BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038256
(691 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 316 bits (809), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 166/376 (44%), Positives = 214/376 (56%), Gaps = 32/376 (8%)
Query: 323 SCANNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAG 382
S + C FCQ S +E +G M HY G+PV + S VIHVH C EWAP VY+
Sbjct: 557 SLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEWAPNVYFND 616
Query: 383 DTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVL 442
T+ NL EL R ++ CS CGLKGAALGCY +SC+ S+HV CA I ECRWD F++L
Sbjct: 617 LTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRWDNVKFVML 676
Query: 443 CPVHSSVKFPIEKSGHRS---IRNRAAPLQLTPQEPS------------FWGSSPNKAKE 487
CP+ +S+K P E++ + R PL P++ S F G S K+
Sbjct: 677 CPLDASIKLPCEEANSKDRKCKRTPKEPLHSQPKQVSGKANIRELHIKQFHGFS----KK 732
Query: 488 WVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILN 547
V S L+VEEK ++ F + GV +SK W VTHVIA+ + G+C RTLK +MAIL
Sbjct: 733 LVLSCSGLTVEEKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILE 792
Query: 548 GNWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYF 607
G W+L IDWIKACM+ V EEPYEI +D HG EGP GR RAL K PKLF GL FY
Sbjct: 793 GKWILTIDWIKACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKKPKLFTGLKFYI 852
Query: 608 SGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLDFPEGSLIGE 667
G+F L YK LQ L++ AGGTI + +D+ S ++V S+
Sbjct: 853 MGDFELAYKGYLQDLIVAAGGTILRRR-----PVSSDDNEASTIVVF--------SVEPS 899
Query: 668 EVSTIWNRLNEAEELA 683
+ T+ R ++AE LA
Sbjct: 900 KKKTLTQRRSDAEALA 915
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
HL+++ ELKCP+CL+L++ + L C+H+FCN+CI +S + ++ CP+CK ++R
Sbjct: 6 HLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGA 65
Query: 92 AFLENIIAIYKGL-DAS 107
++++++IYK + DAS
Sbjct: 66 PHMDSLVSIYKNMEDAS 82
>sp|Q9QZH2|BARD1_RAT BRCA1-associated RING domain protein 1 OS=Rattus norvegicus
GN=Bard1 PE=2 SV=1
Length = 768
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 484 KAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLM 543
K+ V GS LS +++ LL + ++ + VTHVI + S TLK ++
Sbjct: 557 KSGPLVLIGSGLSSQQQKLLSKLETVLKAKKCAEFDNTVTHVIVPDEEAQS---TLKCML 613
Query: 544 AILNGNWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGL 603
ILNG WVLK DW+KAC+++ EE YE+ GP+ RL PKLFDG
Sbjct: 614 GILNGCWVLKFDWVKACLDSQEREQEEKYEV-------PGGPQRSRLNREQLLPKLFDGC 666
Query: 604 SFYFSGNFMLGYKEDLQSLVITAGGTI 630
F+ GNF KEDL L+ AGG I
Sbjct: 667 YFFLGGNFKHHPKEDLLKLIAAAGGRI 693
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
L +L L+C C N+ P+ L C+HIFC+ CI S S CP+C + DL+
Sbjct: 35 LARLEKLLRCSRCANILREPVCLGGCEHIFCSGCI--SDCVGSGCPVCHTPAWILDLKIN 92
Query: 92 AFLENIIAIYKGL 104
L+++I +Y L
Sbjct: 93 RQLDSMIQLYSKL 105
>sp|O70445|BARD1_MOUSE BRCA1-associated RING domain protein 1 OS=Mus musculus GN=Bard1
PE=2 SV=1
Length = 765
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 452 PIEKSGHRSIRNRAAPLQLTPQEPSFWGSSP--------NKAKEWVFCGSALSVEEKLLL 503
P++ + + +IR+ L L P+E + +S K VF GS LS +++ +L
Sbjct: 518 PVDYTDNENIRS----LLLLPEENESFSTSQCSIVNTGQRKNGPLVFIGSGLSSQQQKML 573
Query: 504 VRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEA 563
+ ++ + VTHVI + S TLK ++ IL+G W+LK DW+KAC+++
Sbjct: 574 SKLETVLKAKKCMEFDSTVTHVIVPDEEAQS---TLKCMLGILSGCWILKFDWVKACLDS 630
Query: 564 MNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLV 623
EE YE+ GP+ RL PKLFDG F+ GNF ++DL L+
Sbjct: 631 KVREQEEKYEV-------PGGPQRSRLNREQLLPKLFDGCYFFLGGNFKHHPRDDLLKLI 683
Query: 624 ITAGGTI 630
AGG +
Sbjct: 684 AAAGGKV 690
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
L +L L+C C N+ P+ L C+HIFC+ CI S S CP+C + DL+
Sbjct: 35 LARLEKLLRCSRCANILKEPVCLGGCEHIFCSGCI--SDCVGSGCPVCYTPAWILDLKIN 92
Query: 92 AFLENIIAIYKGL 104
L+++I + L
Sbjct: 93 RQLDSMIQLSSKL 105
>sp|Q99728|BARD1_HUMAN BRCA1-associated RING domain protein 1 OS=Homo sapiens GN=BARD1
PE=1 SV=2
Length = 777
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 489 VFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNG 548
V GS LS E++ +L ++ + VTHV+ DA S TLK ++ ILNG
Sbjct: 571 VLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQS---TLKCMLGILNG 627
Query: 549 NWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFS 608
W+LK +W+KAC+ EE YEI EGP+ RL PKLFDG FY
Sbjct: 628 CWILKFEWVKACLRRKVCEQEEKYEI-------PEGPRRSRLNREQLLPKLFDGCYFYLW 680
Query: 609 GNFMLGYKEDLQSLVITAGGTI 630
G F K++L LV GG I
Sbjct: 681 GTFKHHPKDNLIKLVTAGGGQI 702
Score = 39.7 bits (91), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91
L +L L+C C N+ P+ L C+HIFC++C+ S + CP+C + DL+
Sbjct: 41 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCV--SDCIGTGCPVCYTPAWIQDLKIN 98
Query: 92 AFLENIIAI 100
L+++I +
Sbjct: 99 RQLDSMIQL 107
>sp|P20659|TRX_DROME Histone-lysine N-methyltransferase trithorax OS=Drosophila
melanogaster GN=trx PE=1 SV=4
Length = 3726
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 20/140 (14%)
Query: 326 NNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIH---VHSKCIEWAPQVYYAG 382
+ +C FC+ S G+ + GEEA + H VH+ C W+ +V+
Sbjct: 1733 DTRMCLFCRKS--------------GEGLSGEEARLLYCGHDCWVHTNCAMWSAEVFEEI 1778
Query: 383 D-TVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLV 441
D +++N+ + +ARG +KC+ CG +GA +GC VRSC YH PCA I +C + T+ +
Sbjct: 1779 DGSLQNVHSAVARGRMIKCTVCGNRGATVGCNVRSCGEHYHYPCARSI-DCAFLTDKSM- 1836
Query: 442 LCPVHSSVKFPIEKSGHRSI 461
CP H+ ++ +G S+
Sbjct: 1837 YCPAHAKNGNALKANGSPSV 1856
>sp|Q24742|TRX_DROVI Histone-lysine N-methyltransferase trithorax OS=Drosophila virilis
GN=trx PE=3 SV=1
Length = 3828
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 20/123 (16%)
Query: 329 ICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIH---VHSKCIEWAPQVYYAGD-T 384
+C FC+ S G+ + GEEA + H VH C W+ +V+ D +
Sbjct: 1710 VCLFCRKS--------------GEGLSGEEARLLYCGHDCWVHINCAMWSAEVFEEIDGS 1755
Query: 385 VKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCP 444
++N+ + +ARG +KC+ CG +GA +GC V+SC YH PCA I +C + T+ + CP
Sbjct: 1756 LQNVHSAVARGRMIKCTVCGNRGATVGCNVKSCGEHYHYPCARTI-DCAFLTDKSM-YCP 1813
Query: 445 VHS 447
H+
Sbjct: 1814 AHA 1816
>sp|Q9EPQ8|TCF20_MOUSE Transcription factor 20 OS=Mus musculus GN=Tcf20 PE=1 SV=2
Length = 1983
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 367 VHSKCIEWAPQVYYAGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCA 426
VH CI WA +Y + L+ L ++KCS C GA LGCY + C YH PCA
Sbjct: 1881 VHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCA 1940
Query: 427 LEISECRWDTENFLVLCPVH 446
++ ++C ENF V CP H
Sbjct: 1941 ID-ADCLLHEENFSVRCPKH 1959
>sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 OS=Homo sapiens GN=TCF20 PE=1 SV=3
Length = 1960
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 367 VHSKCIEWAPQVYYAGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCA 426
VH CI WA +Y + L+ L ++KCS C GA LGCY + C YH PCA
Sbjct: 1854 VHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCA 1913
Query: 427 LEISECRWDTENFLVLCPVH 446
++ ++C ENF V CP H
Sbjct: 1914 ID-ADCLLHEENFSVRCPKH 1932
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Query: 473 QEPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAK 532
++P S+ K S L+ EE +L+ +F + ++ THV+ TDA+
Sbjct: 1635 EKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAE 1694
Query: 533 GSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRL 590
C RTLK + I G WV+ W+ ++ + E +E+ D N +GPK R
Sbjct: 1695 FVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR- 1753
Query: 591 RALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632
++ K+F GL G F + L+ +V G ++ K
Sbjct: 1754 --ESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVK 1793
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
+QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK+ T L+
Sbjct: 18 MQKI---LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca mulatta
GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Query: 473 QEPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAK 532
+ P S+ K S L+ EE +L+ +F + ++ THV+ TDA+
Sbjct: 1635 ENPKLTASTERVNKRMSLVVSGLTPEEFMLVYKFARRYHIALTNLISEETTHVVMKTDAE 1694
Query: 533 GSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRL 590
C RTLK + I G WV+ W+ ++ + E +E+ D N +GPK R
Sbjct: 1695 FVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR- 1753
Query: 591 RALNKAP--KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632
++P K+F GL G F + L+ +V G ++ K
Sbjct: 1754 ----ESPDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVK 1793
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
+QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK+ T L+
Sbjct: 18 MQKI---LECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens GN=BRCA1
PE=1 SV=2
Length = 1863
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Query: 473 QEPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAK 532
++P S+ K S L+ EE +L+ +F + ++ THV+ TDA+
Sbjct: 1635 EKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAE 1694
Query: 533 GSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRL 590
C RTLK + I G WV+ W+ ++ + E +E+ D N +GPK R
Sbjct: 1695 FVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR- 1753
Query: 591 RALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632
++ K+F GL G F + L+ +V G ++ K
Sbjct: 1754 --ESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVK 1793
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
+QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK+ T L+
Sbjct: 18 MQKI---LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo pygmaeus
GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Query: 473 QEPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAK 532
++P S+ K S L+ EE +L+ +F + ++ THV+ TDA+
Sbjct: 1635 EKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAE 1694
Query: 533 GSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRL 590
C RTLK + I G WV+ W+ ++ + E +E+ D N +GPK R
Sbjct: 1695 FVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR- 1753
Query: 591 RALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632
++ K+F GL G F + L+ +V G ++ K
Sbjct: 1754 --ESQDRKIFRGLEICCYGPFTNMPTDQLEWIVQLCGASVVK 1793
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
+QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK+ T L+
Sbjct: 18 MQKI---LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 5/165 (3%)
Query: 470 LTPQEPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAAT 529
++ ++P S+ K S L+ +E +L+ +F V ++ THVI T
Sbjct: 1625 MSKEKPEVISSTERSKKRLSMVASGLTPKELMLVQKFARKHHVTLTNLITEETTHVIMKT 1684
Query: 530 DAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKT 587
D + C RTLK + I G WV+ W+ ++ + E +E+ D N +GPK
Sbjct: 1685 DPEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKEGKMLDEHDFEVRGDVVNGRNHQGPKR 1744
Query: 588 GRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632
R ++ K+F GL G F + L+ +V G ++ K
Sbjct: 1745 AR---ESRDKKIFKGLEICCYGPFTNMPTDQLEWMVQLCGASVVK 1786
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
+QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK+ T L+
Sbjct: 18 MQKI---LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
Query: 90 P-LAFLENIIAIYKGLDASPSSNLLQPVYSAFGRHQEDNSSSGQSLSANTLVQVSFNNSA 148
F + + + K + A LQ S +EDNS + + + + N A
Sbjct: 75 ESTRFSQLVEELLKIIHAFELDTGLQFANSYNFSRKEDNSPEHLKEEVSIIQSMGYRNRA 134
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Query: 473 QEPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAK 532
++P S+ K S L+ EE +L+ +F + ++ THV+ TDA+
Sbjct: 1635 EKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAE 1694
Query: 533 GSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRL 590
C RTLK + I G WV+ W+ ++ + E +E+ D N +GPK R
Sbjct: 1695 FVCERTLKYFLGIAGGKWVVSYFWVTQSIKEGKMLNEHDFEVRGDVVNGRNHQGPKRAR- 1753
Query: 591 RALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632
++ K+F GL G F + L+ +V G ++ K
Sbjct: 1754 --ESQDRKIFRGLDICCYGPFTNMPTDQLEWMVQLCGASVVK 1793
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
+QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK+ T L+
Sbjct: 18 MQKI---LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552
S L+ +E +++ +F + ++ THVI TDA+ C RTLK + I G W++
Sbjct: 1601 SGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIV 1660
Query: 553 KIDWIKACMEAMNPVGEEPYEINLD-----NHGCEEGPKTGRLRALNKAPKLFDGLSFYF 607
W+ ++ + +E+ D NH +GP+ R+ KLF+GL Y
Sbjct: 1661 SYSWVIKSIQERKLLSVHEFEVKGDVVTGSNH---QGPR----RSRESQEKLFEGLQIYC 1713
Query: 608 SGNFMLGYKEDLQSLVITAGGTIWK 632
F K++L+ ++ G ++ K
Sbjct: 1714 CEPFTNMPKDELERMLQLCGASVVK 1738
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 30 VLH-LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTY 85
VLH +QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK++ T
Sbjct: 14 VLHAMQKI---LECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITK 70
Query: 86 ADLRPLAFLENII-AIYKGLDA 106
L+ A ++ + K +DA
Sbjct: 71 RSLQGSARFSQLVEELLKIIDA 92
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Query: 473 QEPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAK 532
++P S+ K S L+ +E +L+ +F + ++ THVI TDA+
Sbjct: 1638 EKPEVISSTRGVNKRISMVASGLTPKEFMLVHKFARKHHISLTNLISEETTHVIMKTDAE 1697
Query: 533 GSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLD--NHGCEEGPKTGRL 590
C RTLK + I G WV+ W+ ++ + E +E+ D N +GPK R
Sbjct: 1698 FVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKILDEHDFEVRGDVVNGRNHQGPKRARE 1757
Query: 591 RALNKAP--KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632
++ K+F GL G F + L+ +V G ++ K
Sbjct: 1758 SQDRESQDRKIFRGLEICCYGPFTNMPTDQLEWMVHLCGASVVK 1801
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
+QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK+ T L+
Sbjct: 18 MQKI---LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKNDITKRSLQ 74
>sp|Q5RJY2|G2E3_MOUSE G2/M phase-specific E3 ubiquitin-protein ligase OS=Mus musculus
GN=G2e3 PE=2 SV=2
Length = 716
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 382 GDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWD-TENFL 440
G +++++ E+ R SKLKC+ C GA++GC V +C+RSYH+PC L+ EC + T+NF
Sbjct: 63 GFLIEDIRKEVQRASKLKCTVCKKNGASIGCVVPTCKRSYHLPCGLQ-KECIFQFTDNFA 121
Query: 441 VLCPVHSSVK 450
C H V+
Sbjct: 122 SFCWKHRPVQ 131
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 474 EPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKG 533
+P S ++ S L+ +E + + +F + ++ THVI TDA+
Sbjct: 1579 KPELTSSEERADRDISMVVSGLTPKEVMTVQKFAEKYRLTLTDAITEETTHVIIKTDAEF 1638
Query: 534 SCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLD-----NHGCEEGPKTG 588
C RTLK + I G W++ W+ ++ + +E+ D NH +GP+
Sbjct: 1639 VCERTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFEVKGDVVTGRNH---QGPR-- 1693
Query: 589 RLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632
R+ KLF GL Y F K++L+ ++ G ++ K
Sbjct: 1694 --RSRESREKLFKGLQVYCCEPFTNMPKDELERMLQLCGASVVK 1735
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 30 VLH-LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTY 85
VLH +QK+ L+CP+CL L P+ CDHIFC C+ + + S+CPLCK++ T
Sbjct: 14 VLHAMQKI---LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITK 70
Query: 86 ADLR 89
L+
Sbjct: 71 RSLQ 74
>sp|Q9D4J7|PHF6_MOUSE PHD finger protein 6 OS=Mus musculus GN=Phf6 PE=1 SV=1
Length = 364
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 35/169 (20%)
Query: 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYA-------- 381
CGFC+S+R E L++ + + H KC+ ++ + +
Sbjct: 17 CGFCKSNRDKECGQLLI-------------SENQKVAAHHKCMLFSSALVSSHSDNESLG 63
Query: 382 GDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCAL-EISECRWDTEN-- 438
G ++++++ E+ RG+KL CS C GA +GC V++C R+YH CAL + ++ R
Sbjct: 64 GFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGI 123
Query: 439 FLVLCPVHSSVKFPIEKSGHRSIRNRAAPLQLTPQEPSFWGSSPNKAKE 487
++V C H +K+ H N A L+ + E SSP K+
Sbjct: 124 YMVYCRKH-------KKTAH----NSEADLEESFNEHELEPSSPKTKKK 161
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAP---------QVYY 380
CGFC LH N K H KC+ ++ + +
Sbjct: 212 CGFCHVGEEENEARGKLHIFNAKKAA-----------AHYKCMLFSSGTVQLTTTSRAEF 260
Query: 381 AGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALE 428
+K + E+ RG ++KC+ C GA +GC +++C ++YH C ++
Sbjct: 261 GDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQ 308
>sp|Q08DR0|PHF6_BOVIN PHD finger protein 6 OS=Bos taurus GN=PHF6 PE=2 SV=1
Length = 365
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 21/106 (19%)
Query: 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVY--------YA 381
CGFC+S+R E L++ + + H KC+ ++ +
Sbjct: 17 CGFCKSNRDKECGQLLI-------------SENQKVAAHHKCMLFSSALVSSHSDNESLG 63
Query: 382 GDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCAL 427
G ++++++ E+ RG+KL CS C GA +GC V++C R+YH CAL
Sbjct: 64 GFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCAL 109
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAP---------QVYY 380
CGFC LH N K H KC+ ++ + +
Sbjct: 212 CGFCHVGEEENQARGKLHIFNAKKAA-----------AHYKCMLFSSGTVQLTTTSRAEF 260
Query: 381 AGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALE 428
+K + E+ RG ++KC+ C GA +GC +++C ++YH C ++
Sbjct: 261 GDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQ 308
>sp|Q5R5Z2|PHF6_PONAB PHD finger protein 6 OS=Pongo abelii GN=PHF6 PE=2 SV=1
Length = 365
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 21/106 (19%)
Query: 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVY--------YA 381
CGFC+S+R E L++ + + H KC+ ++ +
Sbjct: 17 CGFCKSNRDKECGQLLI-------------SENQKVAAHHKCMLFSSALVSSHSDNESLG 63
Query: 382 GDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCAL 427
G ++++++ E+ RG+KL CS C GA +GC V++C R+YH CAL
Sbjct: 64 GFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCAL 109
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAP---------QVYY 380
CGFC LH N K H KC+ ++ + +
Sbjct: 212 CGFCHVGEEENEARGKLHIFNAKKAA-----------AHYKCMLFSSGTVQLTTTSRAEF 260
Query: 381 AGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALE 428
+K + E+ RG ++KC+ C GA +GC +++C ++YH C ++
Sbjct: 261 GDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQ 308
>sp|Q8IWS0|PHF6_HUMAN PHD finger protein 6 OS=Homo sapiens GN=PHF6 PE=1 SV=1
Length = 365
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 21/106 (19%)
Query: 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVY--------YA 381
CGFC+S+R E L++ + + H KC+ ++ +
Sbjct: 17 CGFCKSNRDKECGQLLI-------------SENQKVAAHHKCMLFSSALVSSHSDNESLG 63
Query: 382 GDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCAL 427
G ++++++ E+ RG+KL CS C GA +GC V++C R+YH CAL
Sbjct: 64 GFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCAL 109
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAP---------QVYY 380
CGFC LH N K H KC+ ++ + +
Sbjct: 212 CGFCHVGEEENEARGKLHIFNAKKAA-----------AHYKCMLFSSGTVQLTTTSRAEF 260
Query: 381 AGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALE 428
+K + E+ RG ++KC+ C GA +GC +++C ++YH C ++
Sbjct: 261 GDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQ 308
>sp|Q3UWZ0|TRI75_MOUSE Tripartite motif-containing protein 75 OS=Mus musculus GN=Trim75
PE=2 SV=1
Length = 467
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR---SAQCESECPLCKSQCTYADLR 89
L +L E KCP+CL+ + P+ + C H FC SCI Q S CP+C+ QC + +LR
Sbjct: 7 LARLQKETKCPICLDDLTDPVTVECGHNFCRSCIKDFWAGQQATSSCPVCRHQCQHRNLR 66
Query: 90 PLAFLENII 98
A L N+I
Sbjct: 67 SNAQLGNMI 75
>sp|Q8IYM9|TRI22_HUMAN E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens GN=TRIM22 PE=1
SV=1
Length = 498
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS-------AQCESECPLCKSQCTYADLRPL 91
E+ CP+CL L + PL L C H FC +CI ++ ES CP+C+++ +LRP
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGNLRPN 71
Query: 92 AFLENIIAIYKGLDASPSSNLLQPVYSAFGR 122
L NI+ K + SP + V G+
Sbjct: 72 RHLANIVERVKEVKMSPQEGQKRDVCEHHGK 102
>sp|Q4R9C4|G2E3_MACFA G2/M phase-specific E3 ubiquitin-protein ligase OS=Macaca
fascicularis GN=G2E3 PE=2 SV=2
Length = 706
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 382 GDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWD-TENFL 440
G +++++ E+ R SKLKC C GA++GC C+RSYH PC L+ EC + T NF
Sbjct: 63 GFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-RECIFQFTGNFA 121
Query: 441 VLCPVHSSVKF 451
C H V+
Sbjct: 122 SFCWNHRPVQI 132
>sp|Q7L622|G2E3_HUMAN G2/M phase-specific E3 ubiquitin-protein ligase OS=Homo sapiens
GN=G2E3 PE=1 SV=1
Length = 706
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 382 GDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWD-TENFL 440
G +++++ E+ R SKLKC C GA++GC C+RSYH PC L+ EC + T NF
Sbjct: 63 GFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-RECIFQFTGNFA 121
Query: 441 VLCPVHSSVKF 451
C H V+
Sbjct: 122 SFCWDHRPVQI 132
>sp|Q5I0E2|PHF11_RAT PHD finger protein 11 OS=Rattus norvegicus GN=Phf11 PE=2 SV=1
Length = 336
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 385 VKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALE---ISECRWDTENFLV 441
VK++K E+ RG +LKCS C GA +GC + SCR+SYH CA + I + D + +
Sbjct: 78 VKSVKKEIWRGRRLKCSLCNKGGATVGCDLSSCRKSYHYVCAKKDHAIPQVDEDLGTYKI 137
Query: 442 LCPVH 446
CP H
Sbjct: 138 FCPEH 142
>sp|Q99PQ1|TR12A_MOUSE Tripartite motif-containing protein 12A OS=Mus musculus GN=Trim12a
PE=2 SV=1
Length = 284
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIP---RSAQCESE---CPLCKSQCTYA 86
++ L E+ CP+CLNL +P+ C H FC CI S +C+ + CP+C+ ++
Sbjct: 6 MKNLKEEVTCPVCLNLMVKPVSADCGHTFCQGCITLYFESIKCDKKVFICPVCRISYQFS 65
Query: 87 DLRPLAFLENIIAIYKGLDASPSSNLLQPVYSAFGRH 123
+LRP + NI+ K SP Q V++ RH
Sbjct: 66 NLRPNRNVANIVERLKMFKPSPEEE--QKVFNC-ARH 99
>sp|Q5C8U1|TRIM5_SAGLB Tripartite motif-containing protein 5 OS=Saguinus labiatus GN=TRIM5
PE=2 SV=1
Length = 494
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS------AQCESECPLCKSQCTYADLRPLA 92
E+ CP+CL L + PL L C H FC +CI + Q E CPLC+ +LRP
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKESTPHQGERSCPLCRMSYPSENLRPNR 71
Query: 93 FLENIIAIYKGLDASP 108
L NI+ K + SP
Sbjct: 72 HLANIVERLKEVMLSP 87
>sp|Q1ACD5|TRIM5_SAGOE Tripartite motif-containing protein 5 OS=Saguinus oedipus GN=TRIM5
PE=3 SV=1
Length = 494
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS------AQCESECPLCKSQCTYADLRPLA 92
E+ CP+CL L + PL L C H FC +CI + Q E CPLC+ +LRP
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKESTPHQGERSCPLCRMSYPSENLRPNR 71
Query: 93 FLENIIAIYKGLDASP 108
L NI+ K + SP
Sbjct: 72 HLANIVERLKEVMLSP 87
>sp|Q5D7I5|TRIM5_CALPY Tripartite motif-containing protein 5 OS=Callithrix pygmaea
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS------AQCESECPLCKSQCTYADLRPLA 92
E+ CP+CL L + PL L C H FC +CI + Q E CPLC+ +LRP
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKESTLHQGERSCPLCRMSYPSENLRPNR 71
Query: 93 FLENIIAIYKGLDASP 108
L NI+ K + SP
Sbjct: 72 HLANIVERLKEVMLSP 87
>sp|Q5D7I2|TRIM5_PITPI Tripartite motif-containing protein 5 OS=Pithecia pithecia GN=TRIM5
PE=3 SV=1
Length = 494
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS------AQCESECPLCKSQCTYA 86
L + E+ CP+CL L + PL L C H FC +CI + Q E CPLC+
Sbjct: 6 LMNIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKKSMLHQGERSCPLCRISYPSE 65
Query: 87 DLRPLAFLENIIAIYKGLDASP 108
+LRP L NI+ + + SP
Sbjct: 66 NLRPNRHLANIVERLREVMLSP 87
>sp|P15533|TR30A_MOUSE Tripartite motif-containing protein 30A OS=Mus musculus GN=Trim30a
PE=1 SV=2
Length = 496
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIP------RSAQCESECPLCKSQCTYA 86
L+ + E+ CP+CL L P+ C+H FC +CI R+ + CP+C+ +
Sbjct: 6 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 65
Query: 87 DLRPLAFLENIIAIYKGLDASP 108
+LRP + NI+ KG + P
Sbjct: 66 NLRPNLHVANIVERLKGFKSIP 87
>sp|Q5D7H8|TRIM5_CALDO Tripartite motif-containing protein 5 OS=Callicebus donacophilus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS------AQCESECPLCKSQCTYADLRPLA 92
E+ CP+CL L + PL L C H FC +CI + Q E CPLC+ +LRP
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKESTLHQGERSCPLCRISYPSENLRPNR 71
Query: 93 FLENIIAIYKGLDASP 108
L NI+ + + SP
Sbjct: 72 HLANIVERLREVVLSP 87
>sp|Q7Z5J4|RAI1_HUMAN Retinoic acid-induced protein 1 OS=Homo sapiens GN=RAI1 PE=1 SV=2
Length = 1906
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 367 VHSKCIEWAPQVYYAGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCA 426
VH C W VY + L+ + + CS C GA +GC + C +YH PCA
Sbjct: 1824 VHEACAVWTGGVYLVAGKLFGLQEAMKVAVDMMCSSCQEAGATIGCCHKGCLHTYHYPCA 1883
Query: 427 LEISECRWDTENFLVLCPVH 446
+ C + ENF + CP H
Sbjct: 1884 SDAG-CIFIEENFSLKCPKH 1902
>sp|Q5F4A1|G2E3_CHICK G2/M phase-specific E3 ubiquitin-protein ligase OS=Gallus gallus
GN=G2E3 PE=2 SV=1
Length = 742
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 365 IHVHSKCIEWAPQVYYAGD--------TVKNLKAELARGSKLKCSRCGLKGAALGCYVRS 416
+ +H+ C+ + ++ G+ +++++ E+ R ++L C+ C KGA++GC
Sbjct: 37 LTLHNYCLLMSSGIWQRGEENEGVDGFLIEDIRKEVNRAARLMCNICRKKGASIGCVAPK 96
Query: 417 CRRSYHVPCALEISECRWD-TENFLVLCPVHSSVKF 451
C+RSYH PC L+ EC + E+F C H V+
Sbjct: 97 CKRSYHFPCGLQ-KECVFQFMEDFRSYCWEHKPVQI 131
>sp|Q61818|RAI1_MOUSE Retinoic acid-induced protein 1 OS=Mus musculus GN=Rai1 PE=1 SV=3
Length = 1889
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 367 VHSKCIEWAPQVYYAGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCA 426
VH C W VY + L+ + + C+ C GA + C + C +YH PCA
Sbjct: 1806 VHEACAVWTSGVYLVAGKLFGLQEAMKVAVDMPCTSCHEPGATISCSYKGCIHTYHYPCA 1865
Query: 427 LEISECRWDTENFLVLCPVHSSVKF 451
+ C + ENF + CP H +
Sbjct: 1866 NDTG-CTFIEENFTLKCPKHKRLPL 1889
>sp|Q3ZEE5|TRIM5_HYLLA Tripartite motif-containing protein 5 OS=Hylobates lar GN=TRIM5
PE=3 SV=1
Length = 493
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-----ESECPLCKSQCTYADLRPLAF 93
E+ CP+CL L ++PL L C H FC +C+ + + E CP+C+ + ++RP
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDGERSCPVCRISYQHKNIRPNRH 71
Query: 94 LENIIAIYKGLDASP 108
+ NI+ + + SP
Sbjct: 72 VANIVEKLREVKLSP 86
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 18 SAANSKRSFNPLVLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECP 77
SAA+ K+S P LQ+L L+C +C + P+L PC H FC+ CI E +CP
Sbjct: 6 SAADFKKSKVP---QLQELDDLLRCHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCP 62
Query: 78 LCKSQCTYADLRPLAFLENIIAIYKG 103
LC + + LR + I YK
Sbjct: 63 LCLHELRESMLRSEYLVNEITETYKA 88
>sp|Q5D7J2|TRIM5_PAPAN Tripartite motif-containing protein 5 OS=Papio anubis GN=TRIM5 PE=3
SV=1
Length = 497
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS-------AQCESECPLCKSQCTYADLRPL 91
E+ CP+CL L + PL LPC H FC +CI + + E CP+C+ +++P
Sbjct: 12 EVTCPICLELLTEPLSLPCGHSFCQACITANHRKSMLYKEGERSCPVCRISYQPENIQPN 71
Query: 92 AFLENIIAIYKGLDASPSSNL 112
+ NI+ + + SP L
Sbjct: 72 RHVANIVEKLREVKLSPEEGL 92
>sp|Q2HJ93|PHF11_BOVIN PHD finger protein 11 OS=Bos taurus GN=PHF11 PE=2 SV=1
Length = 337
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 370 KCIEWAPQVYYAGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCA 426
+C ++ P V+++K E+ RG KLKC+ CG KGA +GC ++SC ++YH CA
Sbjct: 80 ECEDYDPSNNDRNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCFKNYHFFCA 136
>sp|Q5D7I1|TRIM5_ATEGE Tripartite motif-containing protein 5 OS=Ateles geoffroyi GN=TRIM5
PE=2 SV=1
Length = 547
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS------AQCESECPLCKSQCTYADLRPLA 92
E+ CP+CL L + PL L C H FC +CI + Q E CPLC+ +LRP
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITANHKESTLHQGERSCPLCRVSYQSENLRPNR 71
Query: 93 FLENIIAIYKGLDASP 108
L NI + + SP
Sbjct: 72 HLANIAERLREVMLSP 87
>sp|Q5D7H7|TRIM5_LAGLA Tripartite motif-containing protein 5 OS=Lagothrix lagotricha
GN=TRIM5 PE=3 SV=1
Length = 547
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS------AQCESECPLCKSQCTYADLRPLA 92
E+ CP+CL+L + PL L C H FC +CI Q E CPLC+ +LRP
Sbjct: 12 EVTCPICLDLLTEPLSLDCGHSFCQACITADHKESTLHQGERSCPLCRVGYQSENLRPNR 71
Query: 93 FLENIIAIYKGLDASP 108
L NI + + SP
Sbjct: 72 HLANIAERLREVMLSP 87
>sp|Q5I0J8|PH11L_RAT PHD finger protein 11-like OS=Rattus norvegicus GN=Phf11l PE=2 SV=1
Length = 293
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 384 TVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALE---ISECRWDTENFL 440
VK++K E+ RG +LKCS C KGA +GC ++SC ++YH+ CA E I + D +
Sbjct: 77 AVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYK 136
Query: 441 VLCPVHS 447
+ C H+
Sbjct: 137 LFCQRHA 143
>sp|Q80X56|TRI69_MOUSE E3 ubiquitin-protein ligase TRIM69 OS=Mus musculus GN=Trim69 PE=1
SV=1
Length = 500
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESE---CPLCKSQCTYADLR 89
+Q L EL CPLC + F PL+L C H FC CI + S+ CP CK C Y++
Sbjct: 33 IQDLTTELHCPLCNDWFRDPLMLTCGHNFCQDCIQSFWKVHSKETFCPDCKMLCQYSNCT 92
Query: 90 PLAFLENIIAIYKGL 104
LE ++ K L
Sbjct: 93 FNLVLEKLVEKIKKL 107
>sp|Q86WT6|TRI69_HUMAN E3 ubiquitin-protein ligase TRIM69 OS=Homo sapiens GN=TRIM69 PE=1
SV=2
Length = 500
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIP---RSAQCESECPLCKSQCTYADLR 89
+Q + +EL CPLC + F PL+L C H FC +CI R E+ CP CK C Y +
Sbjct: 32 IQDITMELHCPLCNDWFRDPLMLSCGHNFCEACIQDFWRLQAKETFCPECKMLCQYNNCT 91
Query: 90 PLAFLENIIAIYKGL 104
L+ ++ K L
Sbjct: 92 FNPVLDKLVEKIKKL 106
>sp|Q2YEM8|TRIM5_HOOHO Tripartite motif-containing protein 5 OS=Hoolock hoolock GN=TRIM5
PE=3 SV=1
Length = 494
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC------ESECPLCKSQCTYADLRPLA 92
E+ CP+CL L ++PL L C H FC +C+ + + E CP+C+ + ++RP
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQHKNIRPNR 71
Query: 93 FLENIIAIYKGLDASP 108
+ NI+ + + SP
Sbjct: 72 HVANIVEKLREVKLSP 87
>sp|Q8BVM9|PHF11_MOUSE PHD finger protein 11 OS=Mus musculus GN=Phf11 PE=2 SV=1
Length = 293
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 385 VKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALE---ISECRWDTENFLV 441
VK++K E+ RG +LKCS C KGA +G ++SC ++YH+ CA+E I + D + +
Sbjct: 78 VKSVKKEIGRGRRLKCSFCKNKGATMGYDLQSCTKNYHLSCAMEDHAILQVDEDHGTYKL 137
Query: 442 LCPVHS 447
C H+
Sbjct: 138 FCQKHA 143
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCES---ECPLCKSQCTYADLR 89
+ KL E+ CP+CL++ +P+ + C H FC CI + + +CPLCK+ +R
Sbjct: 7 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 66
Query: 90 PLAFLENIIAIYKGLDAS 107
+ L N++ + L AS
Sbjct: 67 FNSLLRNLVEKIQALQAS 84
>sp|Q5C8U3|TRIM5_CERTA Tripartite motif-containing protein 5 OS=Cercopithecus tantalus
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS-------AQCESECPLCKSQCTYADLRPL 91
E+ CP+CL L + PL LPC H FC +CI + + E CP+C+ +++P
Sbjct: 12 EVTCPICLELLTEPLSLPCGHSFCQACITANHKESMLYKEEERSCPVCRISYQPENIQPN 71
Query: 92 AFLENIIAIYKGLDASP 108
+ NI+ + + SP
Sbjct: 72 RHVANIVEKLREVKLSP 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,774,685
Number of Sequences: 539616
Number of extensions: 10964919
Number of successful extensions: 25800
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 392
Number of HSP's that attempted gapping in prelim test: 24743
Number of HSP's gapped (non-prelim): 1252
length of query: 691
length of database: 191,569,459
effective HSP length: 124
effective length of query: 567
effective length of database: 124,657,075
effective search space: 70680561525
effective search space used: 70680561525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)