Query 038250
Match_columns 444
No_of_seqs 318 out of 2766
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 15:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.2E-33 4.2E-38 275.8 23.8 275 140-426 46-336 (354)
2 3nmz_A APC variant protein; pr 100.0 3.4E-32 1.2E-36 273.3 23.8 271 145-426 167-452 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 2.4E-31 8.2E-36 269.9 25.6 288 123-429 3-365 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 5.1E-31 1.8E-35 270.5 24.7 293 120-432 46-392 (584)
5 3ul1_B Importin subunit alpha- 100.0 2.7E-30 9.2E-35 265.9 27.0 285 122-425 57-388 (510)
6 3nmz_A APC variant protein; pr 100.0 1.6E-30 5.6E-35 261.1 24.0 295 122-423 70-407 (458)
7 3now_A UNC-45 protein, SD10334 100.0 2.8E-29 9.5E-34 265.8 28.7 282 122-424 421-737 (810)
8 3tpo_A Importin subunit alpha- 100.0 4.7E-29 1.6E-33 257.9 29.3 284 123-425 77-407 (529)
9 1xm9_A Plakophilin 1; armadill 100.0 2E-29 7E-34 255.7 22.2 287 122-428 44-453 (457)
10 3l6x_A Catenin delta-1; cateni 100.0 1.8E-29 6.1E-34 259.1 20.3 287 122-426 90-478 (584)
11 3nmw_A APC variant protein; AR 100.0 1.9E-29 6.3E-34 246.2 18.0 247 122-380 73-337 (354)
12 3ul1_B Importin subunit alpha- 100.0 1.2E-28 4.3E-33 253.5 24.4 286 121-425 99-431 (510)
13 3now_A UNC-45 protein, SD10334 100.0 1.4E-28 4.6E-33 260.6 25.3 285 117-424 368-694 (810)
14 3tpo_A Importin subunit alpha- 100.0 6E-28 2E-32 249.6 24.9 288 122-425 162-450 (529)
15 4b8j_A Importin subunit alpha- 100.0 3.1E-27 1E-31 244.1 29.4 285 121-424 73-358 (528)
16 4hxt_A De novo protein OR329; 100.0 5.1E-27 1.8E-31 217.9 24.1 243 168-427 2-244 (252)
17 4db8_A Armadillo-repeat protei 100.0 3.5E-27 1.2E-31 219.7 19.1 239 168-424 12-251 (252)
18 4hxt_A De novo protein OR329; 99.9 9.4E-27 3.2E-31 216.1 21.5 243 123-381 3-245 (252)
19 4db8_A Armadillo-repeat protei 99.9 3.1E-27 1.1E-31 220.1 18.0 239 122-377 12-251 (252)
20 4b8j_A Importin subunit alpha- 99.9 3.3E-26 1.1E-30 236.4 26.8 283 122-425 117-401 (528)
21 1wa5_B Importin alpha subunit; 99.9 1.8E-25 6.2E-30 231.0 29.5 282 123-424 88-370 (530)
22 1wa5_B Importin alpha subunit; 99.9 1.8E-25 6E-30 231.1 26.8 283 123-425 131-413 (530)
23 2jdq_A Importin alpha-1 subuni 99.9 5E-25 1.7E-29 222.2 28.0 283 122-425 64-348 (450)
24 2jdq_A Importin alpha-1 subuni 99.9 2E-24 7E-29 217.7 28.8 283 123-426 108-392 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 1.5E-24 5E-29 223.4 26.3 287 121-425 58-386 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 2.4E-24 8.2E-29 227.8 26.4 288 121-426 55-384 (644)
27 3tt9_A Plakophilin-2; cell adh 99.9 2.2E-25 7.5E-30 203.4 14.0 199 169-378 9-230 (233)
28 1jdh_A Beta-catenin; beta-cate 99.9 8.7E-24 3E-28 217.7 25.1 283 120-424 15-339 (529)
29 3tt9_A Plakophilin-2; cell adh 99.9 7.2E-25 2.5E-29 200.0 14.9 197 123-336 9-230 (233)
30 4db6_A Armadillo repeat protei 99.9 6.6E-24 2.3E-28 192.0 20.6 200 215-424 10-209 (210)
31 2z6h_A Catenin beta-1, beta-ca 99.9 1.3E-23 4.4E-28 222.2 25.3 283 120-424 12-336 (644)
32 4db6_A Armadillo repeat protei 99.9 1.1E-23 3.7E-28 190.6 18.2 199 166-377 10-209 (210)
33 2z6g_A B-catenin; FULL-length, 99.9 1.3E-22 4.5E-27 218.5 28.3 287 122-425 192-519 (780)
34 2z6g_A B-catenin; FULL-length, 99.9 3.9E-22 1.3E-26 214.8 25.0 275 130-426 364-665 (780)
35 1xqr_A HSPBP1 protein; armadil 99.9 3.1E-22 1.1E-26 190.2 19.7 224 189-422 54-285 (296)
36 3opb_A SWI5-dependent HO expre 99.9 1.2E-21 4.1E-26 204.0 22.7 251 160-425 449-729 (778)
37 1xqr_A HSPBP1 protein; armadil 99.9 2E-21 6.7E-26 184.7 21.2 185 139-336 53-239 (296)
38 3opb_A SWI5-dependent HO expre 99.9 3.1E-20 1.1E-24 193.4 22.1 281 123-423 331-682 (778)
39 2kr4_A Ubiquitin conjugation f 99.8 1.2E-19 4.2E-24 138.8 6.3 77 27-105 5-81 (85)
40 2kre_A Ubiquitin conjugation f 99.8 4.4E-19 1.5E-23 139.7 7.5 76 28-105 21-96 (100)
41 1wgm_A Ubiquitin conjugation f 99.8 5.6E-19 1.9E-23 138.6 7.7 78 27-106 13-91 (98)
42 1t1h_A Gspef-atpub14, armadill 99.7 3.4E-18 1.2E-22 129.1 5.9 74 31-105 3-76 (78)
43 3grl_A General vesicular trans 99.7 1.5E-15 5.1E-20 154.5 25.7 289 117-422 16-340 (651)
44 2f42_A STIP1 homology and U-bo 99.7 1.7E-17 5.7E-22 143.4 6.6 75 30-105 100-174 (179)
45 2yu4_A E3 SUMO-protein ligase 99.6 1.2E-16 4.3E-21 124.6 6.2 75 32-106 3-85 (94)
46 3ztg_A E3 ubiquitin-protein li 99.6 2.6E-16 8.9E-21 122.7 8.0 77 29-105 6-84 (92)
47 2c2l_A CHIP, carboxy terminus 99.6 2.7E-16 9.1E-21 148.8 5.8 76 29-105 201-276 (281)
48 3grl_A General vesicular trans 99.6 3.7E-13 1.3E-17 137.0 22.7 284 122-423 60-393 (651)
49 3fl2_A E3 ubiquitin-protein li 99.5 6.8E-15 2.3E-19 121.2 5.1 71 32-103 48-119 (124)
50 2y43_A E3 ubiquitin-protein li 99.5 8.5E-15 2.9E-19 115.6 3.1 72 32-105 18-90 (99)
51 3htk_C E3 SUMO-protein ligase 99.5 1.7E-14 5.7E-19 130.4 5.2 72 33-104 178-252 (267)
52 1z6u_A NP95-like ring finger p 99.5 2E-14 6.8E-19 122.0 5.1 69 33-102 75-144 (150)
53 2yur_A Retinoblastoma-binding 99.4 1.1E-13 3.6E-18 102.9 5.9 64 27-90 6-71 (74)
54 3lrq_A E3 ubiquitin-protein li 99.4 2.9E-14 9.9E-19 112.6 2.9 74 30-104 16-90 (100)
55 2ckl_A Polycomb group ring fin 99.4 1.1E-13 3.6E-18 111.1 4.5 69 32-102 11-84 (108)
56 2ecy_A TNF receptor-associated 99.4 2.7E-13 9.4E-18 98.3 5.8 57 30-87 9-65 (66)
57 2egp_A Tripartite motif-contai 99.4 1E-14 3.5E-19 110.1 -2.1 66 30-95 6-76 (79)
58 2csy_A Zinc finger protein 183 99.4 3.6E-13 1.2E-17 102.0 6.3 63 30-95 9-71 (81)
59 3hct_A TNF receptor-associated 99.4 1.8E-13 6E-18 111.6 4.8 75 29-104 11-85 (118)
60 2ecw_A Tripartite motif-contai 99.4 5.5E-14 1.9E-18 107.6 1.6 66 30-95 13-82 (85)
61 2djb_A Polycomb group ring fin 99.4 3.3E-13 1.1E-17 99.7 5.8 60 29-90 8-68 (72)
62 3l11_A E3 ubiquitin-protein li 99.4 1.3E-13 4.3E-18 112.0 2.2 70 31-101 10-86 (115)
63 2ecv_A Tripartite motif-contai 99.4 8.6E-14 3E-18 106.5 1.0 66 30-95 13-82 (85)
64 1jm7_B BARD1, BRCA1-associated 99.4 1.1E-13 3.7E-18 112.7 1.4 70 32-105 18-88 (117)
65 3ltm_A Alpha-REP4; protein eng 99.3 7.1E-11 2.4E-15 106.1 19.2 189 167-427 18-206 (211)
66 2bay_A PRE-mRNA splicing facto 99.3 2E-13 6.8E-18 96.7 1.8 54 36-91 3-57 (61)
67 2ckl_B Ubiquitin ligase protei 99.3 4.2E-13 1.4E-17 116.3 3.8 71 32-103 50-122 (165)
68 1oyz_A Hypothetical protein YI 99.3 1.9E-10 6.3E-15 108.2 21.4 223 124-422 25-248 (280)
69 4ayc_A E3 ubiquitin-protein li 99.3 7.1E-13 2.4E-17 111.2 4.0 63 34-100 51-113 (138)
70 2ysl_A Tripartite motif-contai 99.3 1.7E-12 5.8E-17 96.2 5.6 58 30-87 14-72 (73)
71 1jm7_A BRCA1, breast cancer ty 99.3 6.2E-13 2.1E-17 107.4 3.3 70 33-102 18-88 (112)
72 2ysj_A Tripartite motif-contai 99.3 3.3E-12 1.1E-16 91.7 5.5 49 30-78 14-63 (63)
73 3ltj_A Alpharep-4; protein eng 99.3 4.4E-10 1.5E-14 100.1 20.3 189 118-377 10-198 (201)
74 3ltj_A Alpharep-4; protein eng 99.3 2.7E-10 9.1E-15 101.5 18.8 185 167-423 13-197 (201)
75 1g25_A CDK-activating kinase a 99.3 2.3E-12 7.8E-17 93.1 4.2 55 35-90 2-61 (65)
76 3ltm_A Alpha-REP4; protein eng 99.3 2.6E-10 8.9E-15 102.4 18.7 189 120-379 17-205 (211)
77 3hcs_A TNF receptor-associated 99.3 2.7E-12 9.2E-17 111.7 4.3 75 29-104 11-85 (170)
78 1rmd_A RAG1; V(D)J recombinati 99.2 1.7E-12 5.8E-17 105.5 2.7 71 31-102 18-89 (116)
79 3knv_A TNF receptor-associated 99.2 6.4E-13 2.2E-17 111.4 0.1 73 31-104 26-107 (141)
80 2d8t_A Dactylidin, ring finger 99.2 5.7E-12 1.9E-16 92.7 4.2 52 31-84 10-61 (71)
81 1oyz_A Hypothetical protein YI 99.2 1E-09 3.4E-14 103.1 20.6 223 121-419 53-277 (280)
82 2ecj_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 87.1 5.2 49 30-78 9-58 (58)
83 3ng2_A RNF4, snurf, ring finge 99.2 3.7E-12 1.3E-16 93.8 2.3 57 32-90 6-69 (71)
84 2ct2_A Tripartite motif protei 99.2 2.1E-11 7.2E-16 93.7 6.3 57 29-85 8-69 (88)
85 2ea6_A Ring finger protein 4; 99.2 1.5E-11 5.2E-16 89.8 3.6 53 30-84 9-68 (69)
86 1e4u_A Transcriptional repress 99.1 5.1E-11 1.8E-15 88.8 5.4 55 31-86 6-64 (78)
87 2ect_A Ring finger protein 126 99.1 4.2E-11 1.4E-15 89.8 4.7 59 30-90 9-70 (78)
88 2xeu_A Ring finger protein 4; 99.1 1.5E-11 5.1E-16 88.4 1.4 53 35-89 2-61 (64)
89 4gmo_A Putative uncharacterize 99.1 1.8E-09 6E-14 114.4 17.3 193 218-422 35-256 (684)
90 4fdd_A Transportin-1; heat rep 99.1 2.4E-09 8.2E-14 116.5 17.9 272 124-425 130-430 (852)
91 2kiz_A E3 ubiquitin-protein li 99.0 2.4E-10 8.1E-15 83.4 5.7 54 30-85 8-64 (69)
92 3m62_A Ubiquitin conjugation f 99.0 1.5E-10 5.1E-15 122.3 5.6 75 30-106 885-960 (968)
93 2ecn_A Ring finger protein 141 99.0 7.5E-11 2.6E-15 86.4 1.9 53 30-85 9-61 (70)
94 2ep4_A Ring finger protein 24; 99.0 4E-10 1.4E-14 83.4 5.3 54 30-85 9-65 (74)
95 2l0b_A E3 ubiquitin-protein li 99.0 3.4E-10 1.2E-14 87.4 4.9 51 32-84 36-89 (91)
96 4fdd_A Transportin-1; heat rep 99.0 7E-09 2.4E-13 112.8 17.1 276 125-425 173-472 (852)
97 1bor_A Transcription factor PM 99.0 1E-10 3.5E-15 81.5 1.6 47 34-85 4-50 (56)
98 1chc_A Equine herpes virus-1 r 99.0 1.8E-10 6.2E-15 83.8 2.9 48 35-84 4-52 (68)
99 1iym_A EL5; ring-H2 finger, ub 99.0 2.9E-10 1E-14 78.9 3.1 48 33-82 2-53 (55)
100 4gmo_A Putative uncharacterize 98.9 4.6E-09 1.6E-13 111.3 13.4 197 169-377 35-258 (684)
101 2ecm_A Ring finger and CHY zin 98.9 2.9E-10 9.9E-15 78.9 2.7 47 35-83 4-54 (55)
102 4ap4_A E3 ubiquitin ligase RNF 98.9 2.3E-10 7.9E-15 95.1 2.5 54 34-89 5-65 (133)
103 1x4j_A Ring finger protein 38; 98.9 3.3E-10 1.1E-14 84.1 2.8 50 33-84 20-72 (75)
104 1b3u_A Protein (protein phosph 98.9 3.9E-08 1.3E-12 101.7 18.8 268 125-423 163-430 (588)
105 1b3u_A Protein (protein phosph 98.9 7.4E-08 2.5E-12 99.6 18.3 253 138-422 99-351 (588)
106 1v87_A Deltex protein 2; ring- 98.8 2.3E-09 7.8E-14 86.5 5.0 50 35-84 24-94 (114)
107 1ibr_B P95, importin beta-1 su 98.8 6.1E-08 2.1E-12 97.0 15.9 269 139-426 143-439 (462)
108 2vgl_B AP-2 complex subunit be 98.8 3E-07 1E-11 95.7 21.5 273 125-426 120-422 (591)
109 4ic3_A E3 ubiquitin-protein li 98.8 1.6E-09 5.3E-14 80.1 1.3 47 32-84 20-67 (74)
110 2y1n_A E3 ubiquitin-protein li 98.7 7.5E-09 2.6E-13 99.7 4.4 49 36-85 332-380 (389)
111 1wim_A KIAA0161 protein; ring 98.7 3.3E-09 1.1E-13 82.4 1.1 48 34-81 3-61 (94)
112 4ap4_A E3 ubiquitin ligase RNF 98.7 2.6E-09 9E-14 88.6 0.2 55 34-90 70-131 (133)
113 2vgl_B AP-2 complex subunit be 98.7 4.8E-07 1.7E-11 94.1 17.3 262 124-425 51-312 (591)
114 2ecl_A Ring-box protein 2; RNF 98.6 1.5E-08 5.3E-13 76.1 3.9 48 35-84 14-76 (81)
115 2ecg_A Baculoviral IAP repeat- 98.6 7.7E-09 2.6E-13 76.6 1.8 48 32-85 21-69 (75)
116 2vje_A E3 ubiquitin-protein li 98.6 3E-08 1E-12 70.8 3.4 47 35-83 7-56 (64)
117 1w63_A Adapter-related protein 98.6 3.1E-06 1.1E-10 88.5 19.8 216 128-377 144-379 (618)
118 1w63_A Adapter-related protein 98.5 7.4E-06 2.5E-10 85.6 21.8 252 125-422 106-377 (618)
119 3dpl_R Ring-box protein 1; ubi 98.5 5.7E-08 2E-12 76.7 4.3 46 36-83 37-100 (106)
120 2vje_B MDM4 protein; proto-onc 98.5 4.9E-08 1.7E-12 69.5 3.1 46 36-83 7-55 (63)
121 2bpt_A Importin beta-1 subunit 98.5 2.2E-06 7.6E-11 92.7 17.0 276 125-425 368-669 (861)
122 1qgr_A Protein (importin beta 98.5 3.1E-06 1.1E-10 91.7 17.9 277 125-425 171-480 (876)
123 1qgr_A Protein (importin beta 98.5 9E-06 3.1E-10 88.1 21.2 268 139-426 143-439 (876)
124 1ibr_B P95, importin beta-1 su 98.5 3.3E-06 1.1E-10 84.3 16.2 262 139-424 103-395 (462)
125 1u6g_C TIP120 protein, CAND1; 98.4 3E-06 1E-10 95.7 16.2 274 121-425 5-285 (1230)
126 2yho_A E3 ubiquitin-protein li 98.4 5E-08 1.7E-12 72.8 0.7 46 33-84 15-61 (79)
127 2ea5_A Cell growth regulator w 98.4 2.1E-07 7.2E-12 67.2 3.5 46 33-84 12-58 (68)
128 3b2a_A TON_1937, putative unch 98.4 2.2E-05 7.6E-10 69.5 16.9 200 123-357 34-233 (265)
129 2bpt_A Importin beta-1 subunit 98.3 4.4E-05 1.5E-09 82.5 22.5 283 125-425 133-441 (861)
130 2qk2_A LP04448P; mini spindles 98.3 9.8E-06 3.4E-10 74.0 13.9 188 220-426 18-207 (242)
131 2d8s_A Cellular modulator of i 98.3 1.1E-06 3.7E-11 65.5 5.9 52 34-85 13-71 (80)
132 3b2a_A TON_1937, putative unch 98.3 3.1E-05 1.1E-09 68.6 15.5 184 217-423 33-217 (265)
133 3t6p_A Baculoviral IAP repeat- 98.2 1.6E-07 5.5E-12 90.0 0.1 46 33-84 292-338 (345)
134 2qk2_A LP04448P; mini spindles 98.2 1.8E-05 6E-10 72.3 12.4 184 127-335 20-205 (242)
135 4a0k_B E3 ubiquitin-protein li 98.1 3.1E-07 1.1E-11 73.5 0.2 45 37-83 49-111 (117)
136 1te4_A Conserved protein MTH18 98.1 2.3E-07 8E-12 76.4 -1.2 119 216-373 11-129 (131)
137 2vgl_A Adaptor protein complex 98.1 0.00029 9.8E-09 73.5 21.8 243 138-422 160-431 (621)
138 2qk1_A Protein STU2; STU2P, XM 98.0 5.6E-05 1.9E-09 69.4 12.9 197 222-425 21-221 (249)
139 2qk1_A Protein STU2; STU2P, XM 98.0 8.6E-05 2.9E-09 68.2 13.3 191 127-335 21-220 (249)
140 3dad_A FH1/FH2 domain-containi 98.0 0.00021 7.3E-09 67.1 15.9 183 122-317 118-316 (339)
141 1te4_A Conserved protein MTH18 97.9 1.6E-06 5.5E-11 71.4 0.7 119 259-420 11-129 (131)
142 1ho8_A Vacuolar ATP synthase s 97.9 0.0013 4.4E-08 65.0 20.6 226 190-424 183-476 (480)
143 2vgl_A Adaptor protein complex 97.9 0.0023 7.8E-08 66.7 23.9 263 122-423 107-397 (621)
144 1u6g_C TIP120 protein, CAND1; 97.9 3E-05 1E-09 87.5 9.9 220 188-425 19-244 (1230)
145 2ct0_A Non-SMC element 1 homol 97.9 1.2E-05 3.9E-10 58.6 4.1 47 37-83 16-63 (74)
146 4ady_A RPN2, 26S proteasome re 97.8 0.0054 1.8E-07 65.8 25.5 242 138-427 407-679 (963)
147 3dad_A FH1/FH2 domain-containi 97.8 0.00059 2E-08 64.1 15.6 144 274-423 131-285 (339)
148 1ho8_A Vacuolar ATP synthase s 97.6 0.0051 1.7E-07 60.7 19.4 248 165-427 74-353 (480)
149 1vyx_A ORF K3, K3RING; zinc-bi 97.6 7E-05 2.4E-09 52.2 4.4 48 36-83 6-58 (60)
150 3vk6_A E3 ubiquitin-protein li 97.5 5.3E-05 1.8E-09 57.4 3.7 46 38-84 3-49 (101)
151 2db0_A 253AA long hypothetical 97.5 0.011 3.7E-07 50.5 17.6 105 216-334 31-135 (253)
152 2iw3_A Elongation factor 3A; a 97.5 0.016 5.5E-07 62.8 23.0 251 144-427 70-327 (986)
153 2iw3_A Elongation factor 3A; a 97.4 0.0045 1.5E-07 67.0 17.9 252 139-425 27-281 (986)
154 3tjz_B Coatomer subunit gamma; 97.3 0.0066 2.3E-07 58.2 16.3 233 138-423 80-315 (355)
155 4ady_A RPN2, 26S proteasome re 97.3 0.024 8.2E-07 60.9 21.5 98 218-335 578-676 (963)
156 2db0_A 253AA long hypothetical 97.3 0.067 2.3E-06 45.7 21.2 201 140-377 46-246 (253)
157 3tjz_B Coatomer subunit gamma; 96.8 0.07 2.4E-06 51.1 17.9 168 139-337 40-207 (355)
158 3k1l_B Fancl; UBC, ring, RWD, 96.8 0.0002 7E-09 66.9 0.1 49 35-83 307-372 (381)
159 4ffb_C Protein STU2; tubulin f 96.2 0.059 2E-06 49.7 12.8 196 218-424 11-212 (278)
160 3oc3_A Helicase MOT1, MOT1; re 96.2 0.054 1.9E-06 54.2 12.7 222 127-376 175-403 (800)
161 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0031 1.1E-07 48.8 2.6 33 35-67 2-37 (101)
162 4ffb_C Protein STU2; tubulin f 96.0 0.072 2.4E-06 49.1 12.3 188 128-335 15-212 (278)
163 2f31_A Diaphanous protein homo 96.0 0.41 1.4E-05 42.9 16.9 183 127-314 5-207 (233)
164 2fv2_A RCD1 required for cell 95.9 0.2 6.8E-06 45.0 14.0 186 230-425 14-225 (268)
165 3i2d_A E3 SUMO-protein ligase 95.9 0.0053 1.8E-07 58.3 4.0 65 36-100 249-316 (371)
166 2fv2_A RCD1 required for cell 95.8 0.38 1.3E-05 43.3 15.5 198 139-343 14-232 (268)
167 3nw0_A Non-structural maintena 95.6 0.0084 2.9E-07 54.1 4.2 49 36-84 180-229 (238)
168 4fo9_A E3 SUMO-protein ligase 95.3 0.012 4.2E-07 55.7 4.4 64 36-99 215-281 (360)
169 2of3_A ZYG-9; multifunctional 95.3 0.17 5.9E-06 46.2 11.9 171 138-334 58-235 (266)
170 1wa5_C Importin alpha RE-expor 95.3 0.81 2.8E-05 49.9 19.5 225 188-425 418-671 (960)
171 3eg5_B Protein diaphanous homo 94.9 1.1 3.6E-05 43.4 16.8 187 126-318 70-276 (383)
172 3ebb_A Phospholipase A2-activa 94.6 0.45 1.5E-05 44.4 12.9 167 140-316 116-286 (304)
173 3ebb_A Phospholipase A2-activa 94.6 0.37 1.3E-05 45.0 12.2 161 169-343 104-271 (304)
174 2bnx_A Diaphanous protein homo 94.4 1.9 6.6E-05 41.6 17.3 192 127-322 9-219 (386)
175 1wa5_C Importin alpha RE-expor 93.9 1.3 4.4E-05 48.3 16.9 193 169-378 288-526 (960)
176 1upk_A MO25 protein; transfera 93.6 1.7 5.8E-05 40.8 14.4 187 139-337 91-285 (341)
177 2x1g_F Cadmus; transport prote 93.6 3 0.0001 45.4 18.9 217 188-424 477-722 (971)
178 2f31_A Diaphanous protein homo 93.2 1.4 4.7E-05 39.4 12.9 127 298-425 36-181 (233)
179 2of3_A ZYG-9; multifunctional 93.2 1.4 4.7E-05 40.2 12.9 178 222-420 51-232 (266)
180 3c2g_A SYS-1 protein; beta-cat 93.0 1.3 4.6E-05 41.6 12.5 118 192-316 260-377 (619)
181 3eg5_B Protein diaphanous homo 92.9 1.7 5.7E-05 42.0 13.8 126 298-424 102-246 (383)
182 3u0r_A Apoptosis inhibitor 5; 92.3 1.1 3.7E-05 44.1 11.4 123 227-374 38-160 (507)
183 4hat_C Exportin-1; heat repeat 91.9 0.59 2E-05 51.3 10.3 143 229-381 465-622 (1023)
184 2x1g_F Cadmus; transport prote 91.5 1.6 5.4E-05 47.6 13.2 138 229-379 476-617 (971)
185 2x19_B Importin-13; nuclear tr 91.0 3.4 0.00012 44.8 15.2 173 227-422 459-644 (963)
186 4hat_C Exportin-1; heat repeat 90.8 2.6 9.1E-05 46.2 14.0 138 188-335 466-618 (1023)
187 3c2g_A SYS-1 protein; beta-cat 90.6 4.6 0.00016 38.0 13.1 177 237-422 263-468 (619)
188 2bnx_A Diaphanous protein homo 90.5 4.1 0.00014 39.3 13.6 127 298-425 40-185 (386)
189 2x19_B Importin-13; nuclear tr 89.7 7.8 0.00027 41.9 16.7 159 138-316 461-622 (963)
190 1weo_A Cellulose synthase, cat 89.6 0.45 1.6E-05 34.9 4.4 46 37-83 17-69 (93)
191 3u0r_A Apoptosis inhibitor 5; 89.1 7.2 0.00025 38.4 13.9 116 274-417 41-156 (507)
192 1upk_A MO25 protein; transfera 88.1 17 0.00059 34.0 19.2 247 163-425 73-333 (341)
193 2ko5_A Ring finger protein Z; 88.0 0.92 3.2E-05 33.7 5.2 53 30-85 22-74 (99)
194 2cs3_A Protein C14ORF4, MY039 87.1 0.61 2.1E-05 33.4 3.6 45 34-78 13-64 (93)
195 3ibv_A Exportin-T; karyopherin 84.9 25 0.00085 38.3 17.0 231 119-380 3-263 (980)
196 3ibv_A Exportin-T; karyopherin 83.6 51 0.0018 35.8 18.8 190 139-343 56-271 (980)
197 3oc3_A Helicase MOT1, MOT1; re 82.0 2.8 9.7E-05 42.2 7.1 195 189-420 188-400 (800)
198 3mjh_B Early endosome antigen 81.9 0.28 9.4E-06 29.3 -0.0 17 35-51 4-20 (34)
199 3m1i_C Exportin-1; heat repeat 81.8 28 0.00095 38.1 16.0 226 118-378 12-264 (1049)
200 3m1i_C Exportin-1; heat repeat 81.7 23 0.00079 38.8 15.4 117 169-291 448-570 (1049)
201 1lsh_A Lipovitellin (LV-1N, LV 81.4 55 0.0019 35.9 18.1 133 217-374 391-540 (1056)
202 1lsh_A Lipovitellin (LV-1N, LV 81.0 22 0.00076 39.0 14.8 105 215-335 354-469 (1056)
203 1lrv_A LRV, leucine-rich repea 79.3 0.73 2.5E-05 41.5 1.9 33 208-240 65-97 (244)
204 1x5b_A Signal transducing adap 78.6 8.6 0.00029 32.0 8.2 76 350-428 54-129 (163)
205 3pst_A Protein DOA1; protein d 75.5 38 0.0013 32.8 12.7 137 192-343 243-397 (425)
206 3l9t_A Putative uncharacterize 75.3 14 0.00049 32.7 9.0 143 219-391 73-217 (240)
207 1lrv_A LRV, leucine-rich repea 74.5 0.61 2.1E-05 42.1 -0.1 34 188-239 87-120 (244)
208 3l9t_A Putative uncharacterize 74.4 39 0.0013 29.9 11.5 92 188-293 117-210 (240)
209 3zyq_A Hepatocyte growth facto 73.5 8.3 0.00029 34.0 7.1 74 350-426 47-120 (226)
210 3gae_A Protein DOA1; UFD3, CDC 72.8 10 0.00035 34.1 7.7 100 228-335 101-217 (253)
211 3ldz_A STAM-1, signal transduc 71.8 13 0.00043 30.1 7.3 74 350-427 44-117 (140)
212 3l3f_X Protein DOA1, DOA1/UFD3 68.9 40 0.0014 31.9 11.0 129 192-335 180-326 (362)
213 1dvp_A HRS, hepatocyte growth 68.1 15 0.00052 32.1 7.6 74 350-426 44-117 (220)
214 3qml_C Protein SLS1, nucleotid 67.8 76 0.0026 29.2 12.4 148 218-376 23-188 (315)
215 1m3v_A FLIN4, fusion of the LI 67.7 3.2 0.00011 32.7 2.8 49 36-86 32-83 (122)
216 2jne_A Hypothetical protein YF 66.0 0.12 4.2E-06 38.5 -5.4 40 37-83 33-72 (101)
217 3ldz_A STAM-1, signal transduc 65.2 7.4 0.00025 31.5 4.6 72 261-335 43-114 (140)
218 3a6p_A Exportin-5; exportin-5, 65.0 1.7E+02 0.0058 32.5 17.0 210 139-379 26-278 (1204)
219 3g2s_A C-terminal fragment of 64.6 22 0.00074 29.1 7.3 74 350-426 50-128 (149)
220 3gjx_A Exportin-1; transport, 62.2 1.5E+02 0.0053 32.4 15.6 182 138-335 73-275 (1073)
221 1juq_A ADP-ribosylation factor 62.0 23 0.00077 29.7 7.2 74 350-426 52-130 (171)
222 1vdy_A Hypothetical protein (R 62.0 11 0.00038 30.4 5.0 75 350-427 51-133 (140)
223 1mhq_A ADP-ribosylation factor 61.9 19 0.00066 29.3 6.6 75 350-427 40-119 (148)
224 1e8j_A Rubredoxin; iron-sulfur 59.6 4.4 0.00015 26.7 1.8 19 27-45 27-45 (52)
225 3a6p_A Exportin-5; exportin-5, 59.2 2.2E+02 0.0075 31.6 19.8 182 138-336 59-277 (1204)
226 1wil_A KIAA1045 protein; ring 59.0 14 0.00047 26.8 4.4 39 28-66 7-47 (89)
227 1x5b_A Signal transducing adap 57.1 42 0.0015 27.7 8.0 74 217-291 52-126 (163)
228 4rxn_A Rubredoxin; electron tr 56.4 4.1 0.00014 27.1 1.2 19 27-45 27-45 (54)
229 3gjx_A Exportin-1; transport, 56.3 55 0.0019 35.9 10.8 98 230-335 492-595 (1073)
230 1elk_A Target of MYB1; superhe 55.9 41 0.0014 27.6 7.7 76 350-428 55-134 (157)
231 2jvx_A NF-kappa-B essential mo 55.2 3.3 0.00011 23.4 0.5 17 35-51 2-18 (28)
232 1wff_A Riken cDNA 2810002D23 p 54.6 20 0.00067 26.1 4.7 24 37-60 26-51 (85)
233 2kn9_A Rubredoxin; metalloprot 54.5 5.6 0.00019 28.8 1.8 18 28-45 52-69 (81)
234 2ct7_A Ring finger protein 31; 53.8 2.9 9.8E-05 30.8 0.1 29 38-66 27-61 (86)
235 1yk4_A Rubredoxin, RD; electro 52.8 5.1 0.00017 26.4 1.2 18 28-45 27-44 (52)
236 2xjy_A Rhombotin-2; oncoprotei 52.6 11 0.00037 29.8 3.5 49 34-84 27-78 (131)
237 2v3b_B Rubredoxin 2, rubredoxi 51.8 5.2 0.00018 26.6 1.2 18 28-45 28-45 (55)
238 3qml_C Protein SLS1, nucleotid 51.4 1.4E+02 0.0049 27.4 11.0 137 188-334 41-188 (315)
239 3g2s_A C-terminal fragment of 51.3 28 0.00096 28.4 5.8 73 260-335 48-126 (149)
240 6rxn_A Rubredoxin; electron tr 51.3 4.8 0.00016 25.8 0.8 17 29-45 23-39 (46)
241 2xqn_T Testin, TESS; metal-bin 50.8 8.8 0.0003 30.1 2.6 46 35-84 29-75 (126)
242 1mhq_A ADP-ribosylation factor 50.7 23 0.00077 28.9 5.1 73 260-335 38-116 (148)
243 1wen_A Inhibitor of growth fam 50.4 5.7 0.00019 28.0 1.2 54 28-82 8-66 (71)
244 2l43_A N-teminal domain from h 49.6 3.2 0.00011 30.7 -0.2 56 32-87 21-81 (88)
245 3zyq_A Hepatocyte growth facto 48.9 43 0.0015 29.3 7.1 74 217-291 45-119 (226)
246 1dx8_A Rubredoxin; electron tr 46.7 7 0.00024 27.5 1.2 19 28-46 32-50 (70)
247 1juq_A ADP-ribosylation factor 46.6 28 0.00094 29.1 5.2 72 261-335 51-128 (171)
248 1z60_A TFIIH basal transcripti 46.3 11 0.00039 25.4 2.1 39 38-78 17-58 (59)
249 1weu_A Inhibitor of growth fam 45.9 5.8 0.0002 29.5 0.7 54 28-82 28-86 (91)
250 1rut_X Flinc4, fusion protein 45.9 6.6 0.00023 33.5 1.2 47 35-84 31-81 (188)
251 2jrp_A Putative cytoplasmic pr 45.0 0.74 2.5E-05 33.4 -4.1 40 37-83 3-42 (81)
252 3gae_A Protein DOA1; UFD3, CDC 44.2 48 0.0017 29.6 6.8 101 188-293 103-220 (253)
253 2lri_C Autoimmune regulator; Z 42.7 19 0.00064 24.9 2.9 44 36-81 12-59 (66)
254 1s24_A Rubredoxin 2; electron 42.0 9.1 0.00031 28.1 1.2 17 29-45 61-77 (87)
255 1dvp_A HRS, hepatocyte growth 41.7 76 0.0026 27.5 7.5 73 217-290 42-115 (220)
256 3vhs_A ATPase wrnip1; zinc fin 41.0 6.5 0.00022 21.3 0.2 13 37-49 7-19 (29)
257 2rgt_A Fusion of LIM/homeobox 39.9 32 0.0011 28.5 4.6 48 34-85 31-78 (169)
258 2k16_A Transcription initiatio 39.2 6.4 0.00022 27.9 0.0 52 32-83 14-70 (75)
259 2jtn_A LIM domain-binding prot 38.9 23 0.00079 29.8 3.6 47 35-85 86-132 (182)
260 2o35_A Hypothetical protein DU 38.7 12 0.0004 28.0 1.4 13 57-69 42-54 (105)
261 2gmg_A Hypothetical protein PF 38.7 5.5 0.00019 30.3 -0.4 30 46-82 65-94 (105)
262 3fyb_A Protein of unknown func 38.6 12 0.0004 28.0 1.4 12 57-68 41-52 (104)
263 2eps_A POZ-, at HOOK-, and zin 38.0 65 0.0022 20.2 5.0 40 34-84 10-53 (54)
264 2lbm_A Transcriptional regulat 37.6 14 0.00046 30.0 1.7 42 36-79 63-115 (142)
265 3pst_A Protein DOA1; protein d 34.0 81 0.0028 30.5 6.8 100 188-292 275-391 (425)
266 1wfh_A Zinc finger (AN1-like) 33.8 38 0.0013 23.1 3.2 24 37-60 16-40 (64)
267 2cup_A Skeletal muscle LIM-pro 33.2 29 0.00098 25.7 2.9 46 35-84 32-78 (101)
268 2fiy_A Protein FDHE homolog; F 32.3 5.2 0.00018 37.2 -1.8 46 34-81 180-231 (309)
269 3uk3_C Zinc finger protein 217 31.8 31 0.0011 21.8 2.6 41 36-84 4-44 (57)
270 3o2t_A Symplekin; heat repeat, 31.0 1.4E+02 0.0049 28.4 8.0 109 216-334 62-182 (386)
271 1elk_A Target of MYB1; superhe 31.0 81 0.0028 25.8 5.6 73 261-335 54-130 (157)
272 2d8x_A Protein pinch; LIM doma 30.4 33 0.0011 23.4 2.6 33 35-67 30-63 (70)
273 2jmo_A Parkin; IBR, E3 ligase, 30.4 4.1 0.00014 29.5 -2.3 32 36-67 25-69 (80)
274 3gs3_A Symplekin, LD45768P; he 30.3 1.6E+02 0.0055 26.2 7.8 66 216-288 52-117 (257)
275 1wg2_A Zinc finger (AN1-like) 29.8 47 0.0016 22.7 3.1 25 36-60 15-40 (64)
276 2l5u_A Chromodomain-helicase-D 29.8 18 0.00062 24.4 1.1 46 33-80 8-57 (61)
277 3l3f_X Protein DOA1, DOA1/UFD3 28.7 94 0.0032 29.4 6.2 100 188-292 212-328 (362)
278 1wfl_A Zinc finger protein 216 28.6 73 0.0025 22.4 4.0 24 37-60 26-50 (74)
279 2lce_A B-cell lymphoma 6 prote 28.2 37 0.0013 23.0 2.6 40 34-84 15-57 (74)
280 3pwf_A Rubrerythrin; non heme 28.1 21 0.00073 29.8 1.5 10 73-82 154-163 (170)
281 2l4z_A DNA endonuclease RBBP8, 27.1 32 0.0011 26.8 2.3 37 37-83 62-99 (123)
282 4atg_A TAF6; transcription, TF 26.3 2.8E+02 0.0094 23.6 8.2 112 274-406 59-180 (196)
283 2dar_A PDZ and LIM domain prot 26.0 42 0.0014 24.3 2.6 23 38-60 27-49 (90)
284 4gzn_C ZFP-57, zinc finger pro 25.8 42 0.0014 22.3 2.4 38 36-84 4-44 (60)
285 2d8z_A Four and A half LIM dom 25.1 45 0.0015 22.6 2.6 33 35-67 30-63 (70)
286 1x61_A Thyroid receptor intera 25.1 67 0.0023 21.8 3.5 33 35-67 32-65 (72)
287 2ku3_A Bromodomain-containing 25.1 12 0.0004 26.4 -0.6 47 34-80 14-65 (71)
288 2cur_A Skeletal muscle LIM-pro 25.1 57 0.002 22.0 3.1 33 35-67 30-63 (69)
289 1iml_A CRIP, cysteine rich int 25.0 41 0.0014 23.3 2.4 43 35-81 26-70 (76)
290 1wig_A KIAA1808 protein; LIM d 24.3 27 0.00093 24.2 1.2 34 34-67 29-64 (73)
291 1f2i_G Fusion of N-terminal 17 24.1 68 0.0023 21.4 3.4 43 34-84 17-61 (73)
292 1j2o_A FLIN2, fusion of rhombo 24.0 87 0.003 23.8 4.3 33 35-67 29-64 (114)
293 1x6a_A LIMK-2, LIM domain kina 23.6 62 0.0021 22.6 3.2 34 34-67 39-75 (81)
294 1wd2_A Ariadne-1 protein homol 23.3 4.6 0.00016 27.4 -2.9 31 37-67 7-45 (60)
295 1nyp_A Pinch protein; LIM doma 23.2 38 0.0013 22.7 1.8 33 35-67 30-63 (66)
296 2lv2_A Insulinoma-associated p 23.1 1.2E+02 0.0043 21.5 4.8 40 34-84 26-68 (85)
297 2ebt_A Krueppel-like factor 5; 23.0 1.1E+02 0.0039 21.6 4.7 16 33-48 12-29 (100)
298 3vth_A Hydrogenase maturation 22.8 33 0.0011 36.0 2.0 51 33-83 108-194 (761)
299 2gvi_A Conserved hypothetical 22.8 35 0.0012 29.4 1.9 34 32-65 168-202 (204)
300 2pv0_B DNA (cytosine-5)-methyl 22.8 1E+02 0.0035 29.3 5.2 44 37-81 94-148 (386)
301 2ffw_A Midline-1; B-BOX, ring 22.5 1.7E+02 0.0059 20.5 5.3 32 34-65 28-62 (78)
302 1joc_A EEA1, early endosomal a 22.4 21 0.00073 28.1 0.4 29 37-65 70-102 (125)
303 1x64_A Alpha-actinin-2 associa 22.2 2.1E+02 0.0073 20.2 6.4 44 32-85 21-64 (89)
304 1vq8_Z 50S ribosomal protein L 21.9 19 0.00064 26.2 -0.1 39 35-92 26-65 (83)
305 1x62_A C-terminal LIM domain p 21.9 36 0.0012 23.9 1.5 20 38-57 17-36 (79)
306 2cor_A Pinch protein; LIM doma 21.2 29 0.001 24.5 0.9 31 35-65 40-70 (79)
307 1vd4_A Transcription initiatio 20.8 7.8 0.00027 25.9 -2.2 40 35-85 13-52 (62)
308 2xpp_A IWS1, ECU08_0440; trans 20.5 3.3E+02 0.011 21.8 7.2 80 159-244 52-134 (145)
309 2epr_A POZ-, at HOOK-, and zin 20.4 47 0.0016 20.2 1.7 36 34-80 10-48 (48)
310 1wyh_A SLIM 2, skeletal muscle 20.2 55 0.0019 22.3 2.2 33 35-67 32-65 (72)
311 1b8t_A Protein (CRP1); LIM dom 20.1 1.1E+02 0.0036 25.8 4.4 34 34-67 32-66 (192)
312 2epq_A POZ-, at HOOK-, and zin 20.1 73 0.0025 18.8 2.6 14 36-49 10-23 (45)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.2e-33 Score=275.79 Aligned_cols=275 Identities=16% Similarity=0.144 Sum_probs=232.4
Q ss_pred hhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcc--c--ccccchHHHHHHHHHHHhhcCCChhhhhhcc-
Q 038250 140 QAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSK--T--CLDENVSVLEEILSTLTLLFPLAGEGLTYLG- 214 (444)
Q Consensus 140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~--~--~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~- 214 (444)
.+.+..|+++|.+++.+ +++|..|++.|++++|+.+|.+..+ + ....++.+++.|+++|..++..++++|..+.
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566899999999976 7899999999999999999953210 0 0012478999999999944445566888875
Q ss_pred cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-chhhHHHhhcccccHHHHHHHh-cCCCChHHHHHHHHHHHHHhcCC
Q 038250 215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS-DHRKVNVLLDIEGAIEPLFKLI-KEPICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 215 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~-~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~aL~~L~~~~ 292 (444)
..|+||.|+.+|++++.++++.|+++|+||+.. ++++|..| ...|+||+||++| +++ ++++++.|+++|+||+.+.
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i-~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL-REVGSVKALMECALEVK-KESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHH-HHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccC
Confidence 456699999999999999999999999999653 56889999 4579999999985 455 7899999999999999854
Q ss_pred CCCCchhHHHH-hcCcHHHHHHHhhcccc----chHHHHHHHHHHhcC----ChhhHHHHhcCCCChHHHHHHHhhcChh
Q 038250 293 SATEKPIQKFV-DMGLVSLLLEMLVDAQR----SLCEKALSVLDGLCS----SDYGRGDAYNNSLIFPVIVKKILRVSDL 363 (444)
Q Consensus 293 ~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~ll~~~~~~ 363 (444)
+ +++..++ ..|+|+.|+++|.+++. .+++.|+++|++|+. .++++..+ .+.|+++.|+++|.+++..
T Consensus 203 ~---~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~ 278 (354)
T 3nmw_A 203 T---ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-RENNCLQTLLQHLKSHSLT 278 (354)
T ss_dssp H---HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HTTTHHHHHHHHTTCSCHH
T ss_pred h---hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHH-HHcCCHHHHHHHHcCCChH
Confidence 2 3888888 79999999999987654 489999999999995 77777777 8999999999999999999
Q ss_pred HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 364 ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
+++.|+++|++|+. ++++.+..+++.|++++|+++|+++ ++++++.|+++|..+....
T Consensus 279 v~~~A~~aL~nLa~----~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 279 IVSNACGTLWNLSA----RNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHHHHTS----SCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC----CCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 99999999999997 3477888888999999999999998 9999999999888887653
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=273.27 Aligned_cols=271 Identities=16% Similarity=0.149 Sum_probs=228.3
Q ss_pred HHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcc--c--ccccchHHHHHHHHHHHhhcCCChhhhhhcc-cCCcH
Q 038250 145 DLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSK--T--CLDENVSVLEEILSTLTLLFPLAGEGLTYLG-SASSM 219 (444)
Q Consensus 145 ~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~--~--~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~-~~g~i 219 (444)
+|+++|.+++.+ +++|..|++.|++++|+.+|.+..+ + ....++.+++.|+++|.+++..+++++..+. ..|+|
T Consensus 167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 899999999765 8899999999999999999953100 0 0012477999999999955555566887775 45679
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc-chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 220 RCMVWFLKSGDLSRRRNAVLVLREIVSS-DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
|.|+.+|++++.++++.|+++|+||+.. +++++..| ...|+||+||++|....++.+++.|+++|+||+.+.+ ++
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I-~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~---~n 321 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL-REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT---EN 321 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHH-HHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH---HH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHH-HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH---HH
Confidence 9999999999999999999999999543 56899999 4579999999986543378999999999999999432 38
Q ss_pred hHHHH-hcCcHHHHHHHhhcccc----chHHHHHHHHHHhcC----ChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHH
Q 038250 299 IQKFV-DMGLVSLLLEMLVDAQR----SLCEKALSVLDGLCS----SDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAV 369 (444)
Q Consensus 299 ~~~i~-~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~ 369 (444)
+..++ ..|+++.|+++|..++. .+++.|+++|++|+. .++++..+ .+.|+++.|+.+|.+++..+++.|+
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i-~~~G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-RENNCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHcccHHHHHHHHcCCChHHHHHHH
Confidence 88888 79999999999987654 389999999999994 67777666 8899999999999989999999999
Q ss_pred HHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 370 SILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 370 ~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
++|++|+. ++++.+..+++.|++++|+.+|+++ ++++++.|+++|..+..+.
T Consensus 401 ~aL~nLa~----~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 401 GTLWNLSA----RNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHS----SCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 99999997 3477888888999999999999998 9999999999888887553
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.4e-31 Score=269.89 Aligned_cols=288 Identities=14% Similarity=0.087 Sum_probs=238.0
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.++.++..|.+. +.+.+..|+.+|++++..++.++..+++.|+||.|+++|++ + ++.+++.|+++|..+
T Consensus 3 ~l~~lv~~L~s~----~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s---~----~~~~~~~A~~aL~nL 71 (457)
T 1xm9_A 3 TIPKAVQYLSSQ----DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS---P----NQNVQQAAAGALRNL 71 (457)
T ss_dssp CHHHHHHHHHSS----CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS---S----CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC---C----CHHHHHHHHHHHHHH
Confidence 467889988876 78899999999999998888788899999999999999953 2 588999999999944
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc--------CC-
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLK-SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK--------EP- 272 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~--------~~- 272 (444)
...++++|..|++.|+||.|+++|+ ++++++++.|+++|+||+. +++++..| .. |+||+|+++|. ++
T Consensus 72 a~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~-~~~~~~~i-~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 72 VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-TDELKEEL-IA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-SSSTHHHH-HH-HHHHHHHHHTTHHHHTCC----
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc-CHHhHHHH-Hh-ccHHHHHHHHhccccccccCcc
Confidence 4445999999999999999999999 8899999999999999965 47899988 45 99999999993 22
Q ss_pred ------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc-CcHHHHHHHhhc------cccchHHHHHHHHHHhcCChhh
Q 038250 273 ------ICPTATKASLVVVYRTITSASATEKPIQKFVDM-GLVSLLLEMLVD------AQRSLCEKALSVLDGLCSSDYG 339 (444)
Q Consensus 273 ------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~-g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~~~ 339 (444)
.++.+.+.|+|+|+||+.+++ ++..+++. |++++|+.+|.+ .+..++++|+++|.+|+...+.
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~ 224 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSADA----GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA 224 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTSHH----HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH
T ss_pred chhcccccHHHHHHHHHHHHHHccCHH----HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhc
Confidence 245677799999999998854 99999998 999999999985 3567899999999999742110
Q ss_pred --------------------------------------------------HHHHhcCCCChHHHHHHHhhc-ChhHHHHH
Q 038250 340 --------------------------------------------------RGDAYNNSLIFPVIVKKILRV-SDLATEFA 368 (444)
Q Consensus 340 --------------------------------------------------~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a 368 (444)
..+.+.+.|+++.|+.+|..+ ++.+++.|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a 304 (457)
T 1xm9_A 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp HSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred cCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHH
Confidence 111236678899999999875 68899999
Q ss_pred HHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCC
Q 038250 369 VSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARL 429 (444)
Q Consensus 369 ~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~ 429 (444)
+++|++|+...........+.++ ++|+++.|+++|+++ ++++++.|+++|+.++.+.++.
T Consensus 305 ~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~~~~ 365 (457)
T 1xm9_A 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLLH 365 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred HHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCHHHH
Confidence 99999999854321112224455 689999999999999 9999999999999998765543
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.98 E-value=5.1e-31 Score=270.53 Aligned_cols=293 Identities=14% Similarity=0.117 Sum_probs=240.1
Q ss_pred ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250 120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL 199 (444)
Q Consensus 120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L 199 (444)
....++.+|..|.+. +.+.+..|+++|++++..++.+|..+++.|+||+||++|++. +.++++.|+++|
T Consensus 46 ~~~~i~~LV~~L~s~----~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-------~~~vq~~Aa~AL 114 (584)
T 3l6x_A 46 RQPELPEVIAMLGFR----LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-------KKEVHLGACGAL 114 (584)
T ss_dssp CCCCHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-------SHHHHHHHHHHH
T ss_pred ccccHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-------CHHHHHHHHHHH
Confidence 345689999999875 888999999999999998899999999999999999999642 589999999999
Q ss_pred HhhcCC--ChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc------
Q 038250 200 TLLFPL--AGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK------ 270 (444)
Q Consensus 200 ~~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~------ 270 (444)
. +++. ++++|..|+++|+|+.||.+|++ ++.+++++|+++|++| +.+++++..|+ .|+||+|++++.
T Consensus 115 ~-nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL-S~~~~~k~~I~--~~alp~Lv~LL~~p~sg~ 190 (584)
T 3l6x_A 115 K-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV--DHALHALTDEVIIPHSGW 190 (584)
T ss_dssp H-HHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH-TTSGGGHHHHH--HHTHHHHHHHTHHHHHCC
T ss_pred H-HHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCchhhHHHH--hccHHHHHHHHhcccccc
Confidence 9 6665 48999999999999999999998 5789999999999999 56889999994 378999999872
Q ss_pred -----------CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc-CcHHHHHHHhhc------cccchHHHHHHHHHH
Q 038250 271 -----------EPICPTATKASLVVVYRTITSASATEKPIQKFVDM-GLVSLLLEMLVD------AQRSLCEKALSVLDG 332 (444)
Q Consensus 271 -----------~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~-g~v~~Lv~lL~~------~~~~~~~~a~~~L~~ 332 (444)
+..++.++++|+++|+||+.+++ .++..+++. |++++|+.+|.+ .+...+++|+++|+|
T Consensus 191 ~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~---~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N 267 (584)
T 3l6x_A 191 EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS---EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 267 (584)
T ss_dssp C----------CCCCHHHHHHHHHHHHHHTSSCH---HHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhcCCH---HHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 11257899999999999999875 358888885 667899999975 366789999999999
Q ss_pred hcCChhhHH-------------------------HHhcCCCChHHHHHHHhh-cChhHHHHHHHHHHHHccccccchHHH
Q 038250 333 LCSSDYGRG-------------------------DAYNNSLIFPVIVKKILR-VSDLATEFAVSILWKLCKNEEREEKTA 386 (444)
Q Consensus 333 L~~~~~~~~-------------------------~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~ 386 (444)
|+...+... ..+.+.++|+.|+.+|.. .++.+++.|+++|++||...+.. ...
T Consensus 268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~-~~~ 346 (584)
T 3l6x_A 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY-GRY 346 (584)
T ss_dssp HHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH-HHH
T ss_pred hhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc-cHH
Confidence 997632110 111334556788998875 47889999999999998753221 122
Q ss_pred HHHHH-hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCC
Q 038250 387 FAEAL-QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECI 432 (444)
Q Consensus 387 ~~~~~-~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~~~~~ 432 (444)
.+.++ +.|+++.|+.||.++ ++.+++.|+++|+.++.+.++..-|
T Consensus 347 ~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I 392 (584)
T 3l6x_A 347 IRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELI 392 (584)
T ss_dssp HHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhHHHHH
Confidence 33344 789999999999999 9999999999999999887655443
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=2.7e-30 Score=265.89 Aligned_cols=285 Identities=14% Similarity=0.132 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHh-ccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWT-KESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~-~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
..++++|+.|.+. |.+.+..|+.++|++. ++.....+.++++|+||.||++|++. + ++.+|..|+++|.
T Consensus 57 ~~i~~~v~~l~s~----d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~--~----~~~lq~~Aa~aL~ 126 (510)
T 3ul1_B 57 WSVEDIVKGINSN----NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--D----CSPIQFESAWALT 126 (510)
T ss_dssp CCHHHHHHHHTSS----CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT--T----CHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC--C----CHHHHHHHHHHHH
Confidence 3588899988876 8999999999999865 44444578999999999999999532 2 5889999999999
Q ss_pred hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC--------
Q 038250 201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP-------- 272 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~-------- 272 (444)
++.+.+++++..+++.|+||.|+.+|++++.++++.|+++|+||+..+++++..+ ...|++++|+.+|...
T Consensus 127 nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v-~~~G~i~~Ll~lL~~~~~~~~~~~ 205 (510)
T 3ul1_B 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV-IKHGAIDPLLALLAVPDLSTLACG 205 (510)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH-HHcCChHHHHHHHHhccchhhhHH
Confidence 6667888999999999999999999999999999999999999977778888887 5578888888877532
Q ss_pred --------------------------------------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHH
Q 038250 273 --------------------------------------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEM 314 (444)
Q Consensus 273 --------------------------------------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~l 314 (444)
.+++++..|+++|.+|+.+.. .....+++.|+++.|+++
T Consensus 206 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN---ERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH---HHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh---hhHHHHHhcccchhhhhh
Confidence 134555666666666665543 345667889999999999
Q ss_pred hhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhC
Q 038250 315 LVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVG 394 (444)
Q Consensus 315 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g 394 (444)
|.+++..++..++.+|++|+..++.....+.+.|+++.|+.+|.+.++.+++.|+++|.+|+.. +......+++.|
T Consensus 283 L~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~----~~~~~~~v~~~g 358 (510)
T 3ul1_B 283 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----RQDQIQQVVNHG 358 (510)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS----CHHHHHHHHHTT
T ss_pred hcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC----cHHHHHHHHhcC
Confidence 9999999999999999999987776666668999999999999888999999999999999984 466777788999
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 395 AFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 395 ~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+++.|+.+++++ +..+|+.|+++|..+...
T Consensus 359 ~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 359 LVPFLVGVLSKA-DFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHHcc
Confidence 999999999999 899999999988877653
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=261.08 Aligned_cols=295 Identities=15% Similarity=0.081 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHhhcc--------cCChhHHHHHHHHHHHHhccCcccchhHhhcCch----------HHHHHHHHhhccc
Q 038250 122 VEVFEINCNITTACK--------SEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAV----------SVLAEAFETFSKT 183 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~--------~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i----------~~Lv~lL~~~~~~ 183 (444)
+-++.++..|..... +++++.+.+|+++|.+++...++.....++.|++ +.+++++.+...+
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 346778888876421 1457899999999999999988888888888888 6666666542101
Q ss_pred cc-ccchHHHH-------HHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhc-----------CCHHHHHHHHHHHHHH
Q 038250 184 CL-DENVSVLE-------EILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKS-----------GDLSRRRNAVLVLREI 244 (444)
Q Consensus 184 ~~-~~~~~~~~-------~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~L 244 (444)
.. +.++ +.+ .|+++|. +++.++++|..|.+.|++++|+.+|.. .++.+++.|+++|.||
T Consensus 150 ~~~~~~~-~~~~~~~~~~qAv~aL~-nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 150 MDQDKNP-MPAPVEHQICPAVCVLM-KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SCCCSCC---CCCTTTTHHHHHHHH-HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCC-ccchhhHHHHHHHHHHH-HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 00 0011 433 8999999 889999999999999999999999953 2477899999999999
Q ss_pred HhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh-hccccchH
Q 038250 245 VSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML-VDAQRSLC 323 (444)
Q Consensus 245 ~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~~~ 323 (444)
+..++.++..+....|+||+||++|+++ ++++++.|+++|+||+.+.+ +.++..+++.|+|++|+++| .+++..++
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~--~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRAD--VNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCC--HHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC--HHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 8777778887744457799999999988 89999999999999998522 24899999999999999986 55688899
Q ss_pred HHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhcCh----hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250 324 EKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRVSD----LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398 (444)
Q Consensus 324 ~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~----~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~ 398 (444)
+.|+.+|++|+. +++++..++...|+++.|+++|.+.++ .+++.|+++|++|+.+-. ++++.++.+++.|++++
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a-~~~~~~~~i~~~G~i~~ 383 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA-TNEDHRQILRENNCLQT 383 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHcccHHH
Confidence 999999999998 778888885589999999999987654 489999999999995200 12667788889999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 399 LLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 399 Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
|+.+|+++ +..+++.|+++|..++
T Consensus 384 Lv~LL~~~-~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 384 LLQHLKSH-SLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHSSCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-ChHHHHHHHHHHHHHH
Confidence 99999998 8899999999888887
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=2.8e-29 Score=265.85 Aligned_cols=282 Identities=12% Similarity=0.040 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc-----------------------------cc---hhHhhcCc
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR-----------------------------NK---RCIVDNGA 169 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~-----------------------------~~---~~i~~~G~ 169 (444)
+.++.|+..|++. +...+..|++.|.+++...+. ++ +.++++|+
T Consensus 421 g~Ip~LV~LL~s~----d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa 496 (810)
T 3now_A 421 ASIHALMDLARGG----NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496 (810)
T ss_dssp HHHHHHHHHHHTT----CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred chHHHHHHHhCCC----ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence 3466777777654 788999999999999985431 12 67889999
Q ss_pred hHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch
Q 038250 170 VSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH 249 (444)
Q Consensus 170 i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~ 249 (444)
+|.|+.+|++. ++.+++.|+++|. +++.++++|..+++.|++|+|+.+|++++...++.|+++|.+|+...+
T Consensus 497 Vp~LV~LL~s~-------s~~vqe~Aa~aL~-NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 497 TTALCALAKTE-------SHNSQELIARVLN-AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHHHHHTCC-------CHHHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCC-------CHHHHHHHHHHHH-HHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 99999999532 5899999999999 778888999999999999999999999999999999999999964332
Q ss_pred hhHHHhh--cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHH
Q 038250 250 RKVNVLL--DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKAL 327 (444)
Q Consensus 250 ~~~~~i~--~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~ 327 (444)
. ...+. ...|+||+|+.+|.++.+...+..|+++|.||+.+.+ +++..++++|+++.|+.+|.++++.+++.|+
T Consensus 569 p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d---~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 569 P-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE---SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp H-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHH
T ss_pred h-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH---HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 2 22221 1247999999999866344556789999999999864 4899999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHh-hChHHHHHHHHhcC
Q 038250 328 SVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQ-VGAFQKLLLLLQVG 406 (444)
Q Consensus 328 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~-~g~l~~Ll~ll~~~ 406 (444)
++|+||+.+++.+..++...|+++.|+.++.+.+..+++.|+++|++|+.. ++...+.+++ .|++++|+.+++++
T Consensus 645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~----s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV----SVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 999999999999988853479999999999888899999999999999983 4667788887 99999999999998
Q ss_pred CChHHHHHHHHHHHHHHh
Q 038250 407 CADKTKEHVSELLKLLNP 424 (444)
Q Consensus 407 ~~~~~k~~a~~ll~~l~~ 424 (444)
+.++++.|++++..+..
T Consensus 721 -d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 721 -SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp -SHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHh
Confidence 99999999997777654
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=4.7e-29 Score=257.86 Aligned_cols=284 Identities=14% Similarity=0.135 Sum_probs=237.4
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHh-ccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWT-KESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~-~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
.++.++..+.+. |.+.+..|+..++++. .+.....+.+++.|+||.||++|... + ++.++..|+++|..
T Consensus 77 ~l~~lv~~l~s~----d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~--~----~~~~q~~Aa~aL~n 146 (529)
T 3tpo_A 77 SVEDIVKGINSN----NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--D----CSPIQFESAWALTN 146 (529)
T ss_dssp CHHHHHHHHTSS----CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT--T----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC--C----CHHHHHHHHHHHHH
Confidence 467788877765 8999999999999865 44445578899999999999999531 2 58899999999996
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC---------
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP--------- 272 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~--------- 272 (444)
+.+.+++++..+++.|+||.|+.+|.+++.++++.|+++|+||+..+++++..+ ...|++++|+.+|..+
T Consensus 147 ia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i-~~~g~i~~Ll~lL~~~~~~~~~~~~ 225 (529)
T 3tpo_A 147 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV-IKHGAIDPLLALLAVPDLSTLACGY 225 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHTTCSSCGGGSCHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHH-HHcCCcHHHHHHHhccchhHhHHHH
Confidence 667778888899999999999999999999999999999999977778888888 5578888888777532
Q ss_pred -------------------------------------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHh
Q 038250 273 -------------------------------------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEML 315 (444)
Q Consensus 273 -------------------------------------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL 315 (444)
.+++++..|+|+|.+|+.+.. .....+++.|+++.|+++|
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~---~~~~~v~~~g~i~~Lv~lL 302 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN---ERIEMVVKKGVVPQLVKLL 302 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH---HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh---hhHHHHHhccchHHHHHHh
Confidence 134555566666666665543 3556678899999999999
Q ss_pred hccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhCh
Q 038250 316 VDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGA 395 (444)
Q Consensus 316 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~ 395 (444)
.+.+..++..++.+|++|+.+++.....+.+.|+++.|+.+|.+.++.+++.|+++|++|+.+ +......+++.|+
T Consensus 303 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~----~~~~~~~v~~~g~ 378 (529)
T 3tpo_A 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----RQDQIQQVVNHGL 378 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS----CHHHHHHHHHTTH
T ss_pred cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc----cHHHHHHHHhcCc
Confidence 999999999999999999987766666658999999999999988999999999999999984 4667777889999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 396 FQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 396 l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
++.|+.+|.++ +..+++.|+++|..+...
T Consensus 379 i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 379 VPFLVGVLSKA-DFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence 99999999999 899999999988777643
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2e-29 Score=255.71 Aligned_cols=287 Identities=11% Similarity=0.056 Sum_probs=232.9
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++.++..|.+. +.+.+..|+++|++++..++++|..|++.|+||.|+++|.. .+ +.++++.|+++|.
T Consensus 44 g~i~~Lv~lL~s~----~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~--~~----~~~~~~~a~~aL~- 112 (457)
T 1xm9_A 44 GGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR--TG----NAEIQKQLTGLLW- 112 (457)
T ss_dssp THHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT--CC----CHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh--CC----CHHHHHHHHHHHH-
Confidence 5577888888764 88899999999999999888999999999999999999951 22 5889999999999
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHh--------cC--------CHHHHHHHHHHHHHHHhcchhhHHHhhccc-ccHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLK--------SG--------DLSRRRNAVLVLREIVSSDHRKVNVLLDIE-GAIEP 264 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~-g~i~~ 264 (444)
+++.++++|..+++ |++|.|+.+|. ++ +.++..+|+++|+||+. +++++..| ... |++++
T Consensus 113 nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~-~~~~~~~i-~~~~g~i~~ 189 (457)
T 1xm9_A 113 NLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS-ADAGRQTM-RNYSGLIDS 189 (457)
T ss_dssp HHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT-SHHHHHHH-TTSTTHHHH
T ss_pred HHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc-CHHHHHHH-HHcCCCHHH
Confidence 77777889998998 99999999993 33 34556699999999964 58899988 545 99999
Q ss_pred HHHHhcCC------------------------------------------------------------------------
Q 038250 265 LFKLIKEP------------------------------------------------------------------------ 272 (444)
Q Consensus 265 Lv~ll~~~------------------------------------------------------------------------ 272 (444)
|+.+|+++
T Consensus 190 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
T 1xm9_A 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269 (457)
T ss_dssp HHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCC
T ss_pred HHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccc
Confidence 99888630
Q ss_pred --------------------------CChHHHHHHHHHHHHHhcCCCCCC-ch-hHHHHhcCcHHHHHHHhhccccchHH
Q 038250 273 --------------------------ICPTATKASLVVVYRTITSASATE-KP-IQKFVDMGLVSLLLEMLVDAQRSLCE 324 (444)
Q Consensus 273 --------------------------~~~~~~~~a~~aL~~L~~~~~~~~-~~-~~~i~~~g~v~~Lv~lL~~~~~~~~~ 324 (444)
.++..++.|+|+|.||+.++.... .. +..+.++|++|.|+++|.+++..++.
T Consensus 270 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~ 349 (457)
T 1xm9_A 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVR 349 (457)
T ss_dssp CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHH
T ss_pred ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHH
Confidence 124566778999999998764000 11 22334689999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh------hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250 325 KALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD------LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398 (444)
Q Consensus 325 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~ 398 (444)
.|+++|.+|+.+++.+..+ . .|+++.|+++|...+. .+...++++|.++... +.+....+.+.|++++
T Consensus 350 ~A~~aL~nls~~~~~~~~i-~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~----~~~~~~~i~~~g~l~~ 423 (457)
T 1xm9_A 350 SGASLLSNMSRHPLLHRVM-G-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS----QPQLAKQYFSSSMLNN 423 (457)
T ss_dssp HHHHHHHHHHTSGGGHHHH-H-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT----CTHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHH-H-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhc----CHHHHHHHHHcCCHHH
Confidence 9999999999988777665 3 4899999999987532 4677899999999874 4567777779999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhccC
Q 038250 399 LLLLLQVGCADKTKEHVSELLKLLNPHRAR 428 (444)
Q Consensus 399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~ 428 (444)
|+.++.++.++++++.|.++|..+-.+.+.
T Consensus 424 L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 424 IINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence 999999886789999999998877655543
No 10
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.8e-29 Score=259.12 Aligned_cols=287 Identities=13% Similarity=0.096 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc-CcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKE-SDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
+.|+.|+..|.+. +.+.+..|+++|++++.. ++++|..|+++|+||.|+.+|.+. . +.++++.|+.+|.
T Consensus 90 G~Ip~LV~LL~s~----~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~--~----~~~~~e~aa~aL~ 159 (584)
T 3l6x_A 90 KGIPVLVGLLDHP----KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA--R----DMDLTEVITGTLW 159 (584)
T ss_dssp THHHHHHHGGGCS----SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC--C----SHHHHHHHHHHHH
T ss_pred CCcHHHHHHHCCC----CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC--C----CHHHHHHHHHHHH
Confidence 4577888888765 889999999999999985 688999999999999999999642 1 4789999999999
Q ss_pred hhcCCChhhhhhcccCCcHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH
Q 038250 201 LLFPLAGEGLTYLGSASSMRCMVWFLK------------------SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI 262 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~------------------~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i 262 (444)
+++.++++|..|++ ++|+.|+++|. ..+.+++++|+++|+||++.+++++..|....|++
T Consensus 160 -nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 160 -NLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp -HHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred -HHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 88889999999985 67999999872 12478999999999999766677788885556777
Q ss_pred HHHHHHhcC------C----------------------------------------------------------------
Q 038250 263 EPLFKLIKE------P---------------------------------------------------------------- 272 (444)
Q Consensus 263 ~~Lv~ll~~------~---------------------------------------------------------------- 272 (444)
++||++|++ .
T Consensus 238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL 317 (584)
T 3l6x_A 238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317 (584)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence 788887752 1
Q ss_pred ---CChHHHHHHHHHHHHHhcCCCCC-CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCC
Q 038250 273 ---ICPTATKASLVVVYRTITSASAT-EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSL 348 (444)
Q Consensus 273 ---~~~~~~~~a~~aL~~L~~~~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 348 (444)
.++.++++|++||.||+.+.... ..++..+.+.|+++.|+++|.+++..+++.|+++|.||+.+..++..| ..|
T Consensus 318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I--~~g 395 (584)
T 3l6x_A 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI--GKH 395 (584)
T ss_dssp HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH--HHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH--HhC
Confidence 12344455555555555443100 012334456799999999999999999999999999999988887655 469
Q ss_pred ChHHHHHHHhhc--------ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC-CChHHHHHHHHHH
Q 038250 349 IFPVIVKKILRV--------SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG-CADKTKEHVSELL 419 (444)
Q Consensus 349 ~i~~Lv~ll~~~--------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~-~~~~~k~~a~~ll 419 (444)
+||.||.+|.++ +..+...|+++|.||+. ++.+..+.++++|+|+.|+.+++++ .++.+++.|+.+|
T Consensus 396 ~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a----~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL 471 (584)
T 3l6x_A 396 AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA----ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL 471 (584)
T ss_dssp HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT----TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc----CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHH
Confidence 999999999765 35677899999999987 4577888888999999999999985 4789999999999
Q ss_pred HHHHhhc
Q 038250 420 KLLNPHR 426 (444)
Q Consensus 420 ~~l~~~~ 426 (444)
..+..+.
T Consensus 472 ~nl~~~~ 478 (584)
T 3l6x_A 472 QTIWGYK 478 (584)
T ss_dssp HHHHTSH
T ss_pred HHHHcCH
Confidence 9887654
No 11
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.9e-29 Score=246.20 Aligned_cols=247 Identities=12% Similarity=0.074 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHhhc-------ccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHH
Q 038250 122 VEVFEINCNITTAC-------KSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLE 193 (444)
Q Consensus 122 ~~i~~ll~~L~~~~-------~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~ 193 (444)
+.++.|+..|.+.. ...+...+++|+++|.+++..++.+|..+.. .|+||.|+.+|++ + +.++++
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s---~----~~~v~~ 145 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS---E----SEDLQQ 145 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC---S----CHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC---C----CHHHHH
Confidence 45777888875321 1124568999999999999888878888865 5669999999953 2 588999
Q ss_pred HHHHHHHhhcCC--ChhhhhhcccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc
Q 038250 194 EILSTLTLLFPL--AGEGLTYLGSASSMRCMVWFL-KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK 270 (444)
Q Consensus 194 ~a~~~L~~~l~~--~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~ 270 (444)
.|+++|. +++. ++++|..|++.|+||.|+.+| ++++.++++.|+.+|++|+..+++++..|+...|+||+|+++|+
T Consensus 146 ~A~~aL~-nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~ 224 (354)
T 3nmw_A 146 VIASVLR-NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 224 (354)
T ss_dssp HHHHHHH-HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred HHHHHHH-HHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc
Confidence 9999999 6665 468999999999999999975 56789999999999999965577888888546899999999998
Q ss_pred CCCCh---HHHHHHHHHHHHHhc---CCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC-ChhhHHHH
Q 038250 271 EPICP---TATKASLVVVYRTIT---SASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS-SDYGRGDA 343 (444)
Q Consensus 271 ~~~~~---~~~~~a~~aL~~L~~---~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i 343 (444)
++.+. ++++.|+++|+||+. ..+ +++..++++|+++.|+++|.+++..+++.|+++|++|+. +++.+..+
T Consensus 225 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 301 (354)
T 3nmw_A 225 YRSQTNTLAIIESGGGILRNVSSLIATNE---DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301 (354)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 76322 589999999999996 232 489999999999999999999999999999999999995 56666666
Q ss_pred hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc
Q 038250 344 YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE 380 (444)
Q Consensus 344 ~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~ 380 (444)
.+.|+||.|++++.++++.+++.|+++|.+|+.+.+
T Consensus 302 -~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 302 -WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp -HHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred -HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 899999999999998899999999999999999755
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.96 E-value=1.2e-28 Score=253.45 Aligned_cols=286 Identities=10% Similarity=0.128 Sum_probs=238.4
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
.+.|+.|+..|..+ ++++.+.+|+++|.+++..+++++..+++.|+||.|+.+|.+. +.++++.|+++|.
T Consensus 99 ~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-------~~~v~e~A~~aL~ 168 (510)
T 3ul1_B 99 AGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALG 168 (510)
T ss_dssp TTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence 35678888888765 3678899999999999999999999999999999999999532 6889999999999
Q ss_pred hhcCCChhhhhhcccCCcHHHHHHHH-----------------------------------------------hcCCHHH
Q 038250 201 LLFPLAGEGLTYLGSASSMRCMVWFL-----------------------------------------------KSGDLSR 233 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL-----------------------------------------------~~~~~~~ 233 (444)
.+...++++|..+.+.|+++.|+.+| .+++.++
T Consensus 169 nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 248 (510)
T 3ul1_B 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 248 (510)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence 44444566666666666655555554 4455667
Q ss_pred HHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHH
Q 038250 234 RRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLE 313 (444)
Q Consensus 234 ~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~ 313 (444)
+..|+++|.+|+...++....+ ...|+++.|+.+|.++ ++.++..++++|.||+.+++ .++..+++.|+++.|+.
T Consensus 249 ~~~A~~aL~~L~~~~~~~~~~i-~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~---~~~~~i~~~g~l~~L~~ 323 (510)
T 3ul1_B 249 LADSCWAISYLTDGPNERIEMV-VKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTD---EQTQKVIDAGALAVFPS 323 (510)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHH-HTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTGGGGCC-
T ss_pred HHHHHHHHHHHhhchhhhHHHH-HhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCH---HHHHHHhhccchHHHHH
Confidence 7888899999965556666666 5679999999999998 79999999999999998765 57788899999999999
Q ss_pred HhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhh
Q 038250 314 MLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQV 393 (444)
Q Consensus 314 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 393 (444)
+|.+++..+++.|+++|.+|+.+...+...+.+.|+++.|+.++.+++..+++.|+++|.+++.. ++.+.+..+++.
T Consensus 324 LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~---~~~~~~~~L~~~ 400 (510)
T 3ul1_B 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG---GTVEQIVYLVHC 400 (510)
T ss_dssp CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc---CCHHHHHHHHHC
Confidence 99999999999999999999987766666668899999999999999999999999999999986 346777788899
Q ss_pred ChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 394 GAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 394 g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
|++++|+.+|.+. ++++...+...|..+-+.
T Consensus 401 g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 401 GIIEPLMNLLSAK-DTKIIQVILDAISNIFQA 431 (510)
T ss_dssp TCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 9999999999998 889999998866655443
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=1.4e-28 Score=260.59 Aligned_cols=285 Identities=14% Similarity=0.084 Sum_probs=232.6
Q ss_pred CCCChHHHHHHHHHHHhhcccC--ChhHHHHHHHHHHHHhccCcccchhHh-hcCchHHHHHHHHhhcccccccchHHHH
Q 038250 117 IPVSSVEVFEINCNITTACKSE--DQAGCRDLVAKIKKWTKESDRNKRCIV-DNGAVSVLAEAFETFSKTCLDENVSVLE 193 (444)
Q Consensus 117 ~~~~~~~i~~ll~~L~~~~~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~ 193 (444)
++...+.++.+++.+...+.++ |.+.+..|++.|..++.. +..|..++ +.|++|.|+.+|++. +..++.
T Consensus 368 ~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~-------d~~i~~ 439 (810)
T 3now_A 368 RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGG-------NQSCLY 439 (810)
T ss_dssp CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTT-------CGGGHH
T ss_pred cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCC-------ChHHHH
Confidence 4445556666666555544444 778999999999999976 45666666 589999999999642 578999
Q ss_pred HHHHHHHhhcCC-Ch-----------------------------hhh---hhcccCCcHHHHHHHHhcCCHHHHHHHHHH
Q 038250 194 EILSTLTLLFPL-AG-----------------------------EGL---TYLGSASSMRCMVWFLKSGDLSRRRNAVLV 240 (444)
Q Consensus 194 ~a~~~L~~~l~~-~~-----------------------------~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~ 240 (444)
.|+++|. |++. .+ .++ +.++++|++|.|+.+|+++++.+|++|+++
T Consensus 440 ~al~~L~-NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~a 518 (810)
T 3now_A 440 GVVTTFV-NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARV 518 (810)
T ss_dssp HHHHHHH-HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999 5554 32 122 567889999999999999999999999999
Q ss_pred HHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHH---HhcCcHHHHHHHhhc
Q 038250 241 LREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKF---VDMGLVSLLLEMLVD 317 (444)
Q Consensus 241 L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i---~~~g~v~~Lv~lL~~ 317 (444)
|.||+ .+++++..| ...|++|+|+.+|+++ ++..++.|+++|.+|+.+.+ ....+ ...|+|++|+++|.+
T Consensus 519 L~NLA-~d~~~r~~V-v~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~----p~~~~~~~~~~~aIppLv~LL~~ 591 (810)
T 3now_A 519 LNAVC-GLKELRGKV-VQEGGVKALLRMALEG-TEKGKRHATQALARIGITIN----PEVSFSGQRSLDVIRPLLNLLQQ 591 (810)
T ss_dssp HHHHH-TSHHHHHHH-HHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSC----HHHHTTTHHHHHTHHHHHHTTST
T ss_pred HHHHc-CCHHHHHHH-HHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCC----hhhhhcchhhhcHHHHHHHHhCC
Confidence 99995 678899999 5679999999999998 78999999999999998764 32222 124799999999985
Q ss_pred ccc-chHHHHHHHHHHhcCCh-hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHh-hC
Q 038250 318 AQR-SLCEKALSVLDGLCSSD-YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQ-VG 394 (444)
Q Consensus 318 ~~~-~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~-~g 394 (444)
+.. ..+..|+++|.||+..+ +.+..+ +++|+++.|+.+|.+.++.+++.|+++|+||+.+ ++.+..++. .|
T Consensus 592 ~~~~l~~~eAl~AL~NLa~~~d~~~~~I-i~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-----~~~~~~~v~~~g 665 (810)
T 3now_A 592 DCTALENFESLMALTNLASMNESVRQRI-IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-----EDVIKMFEGNND 665 (810)
T ss_dssp TSCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-----HHHHHHHHSSSS
T ss_pred CCcHHHHHHHHHHHHHHhcCCHHHHHHH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-----hHHHHHHHhccC
Confidence 533 44578999999999975 455566 8889999999999998999999999999999984 445666664 79
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 395 AFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 395 ~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
+++.|+.++.+. +..+++.|+++|.++..
T Consensus 666 ~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 666 RVKFLALLCEDE-DEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhC
Confidence 999999999998 89999999999999886
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=6e-28 Score=249.57 Aligned_cols=288 Identities=11% Similarity=0.132 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++.|+..|.+. +.+.+..|+++|.+++.+++.+|..+++.|++++|+.+|...... .....+++.++++|.
T Consensus 162 Gaip~Lv~LL~s~----~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~--~~~~~~~~~a~~~L~- 234 (529)
T 3tpo_A 162 GAIPAFISLLASP----HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLS--TLACGYLRNLTWTLS- 234 (529)
T ss_dssp THHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGG--GSCHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHcCC----CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchh--HhHHHHHHHHHHHHH-
Confidence 4566777766665 889999999999999999999999999999999999999532111 113457888999998
Q ss_pred hcCCChh-hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250 202 LFPLAGE-GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA 280 (444)
Q Consensus 202 ~l~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 280 (444)
+++.+.. ........|++|.|+.+|.+++++++..|+++|.+|+...++....+ ...|+++.|+.+|.++ ++.++..
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v-~~~g~i~~Lv~lL~~~-~~~v~~~ 312 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV-VKKGVVPQLVKLLGAT-ELPIVTP 312 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH-HTTTCHHHHHHHHTCS-CHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHH-HhccchHHHHHHhcCC-ChhHHHH
Confidence 5544443 33344457899999999999999999999999999976667777777 5679999999999988 8999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250 281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~ 360 (444)
++++|.||+.+++ .++..+++.|+++.|+.+|.+++..+++.|+++|++|+.+...+...+.+.|++|.|+.++.++
T Consensus 313 a~~aL~nl~~~~~---~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 389 (529)
T 3tpo_A 313 ALRAIGNIVTGTD---EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 389 (529)
T ss_dssp HHHHHHHHTTSCH---HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHccch---HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC
Confidence 9999999998765 5788889999999999999999999999999999999987777666668999999999999999
Q ss_pred ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+..++..|+++|.+++.+ ++.+....+++.|++++|+.+|.+. ++++...+...|..+-+.
T Consensus 390 ~~~v~~~A~~aL~nl~~~---~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTSG---GTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA 450 (529)
T ss_dssp CHHHHHHHHHHHHHHHHH---SCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC---CCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 3467777888999999999999998 889999988866665443
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=3.1e-27 Score=244.10 Aligned_cols=285 Identities=13% Similarity=0.069 Sum_probs=247.1
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCc-ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESD-RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL 199 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L 199 (444)
...++.++..|.+. +++.+..|+..|+.++.... .++..+++.|++|.|+.+|.+. . ++.++..|+++|
T Consensus 73 ~~~l~~lv~~L~s~----~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~--~----~~~v~~~A~~~L 142 (528)
T 4b8j_A 73 LESLPAMIGGVYSD----DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE--D----FPQLQFEAAWAL 142 (528)
T ss_dssp --CHHHHHHHHTSS----CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT--T----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC--C----CHHHHHHHHHHH
Confidence 34578888888665 88999999999999976554 6788899999999999999532 1 388999999999
Q ss_pred HhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250 200 TLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK 279 (444)
Q Consensus 200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 279 (444)
..+...+++++..+++.|+++.|+.+|.++++.+++.|+++|++|+...+.++..+ ...|++++|+.+|....++.++.
T Consensus 143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i-~~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 143 TNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV-LANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHH-HHTTCHHHHHHTCCTTCCHHHHH
T ss_pred HHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHH-HHCCcHHHHHHHHhcCCCHHHHH
Confidence 96666668899999999999999999999999999999999999977778888888 55799999999995544799999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250 280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR 359 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~ 359 (444)
.++++|.+|+.+.. ........|+++.|+.+|.+++..++..|+++|.+|+...+.+...+.+.|+++.|+.+|.+
T Consensus 222 ~a~~~L~~L~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 297 (528)
T 4b8j_A 222 NATWTLSNFCRGKP----QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 297 (528)
T ss_dssp HHHHHHHHHHCSSS----CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCC----CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence 99999999999865 45556678999999999999999999999999999998877776665889999999999998
Q ss_pred cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
.++.++..|+++|++|+.. +......+++.|+++.|+.+|.++.++.+++.|+++|..+..
T Consensus 298 ~~~~v~~~a~~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 298 PSPSVLIPALRTVGNIVTG----DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp SCHHHHHHHHHHHHHHTTS----CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHcC----CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 8999999999999999984 466777788999999999999977678999999998888874
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=5.1e-27 Score=217.92 Aligned_cols=243 Identities=17% Similarity=0.203 Sum_probs=216.1
Q ss_pred CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250 168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS 247 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~ 247 (444)
|+++.|+++|.+ + +++++..|+.+|..+...+++++..+.+.|+++.|+.+|++++.+++..|+++|.+|+..
T Consensus 2 ~~i~~L~~~L~~---~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLTS---T----DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTTC---S----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHcC---C----CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 689999999953 2 588999999999966666667999999999999999999999999999999999999666
Q ss_pred chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHH
Q 038250 248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKAL 327 (444)
Q Consensus 248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~ 327 (444)
+++++..+ ...|+++.|+.+|+++ ++.++..|+++|.+|+...+ .++..+++.|+++.|+++|.++++.++..++
T Consensus 75 ~~~~~~~~-~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~ 149 (252)
T 4hxt_A 75 PDEAIKAI-VDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPD---EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 149 (252)
T ss_dssp CHHHHHHH-HHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred ChHHHHHH-HHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 58899988 5579999999999988 79999999999999996543 4889999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCC
Q 038250 328 SVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGC 407 (444)
Q Consensus 328 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~ 407 (444)
++|.+|+...+.....+.+.|+++.|++++.+.++.++..|+++|.+|+.. ++.....+++.|+++.|+++++++
T Consensus 150 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~i~~L~~ll~~~- 224 (252)
T 4hxt_A 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----PTSAIKAIVDAGGVEVLQKLLTST- 224 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----BHHHHHHHHHTTHHHHHHHGGGCS-
T ss_pred HHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHCCC-
Confidence 999999986666544448899999999999988999999999999999984 466777788999999999999988
Q ss_pred ChHHHHHHHHHHHHHHhhcc
Q 038250 408 ADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 408 ~~~~k~~a~~ll~~l~~~~~ 427 (444)
++.+++.|.++|..+.....
T Consensus 225 ~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 225 DSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp CHHHHHHHHHHHHHHHHTCB
T ss_pred cHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999987664
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3.5e-27 Score=219.73 Aligned_cols=239 Identities=16% Similarity=0.221 Sum_probs=212.5
Q ss_pred CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 038250 168 GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSS 247 (444)
Q Consensus 168 G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~ 247 (444)
...+.++.+|.+. +++++..|+.+|..+++.+++++..+.+.|+++.|+.+|++++++++..|+++|.+|+..
T Consensus 12 ~~~~~~~~~L~s~-------~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 12 SELPQMTQQLNSD-------DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp CSHHHHHHHHHSS-------CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 4578999999642 588999999999757777778888999999999999999999999999999999999766
Q ss_pred chhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchh-HHHHhcCcHHHHHHHhhccccchHHHH
Q 038250 248 DHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPI-QKFVDMGLVSLLLEMLVDAQRSLCEKA 326 (444)
Q Consensus 248 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~~a 326 (444)
+++++..+ ...|+++.|+.+|+++ ++.+++.|+++|.+|+.+.+ ++ ..+++.|+++.|+++|.+++..+++.|
T Consensus 85 ~~~~~~~i-~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 158 (252)
T 4db8_A 85 GNEQIQAV-IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEA 158 (252)
T ss_dssp CHHHHHHH-HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred CHHHHHHH-HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCc----hHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 88899888 5579999999999998 89999999999999999876 66 888999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
+++|.+|+..++.....+.+.|+++.|++++.+.++.+++.|+++|.+|+.. +++....+++.|+++.|+.+++++
T Consensus 159 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 159 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC----CHHHHHHHHHCCcHHHHHHHhCCC
Confidence 9999999986655555548899999999999888999999999999999973 466777788999999999999998
Q ss_pred CChHHHHHHHHHHHHHHh
Q 038250 407 CADKTKEHVSELLKLLNP 424 (444)
Q Consensus 407 ~~~~~k~~a~~ll~~l~~ 424 (444)
++.+++.|+++|..+..
T Consensus 235 -~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 235 -NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp -SSHHHHTHHHHHHTTC-
T ss_pred -CHHHHHHHHHHHHHHhc
Confidence 88999999998887754
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=9.4e-27 Score=216.13 Aligned_cols=243 Identities=19% Similarity=0.210 Sum_probs=215.0
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.++.++..|.+. +.+.+..|++.|..++..++.++..+++.|+++.|+++|.+ + +.+++..|+.+|..+
T Consensus 3 ~i~~L~~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~----~~~v~~~a~~~L~~l 71 (252)
T 4hxt_A 3 DVEKLVKLLTST----DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS---T----DSEVQKEAARALANI 71 (252)
T ss_dssp HHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC---C----CHHHHHHHHHHHHHH
Confidence 467788888775 78899999999999999888899999999999999999953 2 588999999999944
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
...+++++..+.+.|+++.|+.+|++++++++..|+++|.+|+..+++++..+ ...|+++.|+++++++ ++.++..++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~~l~~~-~~~~~~~a~ 149 (252)
T 4hxt_A 72 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI-VDAGGVEVLVKLLTST-DSEVQKEAA 149 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHTTCS-CHHHHHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHCCCHHHHHHHHcCC-CHHHHHHHH
Confidence 44448999999999999999999999999999999999999965788888888 4579999999999988 799999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD 362 (444)
Q Consensus 283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 362 (444)
++|.+|+.+.+ .++..+++.|+++.|+++|.++++.++..|+++|.+|+.........+.+.|+++.|++++.+.++
T Consensus 150 ~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 150 RALANIASGPD---EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp HHHHHHTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred HHHHHHHcCCH---HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcH
Confidence 99999998764 366888999999999999999999999999999999998555555444889999999999998899
Q ss_pred hHHHHHHHHHHHHcccccc
Q 038250 363 LATEFAVSILWKLCKNEER 381 (444)
Q Consensus 363 ~~~~~a~~~L~~L~~~~~~ 381 (444)
.+++.|+++|.+|+...+.
T Consensus 227 ~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 9999999999999986553
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3.1e-27 Score=220.07 Aligned_cols=239 Identities=18% Similarity=0.228 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
...+.+++.|.+. |.+.+..|++.|+.+...++.++..+++.|+++.|+++|.+. ++.++..|+.+|..
T Consensus 12 ~~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~ 80 (252)
T 4db8_A 12 SELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSN 80 (252)
T ss_dssp CSHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence 3467788888886 888999999999877666778899999999999999999532 58899999999995
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhH-HHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKV-NVLLDIEGAIEPLFKLIKEPICPTATKA 280 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 280 (444)
+...+++++..+.+.|+++.|+.+|+++++++++.|+++|.+|+ .+++.+ ..+ ...|+++.|+++|+++ ++.++..
T Consensus 81 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~-~~~~~i~~L~~lL~~~-~~~v~~~ 157 (252)
T 4db8_A 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQAV-IDAGALPALVQLLSSP-NEQILQE 157 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCHHHHHHH-HHTTHHHHHHHGGGCS-CHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh-cCCchHHHHH-HHCCCHHHHHHHHhCC-CHHHHHH
Confidence 54457899999999999999999999999999999999999995 555555 666 5579999999999988 8999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250 281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~ 360 (444)
|+++|.+|+.+.+ .++..+++.|+++.|+++|.++++.+++.|+++|.+|+..++.....+.+.|+++.|++++.+.
T Consensus 158 a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 158 ALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp HHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHHHHHHHcCCh---HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC
Confidence 9999999998764 4777889999999999999999999999999999999965544444448899999999999988
Q ss_pred ChhHHHHHHHHHHHHcc
Q 038250 361 SDLATEFAVSILWKLCK 377 (444)
Q Consensus 361 ~~~~~~~a~~~L~~L~~ 377 (444)
++.+++.|+++|.+|+.
T Consensus 235 ~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 235 NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SSHHHHTHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999999986
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=3.3e-26 Score=236.38 Aligned_cols=283 Identities=14% Similarity=0.134 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++.++..|.+. +++..+..|+++|.+++..++.++..+++.|+++.|+.+|.+ + +..+++.|+++|..
T Consensus 117 g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---~----~~~v~~~a~~aL~~ 186 (528)
T 4b8j_A 117 GVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS---S----SDDVREQAVWALGN 186 (528)
T ss_dssp TCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC---C----CHHHHHHHHHHHHH
Confidence 4467788888765 138899999999999999888999999999999999999953 2 58899999999995
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFL-KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA 280 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 280 (444)
++..++.++..+.+.|+++.|+.+| .+.+..++..|+++|.+|+...+.....+ ..|+++.|+.+|.++ ++.++..
T Consensus 187 l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~lL~~~-~~~v~~~ 263 (528)
T 4b8j_A 187 VAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ--TRPALPALARLIHSN-DEEVLTD 263 (528)
T ss_dssp HHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH--HTTHHHHHHHHTTCC-CHHHHHH
T ss_pred HhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHHHHHCCC-CHHHHHH
Confidence 5555677888999999999999999 56689999999999999965544333333 369999999999988 8999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc
Q 038250 281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~ 360 (444)
|+++|.+|+.+.. .....+++.|+++.|+.+|.+++..++..|+++|.+|+...+.....+.+.|+++.|+.+|.+.
T Consensus 264 a~~aL~~l~~~~~---~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 264 ACWALSYLSDGTN---DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHHHHHHHTSSCH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCH---HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 9999999998764 2456778999999999999999999999999999999986655555558899999999999988
Q ss_pred -ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 361 -SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 361 -~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
++.++..|+++|.+|+.. +......+++.|+++.|+.+|.++ ++.+++.|+++|..+...
T Consensus 341 ~~~~v~~~A~~~L~nl~~~----~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 341 LKKSIKKEACWTISNITAG----NKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTS----CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHCC----CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 899999999999999983 466777788999999999999998 899999999988888765
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=1.8e-25 Score=231.00 Aligned_cols=282 Identities=13% Similarity=0.107 Sum_probs=241.5
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc-CcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKE-SDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
.++.++..|.+. +++.+..|+..|+.+... ...++..+++.|++|.|+.+|.+. . ++.++..|+++|..
T Consensus 88 ~i~~lv~~L~s~----~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~--~----~~~v~~~A~~~L~~ 157 (530)
T 1wa5_B 88 ELPQMTQQLNSD----DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN--Q----PEMLQLEAAWALTN 157 (530)
T ss_dssp CHHHHHHHHSCS----SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT--S----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC--C----CHHHHHHHHHHHHH
Confidence 467777777664 888999999999999754 345677889999999999999531 1 58899999999996
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a 281 (444)
+...+++++..+++.|+++.|+.+|+++++++++.|+++|.+|+..+++++..+ ...|++++|+.++.+. ++.++..|
T Consensus 158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~-~~~v~~~a 235 (530)
T 1wa5_B 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV-LQCNAMEPILGLFNSN-KPSLIRTA 235 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHGGGSC-CHHHHHHH
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHH-HHcCcHHHHHHHhccC-CHHHHHHH
Confidence 666667888888899999999999999999999999999999976667888888 4579999999999986 79999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS 361 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~ 361 (444)
+++|.+|+.+.. .........|+++.|+.+|.+++..++..|+++|.+|+.........+.+.|+++.|+.+|.+.+
T Consensus 236 ~~~L~~L~~~~~---~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~ 312 (530)
T 1wa5_B 236 TWTLSNLCRGKK---PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312 (530)
T ss_dssp HHHHHHHHCCSS---SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHhCCCC---CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC
Confidence 999999998862 15556677899999999999989999999999999999765443333378899999999998888
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
..++..|+++|.+|+.. ++.....+++.|+++.|+.+|+++ +..+++.|.++|..+..
T Consensus 313 ~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 313 TLVQTPALRAVGNIVTG----NDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHcC----CHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 99999999999999984 455666777899999999999988 89999999998888874
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=1.8e-25 Score=231.09 Aligned_cols=283 Identities=14% Similarity=0.118 Sum_probs=241.5
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.++.++..|.+. .+...+..|+++|.+++..++.++..+++.|+++.|+.+|.+. +..+++.|+++|..+
T Consensus 131 ~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~vr~~A~~aL~~l 200 (530)
T 1wa5_B 131 VVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-------SVEVKEQAIWALGNV 200 (530)
T ss_dssp CHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 456666666553 2678999999999999998888899999999999999999643 588999999999955
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
+..+++++..+.+.|+++.|+.+|.+.+..++..|+++|.+|+.......... ...|+++.|+.+|.++ ++.++..|+
T Consensus 201 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~l~~L~~lL~~~-d~~v~~~a~ 278 (530)
T 1wa5_B 201 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS-VVSQALPTLAKLIYSM-DTETLVDAC 278 (530)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH-HHGGGHHHHHHHTTCC-CHHHHHHHH
T ss_pred hCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH-HHHhHHHHHHHHHcCC-CHHHHHHHH
Confidence 55567888888889999999999999999999999999999965542333333 2369999999999988 799999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD 362 (444)
Q Consensus 283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 362 (444)
++|.+|+.+.. .....+++.|+++.|+.+|.+.+..++..|+++|.+|+...+.....+.+.|+++.|+.+|.+.+.
T Consensus 279 ~~L~~L~~~~~---~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 355 (530)
T 1wa5_B 279 WAISYLSDGPQ---EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355 (530)
T ss_dssp HHHHHHHSSCH---HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH
T ss_pred HHHHHHhCCCH---HHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH
Confidence 99999998754 367788899999999999999899999999999999998655555544788999999999988888
Q ss_pred hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 363 LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
.+++.|+++|.+|+.. +.+....+++.|+++.|+.+|..+ ++.+++.|+++|..+...
T Consensus 356 ~vr~~A~~aL~~l~~~----~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 356 NIKKEACWTISNITAG----NTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHHHHTTS----CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 9999999999999984 356677777899999999999988 899999999988888654
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=5e-25 Score=222.19 Aligned_cols=283 Identities=13% Similarity=0.114 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++.++..|.+. .+...+..|++.|..++..++.+...+++.|+++.|+.+|.+ + ++.+++.|+.+|..
T Consensus 64 ~~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~----~~~vr~~a~~~L~~ 133 (450)
T 2jdq_A 64 GVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS---E----FEDVQEQAVWALGN 133 (450)
T ss_dssp THHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC---C----CHHHHHHHHHHHHH
Confidence 4566777777654 267899999999999998877788888999999999999953 2 68999999999995
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATK 279 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 279 (444)
+...+++++..+.+.|+++.|+.+|.+ .+..++..|+++|.+|+... +..+..+ . .|++|.|+.++.++ ++.++.
T Consensus 134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~~~l~~L~~~l~~~-~~~v~~ 210 (450)
T 2jdq_A 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-V-SPCLNVLSWLLFVS-DTDVLA 210 (450)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-T-GGGHHHHHHHTTCC-CHHHHH
T ss_pred HccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-H-HHHHHHHHHHHccC-CHHHHH
Confidence 555566788888899999999999996 68999999999999996544 4444444 3 69999999999988 799999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250 280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR 359 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~ 359 (444)
.++++|.+|+.+.. .++..+++.|+++.|+++|.+.+..+++.|+++|.+|+...+...+.+.+.|+++.|+.++.+
T Consensus 211 ~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 211 DACWALSYLSDGPN---DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp HHHHHHHHHTSSSH---HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCc---HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 99999999998753 367788899999999999998899999999999999998776666555888999999999988
Q ss_pred cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 360 VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 360 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
.+..+++.|+++|.+|+.. +.+....+++.|+++.|+.+|.++ ++.+|+.|+++|..+...
T Consensus 288 ~~~~vr~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 288 PKESIKKEACWTISNITAG----NRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp SSHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 8889999999999999983 456677777899999999999988 899999999988888653
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=2e-24 Score=217.70 Aligned_cols=283 Identities=13% Similarity=0.108 Sum_probs=236.7
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.++.++..|.+ +++..+..|++.|.+++..++.++..+.+.|+++.|+.+|.+ +. +..++..|+++|..+
T Consensus 108 ~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~----~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 108 AVPIFIELLSS----EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QN----RLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CC----CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CC----CHHHHHHHHHHHHHH
Confidence 45556666655 488999999999999999888899999999999999999952 12 588999999999944
Q ss_pred cCCC-hhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250 203 FPLA-GEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281 (444)
Q Consensus 203 l~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a 281 (444)
+... +..+..+. .++++.|+.+|++++.+++..|+++|.+|+...++.+..+ ...|+++.|+.+|.++ ++.++..|
T Consensus 178 ~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ll~~~-~~~v~~~a 254 (450)
T 2jdq_A 178 CRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV-IDAGVCRRLVELLMHN-DYKVVSPA 254 (450)
T ss_dssp HCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH-HHTTTHHHHHHHTTCS-CHHHHHHH
T ss_pred hCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH-HHcCcHHHHHHHHCCC-chhHHHHH
Confidence 4443 33333333 8999999999999999999999999999976566777777 4579999999999987 79999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hhhHHHHhcCCCChHHHHHHHhhc
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DYGRGDAYNNSLIFPVIVKKILRV 360 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~ll~~~ 360 (444)
+++|.+|+.+.+ .....+++.|+++.|+++|.+++..+++.|+++|.+|+.. ++....+ .+.|+++.|+.++.+.
T Consensus 255 ~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 255 LRAVGNIVTGDD---IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV-IDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHTTSCH---HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHHHHS
T ss_pred HHHHHHHhhCCh---HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHCCCHHHHHHHHhcC
Confidence 999999998865 3556678899999999999998999999999999999974 4444555 7789999999999988
Q ss_pred ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 361 SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 361 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
++.++..|+++|.+++.. ++++....+++.|+++.|+.++..+ ++.+++.|...|..+....
T Consensus 331 ~~~v~~~a~~~L~~l~~~---~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSG---GSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLG 392 (450)
T ss_dssp CHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC---CCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence 999999999999999974 1355667777899999999999988 8999999999777776543
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=1.5e-24 Score=223.44 Aligned_cols=287 Identities=15% Similarity=0.099 Sum_probs=236.2
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
.+.++.+++.|.++ .+.+.+..|+..|++++.. +.++..+++.|++|.|+++|++ + ++.++..|+.+|.
T Consensus 58 ~~~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~---~----~~~v~~~a~~~L~ 126 (529)
T 1jdh_A 58 PQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS---P----VDSVLFYAITTLH 126 (529)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTC---S----CHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcC---C----CHHHHHHHHHHHH
Confidence 35677888888764 2788999999999999876 4599999999999999999953 2 5889999999999
Q ss_pred hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250 201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA 280 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 280 (444)
.++..+++.+..+.+.|+++.|+.+|++++.+++..++.+|.+|+..+++++..+ ...|+++.|+++|+++.....+..
T Consensus 127 ~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i-~~~~~i~~L~~ll~~~~~~~~~~~ 205 (529)
T 1jdh_A 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWT 205 (529)
T ss_dssp HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH-HHCCCHHHHHHHHHhCChHHHHHH
Confidence 5444456778888899999999999999999999999999999987778899988 456999999999998755677778
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------------------------------------ccccc
Q 038250 281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------------------------------------DAQRS 321 (444)
Q Consensus 281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------------------------------------~~~~~ 321 (444)
++.+|.+|+.+.+ ++..+++.|+++.|++++. +.++.
T Consensus 206 a~~~L~~l~~~~~----~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~ 281 (529)
T 1jdh_A 206 TSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 281 (529)
T ss_dssp HHHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHH
Confidence 8999999998776 8888888887777665554 34566
Q ss_pred hHHHHHHHHHHhcCCh-hhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250 322 LCEKALSVLDGLCSSD-YGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398 (444)
Q Consensus 322 ~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~ 398 (444)
+++.|+++|.+|+..+ +.+..+ .+.|+++.|++++... ++.+++.|+++|++|+...+. ++..+..+++.|+++.
T Consensus 282 v~~~a~~~L~~L~~~~~~~~~~~-~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~i~~~~~i~~ 359 (529)
T 1jdh_A 282 VVTCAAGILSNLTCNNYKNKMMV-CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPV 359 (529)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHH-HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH-HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHcCChhH
Confidence 7778888888888754 455555 7889999999999864 368899999999999986542 2445667779999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 399 LLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
|+.+|+++.++.+++.|.+++..+...
T Consensus 360 L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 360 VVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhccccchHHHHHHHHHHHHHhcC
Confidence 999999884568999999988888754
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.93 E-value=2.4e-24 Score=227.82 Aligned_cols=288 Identities=15% Similarity=0.098 Sum_probs=237.4
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
.+.++.+++.|.+. .+.+.+..|+..|+.++... .++..+.+.|+++.|+.+|.+ + ++.++..|+.+|.
T Consensus 55 ~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~---~----~~~v~~~A~~aL~ 123 (644)
T 2z6h_A 55 PQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGS---P----VDSVLFYAITTLH 123 (644)
T ss_dssp HHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHHHHHTTC---S----SHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHHHHHHhC---C----CHHHHHHHHHHHH
Confidence 35677888888764 37889999999999999774 599999999999999999953 2 5889999999999
Q ss_pred hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250 201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA 280 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 280 (444)
.++..+++.+..+.+.|+++.|+.+|++++..++..++.+|.+|+..+++++..+ ...|+++.|+++|++......+..
T Consensus 124 nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i-~~~g~v~~Lv~lL~~~~~~~~~~~ 202 (644)
T 2z6h_A 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWT 202 (644)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH-HHcCChHHHHHHHHcCChHHHHHH
Confidence 5555556778888899999999999999999888889999999976788899988 457999999999998855778899
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------------------------------------ccccc
Q 038250 281 SLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------------------------------------DAQRS 321 (444)
Q Consensus 281 a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------------------------------------~~~~~ 321 (444)
++.+|++|+.+.. ++..+++.|+++.|++++. +.+..
T Consensus 203 a~~~L~nLs~~~~----~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~ 278 (644)
T 2z6h_A 203 TSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 278 (644)
T ss_dssp HHHHHHHHTTCTT----HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHH
Confidence 9999999998776 8999999998887776554 34566
Q ss_pred hHHHHHHHHHHhcCCh-hhHHHHhcCCCChHHHHHHHhhcC--hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250 322 LCEKALSVLDGLCSSD-YGRGDAYNNSLIFPVIVKKILRVS--DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398 (444)
Q Consensus 322 ~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~ 398 (444)
+++.|+++|.+|+..+ +.+..+ .+.|+++.|+.++...+ +.+++.|+++|.+|+...+. ++.....+++.|+++.
T Consensus 279 v~~~a~~aL~~L~~~~~~~~~~v-~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~-~~~~q~~v~~~~~l~~ 356 (644)
T 2z6h_A 279 VVTCAAGILSNLTCNNYKNKMMV-CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPV 356 (644)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH-HHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHccChHH
Confidence 7777888888887754 445555 78899999999998743 68999999999999975442 2334455678999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 399 LLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
|+.+|++..++.+++.|+++|..+..+.
T Consensus 357 L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 357 VVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 9999998845789999999998887543
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=203.45 Aligned_cols=199 Identities=14% Similarity=0.102 Sum_probs=168.2
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD 248 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~ 248 (444)
.+|.||++|.+. + .+.+++..|++.|..++..++++|..|.+.|+||.||++|++++.++|+.|+++|+||+..+
T Consensus 9 ~i~~lV~lL~s~--~---~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEAD--H---MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCSS--C---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCC--C---chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 589999999532 1 12388889999998445568899999999999999999999999999999999999997667
Q ss_pred hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---c--------
Q 038250 249 HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---D-------- 317 (444)
Q Consensus 249 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---~-------- 317 (444)
++++..| ...|+||+||++|++..+.++++.|+++|+||+..++ ++..+++ +++++|++++. .
T Consensus 84 ~~nk~~I-~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~----~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 84 NDNKLEV-AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK----LKNLMIT-EALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp HHHHHHH-HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG----GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCC
T ss_pred HHHHHHH-HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh----hHHHHHh-ccHHHHHHHHhccccCCcccccc
Confidence 8999999 5579999999999853378999999999999999876 8998887 47999998763 1
Q ss_pred -----cccchHHHHHHHHHHhcC-ChhhHHHHhcCCCChHHHHHHHhhc------ChhHHHHHHHHHHHHccc
Q 038250 318 -----AQRSLCEKALSVLDGLCS-SDYGRGDAYNNSLIFPVIVKKILRV------SDLATEFAVSILWKLCKN 378 (444)
Q Consensus 318 -----~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~a~~~L~~L~~~ 378 (444)
.+..++++|..+|+||+. ++++|..+....|+|+.||.+++.+ +...+|+|+.+|.||+..
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 145789999999999997 5688888844457899999999863 557889999999999974
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=8.7e-24 Score=217.65 Aligned_cols=283 Identities=14% Similarity=0.096 Sum_probs=233.3
Q ss_pred ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHH
Q 038250 120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILST 198 (444)
Q Consensus 120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~ 198 (444)
+.+.++.++..|.+. ++..+..|+..|.+++.+++ ++..+.+ .|+++.|+++|.+. . +.+++..|+.+
T Consensus 15 ~~~~i~~Lv~lL~~~----~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~--~----~~~~~~~a~~~ 83 (529)
T 1jdh_A 15 ATRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT--N----DVETARCTAGT 83 (529)
T ss_dssp --CHHHHHHHHHTCS----CHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHC--C----CHHHHHHHHHH
T ss_pred hHhhHHHHHHHhCCC----CHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcC--C----CHHHHHHHHHH
Confidence 345678888877754 88999999999999997654 6666665 59999999999632 1 57899999999
Q ss_pred HHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250 199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT 278 (444)
Q Consensus 199 L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 278 (444)
|. .++.+++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+++.+..+ ...|++|.|+++|+++ ++.++
T Consensus 84 L~-~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~ll~~~-~~~~~ 160 (529)
T 1jdh_A 84 LH-NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT-NVKFL 160 (529)
T ss_dssp HH-HHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH-HHHTHHHHHHHGGGCC-CHHHH
T ss_pred HH-HHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHH-HHcCCHHHHHHHHhcC-CHHHH
Confidence 99 788888899999999999999999999999999999999999977667778888 5579999999999988 78999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc-cchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH
Q 038250 279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ-RSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI 357 (444)
Q Consensus 279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll 357 (444)
..++.+|.+++..++ +++..+++.|+++.|+++|.+++ ...++.++.+|.+|+.+++++..+ .+.|+++.|++++
T Consensus 161 ~~~~~~L~~la~~~~---~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~~~~L~~ll 236 (529)
T 1jdh_A 161 AITTDCLQILAYGNQ---ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI-VEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH-HHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCH---HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHH-HHCCCHHHHHHHH
Confidence 999999999998653 58999999999999999998764 456778899999999988888877 6667776666554
Q ss_pred h---------------------------------------hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250 358 L---------------------------------------RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398 (444)
Q Consensus 358 ~---------------------------------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~ 398 (444)
. +.++.+++.|+++|++|+.. +.+.+..+.+.|+++.
T Consensus 237 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~----~~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 237 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN----NYKNKMMVCQVGGIEA 312 (529)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT----CHHHHHHHHHTTHHHH
T ss_pred hCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC----CHHHHHHHHHcCChHH
Confidence 3 34556677778888888773 3556777779999999
Q ss_pred HHHHHhcCC-ChHHHHHHHHHHHHHHh
Q 038250 399 LLLLLQVGC-ADKTKEHVSELLKLLNP 424 (444)
Q Consensus 399 Ll~ll~~~~-~~~~k~~a~~ll~~l~~ 424 (444)
|+++|.... .+.+++.|..+|..+..
T Consensus 313 L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 313 LVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 999998742 37899999998888864
No 29
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=7.2e-25 Score=200.01 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhhcccCCh--hHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 123 EVFEINCNITTACKSEDQ--AGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~--~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
.++.++..|.+. |. +.+..|+..|+.++..++.+|..+++.|+||+||++|++. +.++|+.|+++|.
T Consensus 9 ~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-------~~~vq~~Aa~aL~ 77 (233)
T 3tt9_A 9 TLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-------NEDVQRAVCGALR 77 (233)
T ss_dssp CHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-------CHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence 477788888775 65 7888999999999999899999999999999999999642 5889999999999
Q ss_pred hhcCCChhhhhhcccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc---CC----
Q 038250 201 LLFPLAGEGLTYLGSASSMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK---EP---- 272 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~---~~---- 272 (444)
.+...+++||..|+++|+||.|+++|++ ++.+++++|+.+|++| +..+++|..| .. ++||+|++++. ++
T Consensus 78 nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL-S~~~~~k~~i-~~-~~i~~Lv~ll~~p~sG~~~~ 154 (233)
T 3tt9_A 78 NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL-SSNDKLKNLM-IT-EALLTLTENIIIPFSGWPEG 154 (233)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSGGGHHHH-HH-HHHHHHCCCCCHHHHCCCGG
T ss_pred HHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcChhhHHHH-Hh-ccHHHHHHHHhccccCCccc
Confidence 4444478999999999999999999984 6899999999999999 6778899998 43 67999998763 11
Q ss_pred --------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhc-CcHHHHHHHhhcc------ccchHHHHHHHHHHhcCC
Q 038250 273 --------ICPTATKASLVVVYRTITSASATEKPIQKFVDM-GLVSLLLEMLVDA------QRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 273 --------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~-g~v~~Lv~lL~~~------~~~~~~~a~~~L~~L~~~ 336 (444)
.++.++++|+++|+||+..++ ++|+.|.+. |+|+.|+.+++.+ +...+|+|+.+|+||+..
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~---~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAGA---DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSCH---HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 256899999999999998663 489999985 7789999999853 567899999999999974
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=6.6e-24 Score=191.99 Aligned_cols=200 Identities=20% Similarity=0.261 Sum_probs=177.4
Q ss_pred cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250 215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 215 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 294 (444)
..|..+.|+.+|++++++++..|+++|.+|+..+++.+..+ ...|+++.|+.+|+++ ++.++..|+++|.+|+.+++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~- 86 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAV-IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN- 86 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH-HHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCc-
Confidence 36889999999999999999999999999976788888888 5579999999999998 89999999999999997654
Q ss_pred CCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH
Q 038250 295 TEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK 374 (444)
Q Consensus 295 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~ 374 (444)
.++..+++.|+++.|+++|.+++..+++.|+++|.+|+.+.+.....+.+.|+++.|++++.+.+..+++.|+++|.+
T Consensus 87 --~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 87 --EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp --HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999997655554444889999999999998899999999999999
Q ss_pred HccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 375 LCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 375 L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
|+.. +++....+++.|+++.|+.++.++ ++.+++.|.++|..++.
T Consensus 165 l~~~----~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASG----GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTS----CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHcC----CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 9984 355677778999999999999988 99999999999988864
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.3e-23 Score=222.24 Aligned_cols=283 Identities=14% Similarity=0.099 Sum_probs=234.6
Q ss_pred ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc-CchHHHHHHHHhhcccccccchHHHHHHHHH
Q 038250 120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN-GAVSVLAEAFETFSKTCLDENVSVLEEILST 198 (444)
Q Consensus 120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~ 198 (444)
+.+.++.|+..|.+. +...+..|+..|.+++.+.+ ++..+... |+++.|+++|.+. . +.+++..|+.+
T Consensus 12 ~~g~i~~Lv~lL~~~----~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~--~----~~~~~~~A~~~ 80 (644)
T 2z6h_A 12 ATRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT--N----DVETARCTAGT 80 (644)
T ss_dssp CTTTHHHHHHHHTCS----CHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSC--C----CHHHHHHHHHH
T ss_pred hhchHHHHHHHHcCC----CHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcC--C----CHHHHHHHHHH
Confidence 345688888888754 88999999999999998754 67777654 9999999999531 1 58899999999
Q ss_pred HHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250 199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT 278 (444)
Q Consensus 199 L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 278 (444)
|. +++.+++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+...+..+..+ ...|+++.|+.+|+++ ++..+
T Consensus 81 L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v-~~~g~i~~Lv~lL~~~-~~~~~ 157 (644)
T 2z6h_A 81 LH-NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT-NVKFL 157 (644)
T ss_dssp HH-HHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHH-HHTTHHHHHHHGGGCC-CHHHH
T ss_pred HH-HHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHH-HHCCChHHHHHHHCcC-CHHHH
Confidence 99 788888899999999999999999999999999999999999977766777777 4579999999999998 78888
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc-cchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH
Q 038250 279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ-RSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI 357 (444)
Q Consensus 279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll 357 (444)
..++.+|.+|+...+ +++..+++.|+++.|+++|.+.+ ..+++.++.+|.+|+.+++++..+ .+.|+++.|++++
T Consensus 158 ~~a~~~L~~La~~~~---~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l-~~~g~l~~L~~ll 233 (644)
T 2z6h_A 158 AITTDCLQILAYGNQ---ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI-VEAGGMQALGLHL 233 (644)
T ss_dssp HHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHH-HHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCc---HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHH-HHCCCHHHHHHHH
Confidence 889999999997543 48999999999999999998664 567899999999999999888888 6778877776655
Q ss_pred hh---------------------------------------cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250 358 LR---------------------------------------VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398 (444)
Q Consensus 358 ~~---------------------------------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~ 398 (444)
.. .+..+++.|+++|.+|+.. +.+.+..+++.|+++.
T Consensus 234 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~----~~~~~~~v~~~g~v~~ 309 (644)
T 2z6h_A 234 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN----NYKNKMMVCQVGGIEA 309 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCCHHH
Confidence 44 3455566666667776663 2456667778999999
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHHHh
Q 038250 399 LLLLLQVGCA-DKTKEHVSELLKLLNP 424 (444)
Q Consensus 399 Ll~ll~~~~~-~~~k~~a~~ll~~l~~ 424 (444)
|+.+|....+ +.+++.|.++|..+..
T Consensus 310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 310 LVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 9999987533 7999999998888863
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1.1e-23 Score=190.55 Aligned_cols=199 Identities=16% Similarity=0.228 Sum_probs=175.9
Q ss_pred hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038250 166 DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIV 245 (444)
Q Consensus 166 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~ 245 (444)
..|+.+.|+.+|.+ + +.+++..|+.+|..+...+++++..+.+.|+++.|+.+|+++++++++.|+++|.+|+
T Consensus 10 ~~~~~~~l~~LL~s---~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 10 HGSELPQMVQQLNS---P----DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp ---CHHHHHHHTTC---S----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHhcC---C----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45788999999953 2 6899999999999555578889999999999999999999999999999999999997
Q ss_pred hcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHH
Q 038250 246 SSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEK 325 (444)
Q Consensus 246 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 325 (444)
..+++++..+ ...|+++.|+.+|+++ ++.+++.|+++|.||+.+.+ .++..+++.|+++.|+++|.+++..+++.
T Consensus 83 ~~~~~~~~~i-~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 157 (210)
T 4db6_A 83 SGGNEQIQAV-IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQE 157 (210)
T ss_dssp TSCHHHHHHH-HHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred cCCcHHHHHH-HHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCH---HHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 6788888888 5579999999999998 89999999999999998764 46778899999999999999999999999
Q ss_pred HHHHHHHhcCC-hhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 326 ALSVLDGLCSS-DYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 326 a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
|+++|.+|+.. ++.+..+ .+.|+++.|++++.+.++.+++.|+++|.+|+.
T Consensus 158 a~~aL~~l~~~~~~~~~~~-~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 158 ALWALSNIASGGNEQKQAV-KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTSCHHHHHHH-HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCcHHHHHH-HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999999997 5555555 889999999999998899999999999999986
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=1.3e-22 Score=218.52 Aligned_cols=287 Identities=15% Similarity=0.103 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++.|+..|.+. .+.+.+..|+.+|++++.. +.++..+.+.|+|+.|+.+|++. ++.++..|+.+|..
T Consensus 192 ~~i~~Lv~~L~~~---~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-------~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 192 QMVSAIVRTMQNT---NDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-------VDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence 4456666666554 3788999999999999876 56789999999999999999532 58899999999995
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a 281 (444)
++..+++.+..+.+.|+++.|+.+|++++..++..++.+|.+|+..+++++..+ ...|+++.|+.+|+++........+
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i-~~~~~i~~Lv~lL~~~~~~~~~~~a 339 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWTT 339 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH-HTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH-HHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 555556778888899999999999999999999999999999976778899988 4569999999999988555667788
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------------------------------------ccccch
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------------------------------------DAQRSL 322 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------------------------------------~~~~~~ 322 (444)
+.+|.+|+.... ++..+++.|+++.|+.+|. +.+..+
T Consensus 340 ~~aL~~Ls~~~~----~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v 415 (780)
T 2z6g_A 340 SRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 415 (780)
T ss_dssp HHHHHHHHTSTT----HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhhcChH----HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHH
Confidence 999999998766 8888888887777666553 445667
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-C-hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHH
Q 038250 323 CEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV-S-DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLL 400 (444)
Q Consensus 323 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~-~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll 400 (444)
++.|+++|.+|+..+......+.+.|+++.|+++|... + +.+++.|+++|.+|+...+. +......++..|+++.|+
T Consensus 416 r~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~-~~~~~~~v~~~~~l~~L~ 494 (780)
T 2z6g_A 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD-AEMAQNAVRLHYGLPVVV 494 (780)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTT-HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHcCCHHHHH
Confidence 78888888888876544344448899999999999874 3 38999999999999975432 122344566899999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 401 LLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 401 ~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
.+|.+...+.+++.|+++|..+...
T Consensus 495 ~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 495 KLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp HTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHhcCCChHHHHHHHHHHHHHHhcC
Confidence 9999884569999999999888754
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.90 E-value=3.9e-22 Score=214.83 Aligned_cols=275 Identities=15% Similarity=0.164 Sum_probs=227.1
Q ss_pred HHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhh
Q 038250 130 NITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEG 209 (444)
Q Consensus 130 ~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~ 209 (444)
.|...+.+++...+..|++.|.+++..... .....|+++.|+++|.+ . +..+++.|+.+|..+...++++
T Consensus 364 ~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~---~----d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 364 ALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS---D----DINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTC---S----CHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcC---C----CHHHHHHHHHHHHHHHhCCHHH
Confidence 333333345778899999999999976532 22345789999999953 2 6889999999999555556788
Q ss_pred hhhcccCCcHHHHHHHHhc-CC-HHHHHHHHHHHHHHHhcchh---hHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 210 LTYLGSASSMRCMVWFLKS-GD-LSRRRNAVLVLREIVSSDHR---KVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 210 ~~~i~~~g~i~~Lv~lL~~-~~-~~~~~~A~~~L~~L~s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
+..+.+.|+++.|+.+|.. ++ ..+++.|+++|++|+..+++ .+..+ ...|+++.|+.+|.++..+.+++.|+++
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v-~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV-RLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH-HHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH-HHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999999999999999976 33 48999999999999654443 34566 4579999999999988445899999999
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccc----------------------cchHHHHHHHHHHhcCChhhHHH
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQ----------------------RSLCEKALSVLDGLCSSDYGRGD 342 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~----------------------~~~~~~a~~~L~~L~~~~~~~~~ 342 (444)
|.||+.+.. ++..+.+.|+++.|+++|.+++ +++++.++.+|.+|+.+.+++..
T Consensus 513 L~nLa~~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~ 588 (780)
T 2z6g_A 513 IRNLALCPA----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588 (780)
T ss_dssp HHHHHSSHH----HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHhcCHH----HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHH
Confidence 999998876 8888999999999999997543 34678899999999998888877
Q ss_pred HhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 343 AYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 343 i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
+ .+.|+|+.|++++.+.++.++..|+.+|.+|+.. .+....+.+.|+++.|+.++.+. ++.+++.|+++|..+
T Consensus 589 l-~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-----~~~~~~i~~~g~i~~L~~Ll~~~-~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 589 I-RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-----KEAAEAIEAEGATAPLTELLHSR-NEGVATYAAAVLFRM 661 (780)
T ss_dssp H-HHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-----HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred H-HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 7 7889999999999988999999999999999863 55666677999999999999988 999999999988888
Q ss_pred Hhhc
Q 038250 423 NPHR 426 (444)
Q Consensus 423 ~~~~ 426 (444)
....
T Consensus 662 ~~~~ 665 (780)
T 2z6g_A 662 SEDK 665 (780)
T ss_dssp HTTS
T ss_pred HcCC
Confidence 7644
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=3.1e-22 Score=190.19 Aligned_cols=224 Identities=16% Similarity=0.141 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250 189 VSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ 267 (444)
.+-+..|+..|. .+..+.++...+.+.|+++.|+. +|+++++.+++.|+++|++++..++..+..+ ...|++|+|+.
T Consensus 54 ~e~k~~Al~~L~-~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~v-v~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLA-DLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV-LGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH-HHCCCHHHHHH
Confidence 456788899998 66667788888899999999999 9999999999999999999988888888888 55799999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh-hhHHHHhcC
Q 038250 268 LIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD-YGRGDAYNN 346 (444)
Q Consensus 268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~ 346 (444)
+|+++.++.+++.|+|+|.||+.+.. .....++++|+++.|+.+|.+++..++..|+++|.+|+..+ +.+..+ ++
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v-v~ 207 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQE---AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL-CS 207 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH-HH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH-HH
Confidence 99964368999999999999998764 35678899999999999999999999999999999998754 445555 89
Q ss_pred CCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhh-ChHHH----HHHHHhcCC-ChHHHHHHHHHHH
Q 038250 347 SLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQV-GAFQK----LLLLLQVGC-ADKTKEHVSELLK 420 (444)
Q Consensus 347 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~-g~l~~----Ll~ll~~~~-~~~~k~~a~~ll~ 420 (444)
.|+++.|+.+|.+.+..+++.|+.+|.+|+.. ........... ..+.. -++-++... .....++|..++.
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~----~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD----FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT----CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC----ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 99999999999988999999999999999984 23333332221 11222 233444331 3566666666555
Q ss_pred HH
Q 038250 421 LL 422 (444)
Q Consensus 421 ~l 422 (444)
.+
T Consensus 284 ~~ 285 (296)
T 1xqr_A 284 TC 285 (296)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.2e-21 Score=203.98 Aligned_cols=251 Identities=13% Similarity=0.119 Sum_probs=202.3
Q ss_pred cchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHH---HHHH
Q 038250 160 NKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLS---RRRN 236 (444)
Q Consensus 160 ~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~ 236 (444)
++..+.++|+||.|+.++++. ++.+++.|+++|. +++.++++|..+++.|+++.|+.+|.+++.. .++.
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~-------s~~~re~A~~aL~-nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNL-------SPNCKQQVVRIIY-NITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGS-------CHHHHHHHHHHHH-HHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCC-------CHHHHHHHHHHHH-HHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence 567888999999999999642 5889999999999 8889999999999999999999999988644 8999
Q ss_pred HHHHHHHHHhcchhhHHHhhc--ccccHHHHHHHhcC-CCCh------------HHHHHHHHHHHHHhcCCCCC-CchhH
Q 038250 237 AVLVLREIVSSDHRKVNVLLD--IEGAIEPLFKLIKE-PICP------------TATKASLVVVYRTITSASAT-EKPIQ 300 (444)
Q Consensus 237 A~~~L~~L~s~~~~~~~~i~~--~~g~i~~Lv~ll~~-~~~~------------~~~~~a~~aL~~L~~~~~~~-~~~~~ 300 (444)
|+.+|.+|+ ...+....++. ..|+|++|+.+|.. +... -.+..|+.||.||+..++|+ ++.+.
T Consensus 521 AA~ALArLl-is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~ 599 (778)
T 3opb_A 521 GCRALTRML-IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCK 599 (778)
T ss_dssp HHHHHHHHH-HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHH-hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence 999999996 33333334421 24999999999983 2111 23778999999999987410 12478
Q ss_pred HHHhc-CcHHHHHHHhhccccchHHHHHHHHHHhcCChhhH-HHHhcCCC------ChHHHHHHHhhcChhHHHHHHHHH
Q 038250 301 KFVDM-GLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR-GDAYNNSL------IFPVIVKKILRVSDLATEFAVSIL 372 (444)
Q Consensus 301 ~i~~~-g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g------~i~~Lv~ll~~~~~~~~~~a~~~L 372 (444)
.++++ |+++.|..+|.+++..++..|+.+|.||+.++++. ..+ .+.+ .++.||.++...+...++.|+++|
T Consensus 600 ~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~-~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 600 HIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF-FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678 (778)
T ss_dssp HHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT-SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH-HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88985 99999999999989999999999999999988875 355 3222 378999999888999999999999
Q ss_pred HHHccccccchHHHHHHHHhh-ChHHHHHHHHhc--CCChHHHHHHHHHHHHHHhh
Q 038250 373 WKLCKNEEREEKTAFAEALQV-GAFQKLLLLLQV--GCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 373 ~~L~~~~~~~~~~~~~~~~~~-g~l~~Ll~ll~~--~~~~~~k~~a~~ll~~l~~~ 425 (444)
.+++.. ++...+.+++. +++..++.+++. + ++.++.+++.++..+..+
T Consensus 679 AnLts~----~~~ia~~ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 679 ANIATT----IPLIAKELLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHH----CHHHHHHHTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT
T ss_pred HHhcCC----ChHHHHHHHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHh
Confidence 999762 35666777754 899999999999 6 899999999988888853
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=2e-21 Score=184.69 Aligned_cols=185 Identities=11% Similarity=0.104 Sum_probs=165.2
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHH-HHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAE-AFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
+.+.+..|+..|..++.. .++...+++.|++|+|+. +|.+ + ++.+++.|+++|..+...++.++..+++.|
T Consensus 53 ~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s---~----~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g 124 (296)
T 1xqr_A 53 DQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA---G----AAGLRWRAAQLIGTCSQNVAAIQEQVLGLG 124 (296)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC---S----SHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC---C----CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 456888999999999975 458888999999999999 9953 2 689999999999966667788999999999
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250 218 SMRCMVWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 218 ~i~~Lv~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
+++.|+.+|+++ +..+++.|+++|.+|+.+++...+.+ ...|+++.|+.+|+++ ++.+++.|+|+|.+|+.++.
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~-~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~--- 199 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF-LRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHP--- 199 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCG---
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH-HHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCh---
Confidence 999999999975 78999999999999987777777777 4479999999999998 89999999999999998754
Q ss_pred chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250 297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 336 (444)
+.+..+++.|++++|+.+|.+++..+++.|+.+|.+|+..
T Consensus 200 ~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 200 EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999986
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.1e-20 Score=193.42 Aligned_cols=281 Identities=13% Similarity=0.130 Sum_probs=218.9
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhc-CchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDN-GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
.+..+.+.+...+.+.+.+.+..|++.|..++.+ +..|+.+++. |+++.|+++++.. . +..+...++.+|.
T Consensus 331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~--~----d~s~~Ygal~IL~- 402 (778)
T 3opb_A 331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQ--K----MTHCLYGLLVIMA- 402 (778)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTT--C----CTTHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCC--C----CchHHHHHHHHHH-
Confidence 3555666666555545666799999999999875 5678888764 7799999999531 1 4668889999999
Q ss_pred hcCCChh---------------------------------------hhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 038250 202 LFPLAGE---------------------------------------GLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLR 242 (444)
Q Consensus 202 ~l~~~~~---------------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~ 242 (444)
|++.+.+ ++..+.++|+||.|+.+++++++.+|+.|+++|.
T Consensus 403 NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~ 482 (778)
T 3opb_A 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIY 482 (778)
T ss_dssp HTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6654211 5667889999999999999999999999999999
Q ss_pred HHHhcchhhHHHhhcccccHHHHHHHhcCCCCh--HHHHHHHHHHHHHhcCCCCCCchhHHHH--h-cCcHHHHHHHhhc
Q 038250 243 EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICP--TATKASLVVVYRTITSASATEKPIQKFV--D-MGLVSLLLEMLVD 317 (444)
Q Consensus 243 ~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~--~~~~~a~~aL~~L~~~~~~~~~~~~~i~--~-~g~v~~Lv~lL~~ 317 (444)
+| +.++++|..+ ...|++++|+.+|.++... ..+..|+.+|.+|+...+ ....+- . .|+|++|+++|..
T Consensus 483 nL-S~d~~~R~~l-vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n----p~~~f~~~~~~~aI~pLv~LL~~ 556 (778)
T 3opb_A 483 NI-TRSKNFIPQL-AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN----PGLIFKKYSALNAIPFLFELLPR 556 (778)
T ss_dssp HH-HTSGGGHHHH-HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC----HHHHSSSSCSTTHHHHHHHTSCC
T ss_pred HH-cCCHHHHHHH-HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC----HHHHcCCCccccchHHHHHHcCC
Confidence 99 6789999999 5579999999999987322 279999999999997764 333221 1 3999999999983
Q ss_pred -cccc-------------hHHHHHHHHHHhcCCh-----hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 318 -AQRS-------------LCEKALSVLDGLCSSD-----YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 318 -~~~~-------------~~~~a~~~L~~L~~~~-----~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
.+.. .+..|+.+|.|||..+ +.+..++.+.|+++.|+.+|.+.+..+++.|++++.||+.+
T Consensus 557 ~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~ 636 (778)
T 3opb_A 557 STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH 636 (778)
T ss_dssp SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 2211 2679999999999876 34666733359999999999988999999999999999985
Q ss_pred cccchHHHH-HHHH------hhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 379 EEREEKTAF-AEAL------QVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 379 ~~~~~~~~~-~~~~------~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
. +.+ +... ..+.++.|+.+++++ +..+|+.|+++|.++.
T Consensus 637 ~-----e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLt 682 (778)
T 3opb_A 637 P-----LTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIA 682 (778)
T ss_dssp G-----GGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHH
T ss_pred c-----HHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 2 222 1222 133588999999998 9999999999999984
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.78 E-value=1.2e-19 Score=138.82 Aligned_cols=77 Identities=30% Similarity=0.428 Sum_probs=69.9
Q ss_pred CCcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 27 GEMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 27 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
......++++|.||||+++|+|||+++|||+||+.||++|+. +..+||.|+.++...++.||..++++|+.|..+++
T Consensus 5 e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 344567899999999999999999999999999999999993 46799999999998899999999999999998775
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.77 E-value=4.4e-19 Score=139.69 Aligned_cols=76 Identities=30% Similarity=0.418 Sum_probs=70.3
Q ss_pred CcCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 28 EMELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
.+...+|++|.||||+++|+|||+++|||+||+.||.+|| .+..+||.|+.++...++.||..++++|+.|..+++
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l--~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL--LNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHT--TSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHH--HcCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 4456789999999999999999999999999999999999 457899999999999999999999999999998875
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.77 E-value=5.6e-19 Score=138.57 Aligned_cols=78 Identities=31% Similarity=0.429 Sum_probs=70.8
Q ss_pred CCcCCCCCCccccccccccCcCceecCCc-chhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 27 GEMELTTPNHFRCPISLDLMKDPVTLSTG-ITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 27 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~cg-~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
......+|++|.||||+++|+|||+++|| |+||+.||++|| ....+||.|++++...++.||..++++|+.|+.+++
T Consensus 13 ~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l--~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL--LSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHT--TTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred hhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHH--HhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence 34456789999999999999999999999 999999999999 346799999999999999999999999999998875
Q ss_pred c
Q 038250 106 S 106 (444)
Q Consensus 106 ~ 106 (444)
.
T Consensus 91 ~ 91 (98)
T 1wgm_A 91 Q 91 (98)
T ss_dssp T
T ss_pred h
Confidence 3
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.72 E-value=3.4e-18 Score=129.07 Aligned_cols=74 Identities=46% Similarity=0.895 Sum_probs=68.5
Q ss_pred CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
..++++|.||||+++|.+||+++|||+||+.||.+|+ ..+...||.|+..+...++.+|..++++|+.|..+++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~-~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHH-TTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHH-HHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence 4578899999999999999999999999999999999 5567899999999998899999999999999998775
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=1.5e-15 Score=154.51 Aligned_cols=289 Identities=12% Similarity=0.129 Sum_probs=217.1
Q ss_pred CCCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHH
Q 038250 117 IPVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEIL 196 (444)
Q Consensus 117 ~~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~ 196 (444)
++...+.|+.|...|+++. -.+.++.|+..|+.++++ ++..+. .++++.|+..|+.. . +|.++...++
T Consensus 16 ~qs~~etI~~L~~Rl~~~t---l~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d--~---~D~e~v~~~L 83 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASST---LLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTD--R---SDSEIIGYAL 83 (651)
T ss_dssp --CHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSC--T---TCHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcc--c---ccHHHHHHHH
Confidence 3334678999999998875 678999999999999864 454444 55689999999643 2 3788999999
Q ss_pred HHHHhhcCCChh-----------------hhhh-cccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh-hHHHhhc
Q 038250 197 STLTLLFPLAGE-----------------GLTY-LGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR-KVNVLLD 257 (444)
Q Consensus 197 ~~L~~~l~~~~~-----------------~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~ 257 (444)
.+|..+++.+++ +... +.+.+.|+.|+.+|++.+-.+|..++..|..|+...++ +.+.|..
T Consensus 84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~ 163 (651)
T 3grl_A 84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV 163 (651)
T ss_dssp HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence 999745554432 1112 24678899999999999999999999999999877776 8888866
Q ss_pred ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH-hcCcHHHHHHHhhcc----ccchHHHHHHHHHH
Q 038250 258 IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFV-DMGLVSLLLEMLVDA----QRSLCEKALSVLDG 332 (444)
Q Consensus 258 ~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~-~~g~v~~Lv~lL~~~----~~~~~~~a~~~L~~ 332 (444)
..++|+.||.+|.+. ...++..++..|.+|+.++. +.++++ -+|+++.|+.++... ...+++.|+.+|.+
T Consensus 164 ~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~----~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 164 SPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNG----AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp STTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCH----HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCH----HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 779999999999988 68899999999999999987 555555 479999999999853 33688999999999
Q ss_pred hcCChhhHHHHhcCCCChHHHHHHHhhcCh------hHHHH---HHHHHHHHcccccc--chHHHHHHHHhhChHHHHHH
Q 038250 333 LCSSDYGRGDAYNNSLIFPVIVKKILRVSD------LATEF---AVSILWKLCKNEER--EEKTAFAEALQVGAFQKLLL 401 (444)
Q Consensus 333 L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~------~~~~~---a~~~L~~L~~~~~~--~~~~~~~~~~~~g~l~~Ll~ 401 (444)
|...+...+.++.+.|+++.|..++....+ ....+ +..++..|+..+.. ++..+...+.+.|++..|++
T Consensus 239 LLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ 318 (651)
T 3grl_A 239 LLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT 318 (651)
T ss_dssp HHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence 998665444444999999999998864321 12233 55666666654221 13455666679999999999
Q ss_pred HHhcCC-ChHHHHHHHHHHHHH
Q 038250 402 LLQVGC-ADKTKEHVSELLKLL 422 (444)
Q Consensus 402 ll~~~~-~~~~k~~a~~ll~~l 422 (444)
++.+.. ...++..|...+..+
T Consensus 319 ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 319 ILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHH
Confidence 887653 456776666655443
No 44
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.69 E-value=1.7e-17 Score=143.42 Aligned_cols=75 Identities=33% Similarity=0.520 Sum_probs=68.3
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
...+|++|.||||+++|.|||+++|||+||+.||.+|+. .+..+||.|+.++...++.||..++++|+.|+..++
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~-~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ-RVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-HTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHH-hCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence 567899999999999999999999999999999999994 433479999999998899999999999999998875
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=124.62 Aligned_cols=75 Identities=25% Similarity=0.505 Sum_probs=64.8
Q ss_pred CCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhc----CCCCCCC--CCcc-cCCCCCCccHHHHHHHHHHHHh
Q 038250 32 TTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHED----GNITCPV--TNRV-LTSFEPIPNHTIRRMIQDWCVE 103 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~----~~~~CP~--c~~~-~~~~~l~~n~~l~~~i~~~~~~ 103 (444)
..+++|.||||+++|.|||+++ |||+||+.||.+||... +..+||. |+.. +...++.||..|+++|+.|..+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3467899999999999999995 99999999999999532 2578999 7666 7788999999999999999987
Q ss_pred ccc
Q 038250 104 NRS 106 (444)
Q Consensus 104 ~~~ 106 (444)
+..
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 753
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=122.67 Aligned_cols=77 Identities=25% Similarity=0.398 Sum_probs=68.2
Q ss_pred cCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCccc-CCCCCCccHHHHHHHHHHHHhcc
Q 038250 29 MELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVL-TSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~-~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
....+++++.||||.++|.+|++++ |||+||+.||.+|+...+...||.|+..+ ....+.+|..++++++.|...++
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999 99999999999999555668999999997 56689999999999999988764
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.61 E-value=2.7e-16 Score=148.79 Aligned_cols=76 Identities=33% Similarity=0.521 Sum_probs=68.7
Q ss_pred cCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 29 MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
....+|++|.||||.++|.|||+++||||||+.||.+|+ ..+..+||.|+.+++..++.||..++++|+.|+..++
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~-~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL-QRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHH-HHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHH-HHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence 345678899999999999999999999999999999999 4555569999999998899999999999999998774
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.56 E-value=3.7e-13 Score=136.99 Aligned_cols=284 Identities=11% Similarity=0.078 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcc-----------------cchhH-hhcCchHHHHHHHHhhccc
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDR-----------------NKRCI-VDNGAVSVLAEAFETFSKT 183 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~-----------------~~~~i-~~~G~i~~Lv~lL~~~~~~ 183 (444)
..++.++..|...- .|.+....++..|..+...++. +.+.+ .+.+.|+.|+.+|++.
T Consensus 60 ~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~--- 134 (651)
T 3grl_A 60 QAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF--- 134 (651)
T ss_dssp HTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC---
T ss_pred hhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc---
Confidence 34667777776652 5788888899999776543322 11222 3568899999999532
Q ss_pred ccccchHHHHHHHHHHHhhcCCChh-hhhhcc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhccccc
Q 038250 184 CLDENVSVLEEILSTLTLLFPLAGE-GLTYLG-SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGA 261 (444)
Q Consensus 184 ~~~~~~~~~~~a~~~L~~~l~~~~~-~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~ 261 (444)
+..++..++..|..++...++ +++.|. ..++|+.|+.+|++....+|..|+.+|.+|+..+.+..+.+ ...|+
T Consensus 135 ----df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklV-AFEna 209 (651)
T 3grl_A 135 ----DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIV-AFENA 209 (651)
T ss_dssp ----CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTH
T ss_pred ----cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHH-HHhcc
Confidence 688999999999977776666 777777 56999999999999999999999999999988888888888 55799
Q ss_pred HHHHHHHhcCCC---ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccc------hHHH---HHHH
Q 038250 262 IEPLFKLIKEPI---CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRS------LCEK---ALSV 329 (444)
Q Consensus 262 i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~------~~~~---a~~~ 329 (444)
++.|+.+++... .-.++..++.+|.||..++. .|+..+.+.|+++.|..+|..+++. ...+ ++.+
T Consensus 210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~---sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~i 286 (651)
T 3grl_A 210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN---SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQL 286 (651)
T ss_dssp HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH---HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Confidence 999999998652 13688999999999999875 6999999999999999999754321 2233 7777
Q ss_pred HHHhcCCh-------hhHHHHhcCCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhh-------
Q 038250 330 LDGLCSSD-------YGRGDAYNNSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQV------- 393 (444)
Q Consensus 330 L~~L~~~~-------~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~------- 393 (444)
+..|+..+ .++..+ .+.|+++.|++++... ...++..|+.++..+.+. +........+.
T Consensus 287 IrlLv~~~~~~~~t~~nQ~~~-~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg----N~~~Q~~fa~~~vp~~~~ 361 (651)
T 3grl_A 287 VRVLVSPNNPPGATSSCQKAM-FQCGLLQQLCTILMATGVPADILTETINTVSEVIRG----CQVNQDYFASVNAPSNPP 361 (651)
T ss_dssp HHHHTCTTSCHHHHHHHHHHH-HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHCEESSSSC
T ss_pred HHHHhCCCCCCCCCHHHHHHH-HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC----CHHHHHHHhhccCCCCCC
Confidence 77777642 245556 8899999999998865 667889999999999984 34444443332
Q ss_pred --ChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 394 --GAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 394 --g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
-++..|+.++.+.....+|-.|...++.+-
T Consensus 362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 233334444555545677766666666553
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.52 E-value=6.8e-15 Score=121.24 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=62.9
Q ss_pred CCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC-CCCCccHHHHHHHHHHHHh
Q 038250 32 TTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS-FEPIPNHTIRRMIQDWCVE 103 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~-~~l~~n~~l~~~i~~~~~~ 103 (444)
.+++++.||||.++|.+|++++|||+||+.||.+|+ ..+...||.|+..+.. ..+.+|..+.++++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSF-RAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHH-HTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHH-hHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 346679999999999999999999999999999999 4566799999999987 6899999999999887643
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.48 E-value=8.5e-15 Score=115.64 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=65.0
Q ss_pred CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
.+++++.||||.+.|.+|+++ +|||+||+.||.+|+ .....||.|+..+...++.+|..++++++.|.....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL--SYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH--TTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHH--HCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 456679999999999999998 899999999999999 456799999999988889999999999999987764
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.7e-14 Score=130.38 Aligned_cols=72 Identities=14% Similarity=0.307 Sum_probs=63.9
Q ss_pred CCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCC--CCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250 33 TPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPV--TNRVLTSFEPIPNHTIRRMIQDWCVEN 104 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~--c~~~~~~~~l~~n~~l~~~i~~~~~~~ 104 (444)
....|+||||+++|++||+. .|||+||+.||.+||...+.+.||+ |++.+...++.||..|+++++.|..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKE 252 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHH
Confidence 35669999999999999985 9999999999999994335578999 999999899999999999999997754
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=122.05 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=62.3
Q ss_pred CCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC-CCCccHHHHHHHHHHHH
Q 038250 33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF-EPIPNHTIRRMIQDWCV 102 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~-~l~~n~~l~~~i~~~~~ 102 (444)
+++++.||||.++|.+|++++|||+||+.||.+|+ ..+...||.|+..+... .+.+|..++++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSF-KAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHH-HTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHH-HhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 45668999999999999999999999999999999 55667899999999877 89999999999998764
No 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=102.95 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=52.0
Q ss_pred CCcCCCCCCccccccccccCcCceecC-CcchhcHHHHHHHHHhcCCCCCCCCCcccCCC-CCCcc
Q 038250 27 GEMELTTPNHFRCPISLDLMKDPVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVLTSF-EPIPN 90 (444)
Q Consensus 27 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~-~l~~n 90 (444)
......+++++.||||+++|.+|++++ |||+||+.||.+|+...+...||.|++.+... .+.+|
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 344566788999999999999999998 99999999999999545557999999875433 34443
No 54
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.44 E-value=2.9e-14 Score=112.62 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=63.7
Q ss_pred CCCCCCccccccccccCcCcee-cCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250 30 ELTTPNHFRCPISLDLMKDPVT-LSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN 104 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~ 104 (444)
...+.+++.||||+++|.+|++ ++|||+||+.||.+|+ ......||.|+..+...++.++..+..+++.+...+
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWL-TEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH-HHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHH-HHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 3456778999999999999999 8999999999999999 444478999999998888888888888887776554
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.41 E-value=1.1e-13 Score=111.11 Aligned_cols=69 Identities=12% Similarity=0.272 Sum_probs=60.3
Q ss_pred CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC----CCCccHHHHHHHHHHHH
Q 038250 32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSF----EPIPNHTIRRMIQDWCV 102 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~----~l~~n~~l~~~i~~~~~ 102 (444)
.+++++.||||.+.|.+|+++ +|||+||+.||.+|+ .....||.|+..+... .+.+|..+.++++.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH--TSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHH--HhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 457789999999999999998 999999999999999 4458999999998765 67889999999887653
No 56
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.7e-13 Score=98.35 Aligned_cols=57 Identities=9% Similarity=0.212 Sum_probs=49.6
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l 87 (444)
...+++.+.||||.+.+.+|++++|||+||+.||.+|+ ..+...||.|+..+...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALL-SSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHH-TTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHH-HhCcCCCCCCCcCCChhhc
Confidence 34567789999999999999999999999999999999 4566789999998876543
No 57
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=1e-14 Score=110.08 Aligned_cols=66 Identities=24% Similarity=0.415 Sum_probs=54.9
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhc-----CCCCCCCCCcccCCCCCCccHHHHH
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHED-----GNITCPVTNRVLTSFEPIPNHTIRR 95 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~-----~~~~CP~c~~~~~~~~l~~n~~l~~ 95 (444)
...+++++.||||.+.|.+|++++|||+||+.||.+|+... +...||.|+..+...++.+|..+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 44567889999999999999999999999999999999321 2678999999998777777765543
No 58
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-13 Score=102.00 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=52.4
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHH
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRR 95 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~ 95 (444)
.....+.+.||||.+.|.+|++++|||+||+.||.+|+ +....||.|+..+. ..+.+|..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF--RATPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH--HHCSBCSSSCCBCC-SCCEECHHHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH--HCCCcCCCcCcccc-ccCCcHHHHHH
Confidence 34556678999999999999999999999999999999 34678999999986 56777754433
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.39 E-value=1.8e-13 Score=111.64 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=65.4
Q ss_pred cCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250 29 MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN 104 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~ 104 (444)
....+++++.||||.+.|.+|++++|||+||+.||.+|+ ..+...||.|+..+...++.++..+.+.+..+....
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C 85 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSI-RDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC 85 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHH-hhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeEC
Confidence 445778889999999999999999999999999999999 444558999999998888889999999988766554
No 60
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=5.5e-14 Score=107.62 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=56.0
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhc----CCCCCCCCCcccCCCCCCccHHHHH
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHED----GNITCPVTNRVLTSFEPIPNHTIRR 95 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~----~~~~CP~c~~~~~~~~l~~n~~l~~ 95 (444)
...+++++.||||.+.+.+|++++|||+||+.|+.+|+... +...||.|+..+...++.+|..+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 44577889999999999999999999999999999999442 3679999999998888887765544
No 61
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=99.73 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=51.5
Q ss_pred cCCCCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250 29 MELTTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN 90 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n 90 (444)
....+++++.||||++.|.+|+++ +|||+||+.||.+|+ +....||.|+..+...++.++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF--YYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHH--HHCSSCTTTCCCCCSSCSCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHH--HcCCcCCCcCcccCccccccc
Confidence 345678889999999999999997 999999999999999 336789999999987766544
No 62
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=112.02 Aligned_cols=70 Identities=21% Similarity=0.444 Sum_probs=59.9
Q ss_pred CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC-------CCCCccHHHHHHHHHHH
Q 038250 31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS-------FEPIPNHTIRRMIQDWC 101 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~-------~~l~~n~~l~~~i~~~~ 101 (444)
....+++.||||.++|.+|++++|||+||+.||.+|+ ..+...||.|+..+.. ..+..|..+..+++.|.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTV-EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCC-CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHH-hHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456679999999999999999999999999999999 5557899999998863 46777888888887765
No 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.6e-14 Score=106.50 Aligned_cols=66 Identities=21% Similarity=0.466 Sum_probs=56.0
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh----cCCCCCCCCCcccCCCCCCccHHHHH
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE----DGNITCPVTNRVLTSFEPIPNHTIRR 95 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~----~~~~~CP~c~~~~~~~~l~~n~~l~~ 95 (444)
...+++.+.||||.+.+.+|++++|||+||+.|+.+|+.. .+...||.|+..+...++.+|..+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 4456778999999999999999999999999999999943 24689999999998888877765543
No 64
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=1.1e-13 Score=112.74 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=63.1
Q ss_pred CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhcc
Q 038250 32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENR 105 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~ 105 (444)
.+.+++.||||.++|.+|+++ +|||+||+.||.+|+ . ..||.|+..+...++.+|..+.++++.+.....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-G---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-T---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHh-c---CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 456779999999999999999 999999999999999 2 789999999988889999999999998877653
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.34 E-value=7.1e-11 Score=106.13 Aligned_cols=189 Identities=17% Similarity=0.139 Sum_probs=153.4
Q ss_pred cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 038250 167 NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVS 246 (444)
Q Consensus 167 ~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s 246 (444)
.+.++.|+.+|. ++ +..++..|+..|.. + ...++++.|+.+|.++++.++..|+.+|..+ .
T Consensus 18 ~~~~~~L~~~L~---~~----~~~vR~~A~~~L~~-~----------~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~-~ 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DD----SYYVRRAAAYALGK-I----------GDERAVEPLIKALKDEDAWVRRAAADALGQI-G 78 (211)
T ss_dssp GGGHHHHHHHTT---CS----SHHHHHHHHHHHHH-H----------CCGGGHHHHHHHTTCSCHHHHHHHHHHHHHH-C
T ss_pred HhHHHHHHHHHc---CC----CHHHHHHHHHHHHH-h----------CCccHHHHHHHHHcCCCHHHHHHHHHHHHhh-C
Confidence 457899999994 22 68999999999983 2 2247899999999999999999999999988 2
Q ss_pred cchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHH
Q 038250 247 SDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKA 326 (444)
Q Consensus 247 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a 326 (444)
. .+.++.|+.+|.++ ++.++..|+++|..+.. .++++.|+++|.+++..++..|
T Consensus 79 ~-----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a 132 (211)
T 3ltm_A 79 D-----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD--------------ERAVEPLIKALKDEDWFVRIAA 132 (211)
T ss_dssp C-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC--------------GGGHHHHHHHTTCSSHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHhCCCHHHHHHH
Confidence 1 35689999999888 89999999999988842 1478999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
+.+|..+.. ...++.|+.++.+.++.++..|+.+|..+.. ..+++.|..+++..
T Consensus 133 ~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~ 186 (211)
T 3ltm_A 133 AFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETG 186 (211)
T ss_dssp HHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHC
T ss_pred HHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCC
Confidence 999998843 3578889998877788999999999998865 35678889999887
Q ss_pred CChHHHHHHHHHHHHHHhhcc
Q 038250 407 CADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 407 ~~~~~k~~a~~ll~~l~~~~~ 427 (444)
++.+|..|...|..+.....
T Consensus 187 -~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 187 -TGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -CHHHHHHHHHHHHC------
T ss_pred -CHHHHHHHHHHHHhcCCCCC
Confidence 89999999998888875544
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.34 E-value=2e-13 Score=96.69 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=47.7
Q ss_pred ccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccH
Q 038250 36 HFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNH 91 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~ 91 (444)
.|.||||+++|.|||++ +|||+||+.||++|+.. +.+||.+++++...++.|+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCChhhcEECc
Confidence 48999999999999999 99999999999999943 34699999999988888764
No 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.33 E-value=4.2e-13 Score=116.26 Aligned_cols=71 Identities=21% Similarity=0.379 Sum_probs=61.0
Q ss_pred CCCCccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC-CCCCCccHHHHHHHHHHHHh
Q 038250 32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT-SFEPIPNHTIRRMIQDWCVE 103 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~-~~~l~~n~~l~~~i~~~~~~ 103 (444)
.+.+.+.||||.+.|.+|+++ +|||+||+.||.+|+ ..+...||.|+..+. ...+.+|..+.++|..+...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITAL-RSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH-HTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHH-HhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 456678999999999999998 999999999999999 556789999999985 45689999999999888654
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.32 E-value=1.9e-10 Score=108.16 Aligned_cols=223 Identities=12% Similarity=-0.033 Sum_probs=149.7
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF 203 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l 203 (444)
++.++..|.+. +...+..|+..|..+.. .++++.|+.+|.+ . ++.++..|+.+|. .+
T Consensus 25 i~~L~~~L~~~----~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d---~----~~~vR~~A~~aL~-~l 81 (280)
T 1oyz_A 25 DDELFRLLDDH----NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSD---K----NYIRRDIGAFILG-QI 81 (280)
T ss_dssp HHHHHHHTTCS----SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTC---S----SHHHHHHHHHHHH-HS
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcC---C----CHHHHHHHHHHHH-Hh
Confidence 56677777654 78889999999998852 2468889999942 2 5889999999998 44
Q ss_pred CCChhhhhhcccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250 204 PLAGEGLTYLGSASSMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 204 ~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
...+... ...++.|.. ++++.++.++..|+++|.++...++.. ...+++.|+.+++++ ++.++..|+
T Consensus 82 ~~~~~~~-----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~------~~~~~~~L~~~l~d~-~~~vR~~a~ 149 (280)
T 1oyz_A 82 KICKKCE-----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY------SPKIVEQSQITAFDK-STNVRRATA 149 (280)
T ss_dssp CCCTTTH-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG------HHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred ccccccc-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc------cHHHHHHHHHHhhCC-CHHHHHHHH
Confidence 4322211 012344442 356678999999999999994333211 134578888888887 788888888
Q ss_pred HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD 362 (444)
Q Consensus 283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 362 (444)
.+|.++.. .++++.|+.+|.+.+..++..|+.+|..+... ...+++.|+.++.+.+.
T Consensus 150 ~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~ 206 (280)
T 1oyz_A 150 FAISVIND--------------KATIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNE 206 (280)
T ss_dssp HHHHTC-----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCH
T ss_pred HHHHhcCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCH
Confidence 88876532 13788888888888888888888888887431 12345677777766677
Q ss_pred hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 363 LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 363 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
.++..|+.+|..+.. ..+++.|+.++... + ++..|+..|..+
T Consensus 207 ~vR~~A~~aL~~~~~---------------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 207 EVRIEAIIGLSYRKD---------------KRVLSVLCDELKKN-T--VYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHHHHHTTC---------------GGGHHHHHHHHTSS-S--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---------------HhhHHHHHHHhcCc-c--HHHHHHHHHHhc
Confidence 788888888877653 24555556655543 2 444444444443
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.31 E-value=7.1e-13 Score=111.16 Aligned_cols=63 Identities=21% Similarity=0.441 Sum_probs=50.7
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHH
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDW 100 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~ 100 (444)
++++.||||.+.|.+||+++|||+||..||.+|+ .....||.|+.++.... .+..+...++.+
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~--~~~~~~~~i~~~ 113 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM--KRKIECPICRKDIKSKT--YSLVLDNCINKM 113 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHT--TTCSBCTTTCCBCCCEE--ECHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHH--HcCCcCCCCCCcCCCCC--CccchhHHHHHH
Confidence 4568999999999999999999999999999999 55678999999886432 344455555443
No 70
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=96.15 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=49.3
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh-cCCCCCCCCCcccCCCCC
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE-DGNITCPVTNRVLTSFEP 87 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~-~~~~~CP~c~~~~~~~~l 87 (444)
...+++++.||||.+.+.+|++++|||+||+.|+.+|+.. .+...||.|+..+...++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4567788999999999999999999999999999999931 245789999998876543
No 71
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=6.2e-13 Score=107.42 Aligned_cols=70 Identities=19% Similarity=0.416 Sum_probs=57.5
Q ss_pred CCCccccccccccCcCceecCCcchhcHHHHHHHHHhc-CCCCCCCCCcccCCCCCCccHHHHHHHHHHHH
Q 038250 33 TPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHED-GNITCPVTNRVLTSFEPIPNHTIRRMIQDWCV 102 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~-~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~ 102 (444)
+.+.+.||||.+.+.+|++++|||+||+.||.+|+... +...||.|+..+...++.+|..+.++++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999322 33689999999988888887666666665554
No 72
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=91.65 Aligned_cols=49 Identities=27% Similarity=0.527 Sum_probs=42.8
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhc-CCCCCCCC
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHED-GNITCPVT 78 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~-~~~~CP~c 78 (444)
...+++++.||||.+.+.+|++++|||+||+.||.+|+... +...||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45677889999999999999999999999999999999422 45789987
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.28 E-value=4.4e-10 Score=100.10 Aligned_cols=189 Identities=20% Similarity=0.129 Sum_probs=154.2
Q ss_pred CCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHH
Q 038250 118 PVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILS 197 (444)
Q Consensus 118 ~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~ 197 (444)
+..++....+++.|.+. +...+..|+..|..+.. .++++.|+.+|. ++ ++.++..|+.
T Consensus 10 ~~~~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~---~~----~~~vr~~a~~ 67 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK---DE----DAWVRRAAAD 67 (201)
T ss_dssp CCCHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT---CS----SHHHHHHHHH
T ss_pred ccCCcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc---CC----CHHHHHHHHH
Confidence 34567778889988876 88999999999998753 247899999994 22 6889999999
Q ss_pred HHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHH
Q 038250 198 TLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTA 277 (444)
Q Consensus 198 ~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 277 (444)
+|.. + ...++++.|+.+|.+.++.++..|+++|..+ .. ..+++.|+.+|+++ ++.+
T Consensus 68 ~L~~-~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~-----------~~~~~~L~~~l~d~-~~~v 123 (201)
T 3ltj_A 68 ALGQ-I----------GDERAVEPLIKALKDEDGWVRQSAAVALGQI-GD-----------ERAVEPLIKALKDE-DWFV 123 (201)
T ss_dssp HHHH-H----------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC-----------GGGHHHHHHHTTCS-SHHH
T ss_pred HHHh-h----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc-----------HHHHHHHHHHHcCC-CHHH
Confidence 9983 2 2246799999999999999999999999988 22 24678899999888 8999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH
Q 038250 278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI 357 (444)
Q Consensus 278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll 357 (444)
+..|+++|..+.. .++++.|+.+|.+.++.++..|+.+|..+.. ..+++.|..++
T Consensus 124 r~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l 178 (201)
T 3ltj_A 124 RIAAAFALGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHHHTC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHH
Confidence 9999999998842 2478999999999999999999999999842 23577888888
Q ss_pred hhcChhHHHHHHHHHHHHcc
Q 038250 358 LRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 358 ~~~~~~~~~~a~~~L~~L~~ 377 (444)
.+.++.++..|..+|..+..
T Consensus 179 ~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 179 ETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHCCHHHHHHHHHHHHHCC-
T ss_pred hCCCHHHHHHHHHHHHHHHh
Confidence 88899999999999988754
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.27 E-value=2.7e-10 Score=101.52 Aligned_cols=185 Identities=17% Similarity=0.130 Sum_probs=152.6
Q ss_pred cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 038250 167 NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVS 246 (444)
Q Consensus 167 ~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s 246 (444)
.+..+.++++|++ + ++.++..|+.+|.. +. ..++++.|+.+|.++++.++..|+.+|..+ .
T Consensus 13 ~~~~~~~i~~L~~---~----~~~vr~~A~~~L~~-~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~-~ 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQD---D----SYYVRRAAAYALGK-IG----------DERAVEPLIKALKDEDAWVRRAAADALGQI-G 73 (201)
T ss_dssp HHHHHHHHHHTTC---S----CHHHHHHHHHHHHH-HC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-C
T ss_pred CcchHHHHHHhcC---C----CHHHHHHHHHHHHh-cC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh-C
Confidence 4567889999943 3 68999999999983 22 246799999999999999999999999988 2
Q ss_pred cchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHH
Q 038250 247 SDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKA 326 (444)
Q Consensus 247 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a 326 (444)
. .++++.|+.+|.++ ++.++..|+++|..+... .+++.|+.+|.+.++.++..|
T Consensus 74 ~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~--------------~~~~~L~~~l~d~~~~vr~~a 127 (201)
T 3ltj_A 74 D-----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGDE--------------RAVEPLIKALKDEDWFVRIAA 127 (201)
T ss_dssp C-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCG--------------GGHHHHHHHTTCSSHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCcH--------------HHHHHHHHHHcCCCHHHHHHH
Confidence 1 25688999999987 899999999999987421 378999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 327 LSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 327 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
+.+|..+.. ...++.|+.++.+.+..++..|+.+|..+.. ..+++.|..+++..
T Consensus 128 ~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------------~~~~~~L~~~l~d~ 181 (201)
T 3ltj_A 128 AFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETG 181 (201)
T ss_dssp HHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHC
T ss_pred HHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCC
Confidence 999998743 4678889998887888999999999998854 24678888889887
Q ss_pred CChHHHHHHHHHHHHHH
Q 038250 407 CADKTKEHVSELLKLLN 423 (444)
Q Consensus 407 ~~~~~k~~a~~ll~~l~ 423 (444)
++.+|..|...|..+.
T Consensus 182 -~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 182 -TGFARKVAVNYLETHK 197 (201)
T ss_dssp -CHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHHHHH
Confidence 8999999998887654
No 75
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=2.3e-12 Score=93.13 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=47.6
Q ss_pred Cccccccccc-cCcCc----eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250 35 NHFRCPISLD-LMKDP----VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN 90 (444)
Q Consensus 35 ~~~~Cpic~~-~~~~P----v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n 90 (444)
+++.||||.+ .+.+| ++++|||+||+.||.+|+ .++...||.|+..+...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF-VRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHH-HTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHH-HcCCCcCCCCCCccccccceee
Confidence 4689999999 99999 467999999999999998 4667889999999987776654
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.27 E-value=2.6e-10 Score=102.41 Aligned_cols=189 Identities=19% Similarity=0.112 Sum_probs=152.2
Q ss_pred ChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250 120 SSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL 199 (444)
Q Consensus 120 ~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L 199 (444)
+++.++.++..|.+. +...+..|+..|..+.. .++++.|+.+|. ++ +..++..|+.+|
T Consensus 17 ~~~~~~~L~~~L~~~----~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~---~~----~~~vr~~a~~aL 74 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK---DE----DAWVRRAAADAL 74 (211)
T ss_dssp CGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT---CS----CHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHc---CC----CHHHHHHHHHHH
Confidence 356788888888765 88899999999988753 247899999994 22 688999999999
Q ss_pred HhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250 200 TLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK 279 (444)
Q Consensus 200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 279 (444)
.. +. ..++++.|+.+|.+.++.++..|+.+|..+ .. .+.++.|+.+++++ ++.++.
T Consensus 75 ~~-~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~-~~-----------~~~~~~L~~~l~d~-~~~vr~ 130 (211)
T 3ltm_A 75 GQ-IG----------DERAVEPLIKALKDEDGWVRQSAAVALGQI-GD-----------ERAVEPLIKALKDE-DWFVRI 130 (211)
T ss_dssp HH-HC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC-----------GGGHHHHHHHTTCS-SHHHHH
T ss_pred Hh-hC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc-----------HHHHHHHHHHHhCC-CHHHHH
Confidence 83 32 356799999999999999999999999988 22 25688999999888 899999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250 280 ASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR 359 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~ 359 (444)
.|+.+|.++.. ..+++.|+.+|.+.++.++..|+.+|..+.. ..+++.|..++..
T Consensus 131 ~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d 185 (211)
T 3ltm_A 131 AAAFALGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHHCC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC
Confidence 99999999832 1378999999998899999999999999853 3456788888888
Q ss_pred cChhHHHHHHHHHHHHcccc
Q 038250 360 VSDLATEFAVSILWKLCKNE 379 (444)
Q Consensus 360 ~~~~~~~~a~~~L~~L~~~~ 379 (444)
.++.++..|..+|..+....
T Consensus 186 ~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 186 GTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp CCHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHhcCCCC
Confidence 89999999999999988753
No 77
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.25 E-value=2.7e-12 Score=111.74 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=64.4
Q ss_pred cCCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhc
Q 038250 29 MELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVEN 104 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~ 104 (444)
....+++.|.||||.++|.+||+++|||+||+.||.+|+ ..+...||.|+..+...++.++..+.+.+..+....
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C 85 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSI-RDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC 85 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHH-HhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCC
Confidence 345678899999999999999999999999999999999 444568999999998888889998888887654443
No 78
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=1.7e-12 Score=105.48 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=57.6
Q ss_pred CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCC-ccHHHHHHHHHHHH
Q 038250 31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPI-PNHTIRRMIQDWCV 102 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~-~n~~l~~~i~~~~~ 102 (444)
..+++++.||||.+.|.+|++++|||+||+.||.+|+ ..+...||.|+..+...++. ++..+.+++..+..
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCL-KVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMV 89 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEE
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHH-hHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcC
Confidence 3456779999999999999999999999999999999 44567899999999876643 45666666655444
No 79
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.25 E-value=6.4e-13 Score=111.40 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=59.5
Q ss_pred CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC---------CCCCCccHHHHHHHHHHH
Q 038250 31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT---------SFEPIPNHTIRRMIQDWC 101 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~---------~~~l~~n~~l~~~i~~~~ 101 (444)
..+++.|.||||.++|.+||+++|||+||+.||.+|+ ..+...||.|+.++. ...+.++..+++.+..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~ 104 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASIL-SSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLP 104 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHG-GGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSE
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHH-hcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccc
Confidence 4678889999999999999999999999999999999 556678999998643 224568888888886654
Q ss_pred Hhc
Q 038250 102 VEN 104 (444)
Q Consensus 102 ~~~ 104 (444)
...
T Consensus 105 v~C 107 (141)
T 3knv_A 105 AVC 107 (141)
T ss_dssp EEC
T ss_pred ccc
Confidence 443
No 80
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.7e-12 Score=92.74 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 31 LTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
....+.+.|+||++.+.+|++++|||+||+.||.+|+ .....||.|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGAS--WLGKRCALCRQEIPE 61 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCT--TCSSBCSSSCCBCCH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHH--HCCCcCcCcCchhCH
Confidence 3345678999999999999999999999999999999 445789999988764
No 81
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.22 E-value=1e-09 Score=103.11 Aligned_cols=223 Identities=10% Similarity=-0.006 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHh--hcccccccchHHHHHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFET--FSKTCLDENVSVLEEILST 198 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~--~~~~~~~~~~~~~~~a~~~ 198 (444)
+..++.++..|.+. +...+..|+..|..+..... .++.++.+|.+ .++. ++.++..|+.+
T Consensus 53 ~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~----------~~~~l~~~L~~~~~~d~----~~~vr~~a~~a 114 (280)
T 1oyz_A 53 QDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKK----------CEDNVFNILNNMALNDK----SACVRATAIES 114 (280)
T ss_dssp HHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTT----------THHHHHHHHHHHHHHCS----CHHHHHHHHHH
T ss_pred chHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccc----------cchHHHHHHHHHHhcCC----CHHHHHHHHHH
Confidence 34566677766654 78889999999988753221 23444444421 1222 68899999999
Q ss_pred HHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHH
Q 038250 199 LTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTAT 278 (444)
Q Consensus 199 L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 278 (444)
|..+...++. ....+++.|+.+|.+.++.++..|+.+|.++. . .++++.|+.+++++ ++.++
T Consensus 115 L~~l~~~~~~-----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~-~-----------~~~~~~L~~~l~d~-~~~vr 176 (280)
T 1oyz_A 115 TAQRCKKNPI-----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN-D-----------KATIPLLINLLKDP-NGDVR 176 (280)
T ss_dssp HHHHHHHCGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------CCHHHHHHHHTCS-SHHHH
T ss_pred HHHHhccCCc-----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-C-----------HHHHHHHHHHHcCC-CHHHH
Confidence 9832211111 12356899999999999999999999999872 2 25789999999988 79999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHh
Q 038250 279 KASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKIL 358 (444)
Q Consensus 279 ~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~ 358 (444)
..|+++|..+.... ..+++.|+.+|.+.+..++..|+.+|..+. +..+++.|++.+.
T Consensus 177 ~~a~~aL~~~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~ 233 (280)
T 1oyz_A 177 NWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELK 233 (280)
T ss_dssp HHHHHHHHHHTCCC------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHT
T ss_pred HHHHHHHHhhccCc------------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhc
Confidence 99999999885322 146789999999999999999999999875 3467889999886
Q ss_pred hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHH
Q 038250 359 RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELL 419 (444)
Q Consensus 359 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll 419 (444)
+. .++..|+.+|..+.. ..+++.|..+++...++.....+...+
T Consensus 234 d~--~vr~~a~~aL~~i~~---------------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 234 KN--TVYDDIIEAAGELGD---------------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp SS--SCCHHHHHHHHHHCC---------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred Cc--cHHHHHHHHHHhcCc---------------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 53 378888888888765 367899999998765667766665544
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=87.07 Aligned_cols=49 Identities=22% Similarity=0.608 Sum_probs=42.3
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHh-cCCCCCCCC
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHE-DGNITCPVT 78 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~-~~~~~CP~c 78 (444)
...+++.+.||||.+.+.+|++++|||+||+.||.+|+.. .....||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4456778999999999999999999999999999999732 256789987
No 83
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.20 E-value=3.7e-12 Score=93.77 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=48.7
Q ss_pred CCCCccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250 32 TTPNHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN 90 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n 90 (444)
...+++.||||.+.+.+| ++++|||+||+.||.+|+ +....||.|+..+...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH--HHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH--HcCCCCCCCCCccChhheeec
Confidence 345678999999999998 888999999999999999 344689999999987776654
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.1e-11 Score=93.71 Aligned_cols=57 Identities=21% Similarity=0.425 Sum_probs=48.3
Q ss_pred cCCCCCCccccccccccCcC----ceecCCcchhcHHHHHHHHHhc-CCCCCCCCCcccCCC
Q 038250 29 MELTTPNHFRCPISLDLMKD----PVTLSTGITYDRENIEKWIHED-GNITCPVTNRVLTSF 85 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~~~~----Pv~~~cg~~~c~~ci~~~~~~~-~~~~CP~c~~~~~~~ 85 (444)
....+.+.+.||||.+.|.+ |++++|||+||+.|+.+|+... +...||.|+..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34567778999999999999 9999999999999999999432 257899999987654
No 85
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-11 Score=89.85 Aligned_cols=53 Identities=19% Similarity=0.414 Sum_probs=45.4
Q ss_pred CCCCCCccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 30 ELTTPNHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
....++.+.|+||++.+.+| +.++|||+||..||.+|+. ....||.|+..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH--HCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH--cCCCCCCCCCccCc
Confidence 34556779999999999998 8889999999999999993 36789999988753
No 86
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.13 E-value=5.1e-11 Score=88.78 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=45.5
Q ss_pred CCCCCccccccccccCc--CceecC--CcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC
Q 038250 31 LTTPNHFRCPISLDLMK--DPVTLS--TGITYDRENIEKWIHEDGNITCPVTNRVLTSFE 86 (444)
Q Consensus 31 ~~~~~~~~Cpic~~~~~--~Pv~~~--cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~ 86 (444)
...++++.||||.+.+. +++.++ |||+||+.|+.+++ ..+.+.||.||+.+....
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~-~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT-TSSCSBCTTTCCBCSSCS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHH-hcCCCCCCCCCCccCCCc
Confidence 34677899999999884 556655 99999999999998 556789999999887654
No 87
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.12 E-value=4.2e-11 Score=89.79 Aligned_cols=59 Identities=20% Similarity=0.382 Sum_probs=48.2
Q ss_pred CCCCCCccccccccccCcCc---eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250 30 ELTTPNHFRCPISLDLMKDP---VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN 90 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~P---v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n 90 (444)
.....+.+.|+||++.|.+| +.++|||.||+.||.+|+ +....||.|+..+...++.++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL--EQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHH--TTTCSCTTTCCCCCCSCSCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHH--HcCCcCcCcCCccCCcccCCC
Confidence 44556778999999999877 445999999999999999 455799999999887655443
No 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.10 E-value=1.5e-11 Score=88.44 Aligned_cols=53 Identities=19% Similarity=0.378 Sum_probs=45.7
Q ss_pred CccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250 35 NHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP 89 (444)
Q Consensus 35 ~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~ 89 (444)
+++.||||.+.+.+| +.++|||+||..|+.+|+. ....||.|+..+...++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH--HCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH--cCCCCCCCCccCCccceee
Confidence 457999999999998 7889999999999999993 3678999999988766544
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.09 E-value=1.8e-09 Score=114.44 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=141.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH-HhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250 218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK-LIKEPICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
.|.++++.|++.++..|..|+.+|.+|+ .++..+..+ ...|+|.+++. +|.++ +.+++..|+++|+||+.+.. .
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~-~~~~~~~l~-~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g--~ 109 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIV-QDAKCRKLL-LREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEE--A 109 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHT-TSHHHHHHH-HHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSC--H
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHH-cCcHHHHHH-HHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcC--c
Confidence 4556778899999999999999999995 577777777 45688877654 67766 89999999999999998753 3
Q ss_pred chhHHHHhcCcHHHHHHHhhccc---------------------cchHHHHHHHHHHhcCChh-hHHHHhcCCCChHHHH
Q 038250 297 KPIQKFVDMGLVSLLLEMLVDAQ---------------------RSLCEKALSVLDGLCSSDY-GRGDAYNNSLIFPVIV 354 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~~~---------------------~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv 354 (444)
+.+..+++.|++++|+.+|.... ..+.+.++.+|++||..++ ....+ ...++++.|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v-~~~~~l~~l~ 188 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAV-ATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HTCHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HhcccHHHHH
Confidence 47888999999999999986311 1244678899999986444 44455 7789999999
Q ss_pred HHHhhc---ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChH---HHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 355 KKILRV---SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAF---QKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 355 ~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l---~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
..+.+. ...+...|+.+|..|+.. +.+....+.+.|.. ..++.+.... . ..+..++.+|..+
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~d----n~~~~~~i~~~~~~~~~~~ll~~~~~~-~-~~~~la~giL~Ni 256 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSED----NLKVGQAITDDQETHVYDVLLKLATGT-D-PRAVMACGVLHNV 256 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHTCCSSCHHHHHHHHHHSS-C-TTHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhcc----CHHHHHHHHhcchHHHHHHHHHHhcCC-c-HHHHHHHHHHHhH
Confidence 998664 356888999999999983 46666666666543 3333333333 3 3344555544443
No 90
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.07 E-value=2.4e-09 Score=116.47 Aligned_cols=272 Identities=10% Similarity=0.093 Sum_probs=184.2
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchh--Hh--hcCchHHHHHHHHhhcccccccchHHHHHHHHHH
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRC--IV--DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTL 199 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~--i~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L 199 (444)
++.++..+.+ ++...+..|+..|..++.+.+..-.. +. -.+.++.|+++++ +. +..++..|+.+|
T Consensus 130 l~~L~~~l~~----~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~---~~----~~~vR~~A~~aL 198 (852)
T 4fdd_A 130 LPKLCSLLDS----EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK---HS----SPKIRSHAVACV 198 (852)
T ss_dssp HHHHHHHHSC----SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT---CS----SHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc---CC----CHHHHHHHHHHH
Confidence 4444444443 47788999999999998764432110 00 1234555555552 22 688999999999
Q ss_pred HhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250 200 TLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATK 279 (444)
Q Consensus 200 ~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 279 (444)
...+....... .-.-.+.++.+..++.+++.+++..|+.+|..|+...++.-... ..++++.++.++++. ++.++.
T Consensus 199 ~~~~~~~~~~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~--l~~l~~~l~~~~~~~-~~~vr~ 274 (852)
T 4fdd_A 199 NQFIISRTQAL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH--MHNIVEYMLQRTQDQ-DENVAL 274 (852)
T ss_dssp HTTTTTTCHHH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG--HHHHHHHHHHHHTCS-SHHHHH
T ss_pred HHHHhcccHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH--HHHHHHHHHHHccCC-cHHHHH
Confidence 85444332211 11113578888898888899999999999999976555432222 136888999999887 789999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHh---cCcHHHHHHHhh-----------c-----------cccchHHHHHHHHHHhc
Q 038250 280 ASLVVVYRTITSASATEKPIQKFVD---MGLVSLLLEMLV-----------D-----------AQRSLCEKALSVLDGLC 334 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~~~~~~~~i~~---~g~v~~Lv~lL~-----------~-----------~~~~~~~~a~~~L~~L~ 334 (444)
.|+..+..++.... .+. .+. ...++.|+..+. + .+-.++..|..+|..|+
T Consensus 275 ~a~e~l~~l~~~~~----~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 275 EACEFWLTLAEQPI----CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHTTSTT----HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchh----HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence 99999999987643 332 222 246777777762 2 12246888999999988
Q ss_pred CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHH
Q 038250 335 SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEH 414 (444)
Q Consensus 335 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~ 414 (444)
..... .+ . ...++.+...+.+.+...++.|+.+|..++... .+... -.-.++++.|+.++.+. ++.+|..
T Consensus 350 ~~~~~--~~-~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~----~~~~~-~~l~~~l~~l~~~l~d~-~~~Vr~~ 419 (852)
T 4fdd_A 350 NVYRD--EL-L-PHILPLLKELLFHHEWVVKESGILVLGAIAEGC----MQGMI-PYLPELIPHLIQCLSDK-KALVRSI 419 (852)
T ss_dssp HHHGG--GG-H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT----HHHHG-GGHHHHHHHHHHHTTCS-SHHHHHH
T ss_pred HhccH--HH-H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc----hHHHH-HHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 63321 11 1 135677777776678899999999999999843 22222 23467889999999877 8999999
Q ss_pred HHHHHHHHHhh
Q 038250 415 VSELLKLLNPH 425 (444)
Q Consensus 415 a~~ll~~l~~~ 425 (444)
|++.+..+...
T Consensus 420 a~~~l~~l~~~ 430 (852)
T 4fdd_A 420 TCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888764
No 91
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=2.4e-10 Score=83.44 Aligned_cols=54 Identities=17% Similarity=0.407 Sum_probs=43.3
Q ss_pred CCCCCCccccccccccCc---CceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 30 ELTTPNHFRCPISLDLMK---DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~---~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.........|+||++.|. .++.++|||.||..||.+|+. ...+||.|+..+...
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI--TNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH--HCSBCTTTCSBSCSC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH--cCCCCcCcCccccCc
Confidence 344556689999999885 457789999999999999993 345799999887643
No 92
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.02 E-value=1.5e-10 Score=122.31 Aligned_cols=75 Identities=25% Similarity=0.384 Sum_probs=69.2
Q ss_pred CCCCCCccccccccccCcCceecCCc-chhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHHHHhccc
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTG-ITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDWCVENRS 106 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg-~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 106 (444)
..++|++|.|||+.++|+|||+++.| +||+|.+|++|+ ..+.+||.+++++...++.||..++..|++|+.++..
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl--~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL--LSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH--TTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHH--hcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999997 699999999999 3467899999999999999999999999999998764
No 93
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=7.5e-11 Score=86.41 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=46.3
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.....+.+.|+||++.+.+ ++++|||+||..|+.+|+ .....||.|+..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWS--DRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSS--CCCSSCHHHHHCTTCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHH--HCcCcCCCcCCcccCC
Confidence 3456677899999999999 889999999999999999 5678999999888654
No 94
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=4e-10 Score=83.44 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=44.5
Q ss_pred CCCCCCccccccccccCcCceec---CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTL---STGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.....++..|+||++.|.+|..+ +|||.||+.||.+|+. ....||.|+..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~--~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE--VRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH--HCSBCTTTCCBCSSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH--cCCcCCCcCcccccc
Confidence 34566678999999999988655 9999999999999993 345899999887643
No 95
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.98 E-value=3.4e-10 Score=87.42 Aligned_cols=51 Identities=18% Similarity=0.414 Sum_probs=43.9
Q ss_pred CCCCccccccccccCcC---ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 32 TTPNHFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
...++..|+||++.|.+ ++.++|||.||..||.+|+ +...+||.|+..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl--~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL--QKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHH--TTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHH--HcCCcCcCcCccCCC
Confidence 34566899999999988 7888999999999999999 556799999988754
No 96
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.98 E-value=7e-09 Score=112.76 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=184.8
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
..++..+...+...+...+..|+.+|..+....+. .+.. .+.++.|..++. ++ +.+++..|+.+|..+
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~---d~----~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAG---DE----EPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHT---CC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcC---CC----CHHHHHHHHHHHHHH
Confidence 33444444444445788899999999888754331 1111 246677777663 22 688999999999855
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhh-cccccHHHHHHHhc----------C
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLL-DIEGAIEPLFKLIK----------E 271 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~-~~~g~i~~Lv~ll~----------~ 271 (444)
+...++.-.... .+.++.++..+++.+++++..|+..+..++ .....+..+. .....+|.|+..+. .
T Consensus 243 ~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~-~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 243 LEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLA-EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp HHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHT-TSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred HHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 544443221111 257888888888888999999999999995 3333333220 01256777777762 1
Q ss_pred C-----------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhH
Q 038250 272 P-----------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGR 340 (444)
Q Consensus 272 ~-----------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 340 (444)
+ .+..+++.|+.+|..|+.... ..++ ...++.+.+++.+.+..+++.|+.+|..++......
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~------~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYR------DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHG------GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhcc------HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 1 123468889999999986532 1222 246788888888888999999999999999855432
Q ss_pred HHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHH
Q 038250 341 GDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLK 420 (444)
Q Consensus 341 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~ 420 (444)
..- .-.+.++.++..+...++.++..|+++|.+++...+ .......-.++++.|+..|... ++.+|+.|.+.+.
T Consensus 394 ~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~----~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~ 467 (852)
T 4fdd_A 394 MIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV----SQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFA 467 (852)
T ss_dssp HGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH----HSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 211 124567888887777788999999999999987421 1111112357888899998877 8999999999887
Q ss_pred HHHhh
Q 038250 421 LLNPH 425 (444)
Q Consensus 421 ~l~~~ 425 (444)
.+.+.
T Consensus 468 ~l~~~ 472 (852)
T 4fdd_A 468 TLEEE 472 (852)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 97
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1e-10 Score=81.49 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=40.7
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.+++.|+||.+.|.+|++++|||+||+.|+.+ ....||.|++.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc-----CCCCCCcCCcEeecC
Confidence 45689999999999999999999999999876 356899999887643
No 98
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.98 E-value=1.8e-10 Score=83.81 Aligned_cols=48 Identities=29% Similarity=0.456 Sum_probs=41.4
Q ss_pred CccccccccccCcCc-eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 35 NHFRCPISLDLMKDP-VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 35 ~~~~Cpic~~~~~~P-v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
+...||||.+.+.+| +.++|||+||..|+.+|+ +....||.|+..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWI--RQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHH--HHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHH--hCcCcCcCCChhhHh
Confidence 456899999999997 677999999999999999 344789999988753
No 99
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.95 E-value=2.9e-10 Score=78.90 Aligned_cols=48 Identities=21% Similarity=0.547 Sum_probs=41.7
Q ss_pred CCCccccccccccCcC---ceecC-CcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 33 TPNHFRCPISLDLMKD---PVTLS-TGITYDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~---Pv~~~-cg~~~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
+.++..|+||.+.+.+ ++.++ |||.||..|+.+|+ +...+||.|+..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~--~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--GSHSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT--TTCCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH--HcCCcCcCCCCEe
Confidence 4566899999999998 78886 99999999999999 4567899999865
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.94 E-value=4.6e-09 Score=111.26 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=145.9
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHH-HHHhcCCHHHHHHHHHHHHHHHhc
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMV-WFLKSGDLSRRRNAVLVLREIVSS 247 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~L~s~ 247 (444)
.|.++++.|++. ++..+..|+.+|. ++..+++++..+...|+|..++ .+|...+.++++.|+++|+||+..
T Consensus 35 ~i~Pll~~L~S~-------~~~~r~~A~~al~-~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 35 KILPVLKDLKSP-------DAKSRTTAAGAIA-NIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp TTHHHHHHHSSS-------CCSHHHHHHHHHH-HHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCC-------CHHHHHHHHHHHH-HHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 355677888542 5789999999999 6667888988888888887765 467788999999999999999643
Q ss_pred -chhhHHHhhcccccHHHHHHHhcCC-------------CC-------hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC
Q 038250 248 -DHRKVNVLLDIEGAIEPLFKLIKEP-------------IC-------PTATKASLVVVYRTITSASATEKPIQKFVDMG 306 (444)
Q Consensus 248 -~~~~~~~i~~~~g~i~~Lv~ll~~~-------------~~-------~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g 306 (444)
..+.+..+ ...|++++|..++++. .. .....+++.+|++||.+.+ +....+.+.|
T Consensus 107 ~g~d~~~~l-~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~---~~~~~v~~~~ 182 (684)
T 4gmo_A 107 EEADFCVHL-YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD---EIHEAVATKQ 182 (684)
T ss_dssp SCHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHTCH
T ss_pred cCchHHHHH-HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHHHHHhcc
Confidence 35777777 4579999999998631 00 1244567889999997764 4667788899
Q ss_pred cHHHHHHHhhcc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH--hhcChhHHHHHHHHHHHHcc
Q 038250 307 LVSLLLEMLVDA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI--LRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 307 ~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll--~~~~~~~~~~a~~~L~~L~~ 377 (444)
+++.|+.+|.+. ..+++..|+.+|+.|+.+...-.+.+.+.|....+.-++ .+.+...+..++++|.|+..
T Consensus 183 ~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 183 TILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhh
Confidence 999999999644 356899999999999986655554446666543332222 33455566788899999753
No 101
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.94 E-value=2.9e-10 Score=78.92 Aligned_cols=47 Identities=21% Similarity=0.430 Sum_probs=40.2
Q ss_pred CccccccccccCcC----ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 35 NHFRCPISLDLMKD----PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 35 ~~~~Cpic~~~~~~----Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.+..|+||++.+.+ ++.++|||.||..|+.+|+. . ...||.|+..++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-E-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-H-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH-c-CCcCCCCCCcCC
Confidence 35789999999976 77889999999999999993 3 388999998764
No 102
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=2.3e-10 Score=95.07 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=47.1
Q ss_pred CCccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCc
Q 038250 34 PNHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIP 89 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~ 89 (444)
++++.||||++.|.+| ++++|||+||+.||.+|+ +....||.|++.+....+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHH--TTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHH--HhCCCCCCCCCcCccccccc
Confidence 4578999999999999 889999999999999999 55669999999988665444
No 103
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=3.3e-10 Score=84.15 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=42.6
Q ss_pred CCCccccccccccCcCc---eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 33 TPNHFRCPISLDLMKDP---VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~P---v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
..+...|+||++.|.++ +.++|||.||..||.+|+ +....||.|++.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~--~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--KANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHH--HHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHH--HcCCcCcCcCCcCCC
Confidence 45567999999999988 677999999999999999 335689999988754
No 104
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.91 E-value=3.9e-08 Score=101.66 Aligned_cols=268 Identities=12% Similarity=0.067 Sum_probs=172.5
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
..++..+...+...++.++..|+..|..++..... .......+|.|..++. +. +..++..|+.+|..+..
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~---d~----~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLAS---DE----QDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHT---CS----CHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhc---CC----cHHHHHHHHHHHHHHHH
Confidence 34455444444445788899999999999865332 1223467788887773 22 57888888888873332
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
..++. ......+|.+..++.+.+..+|..|+.+|..++..... +.+ ...+++.++.+++++ ++.++..|+.+
T Consensus 233 ~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~-~~~vr~~a~~~ 304 (588)
T 1b3u_A 233 LLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EIT--KTDLVPAFQNLMKDC-EAEVRAAASHK 304 (588)
T ss_dssp HSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHH--HHTHHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred hCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccc--hhHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 21111 11134688888888888999999999999999543211 112 246789999999987 79999999999
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhH
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLA 364 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~ 364 (444)
|..++..-. ...+....-...+|.+..++.+.+..++..++.+|..++..-. .... ....+|.+..++...++.+
T Consensus 305 l~~~~~~~~--~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~--~~~l~p~l~~~l~d~~~~V 379 (588)
T 1b3u_A 305 VKEFCENLS--ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNT--IEHLLPLFLAQLKDECPEV 379 (588)
T ss_dssp HHHHHHTSC--TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHH--HHHTHHHHHHHHTCSCHHH
T ss_pred HHHHHHHhC--hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHH--HHHHHHHHHHHhCCCchHH
Confidence 999987643 1112222335678889999988889999999999998875221 1111 1246788888777667788
Q ss_pred HHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 365 TEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 365 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
+..++.+|..++...+. . . ....+++.|..++... +.++|..+...+..+.
T Consensus 380 r~~a~~~l~~l~~~~~~--~-~----~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 380 RLNIISNLDCVNEVIGI--R-Q----LSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLA 430 (588)
T ss_dssp HHHHHTTCHHHHHHSCH--H-H----HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--H-H----HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 88888888777653221 1 0 1123444444444433 4445555444444443
No 105
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.85 E-value=7.4e-08 Score=99.56 Aligned_cols=253 Identities=10% Similarity=0.037 Sum_probs=170.5
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
++...+..|+.+|..++...+.. ....-.++.+..+.. +. +..++..|+.++......-.+. ....
T Consensus 99 ~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~---~~----~~~~R~~a~~~l~~~~~~~~~~----~~~~ 164 (588)
T 1b3u_A 99 EETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAG---GD----WFTSRTSACGLFSVCYPRVSSA----VKAE 164 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHT---CS----SHHHHHHHGGGHHHHTTTSCHH----HHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhc---CC----CcHHHHHHHHHHHHHHHhcCHH----HHHH
Confidence 47788999999999998765432 122234555555552 12 4678888888887433332221 1234
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCc
Q 038250 218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEK 297 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 297 (444)
.++.+..++.+.++.+|..|+.+|..++..... .... ...+|.|..+++++ ++.++..|+.+|..++..-.
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~---~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~---- 235 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL-DNVK---SEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLP---- 235 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH-HHHH---HTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSC----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH-HhHH---HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCC----
Confidence 578888888888999999999999999643322 1122 47889999999887 78999999999999987643
Q ss_pred hhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 298 PIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
. . ......++.+..++.+.+..++..++.+|..++..... ... ....++.+++++...+..++..|+.+|..++.
T Consensus 236 ~-~-~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 236 Q-E-DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT--KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp H-H-HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH--HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred H-H-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc--hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 1 1 23345788888888888889999999999999863211 111 13468889998887788899999999999987
Q ss_pred ccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 378 NEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 378 ~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
..+.. ......-..+++.+..++++. +..+|+.++..+..+
T Consensus 311 ~~~~~---~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 311 NLSAD---CRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGL 351 (588)
T ss_dssp TSCTT---THHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGG
T ss_pred HhChh---hhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 54321 011111234556666666555 666666665544443
No 106
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.84 E-value=2.3e-09 Score=86.54 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=41.8
Q ss_pred CccccccccccCcCce------------------ecCCcchhcHHHHHHHHHh---cCCCCCCCCCcccCC
Q 038250 35 NHFRCPISLDLMKDPV------------------TLSTGITYDRENIEKWIHE---DGNITCPVTNRVLTS 84 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv------------------~~~cg~~~c~~ci~~~~~~---~~~~~CP~c~~~~~~ 84 (444)
.+..||||++.|.+|. .++|||.||..||.+|+.. ....+||.|+..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3469999999998875 6799999999999999943 345789999988764
No 107
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.82 E-value=6.1e-08 Score=97.01 Aligned_cols=269 Identities=12% Similarity=0.051 Sum_probs=173.9
Q ss_pred ChhHHHHHHHHHHHHhccCc-ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh-hcccC
Q 038250 139 DQAGCRDLVAKIKKWTKESD-RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT-YLGSA 216 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~-~i~~~ 216 (444)
+...+..|+..|..++.+.. ..-... -...++.++..|.+ . ..+..++..|+.++...+..-.++.. .....
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~---~--~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRK---E--EPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHST---T--CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCC---C--CCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 67788999999999987542 111111 12366677777732 1 01478999999999854433222111 00001
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhccc-ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC-
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLDIE-GAIEPLFKLIKEPICPTATKASLVVVYRTITSAS- 293 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~- 293 (444)
-.++.+...+.+.+.+++..++.+|..++...++. ...+ . ++++.++..+++. ++.++..|+..+..++....
T Consensus 217 ~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~ 292 (462)
T 1ibr_B 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMD 292 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHH
Confidence 13666666777778999999999999997554432 2333 3 7788888888877 78899999999998876420
Q ss_pred -----------CCC--chhHHHHh---cCcHHHHHHHhhcc-------ccchHHHHHHHHHHhcCChhhHHHHhcCCCCh
Q 038250 294 -----------ATE--KPIQKFVD---MGLVSLLLEMLVDA-------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIF 350 (444)
Q Consensus 294 -----------~~~--~~~~~i~~---~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i 350 (444)
+.. .....+++ ...+|.+++.|.+. +..++..|+.+|..|+..-. ..+ . ..++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~-~-~~~~ 368 (462)
T 1ibr_B 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI-V-PHVL 368 (462)
T ss_dssp HHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH-H-HHHH
T ss_pred HHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH-H-HHHH
Confidence 000 00111221 34677777887532 34678899999999886322 122 1 2345
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 351 PVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 351 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
+.+...+.+.+...++.|+.+|..++.... .+..... -..+++.|+.+|.+. .+.+|..|++.+..+...-
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~-l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTT-TTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence 666666666678899999999999997421 1111111 267899999999887 8999999999888887654
No 108
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.82 E-value=3e-07 Score=95.70 Aligned_cols=273 Identities=11% Similarity=0.048 Sum_probs=176.5
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
+.++..+...+...++.++..|+.+|..+...+++ .+.+.|+++.|..+|. +. ++.++..|+.+|..+..
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~---d~----d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIA---DS----NPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTS---CS----CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhC---CC----ChhHHHHHHHHHHHHHh
Confidence 34344444444445889999999999999986554 3445678899999993 33 68999999999995554
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
.+++....-...+.++.|+..|...++-.+.....+|..++..+++. . ..+++.+..++++. ++.++..|+++
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~---~---~~~l~~l~~~l~~~-~~~V~~ea~~~ 262 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE---A---QSICERVTPRLSHA-NSAVVLSAVKV 262 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH---H---HHHHHHHTTCSCSS-TTHHHHHHHHH
T ss_pred hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH---H---HHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 44433211112356788888888888888888888888874333222 1 35678888889887 78999999999
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC-hh------------------h-HHHH-
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS-DY------------------G-RGDA- 343 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~------------------~-~~~i- 343 (444)
+.++...-..+.+....+ -..++++|+.++. .++.++-.|+.+|..++.. ++ . +.++
T Consensus 263 i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~ 340 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD 340 (591)
T ss_dssp HHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHH
Confidence 999874210001123322 2346677887664 6778888888888877631 10 1 1111
Q ss_pred ----hcCCCChHHHHHHHh----hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHH
Q 038250 344 ----YNNSLIFPVIVKKIL----RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHV 415 (444)
Q Consensus 344 ----~~~~g~i~~Lv~ll~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a 415 (444)
+.+...+..++..|. +.+...+..+++++..++...+. . ....++.|+.++... .+.++..+
T Consensus 341 ~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~-----~~~~v~~Ll~ll~~~-~~~v~~e~ 410 (591)
T 2vgl_B 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----S-----AERCVSTLLDLIQTK-VNYVVQEA 410 (591)
T ss_dssp HHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----H-----HHHHHHHHHHHHHTC-CHHHHHHH
T ss_pred HHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----H-----HHHHHHHHHHHHccc-chHHHHHH
Confidence 134444555554443 45778889999999999985321 1 245788899988887 55555555
Q ss_pred HH-HHHHHHhhc
Q 038250 416 SE-LLKLLNPHR 426 (444)
Q Consensus 416 ~~-ll~~l~~~~ 426 (444)
.. +-.++.++.
T Consensus 411 i~~l~~ii~~~p 422 (591)
T 2vgl_B 411 IVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHCc
Confidence 54 444444444
No 109
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=1.6e-09 Score=80.13 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=41.4
Q ss_pred CCCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 32 TTPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
.+.+++.|+||.+.+.+|++++|||+ ||..|+.+| ..||.|+..+..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 34566899999999999999999999 999999887 579999988764
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.70 E-value=7.5e-09 Score=99.71 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=43.7
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
...|+||.+.+.+|+.++|||+||..|+.+|+ ......||.|+..+...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl-~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQ-ESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHH-HHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHH-hcCCCCCCCCCCccCCc
Confidence 37999999999999999999999999999999 44677999999987643
No 111
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=3.3e-09 Score=82.38 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=40.0
Q ss_pred CCccccccccccCcCceec---CCcchhcHHHHHHHHHh---cC---CCCCCC--CCcc
Q 038250 34 PNHFRCPISLDLMKDPVTL---STGITYDRENIEKWIHE---DG---NITCPV--TNRV 81 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~~---~~---~~~CP~--c~~~ 81 (444)
.+.+.||||.+.+.+|+++ +|||+||+.|+.+|+.. .+ ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999999999765 69999999999999853 23 358999 9887
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.67 E-value=2.6e-09 Score=88.58 Aligned_cols=55 Identities=18% Similarity=0.359 Sum_probs=47.0
Q ss_pred CCccccccccccCcCc-------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCcc
Q 038250 34 PNHFRCPISLDLMKDP-------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPN 90 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~P-------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n 90 (444)
++.+.|+||++.+.+| +.++|||+||..||.+|+ +...+||.|+..+...++.+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH--HHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH--HcCCCCCCCCCcCChhcceee
Confidence 5568999999999988 888999999999999999 345699999999887665543
No 113
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.66 E-value=4.8e-07 Score=94.15 Aligned_cols=262 Identities=13% Similarity=0.099 Sum_probs=176.6
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250 124 VFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF 203 (444)
Q Consensus 124 i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l 203 (444)
...+++.+.+ .+...++-+...+..+++.+++.. .-++..|.+-| + +.++.++..|+.+|. .+
T Consensus 51 ~~~vi~l~~s----~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL---~----~~n~~ir~~AL~~L~-~i 113 (591)
T 2vgl_B 51 FPDVVNCMQT----DNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDC---E----DPNPLIRALAVRTMG-CI 113 (591)
T ss_dssp HHHHHHTTSS----SCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGS---S----SSSHHHHHHHHHHHH-TC
T ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHc---C----CCCHHHHHHHHHHHH-cC
Confidence 4456664444 377778777788888876544321 01123333333 2 237889999999998 44
Q ss_pred CCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHH
Q 038250 204 PLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLV 283 (444)
Q Consensus 204 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 283 (444)
. .++.- ...++.+..+|.+.++.+|..|+.+|.++...+++ .+ ...+.++.|..+|.++ ++.++.+|+.
T Consensus 114 ~-~~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~-~~~~~~~~l~~lL~d~-d~~V~~~A~~ 182 (591)
T 2vgl_B 114 R-VDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MV-EDQGFLDSLRDLIADS-NPMVVANAVA 182 (591)
T ss_dssp C-SGGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CH-HHHHHHHHHHHTTSCS-CHHHHHHHHH
T ss_pred C-hHHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hc-ccccHHHHHHHHhCCC-ChhHHHHHHH
Confidence 3 22221 23467899999999999999999999999765544 33 3357899999999877 8999999999
Q ss_pred HHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChh
Q 038250 284 VVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDL 363 (444)
Q Consensus 284 aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~ 363 (444)
+|..++.... .....-...+.+..|+..+.+.++-.+...+.+|..++..++... ...++.+..++.+.+..
T Consensus 183 aL~~i~~~~~---~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~ 254 (591)
T 2vgl_B 183 ALSEISESHP---NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSA 254 (591)
T ss_dssp HHHHHTTSCC---SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTH
T ss_pred HHHHHHhhCC---CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChH
Confidence 9999998764 121111234567888888888888888888888888875432211 12356666666667888
Q ss_pred HHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 364 ATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 364 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+...|++++..+....+. +++.... +-..+.+.|+.++. . ++.+|-.|...+..+...
T Consensus 255 V~~ea~~~i~~l~~~~~~-~~~~~~~-~~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 255 VVLSAVKVLMKFLELLPK-DSDYYNM-LLKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHHSCCSCCB-TTBSHHH-HHHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCC-CHHHHHH-HHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHh
Confidence 999999999998752100 1222332 22455678887664 4 789999998877766554
No 114
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.5e-08 Score=76.13 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=39.0
Q ss_pred CccccccccccCcC--------------ceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 35 NHFRCPISLDLMKD--------------PVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 35 ~~~~Cpic~~~~~~--------------Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
++..|+||++.|.+ ++.+ +|||.|+..||.+|+ +...+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV--KQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT--TTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH--HhCCCCCCcCCCcch
Confidence 34579999999977 4455 599999999999999 455799999987753
No 115
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=7.7e-09 Score=76.59 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=40.9
Q ss_pred CCCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 32 TTPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.+++.+.|+||.+.+.+|+.++|||+ ||..|+.+. ..||.|+..+...
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC------CCCccCCceecCc
Confidence 34566899999999999999999999 999998642 5799999988653
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.57 E-value=3e-08 Score=70.80 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=41.5
Q ss_pred CccccccccccCcCceec--CCcch-hcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 35 NHFRCPISLDLMKDPVTL--STGIT-YDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~--~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
++..|+||.+...+++.+ +|||. ||..|+.+|+ +....||.||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK--KRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH--HTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH--HcCCcCCCcCcchh
Confidence 456899999999999987 99999 8999999999 45678999998775
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.55 E-value=3.1e-06 Score=88.49 Aligned_cols=216 Identities=12% Similarity=0.085 Sum_probs=125.0
Q ss_pred HHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh
Q 038250 128 NCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG 207 (444)
Q Consensus 128 l~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~ 207 (444)
+..+...+...++.++..|+.++..+...+++.. + +.++.+..+|. +. |+.++..|+.+|..+...++
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~-~~~~~l~~lL~---D~----d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----E-MFLPATKNLLN---EK----NHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----G-GGGGGTTTSTT---CC----CHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----H-HHHHHHHHHhC---CC----CHhHHHHHHHHHHHHHHhCh
Confidence 3333333333488899999999999988766432 2 56777777773 22 68999999999996555444
Q ss_pred hhhhhcccCCcHHHHHHHHhc---------------CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC-
Q 038250 208 EGLTYLGSASSMRCMVWFLKS---------------GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE- 271 (444)
Q Consensus 208 ~~~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~- 271 (444)
+....+ ...+|.++.+|.+ .++-.+...+.+|..++..+++.... .++.|..++..
T Consensus 212 ~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~------~~~~L~~l~~~~ 283 (618)
T 1w63_A 212 DMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA------MNDILAQVATNT 283 (618)
T ss_dssp HHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT------THHHHHHHHHTS
T ss_pred HHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH------HHHHHHHHHhcc
Confidence 322222 2568888888764 36778888899999996555443322 23334444321
Q ss_pred --C--CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCC
Q 038250 272 --P--ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNS 347 (444)
Q Consensus 272 --~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 347 (444)
. .+..+.-.|++++..+.... .+.+ .++..|..+|.+.++.++..|+.+|..++... ..+ + .
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~~--------~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~-~-~ 349 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSES--------GLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNA-V-Q 349 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCCH--------HHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHH-H-G
T ss_pred ccccchHHHHHHHHHHHHHhcCCCH--------HHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHH-H-H
Confidence 1 12355556666666543211 1111 35566666666666666666666666665421 112 1 1
Q ss_pred CChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 348 LIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 348 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
...+.++..+...+..++..|+.+|..++.
T Consensus 350 ~~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 350 RHRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 233444444444455566666666666655
No 118
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.53 E-value=7.4e-06 Score=85.61 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=166.1
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
..++..|...+.+.++..+..|+.+|..+... .+. ...++.+.++|.+ . ++.++..|+.++..+..
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------~~~-~~l~~~l~~~L~~---~----~~~VRk~A~~al~~l~~ 171 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS------EMC-RDLAGEVEKLLKT---S----NSYLRKKAALCAVHVIR 171 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH------HHH-HHHHHHHHHHHHS---C----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH------HHH-HHHHHHHHHHHcC---C----CHHHHHHHHHHHHHHHH
Confidence 34455555555455778888888998888632 122 2456777777743 2 68999999999985555
Q ss_pred CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC-------------
Q 038250 205 LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE------------- 271 (444)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~------------- 271 (444)
.+++.. .+.++.+..+|.+.++.++..|+.+|..++..+++....+ ...+|.|+.+|.+
T Consensus 172 ~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 172 KVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp HCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred HChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH---HHHHHHHHHHHHHHHcCCCCcccccc
Confidence 454432 2678888889988899999999999999965444443344 3678888887763
Q ss_pred -CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc------cccchHHHHHHHHHHhcCChhhHHHHh
Q 038250 272 -PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD------AQRSLCEKALSVLDGLCSSDYGRGDAY 344 (444)
Q Consensus 272 -~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~~~~~~i~ 344 (444)
..++-.+...+.+|..++..+. . .....++.|..++.. .+..++-.|+.++..+...+..+.
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~----~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~--- 312 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDD----D----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV--- 312 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCH----H----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH---
T ss_pred CCCCChHHHHHHHHHHHhCCCCH----H----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH---
Confidence 1257778888999999987653 1 112355666666542 245688889999998866443222
Q ss_pred cCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 345 NNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 345 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
.++..|..++.+.++.++..|+.+|..++...| ... ......++..+... +..+|..|..+|-.+
T Consensus 313 ---~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p----~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l 377 (618)
T 1w63_A 313 ---LAINILGRFLLNNDKNIRYVALTSLLKTVQTDH----NAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFAL 377 (618)
T ss_dssp ---HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH----HHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH----HHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHH
Confidence 356788888887888999999999999987422 111 12333444444444 455555555544333
No 119
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.53 E-value=5.7e-08 Score=76.66 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=39.2
Q ss_pred ccccccccccCcCc------------------eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 36 HFRCPISLDLMKDP------------------VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~~P------------------v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
+-.|+||++.|.++ +.++|||.|+..||.+|+ ..+.+||.|++.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl--~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH--TTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH--HcCCcCcCCCCcce
Confidence 45899999999976 335899999999999999 55789999998754
No 120
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.51 E-value=4.9e-08 Score=69.45 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=40.6
Q ss_pred ccccccccccCcCceec--CCcch-hcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 36 HFRCPISLDLMKDPVTL--STGIT-YDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~--~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
...|+||.+...+++.+ +|||. ||..|+.+|+ +....||.||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK--KAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH--HTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH--HhCCcCCCcCchhh
Confidence 45899999999999988 99998 9999999998 34578999999875
No 121
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.48 E-value=2.2e-06 Score=92.69 Aligned_cols=276 Identities=9% Similarity=0.045 Sum_probs=171.6
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 125 FEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 125 ~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
+.++..+...+.+.+...+..|+.+|..++.... ...+.. ..+++.|+..+. +. ++.++..++.+|...
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~--~~~~~~~l~~il~~l~~~l~---d~----~~~vr~~a~~~l~~l 438 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD--KVQRTYYVHQALPSILNLMN---DQ----SLQVKETTAWCIGRI 438 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC--HHHHHHHHHHHHHHHHHGGG---CS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHcC---CC----cHHHHHHHHHHHHHH
Confidence 3445555444444577888999999999985432 111211 135566666662 22 688998888888733
Q ss_pred cCCChhhh-hhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-----hhhHHHhhcccccHHHHHHHhcCCC-Ch
Q 038250 203 FPLAGEGL-TYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-----HRKVNVLLDIEGAIEPLFKLIKEPI-CP 275 (444)
Q Consensus 203 l~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-----~~~~~~i~~~~g~i~~Lv~ll~~~~-~~ 275 (444)
...-...- ..-.-...++.|+..|++. +.++..|+++|.+++... ......+ ..+++.|+.++++.. ++
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~ 514 (861)
T 2bpt_A 439 ADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEF 514 (861)
T ss_dssp HHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGG
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcch
Confidence 22111100 0001135678888888765 899999999999996432 1222333 367888899998542 36
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---------------ccchHHHHHHHHHHhcCChhhH
Q 038250 276 TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---------------QRSLCEKALSVLDGLCSSDYGR 340 (444)
Q Consensus 276 ~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---------------~~~~~~~a~~~L~~L~~~~~~~ 340 (444)
.++..++.+|..++.... ......+. ..++.+++.|... ...++..++.+|..++..-..
T Consensus 515 ~vr~~a~~al~~l~~~~~---~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~- 589 (861)
T 2bpt_A 515 NARASAFSALTTMVEYAT---DTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS- 589 (861)
T ss_dssp GHHHHHHHHHHHHHHHCC---GGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-
T ss_pred HHHHHHHHHHHHHHHHcc---hhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 789999999999987764 12222332 3677788777532 345677888899888752211
Q ss_pred HHHh-cCCCChHHHHHHHhhcCh-hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHH
Q 038250 341 GDAY-NNSLIFPVIVKKILRVSD-LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSEL 418 (444)
Q Consensus 341 ~~i~-~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~l 418 (444)
.+. .-...++.++..+...+. .+++.++.++..++...+. ..... -..+++.|+..+... ...++..|..+
T Consensus 590 -~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~----~~~~~-l~~i~~~l~~~l~~~-~~~vr~~a~~~ 662 (861)
T 2bpt_A 590 -SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK----GFEKY-LETFSPYLLKALNQV-DSPVSITAVGF 662 (861)
T ss_dssp -GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG----GGHHH-HHHHHHHHHHHHHCT-TSHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh----hHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 110 011356666776766555 7889999999988874321 11111 234788888888665 77888888887
Q ss_pred HHHHHhh
Q 038250 419 LKLLNPH 425 (444)
Q Consensus 419 l~~l~~~ 425 (444)
+..+.+.
T Consensus 663 l~~l~~~ 669 (861)
T 2bpt_A 663 IADISNS 669 (861)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
No 122
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.47 E-value=3.1e-06 Score=91.70 Aligned_cols=277 Identities=12% Similarity=0.049 Sum_probs=175.5
Q ss_pred HHHHHHHHhhcccC--ChhHHHHHHHHHHHHhccCccc-chhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 125 FEINCNITTACKSE--DQAGCRDLVAKIKKWTKESDRN-KRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 125 ~~ll~~L~~~~~~~--~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
..++..+...+..+ +...+..|+.+|..++..-..+ .........++.+..++. + .+.+++..++.+|..
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~---~----~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---C----PDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT---C----SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC---C----CCHHHHHHHHHHHHH
Confidence 34444444433333 4677888999999887532211 011111124555555442 2 257889999998885
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh----------------------hHHHhhccc
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR----------------------KVNVLLDIE 259 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~----------------------~~~~i~~~~ 259 (444)
++....+.-........++.++..+.+.++.++..|+..+..++..... .+..+ .
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 320 (876)
T 1qgr_A 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL---Q 320 (876)
T ss_dssp HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH---H
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH---H
Confidence 5543333211122236788888888778899999999999988532110 00111 3
Q ss_pred ccHHHHHHHhcCC------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHh
Q 038250 260 GAIEPLFKLIKEP------ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGL 333 (444)
Q Consensus 260 g~i~~Lv~ll~~~------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L 333 (444)
..++.++..+... .+...++.|+.+|..++..-. ..++ ..+++.+...+.+.+..+++.|+.+|..+
T Consensus 321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~------~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i 393 (876)
T 1qgr_A 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE------DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393 (876)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG------GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc------HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 5677888887532 245788899999999986532 1222 24667777777778889999999999999
Q ss_pred cCChh--hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHH
Q 038250 334 CSSDY--GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKT 411 (444)
Q Consensus 334 ~~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~ 411 (444)
+.... ..... . ...++.++..+...+..++..|+++|.+++...+.. ....-.-..+++.|+..+... +.+
T Consensus 394 ~~~~~~~~~~~~-~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~l~~~l~~l~~~l~~~--~~v 466 (876)
T 1qgr_A 394 LEGPEPSQLKPL-V-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAE--PRV 466 (876)
T ss_dssp SSSSCHHHHHHH-H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG---TSSTTTHHHHHHHHHHHTTSC--HHH
T ss_pred HcCCCHHHHHHH-H-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchh---cccHHHHHHHHHHHHHHHcCC--HHH
Confidence 97432 22222 1 357888888887778899999999999999854320 000001246777888888653 788
Q ss_pred HHHHHHHHHHHHhh
Q 038250 412 KEHVSELLKLLNPH 425 (444)
Q Consensus 412 k~~a~~ll~~l~~~ 425 (444)
++.|.+++..+...
T Consensus 467 ~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 467 ASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988877777654
No 123
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.47 E-value=9e-06 Score=88.08 Aligned_cols=268 Identities=12% Similarity=0.059 Sum_probs=171.4
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh-hccc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT-YLGS 215 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~-~i~~ 215 (444)
+...+..++..|..++..... ..+.. ...++.+.+.+.+ + +.+..++..|+.+|...+..-..+-. ....
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~---~--~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 215 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRK---E--EPSNNVKLAATNALLNSLEFTKANFDKESER 215 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHST---T--CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcC---C--CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 667888999999999865321 11211 2345555555532 1 01477899999999854432222110 0001
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC-
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS- 293 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~- 293 (444)
...++.+...+.+.+.+++..++.+|..++...++. ...+ . ..+++.++..+.+. ++.++..|+..+.+++....
T Consensus 216 ~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHh
Confidence 125777777777778999999999999997554432 3334 2 27788888888776 78899999999988875420
Q ss_pred -----------------CCCchhHHHHhcCcHHHHHHHhhc-------cccchHHHHHHHHHHhcCChhhHHHHhcCCCC
Q 038250 294 -----------------ATEKPIQKFVDMGLVSLLLEMLVD-------AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLI 349 (444)
Q Consensus 294 -----------------~~~~~~~~i~~~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~ 349 (444)
.......... ...++.+++.|.. .+..++..|..+|..|+..... .+ . ...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~-~-~~~ 367 (876)
T 1qgr_A 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-V-PHV 367 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG-H-HHH
T ss_pred HhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hh-H-HHH
Confidence 0000001111 3467788888852 2456888999999988763221 11 1 134
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
++.+...+.+.+..+++.|+.+|..++...+ ++.... .-..+++.|+..+... .+.+|..|++++..+....
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~---~~~~~~-~~~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---HHHHHH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCC---HHHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhC
Confidence 4555555555678899999999999997432 122222 2356889999999877 8999999999888887653
No 124
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.45 E-value=3.3e-06 Score=84.26 Aligned_cols=262 Identities=7% Similarity=0.035 Sum_probs=165.5
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC-hhhhhhcccCC
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA-GEGLTYLGSAS 217 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~-~~~~~~i~~~g 217 (444)
+... ..+...|..++...-.... -.+.++.|+..+.+.+ . +..+++.|+.+|..++... .+.-... -..
T Consensus 103 ~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~-~----~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ 172 (462)
T 1ibr_B 103 TYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPN-S----TEHMKESTLEAIGYICQDIDPEQLQDK-SNE 172 (462)
T ss_dssp CSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTT-C----CHHHHHHHHHHHHHHHHHSCGGGTGGG-HHH
T ss_pred Cchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCC-C----CHHHHHHHHHHHHHHHHhCCchhhHhH-HHH
Confidence 4556 6777888888765321111 1468888988885310 0 3678899999988444321 1111111 134
Q ss_pred cHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcchhhHH-HhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250 218 SMRCMVWFLKSG--DLSRRRNAVLVLREIVSSDHRKVN-VLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 218 ~i~~Lv~lL~~~--~~~~~~~A~~~L~~L~s~~~~~~~-~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 294 (444)
.++.++..|.+. +..+|..|+.++.++.....+.-. .. ...-+++.|...+.++ ++.++..++.+|..++....
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~- 249 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES-ERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYY- 249 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHH-HHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCG-
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHH-
Confidence 678888899887 799999999999997432221111 00 0112466666777666 78999999999999987643
Q ss_pred CCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcC--------------------CCChHHHH
Q 038250 295 TEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNN--------------------SLIFPVIV 354 (444)
Q Consensus 295 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--------------------~g~i~~Lv 354 (444)
+.-...+..+.++.++..+.+.++.++..|+..+..++...........+ ...+|.++
T Consensus 250 --~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 250 --QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp --GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 11111222267888888888888899999999999887643111111000 12345555
Q ss_pred HHHhhc-------ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 355 KKILRV-------SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 355 ~ll~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
+.|... +...+..|..+|..|+...+ + .+-..+++.+...+++. +...|+.|..++..+..
T Consensus 328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~----~----~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----D----DIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT----T----THHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSS
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHhcc----H----HHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence 555321 23577889999999887532 1 11235667777788776 88999999888888774
No 125
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.41 E-value=3e-06 Score=95.72 Aligned_cols=274 Identities=10% Similarity=0.044 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 038250 121 SVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLT 200 (444)
Q Consensus 121 ~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~ 200 (444)
+..+..++..+.+. |.+.+..|+..|.+....+...-..-.....++.|++.|. +. +..++..|+.+|.
T Consensus 5 ~~~l~~lL~~l~s~----d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~----~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 5 SYHISNLLEKMTSS----DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DK----NGEVQNLAVKCLG 73 (1230)
T ss_dssp CHHHHHHHHHTTCS----SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CS----SHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcCCC----CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHH
Confidence 35677888888776 8889999999998877543211111112245677777773 22 6889999999988
Q ss_pred hhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh------HHHhhcccccHHHHHHHhcCCCC
Q 038250 201 LLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK------VNVLLDIEGAIEPLFKLIKEPIC 274 (444)
Q Consensus 201 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~------~~~i~~~~g~i~~Lv~ll~~~~~ 274 (444)
.+...-.+. .+ ...++.|+..|.+++..+|..|+.+|..++...... .... ...++|.|+..+.+..+
T Consensus 74 ~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~~ 147 (1230)
T 1u6g_C 74 PLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQED 147 (1230)
T ss_dssp HHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSC
T ss_pred HHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH--HHHHHHHHHHHHcCCCc
Confidence 544332221 11 245777888888888899999999999996433221 1112 24689999999984327
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHH
Q 038250 275 PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIV 354 (444)
Q Consensus 275 ~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 354 (444)
+.++..|+.+|..++.... ...... -...++.|+..|.+.+..+++.|+.+|..++..... .+ . ...++.++
T Consensus 148 ~~~~~~al~~l~~~~~~~~--~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~-~-~~~l~~l~ 219 (1230)
T 1u6g_C 148 VSVQLEALDIMADMLSRQG--GLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV-F-VDLIEHLL 219 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTC--SSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhH--hHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HH-H-HHHHHHHH
Confidence 8999999999999986432 001111 134677788888887889999999999999974332 22 2 34688888
Q ss_pred HHHhhcC-hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 355 KKILRVS-DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 355 ~ll~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
..+.... ...+..++.+|..++...+. .... .-..+++.++..++.. ++.+|+.|...+..+.+.
T Consensus 220 ~~L~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 220 SELSKNDSMSTTRTYIQCIAAISRQAGH----RIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHTCSSCSCTTHHHHHHHHHHHSSG----GGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHC
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHhHH----HHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 8887643 35667788888888774321 1110 1257889999998876 788999988877776653
No 126
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.39 E-value=5e-08 Score=72.81 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=40.3
Q ss_pred CCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 33 TPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
++++..|+||.+.+.+|+.++|||. ||..|+.+|. .||.|+..+..
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence 4556799999999999999999999 9999988754 79999988764
No 127
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.1e-07 Score=67.18 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=39.6
Q ss_pred CCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 33 TPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
-.+...|+||++...+++.++|||. ||..|+.. ...||.|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 3446799999999999999999999 99999884 2579999988764
No 128
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.36 E-value=2.2e-05 Score=69.51 Aligned_cols=200 Identities=17% Similarity=0.131 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhh
Q 038250 123 EVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLL 202 (444)
Q Consensus 123 ~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~ 202 (444)
.+..+++.|.. .|+..+.+|+..|.++.+.-+..-....-...++.++.++++ . |..+.-.|+.+|..+
T Consensus 34 ~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~---~----dEkval~A~r~L~~L 102 (265)
T 3b2a_A 34 ALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ---E----NEKVTIKALRALGYL 102 (265)
T ss_dssp HHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS---T----THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc---c----chhHHHHHHHHHHHH
Confidence 34444555544 488999999999999998844333333333457899998843 2 678889999999877
Q ss_pred cCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHH
Q 038250 203 FPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASL 282 (444)
Q Consensus 203 l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~ 282 (444)
+..-+-....+. -.+..|..++++++.-.++.|+..|..+ ...... .+++..|+.++.+. +.+++..++
T Consensus 103 Le~vpL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~-------~~V~~~l~sLl~Sk-d~~vK~agl 171 (265)
T 3b2a_A 103 VKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDS-------KLVRTYINELVVSP-DLYTKVAGF 171 (265)
T ss_dssp HTTCCBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCC-------HHHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HcCCCCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccch-------HHHHHHHHHHHhCC-ChhHHHHHH
Confidence 776553333332 3467888899999999999999999999 333222 34556788888666 899999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHH
Q 038250 283 VVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKI 357 (444)
Q Consensus 283 ~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll 357 (444)
.+|.+++.... +.++.. +++.-+-.+|.+.|+.+++.|+.+|..+...+ .-+..++.+.+++
T Consensus 172 ~~L~eia~~S~-D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p-------i~~~~~~~~~~~~ 233 (265)
T 3b2a_A 172 CLFLNMLNSSA-DSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP-------LLENVKIELLKIS 233 (265)
T ss_dssp HHHHHHGGGCS-SCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC-------CCSCCHHHHHHHH
T ss_pred HHHHHhhcccC-CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc-------ccHhHHHHHHHHH
Confidence 99999998764 111222 34555778888889999999999999998854 2245566665554
No 129
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.33 E-value=4.4e-05 Score=82.47 Aligned_cols=283 Identities=12% Similarity=0.059 Sum_probs=173.7
Q ss_pred HHHHHHHHhhcccC-ChhHHHHHHHHHHHHhccCcccchhHh--hcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 125 FEINCNITTACKSE-DQAGCRDLVAKIKKWTKESDRNKRCIV--DNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 125 ~~ll~~L~~~~~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.++..|...+.++ +...+..|+..|..++..-....+.+. ....++.++..+.+ . ..+..++..|+.+|..
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~---~--~~~~~vr~~al~~l~~ 207 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS---T--ETSKAVRLAALNALAD 207 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST---T--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcC---C--CCCHHHHHHHHHHHHH
Confidence 34555554444444 778889999999999875322110011 11244555555531 1 1157899999999885
Q ss_pred hcCCChhhhh-hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHhcCCCChHHHH
Q 038250 202 LFPLAGEGLT-YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEPICPTATK 279 (444)
Q Consensus 202 ~l~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 279 (444)
.+..-..+-. .......++.|...+.+++.+++..|+.+|..++...++ ....+ . ..+++.+...+.+. ++.++.
T Consensus 208 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~-~~l~~~~~~~~~~~-~~~vr~ 284 (861)
T 2bpt_A 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-E-QALYALTIATMKSP-NDKVAS 284 (861)
T ss_dssp HGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-H-HTHHHHHHHHTTCS-SHHHHH
T ss_pred HHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHcCC-cHHHHH
Confidence 4322221100 000122567777777788999999999999999654332 22233 1 15677777778776 789999
Q ss_pred HHHHHHHHHhcCCCC--------------CCchhHHHHhcCcHHHHHHHhhcc-------ccchHHHHHHHHHHhcCChh
Q 038250 280 ASLVVVYRTITSASA--------------TEKPIQKFVDMGLVSLLLEMLVDA-------QRSLCEKALSVLDGLCSSDY 338 (444)
Q Consensus 280 ~a~~aL~~L~~~~~~--------------~~~~~~~i~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~ 338 (444)
.|+..+..++..... .......++ ...++.++..|... +..++..+..+|..|+..-.
T Consensus 285 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~ 363 (861)
T 2bpt_A 285 MTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc
Confidence 999999988765210 000111112 45788888888742 23578889999998886322
Q ss_pred hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHH
Q 038250 339 GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSEL 418 (444)
Q Consensus 339 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~l 418 (444)
. .+ . ...++.+...+.+.+...++.|+.+|..++.... .+.....+ ..+++.|+..+... ++.+|..+.++
T Consensus 364 ~--~~-~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~---~~~~~~~l-~~il~~l~~~l~d~-~~~vr~~a~~~ 434 (861)
T 2bpt_A 364 N--HI-L-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD---KVQRTYYV-HQALPSILNLMNDQ-SLQVKETTAWC 434 (861)
T ss_dssp G--GG-H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---HHHHHHHH-HHHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred H--hH-H-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC---HHHHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 1 11 0 1234444444445577889999999999997421 12332222 35788888888777 89999999887
Q ss_pred HHHHHhh
Q 038250 419 LKLLNPH 425 (444)
Q Consensus 419 l~~l~~~ 425 (444)
+..+...
T Consensus 435 l~~l~~~ 441 (861)
T 2bpt_A 435 IGRIADS 441 (861)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 130
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.29 E-value=9.8e-06 Score=73.99 Aligned_cols=188 Identities=12% Similarity=0.078 Sum_probs=135.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 220 RCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK-EPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
+.+...+.+.++..|..|+..|..+....+..... ....+++.|..++. +. +..++..|+.+|..|+..-. ..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~---~~ 91 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLA---KR 91 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHG---GG
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHh---hh
Confidence 34778888899999999999999996553321111 12356788888885 66 89999999999999996532 11
Q ss_pred hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
-...+ ...++.|++.+.+.+..+++.|..+|..++.... -. ..++.+...+...++.+++.++..|..+...
T Consensus 92 ~~~~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 92 FSNYA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp GHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 11222 2389999999999999999999999999987432 11 2356777777777889999999999995443
Q ss_pred c-ccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 379 E-EREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 379 ~-~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
. +. .....-+ ...++.|+.+|... ...+|+.|...+..+...-
T Consensus 164 ~~~~---~~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 164 TQPT---ALNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CCGG---GCCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHH
T ss_pred cCCC---CccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2 21 0111111 36788999999777 8999999999887776553
No 131
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.1e-06 Score=65.49 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=42.7
Q ss_pred CCccccccccccC--cCceecCCc-----chhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 34 PNHFRCPISLDLM--KDPVTLSTG-----ITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 34 ~~~~~Cpic~~~~--~~Pv~~~cg-----~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.+...|.||++.+ .+|++++|+ |.|...||.+|+...+..+||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3446899999877 468888996 999999999999655667999999988643
No 132
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.26 E-value=3.1e-05 Score=68.60 Aligned_cols=184 Identities=12% Similarity=0.118 Sum_probs=140.9
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
+.+..|..+|+..+..++.++..+|..+.+.-+ ..+..+ . ..+++.++.++++. +..+.-.|+.+|..|-.+.+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~-e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vp-- 107 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-L-ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVP-- 107 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCC--
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-H-HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCC--
Confidence 467889999999999999999999999976532 233333 2 57899999999988 89999999999999988764
Q ss_pred CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHH
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKL 375 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L 375 (444)
-....+.. ++.+|.+++.++++-+.+.++..|..|-- .. ...+++..+.+++.+.+..++..|+.+|.++
T Consensus 108 -L~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv-~~------~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 108 -MGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQP-LE------DSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp -BCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCB-SC------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -CCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCc-cc------chHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 23444444 67889999998999999999999999832 11 1123456777888677999999999999999
Q ss_pred ccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 376 CKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
+..+.+ .+.. .+++.-+-+++++. ++.+++.|..++-.+.
T Consensus 178 a~~S~D--~~i~-----~~I~~eI~elL~~e-D~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 178 LNSSAD--SGHL-----TLILDEIPSLLQND-NEFIVELALDVLEKAL 217 (265)
T ss_dssp GGGCSS--CCCG-----GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHT
T ss_pred hcccCC--HHHH-----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 997642 2222 35666677788888 9999999988554443
No 133
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=1.6e-07 Score=90.00 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=40.9
Q ss_pred CCCccccccccccCcCceecCCcch-hcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 33 TPNHFRCPISLDLMKDPVTLSTGIT-YDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~~cg~~-~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
+.+++.|+||.+.+.+|+.++|||+ ||+.|+.+| ..||.|+..+..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 3566899999999999999999999 999999876 479999988754
No 134
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=1.8e-05 Score=72.30 Aligned_cols=184 Identities=13% Similarity=0.138 Sum_probs=127.7
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC
Q 038250 127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA 206 (444)
Q Consensus 127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~ 206 (444)
+.+.+.+. +...+..|+..|..+....+.....- -...++.|...|. ++. +..++..|+.+|..++..
T Consensus 20 l~~~l~s~----~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~--kd~----~~~V~~~a~~~l~~la~~- 87 (242)
T 2qk2_A 20 FYDKLEEK----KWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVIT--KDS----NVVLVAMAGKCLALLAKG- 87 (242)
T ss_dssp HHHHHTCS----SHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHH--HCS----CHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhccC----CHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhc--cCC----CHHHHHHHHHHHHHHHHH-
Confidence 55666554 88999999999999987633211100 0234566666662 122 688999999998843321
Q ss_pred hhhhhhcc--cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHH
Q 038250 207 GEGLTYLG--SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVV 284 (444)
Q Consensus 207 ~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 284 (444)
.+..+. -...+|.|+..|.+.+..+++.|..+|..+.... . + ..+++.|...|++. ++.++..++..
T Consensus 88 --l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~----~---~~ll~~l~~~l~~~-~~~vr~~~l~~ 156 (242)
T 2qk2_A 88 --LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-S----L---EAQQESIVESLSNK-NPSVKSETALF 156 (242)
T ss_dssp --HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-C----H---HHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred --HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-C----H---HHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 111221 1346889999998889999999999999995422 1 2 24678899999887 89999999999
Q ss_pred HHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 285 VYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 285 L~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
|..+...... +..-..... ..++.|+.+|.+.+..++..|..+|..++.
T Consensus 157 l~~~l~~~~~-~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 157 IARALTRTQP-TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHTTCCG-GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 9996544310 001112222 589999999999999999999999999875
No 135
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.14 E-value=3.1e-07 Score=73.46 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=0.0
Q ss_pred cccccccccCcCc-----------------ee-cCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDP-----------------VT-LSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~P-----------------v~-~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|+||++.|.+| +. ++|||.|+..||.+|+ ..+.+||.|++++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl--~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH--HcCCcCCCCCCeee
Confidence 4899999999874 22 4899999999999999 45778999998753
No 136
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=2.3e-07 Score=76.45 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=64.3
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
...++.|+.+|++.++.+|..|+++|..+ .. ..++.|+.+|+++ ++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~-~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRM-GD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSC-SS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHh-Cc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-----
Confidence 34566666666666666666666666544 11 0146666666655 56666666666655531
Q ss_pred CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHH
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILW 373 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~ 373 (444)
..+++.|+.+|.+.+..++..|+++|..+.. ..+++.|++++.+.+..++..|+.+|.
T Consensus 72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1246666666666666677777777766542 223556666665555666666666554
No 137
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.10 E-value=0.00029 Score=73.52 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=155.8
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
.++.++..|+.++.++.+.+++ .+...+.++.|.++|. +. |+.++..|+.++..++..+++. + ..
T Consensus 160 ~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL~---d~----d~~V~~~a~~~l~~i~~~~~~~---~--~~ 224 (621)
T 2vgl_A 160 TMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLLN---DQ----HLGVVTAATSLITTLAQKNPEE---F--KT 224 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHTT---CS----CHHHHHHHHHHHHHHHHHCHHH---H--TT
T ss_pred CCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHhC---CC----CccHHHHHHHHHHHHHHhChHH---H--HH
Confidence 4788899999999999886553 2333588999999994 23 6889999999988554433331 1 13
Q ss_pred cHHHHHHHHh----cC-------------CHHHHHHHHHHHHHHHhc-chhhHHHhhcccccHHHHHHHhcCCC------
Q 038250 218 SMRCMVWFLK----SG-------------DLSRRRNAVLVLREIVSS-DHRKVNVLLDIEGAIEPLFKLIKEPI------ 273 (444)
Q Consensus 218 ~i~~Lv~lL~----~~-------------~~~~~~~A~~~L~~L~s~-~~~~~~~i~~~~g~i~~Lv~ll~~~~------ 273 (444)
.++.++..|. .+ ++-.|.....+|..++.. +++.++.+ ...+..++..+.+..
T Consensus 225 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l---~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 225 SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL---TECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHH---HHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHhhccCccccccc
Confidence 4555555543 22 466777788888887432 34555544 234555554432210
Q ss_pred --C--hHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCC
Q 038250 274 --C--PTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLI 349 (444)
Q Consensus 274 --~--~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~ 349 (444)
+ ..+.-.++.++..+... .. +.. .++..|..+|.+.++.++-.++..|..++........+ ...
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~~~-------~~-~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~---~~~ 369 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHDSE-------PN-LLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV---KTH 369 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC-------HH-HHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH---HTT
T ss_pred ccchHHHHHHHHHHHHHhcCCc-------HH-HHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH---HHH
Confidence 2 26677777777777522 11 111 36778888888888899999999999998754222222 245
Q ss_pred hHHHHHHHh-hcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 038250 350 FPVIVKKIL-RVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 422 (444)
Q Consensus 350 i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l 422 (444)
...++..+. ..+..++..|+.+|..++. +.+.. .++..|...+... +...++.+...+..+
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~------~~Nv~-----~Iv~eL~~yl~~~-d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD------RSNAQ-----QIVAEMLSYLETA-DYSIREEIVLKVAIL 431 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC------HHHHH-----HHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC------hhhHH-----HHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 667777777 6678888999999999887 33333 3455666766665 566666655533333
No 138
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.02 E-value=5.6e-05 Score=69.43 Aligned_cols=197 Identities=11% Similarity=0.025 Sum_probs=133.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-HHhcchhhHHHhhcccccHHHHHHHh-cCCCChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250 222 MVWFLKSGDLSRRRNAVLVLRE-IVSSDHRKVNVLLDIEGAIEPLFKLI-KEPICPTATKASLVVVYRTITSASATEKPI 299 (444)
Q Consensus 222 Lv~lL~~~~~~~~~~A~~~L~~-L~s~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~ 299 (444)
+-..|.+.++..|..|+..|.. +..+.++....-+....++..|...+ ++. +..++..|+.+|..|+.+-.. +...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~-~~f~ 98 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKT-PGFS 98 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCT-TTSC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccc-cccc
Confidence 4556788899999999999999 85443332210112135677888888 555 789999999999999964210 0011
Q ss_pred -HHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhc-CCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 300 -QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYN-NSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 300 -~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
..... .++.+++.+.+....+++.+..+|..++..-+. ..... -...++.|+..|.+.+..+++.++.+|..+..
T Consensus 99 ~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 22222 789999999888888999999999888762210 00000 01245667777776788999999999999987
Q ss_pred ccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 378 NEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 378 ~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
..+.. ......-+....++.|..+|... .+.+|+.|...+..+.+.
T Consensus 176 ~~~~~-~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 176 EEKDG-YSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HCCSC-SHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred HcCCc-chhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 54310 02222222368899999999777 899999999988777654
No 139
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.98 E-value=8.6e-05 Score=68.16 Aligned_cols=191 Identities=8% Similarity=0.079 Sum_probs=129.1
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHH-HhccCcccchhHhh-cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC
Q 038250 127 INCNITTACKSEDQAGCRDLVAKIKK-WTKESDRNKRCIVD-NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP 204 (444)
Q Consensus 127 ll~~L~~~~~~~~~~~~~~Al~~L~~-l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~ 204 (444)
+...+.+. +..++.+|+.+|.. ++...+.....-.+ ...+..|...+. ++. +..++..|+.+|..+.
T Consensus 21 f~~~l~s~----~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~--~D~----n~~v~~~A~~al~~la- 89 (249)
T 2qk1_A 21 FQERITSS----KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ--KDA----NIQAVALAAQSVELIC- 89 (249)
T ss_dssp HHHHHTCS----SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHH--HCS----CHHHHHHHHHHHHHHH-
T ss_pred HHHHhhcC----CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhc--cCC----CHHHHHHHHHHHHHHH-
Confidence 34455444 89999999999999 87543322110111 134555556662 122 6788899999998433
Q ss_pred CChhhh-hhcc-c--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHH
Q 038250 205 LAGEGL-TYLG-S--ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKA 280 (444)
Q Consensus 205 ~~~~~~-~~i~-~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 280 (444)
..-+ ..+. . .-.+|.++..++.....+++.+..+|..++...+..... ..-..+++.|+..|++. ++.++..
T Consensus 90 --~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k-~~~vk~~ 165 (249)
T 2qk1_A 90 --DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK-TPQIRME 165 (249)
T ss_dssp --HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS-SHHHHHH
T ss_pred --HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC-ChHHHHH
Confidence 2222 2222 1 235888899888888999999999999886433221111 00135788899999988 8999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHH---HhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 281 SLVVVYRTITSASATEKPIQKF---VDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 281 a~~aL~~L~~~~~~~~~~~~~i---~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
++.+|..++.... .....+ +....+|.|.+++.+.+..+++.|..+|..++.
T Consensus 166 al~~l~~~~~~~~---~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 166 CTQLFNASMKEEK---DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHCC---SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999987653 111222 224689999999999999999999999998864
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.97 E-value=0.00021 Score=67.12 Aligned_cols=183 Identities=13% Similarity=0.128 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
-.+..++++|.++ +.++.+.++..|..+-.++..-...++..||+..|+++... + +...+..++++|..
T Consensus 118 ~ra~~iiekL~~~----~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~---~----~gN~q~Y~L~AL~~ 186 (339)
T 3dad_A 118 VRVNAILEKLYSS----SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA---A----DHNYQSYILRALGQ 186 (339)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT---S----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh---c----ChHHHHHHHHHHHH
Confidence 4567889999876 78899999999999555667788899999999999999943 3 57789999999994
Q ss_pred hcCCChhhhhhcc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccc---------cHHHHHHHhc-
Q 038250 202 LFPLAGEGLTYLG-SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEG---------AIEPLFKLIK- 270 (444)
Q Consensus 202 ~l~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g---------~i~~Lv~ll~- 270 (444)
+-.+......++ +...|..+..++.+....+...|..+|..++..++.+...+..... -...|+.+|+
T Consensus 187 -LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~ 265 (339)
T 3dad_A 187 -LMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEE 265 (339)
T ss_dssp -HTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred -HHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhc
Confidence 444555554444 6778999999999888999999999999997666655555422111 2668999997
Q ss_pred -CCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH----hcCcHHHHHHHhhc
Q 038250 271 -EPICPTATKASLVVVYRTITSASATEKPIQKFV----DMGLVSLLLEMLVD 317 (444)
Q Consensus 271 -~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~----~~g~v~~Lv~lL~~ 317 (444)
++.+.+.+.+|...|-.+...-++ .+.+..++ +.|.=..+.+.|..
T Consensus 266 ~~~~D~elq~~amtLIN~lL~~apd-~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 266 KNGADPELLVYTVTLINKTLAALPD-QDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 223788999888877666544320 11123332 34544556665653
No 141
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.94 E-value=1.6e-06 Score=71.35 Aligned_cols=119 Identities=12% Similarity=0.071 Sum_probs=87.4
Q ss_pred cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChh
Q 038250 259 EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDY 338 (444)
Q Consensus 259 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 338 (444)
...++.|+.+|+++ ++.++..|+++|..+ .. . .++.|+++|.+.++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~---~~----~--------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE-NKWVRRDVSTALSRM---GD----E--------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp ----------CCSS-CCCSSSSCCSSTTSC---SS----T--------THHHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred cccHHHHHHHhcCC-CHHHHHHHHHHHHHh---Cc----h--------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence 46788899999887 788888888777644 11 1 26899999999999999999999998763
Q ss_pred hHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHH
Q 038250 339 GRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSEL 418 (444)
Q Consensus 339 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~l 418 (444)
...++.|++.+...+..++..|+++|..+.. ..+++.|+.++++. ++.++..|...
T Consensus 72 --------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~-~~~vr~~A~~a 127 (131)
T 1te4_A 72 --------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETG-TGFARKVAVNY 127 (131)
T ss_dssp --------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSC-CTHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 2347889999988899999999999998875 24678899999766 88899988876
Q ss_pred HH
Q 038250 419 LK 420 (444)
Q Consensus 419 l~ 420 (444)
|.
T Consensus 128 L~ 129 (131)
T 1te4_A 128 LE 129 (131)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 142
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.90 E-value=0.0013 Score=64.97 Aligned_cols=226 Identities=12% Similarity=0.078 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhhcCCChhhhhhcccCC--cHHHHHHHHhc---------------C--CHHHHHHHHHHHHHHHhcchh
Q 038250 190 SVLEEILSTLTLLFPLAGEGLTYLGSAS--SMRCMVWFLKS---------------G--DLSRRRNAVLVLREIVSSDHR 250 (444)
Q Consensus 190 ~~~~~a~~~L~~~l~~~~~~~~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~A~~~L~~L~s~~~~ 250 (444)
..+.-++.+|. .+-..++.|..+.+.+ .++.++.+++. + ..+++-+++.+++-| +.+++
T Consensus 183 ~~~~i~v~~L~-~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~~ 260 (480)
T 1ho8_A 183 DTCYVCIRLLQ-ELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNPV 260 (480)
T ss_dssp HHHHHHHHHHH-HHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSHH
T ss_pred chHHHHHHHHH-HHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHH-HcCHH
Confidence 34556777777 4445788898887543 36777665541 1 255678899999999 77777
Q ss_pred hHHHhhcccccH--HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC-CchhHHH-HhcCcHHHHHHHhhcc---ccchH
Q 038250 251 KVNVLLDIEGAI--EPLFKLIKEPICPTATKASLVVVYRTITSASAT-EKPIQKF-VDMGLVSLLLEMLVDA---QRSLC 323 (444)
Q Consensus 251 ~~~~i~~~~g~i--~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~-~~~~~~i-~~~g~v~~Lv~lL~~~---~~~~~ 323 (444)
..+.+ ...+.+ +.|+.+++....+.+.+-++.+|+|+......+ ......+ +..++ +++++.|... |+++.
T Consensus 261 ~~~~l-~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ 338 (480)
T 1ho8_A 261 FANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELR 338 (480)
T ss_dssp HHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHH
T ss_pred HHHHH-HhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHH
Confidence 77778 444544 678888887756899999999999998765200 0122223 33344 5677777632 66665
Q ss_pred HHHHHHHHHh-------cCChhhHHHHh-----------------------cC--CCChHHHHHHHhh----------cC
Q 038250 324 EKALSVLDGL-------CSSDYGRGDAY-----------------------NN--SLIFPVIVKKILR----------VS 361 (444)
Q Consensus 324 ~~a~~~L~~L-------~~~~~~~~~i~-----------------------~~--~g~i~~Lv~ll~~----------~~ 361 (444)
+..-.+...| +..++...++. .+ -..+..|+++|.+ .+
T Consensus 339 edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d 418 (480)
T 1ho8_A 339 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 418 (480)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCC
Confidence 5443333333 22233222220 11 1267889998874 24
Q ss_pred hhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 362 DLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 362 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
+.+...|+.=++.++++.|.| +..+-+-|+=..++++|... ++.+|..|...++.+-.
T Consensus 419 ~~~laVAc~Digefvr~~P~g----r~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 419 KIIIQVALNDITHVVELLPES----IDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHCTTH----HHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred cceEEeecccHHHHHHHCcch----hHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 566788999999999988753 33333689989999999988 99999999887665543
No 143
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.89 E-value=0.0023 Score=66.69 Aligned_cols=263 Identities=10% Similarity=0.052 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHh
Q 038250 122 VEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTL 201 (444)
Q Consensus 122 ~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~ 201 (444)
+.+.-++..+...+.+.++..+--|+..|..+.. ++ +.+ ..++.+.++|.+ . +.++-|+..|+-++..
T Consensus 107 e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~-~----d~~~~VRK~A~~al~k 174 (621)
T 2vgl_A 107 ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVA-G----DTMDSVKQSAALCLLR 174 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHC-S----SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhC-C----CCCHHHHHHHHHHHHH
Confidence 3344445555555544577788888888888753 22 222 356777777732 1 2268899999888885
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc----CC-C---
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK----EP-I--- 273 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~----~~-~--- 273 (444)
+...+++ .+...+.++.|..+|.+.++.++..|+.+|..++..+++. + ...+|.+++.|. .+ .
T Consensus 175 l~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~---~~~~~~~~~~L~~ll~~~~~~~~ 245 (621)
T 2vgl_A 175 LYRTSPD---LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F---KTSVSLAVSRLSRIVTSASTDLQ 245 (621)
T ss_dssp HHHHCGG---GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H---TTHHHHHHHHHHHHHHCCSSSCS
T ss_pred HHHhChh---hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H---HHHHHHHHHHHHHHHhCCCCCcc
Confidence 5554443 3333589999999998889999999999999997555432 2 134455554433 22 1
Q ss_pred --------ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------cc--ccchHHHHHHHHHHhc
Q 038250 274 --------CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------DA--QRSLCEKALSVLDGLC 334 (444)
Q Consensus 274 --------~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------~~--~~~~~~~a~~~L~~L~ 334 (444)
++-.+-..+..|..++..++ .+....+.+ .++.++..+. +. ...+.-.|+.++..+.
T Consensus 246 ~~~~~~~~~~w~qi~il~ll~~~~~~~d--~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~ 321 (621)
T 2vgl_A 246 DYTYYFVPAPWLSVKLLRLLQCYPPPED--PAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD 321 (621)
T ss_dssp TTEETTEESHHHHHHHHHHGGGSSSCSS--HHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhcCCCCchHHHHHHHHHHHhCCCCC--HHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC
Confidence 35566666777766665322 123333333 3444443321 11 2367788888888887
Q ss_pred CChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHh-cCCChHHHH
Q 038250 335 SSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQ-VGCADKTKE 413 (444)
Q Consensus 335 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~-~~~~~~~k~ 413 (444)
..++.... ++..|..++.+.++.++..|+..|..++...++ .. ++ ......++..+. +. +..+|.
T Consensus 322 ~~~~~~~~------~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~----~~-~~~~~~i~~~L~~d~-d~~Ir~ 387 (621)
T 2vgl_A 322 SEPNLLVR------ACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HE----AV-KTHIETVINALKTER-DVSVRQ 387 (621)
T ss_dssp CCHHHHHH------HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HH----HH-HTTHHHHHHHHTTCC-CHHHHH
T ss_pred CcHHHHHH------HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HH----HH-HHHHHHHHHHhccCC-CHhHHH
Confidence 54443333 356788877777889999999999999986431 11 22 345677778787 55 788998
Q ss_pred HHHHHHHHHH
Q 038250 414 HVSELLKLLN 423 (444)
Q Consensus 414 ~a~~ll~~l~ 423 (444)
.|..+|-.+.
T Consensus 388 ~aL~lL~~l~ 397 (621)
T 2vgl_A 388 RAVDLLYAMC 397 (621)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 8888665543
No 144
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.87 E-value=3e-05 Score=87.52 Aligned_cols=220 Identities=12% Similarity=0.049 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFK 267 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ 267 (444)
|.+++..|+..|...+..+...-..-.....++.|+..|.+.++.+|..|+.+|..++....+ ..+ ..+++.|+.
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~---~~i~~~Ll~ 93 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV---ETIVDTLCT 93 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH---HHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH---HHHHHHHHH
Confidence 688999998888744432211000001125678888999888999999999999999654333 222 356788898
Q ss_pred HhcCCCChHHHHHHHHHHHHHhcCCCCCCch----hHHHHhcCcHHHHHHHhh-ccccchHHHHHHHHHHhcCChhhHHH
Q 038250 268 LIKEPICPTATKASLVVVYRTITSASATEKP----IQKFVDMGLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDYGRGD 342 (444)
Q Consensus 268 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~----~~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~ 342 (444)
.+.++ ++.++..|+.+|..++..-. ... ...-.-...+|.|++.+. +.+..+++.|+.+|..++..... .
T Consensus 94 ~l~d~-~~~vR~~a~~~L~~i~~~l~--~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~ 168 (1230)
T 1u6g_C 94 NMLSD-KEQLRDISSIGLKTVIGELP--PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--L 168 (1230)
T ss_dssp HTTCS-SSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--S
T ss_pred HhcCC-cHHHHHHHHHHHHHHHHhCC--CcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--H
Confidence 88877 67889999999999886543 110 011123458999999998 46788999999999998841100 0
Q ss_pred Hh-cCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038250 343 AY-NNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 421 (444)
Q Consensus 343 i~-~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~ 421 (444)
+. .....++.|+..+...+..+++.|+.+|..++...+. . . -...++.|+..|....+...+..+...+..
T Consensus 169 l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~-~----~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 169 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---I-V----FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---H-H----HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 10 0012344455545555778999999999999985321 1 1 245688888877766334556666666655
Q ss_pred HHhh
Q 038250 422 LNPH 425 (444)
Q Consensus 422 l~~~ 425 (444)
+.+.
T Consensus 241 l~~~ 244 (1230)
T 1u6g_C 241 ISRQ 244 (1230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 145
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=1.2e-05 Score=58.60 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=38.5
Q ss_pred cccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||.+++..-... .|+|.|...||.+||+.++..+||.|+....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4899999999854444 7999999999999994444589999998765
No 146
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.83 E-value=0.0054 Score=65.78 Aligned_cols=242 Identities=14% Similarity=0.035 Sum_probs=130.8
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcc--cccccchHHHHHHHHHHHhhcCCChhhhhhccc
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSK--TCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS 215 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~--~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~ 215 (444)
+++..+..|+-+|..+..... . .++..|...|.+.+. +. ..+..++..|+-.|.....++. +
T Consensus 407 ~~~~ik~GAllaLGli~ag~~---~-----~~~~lL~~~L~~~~~~~~~-~~~~~ir~gAaLGLGla~~GS~-------~ 470 (963)
T 4ady_A 407 SSRFIKGGSLYGLGLIYAGFG---R-----DTTDYLKNIIVENSGTSGD-EDVDVLLHGASLGIGLAAMGSA-------N 470 (963)
T ss_dssp SCHHHHHHHHHHHHHHTTTTT---H-----HHHHHHHHHHHHHSSCCSC-HHHHHHHHHHHHHHHHHSTTCC-------C
T ss_pred CcHHHHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHcCccccccc-cccHHHHHHHHHHHHHHhcCCC-------C
Confidence 355566777777777654422 1 146667777753210 00 0013456566666663222211 1
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
..+++.|..+|...+...++.|+.+|+.+-.+ ..+.+ ++..|++.+.+..+..+++.++.+|..+..+.+
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vG-Tgn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~-- 540 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLG-TGKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ-- 540 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG--
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc-cCCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh--
Confidence 23467777777777666667777777765111 11111 112222222222133444444444444433322
Q ss_pred CchhHH-----------HHhc----------------CcHHHHHHHhh-ccccchHHHHHHHHHHhcCChhhHHHHhcCC
Q 038250 296 EKPIQK-----------FVDM----------------GLVSLLLEMLV-DAQRSLCEKALSVLDGLCSSDYGRGDAYNNS 347 (444)
Q Consensus 296 ~~~~~~-----------i~~~----------------g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 347 (444)
+.... +++. .+|+.|+..+. +.+..++..|+.+|+.+.... .
T Consensus 541 -e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~---------~ 610 (963)
T 4ady_A 541 -ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD---------Y 610 (963)
T ss_dssp -GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---------C
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---------H
Confidence 00000 0011 13555666665 345667888888888776532 2
Q ss_pred CChHHHHHHHhh-cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 348 LIFPVIVKKILR-VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 348 g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
..++.+++++.. .++.++..|+.+|+.++..++. ..++..|..++... ++.+++.|...|.++..-.
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-----------~~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-----------QSAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-----------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-----------HHHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCC
Confidence 456777776654 5888999999999999875542 23455555555544 8889999988888876443
Q ss_pred c
Q 038250 427 A 427 (444)
Q Consensus 427 ~ 427 (444)
+
T Consensus 679 n 679 (963)
T 4ady_A 679 T 679 (963)
T ss_dssp C
T ss_pred c
Confidence 3
No 147
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.80 E-value=0.00059 Score=64.13 Aligned_cols=144 Identities=15% Similarity=0.107 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHH-HhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHH
Q 038250 274 CPTATKASLVVVYR-TITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPV 352 (444)
Q Consensus 274 ~~~~~~~a~~aL~~-L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~ 352 (444)
+.+.++.++.-|.. +..+.. ....+++.||+..|++++.+++...+..++.+|.+|-.+.++-..++.+...|..
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~----Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ 206 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKD----LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQW 206 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTT----HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhcchH----HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHH
Confidence 46677778888887 444554 8999999999999999999999999999999999999999988888667778888
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHh-----h--ChHHHHHHHHh---cCCChHHHHHHHHHHHHH
Q 038250 353 IVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQ-----V--GAFQKLLLLLQ---VGCADKTKEHVSELLKLL 422 (444)
Q Consensus 353 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~-----~--g~l~~Ll~ll~---~~~~~~~k~~a~~ll~~l 422 (444)
++.++.+....+.+.|+++|..++.++++. ......++. . --+..|+.+|+ ++ +..++-+|..|++-+
T Consensus 207 lyslv~s~~~~V~k~AL~LL~v~V~~se~~-~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~amtLIN~l 284 (339)
T 3dad_A 207 LYTLCASLSRLVVKTALKLLLVFVEYSENN-APLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DPELLVYTVTLINKT 284 (339)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHHHHHHHHHH
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHccCccc-chHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHHHHHHHHHH
Confidence 888877667788899999999999886542 222222221 1 23779999998 44 889999999977765
Q ss_pred H
Q 038250 423 N 423 (444)
Q Consensus 423 ~ 423 (444)
-
T Consensus 285 L 285 (339)
T 3dad_A 285 L 285 (339)
T ss_dssp H
T ss_pred H
Confidence 4
No 148
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.59 E-value=0.0051 Score=60.72 Aligned_cols=248 Identities=12% Similarity=0.117 Sum_probs=153.1
Q ss_pred hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCCh---hhhhhccc-CCcHHHHHH-HHhcCCHHHHHHHHH
Q 038250 165 VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAG---EGLTYLGS-ASSMRCMVW-FLKSGDLSRRRNAVL 239 (444)
Q Consensus 165 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~---~~~~~i~~-~g~i~~Lv~-lL~~~~~~~~~~A~~ 239 (444)
....++..++++|... + +.++....+..+..++..++ ..-..+.+ ......+.. ++..++.-....|..
T Consensus 74 ~~~~~~~~~l~lL~~~--~----~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~ 147 (480)
T 1ho8_A 74 VNGKTLIPLIHLLSTS--D----NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFN 147 (480)
T ss_dssp CSSTTHHHHHHHHHSC--C----CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhhc--C----hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHH
Confidence 3446788899999532 2 57788888888887776655 22223232 222232333 223334444455665
Q ss_pred HHHHHHhcchhhHHHhhcccccHH--HHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC--cHHHHHHHh
Q 038250 240 VLREIVSSDHRKVNVLLDIEGAIE--PLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG--LVSLLLEML 315 (444)
Q Consensus 240 ~L~~L~s~~~~~~~~i~~~~g~i~--~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g--~v~~Lv~lL 315 (444)
++..++......-+.+ .+.+. -++..|.+..+....-.++.+|..|...++ .|..+.+++ .++++++++
T Consensus 148 l~~ll~~~~~~~~~~l---~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~----~R~~f~~~~~~~~~~l~~il 220 (480)
T 1ho8_A 148 VVSLLVQNGLHNVKLV---EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE----YRDVIWLHEKKFMPTLFKIL 220 (480)
T ss_dssp HHHHHTSTTTCCHHHH---HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH----HHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHhHH---HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh----HHHHHHHcccchhHHHHHHH
Confidence 5555532211111111 12222 344556553234456678999999998876 888887654 478887766
Q ss_pred hcc-----------------ccchHHHHHHHHHHhcCChhhHHHHhcCCCCh--HHHHHHHhhc-ChhHHHHHHHHHHHH
Q 038250 316 VDA-----------------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIF--PVIVKKILRV-SDLATEFAVSILWKL 375 (444)
Q Consensus 316 ~~~-----------------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i--~~Lv~ll~~~-~~~~~~~a~~~L~~L 375 (444)
... ...++-.++-+++.|+..++....+ .+.+.+ +.|+.+++.. .+.+...++.+|.|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l-~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nl 299 (480)
T 1ho8_A 221 QRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQC 299 (480)
T ss_dssp HHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHT
T ss_pred HHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHH-HhcchHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 521 2345788899999999988877777 555543 5677767654 678889999999999
Q ss_pred ccccccchHHHHHHHH-hhChHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhcc
Q 038250 376 CKNEEREEKTAFAEAL-QVGAFQKLLLLLQVG--CADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 376 ~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~--~~~~~k~~a~~ll~~l~~~~~ 427 (444)
....+.+......+++ ..++ .+++..|+.. .++.+.+--..+...|...-.
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 300 CSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp TSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9864322233444444 4455 6677777765 367888888888888776544
No 149
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.58 E-value=7e-05 Score=52.21 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=39.9
Q ss_pred ccccccccccCcCceecCCcc-----hhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 36 HFRCPISLDLMKDPVTLSTGI-----TYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~-----~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
.-.|.||++-..+|...+|.+ -|.+.|+.+|+..+++.+||.|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 458999998888888778653 699999999996667889999998775
No 150
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.55 E-value=5.3e-05 Score=57.36 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=38.5
Q ss_pred ccccccccCcCce-ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 38 RCPISLDLMKDPV-TLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 38 ~Cpic~~~~~~Pv-~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
.|++|.-.+..-. +++|+|.||..|+..|. .++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~-~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHE-KKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHH-HTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHH-hccCCCCcCcCCeeee
Confidence 6899988877654 45999999999999998 5778899999987753
No 151
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.51 E-value=0.011 Score=50.46 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
...+..++.+|..+-+.++.+|..+|..++..-++.-+.+ +..|+-+++.+..-......+.++..++.-.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl------~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM------LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH------HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH------HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence 3455666666666666666666666666643333322222 3344445444323344444445555554422
Q ss_pred CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 334 (444)
..+++ +.||.|..-.+-+++.++-+...+|..++
T Consensus 102 ----Pe~v~-~vVp~lfanyrigd~kikIn~~yaLeeIa 135 (253)
T 2db0_A 102 ----PELVK-SMIPVLFANYRIGDEKTKINVSYALEEIA 135 (253)
T ss_dssp ----HHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred ----HHHHH-hhHHHHHHHHhcCCccceecHHHHHHHHH
Confidence 12221 23444444444444444444444444443
No 152
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.47 E-value=0.016 Score=62.77 Aligned_cols=251 Identities=9% Similarity=0.050 Sum_probs=158.5
Q ss_pred HHHHHHHHHHhccCcccc-hhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHH
Q 038250 144 RDLVAKIKKWTKESDRNK-RCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCM 222 (444)
Q Consensus 144 ~~Al~~L~~l~~~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~L 222 (444)
+.|+..+..++....... ..-.-.+.+|.++..+ .+. +..|+..|-.++..++..-..+ .+ ...+|.|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~dk----~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~ 138 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNA---GNK----DKEIQSVASETLISIVNAVNPV--AI--KALLPHL 138 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHT---TCS----SHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHh---cCC----chHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHH
Confidence 888999999986543211 1111114455555555 222 4667776665555333222221 11 4568999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHhcchhhHHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhH
Q 038250 223 VWFLKSG-DLSRRRNAVLVLREIVSSDHRKVNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQ 300 (444)
Q Consensus 223 v~lL~~~-~~~~~~~A~~~L~~L~s~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 300 (444)
+..|.+. .+..+..|..+|..|+...+ +.++. -..+||.+-..+-+. .+++++.|..++..+|..-. |+.
T Consensus 139 ~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~----n~d 210 (986)
T 2iw3_A 139 TNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVD----NKD 210 (986)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCC----CTT
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCC----Ccc
Confidence 9999766 69999999999999964333 33321 246777777777766 68999999999999987654 332
Q ss_pred HHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCC----hHHHHHHHhhcChhHHHHHHHHHHHHc
Q 038250 301 KFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLI----FPVIVKKILRVSDLATEFAVSILWKLC 376 (444)
Q Consensus 301 ~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~----i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 376 (444)
. ...||.|++.+.+++. +..++..|+.-.-..+ +++-. +|.|..-|...+...+..++-+..|+|
T Consensus 211 ~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~------v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~ 279 (986)
T 2iw3_A 211 I---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE------VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMC 279 (986)
T ss_dssp T---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC------CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred h---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee------ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchh
Confidence 1 3479999999987643 5556666655443322 22223 444444444446677788999999999
Q ss_pred cccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250 377 KNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 377 ~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~ 427 (444)
+.-.+ +...... -...+|-|-.....-..|++|+.|...+..|.+...
T Consensus 280 ~lv~~--~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 280 KLVED--PQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp TTCCC--HHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCC--HHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 87432 3333221 244455555555566689999999999998877654
No 153
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.41 E-value=0.0045 Score=66.99 Aligned_cols=252 Identities=11% Similarity=0.057 Sum_probs=161.2
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChh--hhh-hccc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGE--GLT-YLGS 215 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~--~~~-~i~~ 215 (444)
+...+..|...|..+...+... ..+..+.+..|.+.+... ... +.|+.++..++..... ..+ .++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k--------~~~-~~a~~~~~~~~~~~~~~~~~e~~~~- 94 (986)
T 2iw3_A 27 TADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDK--------KTA-ANAMQAVAHIANQSNLSPSVEPYIV- 94 (986)
T ss_dssp CTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSH--------HHH-HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred chhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhcc--------CCH-HHHHHHHHHHHHhcCCCCCcccchH-
Confidence 4567788888888887643211 222246777777777421 112 7888888755533321 111 122
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASAT 295 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 295 (444)
+.++.++..+......++..|..++..|...-+.. .+ ..++|.|+..|++...-..+..|+.+|..|+....
T Consensus 95 -~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~-- 166 (986)
T 2iw3_A 95 -QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK-- 166 (986)
T ss_dssp -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH--
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH--
Confidence 45777777776667888888887877775433222 22 35689999999866457899999999999986532
Q ss_pred CchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHH
Q 038250 296 EKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKL 375 (444)
Q Consensus 296 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L 375 (444)
......=...||.+-+.+.+..++++..|..++..+|..-+++. + ...||.||+.|.+.+. ...++..|..-
T Consensus 167 --~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 167 --DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-I---ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-T---GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred --HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-h---hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 12111224688888888888899999999999999987433322 2 2578999998876533 34455555544
Q ss_pred ccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 376 CKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+.-.. -+.-.. +=.+|.|.+-|... +..+|++++.+..++++-
T Consensus 239 tfv~~-v~~~~l-----~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 239 TFVAE-VTPATL-----SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp CCCSC-CCHHHH-----HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTT
T ss_pred eeEee-ecchhH-----HHHHHHHHhhhccC-cchhheeeEEEEcchhhh
Confidence 33211 011111 22346666677666 888999999999888874
No 154
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.34 E-value=0.0066 Score=58.24 Aligned_cols=233 Identities=13% Similarity=0.046 Sum_probs=134.2
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
.|...++-.--.+..+++..++ .+ =++..|.+=+. ++ ++-++-.|+++|. .+...+ .- ..
T Consensus 80 ~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~---~~----N~~iR~lALRtL~-~I~~~~-m~-----~~ 139 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMT---GK----EDSYRGPAVRALC-QITDST-ML-----QA 139 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHH---SS----CHHHHHHHHHHHH-HHCCTT-TH-----HH
T ss_pred CCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcC---CC----cHhHHHHHHHHHh-cCCCHH-HH-----HH
Confidence 4776666666666677665221 11 12334444442 22 6889999999999 333222 11 13
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCc
Q 038250 218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEK 297 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 297 (444)
..+.+.+.|.+.++.++..|+.+..+|...+++ .+ .+++..+-+++.+. ++.++-+|+.+|..+..++.
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v---~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d~---- 208 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV---KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKNDR---- 208 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH---HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH---HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhch----
Confidence 456677777888999999999999999544444 44 37899999999887 89999999999999986542
Q ss_pred hhHHHHhcCcHHHHHHHhhcc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH
Q 038250 298 PIQKFVDMGLVSLLLEMLVDA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK 374 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~ 374 (444)
. ++..|+..+..+ ++-.+-..+.++..++..++.. .....++.+...|++.++.+.-.|++++..
T Consensus 209 --~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 209 --L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVN 276 (355)
T ss_dssp --H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC
T ss_pred --H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 1 345556555543 2333333334333443322111 112344555555666788888889999888
Q ss_pred HccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 038250 375 LCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLN 423 (444)
Q Consensus 375 L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~ 423 (444)
+...+ ... ...++..|..++.+. ++.+|-.|...|+.+.
T Consensus 277 l~~~~----~~~-----~~~a~~~L~~fLss~-d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 277 LPGCS----AKE-----LAPAVSVLQLFCSSP-KAALRYAAVRTLNKVA 315 (355)
T ss_dssp --------------------CCCTHHHHHHSS-SSSSHHHHHHCC----
T ss_pred ccCCC----HHH-----HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHH
Confidence 76521 111 134456677778777 7888988888555544
No 155
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.29 E-value=0.024 Score=60.85 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=73.5
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250 218 SMRCMVWFLKS-GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 218 ~i~~Lv~lL~~-~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
+|+.|+..+.+ .+..+|..|+.+|+.++..++ ..++.++.+|.+..++.++..|+.+|..++.++.
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~--- 644 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG--- 644 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC---
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC---
Confidence 36666666554 467888888888888843332 2356677766554489999999999999998764
Q ss_pred chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 297 KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 297 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+ . .+++.|..++.+.+..++..|+-+|+.+..
T Consensus 645 -~-~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 645 -L-Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp -C-H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred -c-H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 2 2 256678888888899999999999998875
No 156
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.29 E-value=0.067 Score=45.66 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcH
Q 038250 140 QAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSM 219 (444)
Q Consensus 140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i 219 (444)
..++.+|+..+..+++.-++-.+- .+..|+.+++. ++ ...+-....++++......++-. .+.+
T Consensus 46 wtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~k-sE-----aIpltqeIa~a~G~la~i~Pe~v-----~~vV 109 (253)
T 2db0_A 46 WTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKK-SE-----AIPLTQEIAKAFGQMAKEKPELV-----KSMI 109 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHH-CC-----SHHHHHHHHHHHHHHHHHCHHHH-----HHHH
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhh-cc-----cCchHHHHHHHHhHHHHhCHHHH-----HhhH
Confidence 458899999999998876653222 23344555542 11 24443344444442222222221 2446
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250 220 RCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPI 299 (444)
Q Consensus 220 ~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~ 299 (444)
|.+..-.+-+++.++.+..-+|..++..+++... +++.-+..++.++ +..-+-.|+..|..+ .+ |.
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~------~v~rdi~smltsk-d~~Dkl~aLnFi~al---Ge----n~ 175 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMA------SIVRDFMSMLSSK-NREDKLTALNFIEAM---GE----NS 175 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH------HHHHHHHHHTSCS-SHHHHHHHHHHHHTC---CT----TT
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhChHHHH------HHHHHHHHHhcCC-ChHHHHHHHHHHHHH---hc----cC
Confidence 6666666778999999999999999766665443 4566788899877 555555555544444 33 44
Q ss_pred HHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHcc
Q 038250 300 QKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCK 377 (444)
Q Consensus 300 ~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~ 377 (444)
..-+.. .+|.|..+|.+.++-++..|+.+|.+|+.....-..++ ..-++-+...|+.++......|..|..
T Consensus 176 ~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 FKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 444443 79999999999999999999999999998555444441 122333444577777777777777654
No 157
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.81 E-value=0.07 Score=51.07 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=110.6
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASS 218 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~ 218 (444)
|+..++.++..+-.+...+..- ..+--......+++++.+ . |..++.-.--.+. +++..++ ..+ =+
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f-~~~e~t~lf~~v~kl~~s---~----d~~lKrLvYLyl~-~~~~~~~--e~i---Lv 105 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHL-GTTEATEAFFAMTKLFQS---N----DPTLRRMCYLTIK-EMSCIAE--DVI---IV 105 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHGGGGC---C----CHHHHHHHHHHHH-HHTTTSS--CGG---GG
T ss_pred cHHHHHHHHHHHHHHHHCCCCC-chhHHHHHHHHHHHHhcC---C----CHHHHHHHHHHHH-HhCCCHH--HHH---HH
Confidence 4445555665555554443211 001111233344555532 1 4555554444444 3333211 111 24
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCch
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
+..|.+-+.++++-++-.|..+|+++. +++..+. +.+.+-+.|.+. ++.+++.|+-+...|.....
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~--~~~m~~~------l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~p----- 171 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQIT--DSTMLQA------IERYMKQAIVDK-VPSVSSSALVSSLHLLKCSF----- 171 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CTTTHHH------HHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCH-----
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCC--CHHHHHH------HHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCH-----
Confidence 788888899999999999999999993 4454433 457788888888 89999999999999986543
Q ss_pred hHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250 299 IQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 337 (444)
.+++ +.+..+-+++.+.++.++-+|+.+|..+..++
T Consensus 172 --e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 172 --DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp --HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred --HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 2343 68999999999999999999999999998743
No 158
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.80 E-value=0.0002 Score=66.95 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=38.2
Q ss_pred CccccccccccCcC----cee----cCCcchhcHHHHHHHHHhcC---------CCCCCCCCcccC
Q 038250 35 NHFRCPISLDLMKD----PVT----LSTGITYDRENIEKWIHEDG---------NITCPVTNRVLT 83 (444)
Q Consensus 35 ~~~~Cpic~~~~~~----Pv~----~~cg~~~c~~ci~~~~~~~~---------~~~CP~c~~~~~ 83 (444)
..-.|+||...+.+ |-. ..|||.|...|+.+|+.... .+.||.|+++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34589999999887 422 26999999999999995322 157999998875
No 159
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.059 Score=49.70 Aligned_cols=196 Identities=11% Similarity=0.071 Sum_probs=115.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh--HH-HhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250 218 SMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK--VN-VLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~--~~-~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 294 (444)
-+| |-.-|.+.++..|..|...|..+....+.. .. .+..-...++.+-..+.+. +..++..++.+|..++..-..
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhh
Confidence 345 557788999999999999998875433211 11 1101123455566677666 899999999999988754220
Q ss_pred CCchhH--HHHhcCcHHHHHHH-hhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250 295 TEKPIQ--KFVDMGLVSLLLEM-LVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSI 371 (444)
Q Consensus 295 ~~~~~~--~i~~~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~ 371 (444)
...... ...-...++.|++- |.+....++..+..+|..++........+ ++.++..+...++.++..++..
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhccCHHHHHHHHHH
Confidence 000111 12224567777764 66777888888888887775322111111 2334444455688888888888
Q ss_pred HHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 372 LWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 372 L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
|..+-...+. ...-....-..+++.+..++.+. ++.+|+.|..++--+-+
T Consensus 163 l~~~l~~fg~--~~~~~k~~l~~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 163 VYELMAAFGL--TNVNVQTFLPELLKHVPQLAGHG-DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHTT--TTCCHHHHHHHHGGGHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC--CcCCchhHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence 8776542110 00000000123445566677777 99999999997666544
No 160
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.17 E-value=0.054 Score=54.20 Aligned_cols=222 Identities=14% Similarity=0.093 Sum_probs=142.5
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCcc--cchhHhhcCchHHHHHHH--Hhhccccc-ccchHHHHHHHHHHHh
Q 038250 127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDR--NKRCIVDNGAVSVLAEAF--ETFSKTCL-DENVSVLEEILSTLTL 201 (444)
Q Consensus 127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL--~~~~~~~~-~~~~~~~~~a~~~L~~ 201 (444)
+.+.|...+.+...+.+.-|+.+|+++.+.... .|..-...+..-.|+.+| +.+.|=.. ..=..|+|.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 444444444444889999999999998876432 222111114444444444 33322100 1135689999999985
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHH
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKAS 281 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a 281 (444)
+...+++ ..++..|+..+.....+++..+...|.++ . +-.. .+ .++++.++..|++. +.+++..|
T Consensus 255 L~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~-~L---d~Vv~aVL~GL~D~-DDDVRAVA 319 (800)
T 3oc3_A 255 IYPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVE-DK---DGLCRKLVSLLSSP-DEDIKLLS 319 (800)
T ss_dssp HTTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCC-CH---HHHHHHHHHHTTCS-SHHHHHHH
T ss_pred HHhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHH-HH---HHHHHHHHhhcCCc-ccHHHHHH
Confidence 4222222 45566666666778899999999999999 1 1111 13 57899999999988 78999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc-c-cchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhh
Q 038250 282 LVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA-Q-RSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILR 359 (444)
Q Consensus 282 ~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~ 359 (444)
+.+|.-++ ..+ ... ..+..|.+.|.+- | .......+.+|+.|+..+. ....+...||.|...+..
T Consensus 320 AetLiPIA-~p~----~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~---~a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 320 AELLCHFP-ITD----SLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP---ELSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHTTSC-CSS----THH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT---TCCCCSGGGGGTGGGGTC
T ss_pred HHHhhhhc-chh----hHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc---ccccChHHHHHHHhhhcC
Confidence 99999988 222 222 2455666667643 2 2235667788888887663 122445778888888877
Q ss_pred cChhHHHHHHHHHHHHc
Q 038250 360 VSDLATEFAVSILWKLC 376 (444)
Q Consensus 360 ~~~~~~~~a~~~L~~L~ 376 (444)
.-..++..++.+|..+.
T Consensus 387 tITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS 403 (800)
T ss_dssp SSHHHHHHHHHHTTTCC
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 78889998888887766
No 161
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.00 E-value=0.0031 Score=48.85 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=28.5
Q ss_pred Cccccccccc-cCcCcee--cCCcchhcHHHHHHHH
Q 038250 35 NHFRCPISLD-LMKDPVT--LSTGITYDRENIEKWI 67 (444)
Q Consensus 35 ~~~~Cpic~~-~~~~Pv~--~~cg~~~c~~ci~~~~ 67 (444)
+++.|++|.+ ++.+|+. +.|+|+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4579999996 4789998 7999999999999854
No 162
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.072 Score=49.13 Aligned_cols=188 Identities=12% Similarity=0.141 Sum_probs=114.1
Q ss_pred HHHHHhhcccCChhHHHHHHHHHHHHhccCcccc--h-hHhhc-CchHHHHHHHHhhcccccccchHHHHHHHHHHHhhc
Q 038250 128 NCNITTACKSEDQAGCRDLVAKIKKWTKESDRNK--R-CIVDN-GAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLF 203 (444)
Q Consensus 128 l~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~--~-~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l 203 (444)
-..|.+. +...+.+|+..|..+....+... . .+..- ..++.+-..+ .|. +..++..++.+|..++
T Consensus 15 ~e~l~sk----~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l---~Ds----N~~v~~~al~~l~~~~ 83 (278)
T 4ffb_C 15 EERLTYK----LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI---TDS----NVVAQEQAIVALNSLI 83 (278)
T ss_dssp HHHTTCS----SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT---TCS----SHHHHHHHHHHHHHHH
T ss_pred HHhcccC----cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh---ccc----hHHHHHHHHHHHHHHH
Confidence 3455554 88999999999998876533211 1 11112 2334444555 333 7889999998887444
Q ss_pred CCChh---hhh--hcccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHH
Q 038250 204 PLAGE---GLT--YLGSASSMRCMVWF-LKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTA 277 (444)
Q Consensus 204 ~~~~~---~~~--~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 277 (444)
..... .+. ...-...++.|+.- |.+....++..|..+|..++..... . .-+++.++..+.+. +|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~------~~~~e~l~~~l~~K-npkv 155 (278)
T 4ffb_C 84 DAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-I------TQSVELVIPFFEKK-LPKL 155 (278)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-S------HHHHHHHGGGGGCS-CHHH
T ss_pred HHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-H------HHHHHHHHHHHhcc-CHHH
Confidence 32111 111 11113457777764 6677888999988888877432211 1 12345566667777 8999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+..++..|..+...-.....+....+. .+++.+..+|.+.++.+++.|..++..+-.
T Consensus 156 ~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 156 IAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 999999888876431100011222222 356678888999999999999999988765
No 163
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.96 E-value=0.41 Score=42.86 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=107.0
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccc-hhHhhcCchHHHHHHHHhhccccc----ccchHHHHHHHHHHHh
Q 038250 127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNK-RCIVDNGAVSVLAEAFETFSKTCL----DENVSVLEEILSTLTL 201 (444)
Q Consensus 127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~----~~~~~~~~~a~~~L~~ 201 (444)
.+++|.+.. +.+...+-+..|+...+.++..+ +.+ ..||+..|+++|........ ..+.+.+..++.+|..
T Consensus 5 yi~~L~~~~---~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLka 80 (233)
T 2f31_A 5 YIQELRSGL---RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 80 (233)
T ss_dssp HHHHHTTTC---CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---chHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 455555442 22223334555554444444333 234 57889999999965422110 1256778899999995
Q ss_pred hcCCChhh-hhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch--h-hHHHhh--------cccccHHHHHHHh
Q 038250 202 LFPLAGEG-LTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH--R-KVNVLL--------DIEGAIEPLFKLI 269 (444)
Q Consensus 202 ~l~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~--~-~~~~i~--------~~~g~i~~Lv~ll 269 (444)
++ .+... ...+...+++..|+..|.+.++.++..++.+|..++...+ . ....+. ....-..++|+.+
T Consensus 81 lm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l 159 (233)
T 2f31_A 81 FM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 159 (233)
T ss_dssp HT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred Hh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 54 44444 4455568899999999998999999999999988864332 1 111110 1223566788888
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHH
Q 038250 270 KEPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEM 314 (444)
Q Consensus 270 ~~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~l 314 (444)
++..+.+.+.+++..+-.+....++- -..|..+...|..+.+-++
T Consensus 160 ~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 207 (233)
T 2f31_A 160 KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 207 (233)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 76545666665555555555444310 1235555666655555444
No 164
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.88 E-value=0.2 Score=45.05 Aligned_cols=186 Identities=20% Similarity=0.196 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh-------cCC-CC---hHHHHHHHHHHHHHhcCCCCCCch
Q 038250 230 DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI-------KEP-IC---PTATKASLVVVYRTITSASATEKP 298 (444)
Q Consensus 230 ~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll-------~~~-~~---~~~~~~a~~aL~~L~~~~~~~~~~ 298 (444)
+++.|+.|..-|..=-...++..-.+=...|.+..|++=+ ..+ -+ ..-+.+|+..|-.++++.+ .
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpe----t 89 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPE----T 89 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTT----T
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcc----h
Confidence 5667887776666553333454444434556666665432 111 01 1235677778889999887 9
Q ss_pred hHHHHhcCcHHHHHHHhhcc-----ccchHHHHHHHHHHhcCCh--hhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHH
Q 038250 299 IQKFVDMGLVSLLLEMLVDA-----QRSLCEKALSVLDGLCSSD--YGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSI 371 (444)
Q Consensus 299 ~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~ 371 (444)
+..++++...-.|..+|... .+.++-.++++++.|++.+ +...- +.+.+.||..++.|..+++..+..|.-+
T Consensus 90 r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~f-LL~tEiiplCLrime~GselSKtvAtfI 168 (268)
T 2fv2_A 90 RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINF-LLTTEIIPLCLRIMESGSELSKTVATFI 168 (268)
T ss_dssp HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHH-HHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHH-HHhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999999988888888744 3568889999999999633 22333 4778999999999999999999999998
Q ss_pred HHHHccccccchHHHHHHHHh--------hChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 372 LWKLCKNEEREEKTAFAEALQ--------VGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 372 L~~L~~~~~~~~~~~~~~~~~--------~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+..+-.. +....-++. ..++..++.-+...+++++-+...+..--++.+
T Consensus 169 lqKIL~d-----d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 169 LQKILLD-----DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHS-----HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcc-----chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 8887652 333333321 345555555555555777777766654444433
No 165
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.0053 Score=58.34 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=54.9
Q ss_pred ccccccccccCcCceec-CCcch--hcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHHH
Q 038250 36 HFRCPISLDLMKDPVTL-STGIT--YDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQDW 100 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~-~cg~~--~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~~ 100 (444)
.+.||+....|..|+.- .|.|. |....+.......+.+.||+|++.+...++..+..+.++++..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 38999999999999986 79997 8877777766456779999999999888999998888887543
No 166
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.83 E-value=0.38 Score=43.28 Aligned_cols=198 Identities=11% Similarity=0.113 Sum_probs=126.5
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhh-cCchHHHHHHHHh-h---ccccc-ccchHHHHHHHHHHHhhcCCChhhhhh
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVD-NGAVSVLAEAFET-F---SKTCL-DENVSVLEEILSTLTLLFPLAGEGLTY 212 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~-~---~~~~~-~~~~~~~~~a~~~L~~~l~~~~~~~~~ 212 (444)
+++.+..|+..|.+--..-+.-...+=. -|.+..|++=+-+ + +.+.. .....=...|++.|. .++.+++.|..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ-cvAshpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ-CVASHPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH-HHHHCTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH-HHHcCcchhhH
Confidence 3456777776666533222222222222 4777777654422 1 11111 111223457777777 66779999999
Q ss_pred cccCCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHH
Q 038250 213 LGSASSMRCMVWFLKSGD-----LSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVY 286 (444)
Q Consensus 213 i~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 286 (444)
+.++...-.|-.+|+..+ ...|-.+..+++.|...+ .+.-..+ -..++||..++.++.+ +.-.+..|.-.+.
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fL-L~tEiiplCLrime~G-selSKtvAtfIlq 170 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFL-LTTEIIPLCLRIMESG-SELSKTVATFILQ 170 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHH-HHTTHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHH-HhhhHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 999998888888887653 567788999999996443 3444444 3568999999999999 6778888888887
Q ss_pred HHhcCCCCCCchhHHHHh-c-------CcHHHHHHHh-hccccchHHHHHHHHHHhcCChhhHHHH
Q 038250 287 RTITSASATEKPIQKFVD-M-------GLVSLLLEML-VDAQRSLCEKALSVLDGLCSSDYGRGDA 343 (444)
Q Consensus 287 ~L~~~~~~~~~~~~~i~~-~-------g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i 343 (444)
.+-.++. .-..+.. . .++..++.-+ .++++.+.++.+..-..|+.++..+..+
T Consensus 171 KIL~dd~----GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 171 KILLDDT----GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSHH----HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhccch----hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7766653 3333321 1 1333333333 3557788899999999999988888776
No 167
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.63 E-value=0.0084 Score=54.13 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=39.9
Q ss_pred ccccccccccCcCceec-CCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 36 HFRCPISLDLMKDPVTL-STGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
-..|.+|.++...-+.. .|++.|...|+.+|++..+...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 35799999999876655 49999999999999954556799999887543
No 168
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.35 E-value=0.012 Score=55.70 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=54.9
Q ss_pred ccccccccccCcCceec-CCcch--hcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHHHHHHHHH
Q 038250 36 HFRCPISLDLMKDPVTL-STGIT--YDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHTIRRMIQD 99 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~-~cg~~--~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~l~~~i~~ 99 (444)
.+.||+....|..|+.- .|.|. |....+.......+.+.||+|++.+...++..+..+.++++.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 48999999999999986 79998 888887777645677999999999988899999888888764
No 169
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.34 E-value=0.17 Score=46.22 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=111.5
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHH-hhcccccccchHHHHHHHHHHHhhcCCChhhhhhcc--
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFE-TFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLG-- 214 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~-- 214 (444)
.|...+.+|+..|......++ ...+...+. +...+. .+.++ +..+...++.+|..++..-.+.--.+.
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~--~~~~~~lDl---l~kw~~lr~~d~----N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSP--RSLLSNSDL---LLKWCTLRFFET----NPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCH--HHHHHTHHH---HHHHHHHHTTSC----CHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred CCHHHHHHHHHHHHHHhhhCh--HHHHHHHHH---HHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 477788889998888765433 222222222 223221 01122 677888888877743322111111222
Q ss_pred c-CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 215 S-ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 215 ~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
+ .-.+|.|+.-|......+|+.+-.+|..+... . ....+.+.++.-+++. +...+..++..|..+-....
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~-~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------V-GPLKMTPMLLDALKSK-NARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------H-CHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------C-CHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Confidence 1 34579999988777888999988888777421 1 2224567777888777 79999999999998865543
Q ss_pred CCCchhHHHHhcCcH---HHHHHHhhccccchHHHHHHHHHHhc
Q 038250 294 ATEKPIQKFVDMGLV---SLLLEMLVDAQRSLCEKALSVLDGLC 334 (444)
Q Consensus 294 ~~~~~~~~i~~~g~v---~~Lv~lL~~~~~~~~~~a~~~L~~L~ 334 (444)
.. ...++ +.+.+++.+.+..+++.|+.++..+-
T Consensus 200 ---~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 200 ---IS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp ---SG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred ---CC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12 24578 99999999999999999999988654
No 170
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.31 E-value=0.81 Score=49.92 Aligned_cols=225 Identities=8% Similarity=0.005 Sum_probs=124.5
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcc---c-CCcHH----HHHHHHhcC---CHHHHHHHHHHHHHHHhcchhhHHHhh
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLG---S-ASSMR----CMVWFLKSG---DLSRRRNAVLVLREIVSSDHRKVNVLL 256 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~---~-~g~i~----~Lv~lL~~~---~~~~~~~A~~~L~~L~s~~~~~~~~i~ 256 (444)
+-..++.|+.++..+..........+. . ....+ .++..|.+. ++-+|..|+++|+.++..- ..+.+
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l- 494 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQL- 494 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHH-
Confidence 345778888888744321110110010 0 02223 234445666 8899999999999995432 22333
Q ss_pred cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC----CCc-hhHHHHh--cCcHHHHHHHhhccc-----cchHH
Q 038250 257 DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA----TEK-PIQKFVD--MGLVSLLLEMLVDAQ-----RSLCE 324 (444)
Q Consensus 257 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~----~~~-~~~~i~~--~g~v~~Lv~lL~~~~-----~~~~~ 324 (444)
..+++.++..|.++ ++.++..|+.||.+++...+. ... .+..+.. ...++.|+.++.... ....+
T Consensus 495 --~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 495 --IELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp --HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred --HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 36788999999877 789999999999999874210 001 1222221 235666666766531 11335
Q ss_pred HHHHHHHHhcCChh-hHHHHhcCCCChHHHHHHHhhc-----ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH
Q 038250 325 KALSVLDGLCSSDY-GRGDAYNNSLIFPVIVKKILRV-----SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK 398 (444)
Q Consensus 325 ~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~ 398 (444)
.++.+|..++.... .-... . ...++.|+..+... +......+..+|..++.... ++ ........+++.
T Consensus 572 ~l~~al~~vv~~~~~~~~p~-~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~---~~-~~~~~~~~~~p~ 645 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPL-F-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ---RQ-NLPLLVDSMMPT 645 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGG-H-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC---GG-GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH-H-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC---cc-hHHHHHHHHHHH
Confidence 66677766653111 00000 0 12344555555431 33455567777777776421 11 223335677888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 399 LLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 399 Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
+..+|+.. .....+.+..++..+...
T Consensus 646 ~~~iL~~~-~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 646 FLTVFSED-IQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHTT-CTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-hHhhHHHHHHHHHHHHHh
Confidence 88888877 455566666665555444
No 171
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.90 E-value=1.1 Score=43.41 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=113.8
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccc-hhHhhcCchHHHHHHHHhhcccc----cccchHHHHHHHHHHH
Q 038250 126 EINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNK-RCIVDNGAVSVLAEAFETFSKTC----LDENVSVLEEILSTLT 200 (444)
Q Consensus 126 ~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~----~~~~~~~~~~a~~~L~ 200 (444)
.++..|.+.. ..+.....+..|+......+..+ +.++ .+|+..|+++|....... ...+...+..++.+|.
T Consensus 70 ~yi~~L~~~~---~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLk 145 (383)
T 3eg5_B 70 MYIQELRSGL---RDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK 145 (383)
T ss_dssp HHHHHHTTTC---CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---cchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 3566665542 22233445667776555555443 3455 788999999996542111 0224678889999999
Q ss_pred hhcCCChhh-hhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hh--HHHh--------hcccccHHHHHHH
Q 038250 201 LLFPLAGEG-LTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RK--VNVL--------LDIEGAIEPLFKL 268 (444)
Q Consensus 201 ~~l~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~--~~~i--------~~~~g~i~~Lv~l 268 (444)
.++ .+... ...+.....|..|+..|.+.++.++..|..+|..+|-... ++ ...+ .....-..++|..
T Consensus 146 alm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~ 224 (383)
T 3eg5_B 146 AFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 224 (383)
T ss_dssp HHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred HHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 544 44444 4455678899999999999999999999999988874432 21 1111 0123457788888
Q ss_pred hcCCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhcc
Q 038250 269 IKEPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVDA 318 (444)
Q Consensus 269 l~~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~~ 318 (444)
|+++.+.+.+.+++..+-.+....++- -..+..+...|..+.+-+ |+..
T Consensus 225 L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~ 276 (383)
T 3eg5_B 225 LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREI 276 (383)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTS
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcC
Confidence 887545666665555555555544310 123455566766665555 5543
No 172
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.62 E-value=0.45 Score=44.42 Aligned_cols=167 Identities=10% Similarity=0.011 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHhccCcccchhHhhcCchHHHH-HHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhccc--C
Q 038250 140 QAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLA-EAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGS--A 216 (444)
Q Consensus 140 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv-~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~--~ 216 (444)
.+.+.-++..+|-++.+ +.....+.+.+.-..++ .++....+. ..+..+--+++++. |+-.++..+..+.. .
T Consensus 116 ~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~---~~p~n~ml~lR~l~-NlF~~~~g~~~l~~~~~ 190 (304)
T 3ebb_A 116 EDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPK---GKPANQLLALRTFC-NCFVGQAGQKLMMSQRE 190 (304)
T ss_dssp TTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTT---SCHHHHHHHHHHHH-HGGGSHHHHHHHHHTHH
T ss_pred HHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCC---CChHHHHHHHHHHH-HccCCchhHHHHHHHHH
Confidence 34555566666665543 33333343332223444 333322111 13556788899999 88888887776653 2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATE 296 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 296 (444)
..++.+...+.+.+..++..++.++.|++...-..+. +-.....+..+..+++...+.++.-.++.||.+|...+.
T Consensus 191 ~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~--- 266 (304)
T 3ebb_A 191 SLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN-IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDS--- 266 (304)
T ss_dssp HHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCh---
Confidence 3445555555556889999999999999643211111 101112445555666655578999999999999997754
Q ss_pred chhHHHHh-cCcHHHHHHHhh
Q 038250 297 KPIQKFVD-MGLVSLLLEMLV 316 (444)
Q Consensus 297 ~~~~~i~~-~g~v~~Lv~lL~ 316 (444)
....+.+ -|+-..+-++..
T Consensus 267 -~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 267 -NAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp -HHHHHHHHTTHHHHGGGGGG
T ss_pred -hHHHHHHHcCHHHHHHHHHh
Confidence 4444444 344444434443
No 173
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.57 E-value=0.37 Score=45.03 Aligned_cols=161 Identities=12% Similarity=0.042 Sum_probs=92.3
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHH----HHHhc-CCHHHHHHHHHHHHH
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMV----WFLKS-GDLSRRRNAVLVLRE 243 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv----~lL~~-~~~~~~~~A~~~L~~ 243 (444)
.+..|.+++ +| ..+.+-.++.+++ ++..++..-..+.+.+.-..++ ..+.+ +.+..+..+++++.|
T Consensus 104 ~l~~l~kil-~W-------P~~~~fPvLDLlR-l~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~N 174 (304)
T 3ebb_A 104 QLQILWKAI-NC-------PEDIVFPALDILR-LSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCN 174 (304)
T ss_dssp HHHHHHHHH-TS-------CTTTCHHHHHHHH-HHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-------CHHhHHHHHHHHH-HHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 345566655 45 2334555666666 4445555444443322222333 32322 356678889999999
Q ss_pred HHhcchhhHHHhhcc-cccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh-ccccc
Q 038250 244 IVSSDHRKVNVLLDI-EGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV-DAQRS 321 (444)
Q Consensus 244 L~s~~~~~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~ 321 (444)
+ -.++..++.+... ..++..+...+.+. +..++..++.++.|++....++. .... ...++..+..++. ..+.+
T Consensus 175 l-F~~~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~-~~~~--~~~ll~~l~~il~~~~d~E 249 (304)
T 3ebb_A 175 C-FVGQAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDH-NIEG--KAQCLSLISTILEVVQDLE 249 (304)
T ss_dssp G-GGSHHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSC-CHHH--HHHHHHHHHHHHTTCCCHH
T ss_pred c-cCCchhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcC-CchH--HHHHHHHHHHHHhccCCHH
Confidence 9 5667677666322 23444555554444 67788888999999987632000 0011 1114445555554 34778
Q ss_pred hHHHHHHHHHHhcCChhhHHHH
Q 038250 322 LCEKALSVLDGLCSSDYGRGDA 343 (444)
Q Consensus 322 ~~~~a~~~L~~L~~~~~~~~~i 343 (444)
..-.++.+|++|...+....++
T Consensus 250 alyR~LvALGtL~~~~~~~~~l 271 (304)
T 3ebb_A 250 ATFRLLVALGTLISDDSNAVQL 271 (304)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhHHHH
Confidence 8899999999999765544444
No 174
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.40 E-value=1.9 Score=41.60 Aligned_cols=192 Identities=12% Similarity=0.082 Sum_probs=111.2
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCcccch-hHhhcCchHHHHHHHHhhccccc----ccchHHHHHHHHHHHh
Q 038250 127 INCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKR-CIVDNGAVSVLAEAFETFSKTCL----DENVSVLEEILSTLTL 201 (444)
Q Consensus 127 ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~----~~~~~~~~~a~~~L~~ 201 (444)
++..|.+.. ......+-+..|+...+.++..+. .+ ..||+..|+.+|........ ..+...+..++.+|..
T Consensus 9 yv~~L~~~~---~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLka 84 (386)
T 2bnx_A 9 YIQELRSGL---RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 84 (386)
T ss_dssp HHHHHTSCC---CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---chHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 455555542 222223345555554444443332 34 36889999999965422111 1256788899999995
Q ss_pred hcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-h--hHHHhh--------cccccHHHHHHHhc
Q 038250 202 LFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-R--KVNVLL--------DIEGAIEPLFKLIK 270 (444)
Q Consensus 202 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~--~~~~i~--------~~~g~i~~Lv~ll~ 270 (444)
++.....-...+...+++..|+..|.+.++.++..++.+|..+|.... + ....+. ....-..+||..+.
T Consensus 85 lmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~ 164 (386)
T 2bnx_A 85 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 164 (386)
T ss_dssp HTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred HhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 444333333455577889999999988899999999988888864432 1 111110 12235667888887
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCC---CchhHHHHhcCcHHHHHHHhhccccch
Q 038250 271 EPICPTATKASLVVVYRTITSASAT---EKPIQKFVDMGLVSLLLEMLVDAQRSL 322 (444)
Q Consensus 271 ~~~~~~~~~~a~~aL~~L~~~~~~~---~~~~~~i~~~g~v~~Lv~lL~~~~~~~ 322 (444)
.+.+.+.+.+++..+-.|....++- -..|..+...|..+.+-++=...++.+
T Consensus 165 ~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 165 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 6645666665555555555544310 123566667766666544433334433
No 175
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.94 E-value=1.3 Score=48.30 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=108.0
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHH-----HHHh----------------
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMV-----WFLK---------------- 227 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv-----~lL~---------------- 227 (444)
.++..++++....+. ..+..+...++..+.. +...+..+..+.....++.++ ..|.
T Consensus 288 ~~~~~~~~l~~~~~~--~~~~~~~~~al~fl~~-~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~ 364 (960)
T 1wa5_C 288 FIQITWNLLTSISNQ--PKYDILVSKSLSFLTA-VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY 364 (960)
T ss_dssp HHHHHHHHHHHCCSC--TTSHHHHHHHHHHHHH-HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred HHHHHHHHHHhcCCC--cCcHHHHHHHHHHHHH-HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence 344455555432111 1245677778888873 333444444443224444444 2221
Q ss_pred -------cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhc------CCCChHHHHHHHHHHHHHhcCCCC
Q 038250 228 -------SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIK------EPICPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 228 -------~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~------~~~~~~~~~~a~~aL~~L~~~~~~ 294 (444)
+.....+..|..+|..|+.... +.+ . .-+++.+-..+. +. +...++.|+.++..++.+..
T Consensus 365 i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v-~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~- 437 (960)
T 1wa5_C 365 IRRDLEGSDTDTRRRACTDFLKELKEKNE---VLV-T-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGN- 437 (960)
T ss_dssp HHHHHHC----CHHHHHHHHHHHHHHHCH---HHH-H-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSC-
T ss_pred HHhccCcccccCcHHHHHHHHHHHHHHcc---hhH-H-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhc-
Confidence 0112456677788888854332 222 1 234555555555 33 56789999999999986532
Q ss_pred CCchhHHHHhc-----CcHHH----HHHHhhcc---ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcCh
Q 038250 295 TEKPIQKFVDM-----GLVSL----LLEMLVDA---QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSD 362 (444)
Q Consensus 295 ~~~~~~~i~~~-----g~v~~----Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 362 (444)
.+..-... ...+. ++..|.+. ++.++..|+++|+.++..- ....+ ...++.+++.|.+.+.
T Consensus 438 ---~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~ 510 (960)
T 1wa5_C 438 ---ITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEY 510 (960)
T ss_dssp ---CBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCH
T ss_pred ---cccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCCh
Confidence 11100000 22222 33344555 7789999999999998742 11111 2456777777776678
Q ss_pred hHHHHHHHHHHHHccc
Q 038250 363 LATEFAVSILWKLCKN 378 (444)
Q Consensus 363 ~~~~~a~~~L~~L~~~ 378 (444)
.++..|+.+|.+++..
T Consensus 511 ~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 511 VVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8999999999999873
No 176
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.65 E-value=1.7 Score=40.75 Aligned_cols=187 Identities=10% Similarity=0.103 Sum_probs=130.2
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhh--cCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccC
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVD--NGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSA 216 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~ 216 (444)
+-+.+..+......+.+.....+...++ ..--..|..++.-+ +++++--.+-..|+ -|..++..-..+...
T Consensus 91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY------e~~diAl~~G~mLR-ecir~e~la~~iL~~ 163 (341)
T 1upk_A 91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY------ESPEIALNCGIMLR-ECIRHEPLAKIILWS 163 (341)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG------GSTTTHHHHHHHHH-HHHTSHHHHHHHHHS
T ss_pred CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh------ccchhHhHHHHHHH-HHHHhHHHHHHHhcc
Confidence 6777888888888877766554433222 01223344444322 13556666667777 556666666666677
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhh-HHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRK-VNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 294 (444)
+.+-.+......++=++...|..++..|...+... .+.+.. -.-++...-+||.++ +.-.++.++..|..|-.+..
T Consensus 164 ~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLgelLldr~- 241 (341)
T 1upk_A 164 EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGELLLDRH- 241 (341)
T ss_dssp GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHSGG-
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhCch-
Confidence 77888888888899999999999999987665532 233311 113566777888888 88899999999999998876
Q ss_pred CCchhHHH----HhcCcHHHHHHHhhccccchHHHHHHHHHHhcCCh
Q 038250 295 TEKPIQKF----VDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 295 ~~~~~~~i----~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 337 (444)
|...+ .+..-+..++.+|++.+..++-.|..+....+..+
T Consensus 242 ---N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 242 ---NFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp ---GHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred ---HHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 54443 34567899999999999999999999888765543
No 177
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.58 E-value=3 Score=45.39 Aligned_cols=217 Identities=8% Similarity=-0.030 Sum_probs=117.8
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHH---h--cCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFL---K--SGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI 262 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i 262 (444)
+-..++.|+.++..+...-.+.. ...++.++.++ . ..++.++..++++|+.++..-..+.+.+ ..++
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l---~~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI---PPAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH---HHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH---HHHH
Confidence 34577888888884332211111 23455555544 2 2378999999999999854322333334 3567
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh--cCcHHHHHHHhhcc--ccchHHHHHHHHHHhcCC--
Q 038250 263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD--MGLVSLLLEMLVDA--QRSLCEKALSVLDGLCSS-- 336 (444)
Q Consensus 263 ~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~--~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~-- 336 (444)
+.|+..|. +.++..|+.++.+++... +..+.. .+.+..|.+++..+ +...+..++.++..++..
T Consensus 549 ~~l~~~l~----~~v~~~A~~al~~l~~~~------~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 549 NLLVRGLN----SSMSAQATLGLKELCRDC------QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHH----SSCHHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhC----hHHHHHHHHHHHHHHHHH------HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 77887773 568999999999999643 333332 34566666777653 456778888888887642
Q ss_pred hhhHHHHhcCCCChHHHHHHHhh----c--ChhHHHHHHHHHHHHccc---cccch-H-------HHHHHHHhhChHHHH
Q 038250 337 DYGRGDAYNNSLIFPVIVKKILR----V--SDLATEFAVSILWKLCKN---EEREE-K-------TAFAEALQVGAFQKL 399 (444)
Q Consensus 337 ~~~~~~i~~~~g~i~~Lv~ll~~----~--~~~~~~~a~~~L~~L~~~---~~~~~-~-------~~~~~~~~~g~l~~L 399 (444)
.+.....+ ...+++++..+.. . ++.........|..|+.. -.+.. . .....-+...+++.+
T Consensus 619 ~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l 696 (971)
T 2x1g_F 619 PEEIPKYL--DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIF 696 (971)
T ss_dssp TTHHHHHH--HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHH
Confidence 23333331 1344555554442 1 222334444444444331 00000 0 000011234577777
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHHHh
Q 038250 400 LLLLQVG-CADKTKEHVSELLKLLNP 424 (444)
Q Consensus 400 l~ll~~~-~~~~~k~~a~~ll~~l~~ 424 (444)
..++... .++.+.+.+..++..+..
T Consensus 697 ~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 697 KRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHH
Confidence 7777653 256788887776666543
No 178
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.19 E-value=1.4 Score=39.37 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=91.7
Q ss_pred hhHHHHhcCcHHHHHHHhhcc-----------ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 298 PIQKFVDMGLVSLLLEMLVDA-----------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~~-----------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
....+ ..||+..|+++|..- +...+..++.+|..|.....|...++.+..++..++..|.+.+..++.
T Consensus 36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~ 114 (233)
T 2f31_A 36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 114 (233)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 56677 578999999998631 235678899999999999999999988888999988888777888889
Q ss_pred HHHHHHHHHccccc-cc-hHHHHHHH------HhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 367 FAVSILWKLCKNEE-RE-EKTAFAEA------LQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 367 ~a~~~L~~L~~~~~-~~-~~~~~~~~------~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
.++..|..+|..+. .| .......+ -+..-+..+++.+..+.+...+-.+..++|.+-..
T Consensus 115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~ 181 (233)
T 2f31_A 115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 181 (233)
T ss_dssp HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence 99999999998754 23 22222221 12335567888777554566777777777776544
No 179
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.18 E-value=1.4 Score=40.16 Aligned_cols=178 Identities=10% Similarity=0.066 Sum_probs=106.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHH
Q 038250 222 MVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQK 301 (444)
Q Consensus 222 Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 301 (444)
+...|-+.+..-+..|+..|....+.+++ ..+.....+++-+.--+.+. ++.+...++.+|..+...-.. ...+..
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~-~~y~~~ 126 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRD-TETPMS 126 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHh-ccccch
Confidence 34444455666666677777666443332 22311111233222223344 788888888888876421100 001111
Q ss_pred HHh-cCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc
Q 038250 302 FVD-MGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE 380 (444)
Q Consensus 302 i~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~ 380 (444)
-.+ .-.+|.|++-+.+..+.+++.+-.+|..|.. +.--....+.+++-+.+.+.+.++.++..+..+-...+
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 122 2378999999988888899998888887764 11111234566666666788899888888887755332
Q ss_pred cchHHHHHHHHhhChH---HHHHHHHhcCCChHHHHHHHHHHH
Q 038250 381 REEKTAFAEALQVGAF---QKLLLLLQVGCADKTKEHVSELLK 420 (444)
Q Consensus 381 ~~~~~~~~~~~~~g~l---~~Ll~ll~~~~~~~~k~~a~~ll~ 420 (444)
. . ...++ +.+..++.+. +..+|..|...+-
T Consensus 200 ~--~-------~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lv 232 (266)
T 2of3_A 200 I--S-------PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLV 232 (266)
T ss_dssp S--G-------GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHH
T ss_pred C--C-------ccccccchHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 1 1 24577 8888999877 8999999988443
No 180
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.03 E-value=1.3 Score=41.56 Aligned_cols=118 Identities=9% Similarity=0.082 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcC
Q 038250 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKE 271 (444)
Q Consensus 192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~ 271 (444)
...+...|. ++-.+.+...-+++.+++..+.....-.+.++....+..|... |+....+. + .-...+|.+++.+.-
T Consensus 260 vtR~FDLL~-LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQV-SDaksL~~-t-~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 260 IIRTFDLLG-LLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQV-SDAKALAK-T-PLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHH-HHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH-TTCGGGGT-S-CCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeee-cchHHHhh-c-cccccchHHHHHhcc
Confidence 344555665 4555555567788899999999999999999999999999999 55444332 2 335789999999885
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh
Q 038250 272 PICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV 316 (444)
Q Consensus 272 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~ 316 (444)
..+.++.-...+.|.|...+.. ..+...+..|+|+.|-..+.
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq---~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQ---HVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCH---HHHHHHHHTTHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhccc---chHHHHhccCcHHHHHHHHh
Confidence 5478899999999999999886 34555678999999999875
No 181
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.89 E-value=1.7 Score=42.01 Aligned_cols=126 Identities=19% Similarity=0.178 Sum_probs=94.0
Q ss_pred hhHHHHhcCcHHHHHHHhhc-----------cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 298 PIQKFVDMGLVSLLLEMLVD-----------AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
....++ .+|+..|+.+|.. .+...+..++.+|..|.....|...++.+..+|..|+..+.+.+..++.
T Consensus 102 WV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~ 180 (383)
T 3eg5_B 102 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 180 (383)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence 567776 7889999999862 1235678899999999999999999988899999999988777888999
Q ss_pred HHHHHHHHHccccc-cchHHHHHHHH-------hhChHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 038250 367 FAVSILWKLCKNEE-REEKTAFAEAL-------QVGAFQKLLLLLQVGCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 367 ~a~~~L~~L~~~~~-~~~~~~~~~~~-------~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~ 424 (444)
.++..|..+|..+. .+-.+.+.+++ +..-+..++..|..+.+...+-.+..+++.+-.
T Consensus 181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 246 (383)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence 99999999998753 21022222222 234577888888875466777777777777654
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.27 E-value=1.1 Score=44.13 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=86.9
Q ss_pred hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC
Q 038250 227 KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG 306 (444)
Q Consensus 227 ~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g 306 (444)
.+++...+..|+..|...-...++..+ -+|..++.|.++. +..++..|...|-.+|.+ + +...
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~----~i~k----- 100 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDE-DVSIRRQAIKELPQFATG-E----NLPR----- 100 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-T----CHHH-----
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-h----hhhh-----
Confidence 356899999999999999777776554 4578999999998 899999999999999988 5 6555
Q ss_pred cHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHH
Q 038250 307 LVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWK 374 (444)
Q Consensus 307 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~ 374 (444)
+++.|+++|...++.-....-.+|..|-. -+-+ |.+..|..-+.++++.+++.++..|..
T Consensus 101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk-~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 101 VADILTQLLQTDDSAEFNLVNNALLSIFK-MDAK-------GTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHh-cChH-------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 46689999987655444444444444432 1111 233344555555677888888877754
No 183
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.92 E-value=0.59 Score=51.31 Aligned_cols=143 Identities=9% Similarity=0.056 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHHHhcchh--hHHHhhcccccHHHHHHHhcCCC----ChHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 038250 229 GDLSRRRNAVLVLREIVSSDHR--KVNVLLDIEGAIEPLFKLIKEPI----CPTATKASLVVVYRTITSASATEKPIQKF 302 (444)
Q Consensus 229 ~~~~~~~~A~~~L~~L~s~~~~--~~~~i~~~~g~i~~Lv~ll~~~~----~~~~~~~a~~aL~~L~~~~~~~~~~~~~i 302 (444)
.+...++.++++++.++..-.+ ....+ ..+++.|+.++.+.. ...++..++++|...+..-. .....
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l---~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~----~~~~~ 537 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV---VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK----AHWNF 537 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH----HCHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH---HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 4789999999999999543322 33344 478999999987421 12334466677776654422 11122
Q ss_pred HhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHh-cCCC----ChHHHHHHHhh----cChhHHHHHHHHHH
Q 038250 303 VDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAY-NNSL----IFPVIVKKILR----VSDLATEFAVSILW 373 (444)
Q Consensus 303 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~~g----~i~~Lv~ll~~----~~~~~~~~a~~~L~ 373 (444)
.. .++..|++.|.+.++.+++.|+++|.+||. +.+..+. .+.| -++.++..+.. -+......+..++.
T Consensus 538 L~-~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 538 LR-TVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp HH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11 244445555555567899999999999996 3333441 1222 34444443332 35556677888888
Q ss_pred HHcccccc
Q 038250 374 KLCKNEER 381 (444)
Q Consensus 374 ~L~~~~~~ 381 (444)
.+....++
T Consensus 615 ~vi~~~~~ 622 (1023)
T 4hat_C 615 IIISEERS 622 (1023)
T ss_dssp HHHTTCCS
T ss_pred HHHHhCCC
Confidence 88776653
No 184
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.46 E-value=1.6 Score=47.60 Aligned_cols=138 Identities=9% Similarity=0.014 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHHHhcchhh-HHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCc
Q 038250 229 GDLSRRRNAVLVLREIVSSDHRK-VNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGL 307 (444)
Q Consensus 229 ~~~~~~~~A~~~L~~L~s~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~ 307 (444)
.+...++.|+.+|+.++....+. ...+ ..+++.+..+..++.++.++..++++|..++..-. .+...+- .+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l---~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~---~~~~~l~--~v 547 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQI---PRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLM---ENPAYIP--PA 547 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHH---HHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CHH--HH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHH---HHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHh---cCHHHHH--HH
Confidence 46778999999999995433321 1122 12333222222221268899999999999886532 1222111 35
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHh-cCCCChHHHHHHHhh--cChhHHHHHHHHHHHHcccc
Q 038250 308 VSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAY-NNSLIFPVIVKKILR--VSDLATEFAVSILWKLCKNE 379 (444)
Q Consensus 308 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~ 379 (444)
++.|+..| + +.++..|+.+|..|+. +.+..+. .-...+..+.+++.+ .+...+..+..++..++...
T Consensus 548 l~~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 548 INLLVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 66677777 3 7899999999999994 2333331 002334444555554 24677888888888887643
No 185
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.99 E-value=3.4 Score=44.80 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=101.9
Q ss_pred hcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh---cCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 038250 227 KSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI---KEPICPTATKASLVVVYRTITSASATEKPIQKFV 303 (444)
Q Consensus 227 ~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll---~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~ 303 (444)
.+.+...++.++.+|+.++....+. ....++.++..+ .++ ++.++..++++|...+..-. .+. ...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~------~~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~---~~~-~~l 527 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN------YSDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLA---DHP-VMI 527 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS------CCSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHH---HCH-HHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch------hhHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHH---hCH-HHH
Confidence 3457888999999999995433221 113344444443 223 67899999999998886532 022 233
Q ss_pred hcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHH----HHhhc--ChhHHHHHHHHHHHHcc
Q 038250 304 DMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVK----KILRV--SDLATEFAVSILWKLCK 377 (444)
Q Consensus 304 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~----ll~~~--~~~~~~~a~~~L~~L~~ 377 (444)
. .+++.|+..|.+ +.++..|+.+|..++. +.+..+ . ..++.++. ++.+. +...+..+..++..++.
T Consensus 528 ~-~vl~~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l-~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 528 N-SVLPLVLHALGN--PELSVSSVSTLKKICR--ECKYDL-P--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp T-TTHHHHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGC-T--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHhCC--chHHHHHHHHHHHHHH--HHHHHH-H--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 3 578888888854 7899999999999984 222222 1 33444444 34432 45677888888888876
Q ss_pred ccccchHHHHHHHHhhChHHHHHHHHh----cCCChHHHHHHHHHHHHH
Q 038250 378 NEEREEKTAFAEALQVGAFQKLLLLLQ----VGCADKTKEHVSELLKLL 422 (444)
Q Consensus 378 ~~~~~~~~~~~~~~~~g~l~~Ll~ll~----~~~~~~~k~~a~~ll~~l 422 (444)
..+ .+..... -...++++...+. ...++..+.....++..+
T Consensus 600 ~~~---~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 600 ALQ---VEEILKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp TSC---HHHHHHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred cCC---HHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 432 1222221 1344555555443 332555665554455444
No 186
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=90.82 E-value=2.6 Score=46.18 Aligned_cols=138 Identities=9% Similarity=0.033 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKS-----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAI 262 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i 262 (444)
+=..++.++.+++.+...-.+....-.-..+++.|+.++.. ....++..++++|+..+.--..+.+.+ ..++
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L---~~vl 542 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL---RTVI 542 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH---HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH---HHHH
Confidence 45678888999984443322221211114667888888764 223345567788876643222223333 2455
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHh------cCcHHHHHHHhh----ccccchHHHHHHHHHH
Q 038250 263 EPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVD------MGLVSLLLEMLV----DAQRSLCEKALSVLDG 332 (444)
Q Consensus 263 ~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~------~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~ 332 (444)
..|+..+.++ ++.+...|++++.+||.. .+..++. .-.++.++..+. .-+......+..+++.
T Consensus 543 ~~L~~~l~~~-~~~v~~~A~~al~~l~~~------c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 543 LKLFEFMHET-HEGVQDMACDTFIKIVQK------CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHHHH------HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC-CHHHHHHHHHHHHHHHHH------HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666555 688999999999999975 3444432 123454544433 2355556677777777
Q ss_pred hcC
Q 038250 333 LCS 335 (444)
Q Consensus 333 L~~ 335 (444)
+..
T Consensus 616 vi~ 618 (1023)
T 4hat_C 616 IIS 618 (1023)
T ss_dssp HHT
T ss_pred HHH
Confidence 765
No 187
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.63 E-value=4.6 Score=38.04 Aligned_cols=177 Identities=10% Similarity=0.108 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh
Q 038250 237 AVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV 316 (444)
Q Consensus 237 A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~ 316 (444)
+...|.-| -++.+...-+ +..+++..+..+++-+ +.++.++....|...+.... .+..=. ...+|-++..+.
T Consensus 263 ~FDLL~LL-mHdSnAIDGF-Vk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaks----L~~t~L-~e~LPFi~~~i~ 334 (619)
T 3c2g_A 263 TFDLLGLL-LHDSDAIDGF-VRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKA----LAKTPL-ENILPFLLRLIE 334 (619)
T ss_dssp HHHHHHHH-CCSHHHHHHH-HHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGG----GGTSCC-TTHHHHHHHHHH
T ss_pred HHHHHHHH-hcccccccce-eecccceeEEEEeecC-CcHHHHhhhheeeeecchHH----Hhhccc-cccchHHHHHhc
Confidence 34444444 4555666666 4568899999999988 78999999999998876543 222211 357888898886
Q ss_pred -ccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcC-------hhHHHHHHHHHHHHcc-----------
Q 038250 317 -DAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVS-------DLATEFAVSILWKLCK----------- 377 (444)
Q Consensus 317 -~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~-------~~~~~~a~~~L~~L~~----------- 377 (444)
+++.+++-...+.|+|...+..--+++....|+|+.|-+.+.+.. ..-+..|+++++|--+
T Consensus 335 ~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIP 414 (619)
T 3c2g_A 335 IHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIP 414 (619)
T ss_dssp HCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred cCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEe
Confidence 668889999999999999988887777777899999999887632 2234556655555321
Q ss_pred -----ccccchHHHHHH---HHhhChHHHHHHHHhcCC--ChHHHHHHHHHHHHH
Q 038250 378 -----NEEREEKTAFAE---ALQVGAFQKLLLLLQVGC--ADKTKEHVSELLKLL 422 (444)
Q Consensus 378 -----~~~~~~~~~~~~---~~~~g~l~~Ll~ll~~~~--~~~~k~~a~~ll~~l 422 (444)
.-+-| +-..++ .++..++..|+.-|.-+. .+.+-|--..+|+.+
T Consensus 415 m~NGqr~~~G-~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F 468 (619)
T 3c2g_A 415 TPNGETKTAG-PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSF 468 (619)
T ss_dssp CTTSCCCCCC-HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHH
T ss_pred cCCCccccCC-hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHH
Confidence 00001 222233 336688888888777652 233444444455544
No 188
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.48 E-value=4.1 Score=39.27 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=91.5
Q ss_pred hhHHHHhcCcHHHHHHHhhcc-----------ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHH
Q 038250 298 PIQKFVDMGLVSLLLEMLVDA-----------QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATE 366 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~~-----------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 366 (444)
....|. .||+..|+.+|..- +......++.+|..|.....|...++.+..++..++..|.+.+..++.
T Consensus 40 Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~ 118 (386)
T 2bnx_A 40 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 118 (386)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 566665 68899999998621 235678899999999999999999988889999998888767788888
Q ss_pred HHHHHHHHHccccc-cc-hHHHHHHH------HhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 038250 367 FAVSILWKLCKNEE-RE-EKTAFAEA------LQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 367 ~a~~~L~~L~~~~~-~~-~~~~~~~~------~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~ 425 (444)
.++..|..+|..+. .| .......+ .+..-+..|+..+..+.+...+-.+..++|.+-..
T Consensus 119 ~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~ 185 (386)
T 2bnx_A 119 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 185 (386)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCC
Confidence 89999999998654 22 22222111 12335567888887664667777777777776643
No 189
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.70 E-value=7.8 Score=41.90 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=95.4
Q ss_pred CChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC-hhhhhhcccC
Q 038250 138 EDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA-GEGLTYLGSA 216 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~-~~~~~~i~~~ 216 (444)
.+...+..++.++..++..-... +...++.++..+....++ ++.++..++.++.. .+.. .++...+ .
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~----~~~vr~~~~~~l~~-~~~~l~~~~~~l--~ 528 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISIS----NVQLADTVMFTIGA-LSEWLADHPVMI--N 528 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCC----SHHHHHHHHHHHHH-THHHHHHCHHHH--T
T ss_pred CchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCC----cHHHHHHHHHHHHH-HHHHHHhCHHHH--H
Confidence 45667788888888887653321 124556666666433222 57789999998883 3221 1112222 4
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhh-cccccHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCCCC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLL-DIEGAIEPLFKLIKEP-ICPTATKASLVVVYRTITSASA 294 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~-~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~ 294 (444)
..++.|+..|.. +.++..|+.+|.+++.. .+..+. -...++..|..++..+ .+...+..+..++..++..-.
T Consensus 529 ~vl~~l~~~l~~--~~V~~~A~~al~~l~~~---~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~- 602 (963)
T 2x19_B 529 SVLPLVLHALGN--PELSVSSVSTLKKICRE---CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ- 602 (963)
T ss_dssp TTHHHHHHHTTC--GGGHHHHHHHHHHHHHH---TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHhCC--chHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-
Confidence 678888888854 88999999999999643 233331 1134555566666653 246788888999998875431
Q ss_pred CCchhHHHHhcCcHHHHHHHhh
Q 038250 295 TEKPIQKFVDMGLVSLLLEMLV 316 (444)
Q Consensus 295 ~~~~~~~i~~~g~v~~Lv~lL~ 316 (444)
.+.....++ ..++++...+.
T Consensus 603 -~~~~~~~~~-~l~~~l~~~l~ 622 (963)
T 2x19_B 603 -VEEILKNLH-SLISPYIQQLE 622 (963)
T ss_dssp -HHHHHHHHH-HHHHHHHHHHH
T ss_pred -HHHHHHHHH-HHHHHHHHHHH
Confidence 013333332 35666665553
No 190
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.58 E-value=0.45 Score=34.87 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=35.9
Q ss_pred cccccccccCc-----Cceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMK-----DPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~-----~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.||.+-.- +|... .|+...|+.|.+-=. ..++..||.|+..+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-keG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-REGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-HTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH-hccCccccccCCccc
Confidence 58999998743 34443 699999999988545 588999999988775
No 191
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.13 E-value=7.2 Score=38.40 Aligned_cols=116 Identities=10% Similarity=0.126 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHH
Q 038250 274 CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVI 353 (444)
Q Consensus 274 ~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L 353 (444)
+...++-|+..|..-..+-. +. +.-++.++++|..+.+..++..|+..|-.+|.+ +...++ +..|
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP---~l-----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki------aDvL 105 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFP---EL-----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV------ADIL 105 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCG---GG-----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH------HHHH
T ss_pred CHHHHHHHHHHHHHHHhhCh---hh-----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH------HHHH
Confidence 57888888888877766543 12 233788899999988999999999999999987 555555 4588
Q ss_pred HHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHH
Q 038250 354 VKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSE 417 (444)
Q Consensus 354 v~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ 417 (444)
+++|++.+.......-.+|..|-+..+ .|.+..|..-+..+ .+.+|+++..
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dp------------k~tl~~lf~~i~~~-~e~~Rer~lk 156 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDA------------KGTLGGLFSQILQG-EDIVRERAIK 156 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcCh------------HHHHHHHHHHHccc-chHHHHHHHH
Confidence 888887776666666666666666322 24444455544445 6777777655
No 192
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.06 E-value=17 Score=33.96 Aligned_cols=247 Identities=10% Similarity=0.064 Sum_probs=156.0
Q ss_pred hHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhh----hcc-cCCcHHHHHHHHhcCCHHHHHHH
Q 038250 163 CIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLT----YLG-SASSMRCMVWFLKSGDLSRRRNA 237 (444)
Q Consensus 163 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~----~i~-~~g~i~~Lv~lL~~~~~~~~~~A 237 (444)
.+...|.+..|+..|... +-+.+..+..+...++.....++. .+. ....+..|+.-- +++++--.+
T Consensus 73 ei~~~dll~~Li~~l~~L-------~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~ 143 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLI-------DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNC 143 (341)
T ss_dssp HHHHHSHHHHHHHTGGGS-------CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHH
T ss_pred HHHHhCHHHHHHHhcccC-------CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHH
Confidence 345568888888888543 466777777776645554443332 222 222333333221 255666666
Q ss_pred HHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC---cHHHHHHH
Q 038250 238 VLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMG---LVSLLLEM 314 (444)
Q Consensus 238 ~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g---~v~~Lv~l 314 (444)
=.+|+.. ..++.....| -..+.+-.+.+.++.+ +-++...|..++..|-..+. .....+.+.. .+...-+|
T Consensus 144 G~mLRec-ir~e~la~~i-L~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk---~lvaefL~~nyd~Ff~~y~~L 217 (341)
T 1upk_A 144 GIMLREC-IRHEPLAKII-LWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHK---LLSAEFLEQHYDRFFSEYEKL 217 (341)
T ss_dssp HHHHHHH-HTSHHHHHHH-HHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHH-HHhHHHHHHH-hccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccH---HHHHHHHHHhHHHHHHHHHHH
Confidence 6677777 4566666666 3457788889999888 78999999999998866543 2444555433 56667788
Q ss_pred hhccccchHHHHHHHHHHhcCChhhHHHH---hcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH
Q 038250 315 LVDAQRSLCEKALSVLDGLCSSDYGRGDA---YNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL 391 (444)
Q Consensus 315 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 391 (444)
|.+++--++..++.+|+.|-.+..+..-+ +.+..-+..++.+|.+.+..++-.|..++--...+ |..++......+
T Consensus 218 l~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN-P~K~~~I~~IL~ 296 (341)
T 1upk_A 218 LHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN-PNKTQPILDILL 296 (341)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC-SSCCHHHHHHHH
T ss_pred hcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC-CCCChHHHHHHH
Confidence 88888888999999999998776665544 35556777888888888999999999888776654 333344444333
Q ss_pred --hhChHHHHHHHHhcC-CChHHHHHHHHHHHHHHhh
Q 038250 392 --QVGAFQKLLLLLQVG-CADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 392 --~~g~l~~Ll~ll~~~-~~~~~k~~a~~ll~~l~~~ 425 (444)
+...+.-|-.+.... .++.-.+.-+-+++.+..-
T Consensus 297 ~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 297 KNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp HTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 344444444444333 1333334334455555543
No 193
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=87.95 E-value=0.92 Score=33.66 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=39.3
Q ss_pred CCCCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 30 ELTTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 30 ~~~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
....-.-+.|-.|....+.=|. +..|-+|..|+...+ ...-.||.|+.++...
T Consensus 22 d~s~~G~~nCKsCWf~~k~LV~-C~dHYLCl~CLtlmL--~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKGLVE-CNNHYLCLNCLTLLL--SVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSSEEE-CSSCEEEHHHHHHTC--SSSSEETTTTEECCCC
T ss_pred CccccCcccChhhccccCCeee-ecchhhHHHHHHHHH--hhccCCcccCCcCCcc
Confidence 3444455899999887775322 456889999999877 5556799999988754
No 194
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.09 E-value=0.61 Score=33.36 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCccccccccccCcCceecC----CcchhcHHHHHHHHHhcC---CCCCCCC
Q 038250 34 PNHFRCPISLDLMKDPVTLS----TGITYDRENIEKWIHEDG---NITCPVT 78 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~----cg~~~c~~ci~~~~~~~~---~~~CP~c 78 (444)
...+.|.+|.+-++|-..+. -+|.||-.|-..+++.++ ...||.-
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 34589999999999875543 369999999999986543 3467653
No 195
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=84.87 E-value=25 Score=38.30 Aligned_cols=231 Identities=12% Similarity=0.013 Sum_probs=129.0
Q ss_pred CChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHH
Q 038250 119 VSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILST 198 (444)
Q Consensus 119 ~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~ 198 (444)
++-+++..++....++. .|.+.+.+|-.-|..+-+. ++ +......+|..... .+..++--|+.+
T Consensus 3 m~~~~v~~Al~~~~~p~--sd~~~r~~A~~~L~~~q~s-p~---------aw~~~~~iL~~~~~----~~~~vr~fa~~~ 66 (980)
T 3ibv_A 3 MSAQDVENAVEAALDPS--VGPIIKQQATDFIGSLRSS-ST---------GWKICHEIFSEKTK----YKPSTRLICLQT 66 (980)
T ss_dssp CHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHHS-TT---------HHHHHHHHTTCTTT----SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHcC-hh---------HHHHHHHHHhCCCC----CCHHHHHHHHHH
Confidence 34456666664333321 2677888888888877543 43 44556666632110 146778888887
Q ss_pred HHhhcC-CChh----hhhhcccCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHH
Q 038250 199 LTLLFP-LAGE----GLTYLGSASSMRCMVWFLKS-----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKL 268 (444)
Q Consensus 199 L~~~l~-~~~~----~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~l 268 (444)
|...+. .+++ .+..+ =..|+.++.+ +...++...+.+|..++... .-. .=.+.++-|+.+
T Consensus 67 L~~~I~~l~~e~~~~~~~~l-----r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~--~p~---~Wp~~i~~l~~~ 136 (980)
T 3ibv_A 67 LSEKVREWNNESNLLELQMI-----RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQL--YPS---NWNDFFASLQGV 136 (980)
T ss_dssp HHHHHHHCCTTTSHHHHHHH-----HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHH--TTT---TCTTHHHHHHHH
T ss_pred HHHHHHhCChhhhHHHHHHH-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh--Ccc---cCchHHHHHHHH
Confidence 774443 2223 23222 2334444432 34678888888888885332 111 114677888888
Q ss_pred hcCCCCh-HHHHHHHHHHHHHhcCCCC----CC-----ch---hHHHHhc---CcHHHHHHHhhc----cccchHHHHHH
Q 038250 269 IKEPICP-TATKASLVVVYRTITSASA----TE-----KP---IQKFVDM---GLVSLLLEMLVD----AQRSLCEKALS 328 (444)
Q Consensus 269 l~~~~~~-~~~~~a~~aL~~L~~~~~~----~~-----~~---~~~i~~~---g~v~~Lv~lL~~----~~~~~~~~a~~ 328 (444)
+..+ ++ ......+++|..|...-.+ .+ ++ +..+.+. -+++..+.+|.. .++.++..++.
T Consensus 137 ~~~~-~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~ 215 (980)
T 3ibv_A 137 IAAS-SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ 215 (980)
T ss_dssp HHHH-CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCC-ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 8765 33 3445555555533322000 00 00 2222221 124445555543 56778889999
Q ss_pred HHHHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccccc
Q 038250 329 VLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKNEE 380 (444)
Q Consensus 329 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~ 380 (444)
+|......-. -..+ .+...++.+.+.+. ++..++.|+.+|..+.....
T Consensus 216 ~l~s~i~wi~-~~~i-~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 216 VYAQWVSWIN-INLI-VNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKM 263 (980)
T ss_dssp HHHHHTTTSC-HHHH-HCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcC-HHhh-hcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCC
Confidence 9998887432 2333 45556666666553 47889999999999887654
No 196
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=83.61 E-value=51 Score=35.80 Aligned_cols=190 Identities=12% Similarity=0.038 Sum_probs=105.4
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhH-hhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCC
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCI-VDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSAS 217 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i-~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g 217 (444)
+...+.-|+..|.+..+.-+.. ..+ ...+.=..|+.++...++. ....-++.+...+|..+....-. . .=.+
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e-~~~~~~~~lr~~ll~~l~~~~~~--~~~~~IrnKL~~~la~l~~~~~p-~---~Wp~ 128 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNE-SNLLELQMIRDSVWSYIKELSFL--DEPAYISNAVQHLLTLLFLQLYP-S---NWND 128 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTT-TSHHHHHHHHHHHHHHHHHCCST--TSCTHHHHHHHHHHHHHHHHHTT-T---TCTT
T ss_pred CHHHHHHHHHHHHHHHHhCChh-hhHHHHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHhCc-c---cCch
Confidence 5678888888888777621111 000 0112223455555432210 11355777776666632221100 0 1156
Q ss_pred cHHHHHHHHhcCCH-HHHHHHHHHHHHHHhc--c----------h---hhHHHhhcc--cccHHHHHHHhc----CCCCh
Q 038250 218 SMRCMVWFLKSGDL-SRRRNAVLVLREIVSS--D----------H---RKVNVLLDI--EGAIEPLFKLIK----EPICP 275 (444)
Q Consensus 218 ~i~~Lv~lL~~~~~-~~~~~A~~~L~~L~s~--~----------~---~~~~~i~~~--~g~i~~Lv~ll~----~~~~~ 275 (444)
.++.|+.++.+++. ........+|..|... + . +.++.+... .-+++....+|. +. ++
T Consensus 129 ~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~-~~ 207 (980)
T 3ibv_A 129 FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK-NY 207 (980)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC-CH
Confidence 78888888876554 3344455555544211 0 0 113344110 011333334443 24 67
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC---ChhhHHHH
Q 038250 276 TATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS---SDYGRGDA 343 (444)
Q Consensus 276 ~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~---~~~~~~~i 343 (444)
.....++.+|..-...-+ ...+++.+.++.+.++|.+ +.+++.|+.+|..+.. .++.+..+
T Consensus 208 ~l~~~~L~~l~s~i~wi~-----~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~l 271 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWIN-----INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNL 271 (980)
T ss_dssp HHHHHHHHHHHHHTTTSC-----HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC-----HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 888889999988877653 6777888899999998874 6789999999988875 33444444
No 197
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=82.03 E-value=2.8 Score=42.20 Aligned_cols=195 Identities=10% Similarity=0.083 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHhhcCCChh--hhhhcccCCcHHHHHHHHh--------cC--CHHHHHHHHHHHHHHHhcchhhHHHhh
Q 038250 189 VSVLEEILSTLTLLFPLAGE--GLTYLGSASSMRCMVWFLK--------SG--DLSRRRNAVLVLREIVSSDHRKVNVLL 256 (444)
Q Consensus 189 ~~~~~~a~~~L~~~l~~~~~--~~~~i~~~g~i~~Lv~lL~--------~~--~~~~~~~A~~~L~~L~s~~~~~~~~i~ 256 (444)
=+++..|+..|+.++..+.. .|....+.+..-.|+.+|. ++ -..+||.|+.+|+.+ ..-++-
T Consensus 188 WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e----- 261 (800)
T 3oc3_A 188 WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP----- 261 (800)
T ss_dssp HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----
T ss_pred hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----
Confidence 46777777777766654432 1211112233444444442 11 267899999999998 443332
Q ss_pred cccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250 257 DIEGAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 257 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 336 (444)
..++..|+..+..+ .-+++..++-.|..+ .+ .... =.++++.++.-|.+.+.+++..|+.+|.-++ .
T Consensus 262 --~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~D----LL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~ 328 (800)
T 3oc3_A 262 --NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KE----FVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I 328 (800)
T ss_dssp --CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GG----GCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C
T ss_pred --HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HH----HHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c
Confidence 24455566555666 678999999999999 22 2222 2467888999999999999999999999888 2
Q ss_pred hhhHHHHhcCCCChHHHHHHH----hhcCh--hHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChH
Q 038250 337 DYGRGDAYNNSLIFPVIVKKI----LRVSD--LATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADK 410 (444)
Q Consensus 337 ~~~~~~i~~~~g~i~~Lv~ll----~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~ 410 (444)
+ ..++.++..+ .+-++ .........|..|+.+++. .......||.|..+++.. ...
T Consensus 329 p----------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-------a~~dp~LVPRL~PFLRHt-ITS 390 (800)
T 3oc3_A 329 T----------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-------LSIPPERLKDIFPCFTSP-VPE 390 (800)
T ss_dssp S----------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-------CCCCSGGGGGTGGGGTCS-SHH
T ss_pred h----------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-------cccChHHHHHHHhhhcCC-cHH
Confidence 2 3344444444 33222 2235566677777776431 111247788888888888 778
Q ss_pred HHHHHHHHHH
Q 038250 411 TKEHVSELLK 420 (444)
Q Consensus 411 ~k~~a~~ll~ 420 (444)
+|..+...|.
T Consensus 391 VR~AVL~TL~ 400 (800)
T 3oc3_A 391 VRTSILNMVK 400 (800)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 8887766443
No 198
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=81.86 E-value=0.28 Score=29.31 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=12.9
Q ss_pred CccccccccccCcCcee
Q 038250 35 NHFRCPISLDLMKDPVT 51 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~ 51 (444)
+.|+||+|+..+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 45889999888877643
No 199
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=81.77 E-value=28 Score=38.11 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=130.7
Q ss_pred CCChHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHH
Q 038250 118 PVSSVEVFEINCNITTACKSEDQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILS 197 (444)
Q Consensus 118 ~~~~~~i~~ll~~L~~~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~ 197 (444)
|.+-..+..++..+.++ +...+.+|-..|..+-+. + ++...+..+|.+. . +..++.-|+.
T Consensus 12 ~~~~~~l~~~l~~~~~p----~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s--~----~~~vr~~aa~ 71 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQG----SGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFS--T----NPQSKFIALS 71 (1049)
T ss_dssp CCCHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHC--S----CHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhC--C----CHHHHHHHHH
Confidence 44556777777776665 555677788888777433 3 3566677888531 1 5778888888
Q ss_pred HHHhhcC-----CChhhhhhcccCCcHHHHHHHHhcC---------CHHHHHHHHHHHHHHHhcchhhHHHhhcccccHH
Q 038250 198 TLTLLFP-----LAGEGLTYLGSASSMRCMVWFLKSG---------DLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIE 263 (444)
Q Consensus 198 ~L~~~l~-----~~~~~~~~i~~~g~i~~Lv~lL~~~---------~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~ 263 (444)
+|...+. .+++.|..|. ..|+.++.+. +..++...+.++..++..+-. . .=.+.++
T Consensus 72 ~Lk~~i~~~W~~l~~~~~~~ir-----~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p--~---~Wp~ll~ 141 (1049)
T 3m1i_C 72 ILDKLITRKWKLLPNDHRIGIR-----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP--Q---NWPEFIP 141 (1049)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHH-----HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT--T---TCTTHHH
T ss_pred HHHHHHHhhCccCCHHHHHHHH-----HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc--c---cchHHHH
Confidence 8875442 2334444332 2333433321 356778888888888543211 1 1246789
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhcCC----CC-CCchh-----HHHHhc--CcHHHHHHHhhcc-ccchHHHHHHHH
Q 038250 264 PLFKLIKEPICPTATKASLVVVYRTITSA----SA-TEKPI-----QKFVDM--GLVSLLLEMLVDA-QRSLCEKALSVL 330 (444)
Q Consensus 264 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~----~~-~~~~~-----~~i~~~--g~v~~Lv~lL~~~-~~~~~~~a~~~L 330 (444)
.|+.+++ . ++...+.++.+|..|+..- .+ ....+ ..+.+. .++..+..+|... +..++..++.++
T Consensus 142 ~L~~~~~-~-~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l 219 (1049)
T 3m1i_C 142 ELIGSSS-S-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESL 219 (1049)
T ss_dssp HHHHHHT-T-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHc-c-ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999996 3 4666778888888776321 00 00011 222221 1233344445433 456888899999
Q ss_pred HHhcCChhhHHHHhcCCCChHHHHHHHhhcChhHHHHHHHHHHHHccc
Q 038250 331 DGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFAVSILWKLCKN 378 (444)
Q Consensus 331 ~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~ 378 (444)
......-.. ..+ .+...++.+.+.+. .++..+..|+.+|..+...
T Consensus 220 ~~~l~wi~~-~~~-~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 220 LRYLHWIPY-RYI-YETNILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTTTSCT-HHH-HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhCCH-HHH-hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 876653332 223 34455555553232 3667778888888877754
No 200
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=81.69 E-value=23 Score=38.75 Aligned_cols=117 Identities=7% Similarity=0.024 Sum_probs=63.7
Q ss_pred chHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCC-hhhhhhcccCCcHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 038250 169 AVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLA-GEGLTYLGSASSMRCMVWFLKS-----GDLSRRRNAVLVLR 242 (444)
Q Consensus 169 ~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~-~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~ 242 (444)
+++.+...+...-.+. ..+-..++.|+.+++ .++.. .+....-.-...++.|+.+... .++-++..++++++
T Consensus 448 ~l~~v~~~l~~~l~~~-~~~W~~~eaal~alg-sia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg 525 (1049)
T 3m1i_C 448 TEEIMISKLARQIDGS-EWSWHNINTLSWAIG-SISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG 525 (1049)
T ss_dssp HHHHHHHHHHHHHTSS-SCCHHHHHHHHHHHH-HTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-HHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 4455555554321110 124566788888888 33321 1110000001233333333221 12334445778888
Q ss_pred HHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 243 EIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 243 ~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
..+.-.....+.+ ..+++.|+..+.++ ++.++..|+.++.+++..
T Consensus 526 ry~~~~~~~~~~l---~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 526 QYPRFLKAHWNFL---RTVILKLFEFMHET-HEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HCHHHHHHCHHHH---HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHH---HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 7643222333444 36788888888876 799999999999999975
No 201
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.44 E-value=55 Score=35.89 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=78.1
Q ss_pred CcHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHh----cCCCChHHHHHHHHHHHHH
Q 038250 217 SSMRCMVWFLKS----GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLI----KEPICPTATKASLVVVYRT 288 (444)
Q Consensus 217 g~i~~Lv~lL~~----~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll----~~~~~~~~~~~a~~aL~~L 288 (444)
..+..+..++.+ .++.+++.+..+++.|....-...... ....++.+...| ..+ +.+.+..++.+|.|+
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c--~~~~v~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC--PDELLQPLHDLLSQSSDRA-KEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC--CGGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhcc
Confidence 346666677754 467788888888888842211110111 123355555544 455 577788899999999
Q ss_pred hcCCCCCCchhHHHHhcCcHHHHHHHhhc-----c--ccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-
Q 038250 289 ITSASATEKPIQKFVDMGLVSLLLEMLVD-----A--QRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV- 360 (444)
Q Consensus 289 ~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~-----~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~- 360 (444)
.... .++.|..+|.. . ...++..|+++|..++.... ..+ -+.+..+..+.
T Consensus 468 g~p~--------------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--~~v------~~il~~i~~n~~ 525 (1056)
T 1lsh_A 468 GQPN--------------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--RKV------QEIVLPIFLNVA 525 (1056)
T ss_dssp TCGG--------------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--HHH------HHHHHHHHHCTT
T ss_pred CChh--------------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch--HHH------HHHHHHHhcCCC
Confidence 7532 47777777742 1 23577889999999875311 111 23455666543
Q ss_pred -ChhHHHHHHHHHHH
Q 038250 361 -SDLATEFAVSILWK 374 (444)
Q Consensus 361 -~~~~~~~a~~~L~~ 374 (444)
...++-.|+.+|..
T Consensus 526 e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 526 IKSELRIRSCIVFFE 540 (1056)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 55666666655543
No 202
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.05 E-value=22 Score=39.05 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=55.7
Q ss_pred cCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCC---CChHHHHHHHHHHHHHh--
Q 038250 215 SASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEP---ICPTATKASLVVVYRTI-- 289 (444)
Q Consensus 215 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~-- 289 (444)
...++..+.+++.++.....+ |+.+|..+........ ..+..+..+++++ .++.+.+.+.-++.+|.
T Consensus 354 T~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~-------e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k 425 (1056)
T 1lsh_A 354 TSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATR-------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFR 425 (1056)
T ss_dssp SHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCH-------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCH-------HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHH
Confidence 345677777778776544433 4444443311111112 2344455666543 24556666666666554
Q ss_pred --cCCCCCCchhHHHHhcCcHHHHHHHh----hccccchHHHHHHHHHHhcC
Q 038250 290 --TSASATEKPIQKFVDMGLVSLLLEML----VDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 290 --~~~~~~~~~~~~i~~~g~v~~Lv~lL----~~~~~~~~~~a~~~L~~L~~ 335 (444)
.++. .+. ...|+.+.+.| ..++..-+..++.+|+|+..
T Consensus 426 ~c~~~~----~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 426 YCANTV----SCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHTTCS----SCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HhccCC----CCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 3322 211 12345555444 45566667889999999865
No 203
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=79.32 E-value=0.73 Score=41.51 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=20.4
Q ss_pred hhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHH
Q 038250 208 EGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLV 240 (444)
Q Consensus 208 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~ 240 (444)
+.|...+..=....|..++.+.++.++..++..
T Consensus 65 ~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 65 ERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp HHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHH
Confidence 344444433234556667777788888887753
No 204
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=78.59 E-value=8.6 Score=32.02 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=57.3
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccC
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRAR 428 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~~ 428 (444)
+..|.+-|...++.++-.|+.+|-.+..+.+ .....++.....+..|+.++.....+.+|+++..++..-.....+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG---~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCG---KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC---HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh---HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3456666666788888999999988888642 445556667889999999888655789999999988777765443
No 205
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=75.45 E-value=38 Score=32.79 Aligned_cols=137 Identities=9% Similarity=0.080 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhcCCChhhhhhcccCCcHHHHH-HHHhcCCHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHh
Q 038250 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMV-WFLKSGDLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLI 269 (444)
Q Consensus 192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll 269 (444)
+-.++-+|+ ++..++..- +.+..++ ..+.+..+..+..++++|.|+ -.++. .+..+ ........+++.+
T Consensus 243 ~FPaLDLLR-l~v~~p~~~------~~l~~li~~~l~~~~~an~MltlR~laNl-F~~~~~g~~ll-~~~~~~~~i~~~i 313 (425)
T 3pst_A 243 KTPAYDIVR-LIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNC-FNNENWGVKLL-ESNQVYKSIFETI 313 (425)
T ss_dssp CHHHHHHHH-HHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH-TTCTTTHHHHH-TSHHHHHHHHHHS
T ss_pred ccHHHHHHH-HHHcCCchH------HHHHHHHHHhcCCCChhHHHHHHHHHHHh-cCCcchHHHHh-hCchhHHHHHHHH
Confidence 445777777 333333321 2233333 233345678888999999999 55666 35555 3333456677665
Q ss_pred cCC----C---ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------ccccchHHHHHHHHHHh
Q 038250 270 KEP----I---CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------DAQRSLCEKALSVLDGL 333 (444)
Q Consensus 270 ~~~----~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------~~~~~~~~~a~~~L~~L 333 (444)
... . +..++-+++..+.|++.... +.. .+...+..+++++. ..+.+..-.++.+|++|
T Consensus 314 ~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~-----~~~-~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtL 387 (425)
T 3pst_A 314 DTEFSQASAKQSQNLAIAVSTLIFNYSALVT-----KGN-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 387 (425)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHH-----HSC-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHHHHHHHHHHHHh-----ccc-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHH
Confidence 422 1 23466777778889987632 100 11234456666665 24778888999999999
Q ss_pred cCChhhHHHH
Q 038250 334 CSSDYGRGDA 343 (444)
Q Consensus 334 ~~~~~~~~~i 343 (444)
...+....++
T Consensus 388 v~~~~~~~~~ 397 (425)
T 3pst_A 388 ATVEPTLRQF 397 (425)
T ss_dssp HHHCHHHHHH
T ss_pred HhcCHHHHHH
Confidence 8633333333
No 206
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=75.27 E-value=14 Score=32.68 Aligned_cols=143 Identities=12% Similarity=-0.030 Sum_probs=88.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhc-CCCCCCc
Q 038250 219 MRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTIT-SASATEK 297 (444)
Q Consensus 219 i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~ 297 (444)
++..-.+..++..++|..|+.+|..+ .. . ...++.+-..+..+.+-.+++.++.++..++. .+.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~-------~---~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SK-------D---KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TT-------S---HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cC-------c---HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence 34444555666789999999988777 31 1 23456666644444478999999999999985 332
Q ss_pred hhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcCChhhHHHHhcCCC-ChHHHHHHHhhcChhHHHHHHHHHHHHc
Q 038250 298 PIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSL-IFPVIVKKILRVSDLATEFAVSILWKLC 376 (444)
Q Consensus 298 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-~i~~Lv~ll~~~~~~~~~~a~~~L~~L~ 376 (444)
.. .++.+...+.+++..++..|...+.--+..+. ...+.. +++.|-.+....+.-++....++|..++
T Consensus 138 e~-------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~----~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 138 KK-------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY----FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp TT-------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT----TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccch----hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 11 56778888888899998888766543221110 001111 1223322222346778999999999999
Q ss_pred cccccchHHHHHHHH
Q 038250 377 KNEEREEKTAFAEAL 391 (444)
Q Consensus 377 ~~~~~~~~~~~~~~~ 391 (444)
+.. ++.+...+
T Consensus 207 K~~----Pd~V~~~~ 217 (240)
T 3l9t_A 207 KKF----PDLVKIEL 217 (240)
T ss_dssp TTC----HHHHHHHH
T ss_pred hhC----HHHHHHHH
Confidence 954 44555544
No 207
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=74.53 E-value=0.61 Score=42.06 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVL 239 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~ 239 (444)
+..|+..++..|. .+.|..+++..+..++..++.
T Consensus 87 ~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 87 DEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp SHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHHHH
Confidence 6778877775321 124555566666777666655
No 208
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=74.42 E-value=39 Score=29.92 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHhhcC-CChhhhhhcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccc-cHHHH
Q 038250 188 NVSVLEEILSTLTLLFP-LAGEGLTYLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEG-AIEPL 265 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g-~i~~L 265 (444)
+=.|++-+..++...+. .+++ ..++.+...+.+++..+|..|...+.--+.. +..+ .... ++|.|
T Consensus 117 ~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k----~dp~~ll~iL 183 (240)
T 3l9t_A 117 NWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK----ENPNEAIRRI 183 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT----TCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh----cCHHHHHHHH
Confidence 46788887777774432 2222 2578888999999999999988887654322 2111 1122 34444
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCCC
Q 038250 266 FKLIKEPICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 266 v~ll~~~~~~~~~~~a~~aL~~L~~~~~ 293 (444)
-.+..++ +..++++.+++|..++..++
T Consensus 184 ~~L~~D~-s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 184 ADLKEDV-SEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred HHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence 4444444 78999999999999999875
No 209
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.49 E-value=8.3 Score=34.02 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=56.7
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
+..|.+-|.+.++.++-.|+.+|..+..+.+ .....++.....+..|..++.......+|+++..++..-+...
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG---~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCG---QTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC---HHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---hHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4456666777788999999999999888643 4455666677888888888877767899999999888777554
No 210
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=72.82 E-value=10 Score=34.12 Aligned_cols=100 Identities=11% Similarity=0.174 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHhcCC-------CChHHHHHHHHHHHHHhcCCCCCCchh
Q 038250 228 SGDLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLIKEP-------ICPTATKASLVVVYRTITSASATEKPI 299 (444)
Q Consensus 228 ~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll~~~-------~~~~~~~~a~~aL~~L~~~~~~~~~~~ 299 (444)
+.++..+..+++++.|+ -.++. .+..+ ........++..+.+. .+..++-+++..+.|++.... ..+
T Consensus 101 ~~~~~~~ml~lR~l~Nl-F~~~~~g~~l~-~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~---~~~ 175 (253)
T 3gae_A 101 NKNITLTMLTVRILVNC-FNNENWGVKLL-ESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT---KGN 175 (253)
T ss_dssp CSSHHHHHHHHHHHHHH-TTCTTTHHHHH-TSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH---TSC
T ss_pred CCchhHHHHHHHHHHHc-ccCCchHHHHH-hcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHh---hcc
Confidence 44677888999999999 55666 56666 3334455666554321 134466777888889987532 011
Q ss_pred HHHHhcCcHHHHHHHhhc---------cccchHHHHHHHHHHhcC
Q 038250 300 QKFVDMGLVSLLLEMLVD---------AQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 300 ~~i~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~L~~ 335 (444)
. +......+++++.. .+++..-.++-+|++|..
T Consensus 176 ~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 176 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp S---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred c---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1 12344556666652 366788888899998885
No 211
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=71.83 E-value=13 Score=30.10 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=54.5
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRA 427 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~~ 427 (444)
+..|.+-|...++.++-.|+.+|-.+..+.+ .....++.....+..|+.++... .+.++++...++..-+....
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG---~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCG---KIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC---HHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcC---HHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC
Confidence 4455566666788888889988888887643 34455555777888888888665 88999999998887765544
No 212
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=68.91 E-value=40 Score=31.91 Aligned_cols=129 Identities=10% Similarity=0.111 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhcCCChhhhhhcccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcchh-hHHHhhcccccHHHHHHHh
Q 038250 192 LEEILSTLTLLFPLAGEGLTYLGSASSMRCMVW-FLKSGDLSRRRNAVLVLREIVSSDHR-KVNVLLDIEGAIEPLFKLI 269 (444)
Q Consensus 192 ~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~L~s~~~~-~~~~i~~~~g~i~~Lv~ll 269 (444)
+-.++-+|+ ++..++.. ++.+..++. .+.+..+..+..+++++.|+ -.++. .+..+ ........+++.+
T Consensus 180 ~FP~LDLLR-l~v~~~~~------~~~l~~li~~~~~~~~~~n~MltlR~laNl-F~~~~~g~~ll-~~~~~~~~i~~~i 250 (362)
T 3l3f_X 180 KTPAYDIVR-LIVKKLPY------SSDIKDYIEEGLGNKNITLTMLTVRILVNC-FNNENWGVKLL-ESNQVYKSIFETI 250 (362)
T ss_dssp CHHHHHHHH-HHGGGCSC------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-TTCTTTHHHHH-TSHHHHTTHHHHS
T ss_pred cchHHHHHH-HHhcCCCh------HHHHHHHHHHhcCCCChhHHHHHHHHHHHh-ccCcchHHHHH-hcchhHHHHHHHH
Confidence 445777777 44333332 122333332 33345678888999999999 55666 45555 3222345555555
Q ss_pred cCC----C---ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhh---------ccccchHHHHHHHHHHh
Q 038250 270 KEP----I---CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLV---------DAQRSLCEKALSVLDGL 333 (444)
Q Consensus 270 ~~~----~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~---------~~~~~~~~~a~~~L~~L 333 (444)
... . +..++-+++..+.|++.... +.. .+...+..+++++. ..+.+..-.++.+|++|
T Consensus 251 ~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~-----~~~-~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL 324 (362)
T 3l3f_X 251 DTEFSQASAKQSQNLAIAVSTLIFNYSALVT-----KGN-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 324 (362)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHHHHHHHHHHH-----HTC-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHHHHHHHHHHHHh-----ccc-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHH
Confidence 321 1 23466777777889987632 100 11234456667666 24778888999999999
Q ss_pred cC
Q 038250 334 CS 335 (444)
Q Consensus 334 ~~ 335 (444)
..
T Consensus 325 ~~ 326 (362)
T 3l3f_X 325 AT 326 (362)
T ss_dssp HH
T ss_pred Hh
Confidence 85
No 213
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.13 E-value=15 Score=32.11 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=55.4
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHR 426 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~~~~~~k~~a~~ll~~l~~~~ 426 (444)
+..|.+-|...++.++..|+.+|-.+..+.+ .....++.....+..|+.++.......+|+++..+++.-...-
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG---~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCG---APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH---HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---HHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 3455566666788899999999999888632 3444566677788899998887657899999988887776554
No 214
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=67.76 E-value=76 Score=29.20 Aligned_cols=148 Identities=15% Similarity=0.133 Sum_probs=95.3
Q ss_pred cHHHHHHHHhcC------CHHHHHHHHHHHHHHHhcchhhHHHhhc-ccccHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 038250 218 SMRCMVWFLKSG------DLSRRRNAVLVLREIVSSDHRKVNVLLD-IEGAIEPLFKLIKEPICPTATKASLVVVYRTIT 290 (444)
Q Consensus 218 ~i~~Lv~lL~~~------~~~~~~~A~~~L~~L~s~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 290 (444)
....+..+|+++ +.+.-+.|...|..+ +++-++=..|.. .-..+..|+ +... ..+..++.|+++|..--+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~El-SHDi~~G~KI~~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEF-AHDYKHGYKIITHEFALLANLS-LNEN-LPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGG-TTSHHHHHHHHHHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHh-hhhHHhhhHHHhCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHHHc
Confidence 355566677776 344567788889999 666666666633 323444444 2222 256789999999998887
Q ss_pred CCCCCCchhHHHHh--cCcHHHHHHHhhc-------cccchHHHHHHHHHHhcCChhhHHHHhcCCCChHHHHHHHhhc-
Q 038250 291 SASATEKPIQKFVD--MGLVSLLLEMLVD-------AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRV- 360 (444)
Q Consensus 291 ~~~~~~~~~~~i~~--~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ll~~~- 360 (444)
+++ .....+.+ ...|..+..-|.. ....+++.-+.+|..|...+. .+ ...++..|.+++...
T Consensus 100 NNP---~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F--~~~~m~~L~~ly~~~~ 171 (315)
T 3qml_C 100 NNP---PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL--PIYSTVVLQNVYERNN 171 (315)
T ss_dssp TCH---HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC----CCHHHHHHHHHHTT
T ss_pred cCH---HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh--hhccHHHHHHHHccCC
Confidence 764 34444443 4566666665543 234678889999999998762 12 135678888877666
Q ss_pred -ChhHHHHHHHHHHHHc
Q 038250 361 -SDLATEFAVSILWKLC 376 (444)
Q Consensus 361 -~~~~~~~a~~~L~~L~ 376 (444)
++.++..++..+..+-
T Consensus 172 ~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 172 KDKQLQIKVLELISKIL 188 (315)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 7777877777766655
No 215
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=67.74 E-value=3.2 Score=32.69 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=37.6
Q ss_pred ccccccccccCcC---ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCC
Q 038250 36 HFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFE 86 (444)
Q Consensus 36 ~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~ 86 (444)
-|+|..|...+.+ .....-|..||..|..+.+ .....|-.|++++....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f--~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF--GNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHH--CCCCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHc--CCCCccccCCCCcCchh
Confidence 3899999999963 4555678899999998877 22337999998887543
No 216
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.96 E-value=0.12 Score=38.51 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=27.5
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
..||.|...|.. .-|+.+|..|-..+. ....||.|++++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~---~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIE---MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEE---EEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhh---ccccCcchhhHHH
Confidence 799999988763 234445877744322 2357999998875
No 217
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=65.22 E-value=7.4 Score=31.49 Aligned_cols=72 Identities=10% Similarity=0.199 Sum_probs=52.9
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 261 AIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
++..|.+-|.++ ++.++..|+..|-.+..+.. ......+.+...+..|++++...++.+++.++.++...+.
T Consensus 43 a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG--~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHK-DPHVAMQALTLLGACVSNCG--KIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSC--HHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcC--HHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 455566666666 78888888887777776654 2345566667788888898877788899999998887653
No 218
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=64.99 E-value=1.7e+02 Score=32.52 Aligned_cols=210 Identities=12% Similarity=0.069 Sum_probs=114.7
Q ss_pred ChhHHHHHHHHHHHHhccCcccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcC-----CChhhhhhc
Q 038250 139 DQAGCRDLVAKIKKWTKESDRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFP-----LAGEGLTYL 213 (444)
Q Consensus 139 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~-----~~~~~~~~i 213 (444)
+.+.+.+|-..|..+-+. +. +...+...|.+ .+ .+..++.-|+.+|...+. .+++.|..|
T Consensus 26 ~~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~--~s---~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I 90 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAE--KT---QVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL 90 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTS--TT---SCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHc--cC---CCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 555678888888777443 21 33444444421 11 156778778877774432 234444433
Q ss_pred ccCCcHHHHHHHHhc-------CCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHH
Q 038250 214 GSASSMRCMVWFLKS-------GDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVY 286 (444)
Q Consensus 214 ~~~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 286 (444)
. ..++.++.+ ....++...+.++..++..+ .-. .=.++++.|+.++.++ +...+.++.+|.
T Consensus 91 r-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d--~p~---~Wp~ll~~L~~~~~~~--~~~~e~~L~iL~ 158 (1204)
T 3a6p_A 91 K-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE--WPQ---HWPDMLIELDTLSKQG--ETQTELVMFILL 158 (1204)
T ss_dssp H-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH--STT---TCTTHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh--Ccc---cchHHHHHHHHHhcCC--HHHHHHHHHHHH
Confidence 3 234444432 35778888899999985432 111 1246788899988764 566888888888
Q ss_pred HHhcC---CCCCCchhH-----HHHhc--CcHHHHHHHhhc-------------------cccchHHHHHHHHHHhcCCh
Q 038250 287 RTITS---ASATEKPIQ-----KFVDM--GLVSLLLEMLVD-------------------AQRSLCEKALSVLDGLCSSD 337 (444)
Q Consensus 287 ~L~~~---~~~~~~~~~-----~i~~~--g~v~~Lv~lL~~-------------------~~~~~~~~a~~~L~~L~~~~ 337 (444)
.|+.. ...-...+. .+.+. .+++.+..+|.. .+..++..++.++.+....-
T Consensus 159 ~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi 238 (1204)
T 3a6p_A 159 RLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV 238 (1204)
T ss_dssp HHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc
Confidence 88643 110000111 12221 233334444432 12345566666666554422
Q ss_pred hhHHHHhcCCC--ChHHHHHHHhhcChhHHHHHHHHHHHHcccc
Q 038250 338 YGRGDAYNNSL--IFPVIVKKILRVSDLATEFAVSILWKLCKNE 379 (444)
Q Consensus 338 ~~~~~i~~~~g--~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~ 379 (444)
.. ..+ .+.. .++.+..++ .++..+..|+.+|..+....
T Consensus 239 ~~-~~i-~~~~~~ll~~l~~~l--~~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 239 SM-SHI-TAENCKLLEILCLLL--NEQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp CH-HHH-HTTTSHHHHHHHHGG--GCTTTHHHHHHHHHHHHTCC
T ss_pred CH-HHH-HhccchHHHHHHHHc--CCHHHHHHHHHHHHHHHhCC
Confidence 21 122 2222 444444332 36778899999999998754
No 219
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=64.58 E-value=22 Score=29.06 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=56.8
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc-----CCChHHHHHHHHHHHHHHh
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV-----GCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~-----~~~~~~k~~a~~ll~~l~~ 424 (444)
+..|.+-|.+.++.++-.|+.+|-.+..+.+ .....++....++..|+.++.. ...+.+|++...++..-+.
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG---~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCG---KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC---HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC---HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4566667777789999999999999988743 4555666688899999999864 2368899999888887765
Q ss_pred hc
Q 038250 425 HR 426 (444)
Q Consensus 425 ~~ 426 (444)
..
T Consensus 127 ~f 128 (149)
T 3g2s_A 127 GL 128 (149)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 220
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=62.16 E-value=1.5e+02 Score=32.41 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=105.4
Q ss_pred CChhHHHHHHHHHHHHhccCc----ccchhHhhcCchHHHHHHHHhhcccc--cccchHHHHHHHHHHHhhcCCChhhhh
Q 038250 138 EDQAGCRDLVAKIKKWTKESD----RNKRCIVDNGAVSVLAEAFETFSKTC--LDENVSVLEEILSTLTLLFPLAGEGLT 211 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~~----~~~~~i~~~G~i~~Lv~lL~~~~~~~--~~~~~~~~~~a~~~L~~~l~~~~~~~~ 211 (444)
.+...+.-|+..|.+..+..= ..... +.=..|++++.....+. ...++.++.+...++..+....-.. .
T Consensus 73 ~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~----~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~ 147 (1073)
T 3gjx_A 73 QNMNTKYYGLQILENVIKTRWKILPRNQCE----GIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-H 147 (1073)
T ss_dssp CSHHHHHHHHHHHHHHHHHTGGGSCHHHHH----HHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-T
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhCCHHHHH----HHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-h
Confidence 377888889999988776421 11111 22233444443321110 0113455555555555222111000 0
Q ss_pred hcccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-h------------hhHHHhhcc-cccHHHHHHHhcCCCChHH
Q 038250 212 YLGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-H------------RKVNVLLDI-EGAIEPLFKLIKEPICPTA 277 (444)
Q Consensus 212 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~------------~~~~~i~~~-~g~i~~Lv~ll~~~~~~~~ 277 (444)
=.+.++.++.++.+ ++...+....+|..|...- + ..++.+... ..++..+..+|....+++.
T Consensus 148 ---Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~l 223 (1073)
T 3gjx_A 148 ---WPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPL 223 (1073)
T ss_dssp ---CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHH
T ss_pred ---ccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 15678888888754 4556677888888884320 0 123334111 1233333344544447888
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHH-HHhhccccchHHHHHHHHHHhcC
Q 038250 278 TKASLVVVYRTITSASATEKPIQKFVDMGLVSLLL-EMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 278 ~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
...++.+|......-+ ...+++.+.++.|+ .+|. ++..+..|+.+|..+..
T Consensus 224 v~~~L~~L~~~~sWI~-----i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 224 VHATLETLLRFLNWIP-----LGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHHHHHTTTSC-----THHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----HHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHh
Confidence 8999999999988764 67788888888884 6663 56789999999999875
No 221
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.02 E-value=23 Score=29.68 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=56.1
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc-----CCChHHHHHHHHHHHHHHh
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV-----GCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~-----~~~~~~k~~a~~ll~~l~~ 424 (444)
+..|.+-|.+.++.++-.|+.+|-.+..+.+ .....++.....+..|+.++.. .....+|+++..++..-+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG---~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCG---RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH---HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4466677777888999999999999988632 4455566688999999999863 2357899999888877765
Q ss_pred hc
Q 038250 425 HR 426 (444)
Q Consensus 425 ~~ 426 (444)
..
T Consensus 129 ~f 130 (171)
T 1juq_A 129 AL 130 (171)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 222
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=61.97 E-value=11 Score=30.44 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=53.8
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHH-hhChHHHHHHHHhcC-----CC--hHHHHHHHHHHHH
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEAL-QVGAFQKLLLLLQVG-----CA--DKTKEHVSELLKL 421 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~g~l~~Ll~ll~~~-----~~--~~~k~~a~~ll~~ 421 (444)
.+.|.+-|...++.++-+|+.+|-.|+.+ |++..+..+. ....|..+..+--.. .+ ..+|+.|..++.+
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~---Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGK---SGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHh---CCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 45777777777888999999999999987 5688888877 454455444432221 11 5689999999999
Q ss_pred HHhhcc
Q 038250 422 LNPHRA 427 (444)
Q Consensus 422 l~~~~~ 427 (444)
+....+
T Consensus 128 l~d~~~ 133 (140)
T 1vdy_A 128 IFSEEN 133 (140)
T ss_dssp HTCCSS
T ss_pred HhCcCC
Confidence 975543
No 223
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.94 E-value=19 Score=29.30 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=56.9
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhc-----CCChHHHHHHHHHHHHHHh
Q 038250 350 FPVIVKKILRVSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQV-----GCADKTKEHVSELLKLLNP 424 (444)
Q Consensus 350 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~-----~~~~~~k~~a~~ll~~l~~ 424 (444)
+..|.+-|.+.++.++-.|+.+|-.+..+.+ .....++.....+..|+.++.. .....+|+++..++..-+.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG---~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCG---EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC---HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566667777889999999999999988643 4455666688999999998864 2367899998888877765
Q ss_pred hcc
Q 038250 425 HRA 427 (444)
Q Consensus 425 ~~~ 427 (444)
...
T Consensus 117 ~f~ 119 (148)
T 1mhq_A 117 WFP 119 (148)
T ss_dssp HCT
T ss_pred HcC
Confidence 543
No 224
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=59.60 E-value=4.4 Score=26.68 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=15.1
Q ss_pred CCcCCCCCCcccccccccc
Q 038250 27 GEMELTTPNHFRCPISLDL 45 (444)
Q Consensus 27 ~~~~~~~~~~~~Cpic~~~ 45 (444)
...+..+|+++.||+|..-
T Consensus 27 Gt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 27 GTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp SCCTTSSCTTCCCSSSCCC
T ss_pred CCchHHCCCCCcCCCCCCc
Confidence 3457788999999999864
No 225
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=59.16 E-value=2.2e+02 Score=31.60 Aligned_cols=182 Identities=12% Similarity=0.013 Sum_probs=98.2
Q ss_pred CChhHHHHHHHHHHHHhccC-----cccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhh
Q 038250 138 EDQAGCRDLVAKIKKWTKES-----DRNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTY 212 (444)
Q Consensus 138 ~~~~~~~~Al~~L~~l~~~~-----~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~ 212 (444)
.+...+.-|+..|++..+.. ++.|. ++=..|++++.+...+..+....++.+...++..+...+-. ..
T Consensus 59 ~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~-----~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~- 131 (1204)
T 3a6p_A 59 QVAIVRHFGLQILEHVVKFRWNGMSRLEKV-----YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QH- 131 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHSGGGSCHHHHH-----HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TT-
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCHHHHH-----HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-cc-
Confidence 36778888888888876441 11121 12234555554321110012466777776666633322111 11
Q ss_pred cccCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-----------hhHHHhhc-ccccHHHHHHHhcCC--------
Q 038250 213 LGSASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-----------RKVNVLLD-IEGAIEPLFKLIKEP-------- 272 (444)
Q Consensus 213 i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-----------~~~~~i~~-~~g~i~~Lv~ll~~~-------- 272 (444)
=.+.++.|+.++.+ +...++.+..+|..|+.... +.+..+.. ...+++.+..++++.
T Consensus 132 --Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~ 208 (1204)
T 3a6p_A 132 --WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVK 208 (1204)
T ss_dssp --CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 15778999998876 55668888999998843200 01112210 012344444455431
Q ss_pred ----------CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcC--cHHHHHHHhhccccchHHHHHHHHHHhcCC
Q 038250 273 ----------ICPTATKASLVVVYRTITSASATEKPIQKFVDMG--LVSLLLEMLVDAQRSLCEKALSVLDGLCSS 336 (444)
Q Consensus 273 ----------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g--~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 336 (444)
.+..+...++.++.+....-. ...+++.. .++.+..++. ++.++..|+.+|..+...
T Consensus 209 ~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-----~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 209 TDTSQESKAQANCRVGVAALNTLAGYIDWVS-----MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-----HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHhccC-----HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhC
Confidence 023355566666665444332 33444432 6666665554 578899999999999863
No 226
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=59.02 E-value=14 Score=26.82 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=28.0
Q ss_pred CcCCCCCCccccccccccCcCceec--CCcchhcHHHHHHH
Q 038250 28 EMELTTPNHFRCPISLDLMKDPVTL--STGITYDRENIEKW 66 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~~~~Pv~~--~cg~~~c~~ci~~~ 66 (444)
.+.+.++.+-.|+||...-.+-..- -|+.+|...|+++-
T Consensus 7 ~~~e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 7 GPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CcccCCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 3455677788999998655443222 38999999999984
No 227
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.06 E-value=42 Score=27.71 Aligned_cols=74 Identities=8% Similarity=-0.026 Sum_probs=55.0
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
.++..|..-|.++++.++..|..+|-.+.... ......|+ ...++..|+.++....++.+++.++..|..-+..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~eva-s~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVC-SRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHT-SHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh-hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 34667777788888989989999888886543 44555663 4688999999998645788988888887766543
No 228
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=56.42 E-value=4.1 Score=27.06 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.3
Q ss_pred CCcCCCCCCcccccccccc
Q 038250 27 GEMELTTPNHFRCPISLDL 45 (444)
Q Consensus 27 ~~~~~~~~~~~~Cpic~~~ 45 (444)
...+..+|+++.||+|..-
T Consensus 27 Gt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 27 GTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp TCCGGGSCTTCBCTTTCCB
T ss_pred CCChhHCCCCCcCcCCCCc
Confidence 3457789999999999864
No 229
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=56.27 E-value=55 Score=35.91 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHHHhcch--hhHHHhhcccccHHHHHHHhcCCCChH----HHHHHHHHHHHHhcCCCCCCchhHHHH
Q 038250 230 DLSRRRNAVLVLREIVSSDH--RKVNVLLDIEGAIEPLFKLIKEPICPT----ATKASLVVVYRTITSASATEKPIQKFV 303 (444)
Q Consensus 230 ~~~~~~~A~~~L~~L~s~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~----~~~~a~~aL~~L~~~~~~~~~~~~~i~ 303 (444)
+....+.++++++.++..-. .-+..+ ..+|+.|+.+.+.....+ +....+++++..+..-. ....+.
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~L---p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~----~h~~~L 564 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFL---VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR----AHWKFL 564 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHH---HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH----HCHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchH---HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH----hCHHHH
Confidence 58889999999999953222 233444 467888888886542212 22222344544433321 122233
Q ss_pred hcCcHHHHHHHhhccccchHHHHHHHHHHhcC
Q 038250 304 DMGLVSLLLEMLVDAQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 304 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 335 (444)
+. ++..|++.+.+.++.+++.|+.++..++.
T Consensus 565 ~~-vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 565 KT-VVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HH-HHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 22 56666666777789999999999999985
No 230
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.88 E-value=41 Score=27.57 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=53.7
Q ss_pred hHHHHHHHhh-cChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHH-HHHHHhcC--CChHHHHHHHHHHHHHHhh
Q 038250 350 FPVIVKKILR-VSDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQK-LLLLLQVG--CADKTKEHVSELLKLLNPH 425 (444)
Q Consensus 350 i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~-Ll~ll~~~--~~~~~k~~a~~ll~~l~~~ 425 (444)
+..|.+-|.+ .++.++-.|+.+|-.+..+.+ .....++.....+.. |+.++... +...+|+++..++..-+..
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG---~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCG---HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC---HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC---HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 3455666653 577888899999998888643 445556667888887 78888532 2458999998888777765
Q ss_pred ccC
Q 038250 426 RAR 428 (444)
Q Consensus 426 ~~~ 428 (444)
-.+
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 443
No 231
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=55.15 E-value=3.3 Score=23.39 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=11.7
Q ss_pred CccccccccccCcCcee
Q 038250 35 NHFRCPISLDLMKDPVT 51 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~ 51 (444)
..+.||+|...+-|+-+
T Consensus 2 ~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCEECTTSSCEESSHHH
T ss_pred CcccCccccccCcChHH
Confidence 34778888877777644
No 232
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=54.64 E-value=20 Score=26.14 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=19.8
Q ss_pred cccccccccCc--CceecCCcchhcH
Q 038250 37 FRCPISLDLMK--DPVTLSTGITYDR 60 (444)
Q Consensus 37 ~~Cpic~~~~~--~Pv~~~cg~~~c~ 60 (444)
-.|..|..-+. .|+.-.||.+||.
T Consensus 26 ~rC~~C~kkvgl~~~f~CrCg~~FC~ 51 (85)
T 1wff_A 26 KHCFLCGKKTGLATSFECRCGNNFCA 51 (85)
T ss_dssp CBCSSSCCBCSSSSCEECTTCCEECT
T ss_pred ccchhhCCeecccCCeEcCCCCEecc
Confidence 58999998554 4888899999996
No 233
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.53 E-value=5.6 Score=28.82 Aligned_cols=18 Identities=17% Similarity=0.232 Sum_probs=14.4
Q ss_pred CcCCCCCCcccccccccc
Q 038250 28 EMELTTPNHFRCPISLDL 45 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~ 45 (444)
..+..+|+++.||+|..-
T Consensus 52 T~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 52 TRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CCTTTSCTTCCCTTTCCC
T ss_pred CChhHCCCCCcCCCCCCC
Confidence 346678999999999864
No 234
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=53.76 E-value=2.9 Score=30.80 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=18.0
Q ss_pred ccccccccCcC-----ceecC-CcchhcHHHHHHH
Q 038250 38 RCPISLDLMKD-----PVTLS-TGITYDRENIEKW 66 (444)
Q Consensus 38 ~Cpic~~~~~~-----Pv~~~-cg~~~c~~ci~~~ 66 (444)
.||-|...+.. +|+-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 48888775532 24443 7777777665554
No 235
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=52.79 E-value=5.1 Score=26.38 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.5
Q ss_pred CcCCCCCCcccccccccc
Q 038250 28 EMELTTPNHFRCPISLDL 45 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~ 45 (444)
..+..+|+++.||+|..-
T Consensus 27 t~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 27 TKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp CCGGGSCTTCBCTTTCCB
T ss_pred CCHhHCCCCCcCCCCCCC
Confidence 446788999999999863
No 236
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=52.63 E-value=11 Score=29.78 Aligned_cols=49 Identities=8% Similarity=0.176 Sum_probs=37.4
Q ss_pred CCccccccccccCc---CceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 34 PNHFRCPISLDLMK---DPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 34 ~~~~~Cpic~~~~~---~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
++-|.|..|...+. .+....-|.-||..|..+.+ .....|..|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~--~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF--GQDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHH--CCCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhC--CCccChhhcCCccCc
Confidence 34599999999985 35666788999999988866 222379999988864
No 237
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=51.77 E-value=5.2 Score=26.65 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=14.5
Q ss_pred CcCCCCCCcccccccccc
Q 038250 28 EMELTTPNHFRCPISLDL 45 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~ 45 (444)
..+..+|+++.||+|..-
T Consensus 28 t~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 28 TRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp CCGGGSCTTCCCTTTCCC
T ss_pred CChhHCCCCCcCCCCCCC
Confidence 446778999999999864
No 238
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=51.44 E-value=1.4e+02 Score=27.36 Aligned_cols=137 Identities=9% Similarity=0.097 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHH--hcCCHHHHHHHHHHHHHHHhcchhhHHHhhc-ccccHHH
Q 038250 188 NVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFL--KSGDLSRRRNAVLVLREIVSSDHRKVNVLLD-IEGAIEP 264 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~-~~g~i~~ 264 (444)
+.+..+.|+..|. -++.+-+.-..|++.. ...|-.++ .+..+.+++.|+.+|..-...+|...+.|.. -...+..
T Consensus 41 D~~~le~aLD~L~-ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 41 DIARLEDSFDRIM-EFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHHHG-GGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred cHHHHHHHHHHHH-HhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence 3445677788887 6777666655555322 33333333 3346788999999999887888877665532 1234444
Q ss_pred HHHHhc----CC--CChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc--ccchHHHHHHHHHHhc
Q 038250 265 LFKLIK----EP--ICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA--QRSLCEKALSVLDGLC 334 (444)
Q Consensus 265 Lv~ll~----~~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~ 334 (444)
+..-|. .+ .....++.-+++|-.|..+.. .+ ...++..|++++... ++.++.+++.++..+-
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-------~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-------DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-------TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-------hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 433332 21 134677788888888887642 12 244678888888766 7888888888887664
No 239
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=51.35 E-value=28 Score=28.36 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=56.0
Q ss_pred ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc------cccchHHHHHHHHHHh
Q 038250 260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD------AQRSLCEKALSVLDGL 333 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L 333 (444)
.++..|.+-+.+. ++.++..|+..|-.+..+.. ......+.....+..|++++.. .+..+++..+.+|..-
T Consensus 48 ~a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG--~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 48 LATRLLAHKIQSP-QEWEAIQALTVLETCMKSCG--KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCC--HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcC--HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 3456677777777 88999999998888887765 3356777778899999999963 3677889998888876
Q ss_pred cC
Q 038250 334 CS 335 (444)
Q Consensus 334 ~~ 335 (444)
+.
T Consensus 125 ~~ 126 (149)
T 3g2s_A 125 TV 126 (149)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 240
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=51.28 E-value=4.8 Score=25.76 Aligned_cols=17 Identities=18% Similarity=0.254 Sum_probs=13.4
Q ss_pred cCCCCCCcccccccccc
Q 038250 29 MELTTPNHFRCPISLDL 45 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~ 45 (444)
.+..+|+++.||+|..-
T Consensus 23 ~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CGGGSCTTCBCTTTCCB
T ss_pred chhhCCCCCcCcCCCCc
Confidence 35578999999999853
No 241
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=50.83 E-value=8.8 Score=30.11 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=36.2
Q ss_pred CccccccccccCcC-ceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 35 NHFRCPISLDLMKD-PVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 35 ~~~~Cpic~~~~~~-Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
+-|.|..|...+.. +....-|..||..|..+.+ ...|+.|++++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc----CccCcccCCcCCc
Confidence 45999999998876 4555778999999977644 4579999998875
No 242
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.70 E-value=23 Score=28.89 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=56.0
Q ss_pred ccHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc------cccchHHHHHHHHHHh
Q 038250 260 GAIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD------AQRSLCEKALSVLDGL 333 (444)
Q Consensus 260 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L 333 (444)
.++..|.+-|+++ ++.++..|+.+|-.+..+.. ......+.+...+..|++++.. .+..+++.++.+|..-
T Consensus 38 ~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG--~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 38 HAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCG--EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSC--HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC--HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 3456677777777 89999999998888887754 3456777788899999999874 2668899998888876
Q ss_pred cC
Q 038250 334 CS 335 (444)
Q Consensus 334 ~~ 335 (444)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 243
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=50.38 E-value=5.7 Score=28.03 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=32.4
Q ss_pred CcCCCCCCccccccccccCcCceec--C--Cc-chhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 28 EMELTTPNHFRCPISLDLMKDPVTL--S--TG-ITYDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~~~~Pv~~--~--cg-~~~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
+.+....+...| +|.+.....++. . |. .-|...|+.---...+.+.||.|....
T Consensus 8 ~~~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 8 DMPVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred ccccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 344455666889 899976555443 3 43 356677765211013678999997543
No 244
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.57 E-value=3.2 Score=30.71 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=36.0
Q ss_pred CCCCccccccccccC---cCceec--CCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 038250 32 TTPNHFRCPISLDLM---KDPVTL--STGITYDRENIEKWIHEDGNITCPVTNRVLTSFEP 87 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~---~~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l 87 (444)
...++..|.+|...- .+.+++ .|...|...|+..-....+...||.|........+
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 345667999999764 223444 57778888998642223567889999765444433
No 245
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.86 E-value=43 Score=29.34 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=56.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcch-hhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDH-RKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTITS 291 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 291 (444)
.++..|..-|.+.++.++..|+.+|-.+..... .....|+ ...++..|+.+++...++.+++.++..|...+..
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eia-s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVA-NKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHS-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhc-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 457778888888899999999999988854322 3455663 4578888999987655688999999988877654
No 246
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=46.66 E-value=7 Score=27.49 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.0
Q ss_pred CcCCCCCCccccccccccC
Q 038250 28 EMELTTPNHFRCPISLDLM 46 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~~ 46 (444)
..+..+|+++.||+|..--
T Consensus 32 T~f~~lPddw~CP~Cga~K 50 (70)
T 1dx8_A 32 TPFVDLSDSFMCPACRSPK 50 (70)
T ss_dssp CCGGGSCTTCBCTTTCCBG
T ss_pred CchhhCCCCCcCCCCCCCH
Confidence 3466789999999998743
No 247
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.58 E-value=28 Score=29.14 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=55.1
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhc------cccchHHHHHHHHHHhc
Q 038250 261 AIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVD------AQRSLCEKALSVLDGLC 334 (444)
Q Consensus 261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~ 334 (444)
++..|.+-|.++ ++.++..|+.+|-.+..+.. ......+.+...+..|++++.. .+..+++.++.+|..-+
T Consensus 51 A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG--~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSP-QEWEALQALTVLEACMKNCG--RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSH--HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC--HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456677777777 78899999998888887743 2356677788899999999863 25688999998888765
Q ss_pred C
Q 038250 335 S 335 (444)
Q Consensus 335 ~ 335 (444)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 248
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.34 E-value=11 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=27.9
Q ss_pred ccccccccCcCceec---CCcchhcHHHHHHHHHhcCCCCCCCC
Q 038250 38 RCPISLDLMKDPVTL---STGITYDRENIEKWIHEDGNITCPVT 78 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~~~~~~~CP~c 78 (444)
.|--|+..+.+.-.. .|++.||..| ..++ .+.-..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fi-He~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFV-HDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHH-HHTT-TTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccch-hHHH-HhhccCCcCC
Confidence 488888888665422 6899999999 3344 3555789988
No 249
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.93 E-value=5.8 Score=29.54 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=31.6
Q ss_pred CcCCCCCCccccccccccCcCceec--C--Cc-chhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 28 EMELTTPNHFRCPISLDLMKDPVTL--S--TG-ITYDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 28 ~~~~~~~~~~~Cpic~~~~~~Pv~~--~--cg-~~~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
+.+.+..+...| +|.+.....++. . |. .-|...|+.---...+.+.||.|....
T Consensus 28 ~~~~d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 28 DMPVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCCSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred cCCcCCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 344455666889 999976654333 2 33 236666765111013568999997543
No 250
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.92 E-value=6.6 Score=33.47 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=36.9
Q ss_pred CccccccccccCcC---ceecCCcchhcHHHHHHHHHhcCCC-CCCCCCcccCC
Q 038250 35 NHFRCPISLDLMKD---PVTLSTGITYDRENIEKWIHEDGNI-TCPVTNRVLTS 84 (444)
Q Consensus 35 ~~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~~~~~~~-~CP~c~~~~~~ 84 (444)
+-|.|..|...+.+ +....-|.-||..|..+.+ +.. .|+.|++.+..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~---~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF---GNSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHH---SCCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccc---ccCCccccCCCcccc
Confidence 45999999999874 6666788999999988766 332 69999988764
No 251
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=44.99 E-value=0.74 Score=33.41 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=22.1
Q ss_pred cccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
..||.|...+.. .-++.+|..|-..+. ....||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~---~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFS---LQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEE---EEEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCC---CcccCcchhhHHH
Confidence 578888877653 122334555533222 1226888877764
No 252
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.21 E-value=48 Score=29.56 Aligned_cols=101 Identities=10% Similarity=-0.002 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHhhcCCChh-hhhhcccCCcHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhcchhhHHHhhcc
Q 038250 188 NVSVLEEILSTLTLLFPLAGE-GLTYLGSASSMRCMVWFLKS--------GDLSRRRNAVLVLREIVSSDHRKVNVLLDI 258 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~-~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~ 258 (444)
.+..+--+++++. |+-.++. .+..+........+++.+.+ .+..++..++.++.|++...-..+..
T Consensus 103 ~~~~~ml~lR~l~-NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~---- 177 (253)
T 3gae_A 103 NITLTMLTVRILV-NCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---- 177 (253)
T ss_dssp SHHHHHHHHHHHH-HHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC----
T ss_pred chhHHHHHHHHHH-HcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch----
Confidence 4667888999999 7777777 67766654344555554421 24567888999999996432211111
Q ss_pred cccHHHHHHHhcC----C----CChHHHHHHHHHHHHHhcCCC
Q 038250 259 EGAIEPLFKLIKE----P----ICPTATKASLVVVYRTITSAS 293 (444)
Q Consensus 259 ~g~i~~Lv~ll~~----~----~~~~~~~~a~~aL~~L~~~~~ 293 (444)
......++..+.. . .++++...++.||.+|...+.
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 1334455555542 1 267888889999999987653
No 253
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=42.65 E-value=19 Score=24.89 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=30.7
Q ss_pred ccccccccccCcCceec--CCcchhcHHHHHHHHHh--cCCCCCCCCCcc
Q 038250 36 HFRCPISLDLMKDPVTL--STGITYDRENIEKWIHE--DGNITCPVTNRV 81 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~--~cg~~~c~~ci~~~~~~--~~~~~CP~c~~~ 81 (444)
.-.|.+|.+- .-++. .|...|...|+...+.. .+...||.|...
T Consensus 12 ~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3579999864 33444 58889999998755522 356799999653
No 254
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=42.02 E-value=9.1 Score=28.12 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.4
Q ss_pred cCCCCCCcccccccccc
Q 038250 29 MELTTPNHFRCPISLDL 45 (444)
Q Consensus 29 ~~~~~~~~~~Cpic~~~ 45 (444)
.+..+|+++.||+|..-
T Consensus 61 ~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 61 RFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CGGGCCTTCCCSSSCCC
T ss_pred ChhHCCCCCCCCCCCCC
Confidence 45678899999999863
No 255
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.71 E-value=76 Score=27.48 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=55.1
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-hhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 038250 217 SSMRCMVWFLKSGDLSRRRNAVLVLREIVSSD-HRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRTIT 290 (444)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 290 (444)
.++..|..-|.+.++.++..|..+|-.+.... ......|+. ..++..|+.++.+..++.+++.++..+..-+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45677778888889999999999999986543 345566744 57899999998765567888888887776654
No 256
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=41.00 E-value=6.5 Score=21.31 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=9.8
Q ss_pred cccccccccCcCc
Q 038250 37 FRCPISLDLMKDP 49 (444)
Q Consensus 37 ~~Cpic~~~~~~P 49 (444)
..||+|++.|-..
T Consensus 7 vqcpvcqq~mpaa 19 (29)
T 3vhs_A 7 VQCPVCQQMMPAA 19 (29)
T ss_dssp EECTTTCCEEEGG
T ss_pred eeChHHHHhCcHH
Confidence 4799999887543
No 257
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=39.90 E-value=32 Score=28.47 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=35.4
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
++-|.|..|...+..-....-|.-||..|..+.+ ...|..|+..+...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH----SCBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc----cccccccccccCCC
Confidence 3459999999988765434678899999988766 23688888776543
No 258
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.23 E-value=6.4 Score=27.92 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=33.4
Q ss_pred CCCCccccccccccCcC-ceec--CCcchhcHHHHHHHHHh--cCCCCCCCCCcccC
Q 038250 32 TTPNHFRCPISLDLMKD-PVTL--STGITYDRENIEKWIHE--DGNITCPVTNRVLT 83 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~-Pv~~--~cg~~~c~~ci~~~~~~--~~~~~CP~c~~~~~ 83 (444)
.-.+...|++|...... .++. .|..-|...|+.--... .+.+.||.|...+.
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34556789999988654 3333 47777888887643211 25688999975543
No 259
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=38.86 E-value=23 Score=29.76 Aligned_cols=47 Identities=9% Similarity=0.150 Sum_probs=33.5
Q ss_pred CccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
+-|.|..|...+..-....-|.-||..|..+.+ ...|..|+..+...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT----SCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc----ccccccCCCccCCC
Confidence 348898998888754333567889999876533 35799998877654
No 260
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=38.72 E-value=12 Score=28.03 Aligned_cols=13 Identities=23% Similarity=0.670 Sum_probs=11.2
Q ss_pred hhcHHHHHHHHHh
Q 038250 57 TYDRENIEKWIHE 69 (444)
Q Consensus 57 ~~c~~ci~~~~~~ 69 (444)
.|||.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999953
No 261
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.70 E-value=5.5 Score=30.34 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=18.5
Q ss_pred CcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCccc
Q 038250 46 MKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVL 82 (444)
Q Consensus 46 ~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~ 82 (444)
+..|.-..||++|+. -+ .....||.|+..-
T Consensus 65 v~p~~C~~CG~~F~~-----~~--~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKA-----EI--NIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBCCC-----CS--SCCSSCSSSCCCC
T ss_pred EECcChhhCcCeecc-----cC--CCCCCCcCCCCCc
Confidence 445555589999821 11 2346899998643
No 262
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=38.56 E-value=12 Score=27.95 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=10.8
Q ss_pred hhcHHHHHHHHH
Q 038250 57 TYDRENIEKWIH 68 (444)
Q Consensus 57 ~~c~~ci~~~~~ 68 (444)
.|||.|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 263
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.96 E-value=65 Score=20.17 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=25.1
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHH----hcCCCCCCCCCcccCC
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIH----EDGNITCPVTNRVLTS 84 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~----~~~~~~CP~c~~~~~~ 84 (444)
...|.|++|...|... .-+.++.. ....+.|+.|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 3458999988877664 22333331 1234789999987753
No 264
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=37.63 E-value=14 Score=30.01 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=29.5
Q ss_pred ccccccccccCcCceec--CCcchhcHHHHHHHHH---------hcCCCCCCCCC
Q 038250 36 HFRCPISLDLMKDPVTL--STGITYDRENIEKWIH---------EDGNITCPVTN 79 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~--~cg~~~c~~ci~~~~~---------~~~~~~CP~c~ 79 (444)
+..|-+|.+--. ++. .|-.+||..|+..-+. ..+...||.|.
T Consensus 63 ~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 63 DEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp BCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 357888876442 222 6888999999996541 35678999995
No 265
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=33.98 E-value=81 Score=30.47 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHHhhcCCChh-hhhhcccCCcHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhcchhhHHHhhcc
Q 038250 188 NVSVLEEILSTLTLLFPLAGE-GLTYLGSASSMRCMVWFLKS--------GDLSRRRNAVLVLREIVSSDHRKVNVLLDI 258 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~-~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~ 258 (444)
.+..+--+++++. |+-.++. .+..+........+++.+.. .+..++..++.++.|++...-..+ . .
T Consensus 275 ~~an~MltlR~la-NlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--~-~- 349 (425)
T 3pst_A 275 NITLTMLTVRILV-NCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--S-D- 349 (425)
T ss_dssp SHHHHHHHHHHHH-HHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC--S-C-
T ss_pred ChhHHHHHHHHHH-HhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc--c-h-
Confidence 4667788899999 7776776 45455433334556665521 245678889999999964322111 1 1
Q ss_pred cccHHHHHHHhc-----C---CCChHHHHHHHHHHHHHhcCC
Q 038250 259 EGAIEPLFKLIK-----E---PICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 259 ~g~i~~Lv~ll~-----~---~~~~~~~~~a~~aL~~L~~~~ 292 (444)
...+..++.++. . ..++++.-.++.||.+|....
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 234455666665 1 126789999999999998654
No 266
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.81 E-value=38 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.9
Q ss_pred cccccccccCc-CceecCCcchhcH
Q 038250 37 FRCPISLDLMK-DPVTLSTGITYDR 60 (444)
Q Consensus 37 ~~Cpic~~~~~-~Pv~~~cg~~~c~ 60 (444)
..|..|..-+. .++.-.||.+||.
T Consensus 16 ~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMCRCGTTFCG 40 (64)
T ss_dssp CCCTTTCCCCCTTCEECSSSCEECT
T ss_pred CcChhhCCccCccCEEeecCCEecc
Confidence 58999998544 3677789999995
No 267
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=33.17 E-value=29 Score=25.73 Aligned_cols=46 Identities=11% Similarity=0.248 Sum_probs=34.4
Q ss_pred CccccccccccCcCc-eecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 35 NHFRCPISLDLMKDP-VTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 35 ~~~~Cpic~~~~~~P-v~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
+-|.|..|...+... ....-|..||..|..+ .....|..|++++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~----~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR----EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT----CCCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh----hcCCccccCCCcccc
Confidence 448999999998754 3446788999998654 334679999988864
No 268
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=32.32 E-value=5.2 Score=37.18 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=32.5
Q ss_pred CCccccccccccCcCceec----CCc--chhcHHHHHHHHHhcCCCCCCCCCcc
Q 038250 34 PNHFRCPISLDLMKDPVTL----STG--ITYDRENIEKWIHEDGNITCPVTNRV 81 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~----~cg--~~~c~~ci~~~~~~~~~~~CP~c~~~ 81 (444)
...-.||+|+..-.--++. .-| +-+|..|-.+|- -....||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~--~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH--YVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE--CCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe--ecCcCCcCCCCC
Confidence 3456999999876555543 245 457888888876 456789999875
No 269
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.77 E-value=31 Score=21.79 Aligned_cols=41 Identities=7% Similarity=0.133 Sum_probs=23.7
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
.|.|++|...|.....+. .| +.... ....+.|+.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~~l~-~H------~~~h~-~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-IH------LRTHT-GEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-HH------HHHHH-CCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHHH-HH------HHHcC-CCCCcCCCCCcchhCC
Confidence 478999988887753221 01 11111 2345789999887653
No 270
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=31.04 E-value=1.4e+02 Score=28.37 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH-------
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT------- 288 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L------- 288 (444)
...++.++.+-...+.++|...+..|...+..+.+. + .-+++.|..+|++. ++.+.+.+..+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el---~---~~~l~~L~~LL~d~-d~~V~K~~I~~~tslYpl~f~~ 134 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL---L---LKLIANLNMLLRDE-NVNVVKKAILTMTQLYKVALQW 134 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG---H---HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888877778999999999998886544333 2 24577888888876 788877777655544
Q ss_pred -hcCCCCCC----chhHHHHhcCcHHHHHHHhhccccchHHHHHHHHHHhc
Q 038250 289 -ITSASATE----KPIQKFVDMGLVSLLLEMLVDAQRSLCEKALSVLDGLC 334 (444)
Q Consensus 289 -~~~~~~~~----~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 334 (444)
+.+.. .+ ..-..+. ..-..++.++.+++..++-.|+..+..+.
T Consensus 135 i~~~~~-~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 135 MVKSRV-ISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHC-C-CCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCC-cchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 32221 00 0011111 13334555566677788888888777654
No 271
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.02 E-value=81 Score=25.75 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=52.0
Q ss_pred cHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHH-HHHHhhc---cccchHHHHHHHHHHhcC
Q 038250 261 AIEPLFKLIKEPICPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSL-LLEMLVD---AQRSLCEKALSVLDGLCS 335 (444)
Q Consensus 261 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~-Lv~lL~~---~~~~~~~~a~~~L~~L~~ 335 (444)
++..|.+-|++..++.++-.|+.+|-.+..+.. ......+.+...+.. |++++.. .+..+++.++.+|..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG--~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG--HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC--HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC--HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 455677777643378888889988888887754 345666777788888 8888853 234788888888877653
No 272
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.40 E-value=33 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=24.5
Q ss_pred CccccccccccCcCc-eecCCcchhcHHHHHHHH
Q 038250 35 NHFRCPISLDLMKDP-VTLSTGITYDRENIEKWI 67 (444)
Q Consensus 35 ~~~~Cpic~~~~~~P-v~~~cg~~~c~~ci~~~~ 67 (444)
+-|.|..|...+.+- ....-|..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 448899998887764 333567889999988766
No 273
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=30.37 E-value=4.1 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=22.2
Q ss_pred cccccc--ccccCc-----Cceec------CCcchhcHHHHHHHH
Q 038250 36 HFRCPI--SLDLMK-----DPVTL------STGITYDRENIEKWI 67 (444)
Q Consensus 36 ~~~Cpi--c~~~~~-----~Pv~~------~cg~~~c~~ci~~~~ 67 (444)
...||- |...+. .+|+- .||+.||..|.+.|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 456876 776654 23444 489999999987765
No 274
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=30.33 E-value=1.6e+02 Score=26.21 Aligned_cols=66 Identities=9% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhhHHHhhcccccHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 038250 216 ASSMRCMVWFLKSGDLSRRRNAVLVLREIVSSDHRKVNVLLDIEGAIEPLFKLIKEPICPTATKASLVVVYRT 288 (444)
Q Consensus 216 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 288 (444)
...++.++.+-...+.++|...+..|...+...++ + ....++.|..++++. ++.+.+.+..+..++
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~----l--~~~~l~~L~~Ll~d~-d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE----L--LPHVINVVSMLLRDN-SAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----G--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 34566666655556788999999999888644433 2 135678888889876 788888877765554
No 275
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.79 E-value=47 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=19.1
Q ss_pred ccccccccccCc-CceecCCcchhcH
Q 038250 36 HFRCPISLDLMK-DPVTLSTGITYDR 60 (444)
Q Consensus 36 ~~~Cpic~~~~~-~Pv~~~cg~~~c~ 60 (444)
...|..|..-+. .++.-.||.+||.
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCG 40 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECS
T ss_pred CCcChhhCCcccccCeEeecCCEecc
Confidence 358999998544 3677789999995
No 276
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=29.76 E-value=18 Score=24.42 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=31.3
Q ss_pred CCCccccccccccCcCceec--CCcchhcHHHHHHHHH--hcCCCCCCCCCc
Q 038250 33 TPNHFRCPISLDLMKDPVTL--STGITYDRENIEKWIH--EDGNITCPVTNR 80 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~Pv~~--~cg~~~c~~ci~~~~~--~~~~~~CP~c~~ 80 (444)
...+..|.+|.+- .-++. .|...|...|+..-+. ..+...||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3445689999873 34444 5778899999886331 246688999964
No 277
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=28.72 E-value=94 Score=29.35 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHhhcCCChh-hhhhcccCCcHHHHHHHHh--------cCCHHHHHHHHHHHHHHHhcchhhHHHhhcc
Q 038250 188 NVSVLEEILSTLTLLFPLAGE-GLTYLGSASSMRCMVWFLK--------SGDLSRRRNAVLVLREIVSSDHRKVNVLLDI 258 (444)
Q Consensus 188 ~~~~~~~a~~~L~~~l~~~~~-~~~~i~~~g~i~~Lv~lL~--------~~~~~~~~~A~~~L~~L~s~~~~~~~~i~~~ 258 (444)
.+..+--+++++. |+-.++. .+..+........+++.+. ..+..++..++.++.|++...-. ... .
T Consensus 212 ~~~n~MltlR~la-NlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~--~~~-~- 286 (362)
T 3l3f_X 212 NITLTMLTVRILV-NCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK--GNS-D- 286 (362)
T ss_dssp SHHHHHHHHHHHH-HHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH--TCS-C-
T ss_pred ChhHHHHHHHHHH-HhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc--ccc-h-
Confidence 4677888899999 7776776 4544443222344444441 12456788899999999643221 111 1
Q ss_pred cccHHHHHHHhc-----C---CCChHHHHHHHHHHHHHhcCC
Q 038250 259 EGAIEPLFKLIK-----E---PICPTATKASLVVVYRTITSA 292 (444)
Q Consensus 259 ~g~i~~Lv~ll~-----~---~~~~~~~~~a~~aL~~L~~~~ 292 (444)
...+..+++++. . ..++++.-.++.||.+|...+
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 234456666665 2 126889999999999998654
No 278
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.63 E-value=73 Score=22.45 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=18.4
Q ss_pred cccccccccCc-CceecCCcchhcH
Q 038250 37 FRCPISLDLMK-DPVTLSTGITYDR 60 (444)
Q Consensus 37 ~~Cpic~~~~~-~Pv~~~cg~~~c~ 60 (444)
..|..|..-+. .++.-.||.+||.
T Consensus 26 nRC~~CrKkvgL~gf~CrCg~~FCs 50 (74)
T 1wfl_A 26 NRCFMCRKKVGLTGFDCRCGNLFCG 50 (74)
T ss_dssp TBCSSSCCBCGGGCEECTTSCEECS
T ss_pred CcChhhCCcccccCeecCCCCEech
Confidence 58999987532 4677789999995
No 279
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.18 E-value=37 Score=23.03 Aligned_cols=40 Identities=5% Similarity=0.184 Sum_probs=25.3
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHH---hcCCCCCCCCCcccCC
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIH---EDGNITCPVTNRVLTS 84 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~---~~~~~~CP~c~~~~~~ 84 (444)
...|.|++|...|...-. +.+... ....+.|+.|++.+..
T Consensus 15 ~~~~~C~~C~k~f~~~~~-----------l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGN-----------LASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHHH-----------HHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHHH-----------HHHHHHHcCCCCCEECCCCCchhCC
Confidence 445899999988876532 222221 1234689999887753
No 280
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.07 E-value=21 Score=29.83 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=7.4
Q ss_pred CCCCCCCccc
Q 038250 73 ITCPVTNRVL 82 (444)
Q Consensus 73 ~~CP~c~~~~ 82 (444)
..||+|+.+-
T Consensus 154 ~~CP~Cg~~~ 163 (170)
T 3pwf_A 154 EYCPVCGAPK 163 (170)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCH
Confidence 3799998654
No 281
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=27.14 E-value=32 Score=26.85 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=26.0
Q ss_pred cccccccccCcCce-ecCCcchhcHHHHHHHHHhcCCCCCCCCCcccC
Q 038250 37 FRCPISLDLMKDPV-TLSTGITYDRENIEKWIHEDGNITCPVTNRVLT 83 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv-~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~ 83 (444)
-.|.-|.+...+.. +..-|..|...| +.|-.|+.++.
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~C----------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRC----------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTT----------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccc----------cCcCcCCCccc
Confidence 58888888877764 445677776655 35888877774
No 282
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=26.25 E-value=2.8e+02 Score=23.56 Aligned_cols=112 Identities=8% Similarity=0.004 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCchhHHHHhcCcHHHHHHHhhcc---ccchHHHHHHHHHHhcCC-----hhhHHHHhc
Q 038250 274 CPTATKASLVVVYRTITSASATEKPIQKFVDMGLVSLLLEMLVDA---QRSLCEKALSVLDGLCSS-----DYGRGDAYN 345 (444)
Q Consensus 274 ~~~~~~~a~~aL~~L~~~~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~-----~~~~~~i~~ 345 (444)
+.......+.....|..+.. ..-.--=.-.+|+++.++-.. ...+++.|+.+|..++.. +.-+..
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~----l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~R--- 131 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKH----VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPR--- 131 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTT----CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHH---
T ss_pred CHHHHHHHHHHHHHHHcCCC----CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHH---
Confidence 56677777777778877653 211111234788888887532 227999999999999852 112222
Q ss_pred CCCChHHHHHHHhhc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhChHHHHHHHHhcC
Q 038250 346 NSLIFPVIVKKILRV--SDLATEFAVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVG 406 (444)
Q Consensus 346 ~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~g~l~~Ll~ll~~~ 406 (444)
++..+.+.+.+. +.....-|+..|..+.. ++++.-++|.|-.++..-
T Consensus 132 ---I~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~-----------~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 132 ---VLKTLKGVWMDPNRSEDSQYGALYCLSILSK-----------NVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp ---HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH-----------HHHHTHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHcCCCCChHHHHHHHHHHHHhHH-----------HHHHHhhhcCHHHHHHHH
Confidence 234455544433 33334445544444433 344556667666665443
No 283
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.00 E-value=42 Score=24.30 Aligned_cols=23 Identities=13% Similarity=0.444 Sum_probs=10.5
Q ss_pred ccccccccCcCceecCCcchhcH
Q 038250 38 RCPISLDLMKDPVTLSTGITYDR 60 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~~cg~~~c~ 60 (444)
.|+-|.+...+.++..-|..|..
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~ 49 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHP 49 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECT
T ss_pred CCccCCCEecceEEEECCccccc
Confidence 45555554444444344444443
No 284
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=25.83 E-value=42 Score=22.28 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=23.8
Q ss_pred ccccccccccCcCceecCCcchhcHHHHHHHHH---hcCCCCCCCCCcccCC
Q 038250 36 HFRCPISLDLMKDPVTLSTGITYDRENIEKWIH---EDGNITCPVTNRVLTS 84 (444)
Q Consensus 36 ~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~---~~~~~~CP~c~~~~~~ 84 (444)
.|.|++|...|..... +..... ....+.|+.|++.+..
T Consensus 4 py~C~~C~k~F~~~~~-----------L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASG-----------LSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHHH-----------HHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHHH-----------HHHHHHHhCCCcCeECCCCCCCcCC
Confidence 3788888888776532 222211 2345789999987754
No 285
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.13 E-value=45 Score=22.60 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=24.6
Q ss_pred CccccccccccCcC-ceecCCcchhcHHHHHHHH
Q 038250 35 NHFRCPISLDLMKD-PVTLSTGITYDRENIEKWI 67 (444)
Q Consensus 35 ~~~~Cpic~~~~~~-Pv~~~cg~~~c~~ci~~~~ 67 (444)
+-|.|..|...+.. +....-|.-||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 44899999988864 3444667889999987655
No 286
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.10 E-value=67 Score=21.81 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=25.5
Q ss_pred CccccccccccCcCc-eecCCcchhcHHHHHHHH
Q 038250 35 NHFRCPISLDLMKDP-VTLSTGITYDRENIEKWI 67 (444)
Q Consensus 35 ~~~~Cpic~~~~~~P-v~~~cg~~~c~~ci~~~~ 67 (444)
+-|.|..|...+..- ....-|.-||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 348999999888643 444678889999998877
No 287
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=25.10 E-value=12 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCccccccccccC---cCceec--CCcchhcHHHHHHHHHhcCCCCCCCCCc
Q 038250 34 PNHFRCPISLDLM---KDPVTL--STGITYDRENIEKWIHEDGNITCPVTNR 80 (444)
Q Consensus 34 ~~~~~Cpic~~~~---~~Pv~~--~cg~~~c~~ci~~~~~~~~~~~CP~c~~ 80 (444)
.++..|.+|...- .+.+++ .|...|...|+.--...++...||.|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4457899998763 334554 5888888888763221356678888853
No 288
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.08 E-value=57 Score=21.99 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=25.4
Q ss_pred CccccccccccCcC-ceecCCcchhcHHHHHHHH
Q 038250 35 NHFRCPISLDLMKD-PVTLSTGITYDRENIEKWI 67 (444)
Q Consensus 35 ~~~~Cpic~~~~~~-Pv~~~cg~~~c~~ci~~~~ 67 (444)
+-|.|..|...+.. .....-|..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 34899999988864 3444668889999988776
No 289
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.99 E-value=41 Score=23.33 Aligned_cols=43 Identities=7% Similarity=-0.013 Sum_probs=31.2
Q ss_pred CccccccccccCcC-ceecCCcchhcH-HHHHHHHHhcCCCCCCCCCcc
Q 038250 35 NHFRCPISLDLMKD-PVTLSTGITYDR-ENIEKWIHEDGNITCPVTNRV 81 (444)
Q Consensus 35 ~~~~Cpic~~~~~~-Pv~~~cg~~~c~-~ci~~~~~~~~~~~CP~c~~~ 81 (444)
+-|.|..|...+.. +....-|..||. .|..+.+ ...|-.|+..
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f----~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF----GPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS----SCCCSSCCCS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh----CccCCCcCCc
Confidence 45899999998876 555567888999 5977644 3457777643
No 290
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.27 E-value=27 Score=24.24 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=25.0
Q ss_pred CCccccccccccCc--CceecCCcchhcHHHHHHHH
Q 038250 34 PNHFRCPISLDLMK--DPVTLSTGITYDRENIEKWI 67 (444)
Q Consensus 34 ~~~~~Cpic~~~~~--~Pv~~~cg~~~c~~ci~~~~ 67 (444)
++-|.|..|...+. +.....-|..||..|..+..
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 34589999999887 44445667889999977654
No 291
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=24.05 E-value=68 Score=21.39 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCcccccc--ccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCC
Q 038250 34 PNHFRCPI--SLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTS 84 (444)
Q Consensus 34 ~~~~~Cpi--c~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~ 84 (444)
...|.|++ |...|.....+ -+. +.... ....+.|+.|+..+..
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l------~~H-~~~h~-~~~~~~C~~C~~~f~~ 61 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDEL------TRH-IRIHT-GQKPFQCRICMRNFSR 61 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHH------HHH-HHHHH-CCCCEECTTTCCEESC
T ss_pred CCccCCcCCCCCCccCCHHHH------HHH-HHhhC-CCCCeECCCCCchhCC
Confidence 44589984 88777654221 111 11111 2345789999887753
No 292
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.03 E-value=87 Score=23.75 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=27.2
Q ss_pred CccccccccccCcC---ceecCCcchhcHHHHHHHH
Q 038250 35 NHFRCPISLDLMKD---PVTLSTGITYDRENIEKWI 67 (444)
Q Consensus 35 ~~~~Cpic~~~~~~---Pv~~~cg~~~c~~ci~~~~ 67 (444)
+-|.|..|...+.+ +....=|..||..|..+.+
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f 64 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG 64 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHH
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHh
Confidence 45999999999974 5555678899999998877
No 293
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.59 E-value=62 Score=22.65 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCccccccccccCc--Cceec-CCcchhcHHHHHHHH
Q 038250 34 PNHFRCPISLDLMK--DPVTL-STGITYDRENIEKWI 67 (444)
Q Consensus 34 ~~~~~Cpic~~~~~--~Pv~~-~cg~~~c~~ci~~~~ 67 (444)
++-|.|..|...+. +...+ .-|.-||..|..+.+
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 34488999998885 45553 667889999988776
No 294
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.27 E-value=4.6 Score=27.45 Aligned_cols=31 Identities=10% Similarity=0.197 Sum_probs=21.7
Q ss_pred cccccccccCcC-----ceecC---CcchhcHHHHHHHH
Q 038250 37 FRCPISLDLMKD-----PVTLS---TGITYDRENIEKWI 67 (444)
Q Consensus 37 ~~Cpic~~~~~~-----Pv~~~---cg~~~c~~ci~~~~ 67 (444)
-.||-|...... -++-. |++.||..|...|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 367777776653 34443 88999998888776
No 295
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.24 E-value=38 Score=22.72 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=22.3
Q ss_pred CccccccccccCcC-ceecCCcchhcHHHHHHHH
Q 038250 35 NHFRCPISLDLMKD-PVTLSTGITYDRENIEKWI 67 (444)
Q Consensus 35 ~~~~Cpic~~~~~~-Pv~~~cg~~~c~~ci~~~~ 67 (444)
+-|.|..|...+.. .....-|..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 30 EHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp TTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHC
T ss_pred CcCEECCCCCCCCCCceEeECCcEECHHHHHHHh
Confidence 34788888887764 3344567778888876544
No 296
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.07 E-value=1.2e+02 Score=21.55 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=25.5
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHH---hcCCCCCCCCCcccCC
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIH---EDGNITCPVTNRVLTS 84 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~---~~~~~~CP~c~~~~~~ 84 (444)
.+.+.|++|...|.... -+.+... ....+.|+.|++.|..
T Consensus 26 ~~~h~C~~Cgk~F~~~~-----------~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFASKG-----------AQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEESSHH-----------HHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcCcHH-----------HHhhhhhhccCCCccCCCCCCCEeCC
Confidence 34478999988887652 2333331 1234689999887753
No 297
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=22.98 E-value=1.1e+02 Score=21.59 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=11.2
Q ss_pred CCCcccccc--ccccCcC
Q 038250 33 TPNHFRCPI--SLDLMKD 48 (444)
Q Consensus 33 ~~~~~~Cpi--c~~~~~~ 48 (444)
-...|.|++ |...|..
T Consensus 12 ~~~~~~C~~~~C~~~f~~ 29 (100)
T 2ebt_A 12 KRRIHYCDYPGCTKVYTK 29 (100)
T ss_dssp SCCCEECCSSSCCCEESC
T ss_pred cCcceEcCCCCCCCcccC
Confidence 344588987 9888764
No 298
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=22.84 E-value=33 Score=36.03 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=35.4
Q ss_pred CCCccccccccccCcCc--------ee--cCCcch--------------------hcHHHHHHHHHhc------CCCCCC
Q 038250 33 TPNHFRCPISLDLMKDP--------VT--LSTGIT--------------------YDRENIEKWIHED------GNITCP 76 (444)
Q Consensus 33 ~~~~~~Cpic~~~~~~P--------v~--~~cg~~--------------------~c~~ci~~~~~~~------~~~~CP 76 (444)
+|+--+|+-|+.-|.|| .+ +.||.. +|..|-.+|-... +...||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 34557999999998886 22 368844 4999999986211 235799
Q ss_pred CCCcccC
Q 038250 77 VTNRVLT 83 (444)
Q Consensus 77 ~c~~~~~ 83 (444)
.|+-.+.
T Consensus 188 ~CGP~l~ 194 (761)
T 3vth_A 188 DCGPSLS 194 (761)
T ss_dssp TTSCCEE
T ss_pred ccCCeeE
Confidence 9986553
No 299
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=22.83 E-value=35 Score=29.43 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=25.5
Q ss_pred CCCCccccccccccCcCceec-CCcchhcHHHHHH
Q 038250 32 TTPNHFRCPISLDLMKDPVTL-STGITYDRENIEK 65 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~-~cg~~~c~~ci~~ 65 (444)
.+-....|++|++.+-++... .=|..+|+.|..+
T Consensus 168 ~~~~~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 168 KNGAKVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp CCCCEEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred CCCCceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 334457899999998887543 4588999999753
No 300
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.78 E-value=1e+02 Score=29.35 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=29.5
Q ss_pred cccccccccCcCceec---CCcchhcHHHHHHHHH--------hcCCCCCCCCCcc
Q 038250 37 FRCPISLDLMKDPVTL---STGITYDRENIEKWIH--------EDGNITCPVTNRV 81 (444)
Q Consensus 37 ~~Cpic~~~~~~Pv~~---~cg~~~c~~ci~~~~~--------~~~~~~CP~c~~~ 81 (444)
..|-+|.+=-. =+.. .|...||..||.+.+. +.....|=.|.-.
T Consensus 94 ~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 94 SYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred ccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 57777776432 1111 5778899999998762 2356889888643
No 301
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=22.48 E-value=1.7e+02 Score=20.51 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCccccccccccC-cCcee--cCCcchhcHHHHHH
Q 038250 34 PNHFRCPISLDLM-KDPVT--LSTGITYDRENIEK 65 (444)
Q Consensus 34 ~~~~~Cpic~~~~-~~Pv~--~~cg~~~c~~ci~~ 65 (444)
+.+..|.+|...- ...+. +.|.-+||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3457899998654 33433 37999999999986
No 302
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.44 E-value=21 Score=28.13 Aligned_cols=29 Identities=14% Similarity=-0.002 Sum_probs=20.4
Q ss_pred cccccccccCcCc---ee-cCCcchhcHHHHHH
Q 038250 37 FRCPISLDLMKDP---VT-LSTGITYDRENIEK 65 (444)
Q Consensus 37 ~~Cpic~~~~~~P---v~-~~cg~~~c~~ci~~ 65 (444)
-.|.+|...|.-- .. -.||..||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4788998877522 22 27999999988543
No 303
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.16 E-value=2.1e+02 Score=20.20 Aligned_cols=44 Identities=11% Similarity=0.002 Sum_probs=29.6
Q ss_pred CCCCccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 32 TTPNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 32 ~~~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
.....-.|.-|.+...+.++..-|..|. ..-+.|-.|+..+...
T Consensus 21 ~~~~~~~C~~C~~~I~~~~~~a~~~~~H----------~~CF~C~~C~~~L~~~ 64 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAVVKARDKYRH----------PECFVCADCNLNLKQK 64 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCCEESSSCEEC----------TTTCCCSSSCCCTTTS
T ss_pred CCCcCCCcccCCCEecccEEEECCceEC----------ccCCEecCCCCCCCCC
Confidence 3444568999998888766556666554 3445788888877653
No 304
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=21.91 E-value=19 Score=26.22 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=23.6
Q ss_pred Cccccccccc-cCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCCCCCccHH
Q 038250 35 NHFRCPISLD-LMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSFEPIPNHT 92 (444)
Q Consensus 35 ~~~~Cpic~~-~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~~l~~n~~ 92 (444)
..+.||-|.. .+.+|- .+...||.|+..+......|+..
T Consensus 26 ~~y~Cp~CG~~~v~r~a-------------------tGiW~C~~Cg~~~aggay~~~t~ 65 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQG-------------------TGIWQCSYCDYKFTGGSYKPETP 65 (83)
T ss_dssp SCEECSSSCCEEEEEEE-------------------TTEEEETTTCCEEECCSSSSSCH
T ss_pred ccCcCCCCCCcceeccC-------------------CCeEECCCCCCEecCCEecccch
Confidence 3578888876 333431 23446888888776655555543
No 305
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.85 E-value=36 Score=23.92 Aligned_cols=20 Identities=5% Similarity=-0.155 Sum_probs=9.1
Q ss_pred ccccccccCcCceecCCcch
Q 038250 38 RCPISLDLMKDPVTLSTGIT 57 (444)
Q Consensus 38 ~Cpic~~~~~~Pv~~~cg~~ 57 (444)
.|+-|.+...+.++..-+..
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~ 36 (79)
T 1x62_A 17 MCDKCGTGIVGVFVKLRDRH 36 (79)
T ss_dssp CCSSSCCCCCSSCEECSSCE
T ss_pred ccccCCCCccCcEEEECcce
Confidence 45555555444433334433
No 306
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.22 E-value=29 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=20.3
Q ss_pred CccccccccccCcCceecCCcchhcHHHHHH
Q 038250 35 NHFRCPISLDLMKDPVTLSTGITYDRENIEK 65 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~ 65 (444)
+-|.|..|...+..-....-|..||..|..+
T Consensus 40 ~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 40 DHFNCANCGKELTADARELKGELYCLPCHDK 70 (79)
T ss_dssp TTSBCSSSCCBCCTTCEEETTEEECHHHHHT
T ss_pred CCCEeCCCCCccCCCCEeECCEEeCHHHHHH
Confidence 3478888877776543334567788877554
No 307
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.80 E-value=7.8 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.337 Sum_probs=22.9
Q ss_pred CccccccccccCcCceecCCcchhcHHHHHHHHHhcCCCCCCCCCcccCCC
Q 038250 35 NHFRCPISLDLMKDPVTLSTGITYDRENIEKWIHEDGNITCPVTNRVLTSF 85 (444)
Q Consensus 35 ~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~~~~~~~CP~c~~~~~~~ 85 (444)
..|.|+.|...|.....+ .+.-.....+.|+.|+..+...
T Consensus 13 k~~~C~~C~k~F~~~~~l-----------~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEAN-----------QLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SEEECSSSCCEEEHHHHH-----------HHEETTTTEEBCSSSCCBCEEC
T ss_pred CCccCCCCCchhccHHHh-----------HhhcCCCCCEECCCCCCccccC
Confidence 348899887776543211 1100012346899999887643
No 308
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.54 E-value=3.3e+02 Score=21.80 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=55.5
Q ss_pred ccchhHhhcCchHHHHHHHHhhcccccccchHHHHHHHHHHHhhcCCChhhhhhcccCCcHHHHHHHHhcC---CHHHHH
Q 038250 159 RNKRCIVDNGAVSVLAEAFETFSKTCLDENVSVLEEILSTLTLLFPLAGEGLTYLGSASSMRCMVWFLKSG---DLSRRR 235 (444)
Q Consensus 159 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~ 235 (444)
.-+..+++.|++..+-.-|+...+++ =.+..++...+.+|. .+..+ +..+.+.| |...|.++... .++.+.
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgs-LP~~~Ir~~lL~~L~-~lPI~---~e~Lk~Sg-lGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKS-MPNIKIRKRLLDVLK-TMKIH---KEHLVTSG-VGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSC-CCCHHHHHHHHHHHH-TSCCC---HHHHHHHC-HHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCC-CCCHHHHHHHHHHHH-HCCCC---HHHhhcCC-CCcchhhhhcCCccCHHHHH
Confidence 35678899999998888886554443 236789999999999 66544 44555555 66666666533 577777
Q ss_pred HHHHHHHHH
Q 038250 236 NAVLVLREI 244 (444)
Q Consensus 236 ~A~~~L~~L 244 (444)
.|-.++..-
T Consensus 126 la~~Li~~W 134 (145)
T 2xpp_A 126 SAKALVQKW 134 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
No 309
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.43 E-value=47 Score=20.16 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=21.5
Q ss_pred CCccccccccccCcCceecCCcchhcHHHHHHHHH---hcCCCCCCCCCc
Q 038250 34 PNHFRCPISLDLMKDPVTLSTGITYDRENIEKWIH---EDGNITCPVTNR 80 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~Pv~~~cg~~~c~~ci~~~~~---~~~~~~CP~c~~ 80 (444)
...|.|++|...|...-. +.++.. ....+.|+.|++
T Consensus 10 ~k~~~C~~C~k~f~~~~~-----------L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYH-----------LNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCSEEETTTTEEESSHHH-----------HHHHGGGSCSCCCCCSCCCCC
T ss_pred CcCeeCCCCCcccCCHHH-----------HHHHHHhcCCCCCccCCCCCC
Confidence 345899998888776422 222221 123478999863
No 310
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.18 E-value=55 Score=22.25 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=24.4
Q ss_pred CccccccccccCcC-ceecCCcchhcHHHHHHHH
Q 038250 35 NHFRCPISLDLMKD-PVTLSTGITYDRENIEKWI 67 (444)
Q Consensus 35 ~~~~Cpic~~~~~~-Pv~~~cg~~~c~~ci~~~~ 67 (444)
+-|.|..|...+.. +....-|..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 34899999888875 4444567889999987655
No 311
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.13 E-value=1.1e+02 Score=25.79 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=27.0
Q ss_pred CCccccccccccCcCc-eecCCcchhcHHHHHHHH
Q 038250 34 PNHFRCPISLDLMKDP-VTLSTGITYDRENIEKWI 67 (444)
Q Consensus 34 ~~~~~Cpic~~~~~~P-v~~~cg~~~c~~ci~~~~ 67 (444)
++-|.|..|...+.+- ....=|..||..|..+.+
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f 66 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKY 66 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHH
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhc
Confidence 3459999999998864 344568899999999877
No 312
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.12 E-value=73 Score=18.76 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=10.5
Q ss_pred ccccccccccCcCc
Q 038250 36 HFRCPISLDLMKDP 49 (444)
Q Consensus 36 ~~~Cpic~~~~~~P 49 (444)
.|.|++|...|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 10 PYSCPVCGLRFKRK 23 (45)
T ss_dssp SSEETTTTEECSCH
T ss_pred CCcCCCCCcccCCH
Confidence 47899888877654
Done!