3.4 7.3E-05 38.4 1.9 33 54-86 325-368 (381)
366 PF10272 Tmpp129: Putative tra 67.9 3.9 8.4E-05 40.0 2.4 31 57-87 314-355 (358)
367 PF08389 Xpo1: Exportin 1-like 67.5 54 0.0012 27.0 9.3 64 260-330 82-148 (148)
368 KOG1815 Predicted E3 ubiquitin 67.4 5.7 0.00012 40.5 3.7 50 34-83 68-126 (444)
369 KOG3970 Predicted E3 ubiquitin 67.2 13 0.00029 33.3 5.3 46 38-83 52-105 (299)
370 PF11791 Aconitase_B_N: Aconit 67.1 13 0.00028 31.5 5.0 27 219-245 96-122 (154)
371 KOG0883 Cyclophilin type, U bo 66.9 3.6 7.7E-05 39.9 1.9 32 37-68 41-72 (518)
372 PF11865 DUF3385: Domain of un 66.8 48 0.001 28.5 8.8 143 218-375 11-155 (160)
373 PLN02915 cellulose synthase A 66.0 6.1 0.00013 43.8 3.6 46 37-83 16-68 (1044)
374 PF08167 RIX1: rRNA processing 65.9 25 0.00055 30.4 7.0 113 260-380 25-146 (165)
375 PF13251 DUF4042: Domain of un 65.6 96 0.0021 27.3 11.1 141 142-293 2-177 (182)
376 KOG2032 Uncharacterized conser 65.0 1.7E+02 0.0037 30.0 18.6 165 166-343 252-423 (533)
377 KOG1243 Protein kinase [Genera 64.6 1.4E+02 0.003 31.9 12.8 242 139-417 267-508 (690)
378 cd03561 VHS VHS domain family; 64.4 48 0.001 27.4 8.1 75 217-292 37-114 (133)
379 PF10363 DUF2435: Protein of u 64.1 32 0.00069 26.6 6.4 71 219-293 5-75 (92)
380 PF10497 zf-4CXXC_R1: Zinc-fin 64.0 6.7 0.00015 31.2 2.7 44 37-80 8-69 (105)
381 cd03567 VHS_GGA VHS domain fam 63.5 27 0.00059 29.3 6.4 72 260-334 38-115 (139)
382 PF12530 DUF3730: Protein of u 62.6 1.3E+02 0.0027 27.7 18.3 128 188-335 14-151 (234)
383 KOG1020 Sister chromatid cohes 62.6 1.4E+02 0.003 34.9 13.1 140 168-333 816-958 (1692)
384 KOG1992 Nuclear export recepto 62.6 1.1E+02 0.0023 33.5 11.6 180 169-359 499-706 (960)
385 KOG1243 Protein kinase [Genera 62.2 53 0.0011 34.9 9.4 183 165-372 327-510 (690)
386 PF14726 RTTN_N: Rotatin, an a 62.1 43 0.00094 26.2 6.8 68 215-285 28-95 (98)
387 PF12726 SEN1_N: SEN1 N termin 61.8 1.5E+02 0.0032 32.5 13.4 120 265-392 446-566 (727)
388 PF04388 Hamartin: Hamartin pr 61.2 1.3E+02 0.0029 32.4 12.6 133 169-334 5-139 (668)
389 KOG1832 HIV-1 Vpr-binding prot 60.9 36 0.00078 37.2 7.9 167 161-343 594-781 (1516)
390 PF10571 UPF0547: Uncharacteri 60.6 4.3 9.3E-05 23.3 0.8 9 38-46 2-10 (26)
391 KOG0915 Uncharacterized conser 60.6 1.7E+02 0.0036 34.4 13.3 179 231-426 971-1162(1702)
392 cd00350 rubredoxin_like Rubred 60.4 6.7 0.00014 23.8 1.6 11 71-81 16-26 (33)
393 smart00288 VHS Domain present 59.9 60 0.0013 26.9 7.9 74 217-291 37-112 (133)
394 KOG2933 Uncharacterized conser 59.8 64 0.0014 30.9 8.6 131 265-417 93-227 (334)
395 PF06906 DUF1272: Protein of u 59.6 11 0.00024 25.9 2.7 27 55-85 28-54 (57)
396 PF06685 DUF1186: Protein of u 59.2 1.5E+02 0.0033 27.5 15.1 116 169-304 32-153 (249)
397 PF04821 TIMELESS: Timeless pr 57.7 1.7E+02 0.0036 27.5 13.1 81 161-247 33-150 (266)
398 PF14225 MOR2-PAG1_C: Cell mor 57.4 1.7E+02 0.0037 27.5 15.7 165 217-406 60-240 (262)
399 COG5218 YCG1 Chromosome conden 57.3 1.1E+02 0.0025 31.9 10.5 119 243-377 77-196 (885)
400 KOG4464 Signaling protein RIC- 56.5 1.4E+02 0.0031 29.8 10.6 156 220-380 48-234 (532)
401 KOG4445 Uncharacterized conser 56.2 4.7 0.0001 37.7 0.7 47 37-83 116-186 (368)
402 PRK04023 DNA polymerase II lar 55.4 10 0.00022 41.7 3.1 46 36-85 626-676 (1121)
403 cd00730 rubredoxin Rubredoxin; 55.2 6.2 0.00013 26.7 0.9 17 28-44 26-42 (50)
404 COG5098 Chromosome condensatio 55.0 73 0.0016 34.0 8.8 108 219-335 301-415 (1128)
405 PRK14890 putative Zn-ribbon RN 54.7 8.2 0.00018 26.9 1.5 32 36-80 25-56 (59)
406 smart00638 LPD_N Lipoprotein N 53.9 1.8E+02 0.004 30.6 12.3 61 217-286 477-541 (574)
407 KOG4464 Signaling protein RIC- 52.9 2.3E+02 0.005 28.4 11.4 88 139-228 110-198 (532)
408 PF08216 CTNNBL: Catenin-beta- 52.7 19 0.00042 28.6 3.5 43 277-323 62-104 (108)
409 PF00790 VHS: VHS domain; Int 52.6 79 0.0017 26.4 7.5 74 217-291 42-119 (140)
410 cd00197 VHS_ENTH_ANTH VHS, ENT 52.3 83 0.0018 25.1 7.4 70 350-422 39-113 (115)
411 KOG1566 Conserved protein Mo25 51.7 2.3E+02 0.005 27.3 17.6 227 162-405 73-311 (342)
412 PF00301 Rubredoxin: Rubredoxi 51.5 6.8 0.00015 26.1 0.7 17 28-44 26-42 (47)
413 PF12530 DUF3730: Protein of u 50.5 2E+02 0.0044 26.3 16.1 118 189-319 98-216 (234)
414 KOG0825 PHD Zn-finger protein 50.1 22 0.00048 38.0 4.3 49 34-82 94-153 (1134)
415 KOG1100 Predicted E3 ubiquitin 50.0 7.6 0.00017 35.0 1.0 39 39-83 161-200 (207)
416 PF01365 RYDR_ITPR: RIH domain 49.3 37 0.00081 30.4 5.4 118 210-337 36-171 (207)
417 PF06844 DUF1244: Protein of u 49.2 11 0.00023 26.9 1.4 12 57-68 11-22 (68)
418 KOG2676 Uncharacterized conser 49.1 1.5E+02 0.0032 29.1 9.3 65 236-304 375-440 (478)
419 PF04216 FdhE: Protein involve 48.8 2.1 4.5E-05 40.9 -3.0 44 37-82 173-221 (290)
420 cd03565 VHS_Tom1 VHS domain fa 48.8 1.4E+02 0.0031 25.0 8.4 78 350-430 40-121 (141)
421 PF05883 Baculo_RING: Baculovi 48.1 13 0.00028 30.8 1.9 41 36-78 26-75 (134)
422 smart00531 TFIIE Transcription 48.1 9.9 0.00021 32.2 1.3 15 71-85 122-136 (147)
423 PF08506 Cse1: Cse1; InterPro 47.4 1.6E+02 0.0036 29.1 9.9 134 141-285 226-370 (370)
424 KOG4231 Intracellular membrane 47.1 16 0.00034 37.2 2.6 61 317-377 339-399 (763)
425 PF07814 WAPL: Wings apart-lik 46.7 1.1E+02 0.0023 30.3 8.5 92 262-358 23-116 (361)
426 PF11864 DUF3384: Domain of un 46.7 3.4E+02 0.0074 27.8 17.2 112 141-270 5-117 (464)
427 PF10521 DUF2454: Protein of u 46.7 1.1E+02 0.0025 28.9 8.5 73 217-290 119-203 (282)
428 KOG1812 Predicted E3 ubiquitin 46.1 9.5 0.00021 38.0 1.1 43 34-78 304-351 (384)
429 PF07975 C1_4: TFIIH C1-like d 45.8 17 0.00036 24.7 1.8 25 53-79 26-50 (51)
430 PF04388 Hamartin: Hamartin pr 45.6 2.3E+02 0.005 30.6 11.4 137 123-291 5-141 (668)
431 PF11791 Aconitase_B_N: Aconit 44.4 64 0.0014 27.4 5.5 28 308-335 96-123 (154)
432 PF04869 Uso1_p115_head: Uso1 43.3 3.1E+02 0.0068 26.4 12.6 142 189-333 52-229 (312)
433 COG5656 SXM1 Importin, protein 43.2 4.6E+02 0.01 28.6 12.5 122 167-293 407-531 (970)
434 cd08050 TAF6 TATA Binding Prot 43.1 2.9E+02 0.0062 27.1 10.8 134 126-272 178-321 (343)
435 PRK06266 transcription initiat 43.0 25 0.00055 30.9 3.1 34 70-103 134-168 (178)
436 KOG2137 Protein kinase [Signal 42.9 1.8E+02 0.0039 31.2 9.6 135 188-335 402-539 (700)
437 PF10521 DUF2454: Protein of u 42.5 2E+02 0.0044 27.2 9.5 71 259-335 118-203 (282)
438 KOG3476 Microtubule-associated 42.5 4.1 9E-05 30.4 -1.5 36 37-83 55-90 (100)
439 TIGR01562 FdhE formate dehydro 42.4 5.8 0.00013 38.0 -1.0 44 36-81 184-233 (305)
440 PF04499 SAPS: SIT4 phosphatas 41.9 2E+02 0.0043 29.6 9.8 81 210-291 55-149 (475)
441 PF04641 Rtf2: Rtf2 RING-finge 41.9 21 0.00045 33.5 2.6 40 31-70 29-69 (260)
442 PRK00420 hypothetical protein; 41.6 14 0.0003 29.7 1.2 14 70-83 38-51 (112)
443 PF06012 DUF908: Domain of Unk 41.3 1.3E+02 0.0028 29.3 8.1 76 191-267 238-323 (329)
444 COG2888 Predicted Zn-ribbon RN 41.3 18 0.0004 25.2 1.5 11 71-81 49-59 (61)
445 KOG0211 Protein phosphatase 2A 41.2 5.2E+02 0.011 28.4 17.1 209 187-424 449-664 (759)
446 PF00096 zf-C2H2: Zinc finger, 40.6 8.7 0.00019 20.7 -0.1 13 37-49 1-13 (23)
447 KOG4231 Intracellular membrane 40.5 16 0.00036 37.0 1.7 67 265-335 332-399 (763)
448 KOG2034 Vacuolar sorting prote 40.3 17 0.00037 39.4 1.9 37 31-67 812-850 (911)
449 PF01365 RYDR_ITPR: RIH domain 40.3 72 0.0016 28.6 5.8 126 159-292 34-171 (207)
450 PF03854 zf-P11: P-11 zinc fin 39.9 18 0.00039 24.0 1.3 43 38-84 4-47 (50)
451 KOG0413 Uncharacterized conser 39.5 1.8E+02 0.0039 32.5 9.0 93 231-337 945-1037(1529)
452 PF15616 TerY-C: TerY-C metal 39.2 12 0.00025 31.0 0.4 39 37-83 78-116 (131)
453 PF13240 zinc_ribbon_2: zinc-r 39.2 3.9 8.3E-05 22.7 -1.7 7 74-80 15-21 (23)
454 PF07800 DUF1644: Protein of u 39.2 14 0.00031 31.3 0.9 20 35-54 1-20 (162)
455 PF12397 U3snoRNP10: U3 small 39.0 2E+02 0.0044 23.0 10.4 69 218-292 7-76 (121)
456 PF14500 MMS19_N: Dos2-interac 38.9 3.3E+02 0.0072 25.5 16.3 190 119-335 35-237 (262)
457 PF14663 RasGEF_N_2: Rapamycin 38.8 65 0.0014 25.9 4.7 37 307-343 9-45 (115)
458 PF06676 DUF1178: Protein of u 38.6 15 0.00033 31.0 1.0 26 53-83 9-43 (148)
459 PF08506 Cse1: Cse1; InterPro 38.6 4.1E+02 0.0088 26.4 14.9 141 260-418 210-369 (370)
460 PF08216 CTNNBL: Catenin-beta- 38.0 30 0.00065 27.6 2.5 42 192-234 63-104 (108)
461 PF14666 RICTOR_M: Rapamycin-i 37.9 3.2E+02 0.007 25.0 11.5 129 274-423 77-224 (226)
462 PF12463 DUF3689: Protein of u 37.8 3.8E+02 0.0082 25.8 10.5 125 210-337 2-175 (303)
463 PF04499 SAPS: SIT4 phosphatas 37.4 2.8E+02 0.0062 28.5 10.1 123 250-379 11-150 (475)
464 PF06012 DUF908: Domain of Unk 37.2 1.6E+02 0.0036 28.5 8.1 77 322-401 238-323 (329)
465 KOG2807 RNA polymerase II tran 37.0 6.9 0.00015 37.1 -1.4 31 53-84 327-357 (378)
466 PF14663 RasGEF_N_2: Rapamycin 36.9 2.2E+02 0.0048 22.8 7.7 40 261-305 9-48 (115)
467 cd03565 VHS_Tom1 VHS domain fa 36.3 1.5E+02 0.0032 24.9 6.7 73 261-335 39-115 (141)
468 COG5656 SXM1 Importin, protein 35.8 2.6E+02 0.0057 30.3 9.5 121 248-377 399-528 (970)
469 PF12231 Rif1_N: Rap1-interact 35.7 4.4E+02 0.0095 26.1 11.0 137 230-377 59-204 (372)
470 KOG0006 E3 ubiquitin-protein l 35.5 27 0.0006 33.0 2.2 14 54-67 342-355 (446)
471 PRK11088 rrmA 23S rRNA methylt 35.4 18 0.0004 34.0 1.2 23 37-59 3-28 (272)
472 KOG2462 C2H2-type Zn-finger pr 35.4 23 0.00049 33.1 1.6 51 34-85 159-228 (279)
473 KOG1949 Uncharacterized conser 35.3 6.2E+02 0.013 27.5 13.5 180 220-422 177-369 (1005)
474 PF09324 DUF1981: Domain of un 35.2 2E+02 0.0043 21.8 7.1 65 259-331 16-84 (86)
475 cd03572 ENTH_epsin_related ENT 34.7 2.6E+02 0.0055 22.9 7.9 74 124-200 36-115 (122)
476 KOG3993 Transcription factor ( 34.7 7.2 0.00016 38.4 -1.7 38 35-83 266-306 (500)
477 KOG2676 Uncharacterized conser 34.6 31 0.00067 33.5 2.5 62 195-256 376-439 (478)
478 PRK14559 putative protein seri 34.2 20 0.00043 38.3 1.3 39 37-85 2-40 (645)
479 KOG2169 Zn-finger transcriptio 34.0 37 0.0008 36.3 3.2 69 33-102 303-375 (636)
480 TIGR00373 conserved hypothetic 32.6 30 0.00065 29.7 1.9 16 71-86 127-142 (158)
481 PF13894 zf-C2H2_4: C2H2-type 32.4 15 0.00033 19.5 0.0 11 38-48 2-12 (24)
482 KOG1078 Vesicle coat complex C 31.6 7.3E+02 0.016 27.2 19.9 76 167-250 240-315 (865)
483 KOG1832 HIV-1 Vpr-binding prot 31.5 1.5E+02 0.0032 32.8 6.9 99 139-256 675-782 (1516)
484 PF12773 DZR: Double zinc ribb 31.3 33 0.00072 22.7 1.6 12 72-83 29-40 (50)
485 PF01417 ENTH: ENTH domain; I 30.9 2.9E+02 0.0062 22.3 8.9 94 321-423 18-120 (125)
486 COG4068 Uncharacterized protei 30.8 59 0.0013 22.6 2.6 28 71-98 7-34 (64)
487 PF07923 N1221: N1221-like pro 30.7 97 0.0021 29.6 5.3 56 260-316 60-126 (293)
488 COG1592 Rubrerythrin [Energy p 30.6 34 0.00074 29.6 1.9 11 71-81 148-158 (166)
489 KOG2807 RNA polymerase II tran 30.5 37 0.00081 32.4 2.2 40 38-79 332-374 (378)
490 PF07923 N1221: N1221-like pro 30.2 93 0.002 29.7 5.0 54 217-271 60-127 (293)
491 KOG1087 Cytosolic sorting prot 30.2 1.5E+02 0.0033 30.4 6.6 72 350-424 40-112 (470)
492 PF14631 FancD2: Fanconi anaem 30.1 3.4E+02 0.0074 32.3 10.3 99 225-335 443-542 (1426)
493 PF03130 HEAT_PBS: PBS lyase H 29.9 54 0.0012 18.6 2.1 13 365-377 2-14 (27)
494 KOG0396 Uncharacterized conser 29.8 43 0.00092 32.7 2.5 47 36-83 330-379 (389)
495 KOG0309 Conserved WD40 repeat- 29.8 34 0.00074 36.4 2.0 39 37-77 1029-1069(1081)
496 COG3492 Uncharacterized protei 29.7 31 0.00067 26.2 1.3 13 57-69 42-54 (104)
497 PRK11595 DNA utilization prote 29.4 39 0.00084 30.9 2.2 39 38-83 7-45 (227)
498 PF14631 FancD2: Fanconi anaem 29.3 6.9E+02 0.015 29.8 12.5 73 217-293 473-545 (1426)
499 COG2176 PolC DNA polymerase II 29.1 44 0.00096 37.8 2.8 41 32-85 910-952 (1444)
500 KOG3842 Adaptor protein Pellin 28.7 54 0.0012 31.1 2.9 53 31-84 336-415 (429)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=274.47 Aligned_cols=287 Identities=13% Similarity=0.096 Sum_probs=245.6
Q ss_pred ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHH
Q 038250 120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILST 198 (444)
Q Consensus 120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~ 198 (444)
+...+..+++.|.+.. .+.+.+..|+..|+.+++.++++|..+++ .|+||.|+.+|.+ + +..+++.|+.+
T Consensus 11 ~~~~v~~Lve~L~s~~--ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s---g----~~~vk~nAaaa 81 (2102)
T PLN03200 11 TLASVAQCIEQLRAKS--SSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS---G----TLGAKVNAAAV 81 (2102)
T ss_pred hHHHHHHHHHHHHccc--CCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC---C----CHHHHHHHHHH
Confidence 3567888999998653 15688999999999999999999999996 8999999999953 2 58899999999
Q ss_pred HHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--hhhHHHhhcccccHHHHHHHhcCCC--C
Q 038250 199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD--HRKVNVLLDIEGAIEPLFKLIKEPI--C 274 (444)
Q Consensus 199 L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~--~~~~~~i~~~~g~i~~Lv~ll~~~~--~ 274 (444)
|. +++.+++++..|+..|+||+|+.+|++++.+.|+.|+++|++|+..+ +.++..|+...|+||+|+.+++++. +
T Consensus 82 L~-nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 82 LG-VLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred HH-HHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence 99 89999999999999999999999999999999999999999996554 5566566567899999999999872 2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchh-HHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hhhHHHHhcCCCChHH
Q 038250 275 PTATKASLVVVYRTITSASATEKPI-QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DYGRGDAYNNSLIFPV 352 (444)
Q Consensus 275 ~~~~~~a~~aL~~L~~~~~~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~ 352 (444)
..+++.++.+|+||+.+.+ ++ ..++++|+|+.|+++|.++++.+++.|+++|.+++.+ ++.+..+ +++|+||.
T Consensus 161 ~~L~~~Av~AL~nLs~~~e----n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aV-IeaGaVP~ 235 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTD----GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKV-LDAGAVKQ 235 (2102)
T ss_pred HHHHHHHHHHHHHHhcCcc----chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHH-HHCCCHHH
Confidence 2356778899999999987 66 4568999999999999999999999999999988865 5677777 89999999
Q ss_pred HHHHHhhc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCC--------ChHHHHHHHHHHHHHH
Q 038250 353 IVKKILRV-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGC--------ADKTKEHVSELLKLLN 423 (444)
Q Consensus 353 Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~--------~~~~k~~a~~ll~~l~ 423 (444)
|+++|.++ +..+++.|+++|.+||.+ +.+.+..+++.|+++.|++++.... +...++.|.+.|.+++
T Consensus 236 LV~LL~sg~~~~VRE~AA~AL~nLAs~----s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIc 311 (2102)
T PLN03200 236 LLKLLGQGNEVSVRAEAAGALEALSSQ----SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANIC 311 (2102)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHhcC----CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHh
Confidence 99999765 458899999999999994 5778888889999999999998541 2346899999998887
Q ss_pred hh
Q 038250 424 PH 425 (444)
Q Consensus 424 ~~ 425 (444)
+.
T Consensus 312 gg 313 (2102)
T PLN03200 312 GG 313 (2102)
T ss_pred CC
Confidence 63
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=6.3e-28 Score=268.48 Aligned_cols=281 Identities=19% Similarity=0.170 Sum_probs=237.9
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.++.|++.|.+. +...+..|++.|+.++..+++++..++++|+||+|+++|.+. +..++++|+++|. |
T Consensus 447 gIp~LV~LL~s~----s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-------~~~iqeeAawAL~-N 514 (2102)
T PLN03200 447 GVQLLISLLGLS----SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-------SQKAKEDSATVLW-N 514 (2102)
T ss_pred cHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHH-H
Confidence 467777777765 788999999999999998888999999999999999999532 5889999999999 6
Q ss_pred cCCChh-hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh----------------h--------------
Q 038250 203 FPLAGE-GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR----------------K-------------- 251 (444)
Q Consensus 203 l~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~----------------~-------------- 251 (444)
++.+++ ++..+.++|+|++|+++|++++.+.++.|+++|.+|+...+. .
T Consensus 515 La~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 515 LCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Confidence 665554 455666899999999999999999999999999999522110 0
Q ss_pred ------HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHH
Q 038250 252 ------VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK 325 (444)
Q Consensus 252 ------~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 325 (444)
........|+|+.|+++++++ ++..++.|+++|.+++.+.. .++..++..|+|++|+.+|.+++.++++.
T Consensus 595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~---d~~~avv~agaIpPLV~LLss~~~~v~ke 670 (2102)
T PLN03200 595 ASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQ---DLCESLATDEIINPCIKLLTNNTEAVATQ 670 (2102)
T ss_pred cchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCh---HHHHHHHHcCCHHHHHHHHhcCChHHHHH
Confidence 111112468999999999999 89999999999999998875 57888999999999999999999999999
Q ss_pred HHHHHHHhcCCh--hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHH
Q 038250 326 ALSVLDGLCSSD--YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLL 403 (444)
Q Consensus 326 a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll 403 (444)
++++|.+|+.+. +++..+ ++.|+|++|+++|...+..+.+.|+.+|.+|+.. .+...++.++|+|++|+++|
T Consensus 671 AA~AL~nL~~~~~~~q~~~~-v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~-----~e~~~ei~~~~~I~~Lv~lL 744 (2102)
T PLN03200 671 SARALAALSRSIKENRKVSY-AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD-----PEVAAEALAEDIILPLTRVL 744 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHH-HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----chHHHHHHhcCcHHHHHHHH
Confidence 999999999533 333445 8899999999999888999999999999999995 56778888899999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHhhc
Q 038250 404 QVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 404 ~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
++| +++.|+.|+++|..+.++.
T Consensus 745 r~G-~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 745 REG-TLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HhC-ChHHHHHHHHHHHHHHhCC
Confidence 999 9999999999665555443
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.1e-28 Score=237.61 Aligned_cols=283 Identities=14% Similarity=0.164 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++.++..|... .++..+.+|+|+|.+++..+.+.-..++++|++|.++.+|.+. +..+++.|+++|.+
T Consensus 109 G~v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-------~~~v~eQavWALgN 178 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-------SADVREQAVWALGN 178 (514)
T ss_pred CcHHHHHHHHccC---CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-------cHHHHHHHHHHHhc
Confidence 5577888888755 3688999999999999999999999999999999999999643 58899999999995
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDL-SRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA 280 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 280 (444)
+...++..|..+.+.|++++|+.++...+. ....+++|+|.||+.+....-..- ....++|.|+.++.+. ++++...
T Consensus 179 Iagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~-~v~~iLp~L~~ll~~~-D~~Vl~D 256 (514)
T KOG0166|consen 179 IAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFD-VVAPILPALLRLLHST-DEEVLTD 256 (514)
T ss_pred cccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHH-HHHHHHHHHHHHHhcC-CHHHHHH
Confidence 555566789999999999999999987754 788899999999987653222212 2257899999999998 8999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250 281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~ 360 (444)
|+|||++|+.+.. +....++++|+++.|+++|...+..++-.|+.++.|++.+++.+.+.+.+.|++|.|..++.+.
T Consensus 257 a~WAlsyLsdg~n---e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s 333 (514)
T KOG0166|consen 257 ACWALSYLTDGSN---EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS 333 (514)
T ss_pred HHHHHHHHhcCCh---HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC
Confidence 9999999997764 5788889999999999999999999999999999999999999999999999999999998854
Q ss_pred -ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 361 -SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 361 -~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
.+..++.|+|++.|++. |+.+.++.++.+|.+|.|+.+|+.+ .-++|+.|+|++.++..
T Consensus 334 ~~~~ikkEAcW~iSNItA----G~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 334 PKESIKKEACWTISNITA----GNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS 393 (514)
T ss_pred cchhHHHHHHHHHHHhhc----CCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence 55688999999999999 6788999999999999999999999 88999999997776643
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.1e-27 Score=229.16 Aligned_cols=280 Identities=15% Similarity=0.113 Sum_probs=240.9
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCc-ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESD-RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
..+..+.+ ++.+.+.++..+++.+..... .....++..|.||.+|.+|... . ++.++.+|+++|..+.+
T Consensus 70 ~~~~~~~S----~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~--~----~~~lq~eAAWaLTnIAs 139 (514)
T KOG0166|consen 70 LMLAALYS----DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD--D----NPTLQFEAAWALTNIAS 139 (514)
T ss_pred HHHHHHhC----CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC--C----ChhHHHHHHHHHHHHhc
Confidence 34444444 488889999999998775433 3455667779999999999531 2 58899999999998888
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
++.+....++++|++|.++++|.+.+..++++|+|+|+|++...+..|..+ ...|++++|+.++.........+++.|+
T Consensus 140 gtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v-l~~g~l~pLl~~l~~~~~~~~lRn~tW~ 218 (514)
T KOG0166|consen 140 GTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV-LSCGALDPLLRLLNKSDKLSMLRNATWT 218 (514)
T ss_pred CchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH-HhhcchHHHHHHhccccchHHHHHHHHH
Confidence 888889999999999999999999999999999999999988888999988 6789999999999988434799999999
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA 364 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~ 364 (444)
|.|||.+.. + ....-.-..++|.|..+|.+.|+++...|+|+|++|+.++..+.++++++|++|.||++|...+..+
T Consensus 219 LsNlcrgk~--P-~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v 295 (514)
T KOG0166|consen 219 LSNLCRGKN--P-SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKV 295 (514)
T ss_pred HHHHHcCCC--C-CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccc
Confidence 999999974 1 2222233679999999999999999999999999999888888888899999999999999989999
Q ss_pred HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
+-.|++++.|++. |++...+.++..|+++.|..+|.....+.+|+.|.|++.++.
T Consensus 296 ~~PaLRaiGNIvt----G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 296 VTPALRAIGNIVT----GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred ccHHHhhccceee----ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence 9999999999999 678888889999999999999996657789999999777764
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-27 Score=219.10 Aligned_cols=279 Identities=16% Similarity=0.184 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++.+.+ |..+ .|...+++|..+|.++... .+||+.++.+|++|.||.++++. |.++|..++.++.
T Consensus 167 GaL~pltr-Laks---kdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~-------d~dvqyycttais- 233 (550)
T KOG4224|consen 167 GALEPLTR-LAKS---KDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSG-------DLDVQYYCTTAIS- 233 (550)
T ss_pred cchhhhHh-hccc---chhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccC-------ChhHHHHHHHHhh-
Confidence 34444555 4443 4888999999999999854 67999999999999999999643 7899999999999
Q ss_pred hcCCChhhhhhcccCC--cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250 202 LFPLAGEGLTYLGSAS--SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK 279 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 279 (444)
++..+..+|+.+++++ .+|.||++++++++.+|.+|..+|++| +.+.++...| .+.|.+|.+|++|+++ .-....
T Consensus 234 nIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl-asdt~Yq~ei-v~ag~lP~lv~Llqs~-~~plil 310 (550)
T KOG4224|consen 234 NIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL-ASDTEYQREI-VEAGSLPLLVELLQSP-MGPLIL 310 (550)
T ss_pred hhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh-cccchhhhHH-HhcCCchHHHHHHhCc-chhHHH
Confidence 8999999999999887 999999999999999999999999999 4566777777 5679999999999988 455667
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh
Q 038250 280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~ 358 (444)
....+++|++.+.- |-..|+++|.+.+||++|+.+ +++++-+|..+|++|+...+....++.++|+||.+..++.
T Consensus 311 asVaCIrnisihpl----Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 311 ASVACIRNISIHPL----NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred HHHHHHhhcccccC----cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh
Confidence 78889999999987 999999999999999999977 4559999999999999866555555599999999999999
Q ss_pred hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 359 RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 359 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
.+.-.+++...+++..|+.. +..+....+.|.++.|+..+.+. +.+++-+|++.|-.|+...
T Consensus 387 D~pvsvqseisac~a~Lal~-----d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 387 DGPVSVQSEISACIAQLALN-----DNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDV 448 (550)
T ss_pred cCChhHHHHHHHHHHHHHhc-----cccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhh
Confidence 98888998888888898884 44556666999999999999998 9999999999887777643
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.2e-27 Score=216.47 Aligned_cols=275 Identities=18% Similarity=0.196 Sum_probs=237.8
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
..++..+.+. ..+.+..|+..|.+|+.. +.||..+...|++.+|.++-++ +|..+|..++.+|. ++.
T Consensus 129 ~~Li~qmmtd----~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks-------kdirvqrnatgaLl-nmT 195 (550)
T KOG4224|consen 129 DLLILQMMTD----GVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS-------KDIRVQRNATGALL-NMT 195 (550)
T ss_pred HHHHHHhcCC----CcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc-------chhhHHHHHHHHHH-Hhh
Confidence 3445444443 557889999999999988 6699999999999999995532 26779999999999 899
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccc--cHHHHHHHhcCCCChHHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEG--AIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g--~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
...+||..++.+|++|.||++|++++..+|..++.+|.++ ..+..+|+.+ .+.| .+|.||++++++ ++.++-.|.
T Consensus 196 hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd~~~Rk~L-aqaep~lv~~Lv~Lmd~~-s~kvkcqA~ 272 (550)
T KOG4224|consen 196 HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVDRRARKIL-AQAEPKLVPALVDLMDDG-SDKVKCQAG 272 (550)
T ss_pred hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh-hhhHHHHHHH-HhcccchHHHHHHHHhCC-ChHHHHHHH
Confidence 9999999999999999999999999999999999999999 6778888888 4467 999999999999 899999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-C
Q 038250 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-S 361 (444)
Q Consensus 283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~ 361 (444)
-+|+||+.+.+ .+..++++|++|.++++|+++.....-..+..+.|++-++-+-.-+ .++|.+.+||.+|.-+ +
T Consensus 273 lALrnlasdt~----Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI-~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 273 LALRNLASDTE----YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI-ADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred HHHhhhcccch----hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce-ecccchhHHHHHHhcCCc
Confidence 99999999987 9999999999999999999888888888999999999987766666 9999999999999875 6
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+..|-+|..+|++|+.. ++..+..+.++|+|++|.+++..+ +-.++..-.+.+..++=.
T Consensus 348 EeiqchAvstLrnLAas----se~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAAS----SEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN 406 (550)
T ss_pred hhhhhhHHHHHHHHhhh----hhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc
Confidence 67999999999999984 467788888999999999999999 555555555555555533
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=1e-26 Score=212.80 Aligned_cols=292 Identities=15% Similarity=0.147 Sum_probs=241.5
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHH-hccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKW-TKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l-~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+++.+...|.+. |.+.+..|....+.+ +++.....+.++++|+||.+|++++... ..-.+-+|.++|.+
T Consensus 72 elp~lt~~l~Sd----Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q------~~mlqfEAaWalTN 141 (526)
T COG5064 72 ELPQLTQQLFSD----DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ------RDMLQFEAAWALTN 141 (526)
T ss_pred hhHHHHHHHhhh----HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc------hhHHHHHHHHHHhh
Confidence 456666666665 889999999999875 4555567889999999999999996431 34567799999995
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC-ChHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI-CPTATKA 280 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~ 280 (444)
+.+........++++|++|.++++|.+++.+++++|+|+|+|++..++..|..+ -..|++.+|+.++.+.. +....++
T Consensus 142 iaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~v-L~~galeplL~ll~ss~~~ismlRn 220 (526)
T COG5064 142 IASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV-LQCGALEPLLGLLLSSAIHISMLRN 220 (526)
T ss_pred hccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHH-HhcCchHHHHHHHHhccchHHHHHH
Confidence 555555666677899999999999999999999999999999987778888888 67899999999987552 2466777
Q ss_pred HHHHHHHHhcCCCC---------------------------------------CCchhHHHHhcCcHHHHHHHhhccccc
Q 038250 281 SLVVVYRTITSASA---------------------------------------TEKPIQKFVDMGLVSLLLEMLVDAQRS 321 (444)
Q Consensus 281 a~~aL~~L~~~~~~---------------------------------------~~~~~~~i~~~g~v~~Lv~lL~~~~~~ 321 (444)
+.|+|.|||.+..- ..+....+++.|..+.|+++|.+.+..
T Consensus 221 ~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~ 300 (526)
T COG5064 221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK 300 (526)
T ss_pred hHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccc
Confidence 77777777766421 014567788999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH
Q 038250 322 LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL 401 (444)
Q Consensus 322 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ 401 (444)
++..|+..+.|+...++.+.+++.+.|+++.+-.+|.+..+.+++.|+|++.|+.. |+.+.++.+++++.+|+|+.
T Consensus 301 iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA----Gnteqiqavid~nliPpLi~ 376 (526)
T COG5064 301 IQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA----GNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred ccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc----CCHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999888778899999999999999 67889999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhccCCC
Q 038250 402 LLQVGCADKTKEHVSELLKLLNPHRARLE 430 (444)
Q Consensus 402 ll~~~~~~~~k~~a~~ll~~l~~~~~~~~ 430 (444)
+|.+. .-++|+.|-|++.....+..+.|
T Consensus 377 lls~a-e~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 377 LLSSA-EYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred HHHHH-HHHHHHHHHHHHHhhhccccCCc
Confidence 99998 77777777775555544444444
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=7.1e-23 Score=187.78 Aligned_cols=286 Identities=12% Similarity=0.113 Sum_probs=239.1
Q ss_pred CCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHH
Q 038250 118 PVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILS 197 (444)
Q Consensus 118 ~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~ 197 (444)
.++.+.++.++..|+++ +.+++.+|+|+|.+++.+++..|..+.++|++.+|+.+|.+. ..+..+.+.+.+
T Consensus 153 Vvd~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss-----~~~ismlRn~TW 223 (526)
T COG5064 153 VVDAGAVPLFIQLLSST----EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS-----AIHISMLRNATW 223 (526)
T ss_pred EEeCCchHHHHHHHcCc----hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc-----cchHHHHHHhHH
Confidence 34567889999999887 678999999999999999999999999999999999999643 124678999999
Q ss_pred HHHhhcCCCh---hhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCC
Q 038250 198 TLTLLFPLAG---EGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPIC 274 (444)
Q Consensus 198 ~L~~~l~~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 274 (444)
+|. +++... .+-..| ..++|.|.+++.+.++++...|+|+|.+|+....+....+ ...|..+.||++|.++ +
T Consensus 224 tLS-NlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av-ld~g~~~RLvElLs~~-s 298 (526)
T COG5064 224 TLS-NLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV-LDVGIPGRLVELLSHE-S 298 (526)
T ss_pred HHH-HhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH-HhcCCcHHHHHHhcCc-c
Confidence 999 554322 111122 4579999999999999999999999999954444555556 5579999999999998 7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHH
Q 038250 275 PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIV 354 (444)
Q Consensus 275 ~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 354 (444)
..++..|++.+.|+..+++ ..-+.+++.|+++++..+|++..+.+++.|+|+|+|+......+.+.+.++..+|+|+
T Consensus 299 a~iqtPalR~vGNIVTG~D---~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi 375 (526)
T COG5064 299 AKIQTPALRSVGNIVTGSD---DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLI 375 (526)
T ss_pred ccccCHHHHhhcCeeecCc---cceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHH
Confidence 8889999999999999986 3555678999999999999999889999999999999988877777779999999999
Q ss_pred HHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 355 KKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 355 ~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
++|....-..++.|+|++.|...+.-. .++.++-.++.|++.+|..+|.-. +.++-+.+...++.+
T Consensus 376 ~lls~ae~k~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~eni 441 (526)
T COG5064 376 HLLSSAEYKIKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAIENI 441 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHHHHH
Confidence 999888888999999999999876543 367788888999999999999887 666777776654444
No 9
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.85 E-value=8.8e-21 Score=192.20 Aligned_cols=304 Identities=14% Similarity=0.088 Sum_probs=247.6
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
++++.+..|.+. ++..+..|...|..+|..+.+.|..+.+.|+|+.||.+|++. ..+++..|+++|+++
T Consensus 234 ~lpe~i~mL~~q----~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-------~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 234 TLPEVISMLMSQ----DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-------NDEVQRQACGALRNL 302 (717)
T ss_pred ccHHHHHHHhcc----ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-------cHHHHHHHHHHHHhh
Confidence 567888998876 788999999999999999999999999999999999999643 588999999999944
Q ss_pred cCCCh--hhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC------
Q 038250 203 FPLAG--EGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI------ 273 (444)
Q Consensus 203 l~~~~--~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~------ 273 (444)
+-... +|+..|.+.++|+.++++|+. ++.++++..+.+|+|| +..|..+..| . ..++..|..-+-.+-
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNL-SS~D~lK~~i-i-~~al~tLt~~vI~P~Sgw~~~ 379 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNL-SSNDALKMLI-I-TSALSTLTDNVIIPHSGWEEE 379 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcc-cchhHHHHHH-H-HHHHHHHHHhhcccccccCCC
Confidence 43333 589999999999999999987 6999999999999999 5668888888 3 477888877654220
Q ss_pred -------ChHHHHHHHHHHHHHhcCCCCCCchhHHHHh-cCcHHHHHHHhhc------cccchHHHHHHHHHHhcCChh-
Q 038250 274 -------CPTATKASLVVVYRTITSASATEKPIQKFVD-MGLVSLLLEMLVD------AQRSLCEKALSVLDGLCSSDY- 338 (444)
Q Consensus 274 -------~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~~- 338 (444)
+.++..++.++|+|++...+ +.++++-+ .|.|+.|+..+.. .+...+|+|+.+|.||+..-+
T Consensus 380 ~~~~~~~~~~vf~n~tgcLRNlSs~~~---eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~ 456 (717)
T KOG1048|consen 380 PAPRKAEDSTVFRNVTGCLRNLSSAGQ---EAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEA 456 (717)
T ss_pred CcccccccceeeehhhhhhccccchhH---HHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhh
Confidence 25688999999999998554 47888876 6999999999872 377889999999999987443
Q ss_pred -------------------------------hHHHH---------------------hcCCCChHHHHHHHhh-cChhHH
Q 038250 339 -------------------------------GRGDA---------------------YNNSLIFPVIVKKILR-VSDLAT 365 (444)
Q Consensus 339 -------------------------------~~~~i---------------------~~~~g~i~~Lv~ll~~-~~~~~~ 365 (444)
-++++ ..+.-+|.....+|.. .++...
T Consensus 457 Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~Tl 536 (717)
T KOG1048|consen 457 EVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTL 536 (717)
T ss_pred hcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHH
Confidence 00010 0111245555555654 367788
Q ss_pred HHHHHHHHHHccccccchHHHHHHH-HhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCcccccCCCCCC
Q 038250 366 EFAVSILWKLCKNEEREEKTAFAEA-LQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDSMDFKDLKRPF 444 (444)
Q Consensus 366 ~~a~~~L~~L~~~~~~~~~~~~~~~-~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~~~~~~~~~l~~~~ 444 (444)
|.++++|.||+...+.+.......+ .++.++++|+++|+.+ ++.+.+.++.+|++++...+|++.|+.|.+++|++.|
T Consensus 537 EasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~L 615 (717)
T KOG1048|consen 537 EASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCL 615 (717)
T ss_pred HHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhC
Confidence 9999999999998887655556666 4899999999999999 9999999999999999999999999999999987653
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=1.3e-17 Score=173.03 Aligned_cols=255 Identities=15% Similarity=0.181 Sum_probs=213.3
Q ss_pred hHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHH
Q 038250 141 AGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMR 220 (444)
Q Consensus 141 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~ 220 (444)
+..+.++..|.+++.+ +.+...|.+.|+|+.|+++|++. +.++...+++.|. .++...+||..+++.|+|+
T Consensus 264 qLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~-------n~ellil~v~fLk-kLSi~~ENK~~m~~~giV~ 334 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRE-------NEELLILAVTFLK-KLSIFKENKDEMAESGIVE 334 (708)
T ss_pred HHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCC-------CHHHHHHHHHHHH-HHcCCHHHHHHHHHcCCHH
Confidence 3456677778888854 67889999999999999999642 5789999999999 8999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhH
Q 038250 221 CMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQ 300 (444)
Q Consensus 221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 300 (444)
.|++++.+++.+.+..+.++|+|| |.++++|..| ...|+||.|+.+|.++ ..+..++.+|++||.+++ ++.
T Consensus 335 kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~~~R~~m-V~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~----~r~ 405 (708)
T PF05804_consen 335 KLLKLLPSENEDLVNVALRLLFNL-SFDPELRSQM-VSLGLIPKLVELLKDP---NFREVALKILYNLSMDDE----ARS 405 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHh-CcCHHHHHHH-HHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHh----hHH
Confidence 999999999999999999999999 7899999999 6689999999999866 456679999999999886 899
Q ss_pred HHHhcCcHHHHHHHhhc-cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcccc
Q 038250 301 KFVDMGLVSLLLEMLVD-AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNE 379 (444)
Q Consensus 301 ~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 379 (444)
.+...+++|.|+++|-. +++.+...+++++.||+.+..+...+ .+.|+++.|++...+..+ .....++.|++.+.
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm-~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLM-CEGNGLQSLMKRALKTRD---PLLLKLIRNISQHD 481 (708)
T ss_pred HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHH-HhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcC
Confidence 99999999999998865 46667778899999999988888777 678999999998766443 23457899999985
Q ss_pred ccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 380 EREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 380 ~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
++ ..... .+.|..|+.++..+.++...-.+..+|+++.
T Consensus 482 ~~----~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 482 GP----LKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred ch----HHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 32 22222 4689999999888767777777777777775
No 11
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3.4e-17 Score=150.48 Aligned_cols=283 Identities=14% Similarity=0.169 Sum_probs=229.0
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
.+.....+++.+|-.+... +..+.++-+...++.+|.... ++.++....++.+...+-.++.||+.+++.+
T Consensus 119 ~~~~~l~ksL~al~~lt~~----qpdl~da~g~~vvv~lL~~~~-----~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHK----QPDLFDAEAMAVVLKLLALKV-----ESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred CchhHHHHHHHHHHHhhcC----CcchhccccHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 4667788888888888754 345788888999999995432 2577888888888877888999999999999
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcch---------hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHH
Q 038250 218 SMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDH---------RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYR 287 (444)
Q Consensus 218 ~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~---------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~ 287 (444)
+++.+.+.|.. +...+...++++++.|...++ .+...| ...|++..|++.++-+.+|.....++.+|..
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~i-a~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTI-AKEGILTALTEALQAGIDPDSLVSLSTTLKA 268 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHH-HHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 99999977754 455677889999999955444 455666 3468999999999988789999999999999
Q ss_pred HhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-cc---chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh--cC
Q 038250 288 TITSASATEKPIQKFVDMGLVSLLLEMLVDA-QR---SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR--VS 361 (444)
Q Consensus 288 L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~---~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~--~~ 361 (444)
|+..++ .++.+++.|+++.|++++.+. +. .+.+.++.+|+.|+++++.+..+ ++.|+.+.++.++.. ++
T Consensus 269 lAVr~E----~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~I-V~~gg~~~ii~l~~~h~~~ 343 (461)
T KOG4199|consen 269 LAVRDE----ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTI-VEKGGLDKIITLALRHSDD 343 (461)
T ss_pred HHHHHH----HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHH-HHhcChHHHHHHHHHcCCC
Confidence 999987 999999999999999999863 32 35688999999999999999999 899999999999876 47
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCC-hHHHHHHHHHHHHH-HhhccCCCCCCcccccC
Q 038250 362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCA-DKTKEHVSELLKLL-NPHRARLECIDSMDFKD 439 (444)
Q Consensus 362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~-~~~k~~a~~ll~~l-~~~~~~~~~~~~~~~~~ 439 (444)
+.+.+.++.++.-||..+ ++.-+.+++.|+-...++.|+..+- ..++++|.+++|++ .+.++++.-+.+.+.++
T Consensus 344 p~Vi~~~~a~i~~l~LR~----pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~ 419 (461)
T KOG4199|consen 344 PLVIQEVMAIISILCLRS----PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK 419 (461)
T ss_pred hHHHHHHHHHHHHHHhcC----cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH
Confidence 888899999999999964 5577888899999999999998743 45777777755555 55566665554444433
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.76 E-value=2e-16 Score=164.33 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL 268 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l 268 (444)
..+...+..+|. |++.+..+...+.+.|+++.|+.+|.+++.++...++.+|.+| |...+|+..|+ ..|+|++|+++
T Consensus 263 eqLlrv~~~lLl-NLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~~ENK~~m~-~~giV~kL~kL 339 (708)
T PF05804_consen 263 EQLLRVAFYLLL-NLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKL-SIFKENKDEMA-ESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHH-HHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCHHHHHHHH-HcCCHHHHHHH
Confidence 446667777888 9999999999999999999999999999999999999999999 78899999994 57999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250 269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSL 348 (444)
Q Consensus 269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 348 (444)
+.++ +...+..++++|.||+.+.+ ++..|++.|+||.|+.+|.++ ..+..++.+|++|+..++.+..+ ...+
T Consensus 340 l~s~-~~~l~~~aLrlL~NLSfd~~----~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f-~~Td 411 (708)
T PF05804_consen 340 LPSE-NEDLVNVALRLLFNLSFDPE----LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMF-AYTD 411 (708)
T ss_pred hcCC-CHHHHHHHHHHHHHhCcCHH----HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHH-hhcc
Confidence 9988 78999999999999999987 999999999999999999754 45677999999999999998888 7889
Q ss_pred ChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 349 IFPVIVKKILRV-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 349 ~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
++|.+++++.++ ++.++..+++++.||+.. .+..+.+++.|+++.|++..-...++ ....++|+++.|.
T Consensus 412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-----~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 412 CIPQLMQMLLENSEEEVQLELIALLINLALN-----KRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHD 481 (708)
T ss_pred hHHHHHHHHHhCCCccccHHHHHHHHHHhcC-----HHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcC
Confidence 999999998775 555666788899999984 67788888999999999865544232 2334777777665
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1e-14 Score=134.30 Aligned_cols=280 Identities=10% Similarity=0.129 Sum_probs=218.6
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF 203 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l 203 (444)
..-+++.|.... ++.+.....+..++.-|-.++.||+.+.+.|+.+.+.+.|. .++ ...+.+++.++++.++
T Consensus 147 ~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~--~~g----k~~~VRel~~a~r~l~ 218 (461)
T KOG4199|consen 147 MAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLN--REG----KTRTVRELYDAIRALL 218 (461)
T ss_pred HHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHc--ccC----ccHHHHHHHHHHHHhc
Confidence 344556554432 36677888889999999888999999999999999998884 234 2357777888888444
Q ss_pred CCChhhh----------hhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC
Q 038250 204 PLAGEGL----------TYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP 272 (444)
Q Consensus 204 ~~~~~~~----------~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~ 272 (444)
.+++.| ..|+..|++..|+..|..+ ++.+...++.+|..| ...++.++.| .+.|++..|++++.+.
T Consensus 219 -~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l-AVr~E~C~~I-~e~GGl~tl~~~i~d~ 295 (461)
T KOG4199|consen 219 -TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL-AVRDEICKSI-AESGGLDTLLRCIDDS 295 (461)
T ss_pred -CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH-HHHHHHHHHH-HHccCHHHHHHHHhhh
Confidence 444333 4677788999999999876 788889999999999 5778899999 5579999999999875
Q ss_pred CC---hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh--ccccchHHHHHHHHHHhcCChhhHHHHhcCC
Q 038250 273 IC---PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV--DAQRSLCEKALSVLDGLCSSDYGRGDAYNNS 347 (444)
Q Consensus 273 ~~---~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 347 (444)
.. .+..+.++.+|+.|+.+++ ++..||+.|+.+.++.++. ..++.+.+.++.++..|+-.........+++
T Consensus 296 n~~~~r~l~k~~lslLralAG~Ds----vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~ 371 (461)
T KOG4199|consen 296 NEQGNRTLAKTCLSLLRALAGSDS----VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEA 371 (461)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCc----hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhc
Confidence 22 3466889999999999887 9999999999999999986 4588899999999999996555555544899
Q ss_pred CChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 348 LIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 348 g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
|+-...|+.|+.. -..+|.+|++.+.|+..++ .+.. ...-+.+++.|+.--... .+..+..|-..||-+.-
T Consensus 372 G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs----~~~~-~~~l~~GiE~Li~~A~~~-h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 372 GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS----AENR-TILLANGIEKLIRTAKAN-HETCEAAAKAALRDLGC 444 (461)
T ss_pred chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh----hhcc-chHHhccHHHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence 9999999999874 4568899999999999863 2333 333355668888766666 66677777778887753
No 14
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.69 E-value=1.9e-17 Score=123.39 Aligned_cols=72 Identities=43% Similarity=0.915 Sum_probs=61.6
Q ss_pred CCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
+|++|.||||+++|.|||++++||+|++.||++|+ .++..+||.|+++++..++.||..+++.|++|+.++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l-~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWL-EQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHH-CTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHH-HcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 57899999999999999999999999999999999 5568899999999999999999999999999998874
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=4.1e-15 Score=157.25 Aligned_cols=277 Identities=15% Similarity=0.094 Sum_probs=214.2
Q ss_pred HHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhc--cc-cc--ccchHHHHHHHHHHHhhcCCChhhhhhcc-cCCc
Q 038250 145 DLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFS--KT-CL--DENVSVLEEILSTLTLLFPLAGEGLTYLG-SASS 218 (444)
Q Consensus 145 ~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~--~~-~~--~~~~~~~~~a~~~L~~~l~~~~~~~~~i~-~~g~ 218 (444)
.|+..|.+++.+ +++|..|-+.|++.++.+||.-.. .+ .+ .....++..|..+|.++.-.+..||..+- ..|.
T Consensus 317 aA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 677888888754 789999999999999999884210 11 00 13457899999999944445556777665 5799
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCc
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEK 297 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 297 (444)
|+.+|..|.+...++.+--+.+|+||+=..+ ..++.+ ...|-+..|+...-........+..+.|||||+.|.. +
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvL-rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct---e 471 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVL-RETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT---E 471 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHH-HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc---c
Confidence 9999999999999999999999999953333 456666 7789999998774433256788999999999998875 6
Q ss_pred hhHHHHh-cCcHHHHHHHhhcc----ccchHHHHHHHHHHhcC---ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHH
Q 038250 298 PIQKFVD-MGLVSLLLEMLVDA----QRSLCEKALSVLDGLCS---SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAV 369 (444)
Q Consensus 298 ~~~~i~~-~g~v~~Lv~lL~~~----~~~~~~~a~~~L~~L~~---~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~ 369 (444)
|+..|.. -|++..||.+|... .-.++|.|-++|.|.+. ..+...+|+.+..++..|+..|++.+-.+..+++
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 9999977 69999999999843 45788999999999875 3345556668899999999999998999999999
Q ss_pred HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCC
Q 038250 370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLEC 431 (444)
Q Consensus 370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~ 431 (444)
++||||+..+ .+..+.+.+.|+|+-|..|+.+. ...+-+.++..|+++-.++.-+.|
T Consensus 552 GTLWNLSAR~----p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RPAkq~ 608 (2195)
T KOG2122|consen 552 GTLWNLSARS----PEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRPAKQA 608 (2195)
T ss_pred hhhhhhhcCC----HHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCchhhh
Confidence 9999999954 45555566999999999999999 555555555545444445533333
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.65 E-value=1e-14 Score=148.42 Aligned_cols=286 Identities=14% Similarity=0.120 Sum_probs=224.2
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc--cchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR--NKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
|..++..|.+. ..+++.+|+.+|++|...+.. |+-.|.+.|+|+.|+++|+.. . |.++++.+..+|+
T Consensus 277 I~kLv~Ll~~~----~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t--~----D~ev~e~iTg~LW- 345 (717)
T KOG1048|consen 277 IPKLVALLDHR----NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHT--Q----DDEVRELITGILW- 345 (717)
T ss_pred HHHHHHHhcCC----cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhh--c----chHHHHHHHHHHh-
Confidence 55677777665 778999999999999977665 999999999999999999642 2 6889999999999
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcC--------------CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSG--------------DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--------------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ 267 (444)
|++..+..|..|+ ..++..|-.-+-.. ..++-.+++..|+|+++...+.++.+.+-.|.|..|+.
T Consensus 346 NLSS~D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~ 424 (717)
T KOG1048|consen 346 NLSSNDALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLF 424 (717)
T ss_pred cccchhHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHH
Confidence 9998877776665 44555555533211 24566789999999987788999999888899999998
Q ss_pred HhcC-----CCChHHHHHHHHHHHHHh-----------------------------------------------------
Q 038250 268 LIKE-----PICPTATKASLVVVYRTI----------------------------------------------------- 289 (444)
Q Consensus 268 ll~~-----~~~~~~~~~a~~aL~~L~----------------------------------------------------- 289 (444)
.+++ ..+...++++.-.|+||+
T Consensus 425 ~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~ 504 (717)
T KOG1048|consen 425 SIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPER 504 (717)
T ss_pred HHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccc
Confidence 8761 113345555555555553
Q ss_pred -------------------------------------------cCCCC-CCchhHHH-HhcCcHHHHHHHhhccccchHH
Q 038250 290 -------------------------------------------TSASA-TEKPIQKF-VDMGLVSLLLEMLVDAQRSLCE 324 (444)
Q Consensus 290 -------------------------------------------~~~~~-~~~~~~~i-~~~g~v~~Lv~lL~~~~~~~~~ 324 (444)
...-- ....+..+ ....++++|+++|+.++..++.
T Consensus 505 ~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~ 584 (717)
T KOG1048|consen 505 ATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVR 584 (717)
T ss_pred ccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHH
Confidence 32210 01234444 5678999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc------ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250 325 KALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV------SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398 (444)
Q Consensus 325 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~ 398 (444)
.++.+|.||+.+..++..+ . .++++.||+.|... +++....++.+|+++.. .+......+.+.++++.
T Consensus 585 s~a~~LrNls~d~rnk~li-g-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~----~~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 585 SAAGALRNLSRDIRNKELI-G-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR----KNVLNAKDLLEIKGIPK 658 (717)
T ss_pred HHHHHHhhhccCchhhhhh-h-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH----HhHHHHHHHHhccChHH
Confidence 9999999999999988888 5 68999999999764 25666888999999997 35778888999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250 399 LLLLLQVGCADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~ 427 (444)
|+.+..+..+++.-+.|.-+|..|-.+.+
T Consensus 659 L~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 659 LRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999997788999999888888876654
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.62 E-value=6.5e-14 Score=129.68 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=169.4
Q ss_pred HhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038250 164 IVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLRE 243 (444)
Q Consensus 164 i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~ 243 (444)
+.+.+-++.|+.+|++. +|+.+++.|+.++. +.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.|
T Consensus 8 ~l~~~~l~~Ll~lL~~t------~dp~i~e~al~al~-n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N 80 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST------EDPFIQEKALIALG-NSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN 80 (254)
T ss_pred CcCHHHHHHHHHHHhcC------CChHHHHHHHHHHH-hhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 46677889999999642 26899999999999 888899999999999999999999999999999999999999
Q ss_pred HHhcchhhHHHhhcccccHHHHHHHhcC-CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccch
Q 038250 244 IVSSDHRKVNVLLDIEGAIEPLFKLIKE-PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSL 322 (444)
Q Consensus 244 L~s~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~ 322 (444)
+ +.+.+++..| . ..|+.+++...+ +.+..++..++++|.||+..++ ++..+. +.++.++.+|..++..+
T Consensus 81 l-s~~~en~~~I-k--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~----~~~~l~--~~i~~ll~LL~~G~~~~ 150 (254)
T PF04826_consen 81 L-SVNDENQEQI-K--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND----YHHMLA--NYIPDLLSLLSSGSEKT 150 (254)
T ss_pred c-CCChhhHHHH-H--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc----hhhhHH--hhHHHHHHHHHcCChHH
Confidence 9 7788889888 4 357777775444 3467899999999999998876 555554 47999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccc
Q 038250 323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKN 378 (444)
Q Consensus 323 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~ 378 (444)
+..++++|.+|+.++.....+ ..+++++.++.++.+. +......++..+.||..+
T Consensus 151 k~~vLk~L~nLS~np~~~~~L-l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 151 KVQVLKVLVNLSENPDMTREL-LSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHHHhccCHHHHHHH-HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999998888 6778999999988775 566778889999999664
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.59 E-value=1.6e-13 Score=127.15 Aligned_cols=200 Identities=14% Similarity=0.156 Sum_probs=173.8
Q ss_pred cccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 213 LGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 213 i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
+.+++-++.|+.+|+.. ++.+++.|..++.+. +..+.+++.| ...|+++.+..+|.++ ++.++..|+++|.|++.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~I-r~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDII-RDLGGISLIGSLLNDP-NPSVREKALNALNNLSVN 84 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHH-HHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCC
Confidence 35678899999999965 899999999999999 6788999999 6689999999999999 899999999999999999
Q ss_pred CCCCCchhHHHHhcCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHH
Q 038250 292 ASATEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAV 369 (444)
Q Consensus 292 ~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~ 369 (444)
.+ |+..+-. .++.+++.+.+. +..++..++.+|.+|+..++.+..+ . +.++.++.++.+++...+.+++
T Consensus 85 ~e----n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~--~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 85 DE----NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-A--NYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred hh----hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-H--hhHHHHHHHHHcCChHHHHHHH
Confidence 87 7777643 578888766543 7788999999999999877777776 3 5799999999999999999999
Q ss_pred HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCC
Q 038250 370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL 429 (444)
Q Consensus 370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~ 429 (444)
++|.+|+.+ +...++++.++++..++.+++...+...-..+..+...+++++...
T Consensus 156 k~L~nLS~n-----p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 156 KVLVNLSEN-----PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccC-----HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 999999994 7788999999999999999999867778888888888888877533
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.56 E-value=3.7e-15 Score=108.29 Aligned_cols=63 Identities=51% Similarity=0.905 Sum_probs=58.4
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHH
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDW 100 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~ 100 (444)
+|.||||+++|++||+++|||+||+.||.+|+. + ...||.|+++++..++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~-~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLL-S-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHH-H-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 478999999999999999999999999999993 3 67899999999888999999999999876
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.47 E-value=5.7e-13 Score=141.38 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=191.0
Q ss_pred hHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC-CChh-hhhhcccCC
Q 038250 141 AGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP-LAGE-GLTYLGSAS 217 (444)
Q Consensus 141 ~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~-~~~~-~~~~i~~~g 217 (444)
..+++|+++|.+|...+..||..+.. .|+++.+|.-|.+. ..+++.-...+|+ |++ ..+. .+..+.+.|
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-------peeL~QV~AsvLR-NLSWRAD~nmKkvLrE~G 437 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-------PEELLQVYASVLR-NLSWRADSNMKKVLRETG 437 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-------hHHHHHHHHHHHH-hccccccccHHHHHHhhh
Confidence 36789999999999988889988875 69999999999642 2366777778888 554 4443 466777899
Q ss_pred cHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCCC
Q 038250 218 SMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP---ICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 218 ~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~~~~~ 293 (444)
-+..|+. .|+..........+.+||||+.+..+||..|-...|++.+||.+|.-. ....+.+.|-+.|+|++++-.
T Consensus 438 sVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA 517 (2195)
T KOG2122|consen 438 SVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA 517 (2195)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh
Confidence 9988887 455555566678899999998888899999988889999999999854 246789999999999987755
Q ss_pred CCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHH
Q 038250 294 ATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL 372 (444)
Q Consensus 294 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L 372 (444)
+++..++.+.+..++..|++.|.+.+-.++.+++++||||+. +++.++.+ .+.|+|+.|-.++.+....+.+-++.+|
T Consensus 518 t~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~L-wD~gAv~mLrnLIhSKhkMIa~GSaaAL 596 (2195)
T KOG2122|consen 518 TCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQML-WDDGAVPMLRNLIHSKHKMIAMGSAAAL 596 (2195)
T ss_pred ccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHH-HhcccHHHHHHHHhhhhhhhhhhHHHHH
Confidence 445588888999999999999999999999999999999986 56666666 9999999999999998888889999999
Q ss_pred HHHccccc
Q 038250 373 WKLCKNEE 380 (444)
Q Consensus 373 ~~L~~~~~ 380 (444)
.||-.+-|
T Consensus 597 rNLln~RP 604 (2195)
T KOG2122|consen 597 RNLLNFRP 604 (2195)
T ss_pred HHHhcCCc
Confidence 99987643
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.43 E-value=2.1e-12 Score=106.25 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=106.7
Q ss_pred cccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250 213 LGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 213 i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 292 (444)
+++.|+++.|+.+|.+++...++.++++|.+++..+++....+ ...|+++.|+.+|.++ ++.++..++++|.+|+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAV-VEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 5578999999999999999999999999999977768888888 4569999999999988 8999999999999999887
Q ss_pred CCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 293 SATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 293 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
. .....+.+.|+++.|+++|.+++..+++.++++|.+|+.
T Consensus 81 ~---~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 E---DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred H---HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 4 467777889999999999999999999999999999874
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.41 E-value=1.3e-10 Score=119.32 Aligned_cols=271 Identities=14% Similarity=0.167 Sum_probs=203.2
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC
Q 038250 127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA 206 (444)
Q Consensus 127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~ 206 (444)
+...|...+.+.++.++.-++..|.+++.+++.....+.+.+.++.++..|.. + +..+...|..+|. .++.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~---~----d~~Va~~A~~~L~-~l~~~ 149 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD---P----DLSVAKAAIKALK-KLASH 149 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC---C----cHHHHHHHHHHHH-HHhCC
Confidence 33344333333488899999999999998877667788889999999999942 2 6889999999999 66666
Q ss_pred hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHH
Q 038250 207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVY 286 (444)
Q Consensus 207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 286 (444)
+.....+...+.+..|..++...+..+|..+..++.++++.+++....+ ...|+++.++..|+++ |.-++.+++..|.
T Consensus 150 ~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~-~~sgll~~ll~eL~~d-DiLvqlnalell~ 227 (503)
T PF10508_consen 150 PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV-VNSGLLDLLLKELDSD-DILVQLNALELLS 227 (503)
T ss_pred chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH-HhccHHHHHHHHhcCc-cHHHHHHHHHHHH
Confidence 6666777788889999999988888999999999999988899999888 5579999999999996 8889999999999
Q ss_pred HHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--cc---c-hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH---
Q 038250 287 RTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QR---S-LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI--- 357 (444)
Q Consensus 287 ~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~---~-~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll--- 357 (444)
.|+..+. +...+.+.|+++.|+.++.+. ++ . ..-..+....+++..... .+. +..|.+++.+
T Consensus 228 ~La~~~~----g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~---~~~p~~~~~l~~~ 298 (503)
T PF10508_consen 228 ELAETPH----GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVL---ELYPAFLERLFSM 298 (503)
T ss_pred HHHcChh----HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHH---HHHHHHHHHHHHH
Confidence 9999766 899999999999999999754 22 1 223344566666663111 121 2344444444
Q ss_pred -hhcChhHHHHHHHHHHHHccccccchHHHHHHH-H-hhChHHHHHH----HHhcCCChHHHHHHHHHHHHH
Q 038250 358 -LRVSDLATEFAVSILWKLCKNEEREEKTAFAEA-L-QVGAFQKLLL----LLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 358 -~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-~-~~g~l~~Ll~----ll~~~~~~~~k~~a~~ll~~l 422 (444)
.+.+...+..|..+|+.|+.. .+....+ . ..+.+...+. ...++ +..+|-++...+..+
T Consensus 299 ~~s~d~~~~~~A~dtlg~igst-----~~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 299 LESQDPTIREVAFDTLGQIGST-----VEGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASI 364 (503)
T ss_pred hCCCChhHHHHHHHHHHHHhCC-----HHHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 445778889999999999974 3444444 3 3344444444 44444 567788887766666
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=9.8e-12 Score=102.27 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=104.9
Q ss_pred ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250 258 IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 258 ~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 337 (444)
..|+++.|+.++.++ ++..+..++++|.+++.+.+ .....+++.|+++.|+++|.++++.++..++++|++|+...
T Consensus 5 ~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 5 QAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 469999999999988 78999999999999999843 48888999999999999999999999999999999999977
Q ss_pred hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 338 YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 338 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
......+.+.|+++.+++++...+..+++.|+++|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 6655555888999999999998889999999999999873
No 24
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.35 E-value=3.6e-13 Score=88.18 Aligned_cols=40 Identities=43% Similarity=0.856 Sum_probs=30.9
Q ss_pred cccccccCcCceecCCcchhcHHHHHHHHHhcCC--CCCCCC
Q 038250 39 CPISLDLMKDPVTLSTGITYDRENIEKWIHEDGN--ITCPVT 78 (444)
Q Consensus 39 Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~--~~CP~c 78 (444)
||||+++|++||+++|||+||+.||.+|++..+. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999943322 579987
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=3.2e-12 Score=124.09 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=72.0
Q ss_pred CCCCCCCcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHH
Q 038250 22 GVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWC 101 (444)
Q Consensus 22 ~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~ 101 (444)
|...+.+....++..+.|+||.++|.+|++++|||+||..||..|+ .....||.|+..+....+.+|..+.++|+.|.
T Consensus 12 w~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l--~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 12 WLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCL--SNQPKCPLCRAEDQESKLRSNWLVSEIVESFK 89 (397)
T ss_pred hccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHH--hCCCCCCCCCCccccccCccchHHHHHHHHHH
Confidence 6666767778889999999999999999999999999999999999 34458999999998778999999999999997
Q ss_pred Hhc
Q 038250 102 VEN 104 (444)
Q Consensus 102 ~~~ 104 (444)
...
T Consensus 90 ~~R 92 (397)
T TIGR00599 90 NLR 92 (397)
T ss_pred Hhh
Confidence 654
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.28 E-value=7e-10 Score=105.86 Aligned_cols=277 Identities=8% Similarity=0.029 Sum_probs=203.3
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
.|.+...+..++|.+.|.++.++|..+.+.||-..++++|+++.......+.+...-+.+.|.+-+-.+++.+..+++.|
T Consensus 99 ~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~g 178 (604)
T KOG4500|consen 99 PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAG 178 (604)
T ss_pred CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcc
Confidence 36778899999999999999999999999999999999997652111112345666677788844445667888999999
Q ss_pred cHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250 218 SMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 218 ~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 294 (444)
+++.|+..+.-+ +.+.-+......+||.+...+ ..... .......-|++++.+..++...+-....|...+.++.
T Consensus 179 Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~-~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~- 256 (604)
T KOG4500|consen 179 VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFC-KDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL- 256 (604)
T ss_pred cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhh-ccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc-
Confidence 999999988654 677777777777887655444 33344 4567888889999877667788888888889988876
Q ss_pred CCchhHHHHhcCcHHHHHHHhhc-cccc-------hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 295 TEKPIQKFVDMGLVSLLLEMLVD-AQRS-------LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 295 ~~~~~~~i~~~g~v~~Lv~lL~~-~~~~-------~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
.+-.+++.|.+..++++++. .+-. .-..++.....|...++.-..+..+...+..+++-+.+.+.....
T Consensus 257 ---Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t 333 (604)
T KOG4500|consen 257 ---VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLIT 333 (604)
T ss_pred ---eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHH
Confidence 89999999999999999985 2221 223444444445555555555533333677777777777777888
Q ss_pred HHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC----CChHHHHHHHHHHHHHHh
Q 038250 367 FAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG----CADKTKEHVSELLKLLNP 424 (444)
Q Consensus 367 ~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~----~~~~~k~~a~~ll~~l~~ 424 (444)
.+.-+++|+++. +.....+++.|.+..|++++... .+-+.+-.+..+||.+.-
T Consensus 334 ~g~LaigNfaR~-----D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 334 MGSLAIGNFARR-----DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 888899999994 67788889999999999976652 133445555557777753
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.27 E-value=1.4e-09 Score=103.83 Aligned_cols=283 Identities=13% Similarity=0.077 Sum_probs=195.2
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhccccc-ccchHHHHHHHHHHHhhcC
Q 038250 126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCL-DENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~-~~~~~~~~~a~~~L~~~l~ 204 (444)
.+++.+.+.. .++...-....|...+ +++..+-.+++.|.+..++++++.+++-+. .++......+......++.
T Consensus 227 ~l~~ll~~~v---~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 227 MLLQLLPSMV---REDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred HHHHHHHHhh---ccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 4444444443 2223333344444444 566788899999999999999987533211 1223344455555553444
Q ss_pred CChhhhhhcccC-CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC----CChHHHH
Q 038250 205 LAGEGLTYLGSA-SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP----ICPTATK 279 (444)
Q Consensus 205 ~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~~~~ 279 (444)
+ ++.-+.+... ..+..+++.+.|++......++.+|+|++ ..++++..+ ...|++..|+.+|... .+.+.+.
T Consensus 303 G-DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfa-R~D~~ci~~-v~~~~~nkL~~~l~~~~~vdgnV~~qh 379 (604)
T KOG4500|consen 303 G-DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFA-RRDDICIQL-VQKDFLNKLISCLMQEKDVDGNVERQH 379 (604)
T ss_pred C-chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhh-ccchHHHHH-HHHHHHHHHHHHHHHhcCCCccchhHH
Confidence 4 4444444444 48999999999999999999999999995 566677777 4579999999998642 3688999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh-hHHHHhcCCCChHHHHHHHh
Q 038250 280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY-GRGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~ll~ 358 (444)
+++.||+|+..--. |+..++.+|++++++..+....+.++-.-+.+|+.+....+ .-.++..+...+..||+--.
T Consensus 380 A~lsALRnl~IPv~----nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsk 455 (604)
T KOG4500|consen 380 ACLSALRNLMIPVS----NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSK 455 (604)
T ss_pred HHHHHHHhccccCC----chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhh
Confidence 99999999999987 99999999999999999999999999999999998865443 22333333334444444333
Q ss_pred hcChh-HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 359 RVSDL-ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 359 ~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
+.+.. +....-+.|..+-+|+.. .+.+..+.+.|+|..++..+... .-..+..|...|-.+
T Consensus 456 s~D~aGv~gESnRll~~lIkHs~~--kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 456 SPDFAGVAGESNRLLLGLIKHSKY--KDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLST 517 (604)
T ss_pred CCccchhhhhhhHHHHHHHHhhHh--hhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHH
Confidence 33222 456677778888877543 55666666899999998877766 555555555544443
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.24 E-value=6.3e-09 Score=106.98 Aligned_cols=284 Identities=15% Similarity=0.121 Sum_probs=207.9
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
-+..++..|... |..+...|+..|..+++.. .....+...+.+..|.+++... +..++..+..++..+
T Consensus 120 l~~~i~~~L~~~----d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~-------~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 120 LLPLIIQCLRDP----DLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQS-------SDIVRCRVYELLVEI 187 (503)
T ss_pred HHHHHHHHHcCC----cHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhcc-------CHHHHHHHHHHHHHH
Confidence 344555666554 8889999999999999864 4566788888899999999532 466888899999877
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC-Ch---H-H
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI-CP---T-A 277 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~---~-~ 277 (444)
.+.+++....+.+.|.++.++..|++++.-+|.+++.+|..|+. .+.+.+.+ ...|+++.|+.++.+.. ++ . .
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL-~~~gi~~~L~~~l~~~~~dp~~~~~~ 265 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYL-EQQGIFDKLSNLLQDSEEDPRLSSLL 265 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHH-HhCCHHHHHHHHHhccccCCcccchh
Confidence 78889999999999999999999999889999999999999965 77888888 56799999999998652 22 1 1
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHH-hcCCCChHHHHHH
Q 038250 278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDA-YNNSLIFPVIVKK 356 (444)
Q Consensus 278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i-~~~~g~i~~Lv~l 356 (444)
.-..+....+++...+ ..-.-.-...+..|.+++.+.+...+..|+.+|+.++...+|+..+ ....+.+..+++.
T Consensus 266 l~g~~~f~g~la~~~~----~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~ 341 (503)
T PF10508_consen 266 LPGRMKFFGNLARVSP----QEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKA 341 (503)
T ss_pred hhhHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHH
Confidence 2223355566776532 2211112345566677777889999999999999999999999998 5555666666665
Q ss_pred Hhh----cChhHHHHHHHHHHHHccccccchHHHHH-------HHHhhChHH-HHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 357 ILR----VSDLATEFAVSILWKLCKNEEREEKTAFA-------EALQVGAFQ-KLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 357 l~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-------~~~~~g~l~-~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
+.. +....+-.++.+|.++-...+....+.+. .....+-.. .++.+++.. -+.+|-.+-.+++-+..
T Consensus 342 ~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 342 IGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhc
Confidence 543 45567888999999984432221112111 222344444 667777766 89999999998888876
Q ss_pred h
Q 038250 425 H 425 (444)
Q Consensus 425 ~ 425 (444)
+
T Consensus 421 ~ 421 (503)
T PF10508_consen 421 Q 421 (503)
T ss_pred C
Confidence 5
No 29
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.22 E-value=9.7e-12 Score=107.65 Aligned_cols=61 Identities=26% Similarity=0.476 Sum_probs=51.0
Q ss_pred CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh--------------cCCCCCCCCCcccCCCCCCccH
Q 038250 31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE--------------DGNITCPVTNRVLTSFEPIPNH 91 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~--------------~~~~~CP~c~~~~~~~~l~~n~ 91 (444)
....+++.||||.+.+++|+++.|||.||+.||.+|+.. ++...||.|+..++...+.|.+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 345667999999999999999999999999999999842 1246899999999887777654
No 30
>PRK09687 putative lyase; Provisional
Probab=99.20 E-value=2.6e-09 Score=101.23 Aligned_cols=212 Identities=13% Similarity=0.065 Sum_probs=151.7
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS 218 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~ 218 (444)
++..+..|++.|..+-..... ..-+++.|..++. .+. ++.|+..|+.+|.. +...... -...+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~--~D~----d~~VR~~A~~aLG~-~~~~~~~----~~~~a 129 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRC------QDNVFNILNNLAL--EDK----SACVRASAINATGH-RCKKNPL----YSPKI 129 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHh--cCC----CHHHHHHHHHHHhc-ccccccc----cchHH
Confidence 777888888888887532210 1225677776642 222 67888888888883 3221110 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
++.+...+.+.+..+|..|+.+|..+ . + ..+++.|+.+|+++ ++.++..|+.+|..+..+.+
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg~~-~-~----------~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~----- 191 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALSVI-N-D----------EAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNP----- 191 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHhcc-C-C----------HHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCH-----
Confidence 66677777778888998888888766 1 1 23578899999887 78899999999998833221
Q ss_pred hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
.+++.|+.+|.+.+..++..|+.+|..+ .+..+||.|++.+..++ +...|+.+|..+..
T Consensus 192 -------~~~~~L~~~L~D~~~~VR~~A~~aLg~~-----------~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~- 250 (280)
T PRK09687 192 -------DIREAFVAMLQDKNEEIRIEAIIGLALR-----------KDKRVLSVLIKELKKGT--VGDLIIEAAGELGD- 250 (280)
T ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHcc-----------CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-
Confidence 4688899999999999999999999875 33467899999887654 55678888888776
Q ss_pred cccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250 379 EEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK 420 (444)
Q Consensus 379 ~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~ 420 (444)
.-+++.|..++....++.++.+|.+.++
T Consensus 251 --------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 --------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred --------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 3578999999985558999999988765
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.19 E-value=1.1e-11 Score=113.76 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=72.0
Q ss_pred CCCCCCCCcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHH
Q 038250 21 PGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDW 100 (444)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~ 100 (444)
.|+++..+-...+..-+.|.||.++|+-|++++||||||..||..|+ ..+..||.|...+....+..|..+.++|+.|
T Consensus 8 dw~~tsipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L--~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 8 DWPPTSIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFL--SYKPQCPTCCVTVTESDLRNNRILDEIVKSL 85 (442)
T ss_pred cCCCccCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHh--ccCCCCCceecccchhhhhhhhHHHHHHHHH
Confidence 45555445555667779999999999999999999999999999999 7788999999999998999999999999999
Q ss_pred HHhcc
Q 038250 101 CVENR 105 (444)
Q Consensus 101 ~~~~~ 105 (444)
.....
T Consensus 86 ~~~R~ 90 (442)
T KOG0287|consen 86 NFARN 90 (442)
T ss_pred HHHHH
Confidence 77653
No 32
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.8e-08 Score=102.75 Aligned_cols=307 Identities=13% Similarity=0.186 Sum_probs=219.3
Q ss_pred CCCCCCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHH
Q 038250 114 TPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLE 193 (444)
Q Consensus 114 ~p~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~ 193 (444)
.|+.+-..+.|+.|+..+.++. =.+.++.|+..|..+++. +|..++..| +++|++.|.. |.. |+++..
T Consensus 14 ~~k~~s~aETI~kLcDRvessT---L~eDRR~A~rgLKa~srk---YR~~Vga~G-mk~li~vL~~--D~~---D~E~ik 81 (970)
T KOG0946|consen 14 PPKQQSAAETIEKLCDRVESST---LLEDRRDAVRGLKAFSRK---YREEVGAQG-MKPLIQVLQR--DYM---DPEIIK 81 (970)
T ss_pred CCccccHHhHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHH---HHHHHHHcc-cHHHHHHHhh--ccC---CHHHHH
Confidence 3444545678999999988774 578899999999999865 777777776 7999999963 332 789999
Q ss_pred HHHHHHHhhcCCCh------hhh----------h-hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHh
Q 038250 194 EILSTLTLLFPLAG------EGL----------T-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVL 255 (444)
Q Consensus 194 ~a~~~L~~~l~~~~------~~~----------~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i 255 (444)
.|+.++..+++.++ +.+ . .|-..+-|..|+..+...+-.+|..+...|.+|.+.- .+.+..+
T Consensus 82 ~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 82 YALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred HHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 99999994444442 222 1 2335788999999999999999999999999997654 4777777
Q ss_pred hcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh-cCcHHHHHHHhhc-c--c-cchHHHHHHHH
Q 038250 256 LDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD-MGLVSLLLEMLVD-A--Q-RSLCEKALSVL 330 (444)
Q Consensus 256 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL~~-~--~-~~~~~~a~~~L 330 (444)
....-+|..|+.+|.+. ...++-.++-.|..|..++. +.+++|. .++...|+.++.. | + .-+++.|+.+|
T Consensus 162 l~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~----~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll 236 (970)
T KOG0946|consen 162 LVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNS----SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILL 236 (970)
T ss_pred HHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77888999999999988 57788999999999999887 6666665 8899999999974 2 3 35789999999
Q ss_pred HHhcCChhhHHHHhcCCCChHHHHHHHhh---cCh--------hHH--HHHHHHHHHHcccccc-ch-HHHHHHHHhhCh
Q 038250 331 DGLCSSDYGRGDAYNNSLIFPVIVKKILR---VSD--------LAT--EFAVSILWKLCKNEER-EE-KTAFAEALQVGA 395 (444)
Q Consensus 331 ~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~---~~~--------~~~--~~a~~~L~~L~~~~~~-~~-~~~~~~~~~~g~ 395 (444)
-||-..+.....+..+.+-||.|.++|.. ++. +++ -.++.++..+....-. +. ..+...+...++
T Consensus 237 ~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~l 316 (970)
T KOG0946|consen 237 NNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHL 316 (970)
T ss_pred HHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcch
Confidence 99998777777776999999999987753 221 111 2334444444432111 11 122234558999
Q ss_pred HHHHHHHHhcC-CChHHHHHHHH-HHHHHHhhccCCCCCCcccc
Q 038250 396 FQKLLLLLQVG-CADKTKEHVSE-LLKLLNPHRARLECIDSMDF 437 (444)
Q Consensus 396 l~~Ll~ll~~~-~~~~~k~~a~~-ll~~l~~~~~~~~~~~~~~~ 437 (444)
+..|..++-+. -...+...+.- +-..++.++.+-.-+...++
T Consensus 317 l~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~ 360 (970)
T KOG0946|consen 317 LDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTA 360 (970)
T ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccC
Confidence 99999966554 23344444333 55555666555555533333
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.14 E-value=6.7e-09 Score=100.53 Aligned_cols=254 Identities=16% Similarity=0.188 Sum_probs=170.5
Q ss_pred HHHHhccCcccchhHhhc---CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc------CCcHH
Q 038250 150 IKKWTKESDRNKRCIVDN---GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS------ASSMR 220 (444)
Q Consensus 150 L~~l~~~~~~~~~~i~~~---G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~------~g~i~ 220 (444)
+..+-+.....|..+++. +.+..++++|+.. . ++.++...++..+..++..++.....+.. .....
T Consensus 34 ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~-~----~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~ 108 (312)
T PF03224_consen 34 IKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL-S----SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYS 108 (312)
T ss_dssp HHHHHHHHH-------------------HHHHHH--------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HH
T ss_pred HHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc-c----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHH
Confidence 333333333445445553 4577888999653 1 25889999999999888777755554443 23688
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCCCCc
Q 038250 221 CMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI---CPTATKASLVVVYRTITSASATEK 297 (444)
Q Consensus 221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~~ 297 (444)
+++.++.+++..++..|+..|..|.+..+...... . .+.++.++..+++.. +...+..++.+|.+|...++
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~---- 182 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-V-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE---- 182 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-H-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-H-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch----
Confidence 88899999999999999999999976665544443 2 477889998888642 23566899999999999887
Q ss_pred hhHHHHhcCcHHHHHHHh------h-ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHH
Q 038250 298 PIQKFVDMGLVSLLLEML------V-DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAV 369 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL------~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~ 369 (444)
.|..+.+.|+++.|+.+| . ..+..++-.++-+++.|+..++....+ .+.+.|+.|+++++.. .+.+...++
T Consensus 183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~-~~~~~i~~L~~i~~~~~KEKvvRv~l 261 (312)
T PF03224_consen 183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEEL-NKKYLIPLLADILKDSIKEKVVRVSL 261 (312)
T ss_dssp HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHH-HTTSHHHHHHHHHHH--SHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHH-hccchHHHHHHHHHhcccchHHHHHH
Confidence 999999999999999999 2 225678899999999999999999998 7777999999999875 778889999
Q ss_pred HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC-CChHHHHHHHHH
Q 038250 370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG-CADKTKEHVSEL 418 (444)
Q Consensus 370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~-~~~~~k~~a~~l 418 (444)
++|.||....+ ......|+..|+++.+-.+.... .++++.+--..+
T Consensus 262 a~l~Nl~~~~~---~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 262 AILRNLLSKAP---KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHHTTSSSS---TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHhccH---HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999998644 23677777877766555554443 256666654443
No 34
>PRK09687 putative lyase; Provisional
Probab=99.13 E-value=5.1e-09 Score=99.22 Aligned_cols=223 Identities=12% Similarity=-0.006 Sum_probs=162.1
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF 203 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l 203 (444)
+..|+..|.+. +..++..|+.+|..+-. ..+++.+..++.+ . ++.++..|+.+|. .+
T Consensus 25 ~~~L~~~L~d~----d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~---~----d~~vR~~A~~aLg-~l 81 (280)
T PRK09687 25 DDELFRLLDDH----NSLKRISSIRVLQLRGG-----------QDVFRLAIELCSS---K----NPIERDIGADILS-QL 81 (280)
T ss_pred HHHHHHHHhCC----CHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhC---C----CHHHHHHHHHHHH-hc
Confidence 45677777665 78899999999987742 2267778888742 2 6899999999999 44
Q ss_pred CCChhhhhhcccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250 204 PLAGEGLTYLGSASSMRCMVWF-LKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 204 ~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
...+.. ...+++.|..+ ++..++.++..|+.+|+++....... ...++..|...+.++ ++.++..++
T Consensus 82 g~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~D~-~~~VR~~a~ 149 (280)
T PRK09687 82 GMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAFDK-STNVRFAVA 149 (280)
T ss_pred CCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhhCC-CHHHHHHHH
Confidence 432221 23467888877 56668999999999999994222111 123456677778787 789999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD 362 (444)
Q Consensus 283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 362 (444)
++|..+.. ..+++.|+.+|.+.+..++..|+.+|..+.. .+..+++.|+.++...+.
T Consensus 150 ~aLg~~~~--------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~~L~D~~~ 206 (280)
T PRK09687 150 FALSVIND--------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY---------DNPDIREAFVAMLQDKNE 206 (280)
T ss_pred HHHhccCC--------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHhcCCCh
Confidence 99965531 1279999999999999999999999999833 223457788898888889
Q ss_pred hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 363 LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
.++..|+.+|..+-. .-+++.|+..|+.+ . ++..|+..|..+
T Consensus 207 ~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~-~--~~~~a~~ALg~i 248 (280)
T PRK09687 207 EIRIEAIIGLALRKD---------------KRVLSVLIKELKKG-T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHHHHHHccCC---------------hhHHHHHHHHHcCC-c--hHHHHHHHHHhc
Confidence 999999999987654 35778888888776 3 444455444444
No 35
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=7.7e-08 Score=93.25 Aligned_cols=259 Identities=13% Similarity=0.114 Sum_probs=179.2
Q ss_pred HHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHH
Q 038250 144 RDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMV 223 (444)
Q Consensus 144 ~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv 223 (444)
.-...-|..|+-- .+|+..|.+.|.|..|+++... ++++++...+..|. +++.+...|..++..|.+|.|+
T Consensus 322 ~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~-------~h~dL~~~tl~Llf-NlSFD~glr~KMv~~GllP~l~ 392 (791)
T KOG1222|consen 322 TLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPI-------QHPDLRKATLMLLF-NLSFDSGLRPKMVNGGLLPHLA 392 (791)
T ss_pred HHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCC-------CCHHHHHHHHHHhh-hccccccccHHHhhccchHHHH
Confidence 3333444455544 4689999999999999999942 26888888888888 9999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc---------------------------------
Q 038250 224 WFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK--------------------------------- 270 (444)
Q Consensus 224 ~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~--------------------------------- 270 (444)
.+|.+++ -..-|...|.++ |.+++.+..+ .....|+.|.+.+-
T Consensus 393 ~ll~~d~--~~~iA~~~lYh~-S~dD~~K~Mf-ayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqg 468 (791)
T KOG1222|consen 393 SLLDSDT--KHGIALNMLYHL-SCDDDAKAMF-AYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQG 468 (791)
T ss_pred HHhCCcc--cchhhhhhhhhh-ccCcHHHHHH-HHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcc
Confidence 9997664 223467777777 6677666666 33466665554432
Q ss_pred ----------------------------------------------CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh
Q 038250 271 ----------------------------------------------EPICPTATKASLVVVYRTITSASATEKPIQKFVD 304 (444)
Q Consensus 271 ----------------------------------------------~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~ 304 (444)
...+.+..-.++++|.||...+- .....+.+
T Consensus 469 L~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl---dw~~ilq~ 545 (791)
T KOG1222|consen 469 LDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL---DWAKILQS 545 (791)
T ss_pred hHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC---CHHHHHhh
Confidence 11123344445555555555443 13334445
Q ss_pred cCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccc
Q 038250 305 MGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEE 380 (444)
Q Consensus 305 ~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~ 380 (444)
...||-+-..|..+ ..+++-..+-+++.++. ++....++..+|.|+.|+++|+.. ++...-..+.++..+-.|
T Consensus 546 ~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-- 622 (791)
T KOG1222|consen 546 ENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-- 622 (791)
T ss_pred ccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH--
Confidence 67777777777654 44566666777777776 445555558899999999999874 455555667777777775
Q ss_pred cchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 381 REEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 381 ~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+..+.-++ +...-..|+.+|... +..+|+-+-..|-.++.+
T Consensus 623 ---e~tr~~miket~~~AylIDLMHDk-N~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 623 ---ELTRRLMIKETALGAYLIDLMHDK-NAEIRKVCDNALDIIAEH 664 (791)
T ss_pred ---HHHHHHHHhhccchHHHHHHHhcc-cHHHHHHHHHHHHHHHHh
Confidence 44555566 445556889999888 888888888888777765
No 36
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.01 E-value=2.1e-10 Score=74.26 Aligned_cols=38 Identities=47% Similarity=0.932 Sum_probs=32.4
Q ss_pred cccccccCcCc-eecCCcchhcHHHHHHHHHhcCCCCCCCC
Q 038250 39 CPISLDLMKDP-VTLSTGITYDRENIEKWIHEDGNITCPVT 78 (444)
Q Consensus 39 Cpic~~~~~~P-v~~~cg~~~c~~ci~~~~~~~~~~~CP~c 78 (444)
||||.+.+.+| +.++|||+||+.|+.+|+ +. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~-~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYL-EK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHH-HC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHH-HC-cCCCcCC
Confidence 89999999999 567999999999999999 44 6889987
No 37
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.1e-10 Score=102.92 Aligned_cols=82 Identities=11% Similarity=0.234 Sum_probs=57.7
Q ss_pred ccccccCCCCCCCCCCCCCCCC--CCCcCCCC-CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 4 SWKRLRGGRGRRAGKKQPGVES--GGEMELTT-PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
+|.++++...+....+.--.+. ....+..+ +..+.|.+|++...+|-.++|||.||..||..|. .....||.||.
T Consensus 204 s~~q~~~s~~e~~~e~~~~~~~~~~s~~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~--~ek~eCPlCR~ 281 (293)
T KOG0317|consen 204 SFLQHKRSSTESIEESKLNHSKLEDSNSLSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWC--SEKAECPLCRE 281 (293)
T ss_pred HHHhcccccccccccccccccchhhccCCccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHH--ccccCCCcccc
Confidence 6677777555544422111111 22233333 4449999999999999999999999999999999 45556999999
Q ss_pred ccCCCCC
Q 038250 81 VLTSFEP 87 (444)
Q Consensus 81 ~~~~~~l 87 (444)
.+++..+
T Consensus 282 ~~~pskv 288 (293)
T KOG0317|consen 282 KFQPSKV 288 (293)
T ss_pred cCCCcce
Confidence 8876543
No 38
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.8e-10 Score=100.28 Aligned_cols=58 Identities=29% Similarity=0.509 Sum_probs=50.1
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCC-CCCCCCCcccCCCCCCccH
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGN-ITCPVTNRVLTSFEPIPNH 91 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~-~~CP~c~~~~~~~~l~~n~ 91 (444)
-..|.|.||++.-+|||++.|||-||+.||++|+....+ ..||+|+..++...++|-+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 445999999999999999999999999999999954443 6789999999888777754
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.95 E-value=1.6e-10 Score=80.42 Aligned_cols=60 Identities=28% Similarity=0.477 Sum_probs=34.0
Q ss_pred CCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHH
Q 038250 34 PNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMI 97 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i 97 (444)
++.+.|++|.++|++||.+ .|.|.||+.||.+.+ + ..||+|..+....+++.|..+.++|
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~---~-~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCI---G-SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGT---T-TB-SSS--B-S-SS----HHHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhc---C-CCCCCcCChHHHHHHHhhhhhhccC
Confidence 3457999999999999976 899999999998766 2 2499999999888999999888775
No 40
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.5e-08 Score=99.36 Aligned_cols=208 Identities=15% Similarity=0.089 Sum_probs=166.8
Q ss_pred chHHHHHHHHHHHhhcCCC-hhhhhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250 188 NVSVLEEILSTLTLLFPLA-GEGLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL 265 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L 265 (444)
|+..|..|+.-|..+++.. ++.-..+--...+|.||.+|+.. +.++.-.||++|.+|+..-|.....+ +..++||.|
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v-V~~~aIPvl 259 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV-VDEHAIPVL 259 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee-ecccchHHH
Confidence 5777888888888777654 44444444567899999999876 79999999999999988888888877 668999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC--ChhhHHHH
Q 038250 266 FKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS--SDYGRGDA 343 (444)
Q Consensus 266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i 343 (444)
+.-|..=...++.+.++.||-.|++.+ -..+.++|++-+.+..|.-.+..++..|+++-.|+|. .++.-.-+
T Consensus 260 ~~kL~~IeyiDvAEQ~LqALE~iSR~H------~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v 333 (1051)
T KOG0168|consen 260 LEKLLTIEYIDVAEQSLQALEKISRRH------PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV 333 (1051)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhhc------cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH
Confidence 987765446789999999999999875 4788999999999999988888999999999999996 34444444
Q ss_pred hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 344 YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 344 ~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
..++|.|-.+|...+....|.++-.+..++..-.. .++-..++...|.|....+|+...
T Consensus 334 ---~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 334 ---MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-GPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred ---HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-ChHHHHHHhchhHHHHHHHHHhcC
Confidence 26899999999887888888888888887654332 366777788888888877777655
No 41
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.9e-08 Score=97.38 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=151.9
Q ss_pred HHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC
Q 038250 193 EEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP 272 (444)
Q Consensus 193 ~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~ 272 (444)
+.|+..|. +++.+-..-..+.....+..||..|..++.+.-......|..| |...+|+..+ ...|++..|++++...
T Consensus 281 rva~ylLl-NlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf~eNK~~M-~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 281 RVAVYLLL-NLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKL-SIFDENKIVM-EQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHH-HHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHh-hhhccchHHH-HhccHHHHHHHhcCCC
Confidence 34455555 6666555555667788899999999999999999999999999 7889999999 5689999999999988
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHH
Q 038250 273 ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPV 352 (444)
Q Consensus 273 ~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~ 352 (444)
.++.++..+..|.|++.+.. ++..++..|.+|.|..+|.+... ..-|+..|+.++.++..+..+ ....+|+.
T Consensus 358 -h~dL~~~tl~LlfNlSFD~g----lr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mf-ayTdci~~ 429 (791)
T KOG1222|consen 358 -HPDLRKATLMLLFNLSFDSG----LRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMF-AYTDCIKL 429 (791)
T ss_pred -CHHHHHHHHHHhhhcccccc----ccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHH-HHHHHHHH
Confidence 89999999999999999987 99999999999999999975533 244899999999987777777 77899999
Q ss_pred HHHHHhhcCh-hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH
Q 038250 353 IVKKILRVSD-LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL 401 (444)
Q Consensus 353 Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ 401 (444)
+.+.+.+++. ++...-+..-.|||.+ .++.+.+++..++..|++
T Consensus 430 lmk~v~~~~~~~vdl~lia~ciNl~ln-----kRNaQlvceGqgL~~LM~ 474 (791)
T KOG1222|consen 430 LMKDVLSGTGSEVDLALIALCINLCLN-----KRNAQLVCEGQGLDLLME 474 (791)
T ss_pred HHHHHHhcCCceecHHHHHHHHHHHhc-----cccceEEecCcchHHHHH
Confidence 9999887643 3333333333577774 445555556666665554
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.1e-08 Score=91.20 Aligned_cols=186 Identities=19% Similarity=0.161 Sum_probs=154.1
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ 267 (444)
+.+-++.|+.-|. .+..+-+|-..+...|++.+++..|.+.+.++|+.|+++|+..+..++...+.+ .+.|+++.|+.
T Consensus 96 ~le~ke~ald~Le-~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v-~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLE-ELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQV-IELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHH-HHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHH-HHcccHHHHHH
Confidence 5677888888888 666677888889999999999999999999999999999999998999999988 55799999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc--cccchHHHHHHHHHHhcCChhhHHHHhc
Q 038250 268 LIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD--AQRSLCEKALSVLDGLCSSDYGRGDAYN 345 (444)
Q Consensus 268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 345 (444)
.|.+..+..++..|+.|+..|..+.. .....+...++...|..+|.+ .+...+..++.+|..|.........+..
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~---~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNK---PGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCc---HHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99977567888999999999999876 577888889999999999997 4677889999999999875554444535
Q ss_pred CCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 346 NSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 346 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
..|....++.+.......+.+.++.++..+...
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 556666666655556778888888887776653
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.90 E-value=5e-08 Score=94.45 Aligned_cols=216 Identities=13% Similarity=0.129 Sum_probs=152.0
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc------CchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250 126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN------GAVSVLAEAFETFSKTCLDENVSVLEEILSTL 199 (444)
Q Consensus 126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~------G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L 199 (444)
.+++.|... +.+.+..+..+.-+.++..+++...+.+.+. ....++++++.+ + |..++..|+.+|
T Consensus 59 ~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~---~----D~~i~~~a~~iL 129 (312)
T PF03224_consen 59 LFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR---N----DSFIQLKAAFIL 129 (312)
T ss_dssp ---HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S----S----SHHHHHHHHHHH
T ss_pred HHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC---C----CHHHHHHHHHHH
Confidence 344444443 1267899999999999999988666666652 256777776632 2 688999999999
Q ss_pred HhhcCCChhhhhhcccCCcHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh------
Q 038250 200 TLLFPLAGEGLTYLGSASSMRCMVWFLKS----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI------ 269 (444)
Q Consensus 200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll------ 269 (444)
..+++..+....... .+.++.++.+|++ ++.+.+..|+.+|.+| -..+++|..+ ...|+++.|+.++
T Consensus 130 t~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L-L~~~~~R~~f-~~~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 130 TSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL-LRSKEYRQVF-WKSNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH-HTSHHHHHHH-HTHHHHHHHHHHHH-----
T ss_pred HHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH-hCcchhHHHH-HhcCcHHHHHHHHHhhccc
Confidence 966666554333222 5678888888876 3456678899999999 5788999999 5589999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChh--hHHHHhcC
Q 038250 270 KEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDY--GRGDAYNN 346 (444)
Q Consensus 270 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~--~~~~i~~~ 346 (444)
.+..+...+-.++-++|-|+.+.+ ....+.+.+.|+.|+++++.. .+.+..-++++|.||...+. ....+ +.
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLSF~~~----~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~m-v~ 281 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLSFEPE----IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELM-VL 281 (312)
T ss_dssp ----HHHHHHHHHHHHHHHTTSHH----HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHH-HH
T ss_pred CCCCchhHHHHHHHHHHHHhcCHH----HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHH-HH
Confidence 344457899999999999999986 889999999999999999854 77899999999999998666 45555 55
Q ss_pred CCChHHHHHHHhh
Q 038250 347 SLIFPVIVKKILR 359 (444)
Q Consensus 347 ~g~i~~Lv~ll~~ 359 (444)
.|+++.+ +.|..
T Consensus 282 ~~~l~~l-~~L~~ 293 (312)
T PF03224_consen 282 CGLLKTL-QNLSE 293 (312)
T ss_dssp H-HHHHH-HHHHS
T ss_pred ccHHHHH-HHHhc
Confidence 5555444 44543
No 44
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.89 E-value=1.4e-09 Score=71.33 Aligned_cols=40 Identities=38% Similarity=0.986 Sum_probs=36.5
Q ss_pred cccccccCcCce-ecCCcchhcHHHHHHHHHhcCCCCCCCC
Q 038250 39 CPISLDLMKDPV-TLSTGITYDRENIEKWIHEDGNITCPVT 78 (444)
Q Consensus 39 Cpic~~~~~~Pv-~~~cg~~~c~~ci~~~~~~~~~~~CP~c 78 (444)
||||.+.+.+|+ +++|||+||..|+.+|+...+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 7899999999999999954677889987
No 45
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.9e-09 Score=90.75 Aligned_cols=55 Identities=22% Similarity=0.481 Sum_probs=44.4
Q ss_pred CCCCccccccccccCcC--ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 038250 32 TTPNHFRCPISLDLMKD--PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPI 88 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~--Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~ 88 (444)
.-.+-+.||||+.-+.+ ||.++|||.||+.||...+ +....||.|++.+..+++.
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~al--k~~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDAL--KNTNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHHHHH--HhCCCCCCcccccchhhhe
Confidence 33444999999999886 5667999999999999998 5556799999877766543
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.86 E-value=1.2e-09 Score=71.33 Aligned_cols=37 Identities=24% Similarity=0.693 Sum_probs=23.2
Q ss_pred cccccccCcC----ceecCCcchhcHHHHHHHHHhc--CCCCCC
Q 038250 39 CPISLDLMKD----PVTLSTGITYDRENIEKWIHED--GNITCP 76 (444)
Q Consensus 39 Cpic~~~~~~----Pv~~~cg~~~c~~ci~~~~~~~--~~~~CP 76 (444)
||||.+ |.+ |+.++|||+||+.|++++++.. +.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999533 357787
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.1e-07 Score=85.46 Aligned_cols=193 Identities=21% Similarity=0.218 Sum_probs=152.7
Q ss_pred cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250 228 SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL 307 (444)
Q Consensus 228 ~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~ 307 (444)
+.+.+-++.|..-|..++ .+-+|..-+ ...|++.+|+..++++ +..+++.|+++|...+.++. ..+..+.+.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl-~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP---~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDL-ISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNP---KSQEQVIELGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhH-hhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCH---HHHHHHHHccc
Confidence 346888899999999994 556777777 5679999999999988 89999999999999999875 67888999999
Q ss_pred HHHHHHHhhcc-ccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhh--cChhHHHHHHHHHHHHccccccch
Q 038250 308 VSLLLEMLVDA-QRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILR--VSDLATEFAVSILWKLCKNEEREE 383 (444)
Q Consensus 308 v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~ 383 (444)
++.|+.+|... +..++.+|+.+++.|.. ...+..++ ...+|...|...|.+ .+...+..++..+..|.....+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f-l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s-- 244 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF-LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS-- 244 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH-HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh--
Confidence 99999999854 55677999999999987 44567777 677889999999998 5778889999999999884332
Q ss_pred HHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH-HHHHHHhhccCCCCC
Q 038250 384 KTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE-LLKLLNPHRARLECI 432 (444)
Q Consensus 384 ~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~-ll~~l~~~~~~~~~~ 432 (444)
....+...|....++.+.... ...+++.|.. ++..+.....+.+|+
T Consensus 245 --~~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~~~~~~~~~ 291 (342)
T KOG2160|consen 245 --DEDIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLSELSTRKELF 291 (342)
T ss_pred --hhhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHHHHhhcchhh
Confidence 222444566666666677666 7788888877 777777666555454
No 48
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.86 E-value=8.6e-07 Score=87.79 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=187.6
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
..++..|.. +|.-.+..|...|..+...++.+.......-.+..|...|.+. . +...+.-++..|. .+-
T Consensus 104 ~~fl~lL~~----~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~--~----~~~~~~~~v~~L~-~LL 172 (429)
T cd00256 104 EPFFNLLNR----QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI--T----NNDYVQTAARCLQ-MLL 172 (429)
T ss_pred HHHHHHHcC----CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc--C----CcchHHHHHHHHH-HHh
Confidence 345555543 3677888889889888766554322111111223334444321 1 3556767777777 455
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
..++.|..+.+.++++.|+.+|+.. +...+-+++.+++-| +.+++..+.+ ...+.|+.|+++++....+.+.+-++
T Consensus 173 ~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l 250 (429)
T cd00256 173 RVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL-TFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVL 250 (429)
T ss_pred CCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH-hccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHH
Confidence 5788998888888999999999864 468889999999999 6777777777 56799999999999876788999999
Q ss_pred HHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhc-c--ccchHHHHHH-------HHHHhcCChhhHHH-------
Q 038250 283 VVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVD-A--QRSLCEKALS-------VLDGLCSSDYGRGD------- 342 (444)
Q Consensus 283 ~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~-~--~~~~~~~a~~-------~L~~L~~~~~~~~~------- 342 (444)
.+|+||.....+. ......+++.|..+ +++.|.. . |+++.+..-. .+..++..++...+
T Consensus 251 ~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~ 329 (429)
T cd00256 251 AIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLH 329 (429)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence 9999998753200 12445667776655 4555542 2 5555443322 22334443433332
Q ss_pred -----------------Hh-cCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHH
Q 038250 343 -----------------AY-NNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLL 403 (444)
Q Consensus 343 -----------------i~-~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll 403 (444)
+- -+-..+..|+++|.++ ++.....|+.=++.++++.|.| +..+-+-|+=..++++|
T Consensus 330 WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g----r~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 330 WSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG----KDVVEQLGGKQRVMRLL 405 (429)
T ss_pred CCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH----HHHHHHcCcHHHHHHHh
Confidence 21 1112678899988543 5667788899999999987752 33333688888999999
Q ss_pred hcCCChHHHHHHHHHHHHH
Q 038250 404 QVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 404 ~~~~~~~~k~~a~~ll~~l 422 (444)
... ++++|..|...++.+
T Consensus 406 ~h~-d~~Vr~eAL~avQkl 423 (429)
T cd00256 406 NHE-DPNVRYEALLAVQKL 423 (429)
T ss_pred cCC-CHHHHHHHHHHHHHH
Confidence 988 999999999877766
No 49
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.6e-07 Score=93.30 Aligned_cols=260 Identities=12% Similarity=0.107 Sum_probs=194.0
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCc-ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESD-RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
+..|+..|... +|+..+.+|+.+|.++..-.. +.-.-+--.-+||.|+.+|+. + .+.+++..|+++|..+
T Consensus 169 ~kkLL~gL~~~---~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~--E----~n~DIMl~AcRaltyl 239 (1051)
T KOG0168|consen 169 AKKLLQGLQAE---SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH--E----HNFDIMLLACRALTYL 239 (1051)
T ss_pred HHHHHHhcccc---CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc--c----ccHHHHHHHHHHHHHH
Confidence 44555555554 378888999999888665432 222233344689999999952 2 2699999999999977
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a 281 (444)
+..-++....+++.++||.|+.-|.. .-.++-|++..+|..|+ . ...+..+ . .|+|-..+..|.-- +..+++.|
T Consensus 240 ~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS-R-~H~~AiL-~-AG~l~a~LsylDFF-Si~aQR~A 314 (1051)
T KOG0168|consen 240 CEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS-R-RHPKAIL-Q-AGALSAVLSYLDFF-SIHAQRVA 314 (1051)
T ss_pred HhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH-h-hccHHHH-h-cccHHHHHHHHHHH-HHHHHHHH
Confidence 77788888899999999999997754 46888999999999994 3 3456666 4 69999999888755 56799999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC---Ch-hhHHHHhcCCCChHHHHHHH
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS---SD-YGRGDAYNNSLIFPVIVKKI 357 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~---~~-~~~~~i~~~~g~i~~Lv~ll 357 (444)
+.+..|+|..=. .+.-..+++ ++|.|-.+|+..+....|.++-.+..++. +. +--.++ ...|.|.....++
T Consensus 315 laiaaN~Cksi~--sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql-~s~dLi~~~~qLl 389 (1051)
T KOG0168|consen 315 LAIAANCCKSIR--SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQL-CSHDLITNIQQLL 389 (1051)
T ss_pred HHHHHHHHhcCC--CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHH-hchhHHHHHHHHH
Confidence 999999997643 224555666 69999999999999999999988888875 33 333445 7789999999987
Q ss_pred hhc----ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 358 LRV----SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 358 ~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
.-. +....-.-++.|..+|.. .+...+...+.++...|..+|+..
T Consensus 390 svt~t~Ls~~~~~~vIrmls~msS~----~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 390 SVTPTILSNGTYTGVIRMLSLMSSG----SPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hcCcccccccchhHHHHHHHHHccC----ChHHHHHHHHhhHHHHHHHHHhcc
Confidence 543 223345566777777773 455777777889999999988765
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.85 E-value=5.5e-07 Score=99.21 Aligned_cols=89 Identities=24% Similarity=0.169 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF 203 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l 203 (444)
++.|+..|.+ .|+.+++.|+..|..+.. .++++.|+.+|+ ++ +..++..|+.+|..+.
T Consensus 623 ~~~L~~~L~D----~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~---D~----d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 623 VAELAPYLAD----PDPGVRRTAVAVLTETTP-----------PGFGPALVAALG---DG----AAAVRRAAAEGLRELV 680 (897)
T ss_pred HHHHHHHhcC----CCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHc---CC----CHHHHHHHHHHHHHHH
Confidence 3455555554 488899999999887642 236788888883 22 6778888888776321
Q ss_pred CCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 038250 204 PLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREI 244 (444)
Q Consensus 204 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L 244 (444)
.. ....+.|...|.+.++.+|..|+.+|..+
T Consensus 681 ~~----------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 681 EV----------LPPAPALRDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred hc----------cCchHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 10 01123444555555555555555555444
No 51
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.83 E-value=2.4e-09 Score=96.45 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=61.0
Q ss_pred CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250 31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN 104 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~ 104 (444)
..+...+.|-||..+++-|+.++|||+||..||.+++ .....||+|+.+....-+..+..++.+++.|....
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL--~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHL--GTQPFCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred hcchhHHHhhhhhheeecceecccccchhHHHHHHHh--cCCCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 3445568999999999999999999999999999999 56678999999887766777777888888776544
No 52
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.80 E-value=8.7e-07 Score=97.64 Aligned_cols=226 Identities=13% Similarity=0.058 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.++.|+..|... +..++..|+.+|..+....+ ..+.|...|++ . ++.++..|+.+|. .
T Consensus 653 ~~~~L~~aL~D~----d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~---~----d~~VR~~A~~aL~-~ 710 (897)
T PRK13800 653 FGPALVAALGDG----AAAVRRAAAEGLRELVEVLP----------PAPALRDHLGS---P----DPVVRAAALDVLR-A 710 (897)
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHHHHHHHhccC----------chHHHHHHhcC---C----CHHHHHHHHHHHH-h
Confidence 345555555443 78889999899887743211 12445555532 1 4566666666655 2
Q ss_pred cCCCh-------------hhhh----hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250 203 FPLAG-------------EGLT----YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL 265 (444)
Q Consensus 203 l~~~~-------------~~~~----~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L 265 (444)
+...+ ..|. .+...+..+.|..+|.+.+.++|..++.+|..+ ... ....++.|
T Consensus 711 ~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~-~~~---------~~~~~~~L 780 (897)
T PRK13800 711 LRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATL-GAG---------GAPAGDAV 780 (897)
T ss_pred hccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHh-ccc---------cchhHHHH
Confidence 21000 0000 000111223344444444555555555555544 110 11236777
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhc
Q 038250 266 FKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYN 345 (444)
Q Consensus 266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 345 (444)
..+++++ ++.++..|+.+|.++..... +++.|+..|.+.+..++..|+.+|..+..
T Consensus 781 ~~ll~D~-d~~VR~aA~~aLg~~g~~~~-------------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------- 836 (897)
T PRK13800 781 RALTGDP-DPLVRAAALAALAELGCPPD-------------DVAAATAALRASAWQVRQGAARALAGAAA---------- 836 (897)
T ss_pred HHHhcCC-CHHHHHHHHHHHHhcCCcch-------------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------
Confidence 7888777 67888888887777743221 23567777887788888888888876532
Q ss_pred CCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250 346 NSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK 420 (444)
Q Consensus 346 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~ 420 (444)
...++.|+.+|...+..++..|+.+|..+... ....+.|..++... +..+|+.|+..|+
T Consensus 837 -~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~--------------~~a~~~L~~al~D~-d~~Vr~~A~~aL~ 895 (897)
T PRK13800 837 -DVAVPALVEALTDPHLDVRKAAVLALTRWPGD--------------PAARDALTTALTDS-DADVRAYARRALA 895 (897)
T ss_pred -cchHHHHHHHhcCCCHHHHHHHHHHHhccCCC--------------HHHHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence 34568888888888888999999998886321 12456777888877 8899999988876
No 53
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.79 E-value=1.9e-06 Score=85.38 Aligned_cols=247 Identities=11% Similarity=0.053 Sum_probs=179.4
Q ss_pred CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc-----CCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 038250 168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS-----ASSMRCMVWFLKSGDLSRRRNAVLVLR 242 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~~~~~A~~~L~ 242 (444)
.++..++++|... + +.++....+..+..++..++..-..+.+ .+...+++.+|..++.-+...|+.+|.
T Consensus 53 ~y~~~~l~ll~~~--~----~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 53 QYVKTFVNLLSQI--D----KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHhcc--C----cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 5778888888532 2 5778888888888777666544444443 456788888999889999999999999
Q ss_pred HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--cc
Q 038250 243 EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QR 320 (444)
Q Consensus 243 ~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~ 320 (444)
.|.+......... ...-.+..|...++++.+...+..++.+|.+|...++ .|..+.+.++++.|+.+|+.. +.
T Consensus 127 ~l~~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~----~R~~f~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 127 KLACFGLAKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE----YRFAFVLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred HHHhcCccccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch----HHHHHHHccCHHHHHHHHhhccccH
Confidence 9965443221111 1111334555666655346788888999999999987 999999999999999999853 45
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccch--HHHHHHHHhhChHH
Q 038250 321 SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNEEREE--KTAFAEALQVGAFQ 397 (444)
Q Consensus 321 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~~~~g~l~ 397 (444)
.++-.++-+++.|+..++....+ .+.+.|+.|+++++.. .+.+...++.+|.||...+.... ......|+..|+++
T Consensus 202 Ql~Y~~ll~lWlLSF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~ 280 (429)
T cd00256 202 QLQYQSIFCIWLLTFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK 280 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence 77889999999999988866666 7789999999999875 67788999999999988542211 23445666777755
Q ss_pred HHHHHHhcC--CChHHHHHHHHHHHHHHhhcc
Q 038250 398 KLLLLLQVG--CADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 398 ~Ll~ll~~~--~~~~~k~~a~~ll~~l~~~~~ 427 (444)
++..|+.. .++.+.+--..+-..+...-.
T Consensus 281 -~l~~L~~rk~~DedL~edl~~L~e~L~~~~k 311 (429)
T cd00256 281 -TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ 311 (429)
T ss_pred -HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 55555554 357788877777777766543
No 54
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.76 E-value=5.4e-09 Score=71.71 Aligned_cols=47 Identities=23% Similarity=0.493 Sum_probs=40.6
Q ss_pred CccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 35 NHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
+++.|+||.+...+++.++|||. ||..|+.+|+ +....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~--~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLL--KRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHH--HTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhc--ccCCCCCcCChhhc
Confidence 45789999999999999999999 9999999999 47789999998774
No 55
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.69 E-value=1.3e-08 Score=92.49 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=40.4
Q ss_pred CCccccccccccCcCc--------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 34 PNHFRCPISLDLMKDP--------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~P--------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
..+..||||++.+.++ +.++|||.||+.||.+|+ +...+||.||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl--~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWK--KEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHH--hcCCCCCCCCCEee
Confidence 4568999999987764 456899999999999999 45679999998775
No 56
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.68 E-value=5.8e-09 Score=69.49 Aligned_cols=40 Identities=35% Similarity=0.810 Sum_probs=33.0
Q ss_pred ccccccccCc---CceecCCcchhcHHHHHHHHHhcCCCCCCCCC
Q 038250 38 RCPISLDLMK---DPVTLSTGITYDRENIEKWIHEDGNITCPVTN 79 (444)
Q Consensus 38 ~Cpic~~~~~---~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~ 79 (444)
.|+||.+.|. .++.++|||.|+..||.+|++ .+.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~--~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLK--RNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHH--HSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHH--hCCcCCccC
Confidence 5999999995 456679999999999999993 356999995
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.61 E-value=1.3e-08 Score=71.09 Aligned_cols=44 Identities=36% Similarity=0.847 Sum_probs=32.4
Q ss_pred ccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCC
Q 038250 36 HFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTN 79 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~ 79 (444)
.++|||++..|.+||.. .|||+|++.+|.+|++..+...||+.+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 48999999999999986 899999999999999545667899943
No 58
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.58 E-value=5.3e-08 Score=64.94 Aligned_cols=43 Identities=37% Similarity=0.858 Sum_probs=37.6
Q ss_pred ccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250 38 RCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRV 81 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~ 81 (444)
.|+||.+.+.+|+.+. |||.||..|+.+|+ ..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~-~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWL-KSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHH-HhCcCCCCCCCCc
Confidence 4999999998888875 99999999999999 4467889999864
No 59
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.55 E-value=5.8e-08 Score=87.98 Aligned_cols=95 Identities=17% Similarity=0.269 Sum_probs=72.0
Q ss_pred cccccccCCCCCCCCCCCC-CCCCCCCcCCCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 3 LSWKRLRGGRGRRAGKKQP-GVESGGEMELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
.||+.++.+....+..... | +-++.+++ +.||+|..++++|+.+ +|||+||..||+..+ -...+.||.|..
T Consensus 246 qsWe~Yq~r~~a~~~~~Dqv~----k~~~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci~~al-~dsDf~CpnC~r 318 (427)
T COG5222 246 QSWEKYQQRTKAVAEIPDQVY----KMQPPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECIGTAL-LDSDFKCPNCSR 318 (427)
T ss_pred HHHHHHHHHHHhhhhCchhhh----ccCCCCcc--ccCcchhhhhhCcccCccccchHHHHHHhhhh-hhccccCCCccc
Confidence 5899988877665543221 2 33445555 8999999999999999 799999999999877 456789999964
Q ss_pred -ccCCCCCCccHHHHHHHHHHHHhc
Q 038250 81 -VLTSFEPIPNHTIRRMIQDWCVEN 104 (444)
Q Consensus 81 -~~~~~~l~~n~~l~~~i~~~~~~~ 104 (444)
.+-.+.+.|+...+..|+.+...+
T Consensus 319 kdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 319 KDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccchhhccCccHHHHHHHHHHHHHH
Confidence 333456889988888888877654
No 60
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=3.5e-05 Score=82.67 Aligned_cols=286 Identities=13% Similarity=0.098 Sum_probs=168.2
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
+..++..++..+...+..++..|++++...+...+.++..... ...+|.++..+....+.. |.+....++.+|..+
T Consensus 157 ~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~---d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG---DDDAAKSALEALIEL 233 (1075)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc---chHHHHHHHHHHHHH
Confidence 3445555554443334448999999999998877655555554 467888888885442221 343444555555533
Q ss_pred cCCChhh-hhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhH---------------------------
Q 038250 203 FPLAGEG-LTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKV--------------------------- 252 (444)
Q Consensus 203 l~~~~~~-~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~--------------------------- 252 (444)
+...+.. +..+ ...|..-..+.++. +..+|..|...|..++...+.-.
T Consensus 234 ~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 234 LESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HhhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 3333322 1111 12233333333322 34445555544444422211000
Q ss_pred ----------------------HHhhccc---ccHHHHH----HHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 038250 253 ----------------------NVLLDIE---GAIEPLF----KLIKEPICPTATKASLVVVYRTITSASATEKPIQKFV 303 (444)
Q Consensus 253 ----------------------~~i~~~~---g~i~~Lv----~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~ 303 (444)
..++..- -++|+++ .++.+. +...+++++.+|..++.+.. +...-
T Consensus 312 ~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~-----~~m~~ 385 (1075)
T KOG2171|consen 312 SNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCS-----DVMIG 385 (1075)
T ss_pred ccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH-----HHHHH
Confidence 0110011 1333433 334455 67888888888888887753 22222
Q ss_pred h-cCcHHHHHHHhhccccchHHHHHHHHHHhcCC--hhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHcccc
Q 038250 304 D-MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS--DYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNE 379 (444)
Q Consensus 304 ~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~ 379 (444)
. ..+++.++..|.++++.++-.|+.+++.++.+ ++.++. .++-.++.|+..+.+. +++++.+|+.+|.+++...
T Consensus 386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~--~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK--HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH--HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence 2 34777788888899999999999999999973 333333 3346677888888764 7899999999999988743
Q ss_pred ccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 380 EREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 380 ~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
......=.=.+.+.+++.+|....++.+++.++..+.-++...
T Consensus 464 ----~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 464 ----DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 2333332335666644444444449999999999888877654
No 61
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.51 E-value=1.3e-06 Score=71.03 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=124.5
Q ss_pred cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh
Q 038250 259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY 338 (444)
Q Consensus 259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 338 (444)
.+-+..||.-.....+.+.++....-|.|.+.+.. |-..+.+..+++..++.|...++.+++.+++.|.|||-+..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~----Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~ 90 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPI----NYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT 90 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcc----hHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH
Confidence 35677788888777688999999999999999887 89999999999999999999999999999999999999888
Q ss_pred hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHH
Q 038250 339 GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSEL 418 (444)
Q Consensus 339 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~l 418 (444)
+.+.| .+++++|.++..+.+......-.|+.+|..|+.. +...+.+.....++..+.+.-.+. +...+.-|...
T Consensus 91 n~~~I-~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~----~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~f 164 (173)
T KOG4646|consen 91 NAKFI-REALGLPLIIFVLSSPPEITVHSAALFLQLLEFG----ERTERDELLSPAVVRTVQRWRESK-SHDERNLASAF 164 (173)
T ss_pred HHHHH-HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc----ccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 88888 9999999999988777777788999999999984 344556666666776666655444 55555555555
Q ss_pred HHHH
Q 038250 419 LKLL 422 (444)
Q Consensus 419 l~~l 422 (444)
+..+
T Consensus 165 l~~~ 168 (173)
T KOG4646|consen 165 LDKH 168 (173)
T ss_pred HHhh
Confidence 4433
No 62
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.1e-08 Score=93.44 Aligned_cols=71 Identities=23% Similarity=0.462 Sum_probs=60.4
Q ss_pred CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
....+.+.||||.+.|.+|++++|||+||+.|+..++ . +...||.|+. ... .+.+|..+.++++.+.....
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~-~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSW-E-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhc-C-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCC
Confidence 3456779999999999999888999999999999999 3 6789999996 333 77799999999988887654
No 63
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.48 E-value=1.5e-07 Score=60.46 Aligned_cols=39 Identities=51% Similarity=1.048 Sum_probs=35.3
Q ss_pred cccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCC
Q 038250 39 CPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVT 78 (444)
Q Consensus 39 Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c 78 (444)
|+||.+...+++.++|||.||..|+.+|+ ..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~-~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWL-KSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHH-HhCcCCCCCC
Confidence 89999999999999999999999999999 4566789986
No 64
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=5.4e-07 Score=84.28 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=45.8
Q ss_pred cccccccccc-CcCce---ec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC----CCccHHHHHHH
Q 038250 36 HFRCPISLDL-MKDPV---TL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFE----PIPNHTIRRMI 97 (444)
Q Consensus 36 ~~~Cpic~~~-~~~Pv---~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~----l~~n~~l~~~i 97 (444)
+..||+|... +..|- .+ +|||+||..|+.++| ..+...||.|+.++.... +.++..+.+.|
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~-~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF-VRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHh-cCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 4689999984 44553 22 699999999999988 567789999999887654 55555554444
No 65
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.45 E-value=1e-05 Score=78.65 Aligned_cols=247 Identities=13% Similarity=0.168 Sum_probs=171.5
Q ss_pred chhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHH
Q 038250 161 KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVL 239 (444)
Q Consensus 161 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~ 239 (444)
.+.|...|++..|+.++.+.. ....++.+|...|..++ ..+|+..++.-| +..++.+-+. ..++.+...+.
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn-----~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~ 244 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPN-----LETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAG 244 (832)
T ss_pred hhHhhccchHHHHHHHHhCCc-----hhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHH
Confidence 456677799999999996431 13567888999887543 357888887655 5555544443 35888899999
Q ss_pred HHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc
Q 038250 240 VLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ 319 (444)
Q Consensus 240 ~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~ 319 (444)
+|.++-.++++.+..+ ...|+|..++-..+.. +|...++++-+|.|++.+.. -+.+..|++..+-+-|.-+-.+.+
T Consensus 245 il~~mFKHSeet~~~L-vaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~--~a~qrrmveKr~~EWLF~LA~skD 320 (832)
T KOG3678|consen 245 ILEHMFKHSEETCQRL-VAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGG--QAVQRRMVEKRAAEWLFPLAFSKD 320 (832)
T ss_pred HHHHHhhhhHHHHHHH-HhhcccchheeecccC-CHHHHHHHHHHhhhhhhhch--hHHHHHHHHhhhhhhhhhhhcchH
Confidence 9999977788888888 5679999998888777 79999999999999998764 346888999888888888877778
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcCCCC---hHHHHH----------------------------HHhhcChhHHHHH
Q 038250 320 RSLCEKALSVLDGLCSSDYGRGDAYNNSLI---FPVIVK----------------------------KILRVSDLATEFA 368 (444)
Q Consensus 320 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~---i~~Lv~----------------------------ll~~~~~~~~~~a 368 (444)
+-++-.|+-+...|+...+--..+ ...|. +++++. +|. +.+....+
T Consensus 321 el~R~~AClAV~vlat~KE~E~~V-rkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLd--S~R~EAq~ 397 (832)
T KOG3678|consen 321 ELLRLHACLAVAVLATNKEVEREV-RKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLD--SNRLEAQC 397 (832)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHH-hhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhh--cchhhhhh
Confidence 888999999999999877655555 44442 233332 222 12222344
Q ss_pred HHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 369 VSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 369 ~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
++++. +|....-.+......+. +-|+|..|-++..+. ++...+-|...|+.+.+
T Consensus 398 i~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 398 IGAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE 452 (832)
T ss_pred hHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence 44433 33211001122223333 689999999988855 66666667778888865
No 66
>PHA02926 zinc finger-like protein; Provisional
Probab=98.45 E-value=1.6e-07 Score=82.37 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=39.9
Q ss_pred CCCccccccccccCcC---------ceecCCcchhcHHHHHHHHHhc----CCCCCCCCCcccC
Q 038250 33 TPNHFRCPISLDLMKD---------PVTLSTGITYDRENIEKWIHED----GNITCPVTNRVLT 83 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~---------Pv~~~cg~~~c~~ci~~~~~~~----~~~~CP~c~~~~~ 83 (444)
..++..|+||++...+ ++..+|+|+||..||.+|...+ ....||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4556899999998644 3566999999999999999432 1356999998775
No 67
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.42 E-value=1.4e-07 Score=87.63 Aligned_cols=68 Identities=16% Similarity=0.313 Sum_probs=55.4
Q ss_pred CCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC----CCCccHHHHHHHHHH
Q 038250 31 LTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSF----EPIPNHTIRRMIQDW 100 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~----~l~~n~~l~~~i~~~ 100 (444)
.++-...+|++|..+|.|+.++ .|=||||+.||.+++ ....+||.|+..+... .+..+..|+.++..+
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l--~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYL--EESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHH--HHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 3455678999999999999987 799999999999999 3378999998777544 477777888777543
No 68
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.42 E-value=2.2e-07 Score=61.68 Aligned_cols=41 Identities=20% Similarity=0.509 Sum_probs=35.2
Q ss_pred ccccccccC---cCceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 38 RCPISLDLM---KDPVTLSTGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 38 ~Cpic~~~~---~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 489999999 467888999999999999977 56678999974
No 69
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.41 E-value=4e-05 Score=79.83 Aligned_cols=254 Identities=15% Similarity=0.179 Sum_probs=152.4
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
+.++..+...+.+.++.+++.|+.++..+.+.+++ .+... .++.+.++|.+ . ++.++..|+.++. .+.
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d---~----~~~V~~~a~~~l~-~i~ 180 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSD---K----DPSVVSAALSLLS-EIK 180 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTH---S----SHHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccC---C----cchhHHHHHHHHH-HHc
Confidence 33333333333334788999999999999877554 23333 68888899842 2 6889999999988 442
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
.+++.-..+ -...++.|..++...++-.+.....+|..++...+..... ...++.+..++++. ++.+.-.++.+
T Consensus 181 ~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~----~~~i~~l~~~l~s~-~~~V~~e~~~~ 254 (526)
T PF01602_consen 181 CNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK----NRIIEPLLNLLQSS-SPSVVYEAIRL 254 (526)
T ss_dssp CTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH----HHHHHHHHHHhhcc-ccHHHHHHHHH
Confidence 222211100 1233444444455667778888888888775444333311 24567777777765 57777777777
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh-hcChh
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL-RVSDL 363 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~ 363 (444)
+..+.... . .-..++++|+.+|.+.++.++-.++..|..++... ...+ . .....+..+. +.+..
T Consensus 255 i~~l~~~~------~---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~---~~~~~~~~l~~~~d~~ 319 (526)
T PF01602_consen 255 IIKLSPSP------E---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F---NQSLILFFLLYDDDPS 319 (526)
T ss_dssp HHHHSSSH------H---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G---THHHHHHHHHCSSSHH
T ss_pred HHHhhcch------H---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h---hhhhhhheecCCCChh
Confidence 77665432 1 33457788888888777778888888888887643 2222 2 2223334444 45667
Q ss_pred HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 364 ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
++..++.+|..++. +++... ++..|...+...+++..++.+...+..+
T Consensus 320 Ir~~~l~lL~~l~~------~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~l 367 (526)
T PF01602_consen 320 IRKKALDLLYKLAN------ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDL 367 (526)
T ss_dssp HHHHHHHHHHHH--------HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc------ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 77888888888876 333333 5666666663332555666666544433
No 70
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.41 E-value=9.4e-05 Score=77.07 Aligned_cols=280 Identities=13% Similarity=0.099 Sum_probs=194.4
Q ss_pred CccHHHHHHHHHHHHhcccCCCcCCCCCCCCCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc
Q 038250 88 IPNHTIRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN 167 (444)
Q Consensus 88 ~~n~~l~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~ 167 (444)
..+..++++.--+...-... +++.+.-.+..+...+.+.++..+..|+..|..+.. ++ +++.
T Consensus 53 s~~~~~Krl~yl~l~~~~~~------------~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~----~~~~ 114 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHE------------DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PE----MAEP 114 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTT------------SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HH----HHHH
T ss_pred CCCHHHHHHHHHHHHHHhhc------------chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cc----hhhH
Confidence 56788888877766654311 233344455666665655688889999999999872 22 2221
Q ss_pred CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250 168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS 247 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~ 247 (444)
.++.+.++|.+ + ++.++..|+.++..+...+++ .+... .++.+..+|.+.++.++..|+.++..+ ..
T Consensus 115 -l~~~v~~ll~~---~----~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 115 -LIPDVIKLLSD---P----SPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp -HHHHHHHHHHS---S----SHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC
T ss_pred -HHHHHHHHhcC---C----chHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-cc
Confidence 46777778842 2 688999999888855544443 22223 699999999999999999999999999 44
Q ss_pred chhh-HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHH
Q 038250 248 DHRK-VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKA 326 (444)
Q Consensus 248 ~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a 326 (444)
+++. ...+ ...+..|.+++... ++-.+...+..|..++.... ... -....++.+..+|.+.+..++-.+
T Consensus 182 ~~~~~~~~~---~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~---~~~---~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 182 NDDSYKSLI---PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEP---EDA---DKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp THHHHTTHH---HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSH---HHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhH---HHHHHHhhhccccc-chHHHHHHHHHHHhcccCCh---hhh---hHHHHHHHHHHHhhccccHHHHHH
Confidence 4433 2223 46677777777666 78888888898888876653 111 115688899999998899999999
Q ss_pred HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
+.++..+....... ..+++.|++++.+.+..++..++..|..++... ...+. .....+..+..+
T Consensus 252 ~~~i~~l~~~~~~~------~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--------~~~v~--~~~~~~~~l~~~ 315 (526)
T PF01602_consen 252 IRLIIKLSPSPELL------QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--------PPAVF--NQSLILFFLLYD 315 (526)
T ss_dssp HHHHHHHSSSHHHH------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--------HHHHG--THHHHHHHHHCS
T ss_pred HHHHHHhhcchHHH------HhhHHHHHHHhhcccchhehhHHHHHHHhhccc--------chhhh--hhhhhhheecCC
Confidence 99999998866622 245789999998778889999999999999852 22223 223334455544
Q ss_pred CChHHHHHHHHHHHHHHh
Q 038250 407 CADKTKEHVSELLKLLNP 424 (444)
Q Consensus 407 ~~~~~k~~a~~ll~~l~~ 424 (444)
.+..+|..+..+|..+..
T Consensus 316 ~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp SSHHHHHHHHHHHHHH--
T ss_pred CChhHHHHHHHHHhhccc
Confidence 488899999887766653
No 71
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7.6e-05 Score=78.91 Aligned_cols=252 Identities=14% Similarity=0.133 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHHHhccCcccchhHhh----cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc
Q 038250 140 QAGCRDLVAKIKKWTKESDRNKRCIVD----NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS 215 (444)
Q Consensus 140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~----~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~ 215 (444)
++...-++.+|+++.+.+|+-...+.. .|-.+.+..+|+..+ ++.++..|+.++. .+..+.+....+++
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~------~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~ 1811 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRK------HPKLQILALQVIL-LATANKECVTDLAT 1811 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcC------CchHHHHHHHHHH-HHhcccHHHHHHHh
Confidence 346778999999999988865444432 378888999997542 5779999999998 77888888889999
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA--- 292 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~--- 292 (444)
.|.+..|+.+|.+. +..++.+..+|..|++...-.++.+ . .|++.-+..++-...++..+..++..|..|..+.
T Consensus 1812 ~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~-~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~G 1888 (2235)
T KOG1789|consen 1812 CNVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEAL-E-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTG 1888 (2235)
T ss_pred hhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHH-h-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccC
Confidence 99999999999765 7889999999999966555566666 4 6887777766654434555555555555553221
Q ss_pred ----------------------------------CC------------------------------C-------------
Q 038250 293 ----------------------------------SA------------------------------T------------- 295 (444)
Q Consensus 293 ----------------------------------~~------------------------------~------------- 295 (444)
+| +
T Consensus 1889 PrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg 1968 (2235)
T KOG1789|consen 1889 PRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG 1968 (2235)
T ss_pred CceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc
Confidence 00 0
Q ss_pred --------------------------------------------------------------------CchhHHHHhcCc
Q 038250 296 --------------------------------------------------------------------EKPIQKFVDMGL 307 (444)
Q Consensus 296 --------------------------------------------------------------------~~~~~~i~~~g~ 307 (444)
+.....+-..|-
T Consensus 1969 ~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGy 2048 (2235)
T KOG1789|consen 1969 TSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGY 2048 (2235)
T ss_pred hhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccc
Confidence 001111122355
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHH
Q 038250 308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAF 387 (444)
Q Consensus 308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 387 (444)
+|.++..+...+..+-..|+.+|..|+.+.-...++ .....+..++..|++. .....-|+.+|-.+... ...+..
T Consensus 2049 lPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AM-A~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r---~~~eLV 2123 (2235)
T KOG1789|consen 2049 LPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAM-AQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKR---NTGELV 2123 (2235)
T ss_pred hHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHH-hccccchhhHHHHHhc-chHHHHHHHHHHHHHHH---hHHHHH
Confidence 555555554444555578899999999876666666 6667777788877653 22334788888888774 346778
Q ss_pred HHHHhhChHHHHHHHHhcC
Q 038250 388 AEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 388 ~~~~~~g~l~~Ll~ll~~~ 406 (444)
.++++.|.|+.|+.+|...
T Consensus 2124 AQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2124 AQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhccCcHHHHHHHhccc
Confidence 8899999999999999864
No 72
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.6e-07 Score=92.01 Aligned_cols=54 Identities=24% Similarity=0.500 Sum_probs=45.6
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHHh---cCCCCCCCCCcccCCCCCCc
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE---DGNITCPVTNRVLTSFEPIP 89 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~---~~~~~CP~c~~~~~~~~l~~ 89 (444)
+..||||++...-|+.+.|||.||..||.+||.. .+.+.||.|+..+..+++.|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 7899999999999999999999999999999932 23578999998887755433
No 73
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.35 E-value=1.9e-05 Score=79.80 Aligned_cols=214 Identities=14% Similarity=0.060 Sum_probs=142.4
Q ss_pred cccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh-----hhhhhcccCCcHHHHHHHHhcCCHH
Q 038250 158 DRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG-----EGLTYLGSASSMRCMVWFLKSGDLS 232 (444)
Q Consensus 158 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~ 232 (444)
..+.....+...++.++++|....+- ...+++.+.-++.-.. +..... .++..+-+.-....+..+....+..
T Consensus 315 sklq~~~~e~~~~~~~~ellf~~~sl-~a~~~~~~~i~l~e~~-i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~ 392 (678)
T KOG1293|consen 315 SKLQLPQHEEATLKTTTELLFICASL-AASDEKYRLILLNETL-ILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHD 392 (678)
T ss_pred HhhhhHHhhhhhhhhHHHHHHHHHHH-hhcchhhhHHHhhhhh-hhhhhhhhcchhHHHHHHHHHHHHHHccccccccHH
Confidence 34555666777778888877321000 0012222222222211 111111 2233333333333333333334667
Q ss_pred HHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHH
Q 038250 233 RRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLL 312 (444)
Q Consensus 233 ~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv 312 (444)
....|+..+.+++......+.-+ ....++.+||+++..+ +..+...++++|.|+...-. ..+..+++.|+|+.|.
T Consensus 393 ~~aaa~l~~~s~srsV~aL~tg~-~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs---~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 393 FVAAALLCLKSFSRSVSALRTGL-KRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFS---NLKSKFLRNNGIDILE 467 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-ccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcc---cHHHHHHHcCcHHHHH
Confidence 77777778888854555666666 5678999999999888 67899999999999997754 3799999999999999
Q ss_pred HHhhccccchHHHHHHHHHHhcCChhhHHHHh-cCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 313 EMLVDAQRSLCEKALSVLDGLCSSDYGRGDAY-NNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 313 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
+++.+.+..++..++|+|+++....+...+.. ..--.-..++.+....+..++|.+...|.|+...
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999997665544432 2222344555555667889999999999999885
No 74
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1.6e-05 Score=81.66 Aligned_cols=220 Identities=15% Similarity=0.139 Sum_probs=169.6
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVS 246 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s 246 (444)
.|+.|++-+.+. + -.+-++.|+..|. +.+..+|..++ +.|+++|+..|+.+ ++++...+..++.++.+
T Consensus 23 TI~kLcDRvess---T---L~eDRR~A~rgLK---a~srkYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 23 TIEKLCDRVESS---T---LLEDRRDAVRGLK---AFSRKYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred HHHHHHHHHhhc---c---chhhHHHHHHHHH---HHHHHHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 466666666432 1 2455777777776 33567887776 56699999999876 79999999999999976
Q ss_pred cch------h----------hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH-hcCcHH
Q 038250 247 SDH------R----------KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFV-DMGLVS 309 (444)
Q Consensus 247 ~~~------~----------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~-~~g~v~ 309 (444)
.++ + ..+.+....+.|..|+..++.. +..++..+...|.+|-.+.. .+.+..+. -.-+|.
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~--~e~q~~ll~~P~gIS 169 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRP--TELQDALLVSPMGIS 169 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCC--HHHHHHHHHCchhHH
Confidence 653 1 2233436678899999999988 78999999999999987765 34566654 478999
Q ss_pred HHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh-c---ChhHHHHHHHHHHHHccccccchHH
Q 038250 310 LLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR-V---SDLATEFAVSILWKLCKNEEREEKT 385 (444)
Q Consensus 310 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~-~---~~~~~~~a~~~L~~L~~~~~~~~~~ 385 (444)
.|+.+|.+..+.++..++-.|..|+.+.....+++.=..+...|..++.. + ...+.+.|+..|-+|-+.+.+
T Consensus 170 ~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S---- 245 (970)
T KOG0946|consen 170 KLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS---- 245 (970)
T ss_pred HHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc----
Confidence 99999999999999999999999998777766665667889999998875 2 336789999999999996544
Q ss_pred HHHHHHhhChHHHHHHHHhc
Q 038250 386 AFAEALQVGAFQKLLLLLQV 405 (444)
Q Consensus 386 ~~~~~~~~g~l~~Ll~ll~~ 405 (444)
+..-..+.+.||.|..+|..
T Consensus 246 NQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 246 NQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred hhhHHhccccHHHHHhhcCc
Confidence 44445578999999977654
No 75
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.33 E-value=4.1e-06 Score=68.14 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=109.7
Q ss_pred CCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250 216 ASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 216 ~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 294 (444)
-+.+..||.-... .+.+.+++...-|.|+ +-++-|-..+ ....++...|..|... +...++.+.+.|.|+|-+..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANF-AYDP~Nys~L-rql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~- 90 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANF-AYDPINYSHL-RQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKT- 90 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-ccCcchHHHH-HHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChH-
Confidence 4557777775554 4899999999999999 6788888888 6789999999999998 88999999999999999987
Q ss_pred CCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh-hHHHHhcCCCChHHHHHHHhh
Q 038250 295 TEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY-GRGDAYNNSLIFPVIVKKILR 359 (444)
Q Consensus 295 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~ll~~ 359 (444)
|++.|++++++|.++..++++.+.++..|+.+|..|+-..- .+..+ .-|.+|..+.+
T Consensus 91 ---n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el-----l~p~Vv~~v~r 148 (173)
T KOG4646|consen 91 ---NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL-----LSPAVVRTVQR 148 (173)
T ss_pred ---HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh-----ccHHHHHHHHH
Confidence 99999999999999999999999999999999999986433 23333 34566666654
No 76
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.2e-07 Score=88.42 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=58.9
Q ss_pred CCCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC-CCCCCccHHHHHHHHHHH
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT-SFEPIPNHTIRRMIQDWC 101 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~-~~~l~~n~~l~~~i~~~~ 101 (444)
...+..++.||||+.+++.-+++ .|+|.||..||..-+ ..++..||.|++.+. .+.+.++...-.+|...-
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~-r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKAL-RSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHH-HhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 44456679999999999999988 699999999999988 678899999998875 457888877777775543
No 77
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=5.9e-07 Score=80.85 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=43.2
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHH-HHHhcCCCCCCCCCcccCCC
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEK-WIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~-~~~~~~~~~CP~c~~~~~~~ 85 (444)
..++.|+||.+.+.+|..++|||.||..||.. |- .+..-.||.||+.....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t-~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWT-KKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHH-hhccccCchhhhhccch
Confidence 46799999999999999999999999999999 65 34445699999866543
No 78
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.26 E-value=1.1e-06 Score=57.38 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=37.7
Q ss_pred ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250 206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~ 245 (444)
+++++..+++.|++|.|+.+|++++.++++.|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999995
No 79
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.7e-07 Score=93.91 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=49.1
Q ss_pred CCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250 33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP 89 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~ 89 (444)
+.+-++||+|..-.+|-|++.|||.||..|++..+ ......||.|+..|...++.+
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~-etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRY-ETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHH-HHhcCCCCCCCCCCCcccccc
Confidence 45558999999999999999999999999999988 666788999999998877643
No 80
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.24 E-value=0.00042 Score=67.03 Aligned_cols=227 Identities=13% Similarity=0.129 Sum_probs=164.2
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL 265 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L 265 (444)
+.+...-|+++|. .+-..++.|..++.++++..++..|.++ +-.++-+...+++-| +.++...+.+ ...+.|+.|
T Consensus 170 ~~~~~~~~~rcLQ-~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlL-tFn~~~ae~~-~~~~li~~L 246 (442)
T KOG2759|consen 170 NNDYIQFAARCLQ-TLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLL-TFNPHAAEKL-KRFDLIQDL 246 (442)
T ss_pred CCchHHHHHHHHH-HHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHh-hcCHHHHHHH-hhccHHHHH
Confidence 3556667777887 5556789999999999999999999543 678888999999999 6788888888 667999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhc---cccchHHHH-------HHHHHH
Q 038250 266 FKLIKEPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVD---AQRSLCEKA-------LSVLDG 332 (444)
Q Consensus 266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~---~~~~~~~~a-------~~~L~~ 332 (444)
++++++...+.+.+..+.+++|+....+.. ......++..++.+. ++.|.. .|+++.+.. -.-...
T Consensus 247 ~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~ 325 (442)
T KOG2759|consen 247 SDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQD 325 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999998867889999999999998776200 013455566555544 455542 244444332 233334
Q ss_pred hcCChhhHHHHh-------------------------cCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccchHHH
Q 038250 333 LCSSDYGRGDAY-------------------------NNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNEEREEKTA 386 (444)
Q Consensus 333 L~~~~~~~~~i~-------------------------~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~ 386 (444)
|++.++...++. .+-..+..|+++|..+ ++..-..|+.=+....++.|. .
T Consensus 326 LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~----g 401 (442)
T KOG2759|consen 326 LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE----G 401 (442)
T ss_pred hccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch----H
Confidence 455444333331 1112788999999876 467778899889999998765 4
Q ss_pred HHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 387 FAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 387 ~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
+..+.+-|+=+.++++|... ++++|-.|.-+++.+-
T Consensus 402 k~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 402 KAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLM 437 (442)
T ss_pred hHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 55555789999999999999 9999999988666553
No 81
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.21 E-value=1.5e-06 Score=56.73 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=37.5
Q ss_pred CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
++++..+++.|+||+|+++|.+++..+++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4589999999999999999999999999999999999974
No 82
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.19 E-value=9.5e-05 Score=74.96 Aligned_cols=254 Identities=11% Similarity=0.075 Sum_probs=158.3
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS 218 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~ 218 (444)
|......|+..+..++..-..-|.-+-..+++.+||++| .++ +..++..++++|.+++-.....|..+.+.|+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll---~dp----~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL---MDP----EIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh---hCc----chhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 666777778888877765555555666778999999999 344 5789999999999555556677889999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
|..+.+++.+.+..++..+.|+|+++.-.+++-...--...=.-..++.+.+++ ++.+++.+...|+||.-+.. +.
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~---~s 538 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSR---KS 538 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcH---HH
Confidence 999999999999999999999999996554432222112212334566667777 89999999999999987743 24
Q ss_pred hHHHHhc--CcHHHHHHHhh-ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh--------cChhHHHH
Q 038250 299 IQKFVDM--GLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR--------VSDLATEF 367 (444)
Q Consensus 299 ~~~i~~~--g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~--------~~~~~~~~ 367 (444)
...+++. ..+....-.++ .+...+.......+.++....+.+..- .-.|..+.++..-.. ......-+
T Consensus 539 vdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~-am~~~fk~lvl~~e~~~n~~q~s~~~qls~~ 617 (678)
T KOG1293|consen 539 VDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKK-AMEGIFKILVLLAEVNENKKQLSIEQQLSLN 617 (678)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHH-HHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 5555542 23333333333 222233333333344444333333322 223545544432111 11223346
Q ss_pred HHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcC
Q 038250 368 AVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVG 406 (444)
Q Consensus 368 a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~ 406 (444)
+.+.+.++.....+ .+..+.+. ..|+....+....++
T Consensus 618 ~~~~iinl~~~~s~--s~~dr~~~~~n~i~e~~~k~~~sd 655 (678)
T KOG1293|consen 618 IMSEIINLTTTDSS--SNFDRSNLKLNCIWELNNKLWNSD 655 (678)
T ss_pred HHHHHHhccCCCCC--cccchhhccccceechhhhcccch
Confidence 66666666554322 23334444 566666666666665
No 83
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00044 Score=64.32 Aligned_cols=273 Identities=9% Similarity=0.044 Sum_probs=175.7
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHh-hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIV-DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
..+++..|.+. ++.++..|+..+-.+... ..+...- +.-.++.|.+++.. . ++ .+.|+.+|. |
T Consensus 5 l~elv~ll~~~----sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~---~----~~--~~~a~~alV-n 68 (353)
T KOG2973|consen 5 LVELVELLHSL----SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD---L----DP--AEPAATALV-N 68 (353)
T ss_pred HHHHHHHhccC----ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC---c----cc--ccHHHHHHH-H
Confidence 44677777776 788888898888888765 2222222 22467778888832 2 22 567888899 8
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc-----cccHHHHHHHhcCCCC-hH
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI-----EGAIEPLFKLIKEPIC-PT 276 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~-----~g~i~~Lv~ll~~~~~-~~ 276 (444)
++.++.-++.+... .+..+++.+.......-...|.+|.||+..++.....+... .|.+...+.....+.+ ..
T Consensus 69 lsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a 147 (353)
T KOG2973|consen 69 LSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYA 147 (353)
T ss_pred HHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccccccc
Confidence 99888888877766 88888888877766677788999999955444444433222 2444444444444422 23
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHH-hhccccch-HHHHHHHHHHhcCChhhHHHHhcCCCChHHHH
Q 038250 277 ATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEM-LVDAQRSL-CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIV 354 (444)
Q Consensus 277 ~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~l-L~~~~~~~-~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 354 (444)
-....+-.+.||++... .|..+.+...++.=.-+ +.+.+..+ +...+++|.|.|.....+..+ .+ ..+..|.
T Consensus 148 ~f~ylA~vf~nls~~~~----gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~l-L~-e~~~lLp 221 (353)
T KOG2973|consen 148 EFHYLAPVFANLSQFEA----GRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVL-LD-ESINLLP 221 (353)
T ss_pred chhHHHHHHHHHhhhhh----hhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHH-hc-chHHHHH
Confidence 45667788889999876 78888776633321111 12334444 466789999999877777777 33 3333333
Q ss_pred HHHhh-----------------------------cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc
Q 038250 355 KKILR-----------------------------VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV 405 (444)
Q Consensus 355 ~ll~~-----------------------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~ 405 (444)
.+|.- .++.++..-+.+|..||.- ...+..+..-|+-+.+-++-..
T Consensus 222 ~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-----~~GRe~lR~kgvYpilRElhk~ 296 (353)
T KOG2973|consen 222 AILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-----RAGREVLRSKGVYPILRELHKW 296 (353)
T ss_pred HHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-----hHhHHHHHhcCchHHHHHHhcC
Confidence 33320 2345678888999999982 3334444455555555445555
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 038250 406 GCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 406 ~~~~~~k~~a~~ll~~l~~ 424 (444)
..++..++.+-.+.+++.+
T Consensus 297 e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 297 EEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCcHHHHHHHHHHHHHHHh
Confidence 5578999999999999986
No 84
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0028 Score=61.72 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh------h----hhhh
Q 038250 143 CRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG------E----GLTY 212 (444)
Q Consensus 143 ~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~------~----~~~~ 212 (444)
....++.+.-++.. |.--..+++.++|+.|+.+|. +. +.++....+..|. -+...+ + --..
T Consensus 101 Lhd~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLg---He----NtDI~iavvdLLq-ELTD~Dv~~es~egAevLida 171 (536)
T KOG2734|consen 101 LHDIIQEMHVLATM-PDLYPILVELNAVQSLLELLG---HE----NTDIAIAVVDLLQ-ELTDEDVLYESEEGAEVLIDA 171 (536)
T ss_pred HHHHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhc---CC----CchhHHHHHHHHH-HhhhhcccccccccHHHHHHH
Confidence 34456667667654 555668899999999999994 22 5777777788777 333211 1 2346
Q ss_pred cccCCcHHHHHHHHhcCCHH------HHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-CChHHHHHHHHHH
Q 038250 213 LGSASSMRCMVWFLKSGDLS------RRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-ICPTATKASLVVV 285 (444)
Q Consensus 213 i~~~g~i~~Lv~lL~~~~~~------~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL 285 (444)
+++.++++.||+-+..=+.. ...+....+-|+....++....++ ..|.+..|+.-+... .-..-+..|...|
T Consensus 172 Lvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~-e~~ll~WLL~rl~~k~~f~aNk~YasEiL 250 (536)
T KOG2734|consen 172 LVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIV-EQGLLSWLLKRLKGKAAFDANKQYASEIL 250 (536)
T ss_pred HHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHH-HhhHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 77899999999988653333 345677788899888888888884 458888887744332 2345677888888
Q ss_pred HHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc----c-----ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHH
Q 038250 286 YRTITSASATEKPIQKFVDMGLVSLLLEMLVD----A-----QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKK 356 (444)
Q Consensus 286 ~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~----~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~l 356 (444)
.-+-.+.. +|+.......+|..|++-|.. + +.+.-++-...|..+...++++..+ ..+.|+....-+
T Consensus 251 aillq~s~---e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~F-l~~EGlqLm~Lm 326 (536)
T KOG2734|consen 251 AILLQNSD---ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERF-LKGEGLQLMNLM 326 (536)
T ss_pred HHHhccCc---hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhh-hccccHHHHHHH
Confidence 87776654 588888999999999998861 1 3456788889999999999999999 667777776554
Q ss_pred HhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHh
Q 038250 357 ILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQ 404 (444)
Q Consensus 357 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~ 404 (444)
++. ....+..|+++|-......++ .......++.+++..+..+.-
T Consensus 327 lr~-Kk~sr~SalkvLd~am~g~~g--t~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 327 LRE-KKVSRGSALKVLDHAMFGPEG--TPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHH-HHHhhhhHHHHHHHHHhCCCc--hHHHHHHHHHHhHHHHHHHHh
Confidence 543 555678899999888775442 356666777788877777443
No 85
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.8e-06 Score=76.69 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=47.6
Q ss_pred CCCCCcCCCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 24 ESGGEMELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 24 ~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
++|+........+-.||+|++.-..|.+. +|||.||..||..-+-....++||.|+.+..
T Consensus 227 ~ap~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 227 RAPKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCCCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34445555556678999999999999998 6999999999998662345689999997664
No 86
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.09 E-value=4.2e-05 Score=74.42 Aligned_cols=211 Identities=15% Similarity=0.174 Sum_probs=150.7
Q ss_pred hhcccCCcHHHHHHHHhcCCHHH--HHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250 211 TYLGSASSMRCMVWFLKSGDLSR--RRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT 288 (444)
Q Consensus 211 ~~i~~~g~i~~Lv~lL~~~~~~~--~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 288 (444)
..|...|++..|+.++.+.+.+. +..|+..|..+. ..+|++.++. -| +..++.+.+...-++..+..++.|.++
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 45667899999999999987555 889999999994 4567887743 24 444555545443478999999999999
Q ss_pred hcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC--ChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 289 ITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS--SDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
-.+.+ +.+..++++|+++.++--.+..++.+..+|+-+|.|++- +.+.+..+ ++..+-+-|.-+-.+.++..+-
T Consensus 250 FKHSe---et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrm-veKr~~EWLF~LA~skDel~R~ 325 (832)
T KOG3678|consen 250 FKHSE---ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRM-VEKRAAEWLFPLAFSKDELLRL 325 (832)
T ss_pred hhhhH---HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHH-HHhhhhhhhhhhhcchHHHHHH
Confidence 99875 689999999999999988888889999999999999885 45677788 6767777777766666777888
Q ss_pred HHHHHHHHHccccccchHHHHHHHHhhCh---HHHHHHHHhcCCC---------hHHHHHHHHHHHHHHhhccCCCCCCc
Q 038250 367 FAVSILWKLCKNEEREEKTAFAEALQVGA---FQKLLLLLQVGCA---------DKTKEHVSELLKLLNPHRARLECIDS 434 (444)
Q Consensus 367 ~a~~~L~~L~~~~~~~~~~~~~~~~~~g~---l~~Ll~ll~~~~~---------~~~k~~a~~ll~~l~~~~~~~~~~~~ 434 (444)
+|+-+...|+.+ .+.-.++.+.|- +++|+..+..+.- .+.++---+++-++...+....||++
T Consensus 326 ~AClAV~vlat~-----KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~A 400 (832)
T KOG3678|consen 326 HACLAVAVLATN-----KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGA 400 (832)
T ss_pred HHHHHHhhhhhh-----hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHH
Confidence 999998888884 445555555554 4455554443310 11222233455555545545556654
No 87
>PF05536 Neurochondrin: Neurochondrin
Probab=98.08 E-value=0.00013 Score=75.50 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=122.4
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh---hHHHhhcccccHHHHHHHhcCCC------ChHHHHHHHHHHHH
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR---KVNVLLDIEGAIEPLFKLIKEPI------CPTATKASLVVVYR 287 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~------~~~~~~~a~~aL~~ 287 (444)
..+...+.+|++.+++-|-.+...+.++...++. .++.|... =+...|-+||+++. ....+.-|+..|..
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3567788899988888888888889999765553 23345343 34789999999742 24567888888999
Q ss_pred HhcCCCCCCchhHHHHhcCcHHHHHHHhhcccc-chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 288 TITSASATEKPIQKFVDMGLVSLLLEMLVDAQR-SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 288 L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
.|..++ -..-..+++ -||.|++++...+. .+...|+.+|..++.+++|+..+ .+.|+|+.|++.+.+ .+...+
T Consensus 84 f~~~~~--~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aL-l~~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 84 FCRDPE--LASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKAL-LESGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred HcCChh--hhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHH-HhcCCHHHHHHHHHh-CcchHH
Confidence 998664 112344554 69999999988776 99999999999999999999999 888999999998876 667789
Q ss_pred HHHHHHHHHccc
Q 038250 367 FAVSILWKLCKN 378 (444)
Q Consensus 367 ~a~~~L~~L~~~ 378 (444)
.|..+|.+++..
T Consensus 158 ~Al~lL~~Lls~ 169 (543)
T PF05536_consen 158 IALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
No 88
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.08 E-value=0.00088 Score=66.86 Aligned_cols=222 Identities=12% Similarity=-0.006 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.++.++..|... .+.++...++..+. ..+++. ++..|+..|.+ . +..++..+..+|.
T Consensus 55 a~~~L~~aL~~d---~~~ev~~~aa~al~--~~~~~~---------~~~~L~~~L~d---~----~~~vr~aaa~ALg-- 111 (410)
T TIGR02270 55 ATELLVSALAEA---DEPGRVACAALALL--AQEDAL---------DLRSVLAVLQA---G----PEGLCAGIQAALG-- 111 (410)
T ss_pred HHHHHHHHHhhC---CChhHHHHHHHHHh--ccCChH---------HHHHHHHHhcC---C----CHHHHHHHHHHHh--
Confidence 455666766543 24445444444432 222221 36777777742 2 4557777777776
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
.+...+..+.|+.+|++.++.++..++.++... . ....+.|..+|++. ++.++..|+
T Consensus 112 ---------~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r------------~-~~~~~~L~~~L~d~-d~~Vra~A~ 168 (410)
T TIGR02270 112 ---------WLGGRQAEPWLEPLLAASEPPGRAIGLAALGAH------------R-HDPGPALEAALTHE-DALVRAAAL 168 (410)
T ss_pred ---------cCCchHHHHHHHHHhcCCChHHHHHHHHHHHhh------------c-cChHHHHHHHhcCC-CHHHHHHHH
Confidence 234456677777777777777776666555441 1 12345666777666 677777777
Q ss_pred HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHH---hcCC------------
Q 038250 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDA---YNNS------------ 347 (444)
Q Consensus 283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~~------------ 347 (444)
.+|..+-... +++.|...+.+.++.++..|+..|..+-. ++.-..+ ..+.
T Consensus 169 raLG~l~~~~--------------a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~l 233 (410)
T TIGR02270 169 RALGELPRRL--------------SESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLL 233 (410)
T ss_pred HHHHhhcccc--------------chHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHH
Confidence 7777665432 45556666777777777777777766533 2211111 0111
Q ss_pred ------CChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038250 348 ------LIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 421 (444)
Q Consensus 348 ------g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~ 421 (444)
.+++.|..++.. +.++..++.+|..+-. ..+++.|+..+... ..++.|...++.
T Consensus 234 al~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~---------------p~av~~L~~~l~d~---~~aR~A~eA~~~ 293 (410)
T TIGR02270 234 AVAGGPDAQAWLRELLQA--AATRREALRAVGLVGD---------------VEAAPWCLEAMREP---PWARLAGEAFSL 293 (410)
T ss_pred HhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCC---------------cchHHHHHHHhcCc---HHHHHHHHHHHH
Confidence 223333333322 2244555555544443 57888999988755 488899888888
Q ss_pred HHhh
Q 038250 422 LNPH 425 (444)
Q Consensus 422 l~~~ 425 (444)
+...
T Consensus 294 ItG~ 297 (410)
T TIGR02270 294 ITGM 297 (410)
T ss_pred hhCC
Confidence 8763
No 89
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.07 E-value=0.00029 Score=69.39 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=172.9
Q ss_pred HHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh
Q 038250 148 AKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK 227 (444)
Q Consensus 148 ~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~ 227 (444)
..|..+-++.+.-+..+.-.-..+.+..++- + ++.+++..+.++++ .+-.+++.-..+.+.+.--.++.-|.
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL--~-----~~~~vraa~yRilR-y~i~d~~~l~~~~~l~id~~ii~SL~ 76 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLL--S-----DSKEVRAAGYRILR-YLISDEESLQILLKLHIDIFIIRSLD 76 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHC--C-----CcHHHHHHHHHHHH-HHHcCHHHHHHHHHcCCchhhHhhhc
Confidence 4455566666666666665555666665441 1 14889999999999 55566677777777776666666666
Q ss_pred cC--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc
Q 038250 228 SG--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDM 305 (444)
Q Consensus 228 ~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~ 305 (444)
.+ +..-|++|.+.++.+.... +....+ ..|++..+|.+.++. +...+..|+.+|..|+..+ ...++.+
T Consensus 77 ~~~~~~~ER~QALkliR~~l~~~-~~~~~~--~~~vvralvaiae~~-~D~lr~~cletL~El~l~~------P~lv~~~ 146 (371)
T PF14664_consen 77 RDNKNDVEREQALKLIRAFLEIK-KGPKEI--PRGVVRALVAIAEHE-DDRLRRICLETLCELALLN------PELVAEC 146 (371)
T ss_pred ccCCChHHHHHHHHHHHHHHHhc-CCcccC--CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC------HHHHHHc
Confidence 54 5778899999999996442 334445 359999999999997 6789999999999999874 6778899
Q ss_pred CcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-------Ch--hHHHHHHHHHHHHc
Q 038250 306 GLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-------SD--LATEFAVSILWKLC 376 (444)
Q Consensus 306 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-------~~--~~~~~a~~~L~~L~ 376 (444)
||+..|++.+.++..++.+..+.++..+-.++..|.-+ ...--++.++.-+... +. ..-+.+..++..+-
T Consensus 147 gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl-~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~L 225 (371)
T PF14664_consen 147 GGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL-RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLL 225 (371)
T ss_pred CCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh-cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999876668999999999999999888877 3333455555544332 11 12244445554444
Q ss_pred cccccchHHHHHHHH--hhChHHHHHHHHhcCCChHHHHHHHHHH
Q 038250 377 KNEEREEKTAFAEAL--QVGAFQKLLLLLQVGCADKTKEHVSELL 419 (444)
Q Consensus 377 ~~~~~~~~~~~~~~~--~~g~l~~Ll~ll~~~~~~~~k~~a~~ll 419 (444)
+ +|+| ..... +..++..|+..|+.. .+++|+....++
T Consensus 226 r-sW~G----Ll~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll 264 (371)
T PF14664_consen 226 R-SWPG----LLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLL 264 (371)
T ss_pred h-cCCc----eeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3 2322 22222 225788899999888 778888877643
No 90
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.06 E-value=4.1e-06 Score=62.13 Aligned_cols=40 Identities=28% Similarity=0.670 Sum_probs=31.8
Q ss_pred ccccccccCcCc------------ee-cCCcchhcHHHHHHHHHhcCCCCCCCCC
Q 038250 38 RCPISLDLMKDP------------VT-LSTGITYDRENIEKWIHEDGNITCPVTN 79 (444)
Q Consensus 38 ~Cpic~~~~~~P------------v~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~ 79 (444)
.|+||++.|.+| +. ..|||.|...||.+|+ +...+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl--~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWL--KQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHH--TTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHH--hcCCcCCCCC
Confidence 499999999433 33 3899999999999999 5555999996
No 91
>PTZ00429 beta-adaptin; Provisional
Probab=98.00 E-value=0.0011 Score=70.77 Aligned_cols=247 Identities=12% Similarity=0.096 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.+.++-..|.+. +...+..|++.+-.....+.+. ..+.+-+++++.+ . |.+++.-.--.|..
T Consensus 32 ge~~ELr~~L~s~----~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S---~----d~elKKLvYLYL~~ 94 (746)
T PTZ00429 32 GEGAELQNDLNGT----DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS---T----DLELKKLVYLYVLS 94 (746)
T ss_pred chHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC---C----CHHHHHHHHHHHHH
Confidence 4566677777654 6677788887666554433211 1244555565532 1 45555555444442
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a 281 (444)
....+++. .. -++..|.+-+.+.++.+|-.|.++|.++ ..++..+. .++++.+.+.+. ++.+++.|
T Consensus 95 ya~~~pel-al----LaINtl~KDl~d~Np~IRaLALRtLs~I--r~~~i~e~------l~~~lkk~L~D~-~pYVRKtA 160 (746)
T PTZ00429 95 TARLQPEK-AL----LAVNTFLQDTTNSSPVVRALAVRTMMCI--RVSSVLEY------TLEPLRRAVADP-DPYVRKTA 160 (746)
T ss_pred HcccChHH-HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcHHHHHH------HHHHHHHHhcCC-CHHHHHHH
Confidence 22222221 12 2377788888888999999999999988 23444443 367788888887 89999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS 361 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~ 361 (444)
+-++..+-... ...+.+.|.++.|.++|.+.++.++-+|+.+|..+.......-.+ ..+.+..|+..+...+
T Consensus 161 alai~Kly~~~------pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~ 232 (746)
T PTZ00429 161 AMGLGKLFHDD------MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECN 232 (746)
T ss_pred HHHHHHHHhhC------cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCC
Confidence 99999997654 334556789999999999999999999999999997643222222 1234455555555556
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250 362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE 417 (444)
Q Consensus 362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ 417 (444)
+-.|-..+.+| +...|.. .+.. ...+..+...|++. ++.+.-.|++
T Consensus 233 EW~Qi~IL~lL---~~y~P~~-~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik 278 (746)
T PTZ00429 233 EWGQLYILELL---AAQRPSD-KESA-----ETLLTRVLPRMSHQ-NPAVVMGAIK 278 (746)
T ss_pred hHHHHHHHHHH---HhcCCCC-cHHH-----HHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 65665555554 3343332 1111 23445555555555 4444434333
No 92
>PF05536 Neurochondrin: Neurochondrin
Probab=97.99 E-value=0.00071 Score=70.19 Aligned_cols=241 Identities=15% Similarity=0.073 Sum_probs=151.9
Q ss_pred hHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChh---hhhhcccCCcHHHHHHHHhcC-------CHHHHHHHHH
Q 038250 170 VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGE---GLTYLGSASSMRCMVWFLKSG-------DLSRRRNAVL 239 (444)
Q Consensus 170 i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~---~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~ 239 (444)
+..-+.+|+.. +-+-+-.++..+...+..++. .+..|.++=+.+.|-++|+++ ....+.-|+.
T Consensus 7 l~~c~~lL~~~-------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 7 LEKCLSLLKSA-------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred HHHHHHHhccC-------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 44556677432 222345566666655555553 234566777789999999873 3556677999
Q ss_pred HHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc
Q 038250 240 VLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ 319 (444)
Q Consensus 240 ~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~ 319 (444)
+|..++ .+++.+..= ...+-||.|++.+.+..+.+....+..+|..++.+++ .+..+++.|+|+.|.+.+.+ .
T Consensus 80 vL~~f~-~~~~~a~~~-~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~----G~~aLl~~g~v~~L~ei~~~-~ 152 (543)
T PF05536_consen 80 VLAAFC-RDPELASSP-QMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE----GAKALLESGAVPALCEIIPN-Q 152 (543)
T ss_pred HHHHHc-CChhhhcCH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH----hHHHHHhcCCHHHHHHHHHh-C
Confidence 999995 466554222 2247799999999988444899999999999998876 89999999999999999987 5
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcCC----CChHHHHHHHhhcChhHHHHHHHHHHHHccccccc-hHHHHHHHHhhC
Q 038250 320 RSLCEKALSVLDGLCSSDYGRGDAYNNS----LIFPVIVKKILRVSDLATEFAVSILWKLCKNEERE-EKTAFAEALQVG 394 (444)
Q Consensus 320 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~----g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~g 394 (444)
+...+.|+.+|.+++.... ....-.+. ..++.+-..+.......+=..+..|..+-...+.. .......---..
T Consensus 153 ~~~~E~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~ 231 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD 231 (543)
T ss_pred cchHHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence 6678999999999886433 11110111 22333333333333334445566666655543200 000001111233
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 395 AFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 395 ~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+..-|..+|++..++..|..|..+...+-..
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4455666888887777777776655544433
No 93
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=5.2e-06 Score=81.17 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=55.7
Q ss_pred cCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC-----CCccHHHHHHHHHHHH
Q 038250 29 MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE-----PIPNHTIRRMIQDWCV 102 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~-----l~~n~~l~~~i~~~~~ 102 (444)
.+..+..+|-|.||...+.+||+++|||+||..||.+.. .....||.|+..+.... ..+|.....++..|..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~l--d~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSL--DQETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHh--ccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 345568889999999999999999999999999999977 46678999998886431 2224555566665554
No 94
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00067 Score=73.13 Aligned_cols=182 Identities=15% Similarity=0.093 Sum_probs=126.7
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
-.++.+-.+|.+.++.-|..|..+|..++.+..+.-... -..+++..+..|+++ +|.++-+|+.+|..++.+-. +
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~--l~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~--p 422 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN--LPKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQ--P 422 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH--HHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhc--H
Confidence 346667777889999999999999999976665443333 246777777888888 89999999999999998854 2
Q ss_pred chhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHH-----HHhhcChhHHHHHHH
Q 038250 297 KPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVK-----KILRVSDLATEFAVS 370 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~-----ll~~~~~~~~~~a~~ 370 (444)
....--..-.++.|+..+.+. +..++.+|+.+|-|++..-. +..+ .+.++.|++ ++.++++.+++.++.
T Consensus 423 -~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l---~pYLd~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 423 -EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSIL---EPYLDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred -HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHH---HHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 233333445777899999765 67899999999999986322 2222 133444444 334568899999999
Q ss_pred HHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHH
Q 038250 371 ILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKE 413 (444)
Q Consensus 371 ~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~ 413 (444)
+++.++.. .+..-.-.=.-.+|.|..+|++......|.
T Consensus 498 aIasvA~A-----A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 498 AIASVADA-----AQEKFIPYFDRLMPLLKNFLQNADDKDLRE 535 (1075)
T ss_pred HHHHHHHH-----HhhhhHhHHHHHHHHHHHHHhCCCchhhHH
Confidence 99999873 111111113566788888888884344443
No 95
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.89 E-value=0.0016 Score=63.10 Aligned_cols=231 Identities=9% Similarity=0.043 Sum_probs=166.1
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
.+.+.+.-|+..|..+... ++.|..++.++++..|+..|.+. .. +.++|...+-++. .++-++..-+.+...+
T Consensus 169 ~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~-~~----~~QlQYqsifciW-lLtFn~~~ae~~~~~~ 241 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILAST-KC----GFQLQYQSIFCIW-LLTFNPHAAEKLKRFD 241 (442)
T ss_pred CCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhcc-Cc----chhHHHHHHHHHH-HhhcCHHHHHHHhhcc
Confidence 3566788889999999987 56999999999999999999532 22 5889999988888 8888887777777789
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcch------hhHHHhhcccccHHHHHHHhcCC--CChHHHHHHHHHH---
Q 038250 218 SMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDH------RKVNVLLDIEGAIEPLFKLIKEP--ICPTATKASLVVV--- 285 (444)
Q Consensus 218 ~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~------~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~a~~aL--- 285 (444)
.|+.|+++++.. ...+-.-.+.++.|+.+..+ +.+..+ .. +.++.-++.|+.. .+++.....-..-
T Consensus 242 li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m-v~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 242 LIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM-VL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKL 319 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH-Hh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 999999999876 46677778999999986663 344455 43 5667777777654 2333333222211
Q ss_pred ----HHHhcCCC-----------------CC---CchhHHHHhc--CcHHHHHHHhhcc-ccchHHHHHHHHHHhcC-Ch
Q 038250 286 ----YRTITSAS-----------------AT---EKPIQKFVDM--GLVSLLLEMLVDA-QRSLCEKALSVLDGLCS-SD 337 (444)
Q Consensus 286 ----~~L~~~~~-----------------~~---~~~~~~i~~~--g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~-~~ 337 (444)
-.|++.++ +. .+|...+-+. ..+..|+++|... ++.+.--|+.=+..... .+
T Consensus 320 ~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP 399 (442)
T KOG2759|consen 320 KNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP 399 (442)
T ss_pred HHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc
Confidence 12222210 00 2466666654 4789999999855 56665556666666654 67
Q ss_pred hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 338 YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 338 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
+++..+ .+.||=+.++++|...++.++.+|+.++..|-.+
T Consensus 400 ~gk~vv-~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 400 EGKAVV-EKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hHhHHH-HHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 777777 8899999999999989999999999998877553
No 96
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.00075 Score=71.82 Aligned_cols=184 Identities=10% Similarity=0.009 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHH
Q 038250 142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRC 221 (444)
Q Consensus 142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~ 221 (444)
.+.+|+..|.++..-++=....-..-|+.|-+++||.+. ..+++-.-+-+=..+++.++..+..+++.++-..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~-------a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~Y 558 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS-------ARELRPILVFIWAKILAVDPSCQADLVKENGYKY 558 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc-------hHhhhhhHHHHHHHHHhcCchhHHHHHhccCcee
Confidence 455666666666655544444455669999999999653 2444433333334577888888888888888888
Q ss_pred HHHHHhc-C--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 222 MVWFLKS-G--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 222 Lv~lL~~-~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
.++.|.. + +++-|..|+.+|..+..+.....+.. -..+.|..-+..|.++..+-.+...+-+|..|-.+-+ ++
T Consensus 559 F~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~ac-l~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~---~A 634 (1387)
T KOG1517|consen 559 FLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKAC-LNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD---EA 634 (1387)
T ss_pred EEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHh-ccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc---hh
Confidence 8888876 3 46889999999999977766666655 4567788777888875357788888989999987764 56
Q ss_pred hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250 299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 336 (444)
+-.=++.++.+.|+.+|++.-++++..|+-+|..+...
T Consensus 635 rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 635 RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 66668899999999999999999999999999988874
No 97
>PTZ00429 beta-adaptin; Provisional
Probab=97.85 E-value=0.0096 Score=63.85 Aligned_cols=255 Identities=12% Similarity=0.081 Sum_probs=159.3
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
..+++.+.+. |.+.++-.-..|...++.+++.. +. ++..|.+=+ . +.++.++..|+++|. .+.
T Consensus 71 ~dVvk~~~S~----d~elKKLvYLYL~~ya~~~pela--lL---aINtl~KDl---~----d~Np~IRaLALRtLs-~Ir 133 (746)
T PTZ00429 71 VDVVKLAPST----DLELKKLVYLYVLSTARLQPEKA--LL---AVNTFLQDT---T----NSSPVVRALAVRTMM-CIR 133 (746)
T ss_pred HHHHHHhCCC----CHHHHHHHHHHHHHHcccChHHH--HH---HHHHHHHHc---C----CCCHHHHHHHHHHHH-cCC
Confidence 3444544433 66666666666666665544310 00 122222222 2 237899999999998 332
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
. ++.- .-.++.+.+.|.+.++.+|..|+.++.+|-..+++ .+ ...|.++.|.++|.+. ++.++.+|+.+
T Consensus 134 ~-~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv-~~~~~~~~L~~LL~D~-dp~Vv~nAl~a 202 (746)
T PTZ00429 134 V-SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LF-YQQDFKKDLVELLNDN-NPVVASNAAAI 202 (746)
T ss_pred c-HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cc-cccchHHHHHHHhcCC-CccHHHHHHHH
Confidence 2 1111 12356677778888999999999999999444443 44 4468999999999887 89999999999
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA 364 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~ 364 (444)
|..+..... .. .-...+.+..|+..|.+.++-.+-..+.+|.... +...... ...+..+...|++.++.+
T Consensus 203 L~eI~~~~~----~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AV 272 (746)
T PTZ00429 203 VCEVNDYGS----EK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA---ETLLTRVLPRMSHQNPAV 272 (746)
T ss_pred HHHHHHhCc----hh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH---HHHHHHHHHHhcCCCHHH
Confidence 999986653 22 2234556777788887767767776777775432 2222222 134666777777778888
Q ss_pred HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
.-.|++++..+.... +.+....+ -.....+|+.|+ ++ ++.+|-.+..-++.+.
T Consensus 273 Vl~Aik~il~l~~~~---~~~~~~~~-~~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 273 VMGAIKVVANLASRC---SQELIERC-TVRVNTALLTLS-RR-DAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHHHHHHhcCcC---CHHHHHHH-HHHHHHHHHHhh-CC-CccHHHHHHHHHHHHH
Confidence 889999999887642 12222222 122336667664 33 5678877776555544
No 98
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.83 E-value=0.0036 Score=63.55 Aligned_cols=268 Identities=13% Similarity=0.050 Sum_probs=176.4
Q ss_pred HHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhc---ccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHH
Q 038250 146 LVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFS---KTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCM 222 (444)
Q Consensus 146 Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~---~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~L 222 (444)
|+.+|+.+.++ +.+...+....++..|+++-.-.. +.....+..+..+|+.+|.+.+-.++..|..+++.|..+.+
T Consensus 1 ~L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 35667777654 456666666666666665541000 00112368899999999998888999999999999999999
Q ss_pred HHHHhcC-----CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC----------------CCChHHHHHH
Q 038250 223 VWFLKSG-----DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE----------------PICPTATKAS 281 (444)
Q Consensus 223 v~lL~~~-----~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~----------------~~~~~~~~~a 281 (444)
+..|+.. +.+..--..++|+-+++...+.+..+....+++..|+..|.. ..+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 788888899999999877777777775777888888876641 0134567888
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---------ccchHHHHHHHHHHhcCChhhH--------HHH-
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---------QRSLCEKALSVLDGLCSSDYGR--------GDA- 343 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---------~~~~~~~a~~~L~~L~~~~~~~--------~~i- 343 (444)
+.+++|+..+.. ....-...+.++.|+.+|..- -.....+++.+|.++--..... ..+
T Consensus 160 LKllFNit~~~~----~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~ 235 (446)
T PF10165_consen 160 LKLLFNITLHYP----KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLF 235 (446)
T ss_pred HHHHHHhhhccC----cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCccccc
Confidence 999999988764 111113455677777665421 2345778888888883211110 000
Q ss_pred --hcCCCChHHHHHHHhhc----C--h--hHHHHHHHHHHHHccccccchHHHHHHHH-----------------hhChH
Q 038250 344 --YNNSLIFPVIVKKILRV----S--D--LATEFAVSILWKLCKNEEREEKTAFAEAL-----------------QVGAF 396 (444)
Q Consensus 344 --~~~~g~i~~Lv~ll~~~----~--~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-----------------~~g~l 396 (444)
..+...+..|+++|... . . ..-..-+.+|..++... +..+..+ ....-
T Consensus 236 ~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-----~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~ 310 (446)
T PF10165_consen 236 PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-----REVRKYLRARLLPPDKDRKKPPEKGDTLR 310 (446)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-----HHHHHHHHHHhCCChhhcccCCCCCcchH
Confidence 02223567777776541 1 1 23345666777777642 2222222 23455
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 397 QKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 397 ~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
..|+++|.+. .+.+|..++.+|-.+++
T Consensus 311 ~rLlrLmt~~-~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 311 SRLLRLMTSP-DPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHHHhCCC-CchHHHHHHHHHHHHHh
Confidence 6899999888 59999999998866654
No 99
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.81 E-value=7.7e-06 Score=70.04 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
|.|.||...|+.||.+.|||.||..|..+-. +....|-+|++...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y--~kg~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKY--QKGDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHh--ccCCcceecchhhc
Confidence 8999999999999999999999999988876 45568999987654
No 100
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00049 Score=64.01 Aligned_cols=188 Identities=18% Similarity=0.167 Sum_probs=128.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
+-.++.+|.+.++.++..|+.-+..+++. ..+.......-.++.|.+|+... .+ .+.|+.+|.|++.... .
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~----l 75 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEE----L 75 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHH----H
Confidence 45688999999999999999999999543 44444433445788889999876 34 7789999999999986 7
Q ss_pred hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhc-CC----CChHHHHHHHhhc--ChhH-HHHHHH
Q 038250 299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYN-NS----LIFPVIVKKILRV--SDLA-TEFAVS 370 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~----g~i~~Lv~ll~~~--~~~~-~~~a~~ 370 (444)
++.+.+. .+..++..+.+......+..+.+|.||+..++....+.. .. .++..++..+-.. +... -.+-+-
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 8888877 888899999888778889999999999998877665521 11 3344444434322 2222 266778
Q ss_pred HHHHHccccccchHHHHHHHHhhChHH--HHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 371 ILWKLCKNEEREEKTAFAEALQVGAFQ--KLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 371 ~L~~L~~~~~~~~~~~~~~~~~~g~l~--~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
++.+|+++ +..+.-......++ +|+.+-+.+ +..-|...+..++++
T Consensus 155 vf~nls~~-----~~gR~l~~~~k~~p~~kll~ft~~~-s~vRr~GvagtlkN~ 202 (353)
T KOG2973|consen 155 VFANLSQF-----EAGRKLLLEPKRFPDQKLLPFTSED-SQVRRGGVAGTLKNC 202 (353)
T ss_pred HHHHHhhh-----hhhhhHhcchhhhhHhhhhcccccc-hhhhccchHHHHHhh
Confidence 88999985 34444444433333 444444422 444445555566664
No 101
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=5.6e-06 Score=78.84 Aligned_cols=47 Identities=21% Similarity=0.462 Sum_probs=38.7
Q ss_pred cccccccccCcCc---eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 37 FRCPISLDLMKDP---VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 37 ~~Cpic~~~~~~P---v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
++|-||++-|.+= ..++|+|.|...||..|+ .+....||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL-~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWL-TQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhH-hhcCccCCCCCCcCCC
Confidence 5999999999853 456999999999999999 3445679999886543
No 102
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.79 E-value=0.00041 Score=63.94 Aligned_cols=189 Identities=15% Similarity=0.148 Sum_probs=113.8
Q ss_pred hcCCHHHHHHHHHHHHHHHhcc--hhhHHHh-hcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 038250 227 KSGDLSRRRNAVLVLREIVSSD--HRKVNVL-LDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFV 303 (444)
Q Consensus 227 ~~~~~~~~~~A~~~L~~L~s~~--~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~ 303 (444)
.+.+.+.+..|...|..+...+ ......+ ..-..++..++..+.+. ...+.+.|+.+|..|+..-. ..-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~---~~~~~~- 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLG---SHFEPY- 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHG---GGGHHH-
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHh---HhHHHH-
Confidence 4568999999999999997655 2222222 11124556777777665 56789999999999998754 122222
Q ss_pred hcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccch
Q 038250 304 DMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREE 383 (444)
Q Consensus 304 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 383 (444)
-...+|.|++.+.++...+++.|..+|..++..-.....++ ++.+...+.+.++.++..++..|..+....+. +
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~-~ 165 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGS-D 165 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc-h
Confidence 33588999999998888899999999999987543112220 33444445556889999999888887765330 0
Q ss_pred HHHHH-HHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250 384 KTAFA-EALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 384 ~~~~~-~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~ 427 (444)
..... ...-..+++.+...+... ++.+|+.|..++..+.+++.
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-
T ss_pred HhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCC
Confidence 11111 111145677777788777 99999999999888877753
No 103
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.78 E-value=0.0058 Score=61.05 Aligned_cols=197 Identities=15% Similarity=0.018 Sum_probs=129.7
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD 248 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~ 248 (444)
+++.|+..|... . +.++...++.++. ..+. ..++..|+..|.+.+..++..++.+|..+
T Consensus 55 a~~~L~~aL~~d--~----~~ev~~~aa~al~---~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---- 113 (410)
T TIGR02270 55 ATELLVSALAEA--D----EPGRVACAALALL---AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---- 113 (410)
T ss_pred HHHHHHHHHhhC--C----ChhHHHHHHHHHh---ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----
Confidence 688888888421 1 4566655544443 1111 12489999999999998999999999865
Q ss_pred hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHH
Q 038250 249 HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALS 328 (444)
Q Consensus 249 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~ 328 (444)
...+..+.|+.+|++. ++.++..++.++...- . ...+.|..+|.+.++.++..|+.
T Consensus 114 --------~~~~a~~~L~~~L~~~-~p~vR~aal~al~~r~--~-------------~~~~~L~~~L~d~d~~Vra~A~r 169 (410)
T TIGR02270 114 --------GGRQAEPWLEPLLAAS-EPPGRAIGLAALGAHR--H-------------DPGPALEAALTHEDALVRAAALR 169 (410)
T ss_pred --------CchHHHHHHHHHhcCC-ChHHHHHHHHHHHhhc--c-------------ChHHHHHHHhcCCCHHHHHHHHH
Confidence 1234557788888877 7888887776665521 1 24568899999999999999999
Q ss_pred HHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc----------cchHH--HHHHHHh----
Q 038250 329 VLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE----------REEKT--AFAEALQ---- 392 (444)
Q Consensus 329 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~----------~~~~~--~~~~~~~---- 392 (444)
+|..|-. ...++.|...+.+.++.++..|+.+|..+..... .+... ....+..
T Consensus 170 aLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~ 238 (410)
T TIGR02270 170 ALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG 238 (410)
T ss_pred HHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCc
Confidence 9998743 4567778777777789999999988866643100 00000 1111111
Q ss_pred hChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 393 VGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 393 ~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
..+++.|..+++.. .+++.++..+-.+..
T Consensus 239 ~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 239 PDAQAWLRELLQAA---ATRREALRAVGLVGD 267 (410)
T ss_pred hhHHHHHHHHhcCh---hhHHHHHHHHHHcCC
Confidence 24556666676654 377777776665543
No 104
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2.5e-05 Score=69.85 Aligned_cols=77 Identities=35% Similarity=0.602 Sum_probs=69.1
Q ss_pred CcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
..+.++|+.++|.|..++|++||+++.|-||.+.-|.++++.-|+ .-|+++.++...++.||.+++..|..|...+.
T Consensus 203 rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvgh-fdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 203 RKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGH-FDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred hccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhcc-CCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999999999999944444 58999999999999999999999999998773
No 105
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.75 E-value=1.4e-05 Score=78.32 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh---cCCCCCCCCCcccCCCC
Q 038250 10 GGRGRRAGKKQPGVESGGEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE---DGNITCPVTNRVLTSFE 86 (444)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~---~~~~~CP~c~~~~~~~~ 86 (444)
++|+...||..-+.+....-..+-.+...|.+|.+.-.||+..+|.|+||+.|+.+|+.. ..+.+||.|...++.+.
T Consensus 510 RmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 510 RMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred HHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 356666676655554434444445566899999999999999999999999999998732 23479999998887653
No 106
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.74 E-value=2.2e-05 Score=77.90 Aligned_cols=69 Identities=23% Similarity=0.514 Sum_probs=53.8
Q ss_pred CCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc-cHHHHHHHHHHHHh
Q 038250 33 TPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP-NHTIRRMIQDWCVE 103 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~-n~~l~~~i~~~~~~ 103 (444)
+++++.||+|..++.+|+.+ .|||.||..|+..|. .. +..||.|+.........+ ....+..+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~-~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESL-SN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIR 88 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhh-cc-CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence 78889999999999999995 999999999999999 33 889999987766543333 44556666555443
No 107
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.72 E-value=3.6e-05 Score=57.64 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=33.6
Q ss_pred ccccccccCcC-ceec-CCcchhcHHHHHHHHHhc-CCCCCCCCCcccC
Q 038250 38 RCPISLDLMKD-PVTL-STGITYDRENIEKWIHED-GNITCPVTNRVLT 83 (444)
Q Consensus 38 ~Cpic~~~~~~-Pv~~-~cg~~~c~~ci~~~~~~~-~~~~CP~c~~~~~ 83 (444)
.||.|...-.+ |+.. .|+|.|...||.+|+..+ ....||.||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 35555544444 6555 899999999999999432 3579999998764
No 108
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.1e-05 Score=72.04 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=40.1
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
|.|-||.+.|.+||.+.|||+||..|..+.+ +....|++|.+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~--qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPY--QKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccc--ccCCcceecccccc
Confidence 7899999999999999999999999988877 45567999988664
No 109
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0073 Score=58.93 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=168.9
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccC-----ccc----chhHhhcCchHHHHHHHHhhcccccccchHHHHH
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKES-----DRN----KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEE 194 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~-----~~~----~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~ 194 (444)
++.++..|... +.+..-..+.-|+.|...+ .+. ...+++.++++.|++-++...++. .++..-...
T Consensus 127 V~slL~LLgHe----NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsv-keea~gv~~ 201 (536)
T KOG2734|consen 127 VQSLLELLGHE----NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESV-KEEADGVHN 201 (536)
T ss_pred HHHHHHHhcCC----CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcc-hhhhhhhHH
Confidence 34444444443 6667777788888887543 222 346677899999999998764432 223445667
Q ss_pred HHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc--
Q 038250 195 ILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK-- 270 (444)
Q Consensus 195 a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~-- 270 (444)
+++++-+.+...++....+++.|.+..|+.-+... -..-+..|..+|.-+...+.+++..++. -.+|..|++-+.
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcchh
Confidence 77888766667777788888887777766654432 3566778888888886667778888854 577888887654
Q ss_pred ---CC---CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh---hHH
Q 038250 271 ---EP---ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY---GRG 341 (444)
Q Consensus 271 ---~~---~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~---~~~ 341 (444)
++ ...+..++.-.+|..+..... |+..++...++....-+++. ....+..++.+|-.+-..++ +..
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~----nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~ 355 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLMAPA----NRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCN 355 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhcChh----hhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHH
Confidence 22 134677888888888888876 99999998888877666665 45567788999988877665 455
Q ss_pred HHhcCCCChHHHHHHHhhc----------ChhHHHHHHHHHHHHccc
Q 038250 342 DAYNNSLIFPVIVKKILRV----------SDLATEFAVSILWKLCKN 378 (444)
Q Consensus 342 ~i~~~~g~i~~Lv~ll~~~----------~~~~~~~a~~~L~~L~~~ 378 (444)
.+ ++.+|+..+..+++.. -....++.+.+|+.+-.+
T Consensus 356 kf-Ve~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 356 KF-VEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HH-HHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 56 7888888888877631 123447777777776653
No 110
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=4.4e-05 Score=70.87 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCCC---CCCCcCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 11 GRGRRAGKKQPGVE---SGGEMELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
..+....+.+|+|+ ..++-+...+..-.||+|...-.+|..+. .|.+||..|+-+|+ .....||+++.+.+
T Consensus 272 ~~k~~l~~p~PpPPh~~~~se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv--~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 272 KIKSTLDPPIPPPPHKQYNSESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYV--VNYGHCPVTGYPAS 346 (357)
T ss_pred hhccCCCCCCCcCChhhcccccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHH--HhcCCCCccCCcch
Confidence 34444455555544 12233334455679999999999998875 69999999999999 46788999988764
No 111
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=2.9e-05 Score=71.25 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=42.5
Q ss_pred ccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 38 RCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.|+||...+.-||.+.|+|.||.-||+-.. ..+..+|++|+.++...
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy-~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSY-KNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchh-hcCCCCCceecCCCCcc
Confidence 699999999999999999999999999865 37788999999999765
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.57 E-value=0.00055 Score=63.04 Aligned_cols=185 Identities=16% Similarity=0.090 Sum_probs=107.9
Q ss_pred CChhHHHHHHHHHHHHhccC--cccchhHhhc--CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhc
Q 038250 138 EDQAGCRDLVAKIKKWTKES--DRNKRCIVDN--GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYL 213 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~--~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i 213 (444)
.|.+.+.+|+..|+.+...+ ......+.+. ..+..++..+.+. ...+...|+.++..+...-...-...
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-------Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-------RSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----------HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 48899999999999999876 2233333321 4444555555322 45677788877773222111111111
Q ss_pred ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhccccc-HHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250 214 GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGA-IEPLFKLIKEPICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 214 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~-i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 292 (444)
-...+|.|+..+.+++..+++.|..+|..+.....-.. .+ ++.+...+.+. ++.++..++..|..+....
T Consensus 92 -~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-------~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 92 -ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP-------KILLEILSQGLKSK-NPQVREECAEWLAIILEKW 162 (228)
T ss_dssp -HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-
T ss_pred -HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-------HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHc
Confidence 24568889898888889999999999999964332011 22 45566667776 8999999999888876553
Q ss_pred CCCCchhHHHHh----cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHH
Q 038250 293 SATEKPIQKFVD----MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRG 341 (444)
Q Consensus 293 ~~~~~~~~~i~~----~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 341 (444)
. .....+-. ...++.+..++.+.++++++.|-.++..+..+-..+.
T Consensus 163 ~---~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 163 G---SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred c---chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 2 01122211 3477888888899999999999999999866444443
No 113
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.027 Score=53.16 Aligned_cols=226 Identities=14% Similarity=0.069 Sum_probs=153.1
Q ss_pred ChhHHHHHHHHHHHHhccCccc----chhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRN----KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG 214 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~----~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~ 214 (444)
|..++.-|+..+..+..+++.| ...++.+|..+.++..+. .. |.++...|...+. -++..+..-..|.
T Consensus 95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg---ge----ddeVAkAAiesik-rialfpaaleaiF 166 (524)
T KOG4413|consen 95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG---GE----DDEVAKAAIESIK-RIALFPAALEAIF 166 (524)
T ss_pred cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc---CC----cHHHHHHHHHHHH-HHHhcHHHHHHhc
Confidence 3445555566666665555533 234567899999999883 22 5778888888887 6677777777777
Q ss_pred cCCcHHHH--HHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250 215 SASSMRCM--VWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 215 ~~g~i~~L--v~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 292 (444)
+......+ +.+--..+.-.+......+-.+.+.+++..... ...|.+..|..-|+...+.-+..++......|+..+
T Consensus 167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesanec-kkSGLldlLeaElkGteDtLVianciElvteLaete 245 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANEC-KKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE 245 (524)
T ss_pred ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHh-hhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh
Confidence 66555433 333334466777888888888888888888888 667988888888876546778888999999998876
Q ss_pred CCCCchhHHHHhcCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhHHHHhcCC-------CChHHHHHHHhhcChh
Q 038250 293 SATEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGRGDAYNNS-------LIFPVIVKKILRVSDL 363 (444)
Q Consensus 293 ~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-------g~i~~Lv~ll~~~~~~ 363 (444)
. .+..+.+.|.|+.+..++... ++--+-.++.....+-+. ++...+ .+. -+|....+++...++.
T Consensus 246 H----greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimdv-seeaicealiiaidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 246 H----GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMDV-SEEAICEALIIAIDGSFEMIEMNDPD 319 (524)
T ss_pred h----hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhhc-CHHHHHHHHHHHHHhhHHhhhcCCch
Confidence 5 788888999999999999743 444444455554444331 111111 111 1333444545556788
Q ss_pred HHHHHHHHHHHHcccc
Q 038250 364 ATEFAVSILWKLCKNE 379 (444)
Q Consensus 364 ~~~~a~~~L~~L~~~~ 379 (444)
.++.|+-+|..+.++.
T Consensus 320 aieaAiDalGilGSnt 335 (524)
T KOG4413|consen 320 AIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHhccCCc
Confidence 8999999999998853
No 114
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.56 E-value=0.014 Score=57.13 Aligned_cols=187 Identities=20% Similarity=0.195 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.+..+++.+.+. +...+..|...+..+... -+++.|..+|.+ . +..++..|+.+|.
T Consensus 44 ~~~~~~~~l~~~----~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d---~----~~~vr~~a~~aLg-- 99 (335)
T COG1413 44 AADELLKLLEDE----DLLVRLSAAVALGELGSE-----------EAVPLLRELLSD---E----DPRVRDAAADALG-- 99 (335)
T ss_pred hHHHHHHHHcCC----CHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcC---C----CHHHHHHHHHHHH--
Confidence 455566666654 566777777775555322 268899999942 2 5788888888777
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCCh------
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICP------ 275 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~------ 275 (444)
.+....+++.|+.+|. +.+..++..++.+|..+ . +.. .+.+|+.++.+....
T Consensus 100 ---------~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~-~-~~~----------a~~~l~~~l~~~~~~~a~~~~ 158 (335)
T COG1413 100 ---------ELGDPEAVPPLVELLENDENEGVRAAAARALGKL-G-DER----------ALDPLLEALQDEDSGSAAAAL 158 (335)
T ss_pred ---------ccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc-C-chh----------hhHHHHHHhccchhhhhhhhc
Confidence 2334567899999998 47899999999999999 2 222 156777777765211
Q ss_pred -----HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCCh
Q 038250 276 -----TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIF 350 (444)
Q Consensus 276 -----~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i 350 (444)
.++..++.+|..+ .+.-+++.+...+.+.+..++..|..+|..+.... ..+.
T Consensus 159 ~~~~~~~r~~a~~~l~~~--------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~ 215 (335)
T COG1413 159 DAALLDVRAAAAEALGEL--------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAA 215 (335)
T ss_pred cchHHHHHHHHHHHHHHc--------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHH
Confidence 1222222222222 23347889999999888899999999999988754 2344
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 351 PVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 351 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
+.++..+...+..++..++.+|..+-.
T Consensus 216 ~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 216 DLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 556665555566666666666555443
No 115
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.55 E-value=0.00034 Score=53.80 Aligned_cols=86 Identities=24% Similarity=0.319 Sum_probs=67.6
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCc
Q 038250 219 MRCMVWFL-KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEK 297 (444)
Q Consensus 219 i~~Lv~lL-~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 297 (444)
|+.|++.| ++.++.+|..|+.+|..+ . + ..+++.|+.+++++ ++.++..|+++|..+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-~-~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-G-D----------PEAIPALIELLKDE-DPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-T-H----------HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-C-C----------HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-------
Confidence 68899999 777999999999999855 1 1 14479999999877 89999999999987732
Q ss_pred hhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHH
Q 038250 298 PIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLD 331 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~ 331 (444)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 -------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23799999999876 4456888888874
No 116
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.55 E-value=0.00012 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=35.8
Q ss_pred hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250 207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~ 245 (444)
++++..+.+.|+++.|+.+|++++++++..|+++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888889999999999999999999999999999994
No 117
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.53 E-value=0.00016 Score=46.87 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=36.1
Q ss_pred chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+++..+++.|++++|+++|.+++..+++.++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 388899999999999999998899999999999999973
No 118
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.01 Score=60.32 Aligned_cols=228 Identities=14% Similarity=0.142 Sum_probs=143.5
Q ss_pred hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250 166 DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 166 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~ 245 (444)
+.+.++.|-.+|.++++. ...+++.|..+...++..-..... .-.+|.++.-+....+..+..++..|+.++
T Consensus 211 EPyiv~~lp~il~~~~d~----~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDK----INKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CchHHhhHHHHHHHhhcc----chhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345667777777666443 466666666655533332222111 122444444444447888999999999996
Q ss_pred hcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHH
Q 038250 246 SSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK 325 (444)
Q Consensus 246 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 325 (444)
...+..-... ...+||-|.+.|-+. .+++++++-.+|..+++--+ |.. |.. .+|.|++.+.++...+ ..
T Consensus 283 ~~ap~qLs~~--lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svid----N~d-I~~--~ip~Lld~l~dp~~~~-~e 351 (569)
T KOG1242|consen 283 DCAPKQLSLC--LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVID----NPD-IQK--IIPTLLDALADPSCYT-PE 351 (569)
T ss_pred HhchHHHHHH--HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhc----cHH-HHH--HHHHHHHHhcCcccch-HH
Confidence 5555433333 368999999999888 79999999999999998765 433 222 5888888888765443 34
Q ss_pred HHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc----ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH
Q 038250 326 ALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV----SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL 401 (444)
Q Consensus 326 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ 401 (444)
++..|..=.-.. .+++-.+..++.+|.++ +...+..++.+.+|+|.--++ +..+ +-.++.|+.
T Consensus 352 ~~~~L~~ttFV~------~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD--p~~l-----apfl~~Llp 418 (569)
T KOG1242|consen 352 CLDSLGATTFVA------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED--PKDL-----APFLPSLLP 418 (569)
T ss_pred HHHhhcceeeee------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC--HHHH-----hhhHHHHhh
Confidence 444444322111 15556677777777653 556678999999999985321 2222 344444444
Q ss_pred ----HHhcCCChHHHHHHHHHH-HHHHhhc
Q 038250 402 ----LLQVGCADKTKEHVSELL-KLLNPHR 426 (444)
Q Consensus 402 ----ll~~~~~~~~k~~a~~ll-~~l~~~~ 426 (444)
.+... .|++|.-+++.| .++.+..
T Consensus 419 ~lk~~~~d~-~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 419 GLKENLDDA-VPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHHHHhcCC-ChhHHHHHHHHHHHHHHHHH
Confidence 44444 699999999988 4444444
No 119
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.46 E-value=0.0069 Score=59.76 Aligned_cols=218 Identities=13% Similarity=0.024 Sum_probs=139.0
Q ss_pred ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-CChHHHHHHHHH
Q 038250 206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-ICPTATKASLVV 284 (444)
Q Consensus 206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~a 284 (444)
++.-|..+.-...++.+..++-+++.+++..+.++++++. .+.+.-+.+ ...++--.++.-|..+ .+..-++.|+..
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~-~~l~id~~ii~SL~~~~~~~~ER~QALkl 91 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQIL-LKLHIDIFIIRSLDRDNKNDVEREQALKL 91 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHH-HHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence 3333333332333444444444555999999999999995 455555555 3456556666666654 245678899999
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA 364 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~ 364 (444)
++.+..... ... -...|.+.+++.+..+.+...+..|+.+|..|+-.+ .+++.++||+..|++.+.+++...
T Consensus 92 iR~~l~~~~----~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 92 IRAFLEIKK----GPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN---PELVAECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHhcC----Ccc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHHHHhccHhH
Confidence 998887753 222 246789999999999888899999999999998632 345578899999999998876668
Q ss_pred HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC------CCh--HHHHHHHHHHHHHHhhccCCCCCCccc
Q 038250 365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG------CAD--KTKEHVSELLKLLNPHRARLECIDSMD 436 (444)
Q Consensus 365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~------~~~--~~k~~a~~ll~~l~~~~~~~~~~~~~~ 436 (444)
.+..+.++..+-.+ +..++-+...--+..++.-+... ... ..-+.++.++..+=+.|.+-=.+...|
T Consensus 164 ~~~l~~~lL~lLd~-----p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 164 SESLLDTLLYLLDS-----PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred HHHHHHHHHHHhCC-----cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 88888888888875 33333332222233333322211 122 122334445555555887655444444
Q ss_pred cc
Q 038250 437 FK 438 (444)
Q Consensus 437 ~~ 438 (444)
++
T Consensus 239 ~~ 240 (371)
T PF14664_consen 239 FR 240 (371)
T ss_pred ch
Confidence 43
No 120
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.017 Score=60.11 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=135.2
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh----hHHHh--------
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR----KVNVL-------- 255 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~----~~~~i-------- 255 (444)
|.+++..|+.+|..+++..-+.-...++.......+.-++++++++..++...=.+++...-+ +.+..
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 445555555555544444333322222233344445556678888888888887777532111 11111
Q ss_pred -----hcccccHHHHHHHhcCC------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh----hcccc
Q 038250 256 -----LDIEGAIEPLFKLIKEP------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML----VDAQR 320 (444)
Q Consensus 256 -----~~~~g~i~~Lv~ll~~~------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL----~~~~~ 320 (444)
+...+++|-|+++|.+. ++-...++|..+|.-.+.... ...++.++.++ ++++-
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~-----------D~Iv~~Vl~Fiee~i~~pdw 378 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG-----------DDIVPHVLPFIEENIQNPDW 378 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc-----------ccchhhhHHHHHHhcCCcch
Confidence 01126678888888642 122345556666655544321 12344555444 45566
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHH
Q 038250 321 SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLL 400 (444)
Q Consensus 321 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll 400 (444)
.-++.|+.++..+-..++.....-...+++|.++.++...+--+++.+.++|..++.+.+ +....+....+.++.|+
T Consensus 379 r~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~---e~~~n~~~l~~~l~~l~ 455 (859)
T KOG1241|consen 379 RNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP---EAIINQELLQSKLSALL 455 (859)
T ss_pred hhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch---hhcccHhhhhHHHHHHH
Confidence 778888888888776555433322335899999999987777888999999999999765 33444455678888888
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 401 LLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 401 ~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+-|... |++-.++.|.+-.|+++
T Consensus 456 ~gL~De--Prva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 456 EGLNDE--PRVASNVCWAFISLAEA 478 (859)
T ss_pred HHhhhC--chHHHHHHHHHHHHHHH
Confidence 877655 77778888866666543
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.41 E-value=0.00028 Score=54.26 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=67.8
Q ss_pred HHHHHHHh-hccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHH
Q 038250 308 VSLLLEML-VDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTA 386 (444)
Q Consensus 308 v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 386 (444)
|+.|++.| .++++.++..++.+|..+- +..+++.|++++.+.++.++..|+.+|..+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 68899999 6778999999999998442 11348899999987899999999999987632
Q ss_pred HHHHHhhChHHHHHHHHhcCCChHHHHHHHHHH
Q 038250 387 FAEALQVGAFQKLLLLLQVGCADKTKEHVSELL 419 (444)
Q Consensus 387 ~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll 419 (444)
..+++.|.+++.++.+..+|..|...|
T Consensus 61 ------~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 ------PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ------HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 347899999999885667788887765
No 122
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0021 Score=64.00 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=136.1
Q ss_pred hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250 209 GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT 288 (444)
Q Consensus 209 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 288 (444)
-|.-+.++.+.++|+++|+..+..+.--+...++|+.-.....+..+ -..|+|..|+.++.+. +...+++..|.|+++
T Consensus 423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~f-L~~~iIdvl~~~v~sK-DdaLqans~wvlrHl 500 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGF-LEKSIIDVLVNLVMSK-DDALQANSEWVLRHL 500 (743)
T ss_pred HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHH-HHhhHHHHHHHHhhcc-hhhhhhcchhhhhhh
Confidence 36678889999999999988666666678888999865555677777 5579999999999977 678999999999999
Q ss_pred hcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhh---HHHHhcCCC----ChHHHHHHHhhcC
Q 038250 289 ITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYG---RGDAYNNSL----IFPVIVKKILRVS 361 (444)
Q Consensus 289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~i~~~~g----~i~~Lv~ll~~~~ 361 (444)
-.+.+ ...+-++...-++..++++..++.-.+++.++.+|.|+..+..- -..+....- ....|++.+...+
T Consensus 501 myncq--~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~n 578 (743)
T COG5369 501 MYNCQ--KNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENN 578 (743)
T ss_pred hhcCc--chhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcC
Confidence 98876 23455677778899999999999999999999999999873322 112211111 3345556555667
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHH
Q 038250 362 DLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLL 403 (444)
Q Consensus 362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll 403 (444)
+...+..+.+|.+++.+ ++.....+. +...+..+-+.|
T Consensus 579 p~~i~~~~yilv~~aa~----d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 579 PMEILEGCYILVRNAAC----DDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred chhhhhhHHHHHHHHhc----cchHHHHHHhHHHHHHHHHHHH
Confidence 77777788889988885 233333333 455555444444
No 123
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0012 Score=65.61 Aligned_cols=195 Identities=14% Similarity=0.119 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHH
Q 038250 142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRC 221 (444)
Q Consensus 142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~ 221 (444)
....++..|..+++.-..-|.-+.+..++++|+++|+. + +..+.-.++..+...+-....-+..+.+.|.|..
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~---P----eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdv 477 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN---P----EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDV 477 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC---c----cceeeccchhhhhheeeeccchHHHHHHhhHHHH
Confidence 34455566666666555567778888899999999942 1 2334444555555333333445667788999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcchhh--HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRK--VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPI 299 (444)
Q Consensus 222 Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~ 299 (444)
|+.++.+.+...|.+..|.|+++.-+++++ -+.+ . .-++..++.+..++ +..+++..+..|+|+.-+..-|++.+
T Consensus 478 l~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~L-a-kig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEksk 554 (743)
T COG5369 478 LVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFL-A-KIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSK 554 (743)
T ss_pred HHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhH-H-hcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccc
Confidence 999999989999999999999996555433 2344 2 35688899999888 78899999999999987543111122
Q ss_pred HHHHhcC----cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcC
Q 038250 300 QKFVDMG----LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNN 346 (444)
Q Consensus 300 ~~i~~~g----~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 346 (444)
..+.... ....|++.+...++-..+..+-+|.+++.++++...++.+
T Consensus 555 dv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 555 DVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred eeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 2222221 3445666666667766777788888888888877776433
No 124
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.32 E-value=0.012 Score=50.27 Aligned_cols=122 Identities=8% Similarity=0.137 Sum_probs=101.3
Q ss_pred HHhhcccccHHHHHHHhcCCCC-----hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--ccchHHH
Q 038250 253 NVLLDIEGAIEPLFKLIKEPIC-----PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEK 325 (444)
Q Consensus 253 ~~i~~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~ 325 (444)
+.| . .||+..|+++++++.. .+....++.++..|-.++- .-...++...|..++..+... +..+...
T Consensus 6 EFI-~-~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~----vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~ 79 (160)
T PF11841_consen 6 EFI-S-RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI----VSWDTLSDSFIKKIASYVNSSAMDASILQR 79 (160)
T ss_pred HHH-h-ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc----CchhhccHHHHHHHHHHHccccccchHHHH
Confidence 455 3 6899999999998842 3677888999999888764 566778888999999999744 6889999
Q ss_pred HHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc
Q 038250 326 ALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE 380 (444)
Q Consensus 326 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~ 380 (444)
|+.+|.+++..+...-..+.++--++.|+..|+..+...+.+|+..+-.|-...+
T Consensus 80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999998777755555788899999999999999999999999988887654
No 125
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.29 E-value=0.018 Score=56.23 Aligned_cols=183 Identities=21% Similarity=0.175 Sum_probs=123.0
Q ss_pred CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250 168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS 247 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~ 247 (444)
-.++.++.++.+. +..++..|...+. .+...-+++.+..+|.+.+..++..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~-------~~~vr~~aa~~l~-----------~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~--~ 102 (335)
T COG1413 43 EAADELLKLLEDE-------DLLVRLSAAVALG-----------ELGSEEAVPLLRELLSDEDPRVRDAAADALGEL--G 102 (335)
T ss_pred hhHHHHHHHHcCC-------CHHHHHHHHHHHh-----------hhchHHHHHHHHHHhcCCCHHHHHHHHHHHHcc--C
Confidence 3577778888532 4667777777755 233345689999999999999999999987777 2
Q ss_pred chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcccc-------
Q 038250 248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQR------- 320 (444)
Q Consensus 248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~------- 320 (444)
+ ...+++|+.++..+.+..++..++++|..+-... ++.+|+..+.+...
T Consensus 103 ~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------------a~~~l~~~l~~~~~~~a~~~~ 158 (335)
T COG1413 103 D----------PEAVPPLVELLENDENEGVRAAAARALGKLGDER--------------ALDPLLEALQDEDSGSAAAAL 158 (335)
T ss_pred C----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------------hhHHHHHHhccchhhhhhhhc
Confidence 2 2345778888885337889999999988885432 37888888876542
Q ss_pred -----chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhCh
Q 038250 321 -----SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGA 395 (444)
Q Consensus 321 -----~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~ 395 (444)
.++..++..|..+ .+.-.++.+...+...+..++..|+.+|..+.... ..+
T Consensus 159 ~~~~~~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------------~~~ 214 (335)
T COG1413 159 DAALLDVRAAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------------VEA 214 (335)
T ss_pred cchHHHHHHHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------------hhH
Confidence 1233333333332 55567888888888878889999999998888741 233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHH
Q 038250 396 FQKLLLLLQVGCADKTKEHVSELL 419 (444)
Q Consensus 396 l~~Ll~ll~~~~~~~~k~~a~~ll 419 (444)
.+.+...+... +..++..++..|
T Consensus 215 ~~~l~~~~~~~-~~~vr~~~~~~l 237 (335)
T COG1413 215 ADLLVKALSDE-SLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHh
Confidence 34444455444 555555544433
No 126
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=8.2e-05 Score=77.40 Aligned_cols=48 Identities=25% Similarity=0.531 Sum_probs=41.2
Q ss_pred CCccccccccccCcC-----ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 34 PNHFRCPISLDLMKD-----PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~-----Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
..+..|+||.+.|.. |..++|||.|+..|+.+|+ +...+||.|+..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~--er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWF--ERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHH--HHhCcCCcchhhhh
Confidence 346799999999999 7888999999999999999 34678999998443
No 127
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.24 E-value=0.07 Score=54.26 Aligned_cols=236 Identities=15% Similarity=0.125 Sum_probs=154.4
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcc-cC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG-SA 216 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~-~~ 216 (444)
.+.....+|++.|.+..-.++..|+.+++.|+.+.+++.|+...+. ..+.++.--..++|........+.+..++ +.
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~--~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS--SQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc--CCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 3678899999999999999999999999999999999999765322 12467778888888855556667776555 56
Q ss_pred CcHHHHHHHHhcC-----------------CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-------
Q 038250 217 SSMRCMVWFLKSG-----------------DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP------- 272 (444)
Q Consensus 217 g~i~~Lv~lL~~~-----------------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~------- 272 (444)
+++..++..|... +.+....+.++++|++...+..... ...+.++.|+.++..-
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~--~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPE--EFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccch--hhhHHHHHHHHHHHHHhccCCCC
Confidence 8888888876420 2334566888999996444433221 1245666666664411
Q ss_pred -CChHHHHHHHHHHHHHhcCCCC--------CCchhHHHHhcCcHHHHHHHhhcc-----c---cchHHHHHHHHHHhcC
Q 038250 273 -ICPTATKASLVVVYRTITSASA--------TEKPIQKFVDMGLVSLLLEMLVDA-----Q---RSLCEKALSVLDGLCS 335 (444)
Q Consensus 273 -~~~~~~~~a~~aL~~L~~~~~~--------~~~~~~~i~~~g~v~~Lv~lL~~~-----~---~~~~~~a~~~L~~L~~ 335 (444)
.......++..+|.|+-..... .+...........+..|+++|... + .+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 1245677788888887321110 000011123345678888888621 1 2355667777888877
Q ss_pred Chh-hHHHHhc---------------CCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 336 SDY-GRGDAYN---------------NSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 336 ~~~-~~~~i~~---------------~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
... .|+.+-. ....-..|+++|.+....++..+...|+.||.
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 543 3332211 22456678888877678899999999999998
No 128
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.033 Score=56.15 Aligned_cols=280 Identities=16% Similarity=0.134 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccch-hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKR-CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL 199 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L 199 (444)
.+.+...+.+++.. +...++.+.+-|-.+.++-...+. .+--.+.||.|-.-+- ..++..+.-.+..|
T Consensus 123 Fn~iFdvL~klsaD----sd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy-------~~n~~tR~flv~Wl 191 (675)
T KOG0212|consen 123 FNEIFDVLCKLSAD----SDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIY-------VINPMTRQFLVSWL 191 (675)
T ss_pred hHHHHHHHHHHhcC----CccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHh-------cCCchHHHHHHHHH
Confidence 34566667777664 334556666666666554322222 2322344444444441 11567777777777
Q ss_pred HhhcCCChhhhhhcc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250 200 TLLFPLAGEGLTYLG-SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT 278 (444)
Q Consensus 200 ~~~l~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 278 (444)
. .+-.-++ .+.+. -...++-|..+|+.++++++..+-.+|.++...-...-..+ .....++.||.-+.++ ++..+
T Consensus 192 ~-~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~~~~i~vlv~~l~ss-~~~iq 267 (675)
T KOG0212|consen 192 Y-VLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DYDDMINVLVPHLQSS-EPEIQ 267 (675)
T ss_pred H-HHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-CcccchhhccccccCC-cHHHH
Confidence 7 3333332 23332 25667888889988999999776665555532111111122 3446788999989888 78888
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcccc-chHHHHHHH---HHHhcCChhhHHHHhcCCCChHHHH
Q 038250 279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQR-SLCEKALSV---LDGLCSSDYGRGDAYNNSLIFPVIV 354 (444)
Q Consensus 279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~a~~~---L~~L~~~~~~~~~i~~~~g~i~~Lv 354 (444)
..|+.-|.....-.. ..-...-.|++..++.++.+.++ .+++.+..+ |..+.........+ .-...+..+.
T Consensus 268 ~~al~Wi~efV~i~g----~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d~~~ii~vl~ 342 (675)
T KOG0212|consen 268 LKALTWIQEFVKIPG----RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-DYGSIIEVLT 342 (675)
T ss_pred HHHHHHHHHHhcCCC----cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-chHHHHHHHH
Confidence 888877887776654 33333457888999999987766 355555433 44455444444333 2234566666
Q ss_pred HHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 355 KKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 355 ~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
+.+.......+-.++..+..|-...|+ ..-......++.|+.-|... ++.+-..+..++..++...
T Consensus 343 ~~l~~~~~~tri~~L~Wi~~l~~~~p~-----ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 343 KYLSDDREETRIAVLNWIILLYHKAPG-----QLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhCcc-----hhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCc
Confidence 666666667777777777777665442 22233578888888888777 7888888887777776544
No 129
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.036 Score=55.84 Aligned_cols=192 Identities=19% Similarity=0.193 Sum_probs=124.2
Q ss_pred CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCH-HHHHHHHHH---HHH
Q 038250 168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDL-SRRRNAVLV---LRE 243 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~~---L~~ 243 (444)
..++.++.-+.+. ++.+|..|+..+...+......-- ..-+|++..++..+.+... .+++.|... |..
T Consensus 250 ~~i~vlv~~l~ss-------~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 250 DMINVLVPHLQSS-------EPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred cchhhccccccCC-------cHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 4566777767432 689999999988866665443322 2236777777777765544 344444433 444
Q ss_pred HHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchH
Q 038250 244 IVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLC 323 (444)
Q Consensus 244 L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~ 323 (444)
+. ..+..++.| .-..+|..|-+.+.++ ..+.+-.++.-+..|-.... ++...-.....+.|++-|++.+..++
T Consensus 322 l~-s~~~~~~~i-d~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p----~ql~~h~~~if~tLL~tLsd~sd~vv 394 (675)
T KOG0212|consen 322 LV-SSERLKEEI-DYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAP----GQLLVHNDSIFLTLLKTLSDRSDEVV 394 (675)
T ss_pred HH-hhhhhcccc-chHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCc----chhhhhccHHHHHHHHhhcCchhHHH
Confidence 42 233344335 4345777788888877 68888888888888877665 66666667899999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 324 EKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 324 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
..++.+|+++|.++....-. ..+..|+++..+........+.-++..||..
T Consensus 395 l~~L~lla~i~~s~~~~~~~----~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 395 LLALSLLASICSSSNSPNLR----KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHHHHHHhcCcccccHH----HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 99999999999866543111 1223344433333434445555566666653
No 130
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.0003 Score=62.63 Aligned_cols=53 Identities=25% Similarity=0.468 Sum_probs=45.9
Q ss_pred CccccccccccCcCce----ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250 35 NHFRCPISLDLMKDPV----TLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP 89 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv----~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~ 89 (444)
..|.||+|.+.+.+.+ .-+|||+||..|.++++ .+...||+|+.++..+++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEkli--r~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLI--RKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhc--cccccccCCCCcCcccceEe
Confidence 4589999999999853 33899999999999998 77789999999999887665
No 131
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.08 E-value=0.00031 Score=67.47 Aligned_cols=34 Identities=12% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHH
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWI 67 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~ 67 (444)
+++++||||..+|++|++++|||+.|+.|-...+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 5789999999999999999999999999988766
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.048 Score=58.70 Aligned_cols=226 Identities=15% Similarity=0.057 Sum_probs=155.7
Q ss_pred HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC
Q 038250 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE 271 (444)
Q Consensus 192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~ 271 (444)
+..|+..|...+-..+=-...-..-|+.|.+++||++...++|..-+.+=..+.+.++....-+ ...++-.-.++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL-vKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL-VKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH-HhccCceeEEEEecC
Confidence 4566666665555544333333456999999999999999999888888788877776655555 334556666666665
Q ss_pred -C-CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250 272 -P-ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSDYGRGDAYNNSL 348 (444)
Q Consensus 272 -~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 348 (444)
. .+++.+.-|+-+|..++.+-. ..+....+.+.+..-++.|.++ .+-++.=++-.|+.|=.+-+.-+-...+.+
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~---lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~ 642 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFK---LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDN 642 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccc---hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccccc
Confidence 2 235788888999999988754 4566778889999888999875 455667777778888765555555557889
Q ss_pred ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHH-----------HHhhChH----HHHHHHHhcCCChHHHH
Q 038250 349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAE-----------ALQVGAF----QKLLLLLQVGCADKTKE 413 (444)
Q Consensus 349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-----------~~~~g~l----~~Ll~ll~~~~~~~~k~ 413 (444)
+.+.|+.+|....++++..|+-+|..+-....+..++.... +.-+..+ ..++.+++.+ ++-++.
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ 721 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRT 721 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHH
Confidence 99999999988889999999999999877421111111111 1112223 3677788888 777666
Q ss_pred HHHHHHHHH
Q 038250 414 HVSELLKLL 422 (444)
Q Consensus 414 ~a~~ll~~l 422 (444)
..+..|..+
T Consensus 722 ev~v~ls~~ 730 (1387)
T KOG1517|consen 722 EVVVALSHF 730 (1387)
T ss_pred HHHHHHHHH
Confidence 655544443
No 133
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00042 Score=65.36 Aligned_cols=49 Identities=27% Similarity=0.561 Sum_probs=40.0
Q ss_pred CCCccccccccccCcC-------------ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 33 TPNHFRCPISLDLMKD-------------PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~-------------Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-..+-+|-||.+-|.. |.-++|||.+..+|+..|. +..-+||.||.++-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~--ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL--ERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHH--HhccCCCcccCccc
Confidence 3556799999998543 3678999999999999999 45568999998853
No 134
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.01 E-value=0.003 Score=49.71 Aligned_cols=68 Identities=7% Similarity=0.131 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh
Q 038250 233 RRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK-EPICPTATKASLVVVYRTITSASATEKPIQKFVD 304 (444)
Q Consensus 233 ~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~ 304 (444)
.|...+.+|.||+..++.+...+ ...|+||.++.... ++.+|-.+++|.++|+||+.+++ +|+..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~v-r~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~---eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLV-RELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP---ENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHH-HHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH---HHHHHHHh
Confidence 45677899999999999999999 66799999998754 33479999999999999999876 67777765
No 135
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00045 Score=63.52 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=37.6
Q ss_pred cccccccccCcC--c-eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 37 FRCPISLDLMKD--P-VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 37 ~~Cpic~~~~~~--P-v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
--|.||+.-|.. - +.++|.|.|...|+.+|+ ......||+|+.++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~-~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWL-LGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHH-hhhcccCCccCCCCCC
Confidence 479999988753 2 456999999999999999 3345689999987753
No 136
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.00 E-value=0.00081 Score=46.79 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHh
Q 038250 275 PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGL 333 (444)
Q Consensus 275 ~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L 333 (444)
+.++..|+++|.+++.... ....-....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~----~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP----ELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH----HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887764 333345567999999999988889999999999875
No 137
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.99 E-value=0.0013 Score=45.66 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250 231 LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT 288 (444)
Q Consensus 231 ~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 288 (444)
+.+|..|+++|++++...++..... ...+++.|+.+|+++ ++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~--~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY--LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH--HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH--HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4689999999999865555544444 258999999999988 679999999999875
No 138
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0096 Score=63.74 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHhhccc---ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcH
Q 038250 232 SRRRNAVLVLREIVSSDHRKVNVLLDIE---GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLV 308 (444)
Q Consensus 232 ~~~~~A~~~L~~L~s~~~~~~~~i~~~~---g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v 308 (444)
+-.+.+..+|.|+.+.+++....+|.+. |-++.+..+++...++.+++-|+.++.-+..+.+ ....+++.|.+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~----Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE----CVTDLATCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH----HHHHHHhhhHH
Confidence 3456789999999988897777665432 5667777778776678899999999988888876 88889999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh-cChhHHHHHHHHHHHHcc
Q 038250 309 SLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR-VSDLATEFAVSILWKLCK 377 (444)
Q Consensus 309 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~ 377 (444)
..|+.+|.+ -+..++.++.+|+.|++.++.-.+. ...|++..+.+++-. .++..+..|+..|..+..
T Consensus 1816 ~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA-~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1816 TTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA-LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH-HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 999999964 4667899999999999988877777 556888888887754 466777888888887764
No 139
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.045 Score=58.03 Aligned_cols=102 Identities=20% Similarity=0.292 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
+..+..-|.+.|+.+|..|.+++..| ..+ +.+ ..+++++.+++.++ ++.+++.|+-++..+-.-+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l--~~~---el~---~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld------ 158 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLL--RVK---ELL---GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD------ 158 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhc--ChH---HHH---HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC------
Confidence 67777778888999999999988888 222 333 24689999999998 8999999999999997653
Q ss_pred hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+....+.|.+..+..++.+.++.++.+|+.+|..+..
T Consensus 159 ~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 159 KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 5677888999999999999999999999999998865
No 140
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.3 Score=51.51 Aligned_cols=203 Identities=14% Similarity=0.178 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhccccc--------ccchHHHHHHHHHHHhhcCCChh-hhhhc
Q 038250 143 CRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCL--------DENVSVLEEILSTLTLLFPLAGE-GLTYL 213 (444)
Q Consensus 143 ~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~--------~~~~~~~~~a~~~L~~~l~~~~~-~~~~i 213 (444)
...++.-+.++|+.++++-..+.+ .++-||..|+....+.. -.||-+|..+++.|+ ++..++. ..+.+
T Consensus 196 L~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr-iLGq~d~daSd~M 272 (866)
T KOG1062|consen 196 LIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR-ILGQNDADASDLM 272 (866)
T ss_pred eeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH-HhcCCCccHHHHH
Confidence 334444444555554444333333 55666666654311110 247889999999999 6665442 22111
Q ss_pred -----------------ccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH-------------
Q 038250 214 -----------------GSASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI------------- 262 (444)
Q Consensus 214 -----------------~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i------------- 262 (444)
+.+-..+.+..++. ..+...++.|+.+|+.+....+.|-..++- .+..
T Consensus 273 ~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL-n~L~r~V~~d~~avqrH 351 (866)
T KOG1062|consen 273 NDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL-NMLLRVVQQDPTAVQRH 351 (866)
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh-hhHHhhhcCCcHHHHHH
Confidence 11111233333332 246788899999999987777766666632 1111
Q ss_pred -HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC--Chhh
Q 038250 263 -EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS--SDYG 339 (444)
Q Consensus 263 -~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~ 339 (444)
..+++.|+++ ++..++.|+..++.|.... |...|++ .|+..|...+++.+...+.-+..++. .++.
T Consensus 352 r~tIleCL~Dp-D~SIkrralELs~~lvn~~-----Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k 420 (866)
T KOG1062|consen 352 RSTILECLKDP-DVSIKRRALELSYALVNES-----NVRVMVK-----ELLEFLESSDEDFKADIASKIAELAEKFAPDK 420 (866)
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHHhccc-----cHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc
Confidence 2455667777 8899999999888887654 6776654 58888887788899888888888875 3332
Q ss_pred HH------HHhcC------CCChHHHHHHHhhc
Q 038250 340 RG------DAYNN------SLIFPVIVKKILRV 360 (444)
Q Consensus 340 ~~------~i~~~------~g~i~~Lv~ll~~~ 360 (444)
+. .++.. ..++..++.++.++
T Consensus 421 ~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 421 RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred hhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 22 12222 33677777777665
No 141
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.033 Score=57.15 Aligned_cols=268 Identities=12% Similarity=0.105 Sum_probs=163.5
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHh-h---cCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIV-D---NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
++++..|-..+.+.|...+.-|..+|.+++.++++--+.=+ . .-.+|.++++.+. . ++.++..|+.++.
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h---~----spkiRs~A~~cvN 199 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH---P----SPKIRSHAVGCVN 199 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC---C----ChhHHHHHHhhhh
Confidence 44555554444444777888999999999977653211100 1 1256677777743 3 5889999999887
Q ss_pred hhcCCChhhhhhccc-CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250 201 LLFPLAGEGLTYLGS-ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK 279 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 279 (444)
..+-.. +...+.. ...++.+-.+-...++++|.+.|.+|..|....++- .+-.-.++++.+++.-++. +..+.-
T Consensus 200 q~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd~-dE~VAL 274 (885)
T KOG2023|consen 200 QFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQDV-DENVAL 274 (885)
T ss_pred heeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccCc-chhHHH
Confidence 322221 1122221 344555555555668999999999999996444331 2212357888888888877 677888
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHh---cCcHHHHHHHhhcccc------------------------------------
Q 038250 280 ASLVVVYRTITSASATEKPIQKFVD---MGLVSLLLEMLVDAQR------------------------------------ 320 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~~~~~~~~i~~---~g~v~~Lv~lL~~~~~------------------------------------ 320 (444)
.|+.-...++.... +..++. ...||.|++=+...+.
T Consensus 275 EACEFwla~aeqpi-----~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~ 349 (885)
T KOG2023|consen 275 EACEFWLALAEQPI-----CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGED 349 (885)
T ss_pred HHHHHHHHHhcCcC-----cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccc
Confidence 89988888987763 444433 3567777654431111
Q ss_pred --------------------chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh----cChhHHHHHHHHHHHHc
Q 038250 321 --------------------SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR----VSDLATEFAVSILWKLC 376 (444)
Q Consensus 321 --------------------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~----~~~~~~~~a~~~L~~L~ 376 (444)
.+++-.+++|..|+. + .....++.+.-+|+. ..=.++|.++-+|+.++
T Consensus 350 ~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------v-f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 350 ADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------V-FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIA 421 (885)
T ss_pred cccccccccccccccccccccHhhccHHHHHHHHH-------h-hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHH
Confidence 123333444444432 1 112234444444443 34467899999999988
Q ss_pred cccccchHHHHHHHHh--hChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 377 KNEEREEKTAFAEALQ--VGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 377 ~~~~~~~~~~~~~~~~--~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
. | ...-++. ...+|.|+.+|... .+-+|..+-|.|.-++.+
T Consensus 422 E----G---cM~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 422 E----G---CMQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKW 464 (885)
T ss_pred H----H---HhhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhh
Confidence 7 2 3443432 34678888899887 888888888888777754
No 142
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.092 Score=53.65 Aligned_cols=198 Identities=13% Similarity=0.088 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC
Q 038250 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE 271 (444)
Q Consensus 192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~ 271 (444)
...++..|. .+...........-...||.|.+.|....+++|+.+-.+|..+. ...+|.+.. -.+|.|++.+.+
T Consensus 271 K~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~-svidN~dI~----~~ip~Lld~l~d 344 (569)
T KOG1242|consen 271 KMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG-SVIDNPDIQ----KIIPTLLDALAD 344 (569)
T ss_pred HHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH-HhhccHHHH----HHHHHHHHHhcC
Confidence 445556666 33333333334445789999999999999999999999999995 445566633 468999999987
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh----ccccchHHHHHHHHHHhcCChhhHHHHhcCC
Q 038250 272 PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV----DAQRSLCEKALSVLDGLCSSDYGRGDAYNNS 347 (444)
Q Consensus 272 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 347 (444)
+. -.+ ..+ +..|.... ... .|++-.+..++.+|. ..+..++..++.+..|++.--++...+ +
T Consensus 345 p~-~~~-~e~---~~~L~~tt-----FV~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l---a 410 (569)
T KOG1242|consen 345 PS-CYT-PEC---LDSLGATT-----FVA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL---A 410 (569)
T ss_pred cc-cch-HHH---HHhhccee-----eee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH---h
Confidence 72 122 222 33333322 122 234445666666665 447788899999999999866555555 1
Q ss_pred CChHHHHHHHhh----cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250 348 LIFPVIVKKILR----VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE 417 (444)
Q Consensus 348 g~i~~Lv~ll~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ 417 (444)
-.++.|+.-+.. ..+.+++.+.++|..+-.. ..+....+.+|-|.+.++......-+..++.
T Consensus 411 pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~--------~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 411 PFLPSLLPGLKENLDDAVPEVRAVAARALGALLER--------LGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH--------HHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 334444444433 3578889999998766552 1111114555555555555434444444333
No 143
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.12 Score=47.61 Aligned_cols=197 Identities=16% Similarity=0.173 Sum_probs=124.0
Q ss_pred hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 038250 165 VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREI 244 (444)
Q Consensus 165 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L 244 (444)
....+++.|+..|... +..+-++..|..+|.. . ...+..+.+-++.+....++++....+|..+
T Consensus 64 ~~~~Av~~l~~vl~de-----sq~pmvRhEAaealga-~----------~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rl 127 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDE-----SQEPMVRHEAAEALGA-I----------GDPESLEILTKYIKDPCKEVRETCELAIKRL 127 (289)
T ss_pred ccchhhHHHHHHhccc-----ccchHHHHHHHHHHHh-h----------cchhhHHHHHHHhcCCccccchHHHHHHHHH
Confidence 3456889999988432 2257788888888883 1 2234455555655555677777777777776
Q ss_pred HhcchhhHHHhhc----------------ccccHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250 245 VSSDHRKVNVLLD----------------IEGAIEPLFKLIKEPICP-TATKASLVVVYRTITSASATEKPIQKFVDMGL 307 (444)
Q Consensus 245 ~s~~~~~~~~i~~----------------~~g~i~~Lv~ll~~~~~~-~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~ 307 (444)
- .+..++. ..+-+.-|-..|.+...+ --+..|.-.|+|+-.. .+
T Consensus 128 e-----~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E--------------ea 188 (289)
T KOG0567|consen 128 E-----WKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE--------------EA 188 (289)
T ss_pred H-----HhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH--------------HH
Confidence 2 1111210 011122333223222111 1233333344443222 14
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHH
Q 038250 308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKT 385 (444)
Q Consensus 308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~ 385 (444)
|.+|++=+..++.-.+..++-++++|- ..-.||.|.+.|... .+.++-.|+.+|+.++.
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------- 249 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------- 249 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------
Confidence 666667777677778888888888773 345688899988764 67889999999999998
Q ss_pred HHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 386 AFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 386 ~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
...++.|.+.+... .+.+++.|...|.++-
T Consensus 250 -------e~~~~vL~e~~~D~-~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 -------EDCVEVLKEYLGDE-ERVVRESCEVALDMLE 279 (289)
T ss_pred -------HHHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence 35667788888777 8899999998888875
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.80 E-value=0.00064 Score=65.92 Aligned_cols=44 Identities=23% Similarity=0.527 Sum_probs=36.7
Q ss_pred ccccccccccCcCce----ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 36 HFRCPISLDLMKDPV----TLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv----~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.-+||+|++-|.+-+ ++-|.|+|.-.|+.+|+ ..+||+||.-.+
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~----~~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW----DSSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcc----cCcChhhhhhcC
Confidence 349999999999876 45899999999999998 347999986554
No 145
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.037 Score=57.77 Aligned_cols=267 Identities=13% Similarity=0.110 Sum_probs=137.2
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC
Q 038250 127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA 206 (444)
Q Consensus 127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~ 206 (444)
+..-|....+.+++.++..|+-....+-.. +.+...+.|.++.|-+++. ++ ++.|...|+++|..+...+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~---D~----~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLS---DS----NPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhc---CC----CchHHHHHHHHHHHHHHhC
Confidence 333344444445777888887777777543 5677888999999999994 33 6899999999999555544
Q ss_pred hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHH
Q 038250 207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVV 285 (444)
Q Consensus 207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL 285 (444)
.+........-.+..++..|..-+. ..-+.+|-.++...+ +.++. ..++..+...|++. +..++-.+..++
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~~ea----~~i~~r~~p~Lqh~-n~avvlsavKv~ 263 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDSREA----EDICERLTPRLQHA-NSAVVLSAVKVI 263 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCchhH----HHHHHHhhhhhccC-CcceEeehHHHH
Confidence 4311111112223333333322222 222333333321111 11111 12334444444444 444555555555
Q ss_pred HHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc-----------------------------------cchHHHHHHHH
Q 038250 286 YRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ-----------------------------------RSLCEKALSVL 330 (444)
Q Consensus 286 ~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----------------------------------~~~~~~a~~~L 330 (444)
.++..... .....+-...-++|+.++...+ -.++..=+.++
T Consensus 264 l~~~~~~~----~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil 339 (734)
T KOG1061|consen 264 LQLVKYLK----QVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEIL 339 (734)
T ss_pred HHHHHHHH----HHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHH
Confidence 55554432 2222222234444444444332 12233333333
Q ss_pred HHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH
Q 038250 331 DGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK 410 (444)
Q Consensus 331 ~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~ 410 (444)
..|+. +++-.++ +..+...-...+......+++++..++... .+. .+.|..|+++++.+-+-.
T Consensus 340 ~~la~-~~nl~qv------l~El~eYatevD~~fvrkaIraig~~aik~--------e~~--~~cv~~lLell~~~~~yv 402 (734)
T KOG1061|consen 340 IELAN-DANLAQV------LAELKEYATEVDVDFVRKAVRAIGRLAIKA--------EQS--NDCVSILLELLETKVDYV 402 (734)
T ss_pred HHHhh-HhHHHHH------HHHHHHhhhhhCHHHHHHHHHHhhhhhhhh--------hhh--hhhHHHHHHHHhhcccce
Confidence 33332 1111111 112222222235556678889998888731 111 789999999999884445
Q ss_pred HHHHHHHHHHHHHhhccCCCCC
Q 038250 411 TKEHVSELLKLLNPHRARLECI 432 (444)
Q Consensus 411 ~k~~a~~ll~~l~~~~~~~~~~ 432 (444)
+++...-+-.+++++.+..+++
T Consensus 403 vqE~~vvi~dilRkyP~~~~~v 424 (734)
T KOG1061|consen 403 VQEAIVVIRDILRKYPNKYESV 424 (734)
T ss_pred eeehhHHHHhhhhcCCCchhhh
Confidence 5555555666667777665555
No 146
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.15 Score=53.26 Aligned_cols=200 Identities=18% Similarity=0.188 Sum_probs=117.0
Q ss_pred CchHHHHHHHHhhcccccccch-HHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 038250 168 GAVSVLAEAFETFSKTCLDENV-SVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVS 246 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~-~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s 246 (444)
+++|.|+++|....++. +.|. .....|-.+|. +.+. -.+..|+. -++|.+-.-+++++..-++.|+.+++.+..
T Consensus 319 ~v~P~Ll~~L~kqde~~-d~DdWnp~kAAg~CL~-l~A~--~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDD-DDDDWNPAKAAGVCLM-LFAQ--CVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred HhhHHHHHHHHhCCCCc-ccccCcHHHHHHHHHH-HHHH--Hhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 78899999996532221 1121 22233333333 1110 11112221 334444445567789999999999999964
Q ss_pred cchhhH-HHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHH
Q 038250 247 SDHRKV-NVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK 325 (444)
Q Consensus 247 ~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 325 (444)
+.+..+ ..+ ..+++|.++.++.++ +.-++..++|+|..++.+-. ...-....-.+.++.++.=|. +.+.+..+
T Consensus 394 gp~~~~Lt~i--V~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~-DePrva~N 467 (859)
T KOG1241|consen 394 GPEPDKLTPI--VIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLN-DEPRVASN 467 (859)
T ss_pred CCchhhhhHH--HhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhh-hCchHHHH
Confidence 443333 333 369999999999977 77888999999999998753 111222222344445544443 36788999
Q ss_pred HHHHHHHhcCChh------hHHHHhcCCCChHHHHHHHhhc-------ChhHHHHHHHHHHHHccccc
Q 038250 326 ALSVLDGLCSSDY------GRGDAYNNSLIFPVIVKKILRV-------SDLATEFAVSILWKLCKNEE 380 (444)
Q Consensus 326 a~~~L~~L~~~~~------~~~~i~~~~g~i~~Lv~ll~~~-------~~~~~~~a~~~L~~L~~~~~ 380 (444)
++|++.+|+..-. ++... .+ -..+.+++-|... ....+-.|..+|..+..+++
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~-~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDP-AT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCc-cc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 9999999984211 01111 11 2334444444332 22456778888888887754
No 147
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.76 E-value=0.19 Score=54.24 Aligned_cols=249 Identities=12% Similarity=0.143 Sum_probs=154.2
Q ss_pred hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh----cCC----HHHH
Q 038250 163 CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK----SGD----LSRR 234 (444)
Q Consensus 163 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~ 234 (444)
.+.+.||+..|+.+|.+..+. ..+.+.....+.+|. .+..-..||+.+.+.|+++.|++.|. .+. .++-
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~--~~~~~ll~~llkLL~-~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDF--SRGRELLQVLLKLLR-YCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccc--cCcHHHHHHHHHHHH-HHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 466789999999999765331 124667777888888 67777899999999999999999885 233 6777
Q ss_pred HHHHHHHHHHHhcchhhHHHhh------cc-------cccHHHHHHHhcCC---CChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 235 RNAVLVLREIVSSDHRKVNVLL------DI-------EGAIEPLFKLIKEP---ICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 235 ~~A~~~L~~L~s~~~~~~~~i~------~~-------~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
+....++..|.+... ...+. .. ..-+..|++.+.+. .++.+....++.|-+|+.++. +.
T Consensus 189 E~LL~IiE~ll~ea~--~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~---e~ 263 (802)
T PF13764_consen 189 EQLLEIIESLLSEAN--SSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNE---EK 263 (802)
T ss_pred HHHHHHHHHHHHHHh--hhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCH---HH
Confidence 888888877743222 21111 11 11266666666654 258889999999999999876 23
Q ss_pred hHHHHhcCcHHHHHHHhhcc-----ccch-HHHHHHHHHHhcCCh--hhHHHHhcCCCChHHHHHHHhhcCh--------
Q 038250 299 IQKFVDMGLVSLLLEMLVDA-----QRSL-CEKALSVLDGLCSSD--YGRGDAYNNSLIFPVIVKKILRVSD-------- 362 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~-----~~~~-~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~-------- 362 (444)
...+++. +.+.+++=.-+ +..+ .+..+.+...|-.+. ..-+..+.+.|++...++.|...-+
T Consensus 264 m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~ 341 (802)
T PF13764_consen 264 MDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSP 341 (802)
T ss_pred HHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCH
Confidence 3333332 33333322111 1112 233333333343322 2333444889999999998876322
Q ss_pred h--------HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 363 L--------ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 363 ~--------~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
. .-..++..|.-||.. ....+.++..++++.+-.|=+..++..+-..|-.+|..++...
T Consensus 342 eWk~~l~~psLp~iL~lL~GLa~g-----h~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 342 EWKEFLSRPSLPYILRLLRGLARG-----HEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhc-----CHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 1 225678888888884 2233444667777555555554434566667777777777643
No 148
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.26 Score=46.70 Aligned_cols=272 Identities=15% Similarity=0.105 Sum_probs=171.4
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHH--HHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVL--AEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS 215 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~L--v~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~ 215 (444)
+|.++...|.+.|..++.. +..-..+.+......+ +++-.. .+.-++...+..+..+.+.+++.-.....
T Consensus 140 eddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaak-------cndiaRvRVleLIieifSiSpesaneckk 211 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAK-------CNDIARVRVLELIIEIFSISPESANECKK 211 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhh-------hhhHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence 3777888889999999865 5556666666544433 222211 13456777777777777888888888888
Q ss_pred CCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCCC
Q 038250 216 ASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI-CPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 216 ~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL~~L~~~~~ 293 (444)
.|.+..|..=|+. .+.-++.+.......| ...+..++.+ .+.|.|..+..++.... +|-.+-.++.....+-.. .
T Consensus 212 SGLldlLeaElkGteDtLVianciElvteL-aeteHgrefl-aQeglIdlicnIIsGadsdPfekfralmgfgkffgk-e 288 (524)
T KOG4413|consen 212 SGLLDLLEAELKGTEDTLVIANCIELVTEL-AETEHGREFL-AQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-E 288 (524)
T ss_pred hhHHHHHHHHhcCCcceeehhhHHHHHHHH-HHHhhhhhhc-chhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-h
Confidence 9999999888876 4666777888888888 4566788888 55799999988887542 343333233322222222 1
Q ss_pred CCCchhHHHHhcC-------cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh---cC-h
Q 038250 294 ATEKPIQKFVDMG-------LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR---VS-D 362 (444)
Q Consensus 294 ~~~~~~~~i~~~g-------~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~---~~-~ 362 (444)
+...+++.. +|+..++++...|+..++.|+.+|..|-+..++...+ ...| -|..-.++.+ .+ .
T Consensus 289 ----aimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadll-lkTg-ppaaehllarafdqnah 362 (524)
T KOG4413|consen 289 ----AIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLL-LKTG-PPAAEHLLARAFDQNAH 362 (524)
T ss_pred ----HHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHH-hccC-ChHHHHHHHHHhccccc
Confidence 333333332 4455556666779999999999999999988888777 4444 3344344433 22 2
Q ss_pred hHHHHHHHHHHHHccccccc--------hHHHHHHHH-h----h---ChHHHHHHHHhcCCChHHHHHHHHHHHHH-Hhh
Q 038250 363 LATEFAVSILWKLCKNEERE--------EKTAFAEAL-Q----V---GAFQKLLLLLQVGCADKTKEHVSELLKLL-NPH 425 (444)
Q Consensus 363 ~~~~~a~~~L~~L~~~~~~~--------~~~~~~~~~-~----~---g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l-~~~ 425 (444)
--++.++.+|.+++....-. .++..+..+ . . .-+..++.+++.. .++++-.+-+.+..+ .+-
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP 441 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP 441 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence 34678888888887643211 011111111 1 1 2233455667666 888888888755544 444
Q ss_pred cc
Q 038250 426 RA 427 (444)
Q Consensus 426 ~~ 427 (444)
|.
T Consensus 442 Wa 443 (524)
T KOG4413|consen 442 WA 443 (524)
T ss_pred HH
Confidence 53
No 149
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.026 Score=57.85 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=133.0
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC------Chhhhh
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL------AGEGLT 211 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~------~~~~~~ 211 (444)
+|..++..|++.|-.|... -.--+. .....++++ +|+ +.+|+..|+.++. ...+ ..++-.
T Consensus 210 ~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~l---sD~----~e~VR~aAvqlv~-v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 210 QDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHL---SDD----YEDVRKAAVQLVS-VWGNRCPAPLERESEE 275 (823)
T ss_pred CCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHh---cch----HHHHHHHHHHHHH-HHHhcCCCcccchhhh
Confidence 4777888888888777642 211111 234456666 333 5778888877665 2221 111111
Q ss_pred hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh------H---------------------------------
Q 038250 212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK------V--------------------------------- 252 (444)
Q Consensus 212 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~------~--------------------------------- 252 (444)
.=....+...+...++..+..++-.|+.+|+.+-..+++. |
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 1112456777778888888888888888887763222211 1
Q ss_pred -----------HHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccc
Q 038250 253 -----------NVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRS 321 (444)
Q Consensus 253 -----------~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~ 321 (444)
..| ...|+-.++|+-|++. -.+++++|...+..|+.+.. .+.. .++..|++++.+....
T Consensus 356 dvpsee~d~~~~si-I~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP-------~FA~-~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 356 DVPSEEDDEEEESI-IPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSP-------GFAV-RALDFLVDMFNDEIEV 425 (823)
T ss_pred cCchhhcccccccc-ccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCC-------CcHH-HHHHHHHHHhccHHHH
Confidence 111 1234556677767665 57899999999999998754 1211 2689999999999999
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH
Q 038250 322 LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK 374 (444)
Q Consensus 322 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~ 374 (444)
++..|+.+|..++.+-..+ ..-++.+.+.|...+..+++..-..|.+
T Consensus 426 VRL~ai~aL~~Is~~l~i~------eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLAIR------EEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHheec------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999998864333 3446677787877788887766655544
No 150
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.69 E-value=0.34 Score=49.22 Aligned_cols=60 Identities=20% Similarity=0.144 Sum_probs=39.6
Q ss_pred cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250 360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~ 427 (444)
.+..++..|+.+|...+.+.. +.... .-+...|-+.+... ++.+|+.|+.+|+.+.-..+
T Consensus 499 EN~ivRsaAv~aLskf~ln~~---d~~~~----~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~~da 558 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNIS---DVVSP----QSVENALKRCLNDQ-DDEVRDRASFLLRNMRLSDA 558 (898)
T ss_pred hhhHHHHHHHHHHHHhccCcc---ccccH----HHHHHHHHHHhhcc-cHHHHHHHHHHHHhhhhhhh
Confidence 355677888888876665421 11222 23444555677666 89999999999999985444
No 151
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.68 E-value=0.072 Score=54.32 Aligned_cols=257 Identities=10% Similarity=0.032 Sum_probs=146.8
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc--cchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR--NKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+..++..|.+ ..+.++.+|+.....+++--.. --+.+.+.|.| |.+-| .+. ++++.-..+.++..
T Consensus 606 vStiL~~L~~----k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~l---ge~----ypEvLgsil~Ai~~ 672 (975)
T COG5181 606 VSTILKLLRS----KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENL---GED----YPEVLGSILKAICS 672 (975)
T ss_pred HHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhc---Ccc----cHHHHHHHHHHHHH
Confidence 3344444444 4788888898887777653221 12345566644 44444 222 68888888887775
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh---hHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR---KVNVLLDIEGAIEPLFKLIKEPICPTAT 278 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 278 (444)
+.+...-.+-+=--.|.+|.|..+|++.+..++.+....++.++...++ .|+-+ -+--.|+++|++- +.+.+
T Consensus 673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM----RIcfeLvd~Lks~-nKeiR 747 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM----RICFELVDSLKSW-NKEIR 747 (975)
T ss_pred HhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH----HHHHHHHHHHHHh-hHHHH
Confidence 5554432222212368999999999999999999999999999766654 23333 1234578888877 78999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh
Q 038250 279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~ 358 (444)
++|..++..++..- .-..++..|+.-|...+...+....-+++..+. .+.--.++|.|+.--.
T Consensus 748 R~A~~tfG~Is~ai----------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae-------~cgpfsVlP~lm~dY~ 810 (975)
T COG5181 748 RNATETFGCISRAI----------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAE-------YCGPFSVLPTLMSDYE 810 (975)
T ss_pred HhhhhhhhhHHhhc----------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHh-------hcCchhhHHHHHhccc
Confidence 99999888876542 122345556655554333332222222222211 1111123444433222
Q ss_pred hcChhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHH-HHhcCCChHHHHHHHHHHHHHH
Q 038250 359 RVSDLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLL-LLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 359 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~-ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
.....+|.-.+++++-+-.. .-++.. ---.+.+|++ .|... ++.-|+-|+.+++.++
T Consensus 811 TPe~nVQnGvLkam~fmFey-------ig~~s~dYvy~itPlleDAltDr-D~vhRqta~nvI~Hl~ 869 (975)
T COG5181 811 TPEANVQNGVLKAMCFMFEY-------IGQASLDYVYSITPLLEDALTDR-DPVHRQTAMNVIRHLV 869 (975)
T ss_pred CchhHHHHhHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHhhhccc-chHHHHHHHHHHHHHh
Confidence 33555666555555444332 111111 1233445555 55555 7888888888888776
No 152
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.66 E-value=0.0062 Score=47.95 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHHhcchhhHHHhh
Q 038250 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK--SGDLSRRRNAVLVLREIVSSDHRKVNVLL 256 (444)
Q Consensus 192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~L~s~~~~~~~~i~ 256 (444)
+...+++|..++..+..++..+.+.|+||.+++.-. ..+|-+++.|.++|++|+..+++|++.|+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344567777666778899999999999999999754 34899999999999999999999999883
No 153
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.00099 Score=63.83 Aligned_cols=60 Identities=28% Similarity=0.553 Sum_probs=46.6
Q ss_pred cccccccccCcCc-----eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHH
Q 038250 37 FRCPISLDLMKDP-----VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRM 96 (444)
Q Consensus 37 ~~Cpic~~~~~~P-----v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~ 96 (444)
-+||||++-+..| |++.|||-|-..||++|+.......||.|.-.-..+++.+-++++..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 5899999999887 45689999999999999953445789999766556666665555443
No 154
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.61 E-value=0.18 Score=47.66 Aligned_cols=226 Identities=15% Similarity=0.105 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhc-ccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYL-GSASSMRCMVWFLKS--GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL 265 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i-~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L 265 (444)
+-.+.-|+++|. ++....+.|..+ ++...-..++.+++. |..++|-+..-.++-| +.++...+-|-.....|.-|
T Consensus 163 ~lTrlfav~cl~-~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~l-Tf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 163 FLTRLFAVSCLS-NLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWIL-TFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHh-hhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHH
Confidence 445566778887 777777777654 456667788888876 4688999999999999 66777666664445678889
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---ccchHHHHH---HHHHH----hcC
Q 038250 266 FKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---QRSLCEKAL---SVLDG----LCS 335 (444)
Q Consensus 266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~---~~L~~----L~~ 335 (444)
+++++......+.+-+++.+.|++.-.. ......+.-.|-+.+-+++|... +++++...- ..|.+ |+.
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~p--K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSP--KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc--cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999877557888999999999987332 12455555566666667777643 444442222 22211 121
Q ss_pred Chh------------------------hHHHHh-cCCCChHHHHHHHhhcChh-HHHHHHHHHHHHccccccchHHHHHH
Q 038250 336 SDY------------------------GRGDAY-NNSLIFPVIVKKILRVSDL-ATEFAVSILWKLCKNEEREEKTAFAE 389 (444)
Q Consensus 336 ~~~------------------------~~~~i~-~~~g~i~~Lv~ll~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~ 389 (444)
.++ +-..+. -+...+..|.++++...+. .-..|+.=+..+.... ++...-
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~----PE~~~v 394 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS----PEINAV 394 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC----chHHHH
Confidence 111 111111 1123677888888776544 3467777788888754 445655
Q ss_pred HHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 390 ALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 390 ~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
..+-|+=..+++++..+ ++++|-.|...++.+-
T Consensus 395 l~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 66899999999999998 9999999999887764
No 155
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.60 E-value=0.12 Score=53.99 Aligned_cols=251 Identities=14% Similarity=0.071 Sum_probs=144.7
Q ss_pred hcccCChhHHHHHHHHHHHHhccCccc--chhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh
Q 038250 134 ACKSEDQAGCRDLVAKIKKWTKESDRN--KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT 211 (444)
Q Consensus 134 ~~~~~~~~~~~~Al~~L~~l~~~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~ 211 (444)
.+++.++.++.+|+..+..++.--... -+.+...|.| |...|. + +.+++.-..+.+|..++....-.+.
T Consensus 807 rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylg---e----eypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 807 RLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLG---E----EYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcC---c----ccHHHHHHHHHHHHHHHHhcccccc
Confidence 334457788888888888877532211 2356666754 555552 2 2688888777777754443322222
Q ss_pred hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh---hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250 212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR---KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT 288 (444)
Q Consensus 212 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 288 (444)
.==-.|.+|.|..+|++.+..++++....++.++...++ .|+-+ . +--.|+.+|+.. +.+.+++|..++..+
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM-R---IcfeLlelLkah-kK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM-R---ICFELLELLKAH-KKEIRRAAVNTFGYI 952 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH-H---HHHHHHHHHHHH-HHHHHHHHHhhhhHH
Confidence 111258899999999999999999999999999755553 33333 1 234577888877 688999999988887
Q ss_pred hcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHH
Q 038250 289 ITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFA 368 (444)
Q Consensus 289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a 368 (444)
+..- .-..++..|+.-|...+...+....-+++..+ +...-+ .++|.|+.--......+|.-.
T Consensus 953 akaI----------GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVa---E~c~pF----tVLPalmneYrtPe~nVQnGV 1015 (1172)
T KOG0213|consen 953 AKAI----------GPQDVLATLLNNLKVQERQNRVCTTVAIAIVA---ETCGPF----TVLPALMNEYRTPEANVQNGV 1015 (1172)
T ss_pred HHhc----------CHHHHHHHHHhcchHHHHHhchhhhhhhhhhh---hhcCch----hhhHHHHhhccCchhHHHHhH
Confidence 6542 12334555655554333322221222222111 111111 244554443333455667655
Q ss_pred HHHHHHHccccccchHHHHHHHH--hhChHHHHHH-HHhcCCChHHHHHHHHHHHHHHh
Q 038250 369 VSILWKLCKNEEREEKTAFAEAL--QVGAFQKLLL-LLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 369 ~~~L~~L~~~~~~~~~~~~~~~~--~~g~l~~Ll~-ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
+++|.-+-.. +-++. ---++.+|++ .|-.. +..-|+.|+.+++.++=
T Consensus 1016 Lkalsf~Fey--------igemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1016 LKALSFMFEY--------IGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHH--------HHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhc
Confidence 5555544432 22221 1223344444 55555 77888888888887763
No 156
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.82 Score=47.82 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=111.6
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
+.|+++|..+ |+.++..|+.-+.+|++.+|.|--. .-|.+-.+|.+.+ +--+.-+.+.....+..
T Consensus 184 prL~EkLeDp----Dp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSs------NNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 184 PRLVEKLEDP----DPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSS------NNWVLIKLLKLFAALTP 248 (877)
T ss_pred HHHHHhccCC----CchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccC------CCeehHHHHHHHhhccc
Confidence 4455555554 7888888888888888888876422 2366777774322 34455556665553333
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcCCHH-HHHHHHHHHH--HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSGDLS-RRRNAVLVLR--EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~A~~~L~--~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a 281 (444)
..+.-.. -.+++|..++.+.... +.-.++.++- +++++.++.-..+ .-.+..|-.++.+. ++-.+--+
T Consensus 249 lEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fieds-DqNLKYlg 319 (877)
T KOG1059|consen 249 LEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDS-DQNLKYLG 319 (877)
T ss_pred cCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcC-CccHHHHH
Confidence 3333222 3478888888765421 1111111111 3333332333333 12355555666666 78888888
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHH
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDA 343 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 343 (444)
+-+++-+...+. ..+.. --+.++++|.+.|+.++-.|+.+|..++. .++-.+|
T Consensus 320 Llam~KI~ktHp------~~Vqa--~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eI 372 (877)
T KOG1059|consen 320 LLAMSKILKTHP------KAVQA--HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEI 372 (877)
T ss_pred HHHHHHHhhhCH------HHHHH--hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHH
Confidence 888888876643 22222 25678899999999999999999999986 3344444
No 157
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.63 Score=48.63 Aligned_cols=251 Identities=12% Similarity=0.102 Sum_probs=155.9
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
..++..|+++ -+-.+.+|+..|..+.-.-|+. +. -.+|.|+.-|+. + |+.|+..|+.+++.+..
T Consensus 147 ~Dv~tLL~ss----kpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeD---p----Dp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 147 DDVFTLLNSS----KPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLED---P----DPSVVSAAVSVICELAR 210 (877)
T ss_pred HHHHHHHhcC----chHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccC---C----CchHHHHHHHHHHHHHh
Confidence 3455555554 5678888998888877554432 11 246888888842 2 79999999999996666
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLV 283 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 283 (444)
.++.|--.+ -|.+-.+|... |.=+-.......++|+-..|.... ..|++|..++.+..-....-.+..
T Consensus 211 KnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK------KLieplt~li~sT~AmSLlYECvN 279 (877)
T KOG1059|consen 211 KNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK------KLIEPITELMESTVAMSLLYECVN 279 (877)
T ss_pred hCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh------hhhhHHHHHHHhhHHHHHHHHHHH
Confidence 677665443 36777777543 333334556777777434444333 458999999986622233333333
Q ss_pred HHH--HHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhc
Q 038250 284 VVY--RTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 284 aL~--~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~ 360 (444)
++. +++.+.. +....+.. ++..|-.++.+.|+.++--++-+++.+.. |+..-.+. -..+++.|...
T Consensus 280 TVVa~s~s~g~~----d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~------kdlIlrcL~Dk 348 (877)
T KOG1059|consen 280 TVVAVSMSSGMS----DHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH------KDLILRCLDDK 348 (877)
T ss_pred HheeehhccCCC----CcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh------HHHHHHHhccC
Confidence 333 4444433 33333333 67778888888899999999999998875 33322222 23556777777
Q ss_pred ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH-HHhcCCChHHHHHHHHHHHHHHh
Q 038250 361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL-LLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~-ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
++.++-.|+..|..+.. .+++.++ +..|+. +...+++.---+....++.+++.
T Consensus 349 D~SIRlrALdLl~gmVs------kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 349 DESIRLRALDLLYGMVS------KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred CchhHHHHHHHHHHHhh------hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 88899999999988887 5666654 445555 44444233333444446666653
No 158
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0042 Score=66.64 Aligned_cols=75 Identities=32% Similarity=0.463 Sum_probs=68.4
Q ss_pred cCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 29 MELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
+..++|++|.-|+...+|.|||.++ .|++.||.-|.+++ ....+-|.||.++..+++.||..++..|+.|..+..
T Consensus 863 ~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhl--Ls~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 863 ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHL--LSDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHH--hcCCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 4556899999999999999999997 89999999999998 566788999999999999999999999999988764
No 159
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0012 Score=44.30 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=38.3
Q ss_pred cccccccccCcCceecCCcc-hhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTLSTGI-TYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~-~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||-+--.|-|...||| -.|..|-.+.+ ...+..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~-~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLK-KALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHH-HccCCcCcchhhHHH
Confidence 46999998888888889999 48999998877 347789999998763
No 160
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.38 E-value=0.063 Score=45.84 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=91.8
Q ss_pred hhHHHHhcCcHHHHHHHhhcccc------chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHH
Q 038250 298 PIQKFVDMGLVSLLLEMLVDAQR------SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAV 369 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~~~~------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~ 369 (444)
....+++.||+..|++++.++.. .+...++.++..|-.++-.--.. .+...|..++..+... +..+.+.|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~-l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDT-LSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhh-ccHHHHHHHHHHHccccccchHHHHHH
Confidence 35678999999999999987753 56677888888887776545555 5666778888877653 567889999
Q ss_pred HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
.+|-++..+++ ..-..+-++=-++.|+..|+.. +..++.+|.++++.+
T Consensus 82 aILEs~Vl~S~----~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL 129 (160)
T PF11841_consen 82 AILESIVLNSP----KLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINAL 129 (160)
T ss_pred HHHHHHHhCCH----HHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 99999999643 3344444667788999999997 999999999977765
No 161
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.37 E-value=0.22 Score=45.25 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhh-hhhcccCCcHH
Q 038250 142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEG-LTYLGSASSMR 220 (444)
Q Consensus 142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~-~~~i~~~g~i~ 220 (444)
.+-.|+..|+-++.+ ++.|..+.++-.---|-.+|...+.+ ....-++-.+++++..++..++.. -..+...++||
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~--r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKS--RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccC--CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 456677777778776 67899999988655566677432111 234667888999998777766643 44566899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcchh------hHHHhhcccccHHHHHH-HhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 221 CMVWFLKSGDLSRRRNAVLVLREIVSSDHR------KVNVLLDIEGAIEPLFK-LIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~------~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
..++.+..|+...|.-|..++..+...+.. ..+.+....-.+..+|. +.+.+ ++...+++.++..+|+.+..
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999999999544431 11222111233444443 33444 78999999999999987653
No 162
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0012 Score=59.74 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=40.0
Q ss_pred CCccccccccccCcCce----------ecCCcchhcHHHHHHHHHhcCC-CCCCCCCcccCCC
Q 038250 34 PNHFRCPISLDLMKDPV----------TLSTGITYDRENIEKWIHEDGN-ITCPVTNRVLTSF 85 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv----------~~~cg~~~c~~ci~~~~~~~~~-~~CP~c~~~~~~~ 85 (444)
-++-.|-+|.+-+..-+ .++|+|+|.-.||.-|. --|+ .+||-|++.+...
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc-ivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC-IVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe-eecCCCCCchHHHHhhHh
Confidence 34568999998776554 67999999999999998 4454 6899998766533
No 163
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.045 Score=56.20 Aligned_cols=185 Identities=14% Similarity=0.098 Sum_probs=114.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-------hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 038250 218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-------RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTIT 290 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 290 (444)
.....+.+|+.+...++..|+.+++......+ +.+... ..++..+.+.+++. +..++-.|+.+|..+-.
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~---D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK---DAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQ 310 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH---HHHHHHHHHHHhcC-ceeeeehHHHHhchHHH
Confidence 36777888888888899888777666532221 222222 24556666666654 33344444444432211
Q ss_pred CC---------------------------------------CC--------CCchhHHHHhcCcHHHHHHHhhccccchH
Q 038250 291 SA---------------------------------------SA--------TEKPIQKFVDMGLVSLLLEMLVDAQRSLC 323 (444)
Q Consensus 291 ~~---------------------------------------~~--------~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~ 323 (444)
-. +- .++.-..++..|+-.+++.-|.+.--+++
T Consensus 311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR 390 (823)
T KOG2259|consen 311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVR 390 (823)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHH
Confidence 10 00 01223345677888888888887778899
Q ss_pred HHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHH
Q 038250 324 EKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLL 403 (444)
Q Consensus 324 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll 403 (444)
++|+..+..|+....+-.. .++..||+++...-+.++..|+.+|..|+.+ -.+++.-++.+++.|
T Consensus 391 ~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~----------l~i~eeql~~il~~L 455 (823)
T KOG2259|consen 391 RAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH----------LAIREEQLRQILESL 455 (823)
T ss_pred HHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH----------heecHHHHHHHHHHH
Confidence 9999999999874332211 3567888877666778899999999999884 223445566666666
Q ss_pred hcCCChHHHHHHHHHHHHH
Q 038250 404 QVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 404 ~~~~~~~~k~~a~~ll~~l 422 (444)
... +..+|+....+|...
T Consensus 456 ~D~-s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 456 EDR-SVDVREALRELLKNA 473 (823)
T ss_pred Hhc-CHHHHHHHHHHHHhc
Confidence 666 666666655555443
No 164
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0025 Score=61.42 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=40.4
Q ss_pred CCccccccccccCcCce-----e---cCCcchhcHHHHHHHHHhcC-----CCCCCCCCcccC
Q 038250 34 PNHFRCPISLDLMKDPV-----T---LSTGITYDRENIEKWIHEDG-----NITCPVTNRVLT 83 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv-----~---~~cg~~~c~~ci~~~~~~~~-----~~~CP~c~~~~~ 83 (444)
..+..|.||++...++. . .+|.|.||..||..|-.... .+.||.|+....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 44689999999999887 3 47999999999999984333 478999986554
No 165
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.7 Score=48.82 Aligned_cols=251 Identities=8% Similarity=0.062 Sum_probs=147.4
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC
Q 038250 127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA 206 (444)
Q Consensus 127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~ 206 (444)
+...|...+++.+.-++--|+.+|..++.. +-.| +..|-+.++|+.. ++-++.+|+-++.......
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~-------~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHR-------DPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcC
Confidence 445666666656777788888888888743 1111 2446666777532 5778888877776555555
Q ss_pred hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC-------------C-
Q 038250 207 GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE-------------P- 272 (444)
Q Consensus 207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~-------------~- 272 (444)
++.-+. .++....+|.+.+..+...++..+..++..+++.-... . ..++-||..|++ +
T Consensus 174 P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f-r--~l~~~lV~iLk~l~~~~yspeydv~gi 245 (866)
T KOG1062|consen 174 PDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF-R--DLVPSLVKILKQLTNSGYSPEYDVHGI 245 (866)
T ss_pred chHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH-H--HHHHHHHHHHHHHhcCCCCCccCccCC
Confidence 554443 35566677777777777777777787877766655555 2 356666666651 1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCC-----------------CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 273 ICPTATKASLVVVYRTITSASAT-----------------EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 273 ~~~~~~~~a~~aL~~L~~~~~~~-----------------~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
.+|-.+...++.|+-|-.++.+. ++|....+=-.+|..++.+. .+..+++.|+.+|+....
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLL 323 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhc
Confidence 24666777777777776665421 11222211111233333222 356777888888887766
Q ss_pred ChhhHHHHhcCCCChH------------------HHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHH
Q 038250 336 SDYGRGDAYNNSLIFP------------------VIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQ 397 (444)
Q Consensus 336 ~~~~~~~i~~~~g~i~------------------~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~ 397 (444)
+.++..+- -++. .+++.|...+..++..|...+..|.. +.+++. .+.
T Consensus 324 n~d~NirY----vaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn------~~Nv~~-----mv~ 388 (866)
T KOG1062|consen 324 NRDNNIRY----VALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN------ESNVRV-----MVK 388 (866)
T ss_pred CCccceee----eehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc------cccHHH-----HHH
Confidence 55544332 1222 33445555566666777777766665 233333 345
Q ss_pred HHHHHHhcCCChHHHHHHHH
Q 038250 398 KLLLLLQVGCADKTKEHVSE 417 (444)
Q Consensus 398 ~Ll~ll~~~~~~~~k~~a~~ 417 (444)
.|+++|.+. ++..|...+.
T Consensus 389 eLl~fL~~~-d~~~k~~~as 407 (866)
T KOG1062|consen 389 ELLEFLESS-DEDFKADIAS 407 (866)
T ss_pred HHHHHHHhc-cHHHHHHHHH
Confidence 677777777 6666666555
No 166
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.26 E-value=0.007 Score=40.90 Aligned_cols=42 Identities=33% Similarity=0.598 Sum_probs=32.7
Q ss_pred ccccccc--cCcCceecCCc-----chhcHHHHHHHHHhcCCCCCCCCC
Q 038250 38 RCPISLD--LMKDPVTLSTG-----ITYDRENIEKWIHEDGNITCPVTN 79 (444)
Q Consensus 38 ~Cpic~~--~~~~Pv~~~cg-----~~~c~~ci~~~~~~~~~~~CP~c~ 79 (444)
.|-||.+ .-.+|...+|. +.+.+.|+.+|+...+..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4778886 44567777875 669999999999666678999985
No 167
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.25 E-value=0.0032 Score=59.09 Aligned_cols=52 Identities=19% Similarity=0.435 Sum_probs=40.5
Q ss_pred CCCccccccccccCcC--c-eec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 038250 33 TPNHFRCPISLDLMKD--P-VTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~--P-v~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l 87 (444)
-...|.|||+...|.. + |.+ +|||+|+..++.+.- ....||.|+.++...++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCE
Confidence 4556999999999954 2 333 899999999999852 34569999999987653
No 168
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.13 E-value=0.0064 Score=44.39 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=33.3
Q ss_pred ccccccccCc----Cceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 38 RCPISLDLMK----DPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 38 ~Cpic~~~~~----~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.||-|+.-|. -|+.- -|.|.|.-.||++|+ .....||.+++...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL--~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWL--DTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHH--hhCCCCCCCCceeE
Confidence 6777776442 24554 699999999999999 44678999988664
No 169
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.63 Score=51.21 Aligned_cols=221 Identities=11% Similarity=0.053 Sum_probs=130.5
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhccc--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGS--ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEP 264 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~ 264 (444)
+..+|.++-++|...+.. +.......+ ......|.+-+++.....+..++.+|..|-...+ +....+ .-.||-
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i---~k~I~E 742 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI---PKLIPE 742 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH---HHHHHH
Confidence 578999999999954444 333322221 2334455555555566677777777766644333 566666 245666
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHhcCCCC--CCchhHHHHhcCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCChhhH
Q 038250 265 LFKLIKEPICPTATKASLVVVYRTITSASA--TEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSSDYGR 340 (444)
Q Consensus 265 Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~--~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~ 340 (444)
++=.++.. +...++.|..+|.+|+..... .+..+ ..-.|...+.++..+ .......+.. |-.+..--...
T Consensus 743 vIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~ 816 (1176)
T KOG1248|consen 743 VILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEF 816 (1176)
T ss_pred HHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHH
Confidence 66556555 889999999999999831100 01112 111555666666544 2222222222 22222211222
Q ss_pred HHHhcCCCChHHHHHH----HhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHH
Q 038250 341 GDAYNNSLIFPVIVKK----ILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVS 416 (444)
Q Consensus 341 ~~i~~~~g~i~~Lv~l----l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~ 416 (444)
..+ .+.+.++.+++. |.+.+..+...|++.+..++.. .++....-...-.++.++.+++.. ....|.+..
T Consensus 817 ~~~-ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~----~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr 890 (1176)
T KOG1248|consen 817 KNI-LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK----FPEECLSPHLEELLPSLLALSHDH-KIKVRKKVR 890 (1176)
T ss_pred hcc-ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc----CCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 233 444455555544 4456888899999999998884 344555555566888888888777 788888888
Q ss_pred HHHHHHHh
Q 038250 417 ELLKLLNP 424 (444)
Q Consensus 417 ~ll~~l~~ 424 (444)
-++..|-+
T Consensus 891 ~LlekLir 898 (1176)
T KOG1248|consen 891 LLLEKLIR 898 (1176)
T ss_pred HHHHHHHH
Confidence 87776644
No 170
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.02 E-value=0.34 Score=44.80 Aligned_cols=188 Identities=18% Similarity=0.157 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh-------cCC-CCh---HHHHHHHHHHHHHhcCCCCCCc
Q 038250 229 GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-------KEP-ICP---TATKASLVVVYRTITSASATEK 297 (444)
Q Consensus 229 ~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll-------~~~-~~~---~~~~~a~~aL~~L~~~~~~~~~ 297 (444)
-+++.|+.|..-|..--...++..-.+=..-|.+..|++=+ ..+ .+. .-+.+|+..|-.++++.+
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpe---- 82 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPE---- 82 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TT----
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChH----
Confidence 36788888877777664444566666645667777776432 222 012 345677777889999987
Q ss_pred hhHHHHhcCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcCChhh-HHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250 298 PIQKFVDMGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCSSDYG-RGDAYNNSLIFPVIVKKILRVSDLATEFAVSI 371 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~ 371 (444)
.+..++++...-.|..+|... -+.++-.++++++.|++.++. -..++.+.+.+|..++.|..+++..+..|.-+
T Consensus 83 tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfI 162 (262)
T PF04078_consen 83 TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFI 162 (262)
T ss_dssp THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999988888888643 356788999999999984332 22335889999999999999999999999988
Q ss_pred HHHHccccccchHHHHHHHHh--------hChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 372 LWKLCKNEEREEKTAFAEALQ--------VGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 372 L~~L~~~~~~~~~~~~~~~~~--------~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+..+-.. +....-+++ ..++..++.-|...+++++=+...+...-++.+
T Consensus 163 lqKIL~d-----d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 163 LQKILLD-----DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHS-----HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHcc-----hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 8887552 333322221 445566666555555777666666655555444
No 171
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.31 Score=51.38 Aligned_cols=223 Identities=12% Similarity=0.023 Sum_probs=145.6
Q ss_pred cccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCC-HHHHHH
Q 038250 158 DRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGD-LSRRRN 236 (444)
Q Consensus 158 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~ 236 (444)
..-+...++.|+...|..+.... .......+..+|...++ .+..+. ...++++...++... ..-.-.
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q-------~e~akl~~~~aL~~~i~-f~~~~~----~~v~~~~~s~~~~d~~~~en~E 561 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQ-------FEEAKLKWYHALAGKID-FPGERS----YEVVKPLDSALHNDEKGLENFE 561 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHh-------chHHHHHHHHHHhhhcC-CCCCch----hhhhhhhcchhhhhHHHHHHHH
Confidence 44566788889999999988422 24455555555541111 111111 345666666665543 222345
Q ss_pred HHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh-cCcHHHHHHHh
Q 038250 237 AVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD-MGLVSLLLEML 315 (444)
Q Consensus 237 A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL 315 (444)
+..++.||++.++..++.| ...-+++.+-.++... ++..+++++..+.||..+.. -....+++ ...++.....+
T Consensus 562 ~L~altnLas~s~s~r~~i-~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~---~~e~si~e~~~~l~~w~~~~ 636 (748)
T KOG4151|consen 562 ALEALTNLASISESDRQKI-LKEKALGKIEELMTEE-NPALQRAALESIINLLWSPL---LYERSIVEYKDRLKLWNLNL 636 (748)
T ss_pred HHHHhhcccCcchhhHHHH-HHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHH---HHHHHhhccccCchHHHHHH
Confidence 8999999988888888887 4455666655555555 78999999999999998875 23445566 56777777777
Q ss_pred hccccchHHHHHHHHHHhcCChhhHHH-HhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhC
Q 038250 316 VDAQRSLCEKALSVLDGLCSSDYGRGD-AYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVG 394 (444)
Q Consensus 316 ~~~~~~~~~~a~~~L~~L~~~~~~~~~-i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g 394 (444)
...++...-++++++..+....++... +.........++.++.+.++.+|...+....++.. ...+....+....
T Consensus 637 e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~----~~~ei~~~~~~~~ 712 (748)
T KOG4151|consen 637 EVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE----ALFEIAEKIFETE 712 (748)
T ss_pred HhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH----HHHHHHHHhccch
Confidence 776777777888888877765655554 43445677888888888888888877777777554 2344444444555
Q ss_pred hHHHHHH
Q 038250 395 AFQKLLL 401 (444)
Q Consensus 395 ~l~~Ll~ 401 (444)
..+.+..
T Consensus 713 ~~~~l~~ 719 (748)
T KOG4151|consen 713 VMELLSG 719 (748)
T ss_pred HHHHHHH
Confidence 5554444
No 172
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.094 Score=53.98 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhc---ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLD---IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~---~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 292 (444)
...+|.|..+|.+.+....+-|..+|..++..+.+.-+.=.. -+-.||.+++..+++ ++..+..|+.++-......
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC
Confidence 456899999999999899999999999997554432221000 124789999999999 8999999999888776654
Q ss_pred CCCCchhHHHHh-cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250 293 SATEKPIQKFVD-MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSI 371 (444)
Q Consensus 293 ~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~ 371 (444)
+...++. -..++.|..+-.+.+++++++.+.+|..|...-..+..= -=.++|+.++...+..++.+.-.|+..
T Consensus 206 -----~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML~~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 206 -----TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYMLQRTQDVDENVALEACEF 279 (885)
T ss_pred -----cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHHHHccCcchhHHHHHHHH
Confidence 2444443 346666777777789999999999999887533222211 113556666665556677788888999
Q ss_pred HHHHccc
Q 038250 372 LWKLCKN 378 (444)
Q Consensus 372 L~~L~~~ 378 (444)
...+|..
T Consensus 280 wla~aeq 286 (885)
T KOG2023|consen 280 WLALAEQ 286 (885)
T ss_pred HHHHhcC
Confidence 8888874
No 173
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.93 E-value=0.36 Score=42.54 Aligned_cols=93 Identities=25% Similarity=0.295 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHH
Q 038250 230 DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVS 309 (444)
Q Consensus 230 ~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~ 309 (444)
++.+|.+++.+++.|+...+.. + ...++.+...|+++ ++.+++.|+.+|..|...+- .+. +...+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---v---e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~----ik~---k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---V---EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDM----IKV---KGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---H---HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCc----eee---hhhhhH
Confidence 4678999999999997555443 2 35589999999999 89999999999999987653 221 122347
Q ss_pred HHHHHhhccccchHHHHHHHHHHhcCC
Q 038250 310 LLLEMLVDAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 310 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 336 (444)
.++.+|.+.++.++..|...+..+...
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 888889999999999999999999874
No 174
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.90 E-value=0.22 Score=53.36 Aligned_cols=268 Identities=13% Similarity=0.078 Sum_probs=142.9
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250 126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL 205 (444)
Q Consensus 126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~ 205 (444)
.+++++.++ |.+.+.-|..-|..-...+..+-+.=-+...+..|+++|+. . +.+||..|+.+|+-+.+.
T Consensus 9 ~Llekmtss----DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~----ngEVQnlAVKClg~lvsK 77 (1233)
T KOG1824|consen 9 NLLEKMTSS----DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---K----NGEVQNLAVKCLGPLVSK 77 (1233)
T ss_pred HHHHHccCC----CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---c----CcHHHHHHHHHHHHHHhh
Confidence 677888776 77777777766655443332222222344688889999943 2 689999999999943322
Q ss_pred ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-h----hHHHhhcccccHHHHHHHhcCCC-ChHHHH
Q 038250 206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-R----KVNVLLDIEGAIEPLFKLIKEPI-CPTATK 279 (444)
Q Consensus 206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~----~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~ 279 (444)
-.+.+- ...+..|..-+-++....+.-+.-.|....+.-+ . +...+ - .-+.|.|.+-+.... ...++-
T Consensus 78 vke~~l----e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV-~-~~~t~~l~~~i~~qe~~sai~~ 151 (1233)
T KOG1824|consen 78 VKEDQL----ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATV-C-KRITPKLKQAISKQEDVSAIKC 151 (1233)
T ss_pred chHHHH----HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHH-H-HHHHHHHHHHhhhcccchhhHH
Confidence 222221 0112333333223434444333333332222222 1 11112 1 123444444443321 223555
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250 280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR 359 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~ 359 (444)
.++..|..+-+.-. ..-.. ...+.+..++.-|.+....++++|+.+|+.|+... ++... .+.+..|++-|..
T Consensus 152 e~lDil~d~lsr~g---~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly---~~li~~Ll~~L~~ 223 (1233)
T KOG1824|consen 152 EVLDILADVLSRFG---TLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLY---VELIEHLLKGLSN 223 (1233)
T ss_pred HHHHHHHHHHHhhc---ccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHH---HHHHHHHHhccCC
Confidence 55555554332211 01111 34566677777777778889999999999998632 22222 1345555554433
Q ss_pred c-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHH---hcCCChHHHHHHHHHHHHHHh
Q 038250 360 V-SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLL---QVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 360 ~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll---~~~~~~~~k~~a~~ll~~l~~ 424 (444)
. ++....--+..|..+|+..+. +..-.-...++.+.+.. +.+ +++.|+.+...+..|-+
T Consensus 224 ~~q~~~~rt~Iq~l~~i~r~ag~-----r~~~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 224 RTQMSATRTYIQCLAAICRQAGH-----RFGSHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLR 286 (1233)
T ss_pred CCchHHHHHHHHHHHHHHHHhcc-----hhhcccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHH
Confidence 2 334445555666677764321 22222355677777777 555 78999999987777643
No 175
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.89 E-value=0.43 Score=48.30 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=115.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCC
Q 038250 218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPI---CPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~ 294 (444)
....+..++.+++...|..|...|..+ +.+....+.+ ....++..|.++++++. +.+.....+.++..+-.+.-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d~~fa~ef-i~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSL-SLDPTFAEEF-IRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-cccHHHHHHH-HhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 356677888899988988899999999 6677666666 34688999999999883 24566666777766655432
Q ss_pred CCchhHHHHhcCcHHHHHHHhhc--cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHH
Q 038250 295 TEKPIQKFVDMGLVSLLLEMLVD--AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL 372 (444)
Q Consensus 295 ~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L 372 (444)
.-...+...+|.....+..- -+..+-..|+..|.++..++....+.+.+.--+..|+..++.++..++..|...+
T Consensus 161 ---vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 161 ---VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred ---eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 22233344455555555532 2566788999999999988876666668888999999999998888888888888
Q ss_pred HHHccccc
Q 038250 373 WKLCKNEE 380 (444)
Q Consensus 373 ~~L~~~~~ 380 (444)
-.+-...+
T Consensus 238 nal~~~a~ 245 (713)
T KOG2999|consen 238 NALFRKAP 245 (713)
T ss_pred HHHHhhCC
Confidence 88776654
No 176
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.75 E-value=0.0074 Score=40.15 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=21.2
Q ss_pred cccccccCcC--ceec--CCcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 39 CPISLDLMKD--PVTL--STGITYDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 39 Cpic~~~~~~--Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
||+|-+.+.. --.. +||+-.|+.|..+-. +.+...||.|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~-~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDIL-ENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHT-TSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHH-hccCCCCCCCCCCC
Confidence 7888887721 1122 689999999988877 45678999999865
No 177
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.73 E-value=0.067 Score=55.65 Aligned_cols=149 Identities=12% Similarity=0.151 Sum_probs=105.4
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhH---HHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKV---NVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~---~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
..+..+++.|++.++.++++|+.++..|+. .-..+ +.+ ...|.| |..-|... .+++.-..++||..+.....
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~-Vlktc~ee~~m-~~lGvv--LyEylgee-ypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAK-VLKTCGEEKLM-GHLGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHH-HHHhccHHHHH-HHhhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 345667778888999999999999999852 22222 223 223432 55666666 78998888888888875542
Q ss_pred CCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh----hHHHHhcCCCChHHHHHHHhhcChhHHHHHH
Q 038250 294 ATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY----GRGDAYNNSLIFPVIVKKILRVSDLATEFAV 369 (444)
Q Consensus 294 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~ 369 (444)
..+..==-.|.+|.|.-+|++.++.++++++.++..++.... .|+.+ ...-.|+++|.+.+...+..|.
T Consensus 874 ---m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM----RIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 874 ---MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM----RICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred ---ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 111111225789999999999999999999999999997443 34444 2344677878777888888888
Q ss_pred HHHHHHcc
Q 038250 370 SILWKLCK 377 (444)
Q Consensus 370 ~~L~~L~~ 377 (444)
.++.-++.
T Consensus 947 nTfG~Iak 954 (1172)
T KOG0213|consen 947 NTFGYIAK 954 (1172)
T ss_pred hhhhHHHH
Confidence 88877776
No 178
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.65 E-value=0.012 Score=39.95 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=25.8
Q ss_pred cccccccccCcCceec-CCcch--hcHHHHHHHHHhcCCCCCCCCCcc
Q 038250 37 FRCPISLDLMKDPVTL-STGIT--YDRENIEKWIHEDGNITCPVTNRV 81 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~-~cg~~--~c~~ci~~~~~~~~~~~CP~c~~~ 81 (444)
+.||++...+..|+-- .|.|. |....+.......+...||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6899999999999986 79986 665555554434566899999763
No 179
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.011 Score=57.07 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=38.9
Q ss_pred CCCCccccccccccCcC---ceecCCcchhcHHHHHHHHHhcCC--CCCCCCCc
Q 038250 32 TTPNHFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHEDGN--ITCPVTNR 80 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~~~~--~~CP~c~~ 80 (444)
.+..-|.|||-.+--.+ |+.+.|||..++..+.+.- ..|. +.||.|-.
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS-~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLS-KNGSQSFKCPYCPV 382 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHh-hCCCeeeeCCCCCc
Confidence 34445899998887663 8899999999999999977 5666 88999943
No 180
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.63 E-value=0.025 Score=54.95 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=43.9
Q ss_pred cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250 37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP 89 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~ 89 (444)
+.|.|.+++-++||.- ..||.|+++-|++|+ ..+..||+.+++++..++.+
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI--~e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYI--AETGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHH--HHcCCCCCCCCcCCHHHeee
Confidence 4799999999999987 589999999999999 56678999999988665443
No 181
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.62 E-value=2.2 Score=42.38 Aligned_cols=212 Identities=12% Similarity=0.102 Sum_probs=125.8
Q ss_pred HHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHH---HHHhhcCCChhhhhhccc-CCcHH
Q 038250 145 DLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILS---TLTLLFPLAGEGLTYLGS-ASSMR 220 (444)
Q Consensus 145 ~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~---~L~~~l~~~~~~~~~i~~-~g~i~ 220 (444)
+|++.|..+....+..-..+.+.||+..+++.|+.. +. .+.. .-...-...++.+..... .....
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E----------v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE----------VD-FALEENKNEEAGSGIPPEYKESSVDGYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH----------HH-HHHhcccccCCCCCCCCCcccccccccccCH
Confidence 466777777766666677888999999999999421 11 1111 000000111122222221 11100
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHh---c-chhhHHHhhcccccHHHHHHHhcCCC--ChHHHHHHHHHHHHHhcCCCC
Q 038250 221 CMVWFLKSGDLSRRRNAVLVLREIVS---S-DHRKVNVLLDIEGAIEPLFKLIKEPI--CPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s---~-~~~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~~a~~aL~~L~~~~~~ 294 (444)
.= ........++|..+.. . .+..|..+ +....+..|-.++++.. .+.+...|+..+.....++.
T Consensus 72 ~r--------~~llK~lLk~l~~~~~~~~~~~~~lrnl~-D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~neP- 141 (379)
T PF06025_consen 72 QR--------QQLLKSLLKFLSHAMQHSGGFGDRLRNLI-DSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEP- 141 (379)
T ss_pred HH--------HHHHHHHHHHHHHHhccCCCccccccccc-chhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCC-
Confidence 00 0111122233333322 1 22344444 32345566667777652 26788888888888888876
Q ss_pred CCchhHHHHhcCcHHHHHHHhh-cc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh-------h
Q 038250 295 TEKPIQKFVDMGLVSLLLEMLV-DA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD-------L 363 (444)
Q Consensus 295 ~~~~~~~i~~~g~v~~Lv~lL~-~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-------~ 363 (444)
..-..+.++|.++.+++.+. .+ +.++.-..-.+|..||-+..+.+.+ .+.+.++.+++++.+..- .
T Consensus 142 --T~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~-~~~~~l~~~f~if~s~~~~~~l~~~d 218 (379)
T PF06025_consen 142 --TSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKV-KSSNPLDKLFEIFTSPDYVKALRRRD 218 (379)
T ss_pred --chhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHH-HhcChHHHHHHHhCCHHHHHHhcccc
Confidence 46667788999999999998 44 5566666778899999999999999 888999999998875311 1
Q ss_pred HHHHHHHHHHHHccccc
Q 038250 364 ATEFAVSILWKLCKNEE 380 (444)
Q Consensus 364 ~~~~a~~~L~~L~~~~~ 380 (444)
....--..+-.|.+|.|
T Consensus 219 ~a~~lG~~~DEL~RH~p 235 (379)
T PF06025_consen 219 TASNLGNSFDELMRHHP 235 (379)
T ss_pred hHHHHHHHHHHHHccCH
Confidence 22233345566777655
No 182
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.8 Score=48.93 Aligned_cols=163 Identities=12% Similarity=0.148 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL 268 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l 268 (444)
...+..|+.-+...+...++- ....+.+++...+.+.++|...---|...+..+++. ..+ ++..+.+=
T Consensus 33 ~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-~lL-----avNti~kD 100 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL-ALL-----AVNTIQKD 100 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-HHH-----HHHHHHhh
Confidence 333444444333344444441 233566677666788999988888888886666532 222 35677777
Q ss_pred hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250 269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSL 348 (444)
Q Consensus 269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 348 (444)
++++ ++..+..|++++.-|= ...+.. .+++++.+++.++++.++..|+-++..|=.-+ ...+.+.|
T Consensus 101 l~d~-N~~iR~~AlR~ls~l~---------~~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g 166 (757)
T COG5096 101 LQDP-NEEIRGFALRTLSLLR---------VKELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELG 166 (757)
T ss_pred ccCC-CHHHHHHHHHHHHhcC---------hHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---Hhhhhccc
Confidence 8888 8999988877776652 223333 37899999999999999999999999886422 23336778
Q ss_pred ChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 349 IFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
.+..+..++...++.+..+|+.+|..+..
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 88899888888899999999999988875
No 183
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.51 E-value=0.8 Score=44.57 Aligned_cols=206 Identities=10% Similarity=0.089 Sum_probs=143.5
Q ss_pred hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-----HHHhhcc-cccHHHHHHHhcCCCChHHHHHHHHHH
Q 038250 212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-----VNVLLDI-EGAIEPLFKLIKEPICPTATKASLVVV 285 (444)
Q Consensus 212 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-----~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL 285 (444)
.+...|.+..|+..|..-+-+.+..++.+..++....... .+.+... ..++..|+.--+ +++..-.+-..|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence 3344688999999999999999999999999996543322 3344233 345555555444 456777778889
Q ss_pred HHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc-CChhhHHHHhcC--CCChHHHHHHHhhcCh
Q 038250 286 YRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC-SSDYGRGDAYNN--SLIFPVIVKKILRVSD 362 (444)
Q Consensus 286 ~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~--~g~i~~Lv~ll~~~~~ 362 (444)
+..+.++. ....+.+...+..+.+.+..++-++...|..++..|- .+..--.+.+.. ...+..+.++|.+++-
T Consensus 148 Rec~k~e~----l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY 223 (335)
T PF08569_consen 148 RECIKHES----LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY 223 (335)
T ss_dssp HHHTTSHH----HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred HHHHhhHH----HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence 99998876 7888888889999999999888899999999999754 455444444211 1245566677777788
Q ss_pred hHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250 363 LATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~ 427 (444)
..+..++..|..|-.... +-.....-+ +..-+..++.+|++. +..++-.|--+.+.+....+
T Consensus 224 vtkrqslkLL~ellldr~--n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 224 VTKRQSLKLLGELLLDRS--NFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHHHSGG--GHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS
T ss_pred EeehhhHHHHHHHHHchh--HHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCC
Confidence 889999999999886422 123333333 566677778888888 99999999999999987654
No 184
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.46 E-value=0.56 Score=49.53 Aligned_cols=203 Identities=10% Similarity=-0.008 Sum_probs=133.4
Q ss_pred ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHH-HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLR-EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
...-+...++.|+...|+.+...+..+.+..+..+|. .+ + .+..+ ....++++...+.....-...-.++.+
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i-~-f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKI-D-FPGER-----SYEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhc-C-CCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 3344567778999999999998888888888887777 33 1 11111 124566776666654222344557888
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcC-CCChHHHHHHHhhcChh
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNN-SLIFPVIVKKILRVSDL 363 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~ll~~~~~~ 363 (444)
+.||++.++ ..+..+...-+++.+-.++.+.++..+..++..+.||.-++.-....+++ ...++.....+......
T Consensus 566 ltnLas~s~---s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 566 LTNLASISE---SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred hhcccCcch---hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 999998876 46777888888888778888889999999999999999988877777666 45666666655544445
Q ss_pred HHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHH-HHHHHH
Q 038250 364 ATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSE-LLKLLN 423 (444)
Q Consensus 364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~-ll~~l~ 423 (444)
..-.+++++..|+... +.....+. -......++.++.+. +..++..-.. .++++.
T Consensus 643 ~~lA~a~a~a~I~sv~----~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 643 FELAGAGALAAITSVV----ENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFE 699 (748)
T ss_pred Hhhhccccccchhhcc----hhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHH
Confidence 5555666666555432 22222111 244556666677666 5555544444 555443
No 185
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.45 E-value=2 Score=39.26 Aligned_cols=210 Identities=9% Similarity=0.090 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHh-h---cccccc-cchHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFET-F---SKTCLD-ENVSVLEE 194 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~-~---~~~~~~-~~~~~~~~ 194 (444)
.+.+..++-.+.+. ..++.|+..|.+--+..+.-...+-. -|.+..|++-.-. + +....+ ....=...
T Consensus 25 ~dk~~~~i~~l~~~------p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcn 98 (293)
T KOG3036|consen 25 NDKAYQLILSLVSP------PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCN 98 (293)
T ss_pred ccchhhHHHHhhCC------chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHH
Confidence 34455666666553 46777888777765544444444433 3655555543211 1 111111 11223457
Q ss_pred HHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHH
Q 038250 195 ILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG-----DLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKL 268 (444)
Q Consensus 195 a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~l 268 (444)
|+..|. .++.+++.|..+.++..--.|-.+|... ....|-.+..+|+.|...++ +.-..+ ...++||..++.
T Consensus 99 aL~LlQ-cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fL-l~TeIVPlCLri 176 (293)
T KOG3036|consen 99 ALALLQ-CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFL-LTTEIVPLCLRI 176 (293)
T ss_pred HHHHHH-HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHH-HHhhhHHHHHHH
Confidence 788887 8888999999998887655566666532 46788889999999976555 333444 457999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh-c---C----cHHHHH-HHhhccccchHHHHHHHHHHhcCChhh
Q 038250 269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVD-M---G----LVSLLL-EMLVDAQRSLCEKALSVLDGLCSSDYG 339 (444)
Q Consensus 269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-~---g----~v~~Lv-~lL~~~~~~~~~~a~~~L~~L~~~~~~ 339 (444)
++.+ +...+..|...+..+-.++. .-..+-+ . - .+..++ ++.+.++..+.++++....+|+..+..
T Consensus 177 me~G-SelSKtvA~fIlqKIlldD~----GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 177 MESG-SELSKTVATFILQKILLDDV----GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred Hhcc-cHHHHHHHHHHHHHHhhccc----cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 9999 67788888887777766654 2222211 1 1 222222 333456888899999999999999988
Q ss_pred HHHH
Q 038250 340 RGDA 343 (444)
Q Consensus 340 ~~~i 343 (444)
|..+
T Consensus 252 r~aL 255 (293)
T KOG3036|consen 252 RAAL 255 (293)
T ss_pred HHHH
Confidence 8877
No 186
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.49 Score=49.73 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=73.7
Q ss_pred ccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250 186 DENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL 265 (444)
Q Consensus 186 ~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L 265 (444)
++++.++..|++.+. .+.. +... .-...+|...++++++.++..|+....++ . ....+.. ...|.++.|
T Consensus 97 d~np~iR~lAlrtm~-~l~v--~~i~----ey~~~Pl~~~l~d~~~yvRktaa~~vakl-~--~~~~~~~-~~~gl~~~L 165 (734)
T KOG1061|consen 97 DPNPLIRALALRTMG-CLRV--DKIT----EYLCDPLLKCLKDDDPYVRKTAAVCVAKL-F--DIDPDLV-EDSGLVDAL 165 (734)
T ss_pred CCCHHHHHHHhhcee-eEee--hHHH----HHHHHHHHHhccCCChhHHHHHHHHHHHh-h--cCChhhc-cccchhHHH
Confidence 347888888888777 3322 2111 23478888999999999999999999888 2 3344555 567999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 266 FKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
-+++.+. ++.+..+|+.+|..+...+.
T Consensus 166 ~~ll~D~-~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 166 KDLLSDS-NPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHhcCC-CchHHHHHHHHHHHHHHhCC
Confidence 9999977 89999999999999987764
No 187
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.012 Score=54.32 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=37.6
Q ss_pred cccccccc-CcCcee----cCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 38 RCPISLDL-MKDPVT----LSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 38 ~Cpic~~~-~~~Pv~----~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.||+|.-- +.+|-. -+|||+.|.+|+.+.| ..|...||.|+..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF-~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIF-SLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHH-hcCCCCCCcccchhhhc
Confidence 48888754 556621 2899999999999999 78999999999887654
No 188
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.42 E-value=0.14 Score=40.11 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=53.4
Q ss_pred cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250 259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334 (444)
Q Consensus 259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 334 (444)
.-++++++..+.+. +..++..|+.+|+|++... +..+.. ....+.|.+++.+.++.++..| ..|-+|-
T Consensus 26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~------~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVA------RGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 36799999999998 8999999999999999764 444443 4578888898888888876544 6666654
No 189
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.41 E-value=0.0047 Score=45.30 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=23.4
Q ss_pred ccccccccccCc-C---ceec----CCcchhcHHHHHHHHHhc--C-------CCCCCCCCcccC
Q 038250 36 HFRCPISLDLMK-D---PVTL----STGITYDRENIEKWIHED--G-------NITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~-~---Pv~~----~cg~~~c~~ci~~~~~~~--~-------~~~CP~c~~~~~ 83 (444)
+..|+||...+. + |... .|+.+|...|+.+||... . .+.||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998765 2 4443 589999999999999531 1 135999998764
No 190
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.39 E-value=0.24 Score=43.86 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCccc-chhHhhcCchHHHHHHHHhhccc--ccccchHHHHHHHHH
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRN-KRCIVDNGAVSVLAEAFETFSKT--CLDENVSVLEEILST 198 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~--~~~~~~~~~~~a~~~ 198 (444)
.....+++.|.+. . .....+..|+...+..+.. -+.+++.||+..|+++|...... ...++.+.+..++.+
T Consensus 66 ~~p~~~i~~L~~~----~--~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~C 139 (187)
T PF06371_consen 66 SSPEWYIKKLKSR----P--STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRC 139 (187)
T ss_dssp HHHHHHHHHHTTT--------HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcc----C--ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHH
Confidence 4455677777664 1 2225666676665554433 34677889999999999754211 112356788999999
Q ss_pred HHhhcCCChhhhh-hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250 199 LTLLFPLAGEGLT-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 199 L~~~l~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~ 245 (444)
|..++ ++..... .+...+++..|+..|.+.+..++..++.+|..+|
T Consensus 140 lkal~-n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 140 LKALM-NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT-SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHH-ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99444 4455444 4556899999999999999999999999998874
No 191
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.39 E-value=2.3 Score=46.11 Aligned_cols=249 Identities=13% Similarity=0.172 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhh-cccccccchHHHHHHHHHHHh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF-SKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~~~~~~~~a~~~L~~ 201 (444)
.+..++..|.+...-.........+..|...|..-+.||+.+.+.|+++.|+..|... .........++-+..+.++..
T Consensus 118 GL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ 197 (802)
T PF13764_consen 118 GLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIES 197 (802)
T ss_pred CHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHH
Confidence 3556666665532111123334444444444444588999999999999999988532 111000124566666666653
Q ss_pred hcCCChhhh-----hhcccCC----c---HHHHHHHHhcC----CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250 202 LFPLAGEGL-----TYLGSAS----S---MRCMVWFLKSG----DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL 265 (444)
Q Consensus 202 ~l~~~~~~~-----~~i~~~g----~---i~~Lv~lL~~~----~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L 265 (444)
+++...... ......| . +..|++.+.+. ++.+....+++|-+|+-++++..+.+. .-+.+.
T Consensus 198 ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv---~~F~p~ 274 (802)
T PF13764_consen 198 LLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV---EHFKPY 274 (802)
T ss_pred HHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH---HHHHHh
Confidence 333221111 1111111 3 55555555543 578888999999999877777666662 223443
Q ss_pred HHHhcC--CCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhccc----------------cchHH
Q 038250 266 FKLIKE--PICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVDAQ----------------RSLCE 324 (444)
Q Consensus 266 v~ll~~--~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~~~----------------~~~~~ 324 (444)
+++=+- ...++. +.-+..+..++.+-.++ ...+..+++.|++...++.|...- .....
T Consensus 275 l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 LDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred cChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 332111 101111 22355555555443221 246888999999999999986432 22345
Q ss_pred HHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHcc
Q 038250 325 KALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCK 377 (444)
Q Consensus 325 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~ 377 (444)
.++..|.-|+.+......+ ....+|+.+ ..|... ...+=..|-.+|-.|+.
T Consensus 354 ~iL~lL~GLa~gh~~tQ~~-~~~~~l~~l-H~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 354 YILRLLRGLARGHEPTQLL-IAEQLLPLL-HRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHhcCHHHHHH-HHhhHHHHH-HHhhcCCCccchHHHHHHHHHHHhc
Confidence 6778888888755544444 445566443 445432 22222334344444444
No 192
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.25 E-value=0.12 Score=52.84 Aligned_cols=148 Identities=12% Similarity=0.102 Sum_probs=104.0
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch---hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH---RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~---~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
-.+..++.+|++..+.++++|+.+...|+..-. +.+ .+ ...|. .|.+-|... .+++.-..+.|+..+.+...
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l-~klg~--iLyE~lge~-ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK-EL-AKLGN--ILYENLGED-YPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH-HH-HHHhH--HHHHhcCcc-cHHHHHHHHHHHHHHhhhhc
Confidence 346777788899999999999999888842111 111 12 12232 244555555 78998888888888866543
Q ss_pred CCCchhH-HHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh----hHHHHhcCCCChHHHHHHHhhcChhHHHHH
Q 038250 294 ATEKPIQ-KFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY----GRGDAYNNSLIFPVIVKKILRVSDLATEFA 368 (444)
Q Consensus 294 ~~~~~~~-~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a 368 (444)
.+. +==-.|.+|.|.-+|++.+..++++.+..+..++.... .|+.+ ...-.|+++|.+.+...+.+|
T Consensus 679 ----~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM----RIcfeLvd~Lks~nKeiRR~A 750 (975)
T COG5181 679 ----FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM----RICFELVDSLKSWNKEIRRNA 750 (975)
T ss_pred ----ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH----HHHHHHHHHHHHhhHHHHHhh
Confidence 111 11235899999999999999999999999999997443 23333 234467788888888888888
Q ss_pred HHHHHHHcc
Q 038250 369 VSILWKLCK 377 (444)
Q Consensus 369 ~~~L~~L~~ 377 (444)
..++.-++.
T Consensus 751 ~~tfG~Is~ 759 (975)
T COG5181 751 TETFGCISR 759 (975)
T ss_pred hhhhhhHHh
Confidence 888877776
No 193
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.21 E-value=0.47 Score=43.86 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh-hhhhhcccCCcH
Q 038250 141 AGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG-EGLTYLGSASSM 219 (444)
Q Consensus 141 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~-~~~~~i~~~g~i 219 (444)
...-.|+.-|+-+|.+ ++.|..+.++...--|--+|...+.. .+-..++-..+++++.++..++ +.-..+.+.+.+
T Consensus 65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~--r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEii 141 (262)
T PF04078_consen 65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKT--RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEII 141 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----S--HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccc--cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchH
Confidence 3556777888888875 77999999999877777888532111 2234567788888886666544 455667789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc-------cccHHHHHHH-hcCCCChHHHHHHHHHHHHHhcC
Q 038250 220 RCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI-------EGAIEPLFKL-IKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~-------~g~i~~Lv~l-l~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
|..+..+..|+.-.|.-|..++..+..++. .-+.+... ..++..+|.- .+++ ++...++..++...|+.+
T Consensus 142 plcLr~me~GselSKtvAtfIlqKIL~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 142 PLCLRIMEFGSELSKTVATFILQKILLDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHcchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHccC
Confidence 999999999999999999999999965444 22222121 2334444433 3355 799999999999999988
Q ss_pred CCCCCchhHHHH
Q 038250 292 ASATEKPIQKFV 303 (444)
Q Consensus 292 ~~~~~~~~~~i~ 303 (444)
.. .+..+.
T Consensus 220 pr----ar~aL~ 227 (262)
T PF04078_consen 220 PR----AREALR 227 (262)
T ss_dssp TT----HHHHHH
T ss_pred HH----HHHHHH
Confidence 75 555444
No 194
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.18 E-value=3.2 Score=40.01 Aligned_cols=195 Identities=16% Similarity=0.095 Sum_probs=109.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhh-cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC--CCCC
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLL-DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS--ASAT 295 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~ 295 (444)
+...+..|...+...|+.+...|.++...... -+.+. ...-++..+.+.++.+ ..+-+..|+.++.-++.. ..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g-- 120 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAG-- 120 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCC--
Confidence 44455555666788999999999888644332 22221 1224577788888888 445566666666666544 11
Q ss_pred CchhHHHHhcCcHHHHHHHhhcccc--chHHHHHHHHHHhcC---Ch-hhHHHHhcCCCChHHHH--HHHhhc-------
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQR--SLCEKALSVLDGLCS---SD-YGRGDAYNNSLIFPVIV--KKILRV------- 360 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~~--~~~~~a~~~L~~L~~---~~-~~~~~i~~~~g~i~~Lv--~ll~~~------- 360 (444)
.....+.+ ...|.|..++.+++. .++..++.+|+.++. .+ +.....+ ..+..+. ..+..+
T Consensus 121 -~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~---~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 121 -EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM---ESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred -ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH---HHHHHHHHHHhcCcCCCccccc
Confidence 14555555 478899999987644 344555656665543 11 1111110 0111110 111111
Q ss_pred ---ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250 361 ---SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 361 ---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~ 427 (444)
++.+...|+.+-.-|...-+ ...+. ..-...++.|..+|++. +..+|-.|-..+.++-+...
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~---~~~~~-~~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLP---DSKLE-DLLEEALPALSELLDSD-DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCC---HHHHH-HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence 12344445444334443322 21222 22355689999999988 89999999888888865544
No 195
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.17 E-value=0.018 Score=52.33 Aligned_cols=45 Identities=33% Similarity=0.522 Sum_probs=37.3
Q ss_pred cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250 37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRV 81 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~ 81 (444)
++||+......+|+.- .|||.|.|..|..++.......||+-+..
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 7999999999999876 79999999999999933335679995443
No 196
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.022 Score=51.31 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=39.8
Q ss_pred CCccccccccccCcCcee----cCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 038250 34 PNHFRCPISLDLMKDPVT----LSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~----~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l 87 (444)
...|.|||.+-.|..-+. .+|||.|....+.+.- ...|++|+..+...++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQEDDV 162 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCcccccCe
Confidence 455999999999987654 3899999988877643 4589999999987753
No 197
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.016 Score=57.08 Aligned_cols=51 Identities=16% Similarity=0.391 Sum_probs=38.5
Q ss_pred CCCccccccccccCc-----------------CceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 33 TPNHFRCPISLDLMK-----------------DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~-----------------~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
....--|+||..... +-+.++|.|.|.+.|+++|. +.-+-.||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WM-d~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWM-DTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHH-hhhcccCCccCCCCCC
Confidence 445568999986543 13445899999999999999 4445689999998753
No 198
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.13 E-value=1.3 Score=42.00 Aligned_cols=242 Identities=10% Similarity=0.003 Sum_probs=150.2
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhH-hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCI-VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i-~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
+.+++.+|...+ +.-.+.-|+..|..+... ++.|..+ .+.-.-..++.+++.+ -+ +.++|...+-++. +
T Consensus 150 fleyLgkl~Q~i---~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~-vg----~~qlQY~SL~~iw-~ 219 (432)
T COG5231 150 FLEYLGKLSQLI---DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNY-VG----VKQLQYNSLIIIW-I 219 (432)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhh-hh----hhhhHHHHHHHHH-H
Confidence 345555555554 555667777888888755 4455543 3444556777888643 22 4788888888887 7
Q ss_pred cCCChhhhhhccc-CCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCC--ChHH
Q 038250 203 FPLAGEGLTYLGS-ASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPI--CPTA 277 (444)
Q Consensus 203 l~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~ 277 (444)
++-+++.-+.|-+ .+.|..|+++.+.. ...+....+.++.|+++..+ .....+.. .|-+.+-|++|.... +++.
T Consensus 220 lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel 298 (432)
T COG5231 220 LTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEEL 298 (432)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHH
Confidence 8877776644433 46678888888765 45666778899999975332 33333323 355666677776441 2333
Q ss_pred HHHHHHHHHHH-------hcCC-----------------CCC---CchhHHHHhc--CcHHHHHHHhhccccc-hHHHHH
Q 038250 278 TKASLVVVYRT-------ITSA-----------------SAT---EKPIQKFVDM--GLVSLLLEMLVDAQRS-LCEKAL 327 (444)
Q Consensus 278 ~~~a~~aL~~L-------~~~~-----------------~~~---~~~~~~i~~~--g~v~~Lv~lL~~~~~~-~~~~a~ 327 (444)
+...-..=..| |..+ ..+ ..|...+.+. ..+..|.++|+...+. ...-|+
T Consensus 299 ~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc 378 (432)
T COG5231 299 VIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVAC 378 (432)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeH
Confidence 32222111111 1110 000 1355566543 4788899999876544 233344
Q ss_pred HHHHHhc-CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 328 SVLDGLC-SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 328 ~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
.=|..+. ..+|++.-+ ...|+=..++++|..++++++-.|+.++..+-.
T Consensus 379 ~Di~~~Vr~~PE~~~vl-~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 379 SDIFQLVRASPEINAVL-SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hhHHHHHHhCchHHHHH-HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 4455444 467777766 788999999999998999999999999877654
No 199
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.12 E-value=0.016 Score=54.30 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=36.0
Q ss_pred cccccccccCcC--c--eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 37 FRCPISLDLMKD--P--VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 37 ~~Cpic~~~~~~--P--v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
-.||+|.+.|.- - .-.+||+..|+.|..... +.-++.||.||....+.
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~ir-q~lngrcpacrr~y~de 66 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR-QNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHH-hhccCCChHhhhhcccc
Confidence 359999998862 1 223699999999987655 45578999999877654
No 200
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.014 Score=52.28 Aligned_cols=35 Identities=31% Similarity=0.561 Sum_probs=31.9
Q ss_pred CCCccccccccccCcCceecCCcchhcHHHHHHHH
Q 038250 33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWI 67 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~ 67 (444)
+.+.-.|.+|++.++|||+++-||.||+.||.+++
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 45556899999999999999999999999999987
No 201
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.07 E-value=0.24 Score=44.04 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=80.2
Q ss_pred hhccccchHHHHHHHHHHhcCChhhHHHHhc--C-------------CCChHHHHHHHhhc------ChhHHHHHHHHHH
Q 038250 315 LVDAQRSLCEKALSVLDGLCSSDYGRGDAYN--N-------------SLIFPVIVKKILRV------SDLATEFAVSILW 373 (444)
Q Consensus 315 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~-------------~g~i~~Lv~ll~~~------~~~~~~~a~~~L~ 373 (444)
+.+.+......++.+|+||+..+++...++. . ...+..|++.+..+ ......+.+.+|.
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 3345566788999999999999998886521 1 23677788877662 2234588999999
Q ss_pred HHccccccchHHHHHHHH--hhCh--HHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCC
Q 038250 374 KLCKNEEREEKTAFAEAL--QVGA--FQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL 429 (444)
Q Consensus 374 ~L~~~~~~~~~~~~~~~~--~~g~--l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~ 429 (444)
|+++. ++.+.-.+ +.+. +..|+.+++.. +..-|..++.++++++=..+.+
T Consensus 84 NlS~~-----~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 84 NLSQL-----PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred HhcCC-----HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH
Confidence 99995 56666666 4555 88999999888 8888888888999987544433
No 202
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.03 E-value=0.21 Score=44.24 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=80.0
Q ss_pred ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---------ccchHHHHHHHH
Q 038250 260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---------QRSLCEKALSVL 330 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---------~~~~~~~a~~~L 330 (444)
+....+++.+++.... . ..+.-|...-.... -.....|++.||+..|+++|..- +......++..|
T Consensus 66 ~~p~~~i~~L~~~~~~-~--~~L~~L~v~Lrt~~--~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl 140 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPST-S--KILKSLRVSLRTNP--ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL 140 (187)
T ss_dssp HHHHHHHHHHTTT--H-H--HHHHHHHHHHHHS---HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCcc-H--HHHHHHHHHhccCC--chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence 4556677777665221 1 22333332222221 12577899999999999999732 235778899999
Q ss_pred HHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHc
Q 038250 331 DGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLC 376 (444)
Q Consensus 331 ~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 376 (444)
..|.....|...++.+.+++..|+..|.+.+..++..++.+|..+|
T Consensus 141 kal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 141 KALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999888999999999998888999999999998887
No 203
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=3.5 Score=43.29 Aligned_cols=240 Identities=14% Similarity=0.115 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChh-hhhhcccCCcHH
Q 038250 142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGE-GLTYLGSASSMR 220 (444)
Q Consensus 142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~-~~~~i~~~g~i~ 220 (444)
++..|+-+|-.|-+.+| +.+-..+....++.+|... +..+...+...+..++...++ .+.++. -++.
T Consensus 164 vkqkaALclL~L~r~sp---Dl~~~~~W~~riv~LL~D~-------~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs 231 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSP---DLVNPGEWAQRIVHLLDDQ-------HMGVVTAATSLIEALVKKNPESYKTCLP--LAVS 231 (938)
T ss_pred HHHHHHHHHHHHHhcCc---cccChhhHHHHHHHHhCcc-------ccceeeehHHHHHHHHHcCCHHHhhhHH--HHHH
Confidence 45555555555555544 3344557888999999422 345555666666655555443 444332 1122
Q ss_pred HHHHHHhc-------------CCHHHHHHHHHHHHHHHh-cchhhHHHhhcccccHHHHHHHhcCC---CCh---HHHHH
Q 038250 221 CMVWFLKS-------------GDLSRRRNAVLVLREIVS-SDHRKVNVLLDIEGAIEPLFKLIKEP---ICP---TATKA 280 (444)
Q Consensus 221 ~Lv~lL~~-------------~~~~~~~~A~~~L~~L~s-~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~---~~~~~ 280 (444)
.|..+... .++=.+..++++|.+.-. .++..+..+ ..++..++...++. .++ -++.+
T Consensus 232 ~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l---~evl~~iLnk~~~~~~~k~vq~~na~na 308 (938)
T KOG1077|consen 232 RLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL---NEVLERILNKAQEPPKSKKVQHSNAKNA 308 (938)
T ss_pred HHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH---HHHHHHHHhccccCccccchHhhhhHHH
Confidence 22221111 234466677777777721 122344444 24455555555422 111 12233
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh-
Q 038250 281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR- 359 (444)
Q Consensus 281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~- 359 (444)
.+--..+|+.+-+ .....+++ ++..|-++|.+.+..++--|+..+..|+.+......+ ... ...++..|..
T Consensus 309 VLFeaI~l~~h~D---~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~dav-K~h--~d~Ii~sLkte 380 (938)
T KOG1077|consen 309 VLFEAISLAIHLD---SEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAV-KKH--QDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHcC---CcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHH-HHH--HHHHHHHhccc
Confidence 3333345665543 24555555 6889999999999999999999999999987777666 322 6677777773
Q ss_pred cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHH
Q 038250 360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVS 416 (444)
Q Consensus 360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~ 416 (444)
.+..+++.|+..|..+|.. ++... +|..|++.|.+. +..+|+.-+
T Consensus 381 rDvSirrravDLLY~mcD~------~Nak~-----IV~elLqYL~tA-d~sireeiv 425 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDV------SNAKQ-----IVAELLQYLETA-DYSIREEIV 425 (938)
T ss_pred cchHHHHHHHHHHHHHhch------hhHHH-----HHHHHHHHHhhc-chHHHHHHH
Confidence 5778899999999999983 33333 344566666665 555555433
No 204
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.01 E-value=1.3 Score=45.29 Aligned_cols=216 Identities=10% Similarity=0.000 Sum_probs=129.0
Q ss_pred cchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh----------------
Q 038250 187 ENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR---------------- 250 (444)
Q Consensus 187 ~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~---------------- 250 (444)
+|.+++..|..+|..++...-.--.-+.+.-....+.+.+++.++++..+|+..-..++...-+
T Consensus 233 ~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~ 312 (858)
T COG5215 233 NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNH 312 (858)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhc
Confidence 3789999999999877766555444555555566777888999999999988776555422111
Q ss_pred --hHHHhhcccccHHHHHHHhcCC------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccch
Q 038250 251 --KVNVLLDIEGAIEPLFKLIKEP------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSL 322 (444)
Q Consensus 251 --~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~ 322 (444)
.+..+ .+++|-|+.||... ++-....+|..+|--.+... ...|++. ++.-+=+-+++++-.-
T Consensus 313 ~fa~aav---~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~------gd~i~~p-Vl~FvEqni~~~~w~n 382 (858)
T COG5215 313 GFARAAV---ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK------GDKIMRP-VLGFVEQNIRSESWAN 382 (858)
T ss_pred chHHHHH---HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh------hhHhHHH-HHHHHHHhccCchhhh
Confidence 11112 46899999999752 12234455555555444332 1222322 2222222334456667
Q ss_pred HHHHHHHHHHhcCChh--hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHH
Q 038250 323 CEKALSVLDGLCSSDY--GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKL 399 (444)
Q Consensus 323 ~~~a~~~L~~L~~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~L 399 (444)
++.|+.+++.+-..+. .+..+ + ..++|.+..++...+--+++.++|++..|+.+ ..+++ ..|-++..
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~-V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--------va~~i~p~~Hl~~~ 452 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKI-V-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH--------VAMIISPCGHLVLE 452 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhh-H-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH--------HHHhcCccccccHH
Confidence 8999999998765433 23333 2 36788888877655667889999999999984 44444 34444444
Q ss_pred HHHHhcC--CChHHHHHHHHHHHHH
Q 038250 400 LLLLQVG--CADKTKEHVSELLKLL 422 (444)
Q Consensus 400 l~ll~~~--~~~~~k~~a~~ll~~l 422 (444)
+.....| ..+...-++.|..-.+
T Consensus 453 vsa~liGl~D~p~~~~ncsw~~~nl 477 (858)
T COG5215 453 VSASLIGLMDCPFRSINCSWRKENL 477 (858)
T ss_pred HHHHHhhhhccchHHhhhHHHHHhH
Confidence 3322222 1355555666633333
No 205
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.014 Score=42.23 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=32.5
Q ss_pred ccccccccCcC-ceec-CCcchhcHHHHHHHHHhcC-CCCCCCCCcccC
Q 038250 38 RCPISLDLMKD-PVTL-STGITYDRENIEKWIHEDG-NITCPVTNRVLT 83 (444)
Q Consensus 38 ~Cpic~~~~~~-Pv~~-~cg~~~c~~ci~~~~~~~~-~~~CP~c~~~~~ 83 (444)
.||-|.-.=.| |.+. .|.|.|-..||.+|+..+. ...||.||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45555544443 5555 6999999999999994333 368999998653
No 206
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.92 E-value=0.2 Score=44.64 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhHH-Hhhc--------------ccccHHHHHHHhcCC-----CChHHHHHHHHHHHHHhc
Q 038250 231 LSRRRNAVLVLREIVSSDHRKVN-VLLD--------------IEGAIEPLFKLIKEP-----ICPTATKASLVVVYRTIT 290 (444)
Q Consensus 231 ~~~~~~A~~~L~~L~s~~~~~~~-~i~~--------------~~g~i~~Lv~ll~~~-----~~~~~~~~a~~aL~~L~~ 290 (444)
......++.+|.||+ ..+..+. .+.. ....+..|+..+..+ ....-....+.++.|++.
T Consensus 9 ~~~adl~~MLLsNlT-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 9 SPLADLACMLLSNLT-RSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred cchHHHHHHHHHHhc-cchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344566788888884 4444444 2211 123677788877662 124567788999999999
Q ss_pred CCCCCCchhHHHHhc--Cc--HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCC--CChHHHHHHHh
Q 038250 291 SASATEKPIQKFVDM--GL--VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNS--LIFPVIVKKIL 358 (444)
Q Consensus 291 ~~~~~~~~~~~i~~~--g~--v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~--g~i~~Lv~ll~ 358 (444)
..+ .|..+.+. +. +..|+..+.+.+..-+.-++++|.|+|-..+.+..++.+. ..+|.|+--|.
T Consensus 88 ~~~----gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPE----GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHH----HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 987 88888864 34 5666666666666667899999999999888888884432 45555544443
No 207
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=94.89 E-value=0.55 Score=44.29 Aligned_cols=185 Identities=17% Similarity=0.105 Sum_probs=107.4
Q ss_pred HHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccC--CcHHHHHHHHhcC----CHHHHHHHHHHHHHH
Q 038250 171 SVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA--SSMRCMVWFLKSG----DLSRRRNAVLVLREI 244 (444)
Q Consensus 171 ~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~--g~i~~Lv~lL~~~----~~~~~~~A~~~L~~L 244 (444)
..+..++.+| ..+-+-.++-+++ ++..++..-..+... +....+..++... .+..+..+++++.|+
T Consensus 66 ~~~~~~~~~W-------p~~~~fP~lDLlR-l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~Nl 137 (268)
T PF08324_consen 66 ILLLKILLSW-------PPESRFPALDLLR-LAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANL 137 (268)
T ss_dssp HHHHHHHCCS--------CCC-HHHHHHHH-HHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCccchhHHhHHH-HHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Confidence 4455555445 2334566777777 555566554444332 2355555555443 577788899999999
Q ss_pred HhcchhhHHHhhcccc-cHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCCCCchh-HHHHhcCcHHHHHHHhhc--
Q 038250 245 VSSDHRKVNVLLDIEG-AIEPLFKLIKEPI---CPTATKASLVVVYRTITSASATEKPI-QKFVDMGLVSLLLEMLVD-- 317 (444)
Q Consensus 245 ~s~~~~~~~~i~~~~g-~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~-~~i~~~g~v~~Lv~lL~~-- 317 (444)
-.++..+..+....+ .|...+..+.... +..++..++..+.|++..-. .++ ..-.....+..+++.+..
T Consensus 138 -F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~---~~~~~~~~~~~ll~~i~~~~~~~~ 213 (268)
T PF08324_consen 138 -FSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLH---KNRSDEEWQSELLSSIIEVLSREE 213 (268)
T ss_dssp -TTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHH---HCTS-CCHHHHHHHHHHHHCHCCH
T ss_pred -hCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHhcccc
Confidence 556666766645444 4444444444432 46778888888889986632 011 111122245666664432
Q ss_pred cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh--cChhHHHHH
Q 038250 318 AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR--VSDLATEFA 368 (444)
Q Consensus 318 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a 368 (444)
.++++.-+++.+|++|...+...... ...-.+...+....+ ..+++++.+
T Consensus 214 ~d~Ea~~R~LvAlGtL~~~~~~~~~~-~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 214 SDEEALYRLLVALGTLLSSSDSAKQL-AKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp TSHHHHHHHHHHHHHHHCCSHHHHHH-CCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccChhHHHH-HHHcChHHHHHHHHhcccchHHHHHh
Confidence 48889999999999999877777777 443334444333332 244555443
No 208
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.87 E-value=0.37 Score=44.72 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHH
Q 038250 232 SRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLL 311 (444)
Q Consensus 232 ~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~L 311 (444)
.....|..+|..++=.++..+..++ ....+..|+++|+....+.++.+++.+|..+..+.. .|...+-+.||+..+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~-r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p---~N~r~FE~~~Gl~~v 181 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFH-REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSP---ENQRDFEELNGLSTV 181 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHh-hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcCh---HHHHHHHHhCCHHHH
Confidence 3456688899998878999999994 579999999999665468899999999998887765 699999999999999
Q ss_pred HHHhhcc--ccchHHHHHHHHHHhcC
Q 038250 312 LEMLVDA--QRSLCEKALSVLDGLCS 335 (444)
Q Consensus 312 v~lL~~~--~~~~~~~a~~~L~~L~~ 335 (444)
+.++++. +.+++-+++..|.-...
T Consensus 182 ~~llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 182 CSLLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHHccccccHHHhHHHHHHHHHHHc
Confidence 9999854 66677777777775544
No 209
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.047 Score=55.58 Aligned_cols=78 Identities=29% Similarity=0.379 Sum_probs=68.7
Q ss_pred CCcCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 27 GEMELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 27 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
.++..++|++|.-|+...+|+|||.++ .+-+..|+-|..++ -...+.|--|.++..++++||..+++.|..|....+
T Consensus 845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahl--lsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHL--LSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHH--hcCCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 445778999999999999999999995 78899999999988 455688999999999999999999999999987665
Q ss_pred c
Q 038250 106 S 106 (444)
Q Consensus 106 ~ 106 (444)
.
T Consensus 923 ~ 923 (929)
T COG5113 923 Q 923 (929)
T ss_pred c
Confidence 4
No 210
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.83 E-value=0.29 Score=45.43 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ 267 (444)
......|+.+|...+=.++..|..+.+..++..|+.+|.. ..+.++..+..+|..+.-.++.|...+ +..+|+..++.
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~F-E~~~Gl~~v~~ 183 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDF-EELNGLSTVCS 183 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHH-HHhCCHHHHHH
Confidence 3345667888887777899999999999999999999954 578899999999998888888999988 77899999999
Q ss_pred HhcCCC-ChHHHHHHHHHHHHHhcC
Q 038250 268 LIKEPI-CPTATKASLVVVYRTITS 291 (444)
Q Consensus 268 ll~~~~-~~~~~~~a~~aL~~L~~~ 291 (444)
++++.. +.+++-..+..|+-....
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHcc
Confidence 999762 345656666666644443
No 211
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=3.4 Score=43.93 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
..++..++...+..+.+.++.+...+++....++-.+. ...++++|+.+|++. .++|.-.+..+.
T Consensus 282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~kaLvrLLrs~--------~~vqyvvL~nIa 346 (968)
T KOG1060|consen 282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIAKALVRLLRSN--------REVQYVVLQNIA 346 (968)
T ss_pred CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHHHHHHHHHhcC--------CcchhhhHHHHH
Confidence 34566777776665555688899999999999985432 224689999999653 556665555555
Q ss_pred hhcCCChhhhhhcccCCcHHHHHHHH-hcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250 201 LLFPLAGEGLTYLGSASSMRCMVWFL-KSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT 278 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL-~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 278 (444)
.+.... +.. .-|.+-.+. .+. ...++..=..+|.+|+ ++.|...| ++-|-..+++. +.++.
T Consensus 347 ~~s~~~---~~l-----F~P~lKsFfv~ssDp~~vk~lKleiLs~La--~esni~~I------LrE~q~YI~s~-d~~fa 409 (968)
T KOG1060|consen 347 TISIKR---PTL-----FEPHLKSFFVRSSDPTQVKILKLEILSNLA--NESNISEI------LRELQTYIKSS-DRSFA 409 (968)
T ss_pred HHHhcc---hhh-----hhhhhhceEeecCCHHHHHHHHHHHHHHHh--hhccHHHH------HHHHHHHHhcC-chhHH
Confidence 211111 111 123333322 222 3444455566788884 33343333 45566677766 44566
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250 279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 336 (444)
..+..+|...+... .-+..-++.-|+.+|++.+..++..++.+|..|...
T Consensus 410 a~aV~AiGrCA~~~--------~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 410 AAAVKAIGRCASRI--------GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHHHHHHHHHHhh--------CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 66666666665432 224445888999999999999999999999988763
No 212
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.021 Score=54.38 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
+...+....|.||.+-.++.+-++|||..| |+.-. +....||+|++.+
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs---~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS---KHLPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHH---hhCCCCchhHHHH
Confidence 334444568999999999999999999977 66543 3455699998755
No 213
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.65 E-value=0.007 Score=62.63 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=35.4
Q ss_pred cccccccccCcCceec---CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 37 FRCPISLDLMKDPVTL---STGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
-.||+|..-+.|-... .|+|-||..||..|- +..-+||.|+..|...
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs--R~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS--RCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhh--hhcccCchhhhhhhee
Confidence 4778888777765433 588888888888887 5556899999887643
No 214
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.026 Score=54.02 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=33.7
Q ss_pred cccccccccCcCce---ec-CCcchhcHHHHHHHHHhcCC--CCCCCCCcccCCC
Q 038250 37 FRCPISLDLMKDPV---TL-STGITYDRENIEKWIHEDGN--ITCPVTNRVLTSF 85 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv---~~-~cg~~~c~~ci~~~~~~~~~--~~CP~c~~~~~~~ 85 (444)
-.|.||.+.+-.-- .+ .|||+|.-.|+.+|| +... ..||.|+-.+..+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwf-e~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWF-EGDPSNRGCPICQIKLQER 58 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHH-ccCCccCCCCceeecccce
Confidence 47999966554322 12 599999999999999 4332 5899998444433
No 215
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=4.7 Score=42.34 Aligned_cols=216 Identities=11% Similarity=0.072 Sum_probs=120.7
Q ss_pred HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhc
Q 038250 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIK 270 (444)
Q Consensus 192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~ 270 (444)
+..|+..|+ +...+++. +--.+....++++|...+..+...+...+-.|+...+ +++-.+...-+-+..++....
T Consensus 166 qkaALclL~-L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~ 241 (938)
T KOG1077|consen 166 QKAALCLLR-LFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVG 241 (938)
T ss_pred HHHHHHHHH-HHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcc
Confidence 456666666 66665542 2335778999999998888888888888888876554 455555222222222222211
Q ss_pred CC---------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--ccch-----HHHHHHHHHHhc
Q 038250 271 EP---------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QRSL-----CEKALSVLDGLC 334 (444)
Q Consensus 271 ~~---------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~-----~~~a~~~L~~L~ 334 (444)
.+ ..|=..-..+++|.+.=.-++ ...+.+..+ ++..++....+. ...+ +...+--.-+|+
T Consensus 242 t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D--~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 242 TSLQDYTYYFVPAPWLQVKLLRLLQIYPTPED--PSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred cchhhceeecCCChHHHHHHHHHHHhCCCCCC--chHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 11 124455556666666633332 223444333 344444444421 1122 222222222333
Q ss_pred CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHH
Q 038250 335 SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEH 414 (444)
Q Consensus 335 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~ 414 (444)
.+-+.-..++. .++..|-+++.......+.-|+..+..|+... ...++++.. ...++..|....+..+|++
T Consensus 318 ~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~------~s~davK~h-~d~Ii~sLkterDvSirrr 388 (938)
T KOG1077|consen 318 IHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSE------FSIDAVKKH-QDTIINSLKTERDVSIRRR 388 (938)
T ss_pred HHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhcc------chHHHHHHH-HHHHHHHhccccchHHHHH
Confidence 33332222212 35667777776666777888888888888753 233444333 6777788886667888888
Q ss_pred HHHHHHHHHh
Q 038250 415 VSELLKLLNP 424 (444)
Q Consensus 415 a~~ll~~l~~ 424 (444)
|+.||=.+..
T Consensus 389 avDLLY~mcD 398 (938)
T KOG1077|consen 389 AVDLLYAMCD 398 (938)
T ss_pred HHHHHHHHhc
Confidence 8887766653
No 216
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.41 E-value=0.13 Score=41.64 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=63.8
Q ss_pred hhhhhccc--CCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 208 EGLTYLGS--ASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 208 ~~~~~i~~--~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
+|-..+.+ ...+..|+.+|. +.++.+..-||.=|+.++...|..+..+ ...|+-..+..++.++ +++++..|+.+
T Consensus 32 ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii-~~lg~K~~vM~Lm~h~-d~eVr~eAL~a 109 (119)
T PF11698_consen 32 ENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNII-EKLGAKERVMELMNHE-DPEVRYEALLA 109 (119)
T ss_dssp HHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHH-HHHSHHHHHHHHTS-S-SHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHH-HhcChHHHHHHHhcCC-CHHHHHHHHHH
Confidence 34445543 346899999994 4477777888999999988889999888 7789999999999998 89999999999
Q ss_pred HHHHhcC
Q 038250 285 VYRTITS 291 (444)
Q Consensus 285 L~~L~~~ 291 (444)
+..+-.+
T Consensus 110 vQklm~~ 116 (119)
T PF11698_consen 110 VQKLMVN 116 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876543
No 217
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.40 E-value=3.9 Score=39.48 Aligned_cols=189 Identities=13% Similarity=0.084 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc---CchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN---GAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~---G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
+...+..+... ....+..|+..|..+..... ....+.. -.+..+.+.++ .+. .+-+..|+.++.
T Consensus 45 L~~~Id~l~eK----~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lk---kg~----~~E~~lA~~~l~ 111 (309)
T PF05004_consen 45 LKEAIDLLTEK----SSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLK---KGK----SEEQALAARALA 111 (309)
T ss_pred HHHHHHHHHhc----CHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhc---cCC----HHHHHHHHHHHH
Confidence 33445555443 46788999999998876533 3333332 23344444443 231 233445555544
Q ss_pred hhcCCC----hhhhhhcccCCcHHHHHHHHhcCC--HHHHHHHHHHHHHHH---hcchhhHHHhhcccccHHHH--HHHh
Q 038250 201 LLFPLA----GEGLTYLGSASSMRCMVWFLKSGD--LSRRRNAVLVLREIV---SSDHRKVNVLLDIEGAIEPL--FKLI 269 (444)
Q Consensus 201 ~~l~~~----~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~~L~---s~~~~~~~~i~~~~g~i~~L--v~ll 269 (444)
+++.. ++.. .+. ....|.|...+..++ ...|..++.+|.-++ ..+++..... -..+..+ ...+
T Consensus 112 -Ll~ltlg~g~~~~-ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~---~~~le~if~~~~~ 185 (309)
T PF05004_consen 112 -LLALTLGAGEDSE-EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL---MESLESIFLLSIL 185 (309)
T ss_pred -HHhhhcCCCccHH-HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH---HHHHHHHHHHHhc
Confidence 33322 2222 222 356788888887664 455555554555442 2222222211 0223322 1222
Q ss_pred cCC---------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250 270 KEP---------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334 (444)
Q Consensus 270 ~~~---------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 334 (444)
+.+ .++.+..+|+.+-.-|.+.-+ +....... ...++.|+.+|.+.+..++..|-.+|+.|-
T Consensus 186 ~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~--~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 186 KSDGNAPVVAAEDDAALVAAALSAWALLLTTLP--DSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CcCCCcccccCCCccHHHHHHHHHHHHHHhcCC--HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 221 124577777776666665543 10122222 347999999999999999988877777664
No 218
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.27 E-value=3.3 Score=41.11 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHH-hhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250 140 QAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFE-TFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS 218 (444)
Q Consensus 140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~ 218 (444)
+..-..|+..+..+..+.|..-..+.++|.++.+++.+. ..-. .+.++....-.++. .++.+....+.+.+.+.
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~----~s~e~l~~lP~~l~-AicLN~~Gl~~~~~~~~ 197 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL----PSSEVLTSLPNVLS-AICLNNRGLEKVKSSNP 197 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC----CcHHHHHHHHHHHh-HHhcCHHHHHHHHhcCh
Confidence 457788899999999999988889999999999999885 2211 24667766666777 67778999999999999
Q ss_pred HHHHHHHHhcCC-HH-HHH-HHH----HHHHHHHhcchhhHHHh
Q 038250 219 MRCMVWFLKSGD-LS-RRR-NAV----LVLREIVSSDHRKVNVL 255 (444)
Q Consensus 219 i~~Lv~lL~~~~-~~-~~~-~A~----~~L~~L~s~~~~~~~~i 255 (444)
++.+++++.+.. .. .+. ..+ ..+-.|..+.+..|..+
T Consensus 198 l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i 241 (379)
T PF06025_consen 198 LDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI 241 (379)
T ss_pred HHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence 999999887642 11 111 122 23444555566666655
No 219
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.23 E-value=0.024 Score=54.32 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=40.0
Q ss_pred ccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 38 RCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.|-||-+-=+|=.+-+|||-.|-.|+..|-.+.+..+||.||..+...
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 799999988887666999999999999998444467899999777643
No 220
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.20 E-value=0.052 Score=44.12 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=41.3
Q ss_pred CccccccccccCcCceec----CCcchhcHHHHHHHHHh-cCCCCCCCCCcccCCC
Q 038250 35 NHFRCPISLDLMKDPVTL----STGITYDRENIEKWIHE-DGNITCPVTNRVLTSF 85 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~----~cg~~~c~~ci~~~~~~-~~~~~CP~c~~~~~~~ 85 (444)
.-+.|.||++...|..-+ .||.+.|..|--..|+- .-...||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 457899999999988776 59999999999997742 3457899999877543
No 221
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.13 E-value=0.02 Score=60.70 Aligned_cols=47 Identities=26% Similarity=0.440 Sum_probs=39.3
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
+.|++|.+ ...++.+.|||.||..|+...+.......||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 888999999999999999998843344579999866543
No 222
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.031 Score=53.30 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred ccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 36 HFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
.-.|-||+.--+|=++++|-|. .|..|.+... -....||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHh
Confidence 4689999999999999999996 8999988754 445579999998753
No 223
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.05 E-value=0.27 Score=38.52 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=51.8
Q ss_pred CChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH--hhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 348 LIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL--QVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 348 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~--~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
-.+++++..+...+.+++..|+.+|.+++... ..+++ =..++..|.+++... ++.+|..|.-+-++++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~-------~~~~l~~f~~IF~~L~kl~~D~-d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA-------RGEILPYFNEIFDALCKLSADP-DENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhc
Confidence 45788888887788999999999999999852 22222 367778888888766 8888888877777764
No 224
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.00 E-value=0.12 Score=41.86 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=56.9
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250 261 AIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334 (444)
Q Consensus 261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 334 (444)
++..|+++|..+.++.....|+.=|..++.+.+ ..+..+-+.|+=..++++|.+++++++..|+.++..|-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p---~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP---NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G---GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHCh---hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 678899999665578888889999999998876 34555556899999999999999999999999988764
No 225
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.86 E-value=5.8 Score=39.86 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=103.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcch---hhHHHhhcccccHHHHHHHhcCCC----Ch--HHHHHHHHHHHHHhcCC
Q 038250 222 MVWFLKSGDLSRRRNAVLVLREIVSSDH---RKVNVLLDIEGAIEPLFKLIKEPI----CP--TATKASLVVVYRTITSA 292 (444)
Q Consensus 222 Lv~lL~~~~~~~~~~A~~~L~~L~s~~~---~~~~~i~~~~g~i~~Lv~ll~~~~----~~--~~~~~a~~aL~~L~~~~ 292 (444)
+..++...+++-|-.|......+...++ .+|..+-+ .=+.+.+-++|.+.. .| -.+..+...|...|+..
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 5566666678888888888888865544 45655633 456788888887541 22 35667777788888876
Q ss_pred CCCCchhHHHHhcCcHHHHHHHhhcc-ccc------hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhH
Q 038250 293 SATEKPIQKFVDMGLVSLLLEMLVDA-QRS------LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLA 364 (444)
Q Consensus 293 ~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~------~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~ 364 (444)
+ =.....|++ .||.|++++..+ +++ +.+.+-..|..++..+.+...+ ...|+++.+-++-... ....
T Consensus 95 E--lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~L-ia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 95 E--LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTL-IASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred h--hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHH-HhcCchHHHHHHHhCCCCchh
Confidence 5 223455665 699999999743 444 7899999999999999999998 7889999998744322 2223
Q ss_pred HHHHHHHHHHHcc
Q 038250 365 TEFAVSILWKLCK 377 (444)
Q Consensus 365 ~~~a~~~L~~L~~ 377 (444)
.+.|+.++.-+..
T Consensus 170 ~alal~Vlll~~~ 182 (698)
T KOG2611|consen 170 MALALKVLLLLVS 182 (698)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555544443
No 226
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.80 E-value=0.11 Score=31.21 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=26.0
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 261 AIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
++|.++++++++ +++++..|+.+|..++.+
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 479999999998 899999999999998753
No 227
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.75 E-value=0.33 Score=35.75 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc-cccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250 277 ATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD-AQRSLCEKALSVLDGLCSSDYGRGDAYNNSL 348 (444)
Q Consensus 277 ~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 348 (444)
-++.|+|++.++++.+. ....+-+.++|+.++++... +.-.++--|..+|..++...++.+.+ .+.|
T Consensus 3 ~lKaaLWaighIgss~~----G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L-~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPL----GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEIL-DELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChH----HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHH-HHcC
Confidence 36789999999999875 56666678999999999974 46789999999999999988888776 4433
No 228
>PRK14707 hypothetical protein; Provisional
Probab=93.61 E-value=16 Score=43.50 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=138.7
Q ss_pred ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250 120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL 199 (444)
Q Consensus 120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L 199 (444)
+...+..++..|+.= -+...+..|+..|..-..++++-++.+--.| |..+++-|..|- +..+...++..|
T Consensus 371 ~~q~~a~~lNalsKW---p~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWP------d~~~C~~aa~~l 440 (2710)
T PRK14707 371 EPQGVSSVLNALSKW---PDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWP------DLPICGQAVSAL 440 (2710)
T ss_pred chhHHHHHHhhhhcC---CCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCC------cchhHHHHHHHH
Confidence 344566666666654 2677899999999887777777777776666 577778887662 456778888888
Q ss_pred HhhcCCChhhhhhcccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHH
Q 038250 200 TLLFPLAGEGLTYLGSASSMRCMVWFLKS--GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTA 277 (444)
Q Consensus 200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 277 (444)
..-+..+.+-+..+---+ |...+.-|+. +++.+.+.|-.....| ..+.+.++.+ .-.++.-.|-.+-+-+..+..
T Consensus 441 A~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l-~~~~~l~~a~-~~q~~~~~L~aLSK~Pd~~~c 517 (2710)
T PRK14707 441 AGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARL-AHERRLRKAL-KPQEVVIALHSLSKWPDTPIC 517 (2710)
T ss_pred HHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHh-cccHHHHhhc-CHHHHHHHHHHhhcCCCcHHH
Confidence 877777777766554223 4445555544 3566666666666677 6778888888 555666666665555544666
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHH
Q 038250 278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKK 356 (444)
Q Consensus 278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~l 356 (444)
.+.+.+.-..+..... .... ...--+..++.-|+ .++....+.++..|..+..+......- .++-.|..+++.
T Consensus 518 ~~A~~~lA~rl~~~~~----l~~~-~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~Vs~llNa 591 (2710)
T PRK14707 518 AEAASALAERVVDELQ----LRKA-FDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQGVVIVLNA 591 (2710)
T ss_pred HHHHHHHHHHhccchh----hhhh-hhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhHHHHHHHh
Confidence 6767776666765443 2333 23223444555554 445556666666666654433333333 456677777777
Q ss_pred Hhh
Q 038250 357 ILR 359 (444)
Q Consensus 357 l~~ 359 (444)
|.+
T Consensus 592 LSK 594 (2710)
T PRK14707 592 LSK 594 (2710)
T ss_pred hcc
Confidence 765
No 229
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.33 E-value=0.043 Score=58.23 Aligned_cols=48 Identities=19% Similarity=0.469 Sum_probs=37.7
Q ss_pred ccccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 36 HFRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.-.|+||=.++. -|-.. .|.|-|.-.|+.+|++..+..+||.||..+.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 347999988876 23322 4889999999999997788899999997653
No 230
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.05 Score=51.40 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=38.7
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.|+-.||||----...|..+|+|.-|+.||.+++ -..+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHl--mN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHL--MNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHH--hcCCeeeEecceee
Confidence 4667999998887888888999999999999998 45566777765443
No 231
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.30 E-value=0.5 Score=40.70 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=95.6
Q ss_pred hHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch
Q 038250 170 VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH 249 (444)
Q Consensus 170 i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~ 249 (444)
+..++..|... . ...+++-.|+-++..++ +..+.... .-.-+.+-.++..++.+....+..+|..|--..+
T Consensus 5 l~~lL~~L~~~-~----~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 5 LDTLLTSLDML-R----QPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp CCHHHHHHHCT-T----TSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHhccc-C----CCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCH
Confidence 45566666421 0 13567777777777553 33333221 1112333334444455567778888888855667
Q ss_pred hhHHHhhcccccHHHHHHHhc--CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc-cccc-hHHH
Q 038250 250 RKVNVLLDIEGAIEPLFKLIK--EPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD-AQRS-LCEK 325 (444)
Q Consensus 250 ~~~~~i~~~~g~i~~Lv~ll~--~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~-~~~~ 325 (444)
+....+-...|+++.++.++. .. +......++.+|..-|.+. .+..++...+++.|-+++.. .+.. ++..
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~-----~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~ 149 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDK-----SCRTFISKNYVSWLKELYKNSKDDSEIRVL 149 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSH-----HHHHCCHHHCHHHHHHHTTTCC-HH-CHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccH-----HHHHHHHHHHHHHHHHHHccccchHHHHHH
Confidence 766666577899999999998 44 6788888888888877765 57777777789999999964 4444 7777
Q ss_pred HHHHHHH
Q 038250 326 ALSVLDG 332 (444)
Q Consensus 326 a~~~L~~ 332 (444)
|+-.|..
T Consensus 150 A~v~L~K 156 (157)
T PF11701_consen 150 AAVGLCK 156 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7766653
No 232
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=12 Score=41.29 Aligned_cols=221 Identities=12% Similarity=0.055 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++.+++.|.+.++..|..++..|++.+..++...| +. +++ .+|...++++. +.+ +...-..|+-+|.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~-Lad-~vi~svid~~~-p~e-----~~~aWHgacLaLA- 405 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PE-LAD-QVIGSVIDLFN-PAE-----DDSAWHGACLALA- 405 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HH-HHH-HHHHHHHHhcC-cCC-----chhHHHHHHHHHH-
Confidence 4466777788777777788999999999999998877 22 222 24455555552 111 2334445555555
Q ss_pred hcCCChhhhhhccc----CCcHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhcch--hhHHHhhcccccHHHHHH
Q 038250 202 LFPLAGEGLTYLGS----ASSMRCMVWFLKS--------GDLSRRRNAVLVLREIVSSDH--RKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 202 ~l~~~~~~~~~i~~----~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~L~s~~~--~~~~~i~~~~g~i~~Lv~ 267 (444)
.++. .-+.- ..++|.++.-|.- ....+|..|+-+++.++.... +.+..+ ......|+.
T Consensus 406 ELA~-----rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l---~~L~s~LL~ 477 (1133)
T KOG1943|consen 406 ELAL-----RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL---QSLASALLI 477 (1133)
T ss_pred HHHh-----cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH---HHHHHHHHH
Confidence 2221 11111 2445556555532 235688889999998853322 122222 123344432
Q ss_pred -HhcCCCChHHHHHHHHHHHHHhcCCCCC----------------------CchhHHHHh-cCcHHHHHHHhh-----cc
Q 038250 268 -LIKEPICPTATKASLVVVYRTITSASAT----------------------EKPIQKFVD-MGLVSLLLEMLV-----DA 318 (444)
Q Consensus 268 -ll~~~~~~~~~~~a~~aL~~L~~~~~~~----------------------~~~~~~i~~-~g~v~~Lv~lL~-----~~ 318 (444)
.+-+. +.-.+++|.+|+........|. ...+..+.+ .|...++++-|- +-
T Consensus 478 ~AlFDr-evncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW 556 (1133)
T KOG1943|consen 478 VALFDR-EVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW 556 (1133)
T ss_pred HHhcCc-hhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc
Confidence 34444 5778999999998765443321 012233333 466667776654 34
Q ss_pred ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 319 QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 319 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
+..+++.++.+|..|+.. ..+. ...+.++++++...+.+...+.
T Consensus 557 d~~irelaa~aL~~Ls~~---~pk~-~a~~~L~~lld~~ls~~~~~r~ 600 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLT---EPKY-LADYVLPPLLDSTLSKDASMRH 600 (1133)
T ss_pred cHHHHHHHHHHHHHHHHh---hHHh-hcccchhhhhhhhcCCChHHhh
Confidence 899999999999998752 2333 3457788888877666554443
No 233
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.18 E-value=0.68 Score=50.96 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=108.1
Q ss_pred hHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcc
Q 038250 170 VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSD 248 (444)
Q Consensus 170 i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~ 248 (444)
.|.++...+.++. ..++++|..|.-+|...+..+.+... ..+|.|...|. +.++.+|.+++.+++.|+-..
T Consensus 921 ~piv~e~c~n~~~---~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 921 APIVVEGCRNPGL---FSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHhcCCCc---CCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 3444455533222 23799999999999988877766543 45899999997 678999999999999997666
Q ss_pred hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHH
Q 038250 249 HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALS 328 (444)
Q Consensus 249 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~ 328 (444)
+...+.. -+.|...|.+. ++.+++.|..+|.+|-..+- |---|-++-...+|.++++.+..-|=.
T Consensus 993 pnlie~~------T~~Ly~rL~D~-~~~vRkta~lvlshLILndm--------iKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 993 PNLIEPW------TEHLYRRLRDE-SPSVRKTALLVLSHLILNDM--------IKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred ccccchh------hHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh--------hHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence 6554444 36788888888 89999999999999987652 223688999999999999999888875
Q ss_pred HHHHhcC
Q 038250 329 VLDGLCS 335 (444)
Q Consensus 329 ~L~~L~~ 335 (444)
....|+.
T Consensus 1058 FF~Els~ 1064 (1251)
T KOG0414|consen 1058 FFKELSS 1064 (1251)
T ss_pred HHHHhhh
Confidence 5555544
No 234
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.17 E-value=2.1 Score=41.72 Aligned_cols=186 Identities=10% Similarity=0.122 Sum_probs=127.5
Q ss_pred ChhHHHHHHHHHHHHhccCcccch-----hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKR-----CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYL 213 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~-----~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i 213 (444)
+-+.+..+......+.+.....+. .+... .-..|..++.-+. ++++.-.+-..|+ .+..++.--..+
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~------~~dial~~g~mlR-ec~k~e~l~~~i 160 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYE------NPDIALNCGDMLR-ECIKHESLAKII 160 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGG------STTTHHHHHHHHH-HHTTSHHHHHHH
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhc------CccccchHHHHHH-HHHhhHHHHHHH
Confidence 777788888888887776655543 22222 1233444443221 4667777778888 666777666666
Q ss_pred ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 214 GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 214 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
.....+..+......++=++...|..++..|...+... .+.+.. -..++.....+|.++ +.-.++.++..|..|-.+
T Consensus 161 L~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 161 LYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHHS
T ss_pred hCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHHc
Confidence 67788888999999999999999999999976666643 333311 123666777888888 888999999999999988
Q ss_pred CCCCCchhHH----HHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250 292 ASATEKPIQK----FVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 292 ~~~~~~~~~~----i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 337 (444)
.. |-.. +.+..-+..++.+|++.+..++-.|..+....+..+
T Consensus 240 r~----n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 240 RS----NFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp GG----GHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hh----HHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 76 5443 334567899999999999999999999988766544
No 235
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.10 E-value=0.048 Score=37.21 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=36.6
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE 86 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~ 86 (444)
+..|-.|...-...+.++|||..|+.|..- ..-..||.|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~----~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG----ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh----hhccCCCCCCCcccCCC
Confidence 456778888888899999999999999553 23346999999886543
No 236
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.99 E-value=1.4 Score=45.59 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=77.0
Q ss_pred cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250 228 SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL 307 (444)
Q Consensus 228 ~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~ 307 (444)
.++...+..|+..|...-...++..+ .+|..+++|.++. +..++..|...|-.+|.++. ++... +
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~---~~v~k-----v 97 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNP---EHVSK-----V 97 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T-----T-HHH-----H
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHH---HHHhH-----H
Confidence 46789999999999998777777554 4578999999988 89999999999999999853 35555 4
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh---hcChhHHHHHHHHHHH
Q 038250 308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL---RVSDLATEFAVSILWK 374 (444)
Q Consensus 308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~---~~~~~~~~~a~~~L~~ 374 (444)
++.|+++|...++.....+-.+|..|-. .+.+. .+..|..-+. ++++.+++.++..|..
T Consensus 98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~-~d~k~-------tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 98 ADVLVQLLQTDDPVELDAVKNSLMSLLK-QDPKG-------TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHH-H-HHH-------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHh-cCcHH-------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 6689999987765444444444444433 11222 2233444443 4566778888877743
No 237
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.095 Score=50.30 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=48.7
Q ss_pred cccccccccCcC------ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC--C---CCCCccHHHHHHHHHH
Q 038250 37 FRCPISLDLMKD------PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT--S---FEPIPNHTIRRMIQDW 100 (444)
Q Consensus 37 ~~Cpic~~~~~~------Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~--~---~~l~~n~~l~~~i~~~ 100 (444)
+.|-||.+-|.. |-.+.|||++|..|+...+ ..+...||.||.+.. . ..+..|..+...++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~-~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLL-GNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHh-cCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 578888888763 7777899999999999988 556678999998842 2 2467777777777665
No 238
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.97 E-value=0.24 Score=29.70 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~ 245 (444)
+|.+++++++.++++|..|+.+|..++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999995
No 239
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.92 E-value=5 Score=44.71 Aligned_cols=270 Identities=13% Similarity=0.103 Sum_probs=150.0
Q ss_pred HHHHHHhhccc-CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250 127 INCNITTACKS-EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL 205 (444)
Q Consensus 127 ll~~L~~~~~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~ 205 (444)
+++.+.+.++. ...+.+.+|+..|+.++..-.. ...---++|-++.++. ++ .++||..|+.+|..+++.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~---Ds----~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLM---DS----EADVRATALETLTELLAL 492 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhc---Cc----hHHHHHHHHHHHHHHHhh
Confidence 34444443321 2456788999999998864321 1222247899999994 33 588999999988866654
Q ss_pred Ch----hhhhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc------------------chhh-----------
Q 038250 206 AG----EGLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSS------------------DHRK----------- 251 (444)
Q Consensus 206 ~~----~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~------------------~~~~----------- 251 (444)
=. .+-..+ -.=.+|.|-.++.+. ...++..-|..|..||.. ++++
T Consensus 493 Vr~~~~~daniF-~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~ 571 (1431)
T KOG1240|consen 493 VRDIPPSDANIF-PEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTE 571 (1431)
T ss_pred ccCCCcccchhh-HhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchH
Confidence 22 222222 234577787777663 334444434444444210 0000
Q ss_pred HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHH
Q 038250 252 VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLD 331 (444)
Q Consensus 252 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 331 (444)
...+ . .++=...+.+|.++ .+-+++.-+..|.-||..-. +.. .+-=.++.|+..|.+.|..++-.-...|.
T Consensus 572 ~~~L-~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG-----k~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 572 LQAL-H-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG-----KEK-SNDVILSHLITFLNDKDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHH-H-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh-----hcc-cccchHHHHHHHhcCccHHHHHHHHhhcc
Confidence 1111 0 01112222334444 45566666666666664421 111 11125677777787777777766666666
Q ss_pred HhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHH
Q 038250 332 GLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKT 411 (444)
Q Consensus 332 ~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~ 411 (444)
.++..-.-| - ++++.+|.|..-|....+-+...|++.|..|+.. ...+...--..+.....+|... +.=+
T Consensus 643 gvsi~VG~r--s-~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~------~ll~K~~v~~i~~~v~PlL~hP-N~WI 712 (1431)
T KOG1240|consen 643 GVSIFVGWR--S-VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL------GLLRKPAVKDILQDVLPLLCHP-NLWI 712 (1431)
T ss_pred ceEEEEeee--e-HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh------cccchHHHHHHHHhhhhheeCc-hHHH
Confidence 555321111 1 2456778887777777788888999999888874 1233322233445555566665 7778
Q ss_pred HHHHHHHHHHHHhhc
Q 038250 412 KEHVSELLKLLNPHR 426 (444)
Q Consensus 412 k~~a~~ll~~l~~~~ 426 (444)
|..+..++-...+.+
T Consensus 713 R~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 713 RRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHHHHHhhh
Confidence 888887666665544
No 240
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.91 E-value=1.5 Score=37.72 Aligned_cols=144 Identities=11% Similarity=0.104 Sum_probs=93.9
Q ss_pred HHHHHHhcC-CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhH
Q 038250 263 EPLFKLIKE-PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGR 340 (444)
Q Consensus 263 ~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~ 340 (444)
..++.-|.. ...+.++..++-++..+- +. .+..+.+ -.-+.+-.++..++.+-...++.+|..|-- .++--
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~----~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DA----AREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HH----HHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH--HH----hHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 344444443 324567777777777763 21 3444333 233344444455555567778888887754 56666
Q ss_pred HHHhcCCCChHHHHHHHh--hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH-HHHHHHH
Q 038250 341 GDAYNNSLIFPVIVKKIL--RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK-TKEHVSE 417 (444)
Q Consensus 341 ~~i~~~~g~i~~Lv~ll~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~-~k~~a~~ 417 (444)
..++...|..+.++.++. +.+...+..++.+|..=|. .+..+..+...+++-|-+++..+.++. +|-.|+-
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 777788999999999888 5677888888888877666 556666666777899999996664566 6766665
Q ss_pred HH
Q 038250 418 LL 419 (444)
Q Consensus 418 ll 419 (444)
.|
T Consensus 153 ~L 154 (157)
T PF11701_consen 153 GL 154 (157)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 241
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.89 E-value=6.1 Score=34.66 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH-HHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI-EPLF 266 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i-~~Lv 266 (444)
|+.++..++.+++.++...+..- ...++.+...|+++++.+|..|+.+|.+|... + .+ ...|-+ ..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d----~i-k~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D----MI-KVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C----ce-eehhhhhHHHH
Confidence 36678888888885444443222 34588999999999999999999999999532 2 22 223444 7788
Q ss_pred HHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 267 KLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 267 ~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
.++.++ +++++..|...+..+...
T Consensus 70 ~~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCC-CHHHHHHHHHHHHHHHHh
Confidence 888777 899999999999999876
No 242
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.55 E-value=8.8 Score=38.72 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=83.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh-------------hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR-------------KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~-------------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
.+..|+.+|.+ +++...|+..+.-|.+..++ +|+.+ - .-.+|.|++-.+.. +.+.+.+-+.+
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~-F-~~~~p~L~~~~~~~-~~~~k~~yL~A 346 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF-F-TQVLPKLLEGFKEA-DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH-H-HHHHHHHHHHHhhc-ChhhHHHHHHH
Confidence 36677777755 67788999999999655342 35555 2 46788998888877 45588888999
Q ss_pred HHHHhcCCCCCCchhHHHHh-cCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250 285 VYRTITSASATEKPIQKFVD-MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 337 (444)
|.++..+-+ ....+-+ ...+|.|++-|..++..++..++.+|..+....
T Consensus 347 Ls~ll~~vP----~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 347 LSHLLKNVP----KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHhhCC----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 999998764 2222223 458899999998888899999999999988644
No 243
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.38 E-value=2.8 Score=45.40 Aligned_cols=136 Identities=21% Similarity=0.191 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh
Q 038250 190 SVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI 269 (444)
Q Consensus 190 ~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll 269 (444)
.++..++.++...++....--.- .+.+.+..++.-|.+....++..|+.+|++|++.. ++... .++|..|++=|
T Consensus 148 ai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~--~~~ly---~~li~~Ll~~L 221 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC--NRDLY---VELIEHLLKGL 221 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc--CHHHH---HHHHHHHHhcc
Confidence 35666666666333222111111 23566677777777788899999999999996543 33333 36778888888
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh---hccccchHHHHHHHHHHhcC
Q 038250 270 KEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML---VDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 270 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL---~~~~~~~~~~a~~~L~~L~~ 335 (444)
.....+...+.-..+|..++.... .+.----...+|.+.+.. ...+.+++|.++.+|..+..
T Consensus 222 ~~~~q~~~~rt~Iq~l~~i~r~ag----~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 222 SNRTQMSATRTYIQCLAAICRQAG----HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhc----chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 777667788888888888887643 222212235788888888 56688899999999987764
No 244
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.082 Score=53.90 Aligned_cols=59 Identities=29% Similarity=0.352 Sum_probs=39.4
Q ss_pred CCccccccccccCc----CceecCCcchhcHHHHHHHHHhcCCCCCCCCCccc-----CCCCCCccHHHHHHH
Q 038250 34 PNHFRCPISLDLMK----DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL-----TSFEPIPNHTIRRMI 97 (444)
Q Consensus 34 ~~~~~Cpic~~~~~----~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~-----~~~~l~~n~~l~~~i 97 (444)
.+.+.|+||...|. .||.+-||||.|+.|.+... +.+|| |...- +......|+++-+.+
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly----n~scp-~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY----NASCP-TKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh----hccCC-CCccccchhcChhhcchhHHHHHhh
Confidence 34579999977664 79999999999999999755 33577 32211 122344556655554
No 245
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=92.18 E-value=0.14 Score=45.83 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=44.9
Q ss_pred cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCC--CCcccCCCCCCccHHHHHH
Q 038250 37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPV--TNRVLTSFEPIPNHTIRRM 96 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~--c~~~~~~~~l~~n~~l~~~ 96 (444)
.+|||+.+...-|+.- .|+|.|.+.-|.++++-.-...||. |.+....+.+..++.+...
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R 252 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKR 252 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHH
Confidence 6999999999999875 7999999999999992223467887 7666655555555554443
No 246
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.04 E-value=15 Score=37.10 Aligned_cols=129 Identities=14% Similarity=0.147 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHHHhccCc---ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhh--hhc
Q 038250 139 DQAGCRDLVAKIKKWTKESD---RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGL--TYL 213 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~---~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~--~~i 213 (444)
+.+++..|+--..++++.++ .+|+.+.++=|.+.+=++|.+.+.+....+.-.+.-++++|. ..+..++-- ..+
T Consensus 24 ~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLa-cFC~~pElAsh~~~ 102 (698)
T KOG2611|consen 24 RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLA-CFCRVPELASHEEM 102 (698)
T ss_pred ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHH-HHhCChhhccCHHH
Confidence 44688999999999998765 568889999888999999975422111223334455666666 444444421 122
Q ss_pred ccCCcHHHHHHHHhcC-CHH------HHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC
Q 038250 214 GSASSMRCMVWFLKSG-DLS------RRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP 272 (444)
Q Consensus 214 ~~~g~i~~Lv~lL~~~-~~~------~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~ 272 (444)
+ +.||.|..++..+ +++ ..+.+-..|..+++.....+..| ..|+++.+.++-.-+
T Consensus 103 v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li--a~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 103 V--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI--ASGGLRVIAQMYELP 164 (698)
T ss_pred H--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH--hcCchHHHHHHHhCC
Confidence 2 6799999999765 332 66788899999965544555555 469999999887654
No 247
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.99 E-value=17 Score=37.58 Aligned_cols=156 Identities=10% Similarity=0.039 Sum_probs=97.1
Q ss_pred cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhh-hhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250 167 NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGL-TYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 167 ~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~ 245 (444)
++++|-|+++|....++....+=.+-..|.++|. +. .+++ ..|++. ++..+-+-+++++..-++.|+.+++.+.
T Consensus 320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq-lf---aq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm 394 (858)
T COG5215 320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ-LF---AQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHH-HH---HHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence 4689999999975221110112223444555554 21 2222 233322 3333334456778889999999999996
Q ss_pred hcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---ccccc
Q 038250 246 SSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---DAQRS 321 (444)
Q Consensus 246 s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~ 321 (444)
.+.. .....+ . +.++|.+..++.++ ..-++..++|+++.++.+- ...+--.|-++..+.... .+.+.
T Consensus 395 ~gp~~~~lT~~-V-~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~v------a~~i~p~~Hl~~~vsa~liGl~D~p~ 465 (858)
T COG5215 395 HGPCEDCLTKI-V-PQALPGIENEMSDS-CLWVKSTTAWCFGAIADHV------AMIISPCGHLVLEVSASLIGLMDCPF 465 (858)
T ss_pred cCccHHHHHhh-H-HhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHH------HHhcCccccccHHHHHHHhhhhccch
Confidence 4432 344455 3 68999999999877 6789999999999998652 233333555555554443 23667
Q ss_pred hHHHHHHHHHHhcCC
Q 038250 322 LCEKALSVLDGLCSS 336 (444)
Q Consensus 322 ~~~~a~~~L~~L~~~ 336 (444)
+..++.|...+|+.+
T Consensus 466 ~~~ncsw~~~nlv~h 480 (858)
T COG5215 466 RSINCSWRKENLVDH 480 (858)
T ss_pred HHhhhHHHHHhHHHh
Confidence 778888888888764
No 248
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.12 Score=39.83 Aligned_cols=27 Identities=19% Similarity=0.550 Sum_probs=23.2
Q ss_pred CCcchhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250 53 STGITYDRENIEKWIHEDGNITCPVTNRV 81 (444)
Q Consensus 53 ~cg~~~c~~ci~~~~~~~~~~~CP~c~~~ 81 (444)
.|.|.|...||.+|+ +....||.|.+.
T Consensus 80 ~CNHaFH~hCisrWl--ktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWL--KTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHH--hhcCcCCCcCcc
Confidence 699999999999999 556689999754
No 249
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.83 E-value=0.067 Score=55.70 Aligned_cols=66 Identities=15% Similarity=0.330 Sum_probs=47.3
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHHh-cCCCCCCCCCcccCCCCCCccHHHHHHHHH
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE-DGNITCPVTNRVLTSFEPIPNHTIRRMIQD 99 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~-~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~ 99 (444)
..++.||||...+.+|+.+.|-|.||+.|+...|.. .+...||+|+.........-...-.+++++
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence 446799999999999999999999999999986522 335789999866554433323333444443
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.67 E-value=0.085 Score=50.61 Aligned_cols=45 Identities=11% Similarity=0.330 Sum_probs=36.6
Q ss_pred ccccccccccCcC-c---eecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 36 HFRCPISLDLMKD-P---VTLSTGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 36 ~~~Cpic~~~~~~-P---v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
.+.|..|++.+-- | --++|.|.|.-.|.+.++-.++..+||.|++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4799999998652 2 2359999999999999995567789999984
No 251
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=11 Score=40.11 Aligned_cols=265 Identities=14% Similarity=0.107 Sum_probs=134.3
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250 126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL 205 (444)
Q Consensus 126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~ 205 (444)
.+..++.+-+++.+.-+..+|+.++..+...++ |...-.-+. |--++++. ...++-.|+++|......
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~pavs~---Lq~flssp-------~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELAPAVSV---LQLFLSSP-------KVALRFAAVRTLNKVAMK 312 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcchHHHH---HHHHhcCc-------HHHHHHHHHHHHHHHHHh
Confidence 455666665555577788999999998876543 222223344 44456433 466788888888744433
Q ss_pred Chh-----hh---hhccc---CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-chhhHHHhh------------ccccc
Q 038250 206 AGE-----GL---TYLGS---ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS-DHRKVNVLL------------DIEGA 261 (444)
Q Consensus 206 ~~~-----~~---~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~-~~~~~~~i~------------~~~g~ 261 (444)
++. |+ ..|.+ .-+-..+..+|+.|+......-..-+.+..+. +++.+..+. ...+.
T Consensus 313 ~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~ 392 (865)
T KOG1078|consen 313 HPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVM 392 (865)
T ss_pred CCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHH
Confidence 331 11 12221 12334555566666544443333333333211 222222220 11234
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHH
Q 038250 262 IEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRG 341 (444)
Q Consensus 262 i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 341 (444)
+..|..+|++....+.+++...++..+..... ..+.. ++..|...+.+. +...-+..+|..|-... -.
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~p---dsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~Eg--P~ 460 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENP---DSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKEG--PK 460 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCc---chhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhccC--CC
Confidence 45555566554445666666666666555332 12222 445555555433 22344555555543210 00
Q ss_pred HHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038250 342 DAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 421 (444)
Q Consensus 342 ~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~ 421 (444)
.. .-..-|..+.+.+.=.+..++..|+.+|..+....+ .. ..-+...|.+.+... ++.+|++|...|+.
T Consensus 461 a~-~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l-----~~sI~vllkRc~~D~-DdevRdrAtf~l~~ 529 (865)
T KOG1078|consen 461 AP-NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VL-----LPSILVLLKRCLNDS-DDEVRDRATFYLKN 529 (865)
T ss_pred CC-CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----Cc-----cccHHHHHHHHhcCc-hHHHHHHHHHHHHH
Confidence 01 111223333333322466677888888887774211 11 123444455556555 89999999999998
Q ss_pred HHhh
Q 038250 422 LNPH 425 (444)
Q Consensus 422 l~~~ 425 (444)
+...
T Consensus 530 l~~~ 533 (865)
T KOG1078|consen 530 LEEK 533 (865)
T ss_pred hhhh
Confidence 8843
No 252
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.51 E-value=0.15 Score=33.28 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=23.3
Q ss_pred cccccccCcCceecC---CcchhcHHHHHHHHHhcCCCCCCCC
Q 038250 39 CPISLDLMKDPVTLS---TGITYDRENIEKWIHEDGNITCPVT 78 (444)
Q Consensus 39 Cpic~~~~~~Pv~~~---cg~~~c~~ci~~~~~~~~~~~CP~c 78 (444)
|-+|.++...-+.-+ |+-.+...|+..||.......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667888877776654 8888999999999944444479987
No 253
>PRK14707 hypothetical protein; Provisional
Probab=91.48 E-value=35 Score=40.90 Aligned_cols=268 Identities=12% Similarity=0.049 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
..+.-++...+.-. +...++.|+..|..+...++..+..+ ..-+|..+++-+..|.+. + -.+.|+..|..
T Consensus 163 ~~~~lllNafSKw~---~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~-----~-~c~~aa~~la~ 232 (2710)
T PRK14707 163 QNISLALNAFSKWS---DNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDT-----P-DCGNAVSALAE 232 (2710)
T ss_pred ccHHHHHHHhhcCC---CCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCC-----h-hHHHHHHHHHH
Confidence 34556666666543 55678888888887776666666666 444577888888777332 3 34455566664
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhc-CC-HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKS-GD-LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK 279 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~-~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 279 (444)
.++.++.-+. -.+...+-..+..|+. .+ +.+...+..+-..+ ..+...++.+ ...++-..|-.+-+-+ +..+-.
T Consensus 233 ~l~~~~~l~~-~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl-~~~~~l~~al-~~q~vanalNalSKwp-d~~vc~ 308 (2710)
T PRK14707 233 RLADESRLRN-ELKPQELGNALNALSKWADTPVCAAAASALAERL-VDDPGLRKAL-DPINVTQALNALSKWA-DLPVCA 308 (2710)
T ss_pred HHcCcHHHHH-hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH-hhhHHHHHhc-CHHHHHHHHhhhhcCC-CchHHH
Confidence 5565544444 4445566666666654 34 44444444444455 5677788877 4334333444443444 344444
Q ss_pred HHHHHH-HHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccc-hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHH
Q 038250 280 ASLVVV-YRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRS-LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKK 356 (444)
Q Consensus 280 ~a~~aL-~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~-~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~l 356 (444)
.|+..| ..|..+.+ .+ .-.+.-.+..++.-|+.- +.. ..+.|..+-..|+.+++-+..+ +.-++..+++-
T Consensus 309 ~Aa~~la~rl~~d~~----l~-~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l--~~q~~a~~lNa 381 (2710)
T PRK14707 309 EAAIALAERLADDPE----LC-KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL--EPQGVSSVLNA 381 (2710)
T ss_pred HHHHHHHHHHhccHh----hh-hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc--chhHHHHHHhh
Confidence 444444 46665433 33 445555677777777743 444 4455555555777777666665 34566667676
Q ss_pred Hhhc-ChhHHHHHHHHHHH-HccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHH
Q 038250 357 ILRV-SDLATEFAVSILWK-LCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVS 416 (444)
Q Consensus 357 l~~~-~~~~~~~a~~~L~~-L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~ 416 (444)
+.+- +......|+..|.. +.. +......+..-.|.-++..|..=+...+...|+
T Consensus 382 lsKWp~~~~c~~aa~~LA~~l~~------d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa 437 (2710)
T PRK14707 382 LSKWPDTPVCAAAASALAEHVVD------DLELRKGLDPQGVSNALNALAKWPDLPICGQAV 437 (2710)
T ss_pred hhcCCCchHHHHHHHHHHHHhcc------ChhhhhhcchhhHHHHHHHhhcCCcchhHHHHH
Confidence 6653 33444444444443 433 334445555555566666555543434433333
No 254
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.44 E-value=2.8 Score=42.72 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=100.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcccc----chHHHHHHHHHHhcCChhh
Q 038250 264 PLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQR----SLCEKALSVLDGLCSSDYG 339 (444)
Q Consensus 264 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~~~~~ 339 (444)
.+.+++.++ +...+..|+..|..++.+.. ....+++..++..|.+++.+++. .+...++.++..|-.+.--
T Consensus 87 ~i~e~l~~~-~~~~~~~a~k~l~sls~d~~----fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 87 RIMEILTEG-NNISKMEALKELDSLSLDPT----FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHhhccccHH----HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 345566677 66677778899999988876 88999999999999999997744 4555566666655443321
Q ss_pred HHHHhcCCCChHHHHHHHhh--cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250 340 RGDAYNNSLIFPVIVKKILR--VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE 417 (444)
Q Consensus 340 ~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ 417 (444)
--.. +...+|..++.++.- -...+-..|+..|-++..+ +....+.+.++--+..|+..++.. +..+.-.|.+
T Consensus 162 sW~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~----s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aia 235 (713)
T KOG2999|consen 162 SWES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG----SDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIA 235 (713)
T ss_pred eeee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC----ChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHH
Confidence 1111 222334444444321 2344568899999998884 344455555788889999999988 7777777888
Q ss_pred HHHHH
Q 038250 418 LLKLL 422 (444)
Q Consensus 418 ll~~l 422 (444)
+++.+
T Consensus 236 l~nal 240 (713)
T KOG2999|consen 236 LLNAL 240 (713)
T ss_pred HHHHH
Confidence 77665
No 255
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.11 E-value=1 Score=33.18 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC
Q 038250 234 RRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG 306 (444)
Q Consensus 234 ~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g 306 (444)
...|.+++.+++ ..+.....+ ...++++.++++.++.....++-.|..+|.-++...+ -...+.+.|
T Consensus 4 lKaaLWaighIg-ss~~G~~lL-~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~----G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIG-SSPLGIQLL-DESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE----GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHh-cChHHHHHH-hhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH----HHHHHHHcC
Confidence 467999999995 566667777 5679999999999977567899999999999988765 555554444
No 256
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.03 E-value=0.94 Score=41.32 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhhcCCChhhhhhcccCCcH---HH----HHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhccccc
Q 038250 190 SVLEEILSTLTLLFPLAGEGLTYLGSASSM---RC----MVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGA 261 (444)
Q Consensus 190 ~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i---~~----Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~ 261 (444)
.-|+.|+.+|. -++..+.|...|...+-. +. |+++|.. ++.-.||.|+.+|.+|+..+......++.+.+.
T Consensus 139 SPqrlaLEaLc-KLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALC-KLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHH-HhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 46899999999 788888898887755543 33 3334433 478899999999999988888888888888999
Q ss_pred HHHHHHHhcCC
Q 038250 262 IEPLFKLIKEP 272 (444)
Q Consensus 262 i~~Lv~ll~~~ 272 (444)
|..|+..+++.
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 257
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.02 E-value=11 Score=37.13 Aligned_cols=240 Identities=15% Similarity=0.163 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+++..+++.|.+. .....+..++..|..-+.+ +.-|..+...|.+..+++.+... + +..+..-++.++..
T Consensus 21 Dev~ylld~l~~~---~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~--~----~d~~~~l~~a~i~~ 90 (361)
T PF07814_consen 21 DEVEYLLDGLESS---SSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDA--P----DDDILALATAAILY 90 (361)
T ss_pred HHHHHHHhhcccC---CCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccc--c----chHHHHHHHHHHHH
Confidence 5677778877733 2556788888888888865 67899999999999999999321 1 12244444444444
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCH-HHHHHHH-HHHHHHHhcchhhHHHhhcccccHHHHHHHhcC--------
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDL-SRRRNAV-LVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE-------- 271 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~-~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~-------- 271 (444)
.++.+..+-..+-+.+.+..++.+|..... ......- .-=.++ + ...+ +.+...-.++..
T Consensus 91 ~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~l-s---k~~~------~~~~~~~~~~~~~~~~~~~~ 160 (361)
T PF07814_consen 91 VLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNL-S---KVQQ------KSRSLCKELLSSGSSWKSPK 160 (361)
T ss_pred HHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhh-h---HHHH------HHHHHHHHHHhccccccccC
Confidence 666666665565567778888888872100 0000000 000001 0 0011 111111111100
Q ss_pred CCChHHHHHHHHHHHHHhcC-----------CCCCCchhHHHHhcCcHHHHHHHhhc----c------------ccchHH
Q 038250 272 PICPTATKASLVVVYRTITS-----------ASATEKPIQKFVDMGLVSLLLEMLVD----A------------QRSLCE 324 (444)
Q Consensus 272 ~~~~~~~~~a~~aL~~L~~~-----------~~~~~~~~~~i~~~g~v~~Lv~lL~~----~------------~~~~~~ 324 (444)
......+-.|+.+|-.++.. ..+-+-.+..+.+.|+++.+++++.+ . +-...+
T Consensus 161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 240 (361)
T PF07814_consen 161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE 240 (361)
T ss_pred CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence 11223344455555555310 00001246677788999999999862 1 112457
Q ss_pred HHHHHHHHhcCCh-hhHHHHh-cCCCChHHHHHHH-hhcC---hhHHHHHHHHHHHHcccccc
Q 038250 325 KALSVLDGLCSSD-YGRGDAY-NNSLIFPVIVKKI-LRVS---DLATEFAVSILWKLCKNEER 381 (444)
Q Consensus 325 ~a~~~L~~L~~~~-~~~~~i~-~~~g~i~~Lv~ll-~~~~---~~~~~~a~~~L~~L~~~~~~ 381 (444)
.++.+|.+-+... +++...+ ...+.++.+...+ .... ......++++|.|++.++|.
T Consensus 241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~ 303 (361)
T PF07814_consen 241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS 303 (361)
T ss_pred HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence 7888888877533 3444442 2233333333333 2222 23357899999999997654
No 258
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.74 E-value=3.5 Score=35.76 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=74.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
..+..+..+|++.+++.+..++..+..++..++ .+.+.. ..--+..|+.+|++...+.+++.++.+|..|...-...
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345667788889899999999999988853321 334412 22367888999998866788999999998886554311
Q ss_pred CchhHHHHhc---CcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 296 EKPIQKFVDM---GLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 296 ~~~~~~i~~~---g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
.+...++... +.++.+++++.+ ....+.++.+|..|-.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 2234444332 345555555543 4566777777776653
No 259
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.68 E-value=9.3 Score=38.55 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=116.5
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh-cCC---CChHHHHHHHHHHHHHhcCC
Q 038250 218 SMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-KEP---ICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 218 ~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll-~~~---~~~~~~~~a~~aL~~L~~~~ 292 (444)
.+..++.+..+. ++..+..++..|..|.-.-++ -..+ ...+..+...+ ... ..+...+...|....|....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~-~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD-DDDL---DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC-hhhH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 566677765544 577777888888888422111 1122 23444444444 111 13455666666666666543
Q ss_pred CCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hhh-------------HHHHhcCCCChHHHHHHHh
Q 038250 293 SATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DYG-------------RGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 293 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~-------------~~~i~~~~g~i~~Lv~ll~ 358 (444)
. .. ....+..|+++|.+ +.+...++..+..|..+ ++. ++++. .-.+|.|++...
T Consensus 266 ~---~~-----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~ 333 (415)
T PF12460_consen 266 H---PL-----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFK 333 (415)
T ss_pred C---ch-----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHh
Confidence 2 01 12256678888875 66778899999988886 331 22221 236777777777
Q ss_pred hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 359 RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 359 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
+.+...+...+.+|..+-.+.|. .+..---...+|.|++-|... +..++..+...|..+-.
T Consensus 334 ~~~~~~k~~yL~ALs~ll~~vP~----~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 334 EADDEIKSNYLTALSHLLKNVPK----SVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILE 394 (415)
T ss_pred hcChhhHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 66666888999999999997663 232222366889999999877 77888888887766654
No 260
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=90.61 E-value=0.34 Score=48.28 Aligned_cols=188 Identities=13% Similarity=-0.002 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhc-ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc----ch---hhHHHhhccc
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYL-GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS----DH---RKVNVLLDIE 259 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~----~~---~~~~~i~~~~ 259 (444)
+.-+...|++++. ..-.++..+.-+ ....+...+...|.+..-..|+.++|+++|++.. -+ ...+.+ . .
T Consensus 404 ~~lv~~aA~Ra~~-VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~-s-g 480 (728)
T KOG4535|consen 404 NRLVKAAASRALG-VYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF-S-G 480 (728)
T ss_pred HHHHHHHHHhhce-eEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH-H-H
Confidence 4446667777776 555566555432 2345566666777666778899999999999421 11 122222 1 1
Q ss_pred ccHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccchHHHHHHHHHHhcCC
Q 038250 260 GAIEPLFKLIKE--PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 260 g~i~~Lv~ll~~--~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~ 336 (444)
-.|..+++.-.. ..+..++.+|.++|.|+...-+.-.+.-......|.+..++.... .+...++-+++-+++||.++
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 234444444322 234678999999999997542100001112233444444444433 45778999999999999987
Q ss_pred hhhHHHH-hcCCCChHHHHHHHhh-cChhHHHHHHHHHHHHccc
Q 038250 337 DYGRGDA-YNNSLIFPVIVKKILR-VSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 337 ~~~~~~i-~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~ 378 (444)
+.-.-+- -....+.+.|..++.. .+-.++-.|+++|..-...
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 6542221 1223456677776665 3778888898888776653
No 261
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.58 E-value=25 Score=37.60 Aligned_cols=232 Identities=13% Similarity=0.098 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHH
Q 038250 142 GCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRC 221 (444)
Q Consensus 142 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~ 221 (444)
.+.--++-++..+..++.- ++-.|..+..+|.+. ++.+.-+|...|. .++.++..-.. +...
T Consensus 222 LqlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~st-------ssaV~fEaa~tlv-~lS~~p~alk~-----Aa~~ 283 (948)
T KOG1058|consen 222 LQLVIVELIRKVCLANPAE-----KARYIRCIYNLLSST-------SSAVIFEAAGTLV-TLSNDPTALKA-----AAST 283 (948)
T ss_pred HHHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcC-------CchhhhhhcceEE-EccCCHHHHHH-----HHHH
Confidence 3444445555555544432 233566677777432 3556666666676 56666543322 1334
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhH
Q 038250 222 MVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQ 300 (444)
Q Consensus 222 Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 300 (444)
+++++... +..++--...-|..+. ..+...+ .|.+--.+.+|..+ +.++++.++.....|+.+. |..
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l~---~~~~~il---~~l~mDvLrvLss~-dldvr~Ktldi~ldLvssr-----Nve 351 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL---QGLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSR-----NVE 351 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH---HHHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhc-----cHH
Confidence 44444322 2333333344444442 2333334 36666777888888 7889999998888888776 455
Q ss_pred HHHhcCcHHHHHH-Hhhcc------ccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHH
Q 038250 301 KFVDMGLVSLLLE-MLVDA------QRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL 372 (444)
Q Consensus 301 ~i~~~g~v~~Lv~-lL~~~------~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L 372 (444)
.++. .|-+ +.... +..-+..-+.+|...+. .++.- +.+|+.|++.+...++ +.|..+|
T Consensus 352 div~-----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a------atvV~~ll~fisD~N~---~aas~vl 417 (948)
T KOG1058|consen 352 DIVQ-----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA------ATVVSLLLDFISDSNE---AAASDVL 417 (948)
T ss_pred HHHH-----HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH------HHHHHHHHHHhccCCH---HHHHHHH
Confidence 5443 1111 11111 22345666677776654 23322 3457788887754443 3344444
Q ss_pred HHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 373 WKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 373 ~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
.-+.. .-..-..+++..+..|++-+..-.+.++-+.|.|++.-..
T Consensus 418 ~FvrE------~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 418 MFVRE------AIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HHHHH------HHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 33322 1111123356677777775544336677788888765443
No 262
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=90.45 E-value=24 Score=36.54 Aligned_cols=143 Identities=8% Similarity=0.025 Sum_probs=71.2
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250 126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL 205 (444)
Q Consensus 126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~ 205 (444)
.+.++|.+-+++.-.-+..++++.+..++.++- -..+.+ -.|..|-.+|++. ....+-.|+++|. -++.
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~-------rv~~rFsA~Riln-~lam 332 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKST-------RVVLRFSAMRILN-QLAM 332 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcc-------hHHHHHHHHHHHH-HHHh
Confidence 344555554433335577888888888776541 111111 1344555555432 4567888888888 4444
Q ss_pred ChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHH
Q 038250 206 AGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVV 285 (444)
Q Consensus 206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL 285 (444)
-...+..+.+ +.+-+++.+.+-.+...|..+|..- +.+++...+ -..|+..++=++++ .+..+..+|
T Consensus 333 ~~P~kv~vcN----~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL---v~~I~sfvhD~SD~----FKiI~ida~ 399 (898)
T COG5240 333 KYPQKVSVCN----KEVESLISDENRTISTYAITTLLKT--GTEETIDRL---VNLIPSFVHDMSDG----FKIIAIDAL 399 (898)
T ss_pred hCCceeeecC----hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH---HHHHHHHHHhhccC----ceEEeHHHH
Confidence 3332222221 1222333445555555566555544 344444444 13455555555443 444455555
Q ss_pred HHHhcCC
Q 038250 286 YRTITSA 292 (444)
Q Consensus 286 ~~L~~~~ 292 (444)
+.||..-
T Consensus 400 rsLsl~F 406 (898)
T COG5240 400 RSLSLLF 406 (898)
T ss_pred HHHHhhC
Confidence 5555443
No 263
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.42 E-value=0.2 Score=46.80 Aligned_cols=47 Identities=26% Similarity=0.514 Sum_probs=36.5
Q ss_pred CCCCccccccccccCc---CceecCCcchhcHHHHHHHHHhcCC--CCCCCCC
Q 038250 32 TTPNHFRCPISLDLMK---DPVTLSTGITYDRENIEKWIHEDGN--ITCPVTN 79 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~---~Pv~~~cg~~~c~~ci~~~~~~~~~--~~CP~c~ 79 (444)
.+..-|+||+-.+.-. .|+.+.|||..-+..+.+.- ..|. +.||.|-
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS-~nG~~~FKCPYCP 383 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLS-QNGVLSFKCPYCP 383 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHh-hcCcEEeeCCCCC
Confidence 3444599999887755 48899999999999988755 4554 7899994
No 264
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.24 E-value=15 Score=41.08 Aligned_cols=220 Identities=12% Similarity=0.117 Sum_probs=114.7
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHH-HhhcccccccchHHHHHHHHHHHhhcCCCh-hhhhhcccC
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAF-ETFSKTCLDENVSVLEEILSTLTLLFPLAG-EGLTYLGSA 216 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~-~~~~~i~~~ 216 (444)
+...|.++-..|..++.. +.... +++.- +..+-+.| +++... ....+..++.+|..++...+ +....+ .
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~-~~~q~-i~~I~n~L~ds~qs~----~~~~~~~rl~~L~~L~~~~~~e~~~~i--~ 737 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEG-LVEQR-IDDIFNSLLDSFQSS----SSPAQASRLKCLKRLLKLLSAEHCDLI--P 737 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-Cchhh-HHHHH-HHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHhccHHHHHHH--H
Confidence 667889999999998866 22222 22111 22233333 222111 34566667777765555444 333332 2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc--cccHHHHHHHhcCC--CC-hHHHHHHHHHHHHHhcC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI--EGAIEPLFKLIKEP--IC-PTATKASLVVVYRTITS 291 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~--~g~i~~Lv~ll~~~--~~-~~~~~~a~~aL~~L~~~ 291 (444)
-.|+-++=.++..+...+++|-..|..|+.. ......|.+ ...|...+.++..+ .+ ...+...+-++..+...
T Consensus 738 k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i--~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 738 KLIPEVILSLKEVNVKARRNAFALLVFIGAI--QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHHHhcccccHHHHhhHHHHHHHHHHH--HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 3344444444667899999999999999520 000000000 11455555555543 12 22222224455555443
Q ss_pred CCCCCchhHHHHhcCcHHH----HHHHhhccccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 292 ASATEKPIQKFVDMGLVSL----LLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 292 ~~~~~~~~~~i~~~g~v~~----Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
-..+.+.+.++. +...|.++++++++.|++.+..++. .++..-.- -....+|.+..+....+..++.
T Consensus 816 -------~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~ 887 (1176)
T KOG1248|consen 816 -------FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRK 887 (1176)
T ss_pred -------HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHH
Confidence 223334344444 4445557799999999999999886 33333222 1123456666655554555555
Q ss_pred HHHHHHHHHcc
Q 038250 367 FAVSILWKLCK 377 (444)
Q Consensus 367 ~a~~~L~~L~~ 377 (444)
..-..|-.|..
T Consensus 888 Kvr~LlekLir 898 (1176)
T KOG1248|consen 888 KVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 265
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.22 E-value=1.9 Score=44.67 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL 268 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l 268 (444)
.....-|...+.......++... .+|..+++|....+..+|..|...|-.+|..++++...| ...|++|
T Consensus 36 ~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv------aDvL~Ql 104 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV------ADVLVQL 104 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH------HHHHHHH
Confidence 44555566666544444554433 457777888888889999999999999976555555444 5679999
Q ss_pred hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---ccccchHHHHHHHHH
Q 038250 269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---DAQRSLCEKALSVLD 331 (444)
Q Consensus 269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~~~~~a~~~L~ 331 (444)
|.++ ++.....+-.+|..|-..+. + |.+..|...+. .+++.+++.++..|.
T Consensus 105 L~td-d~~E~~~v~~sL~~ll~~d~-----k------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 105 LQTD-DPVELDAVKNSLMSLLKQDP-----K------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp TT----HHHHHHHHHHHHHHHHH-H-----H------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred Hhcc-cHHHHHHHHHHHHHHHhcCc-----H------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 9987 66655556666665554432 1 23444444444 456667777777664
No 266
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.20 E-value=17 Score=34.89 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=106.2
Q ss_pred CcHHHHH-HHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 217 SSMRCMV-WFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 217 g~i~~Lv-~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
+.+..|+ ..+++.++.+|+.|...|+-.+-.+.+... ..++.+.+.++.+ +..++..|+.+|..+.....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~------~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g-- 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK------EHLPLFLQALQKD-DEEVKITALKALFDLLLTHG-- 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcC--
Confidence 4555555 567788999999999999988655543222 3367788888766 78999999999998865543
Q ss_pred CchhHH-------HHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc----ChhH
Q 038250 296 EKPIQK-------FVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV----SDLA 364 (444)
Q Consensus 296 ~~~~~~-------i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~ 364 (444)
...... ......+..+.+.|.+.+++++..|+..++.|--.+.... ....+..|+-+-.+. +...
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~L 172 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRL 172 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHH
Confidence 001111 1223567778888887788888888888887764332211 022334444333332 2333
Q ss_pred HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
++.-...+-..|.. ....++.+..+.++.+..++...
T Consensus 173 rQ~L~~Ffp~y~~s-----~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 173 RQCLSVFFPVYASS-----SPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333334444543 23345666778888888777765
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=0.18 Score=53.38 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=33.8
Q ss_pred cccccccccCcCcee-cCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 37 FRCPISLDLMKDPVT-LSTGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
-+|..|.-.+.-|++ ..|||.|.++|++ .+...||.|.-
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 599999999999976 4999999999987 45678999965
No 268
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.65 E-value=1.2 Score=40.64 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhcch---hhHHHhhcccccHHHHHHHhcC-------C-------CChHHHHHHHHHHHHHhcCCC
Q 038250 231 LSRRRNAVLVLREIVSSDH---RKVNVLLDIEGAIEPLFKLIKE-------P-------ICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 231 ~~~~~~A~~~L~~L~s~~~---~~~~~i~~~~g~i~~Lv~ll~~-------~-------~~~~~~~~a~~aL~~L~~~~~ 293 (444)
..+|++|..+|.|++ +.- .+-+.| . .-++..|++..-. + ....-++-|+.+|..|+..+.
T Consensus 80 ~~lREnalV~laNis-gqLdLs~~~e~I-~-~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~ 156 (257)
T PF12031_consen 80 EQLRENALVTLANIS-GQLDLSDYPESI-A-RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIEN 156 (257)
T ss_pred HHHhhcceEeeeeee-eeeecccCchHH-H-HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheecc
Confidence 467888888888883 332 222333 1 1223333333211 0 123568999999999999987
Q ss_pred CCCchhHHHHhcC-------cHHHHHHHhhc-cccchHHHHHHHHHHhcCChhhHH-HHhcCCCChHHHHHHHhhc
Q 038250 294 ATEKPIQKFVDMG-------LVSLLLEMLVD-AQRSLCEKALSVLDGLCSSDYGRG-DAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 294 ~~~~~~~~i~~~g-------~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~~g~i~~Lv~ll~~~ 360 (444)
|...+...+ .+..|+++|.. .++..+|-|+.+|.+|+..++.-. .+..+.+.|..|+..+...
T Consensus 157 ----NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 157 ----NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred ----CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 766666544 44555666653 477789999999999998776555 4558889999999988654
No 269
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.60 E-value=5.5 Score=44.29 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=117.3
Q ss_pred cHHHHHHHHh----cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 218 SMRCMVWFLK----SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 218 ~i~~Lv~lL~----~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
..|.++...+ .++++++..|..+|+.+.-.+.+.++ .-+|.|+.++....+|.++.++..++.-++..-.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce------s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE------SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 3455666653 24799999999999999766555443 3479999999966589999999999999887654
Q ss_pred CCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHH
Q 038250 294 ATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILW 373 (444)
Q Consensus 294 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~ 373 (444)
| +++. --+.|..-|.+.++.+++.|+.+|..|-..+ ++.--|-++.+...+..++..+...|-..+-
T Consensus 994 ----n---lie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 994 ----N---LIEP-WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred ----c---ccch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 2 2221 3456777888899999999999999997633 2244688999999998888899988888888
Q ss_pred HHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 374 KLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 374 ~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
.|+..+ ..+. +.+|.++.-|.++
T Consensus 1061 Els~k~-----n~iy-----nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1061 ELSSKG-----NTIY-----NLLPDILSRLSNG 1083 (1251)
T ss_pred Hhhhcc-----cchh-----hhchHHHHhhccC
Confidence 888742 1122 4556666655555
No 270
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.47 E-value=0.081 Score=58.31 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=43.5
Q ss_pred CCCcCCCCCCccccccccccCc-CceecCCcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 26 GGEMELTTPNHFRCPISLDLMK-DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 26 ~~~~~~~~~~~~~Cpic~~~~~-~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
+.-.....-..+.|+||+++++ .-.+..|||.||..|+..|+ .....||.|....
T Consensus 1143 ~~~y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l--~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1143 DVRYLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWL--YASSRCPICKSIK 1198 (1394)
T ss_pred hHHHHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHH--HHhccCcchhhhh
Confidence 3334445566689999999999 55667899999999999999 5667899997443
No 271
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.45 E-value=16 Score=35.07 Aligned_cols=161 Identities=15% Similarity=0.078 Sum_probs=102.0
Q ss_pred ccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh-hhhh---
Q 038250 136 KSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG-EGLT--- 211 (444)
Q Consensus 136 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~-~~~~--- 211 (444)
++.+...+..|+..|...+--+.+. .+. .++.+...++. + +..++..|+.++..++..+. +.-.
T Consensus 37 ~~~~~~vR~~al~cLGl~~Lld~~~----a~~-~l~l~~~~~~~---~----~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 37 QSSDPAVRELALKCLGLCCLLDKEL----AKE-HLPLFLQALQK---D----DEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred cCCCHHHHHHHHHHHHHHHHhChHH----HHH-HHHHHHHHHHh---C----CHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 4458899999999999988665422 111 35666666632 2 47889999998885554433 1111
Q ss_pred ----hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc-cccHHHHHHHhcCCC---ChHHHHHHHH
Q 038250 212 ----YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI-EGAIEPLFKLIKEPI---CPTATKASLV 283 (444)
Q Consensus 212 ----~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~-~g~i~~Lv~ll~~~~---~~~~~~~a~~ 283 (444)
.......+..+...|.+.+++++..|+..+..|.- .. .+ .. ..++..|+-+.-++. +...++.-..
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL-~~----~i-~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL-SG----RI-SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-cC----CC-CcHHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 12234567888888988999999999999999842 22 22 22 345666666655442 3455555555
Q ss_pred HHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc
Q 038250 284 VVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA 318 (444)
Q Consensus 284 aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~ 318 (444)
.+-..+..+. ..+..+..+.++.+-.+....
T Consensus 179 Ffp~y~~s~~----~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 179 FFPVYASSSP----ENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHcCCH----HHHHHHHHHHHHHHHHHHhCc
Confidence 5556666654 345556666788877777643
No 272
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.38 E-value=17 Score=38.70 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=73.6
Q ss_pred cCcHHHHHHH-hhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHccccccc
Q 038250 305 MGLVSLLLEM-LVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNEERE 382 (444)
Q Consensus 305 ~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~ 382 (444)
.++|..|+.. +++.+.+++..|+-+|.-++. .+...+|..|++|... ++-++..|+-+|..-|..++.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~---------~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~- 622 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF---------RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL- 622 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEe---------cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-
Confidence 3567777777 567788999999999998776 4445567777877664 888999999999888885432
Q ss_pred hHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCc
Q 038250 383 EKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECIDS 434 (444)
Q Consensus 383 ~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~~~~ 434 (444)
.+. -.|++-|-+++..-+|+.|.-.+.++--......|..+
T Consensus 623 -~eA----------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv 663 (929)
T KOG2062|consen 623 -KEA----------INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV 663 (929)
T ss_pred -HHH----------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH
Confidence 111 12333333454667777777777777655555555543
No 273
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.21 E-value=6.3 Score=44.00 Aligned_cols=144 Identities=13% Similarity=0.031 Sum_probs=92.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHH
Q 038250 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQK 301 (444)
Q Consensus 222 Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 301 (444)
++.+|....+.+|..-...|.-|+... .|+. ...=+++.|+..|++. +...+.+-...|..++..- -.+
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~k--sND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~V------G~r 651 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFF--GKEK--SNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFV------GWR 651 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHh--hhcc--cccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEE------eee
Confidence 334554455667766666666664321 1111 1223678899999887 6766665555555555442 223
Q ss_pred HHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 302 FVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 302 i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
-++.+.+|.|.+-|.++++.+...|+..|.-|+..+--++..+. ..+....-+|-..+.=++..++.++..++..
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 37888999999999999999999999999999986655554422 1222222333335666788888888887764
No 274
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.83 E-value=1.3 Score=39.89 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC-----hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHH
Q 038250 323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS-----DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQ 397 (444)
Q Consensus 323 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~ 397 (444)
+-.|+.+|.-++++++.+.-+ +++..--.+...|...+ +..+-.++++++.|.++ ++...........++|
T Consensus 117 vcnaL~lLQclaShPetk~~F-l~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkN---dsq~vi~fLltTeivP 192 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVF-LDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKN---DSQYVIKFLLTTEIVP 192 (315)
T ss_pred HHHHHHHHHHHhcCcchheee-eecccceeeHhhhhccccCCccceeeehHHHHHHHHHhC---CCHHHHHHHHhhhHHH
Confidence 467888899999999999888 77764444444443321 23556899999999997 5677777778999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 398 KLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 398 ~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
.+++++..+ ++--|--|..+++.+-.
T Consensus 193 LcLrIme~g-SElSktvaifI~qkil~ 218 (315)
T COG5209 193 LCLRIMELG-SELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHhc
Confidence 999999999 88888888888877643
No 275
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.72 E-value=0.18 Score=45.21 Aligned_cols=48 Identities=17% Similarity=0.414 Sum_probs=36.8
Q ss_pred Ccccccccccc-CcCc-ee--c--CCcchhcHHHHHHHHHhcCCCCCC--CCCcccC
Q 038250 35 NHFRCPISLDL-MKDP-VT--L--STGITYDRENIEKWIHEDGNITCP--VTNRVLT 83 (444)
Q Consensus 35 ~~~~Cpic~~~-~~~P-v~--~--~cg~~~c~~ci~~~~~~~~~~~CP--~c~~~~~ 83 (444)
++-.||+|..- +-+| +. + .|-|..|-+|+.+.| +.|.-.|| .|++.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIF-s~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIF-SRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHh-cCCCCCCCCccHHHHHH
Confidence 34689999853 4455 21 1 499999999999999 78999999 6876654
No 276
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.26 E-value=0.26 Score=49.06 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc---CcHHHH
Q 038250 235 RNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDM---GLVSLL 311 (444)
Q Consensus 235 ~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~---g~v~~L 311 (444)
..|.+++.-+ -.++..+.-++....+...+...+.+. ..-.+..++|++.|++..-..+-.+.....+. -.+..+
T Consensus 409 ~aA~Ra~~Vy-VLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 409 AAASRALGVY-VLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHhhceeE-EeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3344444443 344544544434445556666666654 45678889999998863311000122222221 123333
Q ss_pred HHHhh---ccccchHHHHHHHHHHhcCChhhHHHH---hcCCCChHHHHHHH-hhcChhHHHHHHHHHHHHccccccchH
Q 038250 312 LEMLV---DAQRSLCEKALSVLDGLCSSDYGRGDA---YNNSLIFPVIVKKI-LRVSDLATEFAVSILWKLCKNEEREEK 384 (444)
Q Consensus 312 v~lL~---~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~ 384 (444)
+..-. .....++.++..+|.++...-+.-... ....|.+..++... ......++=+|+.++.||.++ +
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn-----~ 561 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN-----P 561 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC-----c
Confidence 33322 125678899999999987633211111 00112222222211 123567888999999999986 2
Q ss_pred HH-HHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 385 TA-FAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 385 ~~-~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
.. .+.+- ..-+++.|..|+.+..+-++|-.|+..|.....
T Consensus 562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 23 33333 466788999999888788999999987765543
No 277
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=0.68 Score=45.10 Aligned_cols=46 Identities=15% Similarity=0.370 Sum_probs=32.9
Q ss_pred CCccccccccccCcC---ceecCCcchhcHHHHHHHHHh---cCC---CCCCCCC
Q 038250 34 PNHFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHE---DGN---ITCPVTN 79 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~---~~~---~~CP~c~ 79 (444)
...|-|.||.+...- =+.++|+|.||+.|...|+.. .|. ..||.++
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 344899999887653 345599999999999999852 222 3577653
No 278
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.92 E-value=42 Score=35.97 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=86.9
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
..|..+..+|.+.++.++-.|+.+|..| +.++..-..- ...+++++.+..+-.++-..+--|..+...
T Consensus 243 ~~i~~i~~lL~stssaV~fEaa~tlv~l-S~~p~alk~A------a~~~i~l~~kesdnnvklIvldrl~~l~~~----- 310 (948)
T KOG1058|consen 243 RYIRCIYNLLSSTSSAVIFEAAGTLVTL-SNDPTALKAA------ASTYIDLLVKESDNNVKLIVLDRLSELKAL----- 310 (948)
T ss_pred HHHHHHHHHHhcCCchhhhhhcceEEEc-cCCHHHHHHH------HHHHHHHHHhccCcchhhhhHHHHHHHhhh-----
Confidence 3456666666666666666666666666 4444322222 122333332221122232233333333311
Q ss_pred chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-------ChhHHHHHH
Q 038250 297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-------SDLATEFAV 369 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-------~~~~~~~a~ 369 (444)
+...+ .|.+--++.+|...+-+++.+++.+...|+.+. +-.++ +..|-+-+... +..-++.-+
T Consensus 311 -~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-Nvedi------v~~Lkke~~kT~~~e~d~~~~yRqlLi 380 (948)
T KOG1058|consen 311 -HEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-NVEDI------VQFLKKEVMKTHNEESDDNGKYRQLLI 380 (948)
T ss_pred -hHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-cHHHH------HHHHHHHHHhccccccccchHHHHHHH
Confidence 12222 234555667777888889999998888887632 22222 11222222221 112245666
Q ss_pred HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
.++...+..-|+ . .+.+|+.|++++.+. + .+.|...|..+++
T Consensus 381 ktih~cav~Fp~----~-----aatvV~~ll~fisD~-N---~~aas~vl~FvrE 422 (948)
T KOG1058|consen 381 KTIHACAVKFPE----V-----AATVVSLLLDFISDS-N---EAAASDVLMFVRE 422 (948)
T ss_pred HHHHHHhhcChH----H-----HHHHHHHHHHHhccC-C---HHHHHHHHHHHHH
Confidence 777776664332 2 356788899988766 3 2344445555554
No 279
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.38 E-value=44 Score=36.52 Aligned_cols=156 Identities=12% Similarity=0.031 Sum_probs=101.4
Q ss_pred CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Q 038250 168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK--SGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~L~ 245 (444)
+++..|.++...+ ..++...-+.+|...++.+++-. ...++-..|.++.+.. ++++.+-..+-.++..|
T Consensus 530 ~ild~L~qlas~~-------s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el- 600 (1005)
T KOG2274|consen 530 MILDGLLQLASKS-------SDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEEL- 600 (1005)
T ss_pred HHHHHHHHHcccc-------cHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHH-
Confidence 4555666666322 36677777777875566665433 3344666777777653 45787777788888888
Q ss_pred hcchhhHHHhhcccccHHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccc
Q 038250 246 SSDHRKVNVLLDIEGAIEPLFKLIKEPI---CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRS 321 (444)
Q Consensus 246 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~ 321 (444)
....++...+ . .-.||.||..|..+. .......|+..|..+.++.+ +..-..++. -+.|++.++.- +++..
T Consensus 601 ~q~~~~~g~m-~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp--~pL~~~l~~-~~FpaVak~tlHsdD~~ 675 (1005)
T KOG2274|consen 601 LQIAANYGPM-Q-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP--SPLPNLLIC-YAFPAVAKITLHSDDHE 675 (1005)
T ss_pred HHHHHhhcch-H-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC--CCccHHHHH-HHhHHhHhheeecCChH
Confidence 3444444445 2 468999999998762 14566777777777777765 223333333 37888888874 45666
Q ss_pred hHHHHHHHHHHhcCCh
Q 038250 322 LCEKALSVLDGLCSSD 337 (444)
Q Consensus 322 ~~~~a~~~L~~L~~~~ 337 (444)
.-.++-.+|+.+....
T Consensus 676 tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 676 TLQNATECLRALISVT 691 (1005)
T ss_pred HHHhHHHHHHHHHhcC
Confidence 7777888888776643
No 280
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.18 E-value=19 Score=39.15 Aligned_cols=183 Identities=12% Similarity=0.097 Sum_probs=122.3
Q ss_pred cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250 228 SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL 307 (444)
Q Consensus 228 ~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~ 307 (444)
+..+...-.|.+++...++....+...+ .-++...+..+..+..+.++-.|++++..-+..+ .-.=...+.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~---~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~------vl~~~~p~i 531 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL---QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVK------VLLSLQPMI 531 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH---HHHHHHHHHhhccCCCCchhHHHHHHHHhccCce------eccccchHH
Confidence 3467776788888888855544555555 2456667777766544566666666666555322 222234688
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHH
Q 038250 308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKT 385 (444)
Q Consensus 308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~ 385 (444)
++.|+++....+.++-...+.+|...+.-+...... .++...|.++.++.+. ++.+...+--.+-.|+.. +
T Consensus 532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~------~ 604 (1005)
T KOG2274|consen 532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI------A 604 (1005)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH------H
Confidence 999999998888888888999999999877666666 6778889998888663 455555555555555551 1
Q ss_pred HHHHHHhhChHHHHHHHHhcCC---ChHHHHHHHHHHHHHHhhc
Q 038250 386 AFAEALQVGAFQKLLLLLQVGC---ADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 386 ~~~~~~~~g~l~~Ll~ll~~~~---~~~~k~~a~~ll~~l~~~~ 426 (444)
....=...-.+|.|+.+|+... .......|..+|..+-+..
T Consensus 605 ~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t 648 (1005)
T KOG2274|consen 605 ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT 648 (1005)
T ss_pred HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC
Confidence 2222224678899999998872 1566777777888665544
No 281
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.14 E-value=0.97 Score=42.88 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=47.6
Q ss_pred CccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHH-HHHHHHHHHHhcccCCC
Q 038250 35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHT-IRRMIQDWCVENRSYGI 109 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~-l~~~i~~~~~~~~~~~~ 109 (444)
+.-.|.||.+-..---.++|+|..|--|--+...--..+.||.|+..-....++.... =-.-...|+.++...++
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~~~DI~D~~~~k~~~EK~GI 135 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTASSPADITDRRQWKGREEKVGI 135 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecCCCCcchhHhhhcccccceee
Confidence 3468999999888777889999999999887542234578999986543211111100 01123467776665555
No 282
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=86.93 E-value=0.34 Score=33.36 Aligned_cols=39 Identities=18% Similarity=0.422 Sum_probs=25.9
Q ss_pred CccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
+.|.||.|.+.+.. ..+...+.+....+.....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 36899999984332 3456666666552334578999965
No 283
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.86 E-value=41 Score=35.45 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhcc---cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHH
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLG---SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPL 265 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~L 265 (444)
.+++--|+-+|+..+..+..+-..+- ....+..++..+. .++..+..+++.|.|+ -.++..++.+... ...+
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~-f~~~~g~~~~~s~---~~~i 632 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANL-FSNPAGRELFMSR---LESI 632 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHh-ccCHHHHHHHHHH---HHHH
Confidence 56677788888843333332222111 1234555555554 5678888999999999 5567777777332 2333
Q ss_pred HHHh---cCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcCCh
Q 038250 266 FKLI---KEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 266 v~ll---~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~ 337 (444)
...+ +...+..++.+.+....|++..- .+.-.+.|..+.|..++... +-+..-+.+.+|.+|+..+
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l------~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLL------IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHH------HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 3222 22222334443333334544321 11112256667766666532 2234456778888998888
Q ss_pred hhHHHHhcCCCChHHHHHHHhh
Q 038250 338 YGRGDAYNNSLIFPVIVKKILR 359 (444)
Q Consensus 338 ~~~~~i~~~~g~i~~Lv~ll~~ 359 (444)
....++ ...-.+..+++.+.+
T Consensus 707 ~~~~~~-A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQL-AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHH-HHhcCHHHHHHHHHH
Confidence 788877 455567788777765
No 284
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.74 E-value=3.5 Score=44.41 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=111.5
Q ss_pred HHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHH--HHHHHH
Q 038250 149 KIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMR--CMVWFL 226 (444)
Q Consensus 149 ~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~--~Lv~lL 226 (444)
.|.....+++.+.+.+.+.||+..+...++.+ + +.+++..+++.+. ++..-.+++........+. .+-.++
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~-----~~~~~~~il~~l~-n~~~~~~~~~~~~~~~~~~~~~f~~~~ 566 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-D-----NEELHRKILGLLG-NLAEVLELRELLMIFEFIDFSVFKVLL 566 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-c-----chhHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 67788888899999999999999999999876 2 4678999999998 5655554444333222222 333344
Q ss_pred hcCC-HHHHHHHHHHHHHHHhcchh---------h----HHHhh---------cccccHHH-HHHHhcCCCChHHHHHHH
Q 038250 227 KSGD-LSRRRNAVLVLREIVSSDHR---------K----VNVLL---------DIEGAIEP-LFKLIKEPICPTATKASL 282 (444)
Q Consensus 227 ~~~~-~~~~~~A~~~L~~L~s~~~~---------~----~~~i~---------~~~g~i~~-Lv~ll~~~~~~~~~~~a~ 282 (444)
..-+ .+.-..|+.+|..+.+..++ . .+.+. ....-+.+ +..++..+..+..+..|+
T Consensus 567 ~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal 646 (699)
T KOG3665|consen 567 NKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWAL 646 (699)
T ss_pred hhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHH
Confidence 3333 36777788888888654221 0 00000 11123334 555666555678899999
Q ss_pred HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHH
Q 038250 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVL 330 (444)
Q Consensus 283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L 330 (444)
+++.++..... ++++.+.+.|+++.+.+.-... ...+++.+...+
T Consensus 647 ~ti~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 647 WTIKNVLEQNK---EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHHHHHHHcCh---hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 99999998875 5888888899988887776422 333444444333
No 285
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=86.45 E-value=0.23 Score=39.61 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=28.9
Q ss_pred cCCCCCCccccccccccCcCceec--CCcchhcHHHHH
Q 038250 29 MELTTPNHFRCPISLDLMKDPVTL--STGITYDRENIE 64 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~Pv~~--~cg~~~c~~ci~ 64 (444)
....+.+.-.|++|.+.+.+.+.. +|||.|...|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345567777899999999977544 999999999975
No 286
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.40 E-value=52 Score=35.48 Aligned_cols=206 Identities=15% Similarity=0.152 Sum_probs=125.7
Q ss_pred HHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh
Q 038250 171 SVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR 250 (444)
Q Consensus 171 ~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~ 250 (444)
.-|..+|++.+ |. ....|+.-+..+++...+. ....|.+|+-.-+.+.+++...-.-|..-|...++
T Consensus 38 ~dL~~lLdSnk------d~-~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 38 DDLKQLLDSNK------DS-LKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred HHHHHHHhccc------cH-HHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC
Confidence 45778886542 23 3344444333255544442 34578888888889999998877777777443333
Q ss_pred hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHH
Q 038250 251 KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVL 330 (444)
Q Consensus 251 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L 330 (444)
-..+ -|..+-+-|+++ ++.++..|+++|..+ |..++..=++-++-++..+.++.++..|+.+|
T Consensus 105 -LALL-----SIntfQk~L~Dp-N~LiRasALRvlSsI----------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AI 167 (968)
T KOG1060|consen 105 -LALL-----SINTFQKALKDP-NQLIRASALRVLSSI----------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAI 167 (968)
T ss_pred -ceee-----eHHHHHhhhcCC-cHHHHHHHHHHHHhc----------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 2223 256677778888 787877776666554 33333333344455566677899999999988
Q ss_pred HHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCCh
Q 038250 331 DGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCAD 409 (444)
Q Consensus 331 ~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~ 409 (444)
-.|=. .++.+.++ +..+-.+|...++.+...|+.+.-.+|-. +.+.+ .+-...|..+|-.- ++
T Consensus 168 pKLYsLd~e~k~qL------~e~I~~LLaD~splVvgsAv~AF~evCPe--------rldLI-HknyrklC~ll~dv-de 231 (968)
T KOG1060|consen 168 PKLYSLDPEQKDQL------EEVIKKLLADRSPLVVGSAVMAFEEVCPE--------RLDLI-HKNYRKLCRLLPDV-DE 231 (968)
T ss_pred HHHhcCChhhHHHH------HHHHHHHhcCCCCcchhHHHHHHHHhchh--------HHHHh-hHHHHHHHhhccch-hh
Confidence 88754 45555554 23343444455888889999998888862 22221 45667888877554 33
Q ss_pred HHHHHHHHHHHHHHhh
Q 038250 410 KTKEHVSELLKLLNPH 425 (444)
Q Consensus 410 ~~k~~a~~ll~~l~~~ 425 (444)
=.+-. ++++|-++
T Consensus 232 WgQvv---lI~mL~RY 244 (968)
T KOG1060|consen 232 WGQVV---LINMLTRY 244 (968)
T ss_pred hhHHH---HHHHHHHH
Confidence 33333 44444443
No 287
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.35 E-value=36 Score=37.46 Aligned_cols=145 Identities=13% Similarity=0.071 Sum_probs=86.4
Q ss_pred CchHHHHHHHHhhccccc-ccchHHHHHHHHHHHhhc---CCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038250 168 GAVSVLAEAFETFSKTCL-DENVSVLEEILSTLTLLF---PLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLRE 243 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~-~~~~~~~~~a~~~L~~~l---~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~ 243 (444)
|.++.+++.|.++...+. ..++...+.|+.++..++ ......+..+ +.=.++.+...+++.---.|..||+++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 577888888876533321 235566667777666322 2222222221 22235556666677777889999999999
Q ss_pred HHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhccc
Q 038250 244 IVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDAQ 319 (444)
Q Consensus 244 L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~ 319 (444)
+++.+=.....+ ..++......|.++.+..++-.|+-||..+-++.+ .+...+.. .+.++.|+.+....+
T Consensus 489 ~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~---~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQE---QADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch---hhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 954433333333 35667777777744467888889999999888765 23233332 234455555555443
No 288
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.99 E-value=14 Score=40.27 Aligned_cols=209 Identities=14% Similarity=0.070 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhcc-----cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-------------h
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLG-----SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-------------R 250 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~-----~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-------------~ 250 (444)
.+.++.|+..|.|. .|..+. ....-..|+.+|+. +++-..|+.++.-+.++++ -
T Consensus 788 ~dls~~al~~l~Wv------~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riL 859 (1030)
T KOG1967|consen 788 LDLSEIALTVLAWV------TKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRIL 859 (1030)
T ss_pred cchhhHHHHHHHHH------HHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHH
Confidence 45566666666642 222221 11223455555544 2333345555555533332 3
Q ss_pred hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhccccchHHHHHH
Q 038250 251 KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDAQRSLCEKALS 328 (444)
Q Consensus 251 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~a~~ 328 (444)
+|+.+ - ..++|.|++..... ....+..-+.+|.++-.+-+ +..+.. ....|.|++.|+-.|..++-.++.
T Consensus 860 ykQRf-F-~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP-----~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~ 931 (1030)
T KOG1967|consen 860 YKQRF-F-CDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVP-----KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLR 931 (1030)
T ss_pred HHHHH-H-HhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCC-----HHhhccchhhHHHHHHHhcCCCccchhhhHhh
Confidence 45555 2 47899999998843 34567777888888887654 344433 467888999999889999888888
Q ss_pred HHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC---hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc
Q 038250 329 VLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS---DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV 405 (444)
Q Consensus 329 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~ 405 (444)
+|.-+..-.+.-..- .-.-.+|.+..+=.+.+ ..+++.|+..|..|....|. ..-.-.+..++..|...|..
T Consensus 932 ~i~~~l~~~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~----~~l~~fr~~Vl~al~k~LdD 1006 (1030)
T KOG1967|consen 932 TIPMLLTESETLQTE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT----KSLLSFRPLVLRALIKILDD 1006 (1030)
T ss_pred hhhHHHHhccccchH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC----cccccccHHHHHHhhhccCc
Confidence 888766422221111 01234566655322222 46789999999999996654 12222256778888888876
Q ss_pred CCChHHHHHHHHHH
Q 038250 406 GCADKTKEHVSELL 419 (444)
Q Consensus 406 ~~~~~~k~~a~~ll 419 (444)
. -..+|+.|+..-
T Consensus 1007 k-KRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 1007 K-KRLVRKEAVDTR 1019 (1030)
T ss_pred H-HHHHHHHHHHHh
Confidence 6 667788776643
No 289
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.89 E-value=7.4 Score=42.21 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=99.7
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
...+|.|++.........|.+=..+|.++.+..|. ...+-.....+|.|++.|.-+ +..++-.++.+|.-+..-..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~-- 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESE-- 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhcc--
Confidence 56789999988866777888888889888665553 222223345778888888877 78888888888886654432
Q ss_pred CchhHHHHhcCcHHHHHHHhhccc---cchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQ---RSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSI 371 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~---~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~ 371 (444)
.....-++ -.||.++.+=++.+ ..+++.|+..|..|.. .+..+-.- ....++..|.+.|......+++.|+.+
T Consensus 942 -tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~-fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 -TLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS-FRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred -ccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc-ccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 12222222 36777777766654 4678999999999998 44443333 344566777776655555567777654
No 290
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=85.79 E-value=8.6 Score=42.40 Aligned_cols=195 Identities=13% Similarity=0.077 Sum_probs=123.1
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
+++..|.+.|++.+..++..||+-++.+++..+ .+.. ..+|...+.++.-..++..-..|+-+|..|+...-
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La---d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl--- 412 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA---DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL--- 412 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH---HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC---
Confidence 567777777778889999999999999977666 3322 35677777766655346777788999999987753
Q ss_pred chhHHHHhcCcHHHHHHHhhc--------cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH-----hhcChh
Q 038250 297 KPIQKFVDMGLVSLLLEMLVD--------AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI-----LRVSDL 363 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~--------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll-----~~~~~~ 363 (444)
......+ .++|.+++-|.- ....+++.|+-+++.++...+-. .+ .+.+..|...| ....-.
T Consensus 413 -Llps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~-~l---~p~l~~L~s~LL~~AlFDrevn 486 (1133)
T KOG1943|consen 413 -LLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS-DL---KPVLQSLASALLIVALFDREVN 486 (1133)
T ss_pred -cchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh-hh---hHHHHHHHHHHHHHHhcCchhh
Confidence 3332222 378888877752 25679999999999998743322 11 11222222222 223445
Q ss_pred HHHHHHHHHHHHccccccc----------------hHH----HH--HHHHhhChHHHHHH-HHhcC---CChHHHHHHHH
Q 038250 364 ATEFAVSILWKLCKNEERE----------------EKT----AF--AEALQVGAFQKLLL-LLQVG---CADKTKEHVSE 417 (444)
Q Consensus 364 ~~~~a~~~L~~L~~~~~~~----------------~~~----~~--~~~~~~g~l~~Ll~-ll~~~---~~~~~k~~a~~ 417 (444)
.+..|.+||.......++. +.. .. .-+.-.|...++++ ++... =+..+|+-|+.
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 6777777777765542221 000 01 11223677777777 44442 25889999999
Q ss_pred HHHHHHhh
Q 038250 418 LLKLLNPH 425 (444)
Q Consensus 418 ll~~l~~~ 425 (444)
.|..++..
T Consensus 567 aL~~Ls~~ 574 (1133)
T KOG1943|consen 567 ALHKLSLT 574 (1133)
T ss_pred HHHHHHHh
Confidence 77777654
No 291
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.77 E-value=37 Score=36.09 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ 267 (444)
+..|+...+.+|. .+......+..-+-.+....+..-|....+.+|.+|+.+|..+ .+++. -+ ...+...++.
T Consensus 98 dk~VRfrvlqila-~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl-Q~d~~-de----e~~v~n~l~~ 170 (892)
T KOG2025|consen 98 DKKVRFRVLQILA-LLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL-QGDPK-DE----ECPVVNLLKD 170 (892)
T ss_pred chhHHHHHHHHHH-HHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH-hcCCC-CC----cccHHHHHHH
Confidence 6889999999998 4443211122222234455666666667789999999999999 44332 11 1244567888
Q ss_pred HhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 268 LIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 268 ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
+++.+.++++++.| |.|++.++.
T Consensus 171 liqnDpS~EVRRaa---LsnI~vdns 193 (892)
T KOG2025|consen 171 LIQNDPSDEVRRAA---LSNISVDNS 193 (892)
T ss_pred HHhcCCcHHHHHHH---HHhhccCcc
Confidence 88877678888855 567776664
No 292
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.55 E-value=43 Score=33.79 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=103.4
Q ss_pred HHHHHHHHhc--C--CHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 219 MRCMVWFLKS--G--DLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 219 i~~Lv~lL~~--~--~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
++.+.++|.. + ..+-++.|..-|..+.... -...+.- - ..++..+++.|.+..+...++-|++.|..++.+..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-F-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-H-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 4444445532 2 3455666666555553322 2223322 1 24567888999885578899999999999998763
Q ss_pred CCCchhHHHHh--cCcHHHHHHHhhccccchH-HHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHH
Q 038250 294 ATEKPIQKFVD--MGLVSLLLEMLVDAQRSLC-EKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVS 370 (444)
Q Consensus 294 ~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~-~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~ 370 (444)
.++.+ .=+|..+++.-.+.+..+. ..+=.++..|+.+..-+. |..+..++.+.++..--.++.
T Consensus 363 ------~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iK 428 (516)
T KOG2956|consen 363 ------ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIK 428 (516)
T ss_pred ------HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHH
Confidence 33333 2355555555555554443 333344445554333222 223444555544444444555
Q ss_pred HHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH-HHHHHHhh
Q 038250 371 ILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE-LLKLLNPH 425 (444)
Q Consensus 371 ~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~-ll~~l~~~ 425 (444)
.+-.++..-. .+..... =..+.|.+++.-.+. +..+|+.|+. |+.++.+-
T Consensus 429 m~Tkl~e~l~---~EeL~~l-l~diaP~~iqay~S~-SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 429 MLTKLFERLS---AEELLNL-LPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred HHHHHHhhcC---HHHHHHh-hhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHHHH
Confidence 5555555321 1222221 256778888888887 6777777776 66666654
No 293
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=0.19 Score=46.40 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=32.2
Q ss_pred ccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 36 HFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
+..|-||.+.-+|-|.++|||. -|..|-.+ ...||+||+-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr------m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR------MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc------cccCchHHHHH
Confidence 6799999999999999999993 56666332 23799998643
No 294
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.26 E-value=40 Score=37.16 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHh------cC--CHHHHHHHHHHHHHHHhc---chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 216 ASSMRCMVWFLK------SG--DLSRRRNAVLVLREIVSS---DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 216 ~g~i~~Lv~lL~------~~--~~~~~~~A~~~L~~L~s~---~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
.|.++.+++.|. .. ++..++-|..++++|++. ...++..+ . .=.++.+.-.++++ .--.+..|+|.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E-~flv~hVfP~f~s~-~g~Lrarac~v 485 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-E-YFLVNHVFPEFQSP-YGYLRARACWV 485 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-H-HHHHHHhhHhhcCc-hhHHHHHHHHH
Confidence 477888888887 22 456667788888888532 22344444 2 22334444445555 45688999999
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccchHHHHHHHHHHhcCChh
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDY 338 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~ 338 (444)
+...+.-+= +..-.-..++......|. +.+-.++-.|+-+|.-+-.+.+
T Consensus 486 l~~~~~~df-----~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 486 LSQFSSIDF-----KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HHHHHhccC-----CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 999985432 222222346777888887 6677888888888887766444
No 295
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.10 E-value=7 Score=32.98 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=61.7
Q ss_pred ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccC
Q 038250 349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRAR 428 (444)
Q Consensus 349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~ 428 (444)
++..|.+-|..+++.++-.|+.+|-.+..+.+ .....++...+.+..|+.++.....+.+|+++..++..-+..-.+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG---~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCG---THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45566677777889999999999999888643 456666778999999999998766789999999988887765543
Q ss_pred C
Q 038250 429 L 429 (444)
Q Consensus 429 ~ 429 (444)
.
T Consensus 119 ~ 119 (142)
T cd03569 119 K 119 (142)
T ss_pred C
Confidence 3
No 296
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.98 E-value=50 Score=35.11 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=85.7
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHHHHhcchhh----------HHHhhcccccHHHHHHHhcC---CCChHHHHHH
Q 038250 219 MRCMVWFLKS----GDLSRRRNAVLVLREIVSSDHRK----------VNVLLDIEGAIEPLFKLIKE---PICPTATKAS 281 (444)
Q Consensus 219 i~~Lv~lL~~----~~~~~~~~A~~~L~~L~s~~~~~----------~~~i~~~~g~i~~Lv~ll~~---~~~~~~~~~a 281 (444)
+..+..++++ .+..++..|..+++.|....-.. ...+ ....++.|...+.. ..+...+..+
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI--IEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS----GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh--HHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 5555555543 35678888888888874221111 1122 24577777777762 2256778889
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~ 358 (444)
+.+|.|+.... .++.|..++... +..++-.|+.+|..++.... ..+ .+.|..++.
T Consensus 511 LkaLgN~g~~~--------------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--~~v------~~~l~~I~~ 568 (618)
T PF01347_consen 511 LKALGNLGHPE--------------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--EKV------REILLPIFM 568 (618)
T ss_dssp HHHHHHHT-GG--------------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--HHH------HHHHHHHHH
T ss_pred HHHhhccCCch--------------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--HHH------HHHHHHHhc
Confidence 99999996432 577777777655 56678888888887754221 122 345666666
Q ss_pred hc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHH
Q 038250 359 RV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKE 413 (444)
Q Consensus 359 ~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~ 413 (444)
+. +..++-.|..+|.. ..|+ ...+..+...+..+.+..+..
T Consensus 569 n~~e~~EvRiaA~~~lm~---~~P~-----------~~~l~~i~~~l~~E~~~QV~s 611 (618)
T PF01347_consen 569 NTTEDPEVRIAAYLILMR---CNPS-----------PSVLQRIAQSLWNEPSNQVAS 611 (618)
T ss_dssp -TTS-HHHHHHHHHHHHH---T--------------HHHHHHHHHHHTT-S-HHHHH
T ss_pred CCCCChhHHHHHHHHHHh---cCCC-----------HHHHHHHHHHHhhCchHHHHH
Confidence 54 33445445443333 3232 344566667776664444443
No 297
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.24 E-value=0.51 Score=42.79 Aligned_cols=50 Identities=10% Similarity=0.231 Sum_probs=32.4
Q ss_pred cccccccccC-cCce-ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250 37 FRCPISLDLM-KDPV-TLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN 90 (444)
Q Consensus 37 ~~Cpic~~~~-~~Pv-~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n 90 (444)
..|.-|...- .+|. ++.|+|.||..|...-. ...||.|++.+....+..|
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC----ccccccccceeeeeecccc
Confidence 3566555443 3443 45899999999965422 2389999998765555444
No 298
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=83.97 E-value=23 Score=38.81 Aligned_cols=177 Identities=15% Similarity=0.185 Sum_probs=106.6
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhh-cccccccchHHHHHHHHHHHhhcCCChhh-hhhccc
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETF-SKTCLDENVSVLEEILSTLTLLFPLAGEG-LTYLGS 215 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~~~~~~~~a~~~L~~~l~~~~~~-~~~i~~ 215 (444)
.+...+.+|+..+.....+.. ...+.|....+.-++... . |.+..+...|+.+|..+....... +...
T Consensus 265 ~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~k----DaN~~v~~~aa~~l~~ia~~lr~~~~~~~-- 334 (815)
T KOG1820|consen 265 KKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLK----DANINVVMLAAQILELIAKKLRPLFRKYA-- 334 (815)
T ss_pred cchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhcc----CcchhHHHHHHHHHHHHHHhcchhhHHHH--
Confidence 478899999999999886533 222233333333333211 2 225666666766666333322221 2111
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
.+..+.|..-+......+++.+..++-.+. . .. .....++.+...++++ +|..+......+........
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~-n------s~-~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~-- 403 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAIL-N------ST-PLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLG-- 403 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHH-h------cc-cHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcC--
Confidence 356788888777777777777777766663 2 11 1234567788888888 78887775555554433322
Q ss_pred CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+.....-.-.+.++.++....+.+.+++..|..++..+-.
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 1123333334577888888888899999999888887654
No 299
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=83.94 E-value=11 Score=35.38 Aligned_cols=167 Identities=12% Similarity=0.035 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHHhccCcccchhHhhcC--chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc-C
Q 038250 140 QAGCRDLVAKIKKWTKESDRNKRCIVDNG--AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS-A 216 (444)
Q Consensus 140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G--~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~-~ 216 (444)
.+.+.=++.-+|-++.+.+ .-..+...+ ....+..++....++ ..+..+--+++++. |+-.++..+..+.. .
T Consensus 77 ~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~ml~lR~l~-NlF~~~~~~~~~~~~~ 151 (268)
T PF08324_consen 77 PESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSS---SPPANQMLALRLLA-NLFSHPPGRQLLLSHF 151 (268)
T ss_dssp CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTT---SSHHHHHHHHHHHH-HHTTSCCCHHHHHCTH
T ss_pred CccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCC---CcHHHHHHHHHHHH-HhhCCCccHHHHHhcc
Confidence 3445566666666665433 333343332 245555555432211 24667778999999 77777777776654 3
Q ss_pred C-cHHHHHHHHhcC----CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh-cCCCChHHHHHHHHHHHHHhc
Q 038250 217 S-SMRCMVWFLKSG----DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-KEPICPTATKASLVVVYRTIT 290 (444)
Q Consensus 217 g-~i~~Lv~lL~~~----~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~aL~~L~~ 290 (444)
+ .+-..+..+... +..++..++.++.|++...-..+..--.....+..+++.+ ....++++.-.++.||.+|..
T Consensus 152 ~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 152 DSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 3 344444433333 6788899999999995332222210000113466666633 333478999999999999997
Q ss_pred CCCCCCchhHHHHh-cCcHHHHHHHh
Q 038250 291 SASATEKPIQKFVD-MGLVSLLLEML 315 (444)
Q Consensus 291 ~~~~~~~~~~~i~~-~g~v~~Lv~lL 315 (444)
.+. ......+ .|+-..+-..-
T Consensus 232 ~~~----~~~~~~~~l~~~~~~~~~~ 253 (268)
T PF08324_consen 232 SSD----SAKQLAKSLDVKSVLSKKA 253 (268)
T ss_dssp CSH----HHHHHCCCCTHHHHHHHHH
T ss_pred cCh----hHHHHHHHcChHHHHHHHH
Confidence 664 5555555 34444444443
No 300
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=83.89 E-value=1.4 Score=32.39 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=21.0
Q ss_pred cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||.+-.- +|... .|+.-.|+.|.+==. ..++..||.|+..+.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-keg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-KEGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-HTS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-hcCcccccccCCCcc
Confidence 48999988654 45444 689999999987544 578899999986654
No 301
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.87 E-value=8.3 Score=32.59 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=61.8
Q ss_pred ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccC
Q 038250 349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRAR 428 (444)
Q Consensus 349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~ 428 (444)
++..|.+-|.+.++.++-.|+.+|-.+..+.+ .....++.....+..|+.++.......++++...+++..+....+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCG---KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 34566666777789999999999999998754 456667778999999999998855889999999988877765543
Q ss_pred C
Q 038250 429 L 429 (444)
Q Consensus 429 ~ 429 (444)
.
T Consensus 115 ~ 115 (144)
T cd03568 115 D 115 (144)
T ss_pred C
Confidence 3
No 302
>PHA03096 p28-like protein; Provisional
Probab=83.79 E-value=0.74 Score=43.53 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=30.1
Q ss_pred cccccccccCcCc--------eecCCcchhcHHHHHHHHHhcC-CCCCCCCC
Q 038250 37 FRCPISLDLMKDP--------VTLSTGITYDRENIEKWIHEDG-NITCPVTN 79 (444)
Q Consensus 37 ~~Cpic~~~~~~P--------v~~~cg~~~c~~ci~~~~~~~~-~~~CP~c~ 79 (444)
-.|.||++....- +...|.|.||..|+..|..+.. ..+||.|+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 4799999875531 2337999999999999985432 24566554
No 303
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.72 E-value=15 Score=34.94 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=90.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
+...+..|.+.+++.+..+.-.|..|+..+++..... - .-+|..+++-+++. ...+-+.|+.++..|.+.-.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~-L-~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln----- 161 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPM-L-HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLN----- 161 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHH-H-HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHH-----
Confidence 5556677888889999999999998866665544433 1 46788888888887 57789999999999987643
Q ss_pred hHHHHhcCcHHHHHHHhh-c---cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHH
Q 038250 299 IQKFVDMGLVSLLLEMLV-D---AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVS 370 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~-~---~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~ 370 (444)
..+.+ ..+.++..|. . .+.-+++.|-.+|..+..+-.-.. +++.|+..++..+++++..++.
T Consensus 162 -~~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 162 -NSIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAAL 227 (334)
T ss_pred -HHHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhhc
Confidence 22222 4555554443 2 244578999999998887433222 3445555566677777766553
No 304
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.71 E-value=1 Score=42.95 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=47.1
Q ss_pred CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250 32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN 104 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~ 104 (444)
...+-+-||+|.+.+..|+.= .-||.-|..|-.+ -...||.|+.++.. ....++...++......
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g~---~R~~amEkV~e~~~vpC 109 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK-----VSNKCPTCRLPIGN---IRCRAMEKVAEAVLVPC 109 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh-----hcccCCcccccccc---HHHHHHHHHHHhceecc
Confidence 345558999999999999753 4589999999654 23469999988862 25677777776654443
No 305
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.65 E-value=25 Score=39.08 Aligned_cols=257 Identities=13% Similarity=0.084 Sum_probs=139.7
Q ss_pred HHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHH
Q 038250 147 VAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFL 226 (444)
Q Consensus 147 l~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL 226 (444)
-..|-.+.+.+.+|...+.++.|+..++.++-+ .+-+...++++.-++..++.. ++..-+-.+|..|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin---------dehRSslLrivscLitvdpkq----vhhqelmalVdtL 729 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN---------DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTL 729 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec---------hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHH
Confidence 456777889999999999999998888887721 122333333333222333321 1224466788888
Q ss_pred hcCC------------HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC---------CCCh----HHHHHH
Q 038250 227 KSGD------------LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE---------PICP----TATKAS 281 (444)
Q Consensus 227 ~~~~------------~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~---------~~~~----~~~~~a 281 (444)
+++- ......-..+++.+...+-..+..++. .|+...|..+|-. ..+. +..+..
T Consensus 730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkil 808 (2799)
T KOG1788|consen 730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL 808 (2799)
T ss_pred HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence 7742 123444556677774445566777755 5777777666531 1121 122222
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc--------------------------cccchHHHHHHHHHHhcC
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD--------------------------AQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~--------------------------~~~~~~~~a~~~L~~L~~ 335 (444)
.+ +..++...+ ..|+..+-..=--+....+|+. +.-.--..|+..+..+-.
T Consensus 809 Fr-lfTlavcen--asNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeled 885 (2799)
T KOG1788|consen 809 FR-LFTLAVCEN--ASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELED 885 (2799)
T ss_pred HH-HHHHHHhhc--chhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccc
Confidence 22 223333221 1244433221111222222221 111111122222222211
Q ss_pred -----------ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHh
Q 038250 336 -----------SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQ 404 (444)
Q Consensus 336 -----------~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~ 404 (444)
....++.+ ..+|++..++..+.-..+..+-.-+..|..+++-+|. .....-..|.++.|+++..
T Consensus 886 nifavntPsGqfnpdk~~i-ynagavRvlirslLlnypK~qlefl~lleSlaRaspf----naelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 886 NIFAVNTPSGQFNPDKQKI-YNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPF----NAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred ceeeeccCCCCcCchHhhh-cccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCC----chhhhhcccHHHHHHHHhh
Confidence 01245566 7889999999998888888888888999999985543 3333335799988888543
Q ss_pred ---cCCChHHHHHHHHHHHHHHhhc
Q 038250 405 ---VGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 405 ---~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
+| +.-.--.|-+++.++.-++
T Consensus 961 pflsg-sspfLshalkIvemLgayr 984 (2799)
T KOG1788|consen 961 PFLSG-SSPFLSHALKIVEMLGAYR 984 (2799)
T ss_pred hhhcC-CchHhhccHHHHHHHhhcc
Confidence 34 3344456666777776544
No 306
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.64 E-value=1.2 Score=44.37 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=40.8
Q ss_pred cccccccc-ccCcCce---ecCCcchhcHHHHHHHHHhc----CCCCCCC--CCcccCCC---CCCccHHHHHHHHHHHH
Q 038250 36 HFRCPISL-DLMKDPV---TLSTGITYDRENIEKWIHED----GNITCPV--TNRVLTSF---EPIPNHTIRRMIQDWCV 102 (444)
Q Consensus 36 ~~~Cpic~-~~~~~Pv---~~~cg~~~c~~ci~~~~~~~----~~~~CP~--c~~~~~~~---~l~~n~~l~~~i~~~~~ 102 (444)
...|.||. +.+...- +..|+|-||..|+.+++..+ ....||. |...+... .+.++ .++.+.+....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 46899999 3333212 34699999999999998422 2357877 55555433 23333 44455444444
Q ss_pred hc
Q 038250 103 EN 104 (444)
Q Consensus 103 ~~ 104 (444)
+.
T Consensus 225 e~ 226 (384)
T KOG1812|consen 225 EE 226 (384)
T ss_pred HH
Confidence 33
No 307
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.50 E-value=36 Score=35.88 Aligned_cols=173 Identities=10% Similarity=-0.044 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHhccCcccchhHh---hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccC
Q 038250 140 QAGCRDLVAKIKKWTKESDRNKRCIV---DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA 216 (444)
Q Consensus 140 ~~~~~~Al~~L~~l~~~~~~~~~~i~---~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~ 216 (444)
.+.+.=|+..||.+.++...+-..+- ....+..++..+. . ++..+..++++|. |+-.++-.+..+...
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~----~----~~an~ll~vR~L~-N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN----A----DPANQLLVVRCLA-NLFSNPAGRELFMSR 628 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc----c----chhHHHHHHHHHH-HhccCHHHHHHHHHH
Confidence 44566778888887776554433222 1224444444442 1 4667888999999 777777777766532
Q ss_pred --CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc----CCCChHHHHHHHHHHHHHhc
Q 038250 217 --SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK----EPICPTATKASLVVVYRTIT 290 (444)
Q Consensus 217 --g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~----~~~~~~~~~~a~~aL~~L~~ 290 (444)
-.+..++..=...+..++...+....|++-.--..... .|+.+-|...+. .-.+.++.-.++.||.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 22222222222234566666555566663111111111 244444444433 22234566778889999999
Q ss_pred CCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHH
Q 038250 291 SASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSV 329 (444)
Q Consensus 291 ~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~ 329 (444)
.+. ...++...=-|..+++-+++- +....+..+..
T Consensus 705 ~~~----~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 705 VDA----SVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred ccH----HHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 886 778887766788888888643 44444444433
No 308
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=82.70 E-value=0.85 Score=42.66 Aligned_cols=42 Identities=31% Similarity=0.629 Sum_probs=34.1
Q ss_pred cccccccccCc----CceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 37 FRCPISLDLMK----DPVTLSTGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 37 ~~Cpic~~~~~----~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
+.||||.+.+. +|..++|||+.-..|++... -.+ ++||.|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~-~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMI-CEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHh-ccC-CCCCcccc
Confidence 56999998865 46667999998889998877 344 99999976
No 309
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.18 E-value=21 Score=37.80 Aligned_cols=112 Identities=14% Similarity=0.082 Sum_probs=69.1
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcC-----CCChHHHHHHHhhcChhHHHHHHHHHHHHccccccc
Q 038250 308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNN-----SLIFPVIVKKILRVSDLATEFAVSILWKLCKNEERE 382 (444)
Q Consensus 308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-----~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~ 382 (444)
...++++|.+.+-.++-..+.+++|++.+-....+++.+ +..+..+++-+...++-.+..|+.++..++..+.-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk- 379 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK- 379 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-
Confidence 456777887776667766677777776532222223110 12344444545556888999999999998875321
Q ss_pred hHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH-HHHhhc
Q 038250 383 EKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK-LLNPHR 426 (444)
Q Consensus 383 ~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~-~l~~~~ 426 (444)
....+ ..++...+.-++.. +..+|++|..++. ++-+|.
T Consensus 380 ~~~~r-----~ev~~lv~r~lqDr-ss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 380 TVGRR-----HEVIRLVGRRLQDR-SSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ccchH-----HHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 12222 34555666677778 8899999998654 444443
No 310
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.10 E-value=1.1 Score=30.68 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=24.2
Q ss_pred cccccccccC--cCceec--CCcchhcHHHHHH
Q 038250 37 FRCPISLDLM--KDPVTL--STGITYDRENIEK 65 (444)
Q Consensus 37 ~~Cpic~~~~--~~Pv~~--~cg~~~c~~ci~~ 65 (444)
-.|++|.+.| .+.++. .||-.|.|.|..+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4899999999 677776 5999999999543
No 311
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=82.00 E-value=1.9 Score=36.49 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=34.4
Q ss_pred ccccccccccCcCceecCCcc-----hhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 36 HFRCPISLDLMKDPVTLSTGI-----TYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~-----~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
+..|=||.+--. +-.-+|.. ...+.|+++|+...+...|+.|+.++.
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 457889988754 33345543 347999999996667789999998775
No 312
>PHA02862 5L protein; Provisional
Probab=81.62 E-value=1.5 Score=36.48 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=34.2
Q ss_pred ccccccccCcCceecCCcc-----hhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 38 RCPISLDLMKDPVTLSTGI-----TYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~~cg~-----~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
.|=||.+.-.+.+ -+|.. -..+.|+++|+...++..||.|+.++.-
T Consensus 4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 6788888765553 35432 3578999999966677899999988753
No 313
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.54 E-value=12 Score=31.22 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=58.6
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH-HHHHHHHHHHHHHhhccC
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK-TKEHVSELLKLLNPHRAR 428 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~-~k~~a~~ll~~l~~~~~~ 428 (444)
+..|-+-|.+.++.++-.|+.+|-.+..+.+ .....++...+++..|..++....+.. +++++..++..-...-.+
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg---~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCG---SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 4556666777899999999999999988743 456667778999999999888875544 899988877777665543
No 314
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=81.49 E-value=42 Score=30.55 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhccCcccchhHhhc-CchHHHHHHHHh-h---cccccccc-hHHHHHHHHHHHhhcCCChhhhhhcccC
Q 038250 143 CRDLVAKIKKWTKESDRNKRCIVDN-GAVSVLAEAFET-F---SKTCLDEN-VSVLEEILSTLTLLFPLAGEGLTYLGSA 216 (444)
Q Consensus 143 ~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~-~---~~~~~~~~-~~~~~~a~~~L~~~l~~~~~~~~~i~~~ 216 (444)
+++|+.+|.+--+..+.-.-.+-.. |+.-.|++-.-+ + +.+..++. ..=...|+.+|. .+..+++.|..+.++
T Consensus 62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQ-claShPetk~~Fl~A 140 (315)
T COG5209 62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQ-CLASHPETKKVFLDA 140 (315)
T ss_pred HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHH-HHhcCcchheeeeec
Confidence 3448888877666666554444444 444444432211 1 11111111 223457778787 888899999988887
Q ss_pred CcHHHHHHHHh---cC--CHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 038250 217 SSMRCMVWFLK---SG--DLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTIT 290 (444)
Q Consensus 217 g~i~~Lv~lL~---~~--~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 290 (444)
..--.|-.+|. ++ ....+..+..+|+.|...++. .-..+ ....++|.++++++.+ ++-.+.-|+..+..+-.
T Consensus 141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fL-ltTeivPLcLrIme~g-SElSktvaifI~qkil~ 218 (315)
T COG5209 141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFL-LTTEIVPLCLRIMELG-SELSKTVAIFIFQKILG 218 (315)
T ss_pred ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHH-HhhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhc
Confidence 75444444443 22 366788899999999765543 33444 5578999999999988 45555555555554444
Q ss_pred CCCCCCchhHHHH----hcCcH----HHHHHH-hhccccchHHHHHHHHHHhcCChhhHHHH
Q 038250 291 SASATEKPIQKFV----DMGLV----SLLLEM-LVDAQRSLCEKALSVLDGLCSSDYGRGDA 343 (444)
Q Consensus 291 ~~~~~~~~~~~i~----~~g~v----~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i 343 (444)
++. .-+.+. +=-+| ..++.- .+.+...+.+.++..-..|+..++.|+.+
T Consensus 219 dDv----GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 219 DDV----GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred cch----hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 432 222221 11222 223322 23456778888888888888888877765
No 315
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.94 E-value=21 Score=37.98 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=69.3
Q ss_pred cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCCh
Q 038250 259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~ 337 (444)
.++|..|++.--++.+.+++++|.-+|..++..+. ..++..|++|++. ++.++-.++.+|..-|...
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecCh------------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 45677788774344478899999999998877664 2467778888754 8889999999999888766
Q ss_pred hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHc
Q 038250 338 YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLC 376 (444)
Q Consensus 338 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 376 (444)
-.+..+ ..+++|++ ....-+++.|+-++..+.
T Consensus 621 G~~eAi----~lLepl~~---D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 621 GLKEAI----NLLEPLTS---DPVDFVRQGALIALAMIM 652 (929)
T ss_pred CcHHHH----HHHhhhhc---ChHHHHHHHHHHHHHHHH
Confidence 666666 23333332 334557777777776643
No 316
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=80.91 E-value=10 Score=31.80 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=59.2
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH---HHHHHHHHHHHHHhhc
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK---TKEHVSELLKLLNPHR 426 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~---~k~~a~~ll~~l~~~~ 426 (444)
+..|.+-|...++.++..|+.+|-.+..+.+ .....++.....+..|..++....... +|+++..++.......
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg---~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCG---PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH---HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4566677777899999999999999998743 456666668889999999888765555 8999988888777655
Q ss_pred c
Q 038250 427 A 427 (444)
Q Consensus 427 ~ 427 (444)
.
T Consensus 121 ~ 121 (140)
T PF00790_consen 121 K 121 (140)
T ss_dssp T
T ss_pred C
Confidence 3
No 317
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.78 E-value=7.2 Score=30.17 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=52.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 263 ~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
...+..+.++ .+.++..++..|+.|..... ...+-..+++..++..|.+.++-+--+|+..|..|+.
T Consensus 6 ~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~-----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 6 QEALSDLNDP-LPPVRAHGLVLLRKLIESKS-----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHccCC-CcchHHHHHHHHHHHHHcCC-----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3445566777 68899999999999998752 2223335678888888999999999999999999986
No 318
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=80.76 E-value=65 Score=35.10 Aligned_cols=250 Identities=16% Similarity=0.069 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhcc-CcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHH
Q 038250 142 GCRDLVAKIKKWTKE-SDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMR 220 (444)
Q Consensus 142 ~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~ 220 (444)
....+......++.. +...+..+...-.+|.+-.+..+. +..++...+..........+ +..- -.-.+|
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~-------~~~vr~a~a~~~~~~~p~~~--k~~t-i~~llp 440 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN-------ALHVRSALASVITGLSPILP--KERT-ISELLP 440 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-------cchHHHHHhccccccCccCC--cCcC-ccccCh
Confidence 333344444455433 223345566666667766666321 34455444443331111111 1111 134467
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250 221 CMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPI 299 (444)
Q Consensus 221 ~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~ 299 (444)
.++..++...++++.+-.+.+..+-...+ .....+ ....+|.++.+-... ...++.+..+.+..++... -
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~--s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~------~ 511 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV--SNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQL------G 511 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh--hhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhh------h
Confidence 77777777888998888876655522222 223333 356788888887776 6778888888888887654 2
Q ss_pred HHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHH---HHHHHHHHHHc
Q 038250 300 QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLAT---EFAVSILWKLC 376 (444)
Q Consensus 300 ~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~---~~a~~~L~~L~ 376 (444)
..+.+....+.+..-|.+..-.++++|+..|..++.--. ...- ..-.++.++.....++-..+ -.++..|..+.
T Consensus 512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~ 588 (759)
T KOG0211|consen 512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL 588 (759)
T ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence 344443344444444445556788888888888775221 1111 11234555554433222222 33333333333
Q ss_pred cccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 377 KNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 377 ~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
. .++...-.++.+..+.... .+.+|-+++..|..+.+
T Consensus 589 g----------~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 589 G----------QEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILK 625 (759)
T ss_pred c----------cHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHh
Confidence 3 2223345666666666555 77777777776666554
No 319
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=80.55 E-value=0.92 Score=40.08 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=36.0
Q ss_pred cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250 37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRV 81 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~ 81 (444)
..|.+|..+...-+.. +||-.|.+.|++.|+ +....||.|+--
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~--q~~~~cphc~d~ 225 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYL--QRRDICPHCGDL 225 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHh--cccCcCCchhcc
Confidence 4899999999988776 688889999999999 336789999643
No 320
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.48 E-value=73 Score=35.72 Aligned_cols=234 Identities=16% Similarity=0.172 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHhhccc----CChhH----HHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhccccc---c-cc
Q 038250 121 SVEVFEINCNITTACKS----EDQAG----CRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCL---D-EN 188 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~----~~~~~----~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~---~-~~ 188 (444)
-+.+-.++..|.+..-. +.-+. ...-+.++++...-+-..+..+.++||...|...|-.+.. .+ + .|
T Consensus 719 hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqg-ftelhdesD 797 (2799)
T KOG1788|consen 719 HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQG-FTELHDESD 797 (2799)
T ss_pred HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhcc-chhcCCchh
Confidence 35566777777763211 11112 2233455666665566678899999999999888854321 10 0 12
Q ss_pred hHHHH----HHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcchhhHHHhhccccc
Q 038250 189 VSVLE----EILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGD---LSRRRNAVLVLREIVSSDHRKVNVLLDIEGA 261 (444)
Q Consensus 189 ~~~~~----~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~ 261 (444)
.-+.- ...+.....++.++.|+..+...-.-..+..+|+... .+...+....|..+
T Consensus 798 lcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllEl----------------- 860 (2799)
T KOG1788|consen 798 LCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLEL----------------- 860 (2799)
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHH-----------------
Confidence 21211 2222222233456667765543333444445543221 11111111111111
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhc---------CCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHH
Q 038250 262 IEPLFKLIKEPICPTATKASLVVVYRTIT---------SASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDG 332 (444)
Q Consensus 262 i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~---------~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 332 (444)
-.+.+-.+ ....-..|+..+..+-. +.. ...+..|..+|++..|+..+-...+.++-.-+.+|..
T Consensus 861 ---alevlvpp-fLtSEsaAcaeVfelednifavntPsGqf--npdk~~iynagavRvlirslLlnypK~qlefl~lleS 934 (2799)
T KOG1788|consen 861 ---ALEVLVPP-FLTSESAACAEVFELEDNIFAVNTPSGQF--NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLES 934 (2799)
T ss_pred ---HHHhhCCc-hhhhhHHHHHHHhhcccceeeeccCCCCc--CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHH
Confidence 11112112 11122223333333311 111 1247788999999999999999999999999999999
Q ss_pred hcCChhhHHHHhcCCCChHHHHHHHh---hcChhHHHHHHHHHHHHccc
Q 038250 333 LCSSDYGRGDAYNNSLIFPVIVKKIL---RVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 333 L~~~~~~~~~i~~~~g~i~~Lv~ll~---~~~~~~~~~a~~~L~~L~~~ 378 (444)
++..+..........|+++.|++++. +++...-.++.+++..|+..
T Consensus 935 laRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 935 LARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred HhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 99866555555478899999999875 34555666777777777654
No 321
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.38 E-value=1.9 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=27.7
Q ss_pred CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHH
Q 038250 54 TGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTI 93 (444)
Q Consensus 54 cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l 93 (444)
=.+|||..|.+..+ ...||-|+-.+..+...|-..|
T Consensus 27 fEcTFCadCae~~l----~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 27 FECTFCADCAENRL----HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EeeehhHhHHHHhh----cCcCCCCCchhhcCcCChHHHH
Confidence 35799999998766 4579999988887777775433
No 322
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.29 E-value=70 Score=32.37 Aligned_cols=187 Identities=11% Similarity=0.051 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
..+..++..++.+ +..+.+..|+..|..+..++...-+.=.-.-.+-.+++.|+. . ++......|+++|..
T Consensus 286 ~~v~~~l~~~~g~---e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d---~---~~~~~k~laLrvL~~ 356 (516)
T KOG2956|consen 286 ALVADLLKEISGS---ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSD---S---EDEIIKKLALRVLRE 356 (516)
T ss_pred HHHHHHHHhccCc---cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHcc---c---hhhHHHHHHHHHHHH
Confidence 3445555555554 355678889998988877764332221112234455666632 1 257788999999997
Q ss_pred hcCCChhhhhhccc--CCcHHHHHHHHhcCCHHHHHHHHH-HHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250 202 LFPLAGEGLTYLGS--ASSMRCMVWFLKSGDLSRRRNAVL-VLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT 278 (444)
Q Consensus 202 ~l~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~-~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 278 (444)
+|...+. .+.+ .-+|..+++.-...++++...|.. ++.-+++.++..+-.. +.|.++. . +.+.-
T Consensus 357 ml~~Q~~---~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~-----i~~~Ilt----~-D~~~~ 423 (516)
T KOG2956|consen 357 MLTNQPA---RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN-----ISPLILT----A-DEPRA 423 (516)
T ss_pred HHHhchH---hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH-----HhhHHhc----C-cchHH
Confidence 6655442 1211 123444444444445555544444 4555555555433222 1233222 3 33333
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 279 KASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 279 ~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
-.++..+..|+..-. +..+.. ....|.+++--.+.+..+++.|+-.|-.+..
T Consensus 424 ~~~iKm~Tkl~e~l~-----~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 424 VAVIKMLTKLFERLS-----AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHHHHHHHhhcC-----HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 344555556655432 222222 3577888888877788888888888777653
No 323
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.97 E-value=13 Score=30.89 Aligned_cols=78 Identities=19% Similarity=0.093 Sum_probs=60.0
Q ss_pred ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhc
Q 038250 349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV--GCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~--~~~~~~k~~a~~ll~~l~~~~ 426 (444)
++..|-+-|..+++.++..|+.+|-.+..+.+ .....++.....+..|+.++.. ..++.+|+++..++.......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg---~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCG---KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC---hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35566677777899999999999999998743 3455556566888889998876 457899999999888887765
Q ss_pred cCC
Q 038250 427 ARL 429 (444)
Q Consensus 427 ~~~ 429 (444)
.+.
T Consensus 115 ~~~ 117 (133)
T cd03561 115 GGH 117 (133)
T ss_pred cCC
Confidence 543
No 324
>PF14353 CpXC: CpXC protein
Probab=79.75 E-value=1.2 Score=36.80 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=32.8
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCC---CCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGN---ITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~---~~CP~c~~~~~ 83 (444)
.+||-|+..+.-.+-+.-.-..-..-.++.+ .|. ++||.|+..+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il--~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKIL--DGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHH--cCCcCEEECCCCCCcee
Confidence 6899999999988766555555555666666 443 68999997765
No 325
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=79.42 E-value=1.1 Score=29.82 Aligned_cols=40 Identities=30% Similarity=0.647 Sum_probs=23.2
Q ss_pred cccccccCcC--ceecCCcc-----hhcHHHHHHHHHhcCCCCCCCC
Q 038250 39 CPISLDLMKD--PVTLSTGI-----TYDRENIEKWIHEDGNITCPVT 78 (444)
Q Consensus 39 Cpic~~~~~~--Pv~~~cg~-----~~c~~ci~~~~~~~~~~~CP~c 78 (444)
|=||.+.-.+ |.+.+|+. -..+.|+++|+..++...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 3455555332 55666642 3467899999976778889887
No 326
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=78.68 E-value=67 Score=31.24 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=110.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh-cchh-hHHHhhcccccHHHHHHHhcCC----CC--------hHHHHHHHHH
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVS-SDHR-KVNVLLDIEGAIEPLFKLIKEP----IC--------PTATKASLVV 284 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s-~~~~-~~~~i~~~~g~i~~Lv~ll~~~----~~--------~~~~~~a~~a 284 (444)
++.+...|.+........+...|..+.+ .... .++.+..-.--.+.|.+++... .+ +.++.....-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7777788888777777888889999966 3323 3444422223455666776421 01 2677777777
Q ss_pred HHHHhcCCCCCCchhHHHHh-cCcHHHHHHHhhccccchHHHHHHHHHH-hcCCh----hhHHHHhcCCCChHHHHHHHh
Q 038250 285 VYRTITSASATEKPIQKFVD-MGLVSLLLEMLVDAQRSLCEKALSVLDG-LCSSD----YGRGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~----~~~~~i~~~~g~i~~Lv~ll~ 358 (444)
+..+....+ ...+..+.+ .+.+..+.+-|..++.+++...+.+|.. +...+ ..+..+ .+...+..|+.+..
T Consensus 138 ~Lsfl~~~~--~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~-fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 138 WLSFLSSGD--PELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKL-FNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHccCC--HHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhh-cCHHHHHHHHHHhc
Confidence 777666544 346777665 5678889999988888999999999984 44433 234445 67788999999666
Q ss_pred hcCh----hHHHHHHHHHHHHccccc
Q 038250 359 RVSD----LATEFAVSILWKLCKNEE 380 (444)
Q Consensus 359 ~~~~----~~~~~a~~~L~~L~~~~~ 380 (444)
...+ .+.+.+-..|..+|..+.
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 6566 788999999999997543
No 327
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=78.53 E-value=8.9 Score=35.63 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=62.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCCCCCC
Q 038250 218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-ICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
+|..|+.-|..++.-.|..++.+++.| . + .-.||.|.+.|.+. .++-++..|+.||..++..+
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl-~-s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~---- 251 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQL-Q-S----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED---- 251 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhc-c-c----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH----
Confidence 355555555555666666666666666 1 1 22356667666543 35788999999998887543
Q ss_pred chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250 297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 334 (444)
+++.|.+.+.+.++-+++.|.-+|..+-
T Consensus 252 ----------~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 252 ----------CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ----------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888877653
No 328
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=78.34 E-value=92 Score=32.60 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=74.8
Q ss_pred CcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHH
Q 038250 306 GLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKT 385 (444)
Q Consensus 306 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 385 (444)
|.+..++.-+.+.+..++..++.+|+.+..+-...... .-.|.+..|.+-+....+.++..|+.+|..+-..+. +++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~--nee 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL--NEE 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC--ChH
Confidence 56666666667778889999999999887644333344 334666677666665667788888888766554321 233
Q ss_pred HHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCC
Q 038250 386 AFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECI 432 (444)
Q Consensus 386 ~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~~ 432 (444)
+. ++..|+.+++.+++.++|+.| +++ +...-.-.|||
T Consensus 168 n~-------~~n~l~~~vqnDPS~EVRr~a--lln-i~vdnsT~p~I 204 (885)
T COG5218 168 NR-------IVNLLKDIVQNDPSDEVRRLA--LLN-ISVDNSTYPCI 204 (885)
T ss_pred HH-------HHHHHHHHHhcCcHHHHHHHH--HHH-eeeCCCcchhH
Confidence 32 335778899999888888875 333 33344445666
No 329
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=78.14 E-value=56 Score=34.10 Aligned_cols=189 Identities=12% Similarity=0.010 Sum_probs=113.0
Q ss_pred hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--
Q 038250 227 KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD-- 304 (444)
Q Consensus 227 ~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~-- 304 (444)
.+-++.+|..+...|+--...-|++-..+ .++.+.-.+|.+. +..++.....+|..|+.+.. +...+.+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~----~~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p----~~d~ir~f~ 355 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRKI----LGLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIP----HTDAIRRFV 355 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHhh----hcccccccccccc-hHHHHHHHHHHHHHHHhcCC----cchHHHHHH
Confidence 33456777777777776655555554444 3688888888877 78999999999999999987 5543322
Q ss_pred cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchH
Q 038250 305 MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEK 384 (444)
Q Consensus 305 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~ 384 (444)
.-.-..+++++..+..-++..+..++..|.... ..+...|-.+..+|....++.++.-...+.++|.. ..
T Consensus 356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~----~a 425 (740)
T COG5537 356 ERFKDRILEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICKI----DA 425 (740)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----HH
Confidence 235566788887664447877877777664321 23444455555667766666666667777788873 23
Q ss_pred HHHHHHH-hhChHHHHHHHHhcCC---ChHHHHHHHHHHHHHHhhccCCCCCCcc
Q 038250 385 TAFAEAL-QVGAFQKLLLLLQVGC---ADKTKEHVSELLKLLNPHRARLECIDSM 435 (444)
Q Consensus 385 ~~~~~~~-~~g~l~~Ll~ll~~~~---~~~~k~~a~~ll~~l~~~~~~~~~~~~~ 435 (444)
+.+.+-+ ..+--..++..+..+. -...-..-.+.+.++.... ++.|.+.|
T Consensus 426 evikEKipl~~k~n~lL~a~~qgse~~f~v~~~iFsr~~~llk~v~-ls~easvy 479 (740)
T COG5537 426 EVIKEKIPLATKTNRLLEAMKQGSERYFVVCEEIFSRFVHLLKKVE-LSFEASVY 479 (740)
T ss_pred HHHHhhcchhhhhhhHHHHHHhhhhccchhHHHHHHHHHHHHHHHH-Hhhhhhhh
Confidence 3444322 2332234444444441 2223344444555555443 34454443
No 330
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=78.09 E-value=30 Score=30.50 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcc------------------cccHHHHHHHhcCCCChHHHHHH
Q 038250 220 RCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDI------------------EGAIEPLFKLIKEPICPTATKAS 281 (444)
Q Consensus 220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~------------------~g~i~~Lv~ll~~~~~~~~~~~a 281 (444)
+.+.-++.+.++.+|..|+.+|..|-.+...+-....+. ...=..|+..|+.+.+.......
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 333344555567777777777777643332111111000 12223455666666677888899
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHH----HhhccccchHHHHHHHHHHhcCC
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLE----MLVDAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~----lL~~~~~~~~~~a~~~L~~L~~~ 336 (444)
+.+|..|..... -++- +.|.++.++. ++.+.|..++..++.++..|...
T Consensus 123 lK~la~Lv~~tP---Y~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 123 LKCLAVLVQATP---YHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHccCC---hhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 999999998865 2222 3455555554 44577899999999999988763
No 331
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=76.96 E-value=79 Score=34.77 Aligned_cols=175 Identities=13% Similarity=0.103 Sum_probs=107.3
Q ss_pred hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHH--Hh
Q 038250 227 KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKF--VD 304 (444)
Q Consensus 227 ~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i--~~ 304 (444)
.+.+..-+..|+..+....+... ....-...|.+..+.+....+.+..+...++..|..|+..-. ..+ ..
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr------~~~~~~~ 334 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR------PLFRKYA 334 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc------hhhHHHH
Confidence 45567777777777777644332 222212346666677766666578889999999999987643 222 23
Q ss_pred cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchH
Q 038250 305 MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEK 384 (444)
Q Consensus 305 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~ 384 (444)
.++.+.+++-+.+....+++.++.++...+... .-.-.++.+...+.++++..+..+...|.........
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--- 404 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--- 404 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC---
Confidence 468899999998888888888888887766511 1122355666667777888887776666665543221
Q ss_pred HHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250 385 TAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK 420 (444)
Q Consensus 385 ~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~ 420 (444)
.....---.+.++.++...... +..+|..|...+.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~ 439 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVA 439 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHH
Confidence 1111111134555555544444 6777777776433
No 332
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.71 E-value=3.4 Score=38.25 Aligned_cols=44 Identities=14% Similarity=0.329 Sum_probs=34.7
Q ss_pred CCccccccccccCcCceecCC----cchhcHHHHHHHHHhcC---CCCCCC
Q 038250 34 PNHFRCPISLDLMKDPVTLST----GITYDRENIEKWIHEDG---NITCPV 77 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~c----g~~~c~~ci~~~~~~~~---~~~CP~ 77 (444)
...++|-+|.+-++|-..+.| .|.||-.|-.+.+++++ ...||.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 444899999999999866655 69999999999987654 356775
No 333
>PLN02436 cellulose synthase A
Probab=76.70 E-value=2.6 Score=46.63 Aligned_cols=46 Identities=22% Similarity=0.402 Sum_probs=35.5
Q ss_pred cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||++-.- +|.+. .||.-.|+.|.+ |-..+|+..||.|+....
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 49999998753 45544 589889999985 443678899999987665
No 334
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.70 E-value=7.9 Score=40.85 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=76.5
Q ss_pred CcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHH
Q 038250 306 GLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKT 385 (444)
Q Consensus 306 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 385 (444)
|.+..|++-..+.+..++-+++.+|..|.......... +-.+....+..-+....+.++-.|+.+|..+=.... ++
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~-vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~--de- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDD-VFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK--DE- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHH-HHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC--CC-
Confidence 45555555566678889999999999998743333333 223455555555555677888889888877764322 12
Q ss_pred HHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCC
Q 038250 386 AFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECI 432 (444)
Q Consensus 386 ~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~~ 432 (444)
+..++..++.+++.++++++|+.| |.++.....-.|||
T Consensus 161 ------e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~I 198 (892)
T KOG2025|consen 161 ------ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCI 198 (892)
T ss_pred ------cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhH
Confidence 245677889999999999999875 45555555566676
No 335
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=76.26 E-value=97 Score=31.78 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=58.2
Q ss_pred cHHHHHHHhhc--cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc------ChhHHHHHHHHHHHHccc
Q 038250 307 LVSLLLEMLVD--AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV------SDLATEFAVSILWKLCKN 378 (444)
Q Consensus 307 ~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~a~~~L~~L~~~ 378 (444)
.++.++..|.. +.....+.+..++.||++...++..+ ..|..+|.+. +..+..-|+.+|..+.-.
T Consensus 214 sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i-------~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 214 SLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAI-------RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred HHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHH-------HHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 34455666642 34477888999999999877666655 3566666322 223445677777766553
Q ss_pred cccchHHHHHHHH-hh--ChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 379 EEREEKTAFAEAL-QV--GAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 379 ~~~~~~~~~~~~~-~~--g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
.+ +.....+ -. -+++.|...|+.+.+...-+.-..+.+++
T Consensus 287 ~~----~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 287 SG----EQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cc----cCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 21 1111112 12 26777777787663333333333344444
No 336
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=74.75 E-value=19 Score=38.12 Aligned_cols=134 Identities=13% Similarity=0.121 Sum_probs=92.0
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
..++|.|..-++..+..+|+.++..+..++..-| -..+ ..-++|.|-.+.....+..++.+++.++..+...-+
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~v--k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-- 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFV--KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-- 461 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHH--HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--
Confidence 3456666666667788999999999998853322 2222 345678877776555578899999999999884332
Q ss_pred CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS 361 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~ 361 (444)
+..+++ -+.++.+.....++.++-..+.+..++....-+...+ ....++|.++.+..+..
T Consensus 462 ---~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev-~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 ---KAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV-MAENVLPLLIPLSVAPS 521 (700)
T ss_pred ---HHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee-ehhhhhhhhhhhhhccc
Confidence 444444 4666777777778888888888888887644433334 45678888888766554
No 337
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.72 E-value=7.7 Score=39.86 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=46.7
Q ss_pred cCcHHHHHHH-hhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHcccc
Q 038250 305 MGLVSLLLEM-LVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCKNE 379 (444)
Q Consensus 305 ~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~ 379 (444)
.|+|..|+.. +++++.+++..|+.+|.-+|. .+...++..|++|..+ +.-++...+-+|..-|..+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~---------~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC---------DDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEe---------cCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 4677777777 567788999999999998876 3445556666766554 6677766666777666644
No 338
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=74.71 E-value=13 Score=39.66 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=83.9
Q ss_pred cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCC---CChHHHHHHHHHHHHHhc
Q 038250 215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEP---ICPTATKASLVVVYRTIT 290 (444)
Q Consensus 215 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~~ 290 (444)
...++..+.+++.++..... .|+.+|..|.... ....+. +..+..|++.+ .++.+...|+-++..|..
T Consensus 393 T~~av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e~-------l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~ 464 (618)
T PF01347_consen 393 TNPAVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEEL-------LKELFELAKSPKVKNSPYLRETALLSLGSLVH 464 (618)
T ss_dssp SHHHHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HHH-------HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHHH-------HHHHHHHHhCccccCChhHHHHHHHHHHHHhC
Confidence 45568888888887644333 3556666663322 223333 34455555432 245677777777776643
Q ss_pred CCCCC------CchhHHHHhcCcHHHHHHHhh----ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250 291 SASAT------EKPIQKFVDMGLVSLLLEMLV----DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 291 ~~~~~------~~~~~~i~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~ 360 (444)
..-.+ .......+....++.|...|. .++...+..++.+|+|+-. ...++.|...+...
T Consensus 465 ~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~ 533 (618)
T PF01347_consen 465 KYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGK 533 (618)
T ss_dssp HHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTS
T ss_pred ceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhc
Confidence 31100 001122233456777777776 2355667788899998743 23556666655544
Q ss_pred ---ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 361 ---SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 361 ---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
+..++-.|+.+|..++...+ .-+.+.|+.++.+.
T Consensus 534 ~~~~~~~R~~Ai~Alr~~~~~~~------------~~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 534 EEVPHFIRVAAIQALRRLAKHCP------------EKVREILLPIFMNT 570 (618)
T ss_dssp S-S-HHHHHHHHHTTTTGGGT-H------------HHHHHHHHHHHH-T
T ss_pred cccchHHHHHHHHHHHHHhhcCc------------HHHHHHHHHHhcCC
Confidence 45667778888777655422 23345677766665
No 339
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.53 E-value=39 Score=36.71 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=90.2
Q ss_pred hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh-h---------
Q 038250 269 IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD-Y--------- 338 (444)
Q Consensus 269 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~--------- 338 (444)
+.++ .+.++..++..|+.+..... .+..+...+++...++.|.+.+.-+--+|...+..||.-- +
T Consensus 736 l~d~-qvpik~~gL~~l~~l~e~r~----~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~ 810 (982)
T KOG4653|consen 736 LHDD-QVPIKGYGLQMLRHLIEKRK----KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEE 810 (982)
T ss_pred hcCC-cccchHHHHHHHHHHHHhcc----hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3344 46789999999999988654 6777778899999999999999888888888666666421 1
Q ss_pred -----------hHHHH-------hcCCC-----ChHHHHHHHhhc----ChhHHHHHHHHHHHHccccccchHHHHHHHH
Q 038250 339 -----------GRGDA-------YNNSL-----IFPVIVKKILRV----SDLATEFAVSILWKLCKNEEREEKTAFAEAL 391 (444)
Q Consensus 339 -----------~~~~i-------~~~~g-----~i~~Lv~ll~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 391 (444)
.+-.+ +...| -...|+....++ +..-+..+++.|++||..... .... .
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~----~vsd-~ 885 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF----QVSD-F 885 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh----hhhH-H
Confidence 01111 00011 111222222222 223356777788888874321 1111 1
Q ss_pred hhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 392 QVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 392 ~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
=..++..++.+.+.+.+.-+|+.|+-++..+-
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 13455677777777867888888888776654
No 340
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=74.42 E-value=25 Score=29.47 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=58.6
Q ss_pred ChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc-----CCChHHHHHHHHHHHHHH
Q 038250 349 IFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV-----GCADKTKEHVSELLKLLN 423 (444)
Q Consensus 349 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~-----~~~~~~k~~a~~ll~~l~ 423 (444)
++..+.+-|.+.++.++-.|+.+|-.+..+.+ .....++...+++..|+.++.. .....+|++...++..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCG---ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC---HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35566677777888999999999999988643 4566677789999999999963 236799999988888777
Q ss_pred hhcc
Q 038250 424 PHRA 427 (444)
Q Consensus 424 ~~~~ 427 (444)
....
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 6544
No 341
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.29 E-value=43 Score=27.41 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=52.0
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhc-----C--CChHHHHHHHHHHHH
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQV-----G--CADKTKEHVSELLKL 421 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~-----~--~~~~~k~~a~~ll~~ 421 (444)
+..|.+-|...++.++..++++|-.||.. |++..+..+. ..-.|..+.++-.. | ....+|..|..++.+
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~---G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEK---GNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhh---CCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 45677777777888999999999999998 5577777777 56666666665441 1 125688888888887
Q ss_pred HH
Q 038250 422 LN 423 (444)
Q Consensus 422 l~ 423 (444)
+-
T Consensus 117 if 118 (122)
T cd03572 117 IF 118 (122)
T ss_pred Hh
Confidence 74
No 342
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.01 E-value=44 Score=28.74 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=79.9
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD 248 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~ 248 (444)
.++.|.++|+.. . +..++.+++++|+ ++..=+..+....+.+ .+.-. -...+........ .........
T Consensus 11 LL~~L~~iLk~e--~----s~~iR~E~lr~lG-ilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~~~l-~~~~~~~~~ 79 (160)
T PF11865_consen 11 LLDILLNILKTE--Q----SQSIRREALRVLG-ILGALDPYKHKSIQKS-LDSKS--SENSNDESTDISL-PMMGISPSS 79 (160)
T ss_pred HHHHHHHHHHhC--C----CHHHHHHHHHHhh-hccccCcHHHhccccc-CCccc--cccccccchhhHH-hhccCCCch
Confidence 356677777532 2 5889999999999 5554444443322111 00000 0011111111111 111121122
Q ss_pred hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHH
Q 038250 249 HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALS 328 (444)
Q Consensus 249 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~ 328 (444)
+++-.. .++..|+++|+++.-......+..++.++...-. ..+..... -++|.++..++..+...+|..+.
T Consensus 80 ee~y~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~---~~cv~~L~-~viP~~l~~i~~~~~~~~e~~~~ 150 (160)
T PF11865_consen 80 EEYYPT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLG---LKCVPYLP-QVIPIFLRVIRTCPDSLREFYFQ 150 (160)
T ss_pred HHHHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC---cCchhHHH-HHhHHHHHHHHhCCHHHHHHHHH
Confidence 333322 4578899999987434555577888888875532 12333333 48999999999777788887777
Q ss_pred HHHHhc
Q 038250 329 VLDGLC 334 (444)
Q Consensus 329 ~L~~L~ 334 (444)
-|..|.
T Consensus 151 qL~~lv 156 (160)
T PF11865_consen 151 QLADLV 156 (160)
T ss_pred HHHHHH
Confidence 666654
No 343
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.68 E-value=51 Score=35.86 Aligned_cols=179 Identities=11% Similarity=0.118 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF 203 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l 203 (444)
..+.+..+.+. -...+..|+..|+.+.... .....+...+++....+.|+. +|+-+.-.|+..+..++
T Consensus 729 ~qeai~sl~d~----qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkd-------edsyvyLnaI~gv~~Lc 796 (982)
T KOG4653|consen 729 LQEAISSLHDD----QVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKD-------EDSYVYLNAIRGVVSLC 796 (982)
T ss_pred HHHHHHHhcCC----cccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcc-------cCceeeHHHHHHHHHHH
Confidence 44455555443 4567889999999998754 456677778888888899952 25667777777555222
Q ss_pred CCChhhhhhcccCCcHHHHHH-HHhcCC---HHHHHHHHHHHHHHHhc-ch---hhHHHhhcccccHHHHHHHhcCCCCh
Q 038250 204 PLAGEGLTYLGSASSMRCMVW-FLKSGD---LSRRRNAVLVLREIVSS-DH---RKVNVLLDIEGAIEPLFKLIKEPICP 275 (444)
Q Consensus 204 ~~~~~~~~~i~~~g~i~~Lv~-lL~~~~---~~~~~~A~~~L~~L~s~-~~---~~~~~i~~~~g~i~~Lv~ll~~~~~~ 275 (444)
.. .....+|.|.. ..+..+ .+.+-..=.++.+++-. .+ .++.. .+......++++ +.
T Consensus 797 ev--------y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~------Li~tfl~gvrep-d~ 861 (982)
T KOG4653|consen 797 EV--------YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAV------LINTFLSGVREP-DH 861 (982)
T ss_pred Hh--------cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHH------HHHHHHHhcCCc-hH
Confidence 22 33455777776 333221 12222222444444211 11 22222 234455556655 56
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhh-ccccchHHHHHHHHHHhcC
Q 038250 276 TATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLV-DAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 276 ~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~ 335 (444)
..+..+++.+++||.-.. ..+.+ ..++..++.+.. +++..++..|+.+|..+-.
T Consensus 862 ~~RaSS~a~lg~Lcq~~a------~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 862 EFRASSLANLGQLCQLLA------FQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHhHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 678899999999987542 11111 224555555555 4466778888888877655
No 344
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.47 E-value=81 Score=29.59 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=127.1
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
+|...+.+|+..|......-+... ....-+..|++++.+.-+ |......++..+..++.... +. .+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~-----D~~~~~~~l~gl~~L~~~~~-----~~-~~ 76 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD-----DHACVQPALKGLLALVKMKN-----FS-PE 76 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc-----cHhhHHHHHHHHHHHHhCcC-----CC-hh
Confidence 478889999999998877655322 223336778877743211 33344444555553433222 11 11
Q ss_pred cHHHHHHH-HhcC-----CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 218 SMRCMVWF-LKSG-----DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 218 ~i~~Lv~l-L~~~-----~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
....++.- .+.- ....|.....+|..|.....+.-..++ .+.+..+++++..+.||.....+...+..+...
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 13333332 2221 355677788888888655444445552 478999999999888999999888888887765
Q ss_pred CCCCCchhHHHHhcCcHHHHHHHhhc----------ccc--chHHHHHHHHHH-hcCChhhHHHHhcCCCChHHHHHHHh
Q 038250 292 ASATEKPIQKFVDMGLVSLLLEMLVD----------AQR--SLCEKALSVLDG-LCSSDYGRGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 292 ~~~~~~~~~~i~~~g~v~~Lv~lL~~----------~~~--~~~~~a~~~L~~-L~~~~~~~~~i~~~~g~i~~Lv~ll~ 358 (444)
-+ . ...++-+.+.+.. +++ -.++.-...|.+ |+..+. -. .-++|.|++-|.
T Consensus 155 ~~----~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-fa-----~~~~p~LleKL~ 218 (262)
T PF14500_consen 155 FD----I------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-FA-----PFAFPLLLEKLD 218 (262)
T ss_pred cc----c------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-hH-----HHHHHHHHHHHc
Confidence 43 1 3345566666641 122 234444444444 333222 11 246899999998
Q ss_pred hcChhHHHHHHHHHHHHccc
Q 038250 359 RVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 359 ~~~~~~~~~a~~~L~~L~~~ 378 (444)
+++..++..++.+|...+..
T Consensus 219 s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 219 STSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 88888999999999887664
No 345
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=73.45 E-value=0.13 Score=37.19 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=22.5
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
++.||.|...|.. .-|+-+|..|-..|. ....||.|++++.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~---~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYK---KEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEE---EEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECccccccce---ecccCCCcccHHH
Confidence 3689999988653 237888888866543 3457999998875
No 346
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.18 E-value=77 Score=36.84 Aligned_cols=131 Identities=14% Similarity=0.150 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHH
Q 038250 234 RRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLE 313 (444)
Q Consensus 234 ~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~ 313 (444)
...|.++...|+ ...+....+ .+.+..++..|.++ ...++..|+.+|.++..-+. .-.....++.| +-.
T Consensus 794 ~~~a~li~~~la-~~r~f~~sf---D~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~----Vh~ 862 (1692)
T KOG1020|consen 794 DDDAKLIVFYLA-HARSFSQSF---DPYLKLILSVLGEN-AIALRTKALKCLSMIVEADP--SVLSRPDVQEA----VHG 862 (1692)
T ss_pred chhHHHHHHHHH-hhhHHHHhh---HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHH----HHH
Confidence 356777777774 344445555 47788888889877 68899999999999988765 11222233333 333
Q ss_pred HhhccccchHHHHHHHHHHhc-CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcccccc
Q 038250 314 MLVDAQRSLCEKALSVLDGLC-SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEER 381 (444)
Q Consensus 314 lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~ 381 (444)
-+.+.+..+++.|+.+++.-. ..++.-.+. -..+.+-+...+-.+++.++++|..+|...|+
T Consensus 863 R~~DssasVREAaldLvGrfvl~~~e~~~qy------Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 863 RLNDSSASVREAALDLVGRFVLSIPELIFQY------YDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred hhccchhHHHHHHHHHHhhhhhccHHHHHHH------HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 445667889999999998543 333333333 11233333445667889999999999987765
No 347
>PLN02189 cellulose synthase
Probab=72.97 E-value=2.3 Score=46.94 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=35.4
Q ss_pred cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||++-.. +|... .||.-.|+.|.+ |-..+|+..||.|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 49999999755 45443 588889999985 443678899999987665
No 348
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.47 E-value=46 Score=35.12 Aligned_cols=142 Identities=17% Similarity=0.234 Sum_probs=76.8
Q ss_pred ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCC---CChHHHHHHHHHHHHHh
Q 038250 214 GSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEP---ICPTATKASLVVVYRTI 289 (444)
Q Consensus 214 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~ 289 (444)
+...++..+.+++.++..... .|+.++..+.... ....+. +..+..+++++ .++.+...|.-++.+|.
T Consensus 354 GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~~~-------l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 354 GTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPTEEI-------LKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCCHHH-------HHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 345578888888887753322 2333333331111 122333 34566666643 23556666676666665
Q ss_pred c----CCCCCCchhHHHHhcCcHHHHHHHhhc----cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh--
Q 038250 290 T----SASATEKPIQKFVDMGLVSLLLEMLVD----AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR-- 359 (444)
Q Consensus 290 ~----~~~~~~~~~~~i~~~g~v~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~-- 359 (444)
. +.+ .+...+-...++.|.+.|.. .+...+..++.+|+|+.. ...++.+...+..
T Consensus 426 ~~~c~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~ 490 (574)
T smart00638 426 RRYCVNTP----SCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAE 490 (574)
T ss_pred HHHhcCCC----CCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCC
Confidence 3 222 22122333477777777753 244445567777777643 2334445454442
Q ss_pred -cChhHHHHHHHHHHHHccc
Q 038250 360 -VSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 360 -~~~~~~~~a~~~L~~L~~~ 378 (444)
.+..++-.|+.+|..++..
T Consensus 491 ~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 491 PLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 2556788999999888754
No 349
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.13 E-value=42 Score=34.12 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=88.4
Q ss_pred cccHHHHHHHhc----CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc-cccchHHHHHHHHHHh
Q 038250 259 EGAIEPLFKLIK----EPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD-AQRSLCEKALSVLDGL 333 (444)
Q Consensus 259 ~g~i~~Lv~ll~----~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L 333 (444)
.|.+..++..+. ++ +...+..|+..|.|++..-. .-+..... -.+..++.-|.+ .+.+++-.++.+|..+
T Consensus 253 ~~lL~s~~~~la~ka~dp-~a~~r~~a~r~L~~~as~~P---~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDP-SAKSRGMACRGLGNTASGAP---DKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred cccHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHhccCc---HHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455555444433 34 56789999999999998843 12222222 245556655544 4678888888888877
Q ss_pred cCChhhHHHHhcCCCChHHHH---HHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH
Q 038250 334 CSSDYGRGDAYNNSLIFPVIV---KKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK 410 (444)
Q Consensus 334 ~~~~~~~~~i~~~~g~i~~Lv---~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~ 410 (444)
...-.+..- ..+.++.-+ .+..+.++..+..|...+..|+.....+-++...+.+..+. .+|+..++.. ++.
T Consensus 328 ~~~~~~~~l---~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~-~~lllhl~d~-~p~ 402 (533)
T KOG2032|consen 328 LEKASNDDL---ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL-APLLLHLQDP-NPY 402 (533)
T ss_pred HHhhhhcch---hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc-ccceeeeCCC-ChH
Confidence 653322221 123333333 33334567777777777777766555443555555444344 3444445555 666
Q ss_pred HHHHHHHHHHHHH
Q 038250 411 TKEHVSELLKLLN 423 (444)
Q Consensus 411 ~k~~a~~ll~~l~ 423 (444)
+-.++...++.+.
T Consensus 403 va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 403 VARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHHhcC
Confidence 6666666666543
No 350
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=72.10 E-value=36 Score=36.87 Aligned_cols=172 Identities=13% Similarity=0.068 Sum_probs=104.9
Q ss_pred HHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHH--HHHHHhhc
Q 038250 240 VLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVS--LLLEMLVD 317 (444)
Q Consensus 240 ~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~--~Lv~lL~~ 317 (444)
+|++++...+++++.+ ...|++..+...++.-.+.+....+++.|.|++...+ ++.....--.+. ..-.++..
T Consensus 494 ~l~~~t~~~~~~C~~~-l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~----~~~~~~~~~~~~~~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEF-LDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE----LRELLMIFEFIDFSVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHH-HhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHHHHHHHHHhh
Confidence 8889987888888888 5689999999999976567899999999999998764 222221111111 22223333
Q ss_pred ccc-chHHHHHHHHHHhcCChhh------------------------HHHHhcCCCChHH-HHHHHhh-cChhHHHHHHH
Q 038250 318 AQR-SLCEKALSVLDGLCSSDYG------------------------RGDAYNNSLIFPV-IVKKILR-VSDLATEFAVS 370 (444)
Q Consensus 318 ~~~-~~~~~a~~~L~~L~~~~~~------------------------~~~i~~~~g~i~~-Lv~ll~~-~~~~~~~~a~~ 370 (444)
.+. +.--.++.+|+.+..+.+. ...+..+ .-+.+ +..++.. ..+-.+-.|++
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~il~~s~~~g~~lWal~ 647 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVIND-RSFFPRILRILRLSKSDGSQLWALW 647 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhh-hhcchhHHHHhcccCCCchHHHHHH
Confidence 333 5566777777777664331 0111011 12222 4344433 25556778888
Q ss_pred HHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038250 371 ILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 421 (444)
Q Consensus 371 ~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~ 421 (444)
++.++.... .+..+...+.|+++.+..+-.......+++.+..++..
T Consensus 648 ti~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 648 TIKNVLEQN----KEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred HHHHHHHcC----hhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 888888853 44555566788888887754333244555555554433
No 351
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.90 E-value=14 Score=31.24 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=59.9
Q ss_pred ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc-cccchHHHHHHHHHHhcC
Q 038250 260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD-AQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~ 335 (444)
.++..|.+-|.+. ++.++..|+.+|-.+..+.. ......+.+...+..|++++.. .+..+++.++.+|...+.
T Consensus 37 ~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG--~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCG--KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4556677777777 79999999999999988765 4467778888999999999987 688899999999988764
No 352
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=71.71 E-value=1e+02 Score=29.98 Aligned_cols=167 Identities=11% Similarity=0.150 Sum_probs=116.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc-C-cHHHHHHHhhcc----c---------cchHHHH
Q 038250 262 IEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDM-G-LVSLLLEMLVDA----Q---------RSLCEKA 326 (444)
Q Consensus 262 i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~-g-~v~~Lv~lL~~~----~---------~~~~~~a 326 (444)
+..+.+.|... .......++..|.+++..+. +.....+.+. + -.+.+.+++... + +.++...
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~--g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDG--GALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCC--HHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence 56677777777 57788899999999998432 2456666653 2 355677776421 1 1778788
Q ss_pred HHHHHHhcC--ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH-HccccccchHHHHHHHHhhChHHHHHHHH
Q 038250 327 LSVLDGLCS--SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK-LCKNEEREEKTAFAEALQVGAFQKLLLLL 403 (444)
Q Consensus 327 ~~~L~~L~~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~-L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll 403 (444)
+..+..+.. ++..+.+++.+.+.+..+.+-|..++..+....+.+|.. +... +.-.......+..+.++..|..+.
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~-~~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKD-SSVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccC-CCCChhhhhhhcCHHHHHHHHHHh
Confidence 877776654 666788887788888888888877777788888888885 4432 223344555566899999999988
Q ss_pred hcCCCh----HHHHHHHHHHHHHHhhccCCCCCC
Q 038250 404 QVGCAD----KTKEHVSELLKLLNPHRARLECID 433 (444)
Q Consensus 404 ~~~~~~----~~k~~a~~ll~~l~~~~~~~~~~~ 433 (444)
... .+ .+++.+-..|..+.-....+=|+.
T Consensus 214 ~~~-~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~ 246 (330)
T PF11707_consen 214 SRD-GEDEKSSVADLVHEFLLALCTDPKHGVCFP 246 (330)
T ss_pred ccc-CCcccchHHHHHHHHHHHHhcCCCcccccC
Confidence 877 66 788888887777765655555553
No 353
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.52 E-value=2.1 Score=42.86 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=47.1
Q ss_pred CCCCccccccc-cccCcCceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHH
Q 038250 32 TTPNHFRCPIS-LDLMKDPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWC 101 (444)
Q Consensus 32 ~~~~~~~Cpic-~~~~~~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~ 101 (444)
..++++.|++| ...|.+-+++ .|..+||..||...+...+...|+.|.. ....+.++..++..+..-.
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~~~ 285 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINRIL 285 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHHHH
Confidence 45778999999 8999999888 6899999999998773333344555533 2234556666666554443
No 354
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=71.02 E-value=2.7 Score=46.51 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=35.6
Q ss_pred cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||++-.. +|... .||.-.||.|. +|-..+|+..||.|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 48999998744 45444 69988999998 4554688999999986654
No 355
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=70.66 E-value=2 Score=40.29 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=28.4
Q ss_pred cccccccccCcC-ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKD-PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~-Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-+|.-|.....- =-.++|.|.||..|-.. ...+.||.|...+.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~----~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS----DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc----CccccCcCcccHHH
Confidence 366666543332 23569999999999653 34678999975543
No 356
>PLN02195 cellulose synthase A
Probab=70.61 E-value=3.2 Score=45.53 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=35.3
Q ss_pred ccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 38 RCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 38 ~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.|.||++... +|.+. .||.-.||.|. +|-..+|+..||.|+....
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCccc
Confidence 7999998543 56554 69999999998 4554678999999987765
No 357
>PLN02400 cellulose synthase
Probab=70.09 E-value=3.5 Score=45.75 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=35.4
Q ss_pred cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||.+-.- +|.+. .|+.-.||.|.+ |-..+|+..||.|+....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 49999998754 45544 689889999984 543578899999987665
No 358
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=69.85 E-value=48 Score=25.98 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=51.9
Q ss_pred cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHH
Q 038250 257 DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLD 331 (444)
Q Consensus 257 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 331 (444)
...+.+..|+..+..+ .+.....++..|..|..++. ....+.+-|++..|-++=..-++..+...-.++.
T Consensus 27 ~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~----a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 27 KERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPY----AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred cHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcH----HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4457788888888877 56688889999999999986 7788888999999666655455555555444443
No 359
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.61 E-value=3.3 Score=35.50 Aligned_cols=31 Identities=13% Similarity=0.404 Sum_probs=24.1
Q ss_pred CCcchhcHHHHHHHHHh----cC-----CCCCCCCCcccC
Q 038250 53 STGITYDRENIEKWIHE----DG-----NITCPVTNRVLT 83 (444)
Q Consensus 53 ~cg~~~c~~ci~~~~~~----~~-----~~~CP~c~~~~~ 83 (444)
.||..|.+-|+..|+.. ++ .+.||.|..++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 69999999999999841 11 257999987764
No 360
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.89 E-value=1.7e+02 Score=34.30 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhccc--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch--hhHHHhhcccccHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGS--ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH--RKVNVLLDIEGAIE 263 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~--~~~~~i~~~~g~i~ 263 (444)
+..+|..-.. ++..+-.+. +..+-+ ..++.-|+.-|.+....+|+.+|.+|..|..+.+ +..+.+ .....
T Consensus 1011 ~~~Vq~aM~s-IW~~Li~D~--k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l---pelw~ 1084 (1702)
T KOG0915|consen 1011 DKKVQDAMTS-IWNALITDS--KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL---PELWE 1084 (1702)
T ss_pred cHHHHHHHHH-HHHHhccCh--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH---HHHHH
Confidence 5666654444 443333332 222211 3556777777777889999999999999965433 222333 22333
Q ss_pred HHHHHhcCCCChHHHHHHHHH---HHHHhcCCC--CCCchhHHHHhcCcHHHHHH--HhhccccchHHHHHHHHHHhcCC
Q 038250 264 PLFKLIKEPICPTATKASLVV---VYRTITSAS--ATEKPIQKFVDMGLVSLLLE--MLVDAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 264 ~Lv~ll~~~~~~~~~~~a~~a---L~~L~~~~~--~~~~~~~~i~~~g~v~~Lv~--lL~~~~~~~~~~a~~~L~~L~~~ 336 (444)
.+++.+.+= .+.++++|-.+ |..|+..-. .++ .+..-+-..++|.|++ ++ +.-++++.-++.+|..|+.+
T Consensus 1085 ~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~-~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1085 AAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNG-AKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCc-ccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHh
Confidence 444444332 34555555444 444432211 011 1111111224444442 12 33567899999999999985
Q ss_pred hhhHHHHhcCCCChHHHHHHHhhcChhH-----------HHHHHHHH-HHHccccccchHHHHHHHH-------hhChHH
Q 038250 337 DYGRGDAYNNSLIFPVIVKKILRVSDLA-----------TEFAVSIL-WKLCKNEEREEKTAFAEAL-------QVGAFQ 397 (444)
Q Consensus 337 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~-----------~~~a~~~L-~~L~~~~~~~~~~~~~~~~-------~~g~l~ 397 (444)
....-+- --+..||.|+.....-.+.+ ...|+-.+ .+.++.+|- -+.+...+ -+..+|
T Consensus 1162 sg~~lkP-~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspm--meTi~~ci~~iD~~vLeelip 1238 (1702)
T KOG0915|consen 1162 SGKELKP-HFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPM--METINKCINYIDISVLEELIP 1238 (1702)
T ss_pred chhhhcc-hhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcH--HHHHHHHHHhhhHHHHHHHHH
Confidence 5432221 22345566555443222211 12222222 223443332 22222222 256788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 398 KLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 398 ~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
.+.++++.+-.-..|-.++-.+-++.
T Consensus 1239 ~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1239 RLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred HHHHHHhccCCCCcchhHHHHHHHHH
Confidence 99999998866667777776444443
No 361
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=68.79 E-value=3.4 Score=31.60 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=29.4
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
.-.|-+|..-...| |+.||..|-.+ ...|..|+..+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk------kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK------KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc------cCcccccCCeecc
Confidence 34899999887765 89999999443 4479999987743
No 362
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=68.40 E-value=34 Score=28.82 Aligned_cols=74 Identities=18% Similarity=0.096 Sum_probs=59.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
.++..|..-|.++++.++..|..+|-.+.... ......++ ..+++..|+.++....++.+++.++..+.+-+..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva-s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA-SREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh-hHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 56788888888899999999999999996553 44556664 4699999999998655788999999988887654
No 363
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.04 E-value=9.2 Score=32.35 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=52.5
Q ss_pred CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHH---HHHHHHHHHHhcccCCCcCCCCCCCCCChHHHHHHHHH
Q 038250 54 TGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHT---IRRMIQDWCVENRSYGIERIPTPRIPVSSVEVFEINCN 130 (444)
Q Consensus 54 cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~---l~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ll~~ 130 (444)
-.+.||..|-.+.+ ..||.|+.++....-.+... -..-+-.||...+. |-||....-+...+++..
T Consensus 26 ~~~~fC~kCG~~tI-----~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGk------pyPWt~~~L~aa~el~ee 94 (158)
T PF10083_consen 26 LREKFCSKCGAKTI-----TSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGK------PYPWTENALEAANELIEE 94 (158)
T ss_pred HHHHHHHHhhHHHH-----HHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCC------CCchHHHHHHHHHHHHHH
Confidence 35679999988876 25999998876432111100 00012355555542 444532112233345554
Q ss_pred HHhhcccCChhHHHHHHHHHHHHhccCcccc
Q 038250 131 ITTACKSEDQAGCRDLVAKIKKWTKESDRNK 161 (444)
Q Consensus 131 L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~ 161 (444)
+... ++++++.=-..|.+|.+++|..+
T Consensus 95 ~eeL----s~deke~~~~sl~dL~~d~PkT~ 121 (158)
T PF10083_consen 95 DEEL----SPDEKEQFKESLPDLTKDTPKTK 121 (158)
T ss_pred hhcC----CHHHHHHHHhhhHHHhhcCCccH
Confidence 4444 66777777788888888877544
No 364
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.95 E-value=35 Score=35.35 Aligned_cols=98 Identities=10% Similarity=0.150 Sum_probs=63.9
Q ss_pred cccHHHHHHH-hcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHHHHHHHHHHhcCC
Q 038250 259 EGAIEPLFKL-IKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 259 ~g~i~~Lv~l-l~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~ 336 (444)
.|++..|++. ++++ +.+++++|.-+|.-+|..+. ..++..+++|++. +..++-..+-+|..-|..
T Consensus 550 ~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~------------~~lv~tvelLs~shN~hVR~g~AvaLGiacag 616 (926)
T COG5116 550 LGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDR------------DLLVGTVELLSESHNFHVRAGVAVALGIACAG 616 (926)
T ss_pred chhHhhhheeecccC-chHHHHHHHHheeeeEecCc------------chhhHHHHHhhhccchhhhhhhHHHhhhhhcC
Confidence 4566777777 4444 78899999988888887654 3567778888754 667777777777766654
Q ss_pred hhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHc
Q 038250 337 DYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLC 376 (444)
Q Consensus 337 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 376 (444)
...+..+ ..|-.++...++-+++.|+-++..+.
T Consensus 617 ~G~~~a~-------diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 617 TGDKVAT-------DILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred CccHHHH-------HHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 4333333 23333344456677777777766643
No 365
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.93 E-value=3.4 Score=38.44 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=24.3
Q ss_pred CcchhcHHHHHHHHHh-----------cCCCCCCCCCcccCCCC
Q 038250 54 TGITYDRENIEKWIHE-----------DGNITCPVTNRVLTSFE 86 (444)
Q Consensus 54 cg~~~c~~ci~~~~~~-----------~~~~~CP~c~~~~~~~~ 86 (444)
|-.-.|++|+-+|+.. +|..+||.|++.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 3445788999999852 24678999999887543
No 366
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=67.86 E-value=3.9 Score=39.96 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=23.2
Q ss_pred hhcHHHHHHHHHhc-----------CCCCCCCCCcccCCCCC
Q 038250 57 TYDRENIEKWIHED-----------GNITCPVTNRVLTSFEP 87 (444)
Q Consensus 57 ~~c~~ci~~~~~~~-----------~~~~CP~c~~~~~~~~l 87 (444)
-.|..|+-+||..+ +...||.||+.+.-.++
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 35789999999643 35679999998876543
No 367
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=67.51 E-value=54 Score=27.03 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=46.3
Q ss_pred ccHHHHHHHhcCCCC---hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHH
Q 038250 260 GAIEPLFKLIKEPIC---PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVL 330 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~---~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L 330 (444)
.++..+.+++....+ .+....++.++......- ....+.+.+.++.+.++|. ++..++.|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~-----~~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWI-----PIELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS------HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC-----CHHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 344555555554422 788999999999988865 4778888889999999994 556688887765
No 368
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.41 E-value=5.7 Score=40.46 Aligned_cols=50 Identities=16% Similarity=0.397 Sum_probs=36.3
Q ss_pred CCccccccccccCcC-ceecCCcchhcHHHHHHHHHhc---C-C--CCCCC--CCcccC
Q 038250 34 PNHFRCPISLDLMKD-PVTLSTGITYDRENIEKWIHED---G-N--ITCPV--TNRVLT 83 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~-Pv~~~cg~~~c~~ci~~~~~~~---~-~--~~CP~--c~~~~~ 83 (444)
.....|.||.+.+.. .+.+.|||.||..|+..|+..+ + . ..||. |.....
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 445799999999886 5556999999999999998532 1 1 35666 544444
No 369
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.16 E-value=13 Score=33.27 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=35.2
Q ss_pred ccccccccCc--CceecCCcchhcHHHHHHHHHhc------CCCCCCCCCcccC
Q 038250 38 RCPISLDLMK--DPVTLSTGITYDRENIEKWIHED------GNITCPVTNRVLT 83 (444)
Q Consensus 38 ~Cpic~~~~~--~Pv~~~cg~~~c~~ci~~~~~~~------~~~~CP~c~~~~~ 83 (444)
.|.+|.-.+. |-+-+-|-|.|...|+.+|-.+. ..+.||.|..++-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 6888888876 44566899999999999987421 2367999987654
No 370
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=67.11 E-value=13 Score=31.47 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~ 245 (444)
|.+||.+|.+++.++...|+.+|.+..
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 899999999999999999999998764
No 371
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.90 E-value=3.6 Score=39.92 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=30.0
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHH
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIH 68 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~ 68 (444)
..|.+.+..|.+||.+.-|..|....|-.|++
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lk 72 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLK 72 (518)
T ss_pred hhceeccccccCcccccCCcEEeeehhhHHHH
Confidence 47899999999999999999999999999995
No 372
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=66.82 E-value=48 Score=28.48 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=73.2
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250 218 SMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 218 ~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
.++.|.++|+.+ +..+|..+.++|+.|-+.|+..-+.+ . +..+.-.. ... +....... +.+.....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~-~--~~~~~~~~--~~~-~~~~~~~~---l~~~~~~~---- 77 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSI-Q--KSLDSKSS--ENS-NDESTDIS---LPMMGISP---- 77 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcc-c--ccCCcccc--ccc-cccchhhH---HhhccCCC----
Confidence 467788888876 69999999999999955565433333 1 22221000 011 11111111 11111111
Q ss_pred chhHHHHhcCcHHHHHHHhhccccc-hHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHH
Q 038250 297 KPIQKFVDMGLVSLLLEMLVDAQRS-LCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKL 375 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~~~~~-~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L 375 (444)
.-....-..++..|+++|++.+-. -...++.++.++-.....+. +-.=.-++|.++..+++.++..+|.-..-|..|
T Consensus 78 -~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 78 -SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred -chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 122233344788888888865322 22344455444442211111 111135688888888877667777655555444
No 373
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=65.97 E-value=6.1 Score=43.78 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=35.7
Q ss_pred cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||++-.. +|... .||.-.|+.|. +|-..+|+..||.|+....
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 58999998754 45544 69988999998 4543678899999987765
No 374
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.85 E-value=25 Score=30.35 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=69.6
Q ss_pred ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC--cHHHHHHHhhcc-ccchHHHHHHHHHHhcCC
Q 038250 260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG--LVSLLLEMLVDA-QRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g--~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~ 336 (444)
..+..+..+|+++ +++.+-.++..+..++...+ ...+.+.| -+..|+.+|... ...+.+.++.+|..|...
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~-----~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCS-----WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4556677888887 67788878887777776642 44554544 478888999765 455778888888877643
Q ss_pred h----hhHHHHhcCCCChHHHHHHHhhcC--hhHHHHHHHHHHHHccccc
Q 038250 337 D----YGRGDAYNNSLIFPVIVKKILRVS--DLATEFAVSILWKLCKNEE 380 (444)
Q Consensus 337 ~----~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~a~~~L~~L~~~~~ 380 (444)
- +-.+++ .. ..++.++..+..-. ....+.++.+|..+-.+.|
T Consensus 99 ~~~~p~l~Rei-~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGKPTLTREI-AT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred hcCCCchHHHH-hh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 3 333333 11 22444444433322 3556667777776665544
No 375
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.59 E-value=96 Score=27.33 Aligned_cols=141 Identities=12% Similarity=0.074 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcc-Ccc----cchhHh------hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhh
Q 038250 142 GCRDLVAKIKKWTKE-SDR----NKRCIV------DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGL 210 (444)
Q Consensus 142 ~~~~Al~~L~~l~~~-~~~----~~~~i~------~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~ 210 (444)
.+..|+..|..+++. ++. ++..+. ..+.-+.|+..+- .|+ ++.++..|+.+|..++.+...+-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il--~Dp----~~kvR~aA~~~l~~lL~gsk~~L 75 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL--KDP----SPKVRAAAASALAALLEGSKPFL 75 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH--cCC----chhHHHHHHHHHHHHHHccHHHH
Confidence 466788888888876 321 111111 2234455665552 233 68899999999987776654322
Q ss_pred hhccc-------------------CCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH--
Q 038250 211 TYLGS-------------------ASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL-- 268 (444)
Q Consensus 211 ~~i~~-------------------~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l-- 268 (444)
....+ ...-..|+..|..+ +.....+..++|..|....+-.|-. .|.++.++.-
T Consensus 76 ~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~----~~ll~~~v~~v~ 151 (182)
T PF13251_consen 76 AQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP----PGLLTEVVTQVR 151 (182)
T ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC----HhHHHHHHHHHH
Confidence 11110 11224555666555 6777788899999997766655543 3666666644
Q ss_pred --hcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 269 --IKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 269 --l~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
+.+. |+.++..++.++..+.....
T Consensus 152 ~~l~~~-d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 152 PLLRHR-DPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCC
Confidence 4454 77888888888888876543
No 376
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.03 E-value=1.7e+02 Score=29.96 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=93.1
Q ss_pred hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChh-hhhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 038250 166 DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGE-GLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLRE 243 (444)
Q Consensus 166 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~-~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~ 243 (444)
+.|...-++..+.... .+.+..++.-|++.|.+..+.-++ .+.. ..-.+..++.-|..+ +.+++..|...|..
T Consensus 252 ~~~lL~s~~~~la~ka---~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKA---TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566555555553211 123578899999999955555232 2221 123355555555444 78888889988888
Q ss_pred HHhcchhhHHHhhcccccHHHHH---HHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhcc
Q 038250 244 IVSSDHRKVNVLLDIEGAIEPLF---KLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDA 318 (444)
Q Consensus 244 L~s~~~~~~~~i~~~~g~i~~Lv---~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~ 318 (444)
+ .....++... .+.++.-+ .++.+. +++.+.+|..+...|+.... +..+..+++ -|...+++-.|.+.
T Consensus 327 v-~~~~~~~~l~---~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g--~~~e~~Fte~v~k~~~~lllhl~d~ 399 (533)
T KOG2032|consen 327 V-LEKASNDDLE---SYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAG--GGWEEFFTEQVKKRLAPLLLHLQDP 399 (533)
T ss_pred H-HHhhhhcchh---hhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcC--CCchhhhHHHHHhccccceeeeCCC
Confidence 8 3433444332 35555444 445555 78888888887777765543 224555554 23344555555555
Q ss_pred ccchHHHHHHHHHHhcCChhhHHHH
Q 038250 319 QRSLCEKALSVLDGLCSSDYGRGDA 343 (444)
Q Consensus 319 ~~~~~~~a~~~L~~L~~~~~~~~~i 343 (444)
.+.+ -.|+......+...-.+++.
T Consensus 400 ~p~v-a~ACr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 400 NPYV-ARACRSELRTCYPNLVRKEL 423 (533)
T ss_pred ChHH-HHHHHHHHHhcCchhHHHHH
Confidence 5543 44555555555544444443
No 377
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=64.61 E-value=1.4e+02 Score=31.92 Aligned_cols=242 Identities=10% Similarity=0.027 Sum_probs=129.4
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS 218 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~ 218 (444)
+.+++.+=-..|.+.. +.--+.++..-++|.|+..+.- .+. ...+....+..-. .+...+ .+.+.
T Consensus 267 s~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~-g~a----~~~~ltpl~k~~k-~ld~~e------yq~~i 331 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEF-GDA----ASDFLTPLFKLGK-DLDEEE------YQVRI 331 (690)
T ss_pred cHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhc-ccc----chhhhhHHHHhhh-hccccc------cccch
Confidence 4444444444444422 2233445666667777776642 111 1223322222222 222221 44678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
+|.|++++++.+..+|-. .|.++-..-+..-..+ ...-++|.+..-+.+. ++.+++..+.++..|+.-=.
T Consensus 332 ~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~-~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~----- 401 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQI-LNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLS----- 401 (690)
T ss_pred hhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHh-hcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhc-----
Confidence 999999999998888744 4444411112222233 2457889999888888 89999999999988875432
Q ss_pred hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
.. .++...+..+-++-.+.+..++-+..-+|..++.+..... .+.-.+..+...+.+.-...+..++.+|+.....
T Consensus 402 ~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 402 KR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred hh-hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 22 2232234444444445566778777777777776432111 1111223333334444445667777777776664
Q ss_pred cccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250 379 EEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE 417 (444)
Q Consensus 379 ~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ 417 (444)
.+. .-+...+++.+.-+.-.. ...++..|-.
T Consensus 478 ~~~-------~~va~kIlp~l~pl~vd~-e~~vr~~a~~ 508 (690)
T KOG1243|consen 478 FDQ-------SEVANKILPSLVPLTVDP-EKTVRDTAEK 508 (690)
T ss_pred cch-------hhhhhhccccccccccCc-ccchhhHHHH
Confidence 321 112245566666555444 4455555554
No 378
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=64.37 E-value=48 Score=27.40 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=58.4
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLIKE--PICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~~a~~aL~~L~~~~ 292 (444)
.++..|-.-|+++++.++..|..+|-.+...... ....++. ..++..|+.++.. ..++.++..++..|.+.+..-
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4578888888899999999999999999655543 6666744 4777789999986 346789999999888876554
No 379
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.07 E-value=32 Score=26.59 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
+...+..|.+..+.+|.++...|+.|..... ...+ ...+++..+...|+++ ++-+--+|...|..|+....
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~-~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVI-DIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchh-hHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHCh
Confidence 4556667778888999999999999965443 1222 4457788888889888 78888889999999987654
No 380
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=63.97 E-value=6.7 Score=31.18 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=29.2
Q ss_pred cccccccccCcCceec--------CC---cchhcHHHHHHHHHh-------cCCCCCCCCCc
Q 038250 37 FRCPISLDLMKDPVTL--------ST---GITYDRENIEKWIHE-------DGNITCPVTNR 80 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~--------~c---g~~~c~~ci~~~~~~-------~~~~~CP~c~~ 80 (444)
-+|..|.+--.+..+. .| .-.||..|+...+.+ .....||.|+-
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3566676655554432 24 567999999887642 34578999975
No 381
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=63.52 E-value=27 Score=29.30 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=56.7
Q ss_pred ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc------cccchHHHHHHHHHHh
Q 038250 260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD------AQRSLCEKALSVLDGL 333 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L 333 (444)
.++..|.+-|.++ ++.++-.|+.+|-.+..+.. ......+.+.+.+..|++++.. .+..+++..+.+|..-
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG--~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCG--ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcC--HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4566777778887 78899999998888887754 3467778888999999999963 3678888888888766
Q ss_pred c
Q 038250 334 C 334 (444)
Q Consensus 334 ~ 334 (444)
+
T Consensus 115 ~ 115 (139)
T cd03567 115 T 115 (139)
T ss_pred H
Confidence 5
No 382
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=62.60 E-value=1.3e+02 Score=27.68 Aligned_cols=128 Identities=18% Similarity=0.198 Sum_probs=80.3
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ 267 (444)
++..+...+..|...+..+..+. .-++..|+.+...++.+.+.-+...+..+-+.++..- +.+..++.
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-------~~L~~~L~ 81 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-------PFLQPLLL 81 (234)
T ss_pred ChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-------HHHHHHHH
Confidence 68888888888884443331222 2346666666667776665566667776643333221 33444444
Q ss_pred H--h------c-CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh-hccccchHHHHHHHHHHhcC
Q 038250 268 L--I------K-EPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML-VDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 268 l--l------~-~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~ 335 (444)
. + . .....+..-..+.+++.+|...+ + --...++.+..+| .+.++.++..++.+|..|+.
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p----~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCSRP----D----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh----h----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 3 1 1 11134455555678999998876 3 1223678888888 67788889999999999993
No 383
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.59 E-value=1.4e+02 Score=34.89 Aligned_cols=140 Identities=12% Similarity=0.135 Sum_probs=81.9
Q ss_pred CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250 168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS 247 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~ 247 (444)
+.+..++..|. +. ...++..|+.+|..+...++.... ....-..+-.-+...+..+|+.|+..++...-.
T Consensus 816 ~yLk~Il~~l~---e~----~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 816 PYLKLILSVLG---EN----AIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HHHHHHHHHhc---Cc----hHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 35556666663 22 478999999999966666655332 122233333444456789999999999966444
Q ss_pred chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---ccccchHH
Q 038250 248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---DAQRSLCE 324 (444)
Q Consensus 248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~~~~ 324 (444)
.++.-... -.-+..=+.+. ...+++.+...|+.+|...+ +-..++ ...+++|+ +.+..+++
T Consensus 886 ~~e~~~qy------Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~p----df~~i~-----~~cakmlrRv~DEEg~I~k 949 (1692)
T KOG1020|consen 886 IPELIFQY------YDQIIERILDT-GVSVRKRVIKILRDICEETP----DFSKIV-----DMCAKMLRRVNDEEGNIKK 949 (1692)
T ss_pred cHHHHHHH------HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCC----ChhhHH-----HHHHHHHHHhccchhHHHH
Confidence 44433333 11122222233 47899999999999998876 333332 23444443 22222566
Q ss_pred HHHHHHHHh
Q 038250 325 KALSVLDGL 333 (444)
Q Consensus 325 ~a~~~L~~L 333 (444)
-+..++..+
T Consensus 950 Lv~etf~kl 958 (1692)
T KOG1020|consen 950 LVRETFLKL 958 (1692)
T ss_pred HHHHHHHHH
Confidence 666655555
No 384
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.57 E-value=1.1e+02 Score=33.46 Aligned_cols=180 Identities=12% Similarity=0.110 Sum_probs=89.0
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHH-HHH----HHh---cCCHHHHHHHHHH
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRC-MVW----FLK---SGDLSRRRNAVLV 240 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~-Lv~----lL~---~~~~~~~~~A~~~ 240 (444)
.+|.++++|++. ...+...|+.++-.++...+.+...+..++-+.+ +.. +.+ .+...--+....+
T Consensus 499 ~~p~li~~L~a~-------s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKa 571 (960)
T KOG1992|consen 499 LLPRLIRFLEAE-------SRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKA 571 (960)
T ss_pred HHHHHHHhccCc-------chHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHH
Confidence 456677777421 3567777777777677766665555544443332 222 221 2211222233344
Q ss_pred HHHHHhcchhhHHHh-hcc-cccHHHHHHHhcCCCChHHHHH----HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHH
Q 038250 241 LREIVSSDHRKVNVL-LDI-EGAIEPLFKLIKEPICPTATKA----SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEM 314 (444)
Q Consensus 241 L~~L~s~~~~~~~~i-~~~-~g~i~~Lv~ll~~~~~~~~~~~----a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~l 314 (444)
+..+-+..++..... +.. .+....+-.+-+++.+|..-.. .+..++..+..+. ..-.-.+...+|.+-.+
T Consensus 572 ImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~----~~vs~~e~aL~p~fq~I 647 (960)
T KOG1992|consen 572 IMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANP----SAVSSLEEALFPVFQTI 647 (960)
T ss_pred HHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCc----hHHHHHHHHHHHHHHHH
Confidence 333334444433222 100 1222333334455555554333 3333334444332 12222344567776777
Q ss_pred hhccccchHHHHHHHHHHhcCChhh--------------HHHHhcCCCChHHHHHHHhh
Q 038250 315 LVDAQRSLCEKALSVLDGLCSSDYG--------------RGDAYNNSLIFPVIVKKILR 359 (444)
Q Consensus 315 L~~~~~~~~~~a~~~L~~L~~~~~~--------------~~~i~~~~g~i~~Lv~ll~~ 359 (444)
|+++=.+..-.++-+|+.|..+..+ ...+....|-||.+|.++..
T Consensus 648 l~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 648 LSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHH
Confidence 7665455555666666666554333 22344567999999998875
No 385
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=62.16 E-value=53 Score=34.86 Aligned_cols=183 Identities=10% Similarity=0.027 Sum_probs=107.0
Q ss_pred hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 038250 165 VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREI 244 (444)
Q Consensus 165 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L 244 (444)
.+.+++|.|++++++. |..++..-+.-+-. .-+.-...+.+.-++|.+..-+.+.++.++++.+..+..|
T Consensus 327 yq~~i~p~l~kLF~~~-------Dr~iR~~LL~~i~~---~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP-------DRQIRLLLLQYIEK---YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVL 396 (690)
T ss_pred cccchhhhHHHHhcCc-------chHHHHHHHHhHHH---HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 5667899999999643 45555332222221 1112233566788899999999999999999999999999
Q ss_pred HhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc-HHHHHHHhhccccchH
Q 038250 245 VSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL-VSLLLEMLVDAQRSLC 323 (444)
Q Consensus 245 ~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~-v~~Lv~lL~~~~~~~~ 323 (444)
++.-.. +.+ ....+..|-++-.+. ....+.+..-+|..++.+.. ..++.++ +.+..+-+.++-...+
T Consensus 397 a~kL~~--~~L--n~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~-------~~~R~~vL~~aftralkdpf~paR 464 (690)
T KOG1243|consen 397 APKLSK--RNL--NGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLA-------ASVRKRVLASAFTRALKDPFVPAR 464 (690)
T ss_pred Hhhhch--hhh--cHHHHHHHHhhCccc-cCcccccceeeecccccccc-------hhhhccccchhhhhhhcCCCCCch
Confidence 644322 244 223555555554433 56677777777777766532 2223333 3344455666666667
Q ss_pred HHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHH
Q 038250 324 EKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSIL 372 (444)
Q Consensus 324 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L 372 (444)
..+..+|+....-.+..... ..++|.++-+....+..++..|-.++
T Consensus 465 ~a~v~~l~at~~~~~~~~va---~kIlp~l~pl~vd~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 465 KAGVLALAATQEYFDQSEVA---NKILPSLVPLTVDPEKTVRDTAEKAI 510 (690)
T ss_pred hhhhHHHhhcccccchhhhh---hhccccccccccCcccchhhHHHHHH
Confidence 77777777665533322221 24455555554444555555444443
No 386
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=62.10 E-value=43 Score=26.20 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=48.1
Q ss_pred cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHH
Q 038250 215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVV 285 (444)
Q Consensus 215 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL 285 (444)
+.+.+..|+..........++.+...|..| ..++.....+ ..-|+...|-++=..- ++..+...-..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L-~~~~~a~~~l-~~iG~~~fL~klr~~~-~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRL-LKSPYAAQIL-RDIGAVRFLSKLRPNV-EPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HhCcHHHHHH-HHccHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 456678888888888777889999999999 5677777777 5578888866665433 455554444433
No 387
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=61.79 E-value=1.5e+02 Score=32.49 Aligned_cols=120 Identities=14% Similarity=0.060 Sum_probs=78.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhHHHH
Q 038250 265 LFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDA 343 (444)
Q Consensus 265 Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i 343 (444)
+...+..+ ++...+..+.++.+++.-.. ....- ...-+++-..-....-..+.+....+|..++. .++....+
T Consensus 446 l~~~~~~~-~~~la~~lL~~~~~l~~l~~----~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 446 LLKSLDSD-NPDLAKALLKSLSPLIGLEK----FPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHhhcCC-ChHHHHHHHHHHHHhccccc----cCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34444444 67778888888888875543 11110 11122222222222234556777888888886 56667777
Q ss_pred hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHh
Q 038250 344 YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQ 392 (444)
Q Consensus 344 ~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 392 (444)
+.+.++...++.++.++++.+.+.|..+|........ ..+..+++.+
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R~e~i~~ll~ 566 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--RLEAIQALLQ 566 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--HHHHHHHHHH
Confidence 7889999999999999999999999999999887433 2556666654
No 388
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=61.25 E-value=1.3e+02 Score=32.41 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=87.7
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHHHhc
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWF-LKSGDLSRRRNAVLVLREIVSS 247 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~L~s~ 247 (444)
-|.-|+.+|++. +..+.+.+...+..++..+.+. -.+..||.. ++.++ ..|+.+|..+ .
T Consensus 5 ~~~~l~~~l~s~-------~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~--~ 64 (668)
T PF04388_consen 5 SITELLSLLESN-------DLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNS----QRALEILVGV--Q 64 (668)
T ss_pred cHHHHHHHhcCC-------chhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCc----HHHHHHHHhc--C
Confidence 356678888643 5667777777777555443322 235666664 44454 3456666666 3
Q ss_pred chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccchHHHH
Q 038250 248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRSLCEKA 326 (444)
Q Consensus 248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a 326 (444)
.+..+..+ ..|-+.+.. +..+..++..|..+..... .....|++...++.|+++|. +.+..+...|
T Consensus 65 ~P~~K~~~-------~~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp---~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~a 131 (668)
T PF04388_consen 65 EPHDKHLF-------DKLNDYFVK---PSYRLQALTLLGHFVRSQP---PWLYKILQTPLFKSLLKCLQFDTSITVVSSA 131 (668)
T ss_pred CccHHHHH-------HHHHHHHcC---chhHHHHHHHHHHHHhcCC---chHHHHhcChhHHHHHHHHhhcccHHHHHHH
Confidence 44444444 234445543 4688889999999988764 47888899999999999997 4466777777
Q ss_pred HHHHHHhc
Q 038250 327 LSVLDGLC 334 (444)
Q Consensus 327 ~~~L~~L~ 334 (444)
+.+|..|-
T Consensus 132 l~~LimlL 139 (668)
T PF04388_consen 132 LLVLIMLL 139 (668)
T ss_pred HHHHHHHh
Confidence 77777664
No 389
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.87 E-value=36 Score=37.17 Aligned_cols=167 Identities=14% Similarity=0.064 Sum_probs=98.7
Q ss_pred chhHhhcCchHHHHHHHHhhcc-cccccchHHHHHHHHHHHhhcCCChhhhhhccc--------CCcHHHHHHHHhc---
Q 038250 161 KRCIVDNGAVSVLAEAFETFSK-TCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS--------ASSMRCMVWFLKS--- 228 (444)
Q Consensus 161 ~~~i~~~G~i~~Lv~lL~~~~~-~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~--------~g~i~~Lv~lL~~--- 228 (444)
.+-+.+.|++..++++...... .......+....|+.+|. ++..-++.+..+++ ..+|..++..-.-
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~-i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLH-IVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhhee-eeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 4567778888888888742110 000123578889999999 77776766655431 2245544443211
Q ss_pred -CCHHHHHHHHHHHHHHHhcchhhHHHhhccccc---HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh
Q 038250 229 -GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGA---IEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD 304 (444)
Q Consensus 229 -~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~---i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~ 304 (444)
.+++++..|..+|.|+.-..++++..+...-|- -+. .. +..+......++.+.-.++. +..
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r-~~-l~~~~ks~~le~~l~~mw~~-------------Vr~ 737 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR-IF-LGAGTKSAKLEQVLRQMWEA-------------VRG 737 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc-cc-ccCCCchHHHHHHHHHHHHH-------------Hhc
Confidence 268999999999999965555666544111110 000 00 11111122233333333333 334
Q ss_pred cCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcCChhhHHHH
Q 038250 305 MGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCSSDYGRGDA 343 (444)
Q Consensus 305 ~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i 343 (444)
.++|..|++||... -..++.-|+.+|.-|+.+++.++-+
T Consensus 738 ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIl 781 (1516)
T KOG1832|consen 738 NDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQIL 781 (1516)
T ss_pred CccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHH
Confidence 56999999999843 2457899999999999988876654
No 390
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=60.61 E-value=4.3 Score=23.29 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=4.7
Q ss_pred ccccccccC
Q 038250 38 RCPISLDLM 46 (444)
Q Consensus 38 ~Cpic~~~~ 46 (444)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 355555554
No 391
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.60 E-value=1.7e+02 Score=34.36 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc---C
Q 038250 231 LSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDM---G 306 (444)
Q Consensus 231 ~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~---g 306 (444)
...|.-|+.=+..|++..- +....+ ...||.|.+.=-++ ++ -++.|..-||+.-..+. +.+++. .
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l---~kLIPrLyRY~yDP-~~-~Vq~aM~sIW~~Li~D~------k~~vd~y~ne 1039 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYL---KKLIPRLYRYQYDP-DK-KVQDAMTSIWNALITDS------KKVVDEYLNE 1039 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHH---HHhhHHHhhhccCC-cH-HHHHHHHHHHHHhccCh------HHHHHHHHHH
Confidence 4455556666777753322 222222 24677777766666 44 45567778998776652 334442 3
Q ss_pred cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc----ChhHH---HHHHHHHHHHcccc
Q 038250 307 LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV----SDLAT---EFAVSILWKLCKNE 379 (444)
Q Consensus 307 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~~---~~a~~~L~~L~~~~ 379 (444)
.++-|+.-|.+..=.++|.++-+|..|-.....-... .-+|.+-..+.+. .+.++ +.++.+|..||-..
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~----e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK----EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566666666667789999999999998754322221 1233333333332 22333 55666676665432
Q ss_pred ccchHHHHHHHHhhChHHHHHH--HHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 380 EREEKTAFAEALQVGAFQKLLL--LLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 380 ~~~~~~~~~~~~~~g~l~~Ll~--ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
-+.+.-......-+-++|.|+. .| +. .+.+|+-+-..+--+.++.
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl~~gim-s~-v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIM-SK-VNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHhccCcc-cc-hHHHHHHHHHHHHHHHHhc
Confidence 2211111111122456666666 44 44 5778888877665555553
No 392
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=60.43 E-value=6.7 Score=23.85 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=7.8
Q ss_pred CCCCCCCCCcc
Q 038250 71 GNITCPVTNRV 81 (444)
Q Consensus 71 ~~~~CP~c~~~ 81 (444)
....||.|+..
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45579999764
No 393
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=59.85 E-value=60 Score=26.88 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=56.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChH-HHHHHHHHHHHHhcC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPT-ATKASLVVVYRTITS 291 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~-~~~~a~~aL~~L~~~ 291 (444)
.++..|..-|.++++.++..|..+|-.+.... ......+ ...+++..|+.++....... +++.++..+..-+..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev-~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV-ASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH-HhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 45777888888899999999999999996553 4555666 34689999999998764433 888888888776543
No 394
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.82 E-value=64 Score=30.88 Aligned_cols=131 Identities=13% Similarity=0.124 Sum_probs=68.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHh
Q 038250 265 LFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAY 344 (444)
Q Consensus 265 Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 344 (444)
.+..|.+. +-+.+-.++..|+.|+..+. +....+. ...|-.+++-+.+....+...|+.++..|...-.+...-
T Consensus 93 ~l~~L~s~-dW~~~vdgLn~irrLs~fh~---e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 93 ALKKLSSD-DWEDKVDGLNSIRRLSEFHP---ESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHhchH-HHHHHhhhHHHHHHHHhhhH---HHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444444 44555556666666665542 1111111 124555555566666677788888888776533222221
Q ss_pred cCCCChHHHHHH-Hhhc---ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250 345 NNSLIFPVIVKK-ILRV---SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE 417 (444)
Q Consensus 345 ~~~g~i~~Lv~l-l~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ 417 (444)
-...++.. +.+. +.-+.+.|-.+|..+..+-.. .-+++.|+..++.. .++++..++.
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-----------~~~L~~L~~~~~~~-n~r~r~~a~~ 227 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-----------QKLLRKLIPILQHS-NPRVRAKAAL 227 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-----------HHHHHHHHHHHhhh-chhhhhhhhc
Confidence 12233332 3333 233568888888777764211 24455666666666 5666655543
No 395
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=59.64 E-value=11 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred cchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 55 GITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 55 g~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
..|||..|.+..+ ...||-|+-.+..+
T Consensus 28 ECTFC~~C~e~~l----~~~CPNCgGelv~R 54 (57)
T PF06906_consen 28 ECTFCADCAETML----NGVCPNCGGELVRR 54 (57)
T ss_pred eCcccHHHHHHHh----cCcCcCCCCccccC
Confidence 4699999999876 34799998766543
No 396
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=59.19 E-value=1.5e+02 Score=27.53 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=67.7
Q ss_pred chHHHHHHHHhhcccc--c--ccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 038250 169 AVSVLAEAFETFSKTC--L--DENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREI 244 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~--~--~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L 244 (444)
.+|.|+.+|+...+.. . +.+......|+..|. .+.+..++++++.+++.++... -..++-.
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLa-----------q~re~~A~~~li~l~~~~~~~~----~~l~GD~ 96 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLA-----------QFREERALPPLIRLFSQDDDFL----EDLFGDF 96 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHH-----------HHhhhhhHHHHHHHHcCCcchH----HHHHcch
Confidence 6889999996532110 0 011222334444443 3445788999999997665311 1122221
Q ss_pred Hh-cchhhHHHhhcccccHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCCCCCCchhHHHHh
Q 038250 245 VS-SDHRKVNVLLDIEGAIEPLFKLIKEPI-CPTATKASLVVVYRTITSASATEKPIQKFVD 304 (444)
Q Consensus 245 ~s-~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~ 304 (444)
.+ .-...-..+ ..|-++.|-.++.++. +.-++.+|..+|..++..+. ..|..+++
T Consensus 97 ~tE~l~~ilasv--~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~---~~Re~vi~ 153 (249)
T PF06685_consen 97 ITEDLPRILASV--GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP---ISREEVIQ 153 (249)
T ss_pred hHhHHHHHHHHH--hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC---CCHHHHHH
Confidence 11 111222233 2578899999998773 46789999999999998876 34666555
No 397
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=57.71 E-value=1.7e+02 Score=27.52 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=50.0
Q ss_pred chhHhhcCchH-HHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC-------------------------hhhhhhcc
Q 038250 161 KRCIVDNGAVS-VLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA-------------------------GEGLTYLG 214 (444)
Q Consensus 161 ~~~i~~~G~i~-~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~-------------------------~~~~~~i~ 214 (444)
+..+.+.++++ -|+-+|.++.+ +..+...++.+|. ++... ..+|..+.
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~-----~~~l~~~~l~LLV-~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl 106 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKD-----DDKLFLACLRLLV-NLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFL 106 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccC-----chHHHHHHHHHHH-HhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555 46666655422 4667777777777 44431 13456777
Q ss_pred cCCcHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhc
Q 038250 215 SASSMRCMVWFLKS-----------GDLSRRRNAVLVLREIVSS 247 (444)
Q Consensus 215 ~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~L~s~ 247 (444)
+.+++..++.++.. .+..+.+.....++|+...
T Consensus 107 ~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 107 DPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAI 150 (266)
T ss_pred ccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 78888888877631 1245667788889998655
No 398
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.35 E-value=1.7e+02 Score=27.47 Aligned_cols=165 Identities=11% Similarity=0.060 Sum_probs=93.2
Q ss_pred CcHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcch-------hhHHHhhcccccHHHHHHHhcCCC---ChHHHHHHHHH
Q 038250 217 SSMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDH-------RKVNVLLDIEGAIEPLFKLIKEPI---CPTATKASLVV 284 (444)
Q Consensus 217 g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~-------~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~a 284 (444)
|..+-+..++-.| +....+.+..+|..|+...+ +.+-.+ ...+.+|.+++-+.++. ........+..
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~-~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~ 138 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLF-LLLALLPRLLHAFDDPNPIQPDQECIEIAEA 138 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHH-HHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 3444444444444 45566778888888843321 123222 22355666667677662 01445566777
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-c---cchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-Q---RSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~---~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~ 360 (444)
|..+|.... . +.+..++.....+ - .+....++..|..--. ++. +...+-.|+++|.++
T Consensus 139 La~~a~~~~-----~------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~------~~~~l~~Ll~lL~n~ 200 (262)
T PF14225_consen 139 LAQVAEAQG-----L------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDH------EFQILTFLLGLLENG 200 (262)
T ss_pred HHHHHHhCC-----C------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chh------HHHHHHHHHHHHhCC
Confidence 888885532 1 1334444444433 2 2233334444433221 111 123455788888888
Q ss_pred ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
..-.+.....+|..+-.+-.- ... .....+.+|+++++.+
T Consensus 201 ~~w~~~~~L~iL~~ll~~~d~-----~~~-~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 201 PPWLRRKTLQILKVLLPHVDM-----RSP-HGADLISPLLRLLQTD 240 (262)
T ss_pred cHHHHHHHHHHHHHHhccccC-----CCC-cchHHHHHHHHHhCCc
Confidence 888899999999888775322 111 5677999999999887
No 399
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=57.35 E-value=1.1e+02 Score=31.94 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=78.9
Q ss_pred HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccch
Q 038250 243 EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSL 322 (444)
Q Consensus 243 ~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~ 322 (444)
+....+++.-+.+ .|.+..+++-+.+. +..++..++..|.-+...-. -....+-.|.+..|.+-+-+.++.+
T Consensus 77 Y~~~~dpeg~~~V---~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~----eIDe~l~N~L~ekl~~R~~DRE~~V 148 (885)
T COG5218 77 YDMPDDPEGEELV---AGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVR----EIDEVLANGLLEKLSERLFDREKAV 148 (885)
T ss_pred hcCCCChhhhHHH---HHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3435666765544 58888888888887 78899999998888765432 3345566777888888777888889
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-ChhHHHHHHHHHHHHcc
Q 038250 323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-SDLATEFAVSILWKLCK 377 (444)
Q Consensus 323 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~ 377 (444)
+..|+.+|..+-....+-+.. ....|+.+++++ +..++..| |.+|.-
T Consensus 149 R~eAv~~L~~~Qe~~~neen~-----~~n~l~~~vqnDPS~EVRr~a---llni~v 196 (885)
T COG5218 149 RREAVKVLCYYQEMELNEENR-----IVNLLKDIVQNDPSDEVRRLA---LLNISV 196 (885)
T ss_pred HHHHHHHHHHHHhccCChHHH-----HHHHHHHHHhcCcHHHHHHHH---HHHeee
Confidence 999999998876432222221 123566666653 55555543 456554
No 400
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=56.50 E-value=1.4e+02 Score=29.81 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=96.7
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc---CC------CChHHHHHHHHHHHHHh
Q 038250 220 RCMVWFLKSGD-LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK---EP------ICPTATKASLVVVYRTI 289 (444)
Q Consensus 220 ~~Lv~lL~~~~-~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~---~~------~~~~~~~~a~~aL~~L~ 289 (444)
..+...|..+- ...+.....+++-| +.+...-+.+ ....-+..|+.+.+ .. .+..+...++.+|.|+.
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrIL-SRdk~~L~~~-~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRIL-SRDKDGLEPL-TNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHH-hccccccccc-cchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 34556666664 44555566677777 4544333333 11223333333322 11 13467888999999999
Q ss_pred cCCCCCCchhHHHHhcCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhc---
Q 038250 290 TSASATEKPIQKFVDMGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRV--- 360 (444)
Q Consensus 290 ~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~--- 360 (444)
.+.+ ..+..+.+...+..+++.+... ...+.-.-+.+|.-|.. ..+.|.+++.+.+|++.+.+.+...
T Consensus 126 f~Sq---~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgi 202 (532)
T KOG4464|consen 126 FHSQ---RAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGI 202 (532)
T ss_pred hccH---HHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccC
Confidence 8876 4667778887888887776521 23344555666665543 5678888889999999999988641
Q ss_pred -C-----h---h---HHHHHHHHHHHHccccc
Q 038250 361 -S-----D---L---ATEFAVSILWKLCKNEE 380 (444)
Q Consensus 361 -~-----~---~---~~~~a~~~L~~L~~~~~ 380 (444)
+ + . ..-.|+.++.|++..+.
T Consensus 203 dse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 203 DSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 1 1 1 12467788888887654
No 401
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=56.18 E-value=4.7 Score=37.71 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=34.3
Q ss_pred cccccccccCcC-c--eecCCcchhcHHHHHHHHHh---------------------cCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKD-P--VTLSTGITYDRENIEKWIHE---------------------DGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~-P--v~~~cg~~~c~~ci~~~~~~---------------------~~~~~CP~c~~~~~ 83 (444)
--|.||+.=|-+ | +.+.|-|-|...|+.+|+.. +....||+|+..+.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 479999887764 3 34589999999999988741 01246999997765
No 402
>PRK04023 DNA polymerase II large subunit; Validated
Probab=55.38 E-value=10 Score=41.71 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=32.2
Q ss_pred ccccccccccCcCceecCCcc-----hhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 36 HFRCPISLDLMKDPVTLSTGI-----TYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~-----~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
...||-|.........-.||. .||..|-.. .+...||.|+......
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~----~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE----VEEDECEKCGREPTPY 676 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccccCc----CCCCcCCCCCCCCCcc
Confidence 369999999864433335885 499999332 3457799999887654
No 403
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=55.19 E-value=6.2 Score=26.69 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=13.8
Q ss_pred CcCCCCCCccccccccc
Q 038250 28 EMELTTPNHFRCPISLD 44 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~ 44 (444)
..+..+|+++.||+|..
T Consensus 26 t~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 26 TPFEDLPDDWVCPVCGA 42 (50)
T ss_pred CCHhHCCCCCCCCCCCC
Confidence 34667899999999975
No 404
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=54.99 E-value=73 Score=34.00 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ch----hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSS---DH----RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~---~~----~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
+..++.+|.+.+-..|.....++.|+... ++ .+++.+ ...+..|+.-+.+. +|.++..|+..+..++.-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~---~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl 376 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKL---NDLVGLLVERLSDT-YPYTRTKALQVLEKIFDL 376 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHH---HHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhC
Confidence 57788899999888888888888888432 22 222233 23444444445555 788999999988888766
Q ss_pred CCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 292 ASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 292 ~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+. +..=-++.++...+..|.+.+.-++.+|+.+++.|..
T Consensus 377 ~s-----k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 377 NS-----KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cc-----cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 43 1111223456667777888888888999988887753
No 405
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=54.74 E-value=8.2 Score=26.91 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=19.4
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
.|.||-|.+...- . |..|-+ ....+.||.|+.
T Consensus 25 ~F~CPnCG~~~I~----R-----C~~CRk----~~~~Y~CP~CGF 56 (59)
T PRK14890 25 KFLCPNCGEVIIY----R-----CEKCRK----QSNPYTCPKCGF 56 (59)
T ss_pred EeeCCCCCCeeEe----e-----chhHHh----cCCceECCCCCC
Confidence 4888888765211 1 444533 234578999975
No 406
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=53.94 E-value=1.8e+02 Score=30.57 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=35.5
Q ss_pred CcHHHHHHHHh-c--CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-CChHHHHHHHHHHH
Q 038250 217 SSMRCMVWFLK-S--GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-ICPTATKASLVVVY 286 (444)
Q Consensus 217 g~i~~Lv~lL~-~--~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~ 286 (444)
..++.|..++. . .+..+|..|+++|..++...++ .+ -+.|+.++.+. .+++++..|..+|.
T Consensus 477 ~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~---~v------~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 477 SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR---KV------QEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch---HH------HHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 34556666665 2 2467899999999998533332 22 24456666554 34566665554443
No 407
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=52.93 E-value=2.3e+02 Score=28.42 Aligned_cols=88 Identities=13% Similarity=0.038 Sum_probs=58.8
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh-hcccCC
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT-YLGSAS 217 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~-~i~~~g 217 (444)
|.++..+|++.|.++.-+++..|....+......+.+.+....+..- -.++..-=++.|..+.......|. .+.+.+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~--~~~~~~~dlrLLflltale~~~Rsql~~~l~ 187 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNF--PKDSSIFDLRLLFLLTALETDHRSQLIAELL 187 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CccchhhHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 55788999999999999999999999888777777776643221100 112333334445433334445555 456789
Q ss_pred cHHHHHHHHhc
Q 038250 218 SMRCMVWFLKS 228 (444)
Q Consensus 218 ~i~~Lv~lL~~ 228 (444)
|++.+..+|.+
T Consensus 188 Gl~~lt~~led 198 (532)
T KOG4464|consen 188 GLELLTNWLED 198 (532)
T ss_pred ccHHHHHHhhc
Confidence 99999999864
No 408
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.71 E-value=19 Score=28.61 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchH
Q 038250 277 ATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLC 323 (444)
Q Consensus 277 ~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~ 323 (444)
-.......+..|+...+ .-..+++.|+++.|+.||.+.+.++.
T Consensus 62 dLd~~Ik~l~~La~~P~----LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPE----LYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHHccCChh----HHHHHHHcCCHHHHHHHHCCCCccee
Confidence 45556777888998876 88889999999999999988776654
No 409
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=52.61 E-value=79 Score=26.38 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=55.6
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChH---HHHHHHHHHHHHhcC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPT---ATKASLVVVYRTITS 291 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~---~~~~a~~aL~~L~~~ 291 (444)
.++..|..-|.++++.++..|+.+|-.+.... +.....++. ..++..|+.++....... +++.++..|...+..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~-~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVAS-KEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH-HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 34677778888899999999999999997654 466677744 589999999988653433 788888777765543
No 410
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=52.31 E-value=83 Score=25.07 Aligned_cols=70 Identities=21% Similarity=0.149 Sum_probs=49.1
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHH-----HhcCCChHHHHHHHHHHHHH
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLL-----LQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~l-----l~~~~~~~~k~~a~~ll~~l 422 (444)
+..|.+-|.+.+..++-.|+.+|-.|..+ +.+....++.....+..++.+ .....+..+|+++..++...
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN---~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKN---CGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHH---ccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 44555666667888999999999999997 446677777666677666653 11223578888888877654
No 411
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=51.70 E-value=2.3e+02 Score=27.31 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh-----hcccCCcHHHHHHHHhcCCHHHHHH
Q 038250 162 RCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT-----YLGSASSMRCMVWFLKSGDLSRRRN 236 (444)
Q Consensus 162 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~-----~i~~~g~i~~Lv~lL~~~~~~~~~~ 236 (444)
..+.++|..+.|+..|-.. +-+.+..++.+...++..+-..|. ...+...+..|+.--.. .+++--.
T Consensus 73 qef~~~~~l~~lI~~l~~l-------~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~ 144 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKL-------EFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALT 144 (342)
T ss_pred HHHHhCCchHHHHHhhhcc-------cchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHH
Q ss_pred HHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc----HHHHH
Q 038250 237 AVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL----VSLLL 312 (444)
Q Consensus 237 A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~----v~~Lv 312 (444)
+-..|... ...+...+.| -...-.......++.+ +-++...|..+...+.+.+. .....+....- .+.--
T Consensus 145 cg~mlrEc-irhe~Lakii-L~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk---~~vaEfl~~n~d~ff~e~~~ 218 (342)
T KOG1566|consen 145 CGNMLREC-IRHEFLAKII-LESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHK---SVVAEFLIRNYDNFFAEVYE 218 (342)
T ss_pred HHHHHHHH-HhhHHHHHHH-HcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhH---HHHHHHHHhChhhhHHHHHH
Q ss_pred HHhhccccchHHHHHHHHHHhcCChhhHHHH---hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHH
Q 038250 313 EMLVDAQRSLCEKALSVLDGLCSSDYGRGDA---YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAE 389 (444)
Q Consensus 313 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 389 (444)
.++.+++--++..+..+|+.+-....+...+ +.....+..++.+|+..+...|-.|-.+.+-...+..- ++-+..
T Consensus 219 ~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK--~q~V~~ 296 (342)
T KOG1566|consen 219 KLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK--PQPVRD 296 (342)
T ss_pred HHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC--CchHHH
Q ss_pred HHhhChHHHHHHHHhc
Q 038250 390 ALQVGAFQKLLLLLQV 405 (444)
Q Consensus 390 ~~~~g~l~~Ll~ll~~ 405 (444)
+.-.+= ++|++++..
T Consensus 297 IL~~Nr-~KLl~~l~~ 311 (342)
T KOG1566|consen 297 ILVRNR-PKLLELLHD 311 (342)
T ss_pred HHHhCc-HHHHHHHHH
No 412
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=51.49 E-value=6.8 Score=26.08 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.3
Q ss_pred CcCCCCCCccccccccc
Q 038250 28 EMELTTPNHFRCPISLD 44 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~ 44 (444)
-.+..+|+++.||+|..
T Consensus 26 t~F~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 26 TPFEDLPDDWVCPVCGA 42 (47)
T ss_dssp --GGGS-TT-B-TTTSS
T ss_pred CCHHHCCCCCcCcCCCC
Confidence 45778999999999974
No 413
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=50.49 E-value=2e+02 Score=26.31 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFL-KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ 267 (444)
.+........++.++...++ .-...++.+..+| +.+++..+..|..+|..|+. .+.+ +-...-..+..
T Consensus 98 ~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~-----~~vv-d~~s~w~vl~~ 166 (234)
T PF12530_consen 98 WECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE-----AEVV-DFYSAWKVLQK 166 (234)
T ss_pred HHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-----Hhhc-cHHHHHHHHHH
Confidence 33334434455545565555 1134578888888 67788888889999999961 1122 22233344444
Q ss_pred HhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc
Q 038250 268 LIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ 319 (444)
Q Consensus 268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~ 319 (444)
-|..+..|.+.+..+..+..+....- +..........++..+-++....+
T Consensus 167 ~l~~~~rp~v~~~l~~l~~l~~~~~~--~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 167 KLSLDYRPLVLKSLCSLFALVPQGAV--DSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred hcCCccchHHHHHHHHHHHHhccccC--ChhhhhHHHHHHHHHHHhhccccc
Confidence 44444456666654444444433332 123333344445555555555433
No 414
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=50.13 E-value=22 Score=37.98 Aligned_cols=49 Identities=4% Similarity=-0.043 Sum_probs=34.7
Q ss_pred CCccccccccccCcCce----ec---CCcchhcHHHHHHHHHh----cCCCCCCCCCccc
Q 038250 34 PNHFRCPISLDLMKDPV----TL---STGITYDRENIEKWIHE----DGNITCPVTNRVL 82 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv----~~---~cg~~~c~~ci~~~~~~----~~~~~CP~c~~~~ 82 (444)
.+.-+|++|.--+.+|+ +. .|+|.||..||..|... ..+..|+.|..-+
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 44468999998888854 22 39999999999999842 2245667775433
No 415
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.01 E-value=7.6 Score=35.01 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=28.6
Q ss_pred cccccccCcCceecCCcc-hhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 39 CPISLDLMKDPVTLSTGI-TYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 39 Cpic~~~~~~Pv~~~cg~-~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
|-.|.+-=..=+++||.| .+|..|- .+...||.|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~------~~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICD------ESLRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccc------ccCccCCCCcChhh
Confidence 888888777755669997 5888882 23567999986553
No 416
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=49.33 E-value=37 Score=30.44 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=44.6
Q ss_pred hhhcccCCcHHHHHHHHhcC---C---------------HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC
Q 038250 210 LTYLGSASSMRCMVWFLKSG---D---------------LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE 271 (444)
Q Consensus 210 ~~~i~~~g~i~~Lv~lL~~~---~---------------~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~ 271 (444)
+..+.+.|++..++.+|+.. . .++-..+...|..++.++.+|...+.. -++.++..+..
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~---~~~~l~~~~~~ 112 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK---HLDFLISIFMQ 112 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH---HHH-----HHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH---HHhHHHHHHHH
Confidence 33555677777777777542 1 345678899999999888899998843 35544444333
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250 272 PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 272 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 337 (444)
. ....--.++.+|..+-.++. +....+.+. .|..++++|..... ...-+..|..|+.+.
T Consensus 113 ~-~~~~~~~~~d~l~~i~~dN~---~L~~~i~e~-~I~~~i~ll~~~gr--~~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 113 L-QIGYGLGALDVLTEIFRDNP---ELCESISEE-HIEKFIELLRKHGR--QPRYLDFLSSLCVCN 171 (207)
T ss_dssp C-CH-TTHHHHHHHHHHHTT----------------------------------------------
T ss_pred h-hccCCchHHHHHHHHHHCcH---HHHHHhhHH-HHHHHHHHHHHcCC--ChHHHHHHhhhcccC
Confidence 2 01111235666777776653 355555554 49999999976332 244677777777643
No 417
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=49.24 E-value=11 Score=26.86 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=8.8
Q ss_pred hhcHHHHHHHHH
Q 038250 57 TYDRENIEKWIH 68 (444)
Q Consensus 57 ~~c~~ci~~~~~ 68 (444)
.|||.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 418
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.13 E-value=1.5e+02 Score=29.10 Aligned_cols=65 Identities=3% Similarity=0.005 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh
Q 038250 236 NAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK-EPICPTATKASLVVVYRTITSASATEKPIQKFVD 304 (444)
Q Consensus 236 ~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~ 304 (444)
+....|.+|+..++++...+ .+-||++.++.-.. ++.+|-.++....++++|..++. +|+..+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~v-rel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~---~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLV-RELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNI---ENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHH-HhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcch---hhHHHHhc
Confidence 46778999999999999999 66788887765433 33479999999999999998875 56666543
No 419
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=48.78 E-value=2.1 Score=40.94 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=21.8
Q ss_pred cccccccccCcCceecCC---c--chhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 37 FRCPISLDLMKDPVTLST---G--ITYDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~c---g--~~~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
-.||+|+..-.--++..- | +-+|..|-.+|- .....||.|+..-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~--~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWR--FVRIKCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---S
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeee--ecCCCCcCCCCCC
Confidence 599999987665555543 5 458999988886 4556899998643
No 420
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=48.77 E-value=1.4e+02 Score=25.00 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=55.0
Q ss_pred hHHHHHHHhh-cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH-HHHHHhcCC--ChHHHHHHHHHHHHHHhh
Q 038250 350 FPVIVKKILR-VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK-LLLLLQVGC--ADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 350 i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~-Ll~ll~~~~--~~~~k~~a~~ll~~l~~~ 425 (444)
+..|-+-|.. .++.++..|+.+|-.+..+.+ .....++...+.+.. |+.++.... ...+|++...+++..+..
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG---~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCG---HRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 4455555553 467788889999988888753 456666777889987 999886432 358899988888887765
Q ss_pred ccCCC
Q 038250 426 RARLE 430 (444)
Q Consensus 426 ~~~~~ 430 (444)
-.+.|
T Consensus 117 f~~~~ 121 (141)
T cd03565 117 FRGSP 121 (141)
T ss_pred hCCCc
Confidence 54433
No 421
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=48.11 E-value=13 Score=30.78 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=28.7
Q ss_pred ccccccccccCcC--cee-cCCc------chhcHHHHHHHHHhcCCCCCCCC
Q 038250 36 HFRCPISLDLMKD--PVT-LSTG------ITYDRENIEKWIHEDGNITCPVT 78 (444)
Q Consensus 36 ~~~Cpic~~~~~~--Pv~-~~cg------~~~c~~ci~~~~~~~~~~~CP~c 78 (444)
...|.||.+...+ -|+ +.|| +-||..|+.+|- +.....|-=
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~--~~~~rDPfn 75 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR--RERNRDPFN 75 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH--hhccCCCcc
Confidence 4579999999888 433 3565 569999999996 333444543
No 422
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=48.05 E-value=9.9 Score=32.24 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=11.7
Q ss_pred CCCCCCCCCcccCCC
Q 038250 71 GNITCPVTNRVLTSF 85 (444)
Q Consensus 71 ~~~~CP~c~~~~~~~ 85 (444)
+.+.||.|+..+...
T Consensus 122 ~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 122 GTFTCPRCGEELEED 136 (147)
T ss_pred CcEECCCCCCEEEEc
Confidence 458999999888643
No 423
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.38 E-value=1.6e+02 Score=29.13 Aligned_cols=134 Identities=7% Similarity=0.053 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccC----
Q 038250 141 AGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA---- 216 (444)
Q Consensus 141 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~---- 216 (444)
..+..|..-|+.+++..... +.. -....+-.+|..+.... ..+...++.|+..+..+.......+.-+.+.
T Consensus 226 TrR~AA~dfl~~L~~~~~~~---v~~-i~~~~i~~~l~~y~~~~-~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQ---VTS-ILMQYIQQLLQQYASNP-SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHH-T-TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CcHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHHHhhCC-cccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 35667778888888653221 111 01122333443221111 2245667777777764444332222212111
Q ss_pred CcHHHHH----HHHh---cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHH
Q 038250 217 SSMRCMV----WFLK---SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVV 285 (444)
Q Consensus 217 g~i~~Lv----~lL~---~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL 285 (444)
+....+. .-|. +..+-++..|++.+....+. -.++.+ .+++|.|+..|.++ +.-+...|+.++
T Consensus 301 ~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~--l~~~~l---~~~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ--LPKEQL---LQIFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG--S-HHHH---HHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh--CCHHHH---HHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence 1111111 2233 23577888899999888432 234555 47899999999988 666777777654
No 424
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=47.11 E-value=16 Score=37.19 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=47.0
Q ss_pred ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 317 DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 317 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
..++++++.|..++.+++-+.++|...+-+...-..+++++....+++-+.+..++..+..
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 4578899999999999999999988775666666777777776666776777777666543
No 425
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=46.75 E-value=1.1e+02 Score=30.33 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-ccchHH-HHHHHHHHhcCChhh
Q 038250 262 IEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-QRSLCE-KALSVLDGLCSSDYG 339 (444)
Q Consensus 262 i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~-~a~~~L~~L~~~~~~ 339 (444)
+..+++=++.+.....++.++--|..-+.+.+ .+..+.+.|.++.+++.+.+. +..+.. .++.+++.|+.....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~----Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQ----FRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHH----HHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 55566666644345788888888888888876 999999999999999999643 332333 334444445543322
Q ss_pred HHHHhcCCCChHHHHHHHh
Q 038250 340 RGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 340 ~~~i~~~~g~i~~Lv~ll~ 358 (444)
- .+..+.+.+..+++++.
T Consensus 99 ~-~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 99 M-HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred h-hhhhchhHHHHHHHHhc
Confidence 2 22244455555555554
No 426
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=46.67 E-value=3.4e+02 Score=27.80 Aligned_cols=112 Identities=6% Similarity=-0.053 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHH
Q 038250 141 AGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMR 220 (444)
Q Consensus 141 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~ 220 (444)
..+.+|+..|....+.-+- ..|+.+...-+..-+. ....+++..++..|...+..+.. +......
T Consensus 5 ~~R~~a~~~l~~~i~~~~~--------~~i~~iW~~~~DLi~~--~~p~e~R~~~~~ll~~~i~~~~~-~~~~~R~---- 69 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL--------SSIEEIWYAAKDLIDP--NQPSEARRAALELLIACIKRQDS-SSGLMRA---- 69 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc--------hHHHHHHHHHhhhcCC--CCCHHHHHHHHHHHHHHHHcccc-ccHHHHH----
Confidence 3555666666665544321 3455555554332111 12366788888877744443332 1111111
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc
Q 038250 221 CMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK 270 (444)
Q Consensus 221 ~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~ 270 (444)
.+-..+. ...++.-..-..+|..|+....+. ..+ ..+..+.|...|.
T Consensus 70 ~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~--~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 70 EFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFF--EYEIGPFLLSWLE 117 (464)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhc--ccchHHHHHHHHH
Confidence 1111222 233444455677777884332222 333 4578888887775
No 427
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.65 E-value=1.1e+02 Score=28.87 Aligned_cols=73 Identities=8% Similarity=0.048 Sum_probs=48.6
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhH-HHhhcccccHHHHHH----Hhc-------CCCChHHHHHHHHH
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKV-NVLLDIEGAIEPLFK----LIK-------EPICPTATKASLVV 284 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~-~~i~~~~g~i~~Lv~----ll~-------~~~~~~~~~~a~~a 284 (444)
-.+|.++.++++.+++.|..++.+|.++....+... ..+ ...|....+-+ ++. ...+......+..+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L-~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDIL-RRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHH-HHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 458999999999999999999999999965444322 123 33454443333 332 11245677888888
Q ss_pred HHHHhc
Q 038250 285 VYRTIT 290 (444)
Q Consensus 285 L~~L~~ 290 (444)
|..|+.
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 888854
No 428
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.06 E-value=9.5 Score=37.98 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=32.1
Q ss_pred CCccccccccccCc-----CceecCCcchhcHHHHHHHHHhcCCCCCCCC
Q 038250 34 PNHFRCPISLDLMK-----DPVTLSTGITYDRENIEKWIHEDGNITCPVT 78 (444)
Q Consensus 34 ~~~~~Cpic~~~~~-----~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c 78 (444)
..+..||.|+-... ..++-.|||-||..|.-.|. .+...|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~--~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWK--THNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchh--hCCccccCc
Confidence 44678999988765 56777899999999999988 444445443
No 429
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=45.75 E-value=17 Score=24.72 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=14.2
Q ss_pred CCcchhcHHHHHHHHHhcCCCCCCCCC
Q 038250 53 STGITYDRENIEKWIHEDGNITCPVTN 79 (444)
Q Consensus 53 ~cg~~~c~~ci~~~~~~~~~~~CP~c~ 79 (444)
.|++.||..| .-++ .+....||-|.
T Consensus 26 ~C~~~FC~dC-D~fi-HE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDC-DVFI-HETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHH-HHTT-TTTS-SSSTT-
T ss_pred CCCCccccCc-Chhh-hccccCCcCCC
Confidence 6889999999 3344 35557899884
No 430
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=45.62 E-value=2.3e+02 Score=30.60 Aligned_cols=137 Identities=14% Similarity=0.117 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.|.+++..|.+. |..+..++-..+.++...+... . .+..||+.-- +.+ + ..|+.+|. .
T Consensus 5 ~~~~l~~~l~s~----~~~~~~~~~~~~~~~~~~~~~~---~----l~~~l~~y~~--~t~----s----~~~~~il~-~ 62 (668)
T PF04388_consen 5 SITELLSLLESN----DLSVLEEIKALLQELLNSDREP---W----LVNGLVDYYL--STN----S----QRALEILV-G 62 (668)
T ss_pred cHHHHHHHhcCC----chhhHHHHHHHHHHHhhccchH---H----HHHHHHHHHh--hcC----c----HHHHHHHH-h
Confidence 477888888886 7777777777777666443221 1 2444554431 112 1 13445554 1
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
+ ..+..|.. +..|=..+. .+..|..+..+|+.+....+.....| .....++.|+++|..+.+..+...|+
T Consensus 63 ~-~~P~~K~~------~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i-~~t~Lf~~LLk~L~~D~~~~~~~~al 132 (668)
T PF04388_consen 63 V-QEPHDKHL------FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKI-LQTPLFKSLLKCLQFDTSITVVSSAL 132 (668)
T ss_pred c-CCccHHHH------HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHH-hcChhHHHHHHHHhhcccHHHHHHHH
Confidence 2 12222322 334444443 45678889999999988788888888 55799999999999876778888888
Q ss_pred HHHHHHhcC
Q 038250 283 VVVYRTITS 291 (444)
Q Consensus 283 ~aL~~L~~~ 291 (444)
.+|.-|-=.
T Consensus 133 ~~LimlLP~ 141 (668)
T PF04388_consen 133 LVLIMLLPH 141 (668)
T ss_pred HHHHHHhcc
Confidence 888777543
No 431
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=44.41 E-value=64 Score=27.39 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 308 VSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
|.+|+++|.+.+..+...|+.+|.+-.-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 7888888988888888888888886543
No 432
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=43.27 E-value=3.1e+02 Score=26.44 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhccc---------C--CcHHHHHHHHh------cCCHHHHHHHHHHHHHHHhcchhh
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLGS---------A--SSMRCMVWFLK------SGDLSRRRNAVLVLREIVSSDHRK 251 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~---------~--g~i~~Lv~lL~------~~~~~~~~~A~~~L~~L~s~~~~~ 251 (444)
-+++..|+.++...+..+++.|..+.+ . +....|...|- +.++....-|+.+|.++...+++.
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 445556666665555555555543210 1 11112444443 335666678999999998888888
Q ss_pred HHHhhcc-----------cccHHHHHHHhcC----CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc-CcHHHHHHHh
Q 038250 252 VNVLLDI-----------EGAIEPLFKLIKE----PICPTATKASLVVVYRTITSASATEKPIQKFVDM-GLVSLLLEML 315 (444)
Q Consensus 252 ~~~i~~~-----------~g~i~~Lv~ll~~----~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~-g~v~~Lv~lL 315 (444)
|+.+... ...|+.+..+|.. +.++.++-.-+..|..-..++. .....+.+. +.++.|++..
T Consensus 132 Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p---~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 132 KEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECP---DAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-H---HHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCH---HHHHHHHcCcchHHHHHHHh
Confidence 8766332 1234445555544 2234444433443333333332 356666665 5799999986
Q ss_pred hc-c--ccchHHHHHHHHHHh
Q 038250 316 VD-A--QRSLCEKALSVLDGL 333 (444)
Q Consensus 316 ~~-~--~~~~~~~a~~~L~~L 333 (444)
.. . +.-++--++.+|+..
T Consensus 209 ~~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHH
Confidence 42 2 333444444444433
No 433
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=43.22 E-value=4.6e+02 Score=28.59 Aligned_cols=122 Identities=13% Similarity=0.014 Sum_probs=76.2
Q ss_pred cCchHHHHHHHHhhcccccc-cchHHHHHHHHHHHhhcCC-Chh-hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038250 167 NGAVSVLAEAFETFSKTCLD-ENVSVLEEILSTLTLLFPL-AGE-GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLRE 243 (444)
Q Consensus 167 ~G~i~~Lv~lL~~~~~~~~~-~~~~~~~~a~~~L~~~l~~-~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~ 243 (444)
.|.++.+++.|..+..+..+ .++...+.|++.+..+.+. +.. --.-+.+.=.++.++..+++..--.+..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 58899999999544222212 3455566777777633221 111 11123333446667777778778889999999998
Q ss_pred HHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 244 IVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 244 L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
+ +.+ .+..- ....+.......+++. +..++-.|+-||..+-.+++
T Consensus 487 ~-eeD--fkd~~-ill~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~q 531 (970)
T COG5656 487 I-EED--FKDNG-ILLEAYENTHNCLKNN-HLPVMIEAALALQFFIFNEQ 531 (970)
T ss_pred H-HHh--cccch-HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhchh
Confidence 8 432 22222 1235566777778775 67788888888998888765
No 434
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=43.13 E-value=2.9e+02 Score=27.10 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=62.8
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCC
Q 038250 126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPL 205 (444)
Q Consensus 126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~ 205 (444)
.....+.+.+.+++...+..|+..|+.-..-.+ .+|-++.++........+.+.......+..+..++.+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~----------LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRTDPGLQQ----------LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccCCCchh----------hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 333444333333356666666666654332211 5677777774321110010244444455555533333
Q ss_pred ChhhhhhcccCCcHHHHHHHHh----------cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC
Q 038250 206 AGEGLTYLGSASSMRCMVWFLK----------SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP 272 (444)
Q Consensus 206 ~~~~~~~i~~~g~i~~Lv~lL~----------~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~ 272 (444)
..=....-. ...+|.++..|- .++..+|+.|+.+|..++......-..+ ..-++..|.+.+.++
T Consensus 248 ~~l~le~Yl-h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l--~~ri~~tl~k~l~d~ 321 (343)
T cd08050 248 PNLHLEPYL-HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL--QPRITRTLLKALLDP 321 (343)
T ss_pred CCCchHHhH-HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHHcCC
Confidence 221111111 125666665552 1246889999999999964332211112 123344555555554
No 435
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=42.98 E-value=25 Score=30.85 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=20.6
Q ss_pred cCCCCCCCCCcccCCCC-CCccHHHHHHHHHHHHh
Q 038250 70 DGNITCPVTNRVLTSFE-PIPNHTIRRMIQDWCVE 103 (444)
Q Consensus 70 ~~~~~CP~c~~~~~~~~-l~~n~~l~~~i~~~~~~ 103 (444)
...|.||.|+.++...+ -..-..++..|+.....
T Consensus 134 ~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 134 EYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred hcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 35789999999886543 11123455666555443
No 436
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=42.86 E-value=1.8e+02 Score=31.16 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWF-LKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLF 266 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv 266 (444)
+..+|+.++.++. .+...-+ ...+..-.+|.|-.+ ++..+..++.+++.++..+. ..-+.. .+ ...+.++.
T Consensus 402 ~~~iQ~~~L~~lp-tv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-q~lD~~-~v---~d~~lpi~ 473 (700)
T KOG2137|consen 402 DVQIQELALQILP-TVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI-QRLDKA-AV---LDELLPIL 473 (700)
T ss_pred chhhHHHHHHhhh-HHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-HHHHHH-Hh---HHHHHHHH
Confidence 6889999999887 3332222 233334456766665 34457899999999999994 222222 22 24466666
Q ss_pred HHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccch--HHHHHHHHHHhcC
Q 038250 267 KLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSL--CEKALSVLDGLCS 335 (444)
Q Consensus 267 ~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~--~~~a~~~L~~L~~ 335 (444)
+..+.. ++..+...+.+..++..... ....++-..++|.++-+...+.-.. -...+..+..+..
T Consensus 474 ~~~~~~-dp~iv~~~~~i~~~l~~~~~----~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~ml~ 539 (700)
T KOG2137|consen 474 KCIKTR-DPAIVMGFLRIYEALALIIY----SGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLMLS 539 (700)
T ss_pred HHhcCC-CcHHHHHHHHHHHHHHhhcc----cceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHh
Confidence 767666 68888878887777777664 4345556678888888876553222 2334444444444
No 437
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=42.53 E-value=2e+02 Score=27.18 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=51.2
Q ss_pred cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHH---HHhcCcHHHHHHHhh------------ccccchH
Q 038250 259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQK---FVDMGLVSLLLEMLV------------DAQRSLC 323 (444)
Q Consensus 259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~---i~~~g~v~~Lv~lL~------------~~~~~~~ 323 (444)
.=++|+++.++.+. +++.+..++.+|..+...-. ... +.+.|..+.+-+.|. +.+..+.
T Consensus 118 ~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~-----~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 118 PLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVP-----AAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCC-----hhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 35789999999998 89999999999999988754 334 666776665555443 1234466
Q ss_pred HHHHHHHHHhcC
Q 038250 324 EKALSVLDGLCS 335 (444)
Q Consensus 324 ~~a~~~L~~L~~ 335 (444)
..+..+|..|+.
T Consensus 192 ~~ay~~L~~L~~ 203 (282)
T PF10521_consen 192 QAAYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHHHH
Confidence 777777777743
No 438
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=42.48 E-value=4.1 Score=30.43 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=28.3
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|-||.+...+| |.+||..|-++- ..|-.|++.+.
T Consensus 55 ~kC~iCk~~vHQ~-----GshYC~tCAY~K------giCAMCGKki~ 90 (100)
T KOG3476|consen 55 AKCRICKQLVHQP-----GSHYCQTCAYKK------GICAMCGKKIL 90 (100)
T ss_pred chhHHHHHHhcCC-----cchhHhHhhhhh------hHHHHhhhHhh
Confidence 4899999999887 878999997652 25888886654
No 439
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=42.40 E-value=5.8 Score=37.97 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=30.5
Q ss_pred ccccccccccCcCceec----CCc--chhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250 36 HFRCPISLDLMKDPVTL----STG--ITYDRENIEKWIHEDGNITCPVTNRV 81 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~----~cg--~~~c~~ci~~~~~~~~~~~CP~c~~~ 81 (444)
.-.||+|+..-.--++. .-| +-+|..|-.+|- -....||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~--~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWH--YVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccc--ccCccCCCCCCC
Confidence 35999999875433332 234 457888988886 456789999864
No 440
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=41.94 E-value=2e+02 Score=29.64 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=51.1
Q ss_pred hhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcch-------------hhHHHhhcccccHHHHHHHhcCCCCh
Q 038250 210 LTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDH-------------RKVNVLLDIEGAIEPLFKLIKEPICP 275 (444)
Q Consensus 210 ~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~-------------~~~~~i~~~~g~i~~Lv~ll~~~~~~ 275 (444)
...+.+.+.|+.|+.+|+.. +.+.+.+|+.+|..|..... ..-..+ .....|..|+..+-.+...
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L-~S~~~v~~Ll~~mL~~~~~ 133 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQL-VSEETVEKLLDIMLNSQGG 133 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHH-hChHHHHHHHHHHhcCCCc
Confidence 34555789999999999744 68889999988888854321 223334 3345666666554431124
Q ss_pred HHHHHHHHHHHHHhcC
Q 038250 276 TATKASLVVVYRTITS 291 (444)
Q Consensus 276 ~~~~~a~~aL~~L~~~ 291 (444)
....+++..+..|.+.
T Consensus 134 s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 134 SSLVNGVSILIELIRK 149 (475)
T ss_pred chHHHHHHHHHHHHHh
Confidence 5666667667666533
No 441
>PF04641 Rtf2: Rtf2 RING-finger
Probab=41.88 E-value=21 Score=33.53 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=33.5
Q ss_pred CCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhc
Q 038250 31 LTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHED 70 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~ 70 (444)
.....+..|.++++.|..||.. .-|+-|-+..|.+|+...
T Consensus 29 ~~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 29 EREARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred HhhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 3445578999999999999865 689999999999998543
No 442
>PRK00420 hypothetical protein; Validated
Probab=41.61 E-value=14 Score=29.67 Aligned_cols=14 Identities=43% Similarity=1.032 Sum_probs=9.9
Q ss_pred cCCCCCCCCCcccC
Q 038250 70 DGNITCPVTNRVLT 83 (444)
Q Consensus 70 ~~~~~CP~c~~~~~ 83 (444)
.|...||.|+..+.
T Consensus 38 ~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 38 DGEVVCPVHGKVYI 51 (112)
T ss_pred CCceECCCCCCeee
Confidence 45567899987654
No 443
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=41.29 E-value=1.3e+02 Score=29.32 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhcCCChhhhhhccc--CCcHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcchhhHHHh---h--cccc
Q 038250 191 VLEEILSTLTLLFPLAGEGLTYLGS--ASSMRCMVWFLKSG---DLSRRRNAVLVLREIVSSDHRKVNVL---L--DIEG 260 (444)
Q Consensus 191 ~~~~a~~~L~~~l~~~~~~~~~i~~--~g~i~~Lv~lL~~~---~~~~~~~A~~~L~~L~s~~~~~~~~i---~--~~~g 260 (444)
++-.|+.+|. .+..+......+.+ .+.+..|+++++.+ ...++..|..+|..|+.........+ | ..+|
T Consensus 238 iRllAi~~l~-~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 238 IRLLAIANLV-YIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHH-hhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 4555666665 34444444445544 44999999999865 47889999999999965444333322 1 2456
Q ss_pred cHHHHHH
Q 038250 261 AIEPLFK 267 (444)
Q Consensus 261 ~i~~Lv~ 267 (444)
+++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6666554
No 444
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=41.28 E-value=18 Score=25.18 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=8.1
Q ss_pred CCCCCCCCCcc
Q 038250 71 GNITCPVTNRV 81 (444)
Q Consensus 71 ~~~~CP~c~~~ 81 (444)
..+.||.|+..
T Consensus 49 ~~Y~Cp~CGF~ 59 (61)
T COG2888 49 NPYRCPKCGFE 59 (61)
T ss_pred CceECCCcCcc
Confidence 44789999753
No 445
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=41.23 E-value=5.2e+02 Score=28.40 Aligned_cols=209 Identities=14% Similarity=0.074 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHH
Q 038250 187 ENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLF 266 (444)
Q Consensus 187 ~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv 266 (444)
+.+.++......+.......+..........-+|.++.+-...+..++....+.+.-++.. .+...+ . +.+.
T Consensus 449 e~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q--~~~~~~-~-----~~~~ 520 (759)
T KOG0211|consen 449 EDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ--LGVEFF-D-----EKLA 520 (759)
T ss_pred hhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh--hhhHHh-h-----HHHH
Confidence 3577777666544422222333333334455577777765555677777777777777422 223333 1 2233
Q ss_pred HHhc----CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchH---HHHHHHHHHhcCChhh
Q 038250 267 KLIK----EPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLC---EKALSVLDGLCSSDYG 339 (444)
Q Consensus 267 ~ll~----~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~---~~a~~~L~~L~~~~~~ 339 (444)
.++. +. ..+++++|+..+..++.... ..-...-.++.++....+++-..+ -.++..|..+.+.+-.
T Consensus 521 ~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G------~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~ 593 (759)
T KOG0211|consen 521 ELLRTWLPDH-VYSIREAAARNLPALVETFG------SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT 593 (759)
T ss_pred HHHHhhhhhh-HHHHHHHHHHHhHHHHHHhC------cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH
Confidence 3333 32 35678888887777765432 111222346666666554433333 4444455555444433
Q ss_pred HHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHH
Q 038250 340 RGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELL 419 (444)
Q Consensus 340 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll 419 (444)
.+. .+|.+..+.....+.++-+++..|..+-.. ...-...+.|.+++.-|..+.+..+|-.|--+.
T Consensus 594 ~~~------Llp~~~~l~~D~vanVR~nvak~L~~i~~~--------L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 594 CED------LLPVFLDLVKDPVANVRINVAKHLPKILKL--------LDESVRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHH------HhHHHHHhccCCchhhhhhHHHHHHHHHhh--------cchHHHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 333 367777766666778888888888777663 222333455666666666664656665555555
Q ss_pred HHHHh
Q 038250 420 KLLNP 424 (444)
Q Consensus 420 ~~l~~ 424 (444)
+.+.-
T Consensus 660 ~~i~l 664 (759)
T KOG0211|consen 660 GSIEL 664 (759)
T ss_pred HHHHH
Confidence 55543
No 446
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=40.62 E-value=8.7 Score=20.72 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=7.5
Q ss_pred cccccccccCcCc
Q 038250 37 FRCPISLDLMKDP 49 (444)
Q Consensus 37 ~~Cpic~~~~~~P 49 (444)
|.|++|...|..+
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 3566666666554
No 447
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=40.51 E-value=16 Score=37.02 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=51.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHH-HhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 265 LFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKF-VDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 265 Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i-~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+.+.+..+.++++++.|..++.+++.+.+ |+... .+...-..+++++..+.+++-+.+..++..+-.
T Consensus 332 ~lk~~~a~~n~~l~~qa~~~v~~~~~~~~----~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 332 ALKSLCAHKNPELQRQALLAVGNLAFCLE----NRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHhcccChHHHHHHHHHHHHheeccc----ccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33444344478999999999999999987 66554 456677788899988888888888888887765
No 448
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.35 E-value=17 Score=39.43 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=28.6
Q ss_pred CCCCCccccccccccC-cCcee-cCCcchhcHHHHHHHH
Q 038250 31 LTTPNHFRCPISLDLM-KDPVT-LSTGITYDRENIEKWI 67 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~-~~Pv~-~~cg~~~c~~ci~~~~ 67 (444)
..+...-.|.+|...+ ..|.. .+|||.|.+.|+.+..
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 3445556999998874 46654 4999999999999876
No 449
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=40.31 E-value=72 Score=28.57 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=51.6
Q ss_pred ccchhHhhcCchHHHHHHHHhhcccc-----------cccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHh
Q 038250 159 RNKRCIVDNGAVSVLAEAFETFSKTC-----------LDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLK 227 (444)
Q Consensus 159 ~~~~~i~~~G~i~~Lv~lL~~~~~~~-----------~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~ 227 (444)
.++..+.+.|++..++++|+..-+.. ...-.++...+...|...+..+.+|+..+.+ -++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHH
Confidence 35667888999999999997542211 0011456778888888777888888887764 2443444443
Q ss_pred cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCC
Q 038250 228 SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-ICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 228 ~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~ 292 (444)
......-..+..+|..+-.++.+....+ . ..-|..++.++... .++. -+..|..|+..+
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i-~-e~~I~~~i~ll~~~gr~~~----~L~~L~~lc~~~ 171 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESI-S-EEHIEKFIELLRKHGRQPR----YLDFLSSLCVCN 171 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT----------------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHh-h-HHHHHHHHHHHHHcCCChH----HHHHHhhhcccC
Confidence 3222222346777777767777888888 3 24599999999873 2222 355666676654
No 450
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=39.90 E-value=18 Score=23.97 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=22.5
Q ss_pred ccccccccCcCceecCCc-chhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 38 RCPISLDLMKDPVTLSTG-ITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~~cg-~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
.|--|-...+. .+.|. |-.|..|+..-+ .....||.|+.++..
T Consensus 4 nCKsCWf~~k~--Li~C~dHYLCl~CLt~ml--~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG--LIKCSDHYLCLNCLTLML--SRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS--EEE-SS-EEEHHHHHHT---SSSSEETTTTEE---
T ss_pred cChhhhhcCCC--eeeecchhHHHHHHHHHh--ccccCCCcccCcCcc
Confidence 44444433333 34464 668999999887 555679999988754
No 451
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=39.48 E-value=1.8e+02 Score=32.53 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHH
Q 038250 231 LSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSL 310 (444)
Q Consensus 231 ~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~ 310 (444)
+.++..+..+|.+++-.++..... .+|.||+-|+......++.+..-++..+|.+ -..+++ -.||-
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr------~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~-------YTam~d-~YiP~ 1010 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR------LMPMLVKELEYNTAHAIRNNIVLAMGDICSS-------YTAMTD-RYIPM 1010 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHhhhHHHHhcceeeeehhhHHH-------HHHHHH-HhhHH
Confidence 456778888999997666554443 3799999888764445555555556666643 223444 47999
Q ss_pred HHHHhhccccchHHHHHHHHHHhcCCh
Q 038250 311 LLEMLVDAQRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 311 Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 337 (444)
+-..|.++++-++..++-.|.+|...+
T Consensus 1011 I~~~L~Dp~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1011 IAASLCDPSVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999997633
No 452
>PF15616 TerY-C: TerY-C metal binding domain
Probab=39.21 E-value=12 Score=31.02 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=29.5
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
=.||-|...+--.+- .||+.+|.. ..+..+||-|++...
T Consensus 78 PgCP~CGn~~~fa~C-~CGkl~Ci~-------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCGKLFCID-------GEGEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCcChhcEEEe-cCCCEEEeC-------CCCCEECCCCCCeee
Confidence 489999998766554 899999841 345679999987654
No 453
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=39.21 E-value=3.9 Score=22.70 Aligned_cols=7 Identities=29% Similarity=0.686 Sum_probs=3.1
Q ss_pred CCCCCCc
Q 038250 74 TCPVTNR 80 (444)
Q Consensus 74 ~CP~c~~ 80 (444)
.||.|+.
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3444443
No 454
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=39.15 E-value=14 Score=31.33 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.0
Q ss_pred CccccccccccCcCceecCC
Q 038250 35 NHFRCPISLDLMKDPVTLST 54 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~~c 54 (444)
++-+||||++.-.+.|.+-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 45689999999999998854
No 455
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=38.96 E-value=2e+02 Score=23.02 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=47.7
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 038250 218 SMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 218 ~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 292 (444)
.+|.+...|. +..++.+..+..++..|++..+=..+.+ ...+..++.-.... . ..+.++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l---~~l~~~i~~~~~~~-~--~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVL---NALMESILKNWTQE-T--VQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHH---HHHHHHHHhccccc-h--hHHHHHHHHHHHHHcc
Confidence 3677888888 6678999999999999975554444444 24455555444333 1 1488999999999776
No 456
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=38.89 E-value=3.3e+02 Score=25.48 Aligned_cols=190 Identities=16% Similarity=0.126 Sum_probs=111.4
Q ss_pred CChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHH-HHhhcccccccchHHHHHHHH
Q 038250 119 VSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEA-FETFSKTCLDENVSVLEEILS 197 (444)
Q Consensus 119 ~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~l-L~~~~~~~~~~~~~~~~~a~~ 197 (444)
.+..++..++.++.+.+ .|......++..+..|.+...-.. +.+..+++- .+..... .--...+..+..
T Consensus 35 L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~------~~~~~i~~~l~~~~~~q--~~~q~~R~~~~~ 104 (262)
T PF14500_consen 35 LSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKNFSP------ESAVKILRSLFQNVDVQ--SLPQSTRYAVYQ 104 (262)
T ss_pred ccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcCCCh------hhHHHHHHHHHHhCChh--hhhHHHHHHHHH
Confidence 46678888888887766 467777777888888875433111 123333333 3211100 112445666667
Q ss_pred HHHhhcCCChhhhhhcccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC-----
Q 038250 198 TLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE----- 271 (444)
Q Consensus 198 ~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~----- 271 (444)
+|..++....+.-..+. .+.+..+++.+... +|..-..+...+..+...-+ + ....+-|.+.+..
T Consensus 105 ll~~l~~~~~~~l~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-----~---~~~~e~lFd~~~cYFPI~ 175 (262)
T PF14500_consen 105 LLDSLLENHREALQSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-----I---SEFAEDLFDVFSCYFPIT 175 (262)
T ss_pred HHHHHHHHhHHHHHhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-----c---chhHHHHHHHhhheeeee
Confidence 77644444333322222 45678888888765 78887777777777744333 2 2345556666541
Q ss_pred ----CCCh--HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 272 ----PICP--TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 272 ----~~~~--~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+.++ -.++.-..+|++.-...+ . ...-++|.|++-|.++...++..++.+|...+.
T Consensus 176 F~pp~~dp~~IT~edLk~~L~~cl~s~~-------~-fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 176 FRPPPNDPYGITREDLKRALRNCLSSTP-------L-FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred eeCCCCCCCCCCHHHHHHHHHHHhcCcH-------h-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 1122 133444444554333321 1 234489999999999999999999999988765
No 457
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=38.76 E-value=65 Score=25.94 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=31.9
Q ss_pred cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHH
Q 038250 307 LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDA 343 (444)
Q Consensus 307 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 343 (444)
+|+.|+.-|.+.+++++..|+.+|...+..++....+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~ 45 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYL 45 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHH
Confidence 6888999999999999999999999999877555555
No 458
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=38.65 E-value=15 Score=31.04 Aligned_cols=26 Identities=23% Similarity=0.703 Sum_probs=17.7
Q ss_pred CCcchhcHHHHHHHHH---------hcCCCCCCCCCcccC
Q 038250 53 STGITYDRENIEKWIH---------EDGNITCPVTNRVLT 83 (444)
Q Consensus 53 ~cg~~~c~~ci~~~~~---------~~~~~~CP~c~~~~~ 83 (444)
.+||.|. .||. ..|..+||+|+..--
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 4788885 3764 235689999986443
No 459
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=38.59 E-value=4.1e+02 Score=26.38 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=75.4
Q ss_pred ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh----c--cccchHHHHHHHHHHh
Q 038250 260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV----D--AQRSLCEKALSVLDGL 333 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~----~--~~~~~~~~a~~~L~~L 333 (444)
.-.+-+-+-++......-+.+|...|+.|+... ...+.. -....+-.+|. + .+..-++.|+.++..|
T Consensus 210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~------~~~v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~al 282 (370)
T PF08506_consen 210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKF------EKQVTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGAL 282 (370)
T ss_dssp SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHhhccccccCCcHHHHHHHHHHHHHHH------hHHHHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHH
Confidence 444444444443323567888899999998653 222221 12223333333 2 2446788999999999
Q ss_pred cCChhhHHH-------------HhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHH
Q 038250 334 CSSDYGRGD-------------AYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLL 400 (444)
Q Consensus 334 ~~~~~~~~~-------------i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll 400 (444)
+........ + ...-++|.|. -=.+..+-.+..|++.+......-+ .-.-.++++.++
T Consensus 283 a~k~~t~~~Gvt~~~~~v~v~~F-f~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------~~~l~~~~~~l~ 352 (370)
T PF08506_consen 283 ASKGSTTKSGVTQTNELVDVVDF-FSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------KEQLLQIFPLLV 352 (370)
T ss_dssp HBSS--BTTB-S-B-TTS-HHHH-HHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------HHHHHHHHHHHH
T ss_pred HhhhccccCCcccccccccHHHH-HHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------HHHHHHHHHHHH
Confidence 875432111 1 1111223221 0001245567788888777666422 112256899999
Q ss_pred HHHhcCCChHHHHHHHHH
Q 038250 401 LLLQVGCADKTKEHVSEL 418 (444)
Q Consensus 401 ~ll~~~~~~~~k~~a~~l 418 (444)
..|+++ +..+.-.||..
T Consensus 353 ~~L~~~-~~vv~tyAA~~ 369 (370)
T PF08506_consen 353 NHLQSS-SYVVHTYAAIA 369 (370)
T ss_dssp HHTTSS--HHHHHHHHHH
T ss_pred HHhCCC-Ccchhhhhhhh
Confidence 999998 88888888764
No 460
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=38.00 E-value=30 Score=27.55 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHH
Q 038250 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRR 234 (444)
Q Consensus 192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 234 (444)
...++..+. .++..++--..+++.|+++.|+.+|...|..+.
T Consensus 63 Ld~~Ik~l~-~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLS-VLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHH-HccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345566677 777788877788899999999999988876654
No 461
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=37.91 E-value=3.2e+02 Score=25.00 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---------c---------cchHHHHHHHHHHhcC
Q 038250 274 CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---------Q---------RSLCEKALSVLDGLCS 335 (444)
Q Consensus 274 ~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---------~---------~~~~~~a~~~L~~L~~ 335 (444)
+......++..+..|...++ ......+.+.++.+.+.|..- + ..+...=...|+.|+.
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~e----G~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~ 152 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPE----GIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS 152 (226)
T ss_pred chHHHHHHHHHHHHHHcCcH----HHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC
Confidence 35677778888888888765 566666888888888887632 1 1122333567889999
Q ss_pred ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHH-HHhcCCChHHHHH
Q 038250 336 SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLL-LLQVGCADKTKEH 414 (444)
Q Consensus 336 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~-ll~~~~~~~~k~~ 414 (444)
++.|.+.+ .+.+....+.+++...+. .....-+|.+|=.. - .|-...++. .|.++ +..+|-.
T Consensus 153 ~~~Gl~lL-e~~~if~~l~~i~~~~~~--~~l~klil~~LDY~-~------------~~~~R~iLsKaLt~~-s~~iRl~ 215 (226)
T PF14666_consen 153 TPNGLKLL-ERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYS-V------------DGHPRIILSKALTSG-SESIRLY 215 (226)
T ss_pred ChhHHHHH-HHCCHHHHHHHHHccCch--HHHHHHHHhhCCCC-C------------ccHHHHHHHHHHhcC-CHHHHHH
Confidence 99998877 888999988887765432 22233344444321 1 234444444 77777 8899999
Q ss_pred HHHHHHHHH
Q 038250 415 VSELLKLLN 423 (444)
Q Consensus 415 a~~ll~~l~ 423 (444)
|...|+.+-
T Consensus 216 aT~~L~~ll 224 (226)
T PF14666_consen 216 ATKHLRVLL 224 (226)
T ss_pred HHHHHHHHh
Confidence 999777664
No 462
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=37.80 E-value=3.8e+02 Score=25.79 Aligned_cols=125 Identities=10% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhcccCCcHHHHHHHHhc-----CCHH------------------HHHHHHHHHHHHHhcc------------------
Q 038250 210 LTYLGSASSMRCMVWFLKS-----GDLS------------------RRRNAVLVLREIVSSD------------------ 248 (444)
Q Consensus 210 ~~~i~~~g~i~~Lv~lL~~-----~~~~------------------~~~~A~~~L~~L~s~~------------------ 248 (444)
...+++.|.||.|-.+.++ ..+. .|.+-.+.+.+++..+
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Q ss_pred ---hhhHHHhhcccccHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCCCCCC-chhHHHHhcCcHHHHHHHhhcc---cc
Q 038250 249 ---HRKVNVLLDIEGAIEPLFKLIKEP-ICPTATKASLVVVYRTITSASATE-KPIQKFVDMGLVSLLLEMLVDA---QR 320 (444)
Q Consensus 249 ---~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~-~~~~~i~~~g~v~~Lv~lL~~~---~~ 320 (444)
......- ...|.+..+++.+... .+...+-.-+.++-...++.. . .-+..+.+.|.++.|+..+-++ +.
T Consensus 82 ~~~~~~~~~~-~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t--~~~~Q~fl~~~GLLe~lv~eil~~~~~~~ 158 (303)
T PF12463_consen 82 LNSNKLAECK-EKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGAT--SYADQAFLAERGLLEHLVSEILSDGCMSQ 158 (303)
T ss_pred cccccccccc-ccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCC--cHHHHHHHHhcchHHHHHHHHhcCccchH
Q ss_pred chHHHHHHHHHHhcCCh
Q 038250 321 SLCEKALSVLDGLCSSD 337 (444)
Q Consensus 321 ~~~~~a~~~L~~L~~~~ 337 (444)
.+......+|+.|...+
T Consensus 159 ~v~Q~~FDLLGELiK~n 175 (303)
T PF12463_consen 159 EVLQSNFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHHHHHHCCC
No 463
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=37.35 E-value=2.8e+02 Score=28.54 Aligned_cols=123 Identities=14% Similarity=0.172 Sum_probs=71.4
Q ss_pred hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC-CchhHHHHhcCcHHHHHHHhhc-cccchHHHHH
Q 038250 250 RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT-EKPIQKFVDMGLVSLLLEMLVD-AQRSLCEKAL 327 (444)
Q Consensus 250 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~ 327 (444)
+.-..|-...+++..+++.+..+ .+..--+..+. ...... ......+.+.+.|+.|+.+|.. .+..++.+|.
T Consensus 11 e~l~Fik~~~~~v~~llkHI~~~---~ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa 84 (475)
T PF04499_consen 11 EMLEFIKSQPNFVDNLLKHIDTP---AIMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAA 84 (475)
T ss_pred HHHHHHHhCccHHHHHHHhcCCc---HHHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHH
Confidence 34444434456777777776544 33332222222 222100 1123344568999999999973 4677888888
Q ss_pred HHHHHhcCCh--------------hhHHHHhcCCCChHHHHHHHhh-cChhHHHHHHHHHHHHcccc
Q 038250 328 SVLDGLCSSD--------------YGRGDAYNNSLIFPVIVKKILR-VSDLATEFAVSILWKLCKNE 379 (444)
Q Consensus 328 ~~L~~L~~~~--------------~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~ 379 (444)
.+|..|..-. .--.++ .....|..|++.+.. .....-.+++.++..|-+..
T Consensus 85 ~~L~aII~is~n~~~~~~~~igpn~L~r~L-~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 85 DFLKAIIRISRNAPQNEQSSIGPNPLTRQL-VSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHhhccccccccCCCccHHHHHH-hChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 8887775421 112233 666778888888774 33555567777777776554
No 464
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.19 E-value=1.6e+02 Score=28.53 Aligned_cols=77 Identities=16% Similarity=0.044 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcCCC--ChHHHHHHHhhc---ChhHHHHHHHHHHHHccccccchHHHHHHHH----h
Q 038250 322 LCEKALSVLDGLCSSDYGRGDAYNNSL--IFPVIVKKILRV---SDLATEFAVSILWKLCKNEEREEKTAFAEAL----Q 392 (444)
Q Consensus 322 ~~~~a~~~L~~L~~~~~~~~~i~~~~g--~i~~Lv~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~----~ 392 (444)
++-.|+..|..+....+....+ ...+ .+..|++++.-. ...++..|+.+|..|+.+.+. ...+..++ .
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~-l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~--~~~V~~aLg~~v~ 314 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKL-LEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPR--CSDVLRALGANVS 314 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHH-HhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcccc--HHHHHHHhcCCCC
Confidence 3555667776666666777777 4444 999999988653 567889999999999987553 22233333 4
Q ss_pred hChHHHHHH
Q 038250 393 VGAFQKLLL 401 (444)
Q Consensus 393 ~g~l~~Ll~ 401 (444)
.|++..+++
T Consensus 315 HGiL~~llR 323 (329)
T PF06012_consen 315 HGILPQLLR 323 (329)
T ss_pred cccHHHHHH
Confidence 677776665
No 465
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=36.98 E-value=6.9 Score=37.13 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=16.2
Q ss_pred CCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 53 STGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 53 ~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
.-|.+||..|-.... ..+.+.|+.|+..|..
T Consensus 327 ~~~~~~Cf~C~~~~~-~~~~y~C~~Ck~~FCl 357 (378)
T KOG2807|consen 327 YNGSRFCFACQGELL-SSGRYRCESCKNVFCL 357 (378)
T ss_pred cCCCcceeeeccccC-CCCcEEchhccceeec
Confidence 345556666633333 3344566666655543
No 466
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=36.85 E-value=2.2e+02 Score=22.83 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=33.1
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc
Q 038250 261 AIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDM 305 (444)
Q Consensus 261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~ 305 (444)
+|+.||+-|.++ ++++...|..+|...|..+. ....++..
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~----~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKE----YLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchh----hHHHHHHc
Confidence 688999999888 78999999999999998875 55555553
No 467
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=36.28 E-value=1.5e+02 Score=24.86 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=52.3
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHH-HHHHhhc---cccchHHHHHHHHHHhcC
Q 038250 261 AIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSL-LLEMLVD---AQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~-Lv~lL~~---~~~~~~~~a~~~L~~L~~ 335 (444)
++..|-+=|.++.++.++..|+.+|-.+..+.. ......+...+.+.. |++++.. .+..++...+.++...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG--~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCG--HRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 445555555543367788888888888887764 346677778889987 9999963 245788888888887764
No 468
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=35.83 E-value=2.6e+02 Score=30.29 Aligned_cols=121 Identities=10% Similarity=0.042 Sum_probs=69.8
Q ss_pred chhhHHHhhcccccHHHHHHHhcCC-------CChHHHHHHHHHHHHHhc--CCCCCCchhHHHHhcCcHHHHHHHhhcc
Q 038250 248 DHRKVNVLLDIEGAIEPLFKLIKEP-------ICPTATKASLVVVYRTIT--SASATEKPIQKFVDMGLVSLLLEMLVDA 318 (444)
Q Consensus 248 ~~~~~~~i~~~~g~i~~Lv~ll~~~-------~~~~~~~~a~~aL~~L~~--~~~~~~~~~~~i~~~g~v~~Lv~lL~~~ 318 (444)
...-+..+ .|+++.++..|... .++...+-|++.+.++.. ... .-..-+.+.=.++.++..+++.
T Consensus 399 sKrke~Tf---qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~---sp~an~me~fiv~hv~P~f~s~ 472 (970)
T COG5656 399 SKRKEETF---QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKM---SPAANVMEYFIVNHVIPAFRSN 472 (970)
T ss_pred cccchhhh---hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccC---chHHHHHHHHHHHHhhHhhcCc
Confidence 33344445 59999999999421 235566667777777655 221 1233344555666777777777
Q ss_pred ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 319 QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 319 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
..-++.+|+..+..+..+-...... ..+.+...+.|++..-.++-.|+-||.-+-.
T Consensus 473 ygfL~Srace~is~~eeDfkd~~il---l~aye~t~ncl~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 473 YGFLKSRACEFISTIEEDFKDNGIL---LEAYENTHNCLKNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred ccchHHHHHHHHHHHHHhcccchHH---HHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence 8888999999999884321111111 1234444555555444555555555555544
No 469
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=35.67 E-value=4.4e+02 Score=26.06 Aligned_cols=137 Identities=19% Similarity=0.161 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHHHhcchhhHHHhhcccc--cHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCCCCCCchhHHHHhcC
Q 038250 230 DLSRRRNAVLVLREIVSSDHRKVNVLLDIEG--AIEPLFKLIKEPICP-TATKASLVVVYRTITSASATEKPIQKFVDMG 306 (444)
Q Consensus 230 ~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g--~i~~Lv~ll~~~~~~-~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g 306 (444)
+..+..+|..+|..+ -.+++....+..+.+ ++...+..+.++..+ .+....++ -|+..+ ....++...
T Consensus 59 ~~~L~~qALkll~~~-l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~---~ls~Q~-----f~~~~~~~~ 129 (372)
T PF12231_consen 59 DSRLVIQALKLLGFF-LYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLW---CLSDQK-----FSPKIMTSD 129 (372)
T ss_pred chHHHHHHHHHHHHH-HccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCC-----CCCcccchh
Confidence 456778899999999 466777777733222 345555666555322 33444444 343332 334455666
Q ss_pred cHHHHHHHhhc-----cccchHHHHHHHHHHhcCChhhHHHHhcCCC-ChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 307 LVSLLLEMLVD-----AQRSLCEKALSVLDGLCSSDYGRGDAYNNSL-IFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 307 ~v~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
.+..++..+.. ++..+....+.++.+|.... ...+..+.. -++.++..+.+....++..|...+..+..
T Consensus 130 ~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~--p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 130 RVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQF--PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK 204 (372)
T ss_pred hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 67777776652 35677888888998887533 223323333 56677777777666677666666655543
No 470
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=35.52 E-value=27 Score=33.04 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=12.8
Q ss_pred CcchhcHHHHHHHH
Q 038250 54 TGITYDRENIEKWI 67 (444)
Q Consensus 54 cg~~~c~~ci~~~~ 67 (444)
||..|||.|.+.|-
T Consensus 342 Cgf~FCR~C~e~yh 355 (446)
T KOG0006|consen 342 CGFAFCRECKEAYH 355 (446)
T ss_pred chhHhHHHHHhhhc
Confidence 99999999999776
No 471
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=35.43 E-value=18 Score=33.98 Aligned_cols=23 Identities=13% Similarity=0.495 Sum_probs=15.7
Q ss_pred cccccccccCc-Cc--eecCCcchhc
Q 038250 37 FRCPISLDLMK-DP--VTLSTGITYD 59 (444)
Q Consensus 37 ~~Cpic~~~~~-~P--v~~~cg~~~c 59 (444)
|.||+|+..|. ++ ...+.||+|.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 79999999985 12 2234577775
No 472
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=35.37 E-value=23 Score=33.07 Aligned_cols=51 Identities=18% Similarity=0.425 Sum_probs=34.3
Q ss_pred CCccccccccccCcC-c--------eecCCcchhcHHHHHH-HHHhcC---------CCCCCCCCcccCCC
Q 038250 34 PNHFRCPISLDLMKD-P--------VTLSTGITYDRENIEK-WIHEDG---------NITCPVTNRVLTSF 85 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~-P--------v~~~cg~~~c~~ci~~-~~~~~~---------~~~CP~c~~~~~~~ 85 (444)
+..|.|+.|..+|.. | -+++|...+|-..+.+ |+ -+| .|.||.|++-|.++
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWL-LQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWL-LQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHH-hhcccccccCCCCccCCcccchhcch
Confidence 556899999988763 2 2346666666666654 55 232 47899999988764
No 473
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.31 E-value=6.2e+02 Score=27.51 Aligned_cols=180 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcch--------hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 220 RCMVWFLKSGDLSRRRNAVLVLREIVSSDH--------RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~--------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
|.|..-|+..|..+|.+|+..+.++ .| +....+ .+ .-...|..+|+++ .|.++..|..-+..+.+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~---fP~~dpd~~~e~mD~i-~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s- 249 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEA---FPIRDPDLHAEEMDSI-IQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITS- 249 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHh---ccCCCCCccHHHHHHH-HH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHH-
Q ss_pred CCCCCchhHHHHhcCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 292 ASATEKPIQKFVDMGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 292 ~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
--..++=...+.-|+.-+.+. ..+++-....-|-.+...+.....+ .-++|.+-..|...+..++-
T Consensus 250 ------~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l---e~~Lpal~~~l~D~se~VRv 320 (1005)
T KOG1949|consen 250 ------KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL---EQLLPALRYSLHDNSEKVRV 320 (1005)
T ss_pred ------HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH---HHHHHhcchhhhccchhHHH
Q ss_pred HHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 367 FAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 367 ~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
.++..|..|-.. .....-.-=-...++..|..+..+..|..+.-+...+
T Consensus 321 A~vd~ll~ik~v-------ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 321 AFVDMLLKIKAV-------RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHHHHHHHHhh-------hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
No 474
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=35.19 E-value=2e+02 Score=21.75 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=47.3
Q ss_pred cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh----ccccchHHHHHHHHH
Q 038250 259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV----DAQRSLCEKALSVLD 331 (444)
Q Consensus 259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~ 331 (444)
..++.|+..++.+..+.++++-.+.++.++.... ..-+..| =+.++.+|. ++++.++..|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~-------~~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSR-------GENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh-------HHHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4678899999876657899999999999998753 3334544 666666665 447778888877664
No 475
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=34.69 E-value=2.6e+02 Score=22.91 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCccc-chhHhhcCchHHHHHHHHhhccc-----ccccchHHHHHHHH
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRN-KRCIVDNGAVSVLAEAFETFSKT-----CLDENVSVLEEILS 197 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~-----~~~~~~~~~~~a~~ 197 (444)
..+++..|...+...++.++.++|..|..++...+.. +..+.+.- ..|+-+..++.. +.+....|+..|-.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~---~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS---AQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH---HHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 4455555555444447888899999999999876643 44444431 233334444221 01334567777766
Q ss_pred HHH
Q 038250 198 TLT 200 (444)
Q Consensus 198 ~L~ 200 (444)
++.
T Consensus 113 l~~ 115 (122)
T cd03572 113 LIK 115 (122)
T ss_pred HHH
Confidence 666
No 476
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=34.66 E-value=7.2 Score=38.38 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=24.3
Q ss_pred CccccccccccCcCceec---CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 35 NHFRCPISLDLMKDPVTL---STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.+|+|.+|...|.||..+ .|... ..-.+.||.|.+.|+
T Consensus 266 GdyiCqLCK~kYeD~F~LAQHrC~RI-----------V~vEYrCPEC~KVFs 306 (500)
T KOG3993|consen 266 GDYICQLCKEKYEDAFALAQHRCPRI-----------VHVEYRCPECDKVFS 306 (500)
T ss_pred HHHHHHHHHHhhhhHHHHhhccCCee-----------EEeeecCCccccccc
Confidence 346777777777777655 23221 123467999998885
No 477
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.60 E-value=31 Score=33.52 Aligned_cols=62 Identities=6% Similarity=0.086 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCChhhhhhcccCCcHHHHHHH--HhcCCHHHHHHHHHHHHHHHhcchhhHHHhh
Q 038250 195 ILSTLTLLFPLAGEGLTYLGSASSMRCMVWF--LKSGDLSRRRNAVLVLREIVSSDHRKVNVLL 256 (444)
Q Consensus 195 a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~l--L~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~ 256 (444)
..+.+..++..++++...+.+-||++.+++- .+..+|-+++...-++++|...+.+|.+.|+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 5567777777888999999999999998873 3345799999999999999888888888884
No 478
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=34.22 E-value=20 Score=38.26 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
..||-|+.. .+-|..||..|=.. -....||.|+..+...
T Consensus 2 ~~Cp~Cg~~------n~~~akFC~~CG~~----l~~~~Cp~CG~~~~~~ 40 (645)
T PRK14559 2 LICPQCQFE------NPNNNRFCQKCGTS----LTHKPCPQCGTEVPVD 40 (645)
T ss_pred CcCCCCCCc------CCCCCccccccCCC----CCCCcCCCCCCCCCcc
No 479
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=34.00 E-value=37 Score=36.34 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=46.6
Q ss_pred CCCccccccccccCcCceec-CCcchhcHHHHHHHHH---hcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHH
Q 038250 33 TPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIH---EDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCV 102 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~---~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~ 102 (444)
..--|.|||+...|.-|.-- .|.|-=|-.... |+. .+..+.||+|.+...-..+..+..+..++.....
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 34458999999999988654 677754433322 232 1245789999988777777777777777655443
No 480
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=32.58 E-value=30 Score=29.73 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=12.4
Q ss_pred CCCCCCCCCcccCCCC
Q 038250 71 GNITCPVTNRVLTSFE 86 (444)
Q Consensus 71 ~~~~CP~c~~~~~~~~ 86 (444)
..|.||.|+.++...+
T Consensus 127 ~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 127 LNFTCPRCGAMLDYLD 142 (158)
T ss_pred cCCcCCCCCCEeeecc
Confidence 4689999999886543
No 481
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=32.38 E-value=15 Score=19.54 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=4.6
Q ss_pred ccccccccCcC
Q 038250 38 RCPISLDLMKD 48 (444)
Q Consensus 38 ~Cpic~~~~~~ 48 (444)
.|++|...+..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 45555555444
No 482
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.55 E-value=7.3e+02 Score=27.22 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=48.9
Q ss_pred cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 038250 167 NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVS 246 (444)
Q Consensus 167 ~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s 246 (444)
..+...+..+++++--+ ....+..+|..++. .+. ..+-..+. .++..|--++++....+|-.|.++|-.++.
T Consensus 240 ~~~~s~~~~fl~s~l~~---K~emV~~EaArai~-~l~--~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRH---KSEMVIYEAARAIV-SLP--NTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred ccchhhHHHHHHHHHhc---hhHHHHHHHHHHHh-hcc--ccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34556667777654111 13456667777666 232 22222332 278888888889999999999999999976
Q ss_pred cchh
Q 038250 247 SDHR 250 (444)
Q Consensus 247 ~~~~ 250 (444)
..+.
T Consensus 312 ~~P~ 315 (865)
T KOG1078|consen 312 KHPQ 315 (865)
T ss_pred hCCc
Confidence 6664
No 483
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.52 E-value=1.5e+02 Score=32.77 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhc-C---chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDN-G---AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG 214 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G---~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~ 214 (444)
|++.+..|+..|.+..--.|.+|...+.. | +-+. ..|. .++ .....++.++-++ ..+.
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r--~~l~---~~~---ks~~le~~l~~mw----------~~Vr 736 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR--IFLG---AGT---KSAKLEQVLRQMW----------EAVR 736 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc--cccc---CCC---chHHHHHHHHHHH----------HHHh
Confidence 78899999999999887767777654432 1 0000 0110 010 1223333333333 4555
Q ss_pred cCCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHHhcchhhHHHhh
Q 038250 215 SASSMRCMVWFLKSGD-----LSRRRNAVLVLREIVSSDHRKVNVLL 256 (444)
Q Consensus 215 ~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~~L~s~~~~~~~~i~ 256 (444)
..++|..|+.+|+-.+ ..++..|+.+|..| +.++..++.+.
T Consensus 737 ~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GL-aR~~tVrQIlt 782 (1516)
T KOG1832|consen 737 GNDGIKILLKLLQYKNPPTTADCIRALACRVLLGL-ARDDTVRQILT 782 (1516)
T ss_pred cCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcc-ccCcHHHHHHH
Confidence 6789999999998543 57889999999999 68888898884
No 484
>PF12773 DZR: Double zinc ribbon
Probab=31.29 E-value=33 Score=22.74 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=7.5
Q ss_pred CCCCCCCCcccC
Q 038250 72 NITCPVTNRVLT 83 (444)
Q Consensus 72 ~~~CP~c~~~~~ 83 (444)
...||.|+..+.
T Consensus 29 ~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 29 KKICPNCGAENP 40 (50)
T ss_pred CCCCcCCcCCCc
Confidence 456777776544
No 485
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=30.85 E-value=2.9e+02 Score=22.34 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH---hhcChhHHHHHHHHHHHHccccccchHHHHHHHH-hhChH
Q 038250 321 SLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI---LRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAF 396 (444)
Q Consensus 321 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l 396 (444)
......+.-|+.++.+......+ +..|.+-| ...+-...-.|+.+|..|..+ |+++.+..+. ....|
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~I------~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n---G~~~~~~~~~~~~~~I 88 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQEI------MDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN---GSERFVDELRDHIDII 88 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHHH------HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH---S-HHHHHHHHHTHHHH
T ss_pred CcCHHHHHHHHHHHhccccHHHH------HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHH
Confidence 34455666777777665555555 45677777 334566778999999999998 6677888775 45666
Q ss_pred HHHHHHHh--cCCC---hHHHHHHHHHHHHHH
Q 038250 397 QKLLLLLQ--VGCA---DKTKEHVSELLKLLN 423 (444)
Q Consensus 397 ~~Ll~ll~--~~~~---~~~k~~a~~ll~~l~ 423 (444)
..|..+-- .... ..+|++|..++.++.
T Consensus 89 ~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 89 RELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred hhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 66655422 1112 349999999999886
No 486
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=30.77 E-value=59 Score=22.58 Aligned_cols=28 Identities=11% Similarity=0.244 Sum_probs=18.0
Q ss_pred CCCCCCCCCcccCCCCCCccHHHHHHHH
Q 038250 71 GNITCPVTNRVLTSFEPIPNHTIRRMIQ 98 (444)
Q Consensus 71 ~~~~CP~c~~~~~~~~l~~n~~l~~~i~ 98 (444)
.+..||+|++.+..++..-...-+++.+
T Consensus 7 PH~HC~VCg~aIp~de~~CSe~C~eil~ 34 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQVCSEECGEILN 34 (64)
T ss_pred CCccccccCCcCCCccchHHHHHHHHHH
Confidence 3567999999888776544444444443
No 487
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.70 E-value=97 Score=29.57 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=42.7
Q ss_pred ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC-----------CCchhHHHHhcCcHHHHHHHhh
Q 038250 260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASA-----------TEKPIQKFVDMGLVSLLLEMLV 316 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~-----------~~~~~~~i~~~g~v~~Lv~lL~ 316 (444)
..|..++.-|... +...+-.|+.+|..++.+.-. ..+|...+.+.|++++|+.+|.
T Consensus 60 ~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4566777777776 677778888888888776421 1257888899999999999997
No 488
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=30.60 E-value=34 Score=29.59 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=7.6
Q ss_pred CCCCCCCCCcc
Q 038250 71 GNITCPVTNRV 81 (444)
Q Consensus 71 ~~~~CP~c~~~ 81 (444)
....||.|+.+
T Consensus 148 ~P~~CPiCga~ 158 (166)
T COG1592 148 APEVCPICGAP 158 (166)
T ss_pred CCCcCCCCCCh
Confidence 34578988764
No 489
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=30.49 E-value=37 Score=32.40 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=26.7
Q ss_pred cccccccc-CcCce-ec-CCcchhcHHHHHHHHHhcCCCCCCCCC
Q 038250 38 RCPISLDL-MKDPV-TL-STGITYDRENIEKWIHEDGNITCPVTN 79 (444)
Q Consensus 38 ~Cpic~~~-~~~Pv-~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~ 79 (444)
.|-.|+.- ...+. .. .|.++||.+| ..++ .+.-..||.|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldC-Dv~i-HesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDC-DVFI-HESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccc-hHHH-HhhhhcCCCcC
Confidence 58888444 33333 33 6999999999 3445 34556899996
No 490
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.25 E-value=93 Score=29.71 Aligned_cols=54 Identities=26% Similarity=0.256 Sum_probs=37.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch--------------hhHHHhhcccccHHHHHHHhcC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH--------------RKVNVLLDIEGAIEPLFKLIKE 271 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~--------------~~~~~i~~~~g~i~~Lv~ll~~ 271 (444)
..+..++.-|.+++...+..|+.+|.+++-+.- .|...+ ...|++++|+.+|+.
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL-~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLL-YECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHH
Confidence 446667777777777777778888888743321 455566 457999999998873
No 491
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.21 E-value=1.5e+02 Score=30.38 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=52.6
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC-CChHHHHHHHHHHHHHHh
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG-CADKTKEHVSELLKLLNP 424 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~-~~~~~k~~a~~ll~~l~~ 424 (444)
+..|.+.+.+.+..++..|+.+|-.+..+-+ ...-.++.+.+++..+|...... .+..+|+++..++..=..
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG---~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCG---YSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 4445555555677889999998888887643 33444677999999999999888 678899997776654443
No 492
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=30.14 E-value=3.4e+02 Score=32.25 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh
Q 038250 225 FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD 304 (444)
Q Consensus 225 lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~ 304 (444)
+|++.++.+++-++.....+=...+.+. . ..+|..||..+-++ +...+..|+.+|..|+..+ ...+..
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~~----q-qeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~------~~~l~~ 510 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSYC----Q-QEVVGALVTHIGSG-NSQEVDAALDVLCELAEKN------PSELQP 510 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HHH----H-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccchh----H-HHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcc------HHHHHH
Confidence 3456677777777777666633333321 1 23567788887666 5666789999999999753 334433
Q ss_pred -cCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 305 -MGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 305 -~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+-.|..+++.+..-+..-......+|..|+.
T Consensus 511 fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 511 FATFLKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp THHHHHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4456666666665556666778888888885
No 493
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=29.90 E-value=54 Score=18.64 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHcc
Q 038250 365 TEFAVSILWKLCK 377 (444)
Q Consensus 365 ~~~a~~~L~~L~~ 377 (444)
+..|+.+|..+..
T Consensus 2 R~~Aa~aLg~igd 14 (27)
T PF03130_consen 2 RRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHGGG-S
T ss_pred HHHHHHHHHHcCC
Confidence 4566777766655
No 494
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.82 E-value=43 Score=32.66 Aligned_cols=47 Identities=34% Similarity=0.572 Sum_probs=35.1
Q ss_pred ccccccccccCcC---ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 36 HFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.+.|.|.++.|.+ |+.++-|++|-...+++|- ......||..++.+.
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~-~~~~i~dP~~~k~f~ 379 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLN-EDDGIGDPRTKKVFR 379 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhc-ccCCCcCCCCCcccc
Confidence 3677777777763 7778999999999999877 333378888877664
No 495
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.75 E-value=34 Score=36.44 Aligned_cols=39 Identities=21% Similarity=0.580 Sum_probs=28.0
Q ss_pred cccccccccCcCceec--CCcchhcHHHHHHHHHhcCCCCCCC
Q 038250 37 FRCPISLDLMKDPVTL--STGITYDRENIEKWIHEDGNITCPV 77 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~ 77 (444)
|.|.+|.--.+---.+ .|||.....|...|| +.|. .||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf-~~gd-~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWF-RTGD-VCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHH-hcCC-cCCC
Confidence 5677776555543333 699999999999999 4444 7887
No 496
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.75 E-value=31 Score=26.21 Aligned_cols=13 Identities=23% Similarity=0.670 Sum_probs=11.3
Q ss_pred hhcHHHHHHHHHh
Q 038250 57 TYDRENIEKWIHE 69 (444)
Q Consensus 57 ~~c~~ci~~~~~~ 69 (444)
.|||.|+..|..+
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999953
No 497
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.45 E-value=39 Score=30.92 Aligned_cols=39 Identities=10% Similarity=-0.069 Sum_probs=26.1
Q ss_pred ccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 38 RCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.|.+|.+.+..+ ....|..|...+- .-...||.|+.+..
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~--~~~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALR--TLKTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCC--cccCcCccCCCcCC
Confidence 699999876422 2347888977753 12357999987653
No 498
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=29.26 E-value=6.9e+02 Score=29.82 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=48.3
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
.++..||.++-+++......|..+|..|+..+++ .+..-...|..+++.+.+= +..-.+.....|..|+....
T Consensus 473 eVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~---~l~~fa~~l~giLD~l~~L-s~~qiR~lf~il~~La~~~~ 545 (1426)
T PF14631_consen 473 EVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS---ELQPFATFLKGILDYLDNL-SLQQIRKLFDILCTLAFSDS 545 (1426)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH---HHHHTHHHHHGGGGGGGG---HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCc
Confidence 4688888988888877778999999999754443 3322245566666666654 56677778888888886643
No 499
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=29.07 E-value=44 Score=37.78 Aligned_cols=41 Identities=24% Similarity=0.467 Sum_probs=27.2
Q ss_pred CCCCccccccccc--cCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 32 TTPNHFRCPISLD--LMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 32 ~~~~~~~Cpic~~--~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
+++.++.||-|+. ++.|+ +-|..| +-..+.||.|+.++..+
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~---svgsGf----------DLpdK~CPkCg~pl~kD 952 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG---SVGSGF----------DLPDKDCPKCGTPLKKD 952 (1444)
T ss_pred CCCccccCCCCceeeeecCC---CcCCCC----------CCCCCCCCcCCCccccC
Confidence 5678899998864 34444 233333 23567899999998643
No 500
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=28.72 E-value=54 Score=31.14 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCCCCccccccccccCc--------------C---ce--ecCCcchhcHHHHHHHHHhc----C----CCCCCCCCcccC
Q 038250 31 LTTPNHFRCPISLDLMK--------------D---PV--TLSTGITYDRENIEKWIHED----G----NITCPVTNRVLT 83 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~--------------~---Pv--~~~cg~~~c~~ci~~~~~~~----~----~~~CP~c~~~~~ 83 (444)
..-+.+-.||+|+.+-. | |. ..+|||. |..=..+||.+- | +..||.|...+.
T Consensus 336 ~~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 336 NTGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 34455679999986522 1 21 2389995 666666777321 1 346999987664
Q ss_pred C
Q 038250 84 S 84 (444)
Q Consensus 84 ~ 84 (444)
.
T Consensus 415 g 415 (429)
T KOG3842|consen 415 G 415 (429)
T ss_pred c
Confidence 3
Done!