BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038256
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R1Z|A Chain A, Crystal Structure Of The Bard1 Brct Repeat
pdb|2R1Z|B Chain B, Crystal Structure Of The Bard1 Brct Repeat
Length = 209
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 489 VFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNG 548
V GS LS E++ +L ++ + VTHV+ DA S TLK ++ ILNG
Sbjct: 3 VLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQS---TLKCMLGILNG 59
Query: 549 NWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFS 608
W+LK +W+KAC+ EE YEI EGP+ RL PKLFDG FY
Sbjct: 60 CWILKFEWVKACLRRKVCEQEEKYEI-------PEGPRRSRLNREQLLPKLFDGCYFYLW 112
Query: 609 GNFMLGYKEDLQSLVITAGGTI 630
G F K++L LV GG I
Sbjct: 113 GTFKHHPKDNLIKLVTAGGGQI 134
>pdb|2NTE|A Chain A, Crystal Structure Of The Bard1 Brct Domains
pdb|2NTE|B Chain B, Crystal Structure Of The Bard1 Brct Domains
Length = 210
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 489 VFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNG 548
V GS LS E++ +L ++ + VTHV+ DA S TLK ++ ILNG
Sbjct: 4 VLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQS---TLKCMLGILNG 60
Query: 549 NWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFS 608
W+LK +W+KAC+ EE YEI EGP+ RL PKLFDG FY
Sbjct: 61 CWILKFEWVKACLRRKVCEQEEKYEI-------PEGPRRSRLNREQLLPKLFDGCYFYLW 113
Query: 609 GNFMLGYKEDLQSLVITAGGTI 630
G F K++L LV GG I
Sbjct: 114 GTFKHHPKDNLIKLVTAGGGQI 135
>pdb|3FA2|A Chain A, Crystal Structure Of The Brca1 Associated Ring Domain
(Bard1) Tandem Brct Domains
pdb|3FA2|B Chain B, Crystal Structure Of The Brca1 Associated Ring Domain
(Bard1) Tandem Brct Domains
Length = 218
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 489 VFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNG 548
V GS LS E++ +L ++ + VTHV+ DA S TLK ++ ILNG
Sbjct: 12 VLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQS---TLKCMLGILNG 68
Query: 549 NWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFS 608
W+LK +W+KAC+ EE YEI EGP+ RL PKLFDG FY
Sbjct: 69 CWILKFEWVKACLRRKVCEQEEKYEI-------PEGPRRSRLNREQLLPKLFDGCYFYLW 121
Query: 609 GNFMLGYKEDLQSLVITAGGTI 630
G F K++L LV GG I
Sbjct: 122 GTFKHHPKDNLIKLVTAGGGQI 143
>pdb|2ING|X Chain X, X-Ray Structure Of The Brca1 Brct Mutant M1775k
Length = 213
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 9 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 68
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 69 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 125
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 126 FTNKPTDQLEWMVQLCGASVVK 147
>pdb|1N5O|X Chain X, Structural Consequences Of A Cancer-Causing Brca1-Brct
Missense Mutation
Length = 214
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 10 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 69
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 70 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 126
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 127 FTNRPTDQLEWMVQLCGASVVK 148
>pdb|1L0B|A Chain A, Crystal Structure Of Rat Brca1 Tandem-Brct Region
Length = 229
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ +E +++ +F + ++ THVI TDA+ C RTLK + I G W++
Sbjct: 13 SGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIV 72
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD-----NHGCEEGPKTGRLRALNKAPKLFDGLSFYF 607
W+ ++ + +E+ D NH +GP+ R+ KLF+GL Y
Sbjct: 73 SYSWVIKSIQERKLLSVHEFEVKGDVVTGSNH---QGPR----RSRESQEKLFEGLQIYC 125
Query: 608 SGNFMLGYKEDLQSLVITAGGTIWK 632
F K++L+ ++ G ++ K
Sbjct: 126 CEPFTNMPKDELERMLQLCGASVVK 150
>pdb|1T2U|A Chain A, Structural Basis Of Phosphopeptide Recognition By The Brct
Domain Of Brca1: Structure Of Brca1 Missense Variant
V1809f
Length = 214
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 10 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 69
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 70 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 126
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 127 FTNMPTDQLEWMVQLCGASVVK 148
>pdb|1JNX|X Chain X, Crystal Structure Of The Brct Repeat Region From The
Breast Cancer Associated Protein, Brca1
pdb|1T15|A Chain A, Crystal Structure Of The Brca1 Brct Domains In Complex
With The Phosphorylated Interacting Region From Bach1
Helicase
pdb|1T29|A Chain A, Crystal Structure Of The Brca1 Brct Repeats Bound To A
Phosphorylated Bach1 Peptide
pdb|1T2V|A Chain A, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|B Chain B, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|C Chain C, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|D Chain D, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|E Chain E, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1Y98|A Chain A, Structure Of The Brct Repeats Of Brca1 Bound To A Ctip
Phosphopeptide
Length = 214
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 10 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 69
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 70 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 126
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 127 FTNMPTDQLEWMVQLCGASVVK 148
>pdb|3PXE|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|B Chain B, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|C Chain C, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|D Chain D, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
Length = 214
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 10 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 69
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 70 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 126
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 127 FTNMPTDQLEWMVQLCGASVVK 148
>pdb|3PXD|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1835p
Length = 214
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 10 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 69
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 70 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 126
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 127 FTNMPTDQLEWMVQLCGASVVK 148
>pdb|3K15|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K16|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With A Free Carboxy
C-Terminus
Length = 215
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 11 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 70
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 71 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 127
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 128 FTNMPTDQLEWMVQLCGASVVK 149
>pdb|3K0H|A Chain A, The Crystal Structure Of Brca1 Brct In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-terminus
pdb|3K0K|A Chain A, Crystal Structure Of Brca1 Brct In Complex With A Minimal
Recognition Tetrapeptide With A Free Carboxy C-Terminus
Length = 215
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 11 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 70
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 71 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 127
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 128 FTNMPTDQLEWMVQLCGASVVK 149
>pdb|3PXA|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: G1656d
Length = 214
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 10 SDLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 69
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 70 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 126
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 127 FTNMPTDQLEWMVQLCGASVVK 148
>pdb|3COJ|X Chain X, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|A Chain A, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|B Chain B, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|C Chain C, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|D Chain D, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|E Chain E, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|F Chain F, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|G Chain G, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
Length = 235
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C RTLK + I G WV+
Sbjct: 31 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 90
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 91 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 147
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 148 FTNMPTDQLEWMVQLCGASVVK 169
>pdb|3PXC|X Chain X, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1699q
Length = 214
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C +TLK + I G WV+
Sbjct: 10 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCEQTLKYFLGIAGGKWVV 69
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 70 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 126
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 127 FTNMPTDQLEWMVQLCGASVVK 148
>pdb|3PXB|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: T1700a
Length = 214
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ EE +L+ +F + ++ THV+ TDA+ C R LK + I G WV+
Sbjct: 10 SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERALKYFLGIAGGKWVV 69
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGN 610
W+ ++ + E +E+ D N +GPK R ++ K+F GL G
Sbjct: 70 SYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGP 126
Query: 611 FMLGYKEDLQSLVITAGGTIWK 632
F + L+ +V G ++ K
Sbjct: 127 FTNMPTDQLEWMVQLCGASVVK 148
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCES---ECPLCKS 81
+ KL E+ CP+CL++ +P+ + C H FC CI + + +CPLCK+
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKT 65
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 40 LKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
L+CP+CL L P+ CDHIFC C+ + + S+CPLCK+ T L+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIP------RSAQCESECPLCKSQCTYA 86
L+ + E+ CP+CL L P+ C+H FC +CI R+ + CP+C+ +
Sbjct: 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72
Query: 87 DLRPLAFLENII 98
+L+P + NI+
Sbjct: 73 NLKPNLHVANIV 84
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSA------QCESECPLCKSQCTYADLRPLA 92
E+ CP+CL L ++PL L C H FC +C+ + + ES CP+C+ ++RP
Sbjct: 19 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78
Query: 93 FLENII 98
+ NI+
Sbjct: 79 HVANIV 84
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCES---ECPLC 79
+ KL E+ CP+CL++ +P+ + C H FC CI + + +CPLC
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ-------CESECPLCKSQCTYADLRPL 91
E+ CP+CL L + PL L C H C +CI S + +S CP+C ++ L+
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71
Query: 92 AFLENII 98
L NI+
Sbjct: 72 QHLANIV 78
>pdb|3SHT|A Chain A, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHT|B Chain B, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHT|C Chain C, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHV|A Chain A, Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma
H2ax Complex
pdb|3SHV|B Chain B, Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma
H2ax Complex
Length = 206
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 521 NVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEIN 575
THV++ G RTL VL+ I G WVL DW+ +E + + EEP+E++
Sbjct: 53 TTTHVLS-----GKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELS 102
>pdb|3SZM|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|B Chain B, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|C Chain C, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|D Chain D, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|E Chain E, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|F Chain F, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|G Chain G, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|H Chain H, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3T1N|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Cdc27 Phosphopeptide
pdb|3T1N|B Chain B, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Cdc27 Phosphopeptide
pdb|3U3Z|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With An H2a.X Peptide Phosphorylated
At Ser139 And Tyr142
Length = 199
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 521 NVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEIN 575
THV++ G RTL VL+ I G WVL DW+ +E + + EEP+E++
Sbjct: 46 TTTHVLS-----GKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELS 95
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3
Ubiquitin- Protein Ligase Uhrf1
Length = 124
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 10 IWNSTMADSAANSKRSFNPLVLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS 69
+WN +A S + S +P L L K+ +C C L RP+ C H C C+ RS
Sbjct: 24 LWNEVLA-SLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRS 82
Query: 70 AQCES-ECPLCK 80
+ + CP C+
Sbjct: 83 FRAQVFSCPACR 94
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 41 KCPLCLNLFSR-PLLLPCDHIFCNSCIPRSAQCESECPLCK 80
+CP+CL S + LPC H FC CI R + CPLCK
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|3AL2|A Chain A, Crystal Structure Of Topbp1 Brct78
Length = 235
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 486 KEWVFCGSALSVEEKL----LLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKV 541
K+++F S+L+ +E++ L+ + G + V + + P TH++ G R K
Sbjct: 8 KQYIFQLSSLNPQERIDYCHLIEKLGGL--VIEKQCFDPTCTHIVV-----GHPLRNEKY 60
Query: 542 LMAILNGNWVLKIDWIKACMEAMNPVGEEPYE 573
L ++ G WVL +++AC A + V EE YE
Sbjct: 61 LASVAAGKWVLHRSYLEACRTAGHFVQEEDYE 92
>pdb|3AL3|A Chain A, Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Complex
Length = 235
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 486 KEWVFCGSALSVEEKL----LLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKV 541
K+++F S+L+ +E++ L+ + G + V + + P TH++ G R K
Sbjct: 8 KQYIFQLSSLNPQERIDYCHLIEKLGGL--VIEKQCFDPTCTHIVV-----GHPLRNEKY 60
Query: 542 LMAILNGNWVLKIDWIKACMEAMNPVGEEPYE 573
L ++ G WVL +++AC A + V EE YE
Sbjct: 61 LASVAAGKWVLHRSYLEACRTAGHFVQEEDYE 92
>pdb|3L40|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains
pdb|3L40|B Chain B, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains
pdb|3L41|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains In
Complex With Phosphorylated H2a
Length = 220
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 523 THVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCE 582
TH+IA RT K L +I G V+ +DWI +C++ V EEPY +N E
Sbjct: 40 THLIAP-----RILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYLLNDPEKELE 94
Query: 583 EG--PKTGRLRALNKAPKLFDGLSFYFSG 609
G ++ RA + P L + Y +
Sbjct: 95 LGCTLESALKRARAQGPSLLEDYVVYLTS 123
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCK 80
EL+C +C F + L C H FC+ CI + + ECP+C+
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCK 80
EL+C +C F + L C H FC+ CI + + ECP+C+
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCK 80
EL+C +C F + L C H FC+ CI + + ECP+C+
Sbjct: 64 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 105
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYAD 87
+++L E +C +C++ + L+LPC H FC CI + + CP+C+ Q T A+
Sbjct: 9 VKQLTDEEECCICMDGRA-DLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 31 LHLQKLALELKCPLCLNLF-SRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLR 89
+ + +L L C LC F ++ C H FC +CI R + CP+C Q R
Sbjct: 3 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV--HKTR 60
Query: 90 PL 91
PL
Sbjct: 61 PL 62
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
L +L L+C C N+ P+ L C+HIFC++C+ S + CP+C + DL+
Sbjct: 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCV--SDCIGTGCPVCYTPAWIQDLKIN 73
Query: 92 AFLENIIAIYKGL 104
L+++I + L
Sbjct: 74 RQLDSMIQLCSKL 86
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 31 LHLQKLALELKCPLCLNLF-SRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLR 89
+ + +L L C LC F ++ C H FC +CI R + CP+C Q R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV--HKTR 64
Query: 90 PL 91
PL
Sbjct: 65 PL 66
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 31 LHLQKLALELKCPLCLNLF-SRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLR 89
+ + +L L C LC F ++ C H FC +CI R + CP+C Q R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV--HKTR 64
Query: 90 PL 91
PL
Sbjct: 65 PL 66
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR 68
L+ L +E C +CL P+++ C H FC +CI R
Sbjct: 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITR 44
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 40 LKCPLCLNLFSRPLL-------LPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
+ CP+C++ +S + C H+FC+ C+ S + + CP C+ + + P+
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 40 LKCPLCLNLFSRPLL-------LPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
+ CP+C++ +S + C H+FC+ C+ S + + CP C+ + + P+
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 40 LKCPLCLNLFSRPLL-------LPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
+ CP+C++ +S + C H+FC+ C+ S + + CP C+ + + P+
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 40 LKCPLCLNLFSRPLL-------LPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
+ CP+C++ +S + C H+FC+ C+ S + + CP C+ + + P+
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 29 LVLHLQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQC-ESECPLCKSQ-CTY 85
+V+ + L EL CP+CL++ + C H FC CI + + ECP C+ + +
Sbjct: 44 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103
Query: 86 ADLRPLAFLENIIA-IYKGLD 105
LRP + +I+ IY D
Sbjct: 104 RSLRPDPNFDALISKIYPSRD 124
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 40 LKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENII 98
L+C +C F+ +++P C H +C+ CI + +++CP C T DL+ L+ ++
Sbjct: 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELV 82
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 36 LALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ-CESECPL 78
L + +CP+CL + PC H FC +CI +S + +CP+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 36 LALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ-CESECPL 78
L + +CP+CL + PC H FC +CI +S + +CP+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 41 KCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQ 82
+C +CL P+ LPC H+FC C+ ++ C LC+ +
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQE 58
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKS 81
L++L E C +CL+ + +PC H+ C C P CP+C++
Sbjct: 6 QLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGL----QLCPICRA 51
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESE-CPLCKSQ 82
E +C +C+ + P+ LPC+H C C + + S CP C+ +
Sbjct: 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRR 59
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 28 PLVLHLQKLALELKCPLCLNLFSRPLLLPCDH-IFCNSCIPRSAQCESECPLCKS 81
P+ L++L E C +C++ + +PC H + C C P +CP+C+S
Sbjct: 13 PVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL----RKCPICRS 63
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 38 LELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLC 79
+ +C +C F P++ C H FC SC + C +C
Sbjct: 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 55
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 41 KCPLCLNLFSRPLLLPCDHIFCNSC-IPRSAQCESECPLCK------SQCTYADL 88
KC L + ++ R ++PC H+FC C I + + CP C QCT L
Sbjct: 6 KCGLPIKVYGR--MIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSL 58
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 29 LVLHLQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQC-ESECPLCKSQ-CTY 85
+V+ + L EL CP+CL++ + C H FC CI + + ECP C+ + +
Sbjct: 43 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 102
Query: 86 ADLRPLAFLENIIA-IY 101
LRP + +I+ IY
Sbjct: 103 RSLRPDPNFDALISKIY 119
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 39 ELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQCESE---CPLCKSQCTYADLRPLAFL 94
EL C +C ++ + +++P C + +C+ CI R+A ES+ CP C D+ P A +
Sbjct: 13 ELLCLICKDIMTDAVVIPCCGNSYCDECI-RTALLESDEHTCPTCHQN----DVSPDALI 67
Query: 95 EN 96
N
Sbjct: 68 AN 69
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 40 LKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCE-SECPLCKSQCTYADLR-PLAFLENI 97
+ C +C ++ + P+ C H+FC CI R + S CP C+ C DL P+ NI
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI 83
Query: 98 I 98
+
Sbjct: 84 L 84
>pdb|3T1E|A Chain A, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|B Chain B, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|E Chain E, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|F Chain F, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
Length = 537
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 20/120 (16%)
Query: 26 FNPLVLHLQKL---ALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQ 82
F+P +L+ + L P N F+RP +PC Q + CP
Sbjct: 387 FSPALLYPMTVNNNTATLHSPYTFNAFTRPGSVPC-------------QASARCPNSCVT 433
Query: 83 CTYADLRPLAFLEN--IIAIYKGL--DASPSSNLLQPVYSAFGRHQEDNSSSGQSLSANT 138
Y D PL F N + ++ + D NL+ V+ R + SS ++ +A T
Sbjct: 434 GVYTDPYPLVFHRNHTLRGVFGTMLDDEQARLNLVSAVFDNISRSRITRVSSSRTKAAYT 493
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 32 HLQKLALELKCPLCLNLFS----RPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCT 84
+L L L+CP+C+ F+ RP LL C H C C+ + S+ CP C
Sbjct: 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67
Query: 85 YADLRPLAFLENIIAIYKG 103
L L +N+ + G
Sbjct: 68 ITSLTQLT--DNLTVLKSG 84
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 36 LALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ 71
L + +CP+CL + PC H FC +CI +S +
Sbjct: 22 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIR 57
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 39 ELKCPLCLNLFSR---PLLLPCDHIFCNSCIPRSAQCESECPLCK 80
E+ CP+C + + + LPC H F C+ Q CP+C+
Sbjct: 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIF-CNSCIPRSAQCESECPLCKSQCTY 85
L++L E C +C++ + +PC H+ C C A+ +CP+C + T+
Sbjct: 18 QLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQC----AEAVDKCPMCYTVITF 68
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 29 LVLHLQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQC-ESECPLCKSQ 82
+V+ + L EL CP+CL++ + C H FC CI + + ECP C+ +
Sbjct: 24 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKK 79
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 40 LKCPLC---LNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84
L+CP+C L LPC+H+F +SCI + CP+C+ T
Sbjct: 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIF-CNSCIPRSAQCESECPLCKSQCTY 85
L++L E C +C++ + +PC H+ C C A+ +CP+C + T+
Sbjct: 17 QLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQC----AEAVDKCPMCYTVITF 67
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIF-CNSCIPRSAQCESECPLCKSQCTY 85
L++L E C +C++ + +PC H+ C C A+ +CP+C + T+
Sbjct: 17 QLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQC----AEAVDKCPMCYTVITF 67
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 41 KCPLCLNLFSRP---LLLPCDHIFCNSCIPRSAQCESECPLCK 80
KC +CL++ LPC H+F C+ + +CP+C+
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 36 LALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ 71
L + +CP+CL + PC H FC +CI +S +
Sbjct: 3 LGSKYECPICLMALREAVQTPCGHRFCKACIIKSIR 38
>pdb|3SQD|A Chain A, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex
pdb|3SQD|B Chain B, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex
Length = 219
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 523 THVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEIN------L 576
TH+IA+ TRT+K L AI ++ +W++ C + E+ Y + L
Sbjct: 51 THLIAS-----KVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILRDAEAEVL 105
Query: 577 DNHGCEEGPKTGRLRALNKAPKLF 600
+ EE K + L KA +
Sbjct: 106 FSFSLEESLKRAHVSPLFKAKYFY 129
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 481 SPNKAKEWVFCGSALSVEEKLLLVR-FGNMIGVPVSKFWKPNVTHVIAATDAKGSC 535
S NK + + +CG E K+ LV G IG ++K +V+HVI + + SC
Sbjct: 31 SENKKENYYYCG-----ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSC 81
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 32 HLQKLALELKCPLCLNLFSRPLLLPCDH-IFCNSCIPRSAQCESECPLCK 80
L++L E C +C++ + +PC H + C C P +CP+C+
Sbjct: 288 QLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICR 333
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCES-ECPLCK 80
L+KL C C L +P+ C H C C+ RS + + CP C+
Sbjct: 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACR 120
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 42 CPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESE-CPLCKSQ 82
C +C + PC H+ C SC+ + E + CP C+ +
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCE 68
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 42 CPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESE-CPLCKSQ 82
C +C + PC H+ C SC+ + E + CP C+ +
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCE 71
>pdb|3P5T|L Chain L, Cfim25-Cfim68 Complex
pdb|3P5T|M Chain M, Cfim25-Cfim68 Complex
pdb|3P5T|N Chain N, Cfim25-Cfim68 Complex
pdb|3P5T|O Chain O, Cfim25-Cfim68 Complex
pdb|3P5T|P Chain P, Cfim25-Cfim68 Complex
pdb|3P5T|Q Chain Q, Cfim25-Cfim68 Complex
pdb|3P6Y|C Chain C, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|D Chain D, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|G Chain G, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|H Chain H, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|K Chain K, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|L Chain L, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|O Chain O, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|P Chain P, Cf Im25-Cf Im68-Uguaa Complex
Length = 90
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 125 EDNSSSGQSLSANTLVQVSFNNSACDGQKGKGFELTGMGEN-----------KRD-GGQN 172
ED + + SL N ++++ F + +GQ KGF L G+G KR+ GQN
Sbjct: 16 EDLTEAVHSLGVNDILEIKFFENRANGQS-KGFALVGVGSEASSKKLMDLLPKRELHGQN 74
Query: 173 P 173
P
Sbjct: 75 P 75
>pdb|3Q2S|C Chain C, Crystal Structure Of Cfim68 RrmCFIM25 COMPLEX
pdb|3Q2S|D Chain D, Crystal Structure Of Cfim68 RrmCFIM25 COMPLEX
pdb|3Q2T|C Chain C, Crystal Structure Of Cfim68 RrmCFIM25RNA COMPLEX
pdb|3Q2T|D Chain D, Crystal Structure Of Cfim68 RrmCFIM25RNA COMPLEX
Length = 229
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 125 EDNSSSGQSLSANTLVQVSFNNSACDGQKGKGFELTGMGEN-----------KRD-GGQN 172
ED + + SL N ++++ F + +GQ KGF L G+G KR+ GQN
Sbjct: 83 EDLTEAVHSLGVNDILEIKFFENRANGQS-KGFALVGVGSEASSKKLMDLLPKRELHGQN 141
Query: 173 P 173
P
Sbjct: 142 P 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,708,692
Number of Sequences: 62578
Number of extensions: 861856
Number of successful extensions: 1679
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1606
Number of HSP's gapped (non-prelim): 93
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)