Query 038256
Match_columns 691
No_of_seqs 558 out of 2708
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4362 Transcriptional regula 100.0 2E-44 4.4E-49 403.2 22.0 349 326-691 286-666 (684)
2 PF13771 zf-HC5HC2H: PHD-like 99.8 1E-19 2.2E-24 159.6 3.8 79 368-447 1-90 (90)
3 PF13832 zf-HC5HC2H_2: PHD-zin 99.7 6.4E-18 1.4E-22 153.9 3.7 99 329-446 2-110 (110)
4 KOG0954 PHD finger protein [Ge 99.7 8.6E-18 1.9E-22 187.0 2.1 130 308-450 293-440 (893)
5 COG5141 PHD zinc finger-contai 99.6 2E-16 4.3E-21 169.2 0.1 140 308-453 215-369 (669)
6 KOG0955 PHD finger protein BR1 99.5 2.2E-14 4.7E-19 170.1 4.4 135 309-449 242-396 (1051)
7 KOG0956 PHD finger protein AF1 99.5 2.7E-14 5.8E-19 158.2 3.9 142 301-448 21-182 (900)
8 KOG2043 Signaling protein SWIF 99.4 9.5E-13 2.1E-17 155.7 9.0 142 488-638 660-801 (896)
9 PF00533 BRCT: BRCA1 C Terminu 99.2 1.1E-10 2.3E-15 98.4 8.4 74 484-561 5-78 (78)
10 KOG2177 Predicted E3 ubiquitin 99.2 2.1E-11 4.6E-16 127.3 4.6 108 31-140 5-124 (386)
11 PF12738 PTCB-BRCT: twin BRCT 99.1 5.2E-11 1.1E-15 97.3 4.1 63 488-556 1-63 (63)
12 TIGR00599 rad18 DNA repair pro 99.1 3.9E-11 8.5E-16 130.8 3.6 86 21-106 8-93 (397)
13 PF15227 zf-C3HC4_4: zinc fing 99.1 3.4E-11 7.4E-16 90.6 0.5 38 42-79 1-42 (42)
14 KOG0957 PHD finger protein [Ge 99.0 2.7E-11 5.8E-16 130.6 -1.1 134 308-450 149-302 (707)
15 PF14835 zf-RING_6: zf-RING of 99.0 3E-10 6.5E-15 91.5 3.6 64 33-98 1-65 (65)
16 smart00504 Ubox Modified RING 99.0 2.8E-10 6E-15 92.8 2.6 62 39-100 1-62 (63)
17 KOG0287 Postreplication repair 98.9 1.7E-10 3.7E-15 119.6 0.3 77 30-106 14-90 (442)
18 cd00027 BRCT Breast Cancer Sup 98.9 2.4E-09 5.1E-14 87.2 6.6 70 488-562 2-72 (72)
19 smart00292 BRCT breast cancer 98.9 3.9E-09 8.5E-14 87.9 7.3 75 486-564 4-80 (80)
20 PF04564 U-box: U-box domain; 98.8 2E-09 4.4E-14 90.9 2.6 67 38-104 3-70 (73)
21 KOG3226 DNA repair protein [Re 98.7 1.2E-08 2.5E-13 107.4 6.1 86 485-576 318-403 (508)
22 PLN03208 E3 ubiquitin-protein 98.7 6E-09 1.3E-13 102.6 1.4 57 34-90 13-85 (193)
23 COG5432 RAD18 RING-finger-cont 98.6 1.1E-08 2.4E-13 104.3 2.0 77 30-106 16-92 (391)
24 PF13923 zf-C3HC4_2: Zinc fing 98.6 1.1E-08 2.5E-13 75.6 -0.2 38 42-79 1-39 (39)
25 PF13920 zf-C3HC4_3: Zinc fing 98.4 4.1E-08 8.9E-13 76.6 0.3 47 38-84 1-48 (50)
26 KOG1084 Transcription factor T 98.4 6.5E-08 1.4E-12 105.9 1.1 85 362-447 236-321 (375)
27 PF00097 zf-C3HC4: Zinc finger 98.4 6.8E-08 1.5E-12 72.0 -0.1 38 42-79 1-41 (41)
28 KOG0320 Predicted E3 ubiquitin 98.3 8.9E-08 1.9E-12 92.1 -0.4 54 37-90 129-184 (187)
29 PF13639 zf-RING_2: Ring finge 98.3 6E-08 1.3E-12 73.6 -1.8 40 41-80 2-44 (44)
30 PF13445 zf-RING_UBOX: RING-ty 98.3 9.8E-08 2.1E-12 72.0 -0.8 35 42-77 1-43 (43)
31 PHA02929 N1R/p28-like protein; 98.3 2.9E-07 6.4E-12 94.4 2.0 48 37-84 172-227 (238)
32 KOG1929 Nucleotide excision re 98.2 4.1E-06 9E-11 98.6 10.3 133 481-637 6-140 (811)
33 KOG0823 Predicted E3 ubiquitin 98.2 3.6E-07 7.8E-12 91.7 1.0 52 37-88 45-99 (230)
34 KOG0317 Predicted E3 ubiquitin 98.2 3.9E-07 8.4E-12 94.0 1.0 53 36-88 236-288 (293)
35 PF14634 zf-RING_5: zinc-RING 98.2 7.9E-07 1.7E-11 67.5 1.6 41 41-81 1-44 (44)
36 cd00162 RING RING-finger (Real 98.1 8.3E-07 1.8E-11 66.2 0.9 42 41-82 1-44 (45)
37 KOG4367 Predicted Zn-finger pr 98.0 1.3E-06 2.9E-11 93.5 0.8 34 36-69 1-34 (699)
38 smart00184 RING Ring finger. E 97.9 2.4E-06 5.3E-11 61.4 0.7 38 42-79 1-39 (39)
39 KOG1929 Nucleotide excision re 97.9 3.6E-05 7.8E-10 90.9 9.6 146 482-633 101-272 (811)
40 PHA02926 zinc finger-like prot 97.9 3.9E-06 8.4E-11 83.8 0.8 52 33-84 164-230 (242)
41 KOG2164 Predicted E3 ubiquitin 97.8 6E-06 1.3E-10 91.2 0.7 54 39-92 186-244 (513)
42 COG5574 PEX10 RING-finger-cont 97.7 9E-06 1.9E-10 83.1 0.3 52 37-88 213-266 (271)
43 KOG3548 DNA damage checkpoint 97.6 0.00012 2.7E-09 85.3 8.0 148 485-634 926-1104(1176)
44 KOG0311 Predicted E3 ubiquitin 97.6 5.3E-06 1.2E-10 87.7 -2.8 69 32-100 36-107 (381)
45 PLN03123 poly [ADP-ribose] pol 97.6 0.00013 2.7E-09 88.7 8.0 91 482-575 391-481 (981)
46 TIGR00570 cdk7 CDK-activating 97.6 3.1E-05 6.7E-10 81.9 2.3 51 39-89 3-59 (309)
47 KOG3524 Predicted guanine nucl 97.6 0.00012 2.5E-09 83.4 6.7 127 482-632 116-242 (850)
48 KOG2660 Locus-specific chromos 97.6 1.5E-05 3.2E-10 83.9 -0.5 69 33-101 9-82 (331)
49 PF12678 zf-rbx1: RING-H2 zinc 97.4 5E-05 1.1E-09 64.2 0.8 40 41-80 21-73 (73)
50 PLN03122 Poly [ADP-ribose] pol 97.4 0.00034 7.4E-09 83.3 7.5 88 484-575 189-278 (815)
51 KOG4159 Predicted E3 ubiquitin 97.3 7.5E-05 1.6E-09 82.2 0.8 51 35-85 80-130 (398)
52 KOG0978 E3 ubiquitin ligase in 97.3 5E-05 1.1E-09 87.9 -0.7 61 30-90 634-695 (698)
53 COG5152 Uncharacterized conser 97.0 0.00021 4.6E-09 69.9 0.4 47 39-85 196-242 (259)
54 KOG1813 Predicted E3 ubiquitin 96.9 0.00054 1.2E-08 71.3 2.5 45 40-84 242-286 (313)
55 KOG0966 ATP-dependent DNA liga 96.9 0.0062 1.3E-07 70.9 11.1 85 486-574 636-721 (881)
56 KOG0297 TNF receptor-associate 96.8 0.00099 2.2E-08 74.0 3.9 54 34-87 16-70 (391)
57 KOG0824 Predicted E3 ubiquitin 96.7 0.00083 1.8E-08 70.1 2.4 46 41-86 9-55 (324)
58 PF11789 zf-Nse: Zinc-finger o 96.6 0.00049 1.1E-08 55.3 0.1 42 37-78 9-53 (57)
59 KOG0802 E3 ubiquitin ligase [P 96.5 0.00054 1.2E-08 79.3 -1.0 47 37-83 289-340 (543)
60 COG5222 Uncharacterized conser 96.4 0.0017 3.6E-08 67.3 2.3 64 40-103 275-341 (427)
61 KOG4185 Predicted E3 ubiquitin 96.4 0.0024 5.2E-08 68.2 3.4 100 39-138 3-133 (296)
62 KOG4628 Predicted E3 ubiquitin 96.4 0.0017 3.6E-08 70.1 2.2 45 40-84 230-278 (348)
63 smart00292 BRCT breast cancer 96.3 0.011 2.3E-07 48.6 6.4 37 598-634 1-37 (80)
64 KOG2879 Predicted E3 ubiquitin 96.3 0.0021 4.5E-08 66.3 2.0 50 35-84 235-287 (298)
65 PF00533 BRCT: BRCA1 C Terminu 96.0 0.02 4.4E-07 47.6 6.4 37 597-634 3-39 (78)
66 COG5243 HRD1 HRD ubiquitin lig 95.8 0.0028 6.1E-08 67.7 0.3 47 37-83 285-344 (491)
67 COG5540 RING-finger-containing 95.5 0.0046 9.9E-08 64.6 0.8 48 38-85 322-373 (374)
68 PF12861 zf-Apc11: Anaphase-pr 95.3 0.0073 1.6E-07 52.3 1.1 48 38-85 20-83 (85)
69 KOG4172 Predicted E3 ubiquitin 95.2 0.0017 3.7E-08 50.8 -2.6 44 40-83 8-53 (62)
70 KOG0323 TFIIF-interacting CTD 94.9 0.012 2.7E-07 68.2 1.9 86 486-577 443-533 (635)
71 KOG0804 Cytoplasmic Zn-finger 94.7 0.011 2.4E-07 64.8 0.9 49 34-84 170-222 (493)
72 PRK06195 DNA polymerase III su 94.7 0.14 3E-06 55.2 9.2 73 482-555 220-300 (309)
73 KOG1002 Nucleotide excision re 94.6 0.0068 1.5E-07 67.3 -1.2 51 35-85 532-587 (791)
74 PRK14350 ligA NAD-dependent DN 94.5 0.088 1.9E-06 62.3 7.8 71 482-559 593-663 (669)
75 KOG1039 Predicted E3 ubiquitin 94.2 0.02 4.2E-07 62.2 1.3 48 38-85 160-222 (344)
76 cd00027 BRCT Breast Cancer Sup 94.1 0.13 2.9E-06 40.9 5.7 34 602-635 1-34 (72)
77 PRK06063 DNA polymerase III su 93.8 0.25 5.4E-06 53.5 8.9 72 484-561 234-305 (313)
78 KOG1734 Predicted RING-contain 93.7 0.0085 1.8E-07 61.7 -2.4 57 35-91 220-288 (328)
79 PRK14351 ligA NAD-dependent DN 92.9 0.24 5.3E-06 58.9 7.6 75 483-563 610-684 (689)
80 PRK06195 DNA polymerase III su 92.6 0.84 1.8E-05 49.2 10.6 134 535-684 150-289 (309)
81 KOG1645 RING-finger-containing 92.6 0.046 1E-06 59.5 0.9 58 38-95 3-67 (463)
82 TIGR00575 dnlj DNA ligase, NAD 92.5 0.2 4.3E-06 59.4 6.2 67 483-556 585-651 (652)
83 KOG4692 Predicted E3 ubiquitin 92.4 0.037 8E-07 59.0 -0.0 48 37-84 420-467 (489)
84 PRK07956 ligA NAD-dependent DN 92.4 0.3 6.5E-06 58.0 7.5 73 484-563 592-664 (665)
85 PF14447 Prok-RING_4: Prokaryo 92.3 0.11 2.3E-06 41.3 2.4 48 37-86 5-52 (55)
86 smart00249 PHD PHD zinc finger 92.1 0.14 3.1E-06 38.0 2.9 44 399-446 1-47 (47)
87 KOG4265 Predicted E3 ubiquitin 91.5 0.062 1.3E-06 57.8 0.4 48 37-84 288-336 (349)
88 KOG1785 Tyrosine kinase negati 91.5 0.056 1.2E-06 58.5 0.1 46 41-86 371-418 (563)
89 KOG4275 Predicted E3 ubiquitin 91.1 0.045 9.8E-07 57.1 -1.1 44 36-83 297-341 (350)
90 KOG3039 Uncharacterized conser 91.0 0.1 2.2E-06 53.3 1.3 52 38-89 220-275 (303)
91 KOG3800 Predicted E3 ubiquitin 90.9 0.11 2.3E-06 54.5 1.5 50 41-90 2-57 (300)
92 KOG2481 Protein required for n 90.8 0.37 7.9E-06 54.2 5.5 77 486-574 329-415 (570)
93 KOG0825 PHD Zn-finger protein 90.3 0.046 1E-06 63.5 -2.0 47 39-85 123-172 (1134)
94 COG0272 Lig NAD-dependent DNA 90.3 0.62 1.3E-05 54.5 7.0 72 481-559 593-664 (667)
95 KOG3161 Predicted E3 ubiquitin 89.5 0.1 2.2E-06 59.6 -0.1 41 35-77 7-51 (861)
96 COG5163 NOP7 Protein required 89.3 0.53 1.2E-05 51.3 5.1 77 486-574 352-439 (591)
97 PRK06063 DNA polymerase III su 88.1 0.83 1.8E-05 49.5 5.7 49 597-658 230-278 (313)
98 KOG3002 Zn finger protein [Gen 87.9 0.39 8.4E-06 51.5 2.9 62 36-103 45-107 (299)
99 PF11793 FANCL_C: FANCL C-term 87.8 0.12 2.7E-06 43.2 -0.7 46 39-84 2-66 (70)
100 KOG1001 Helicase-like transcri 87.3 0.21 4.6E-06 59.2 0.6 51 34-85 449-501 (674)
101 PF07800 DUF1644: Protein of u 87.1 0.25 5.4E-06 47.6 0.9 21 38-58 1-21 (162)
102 PF14570 zf-RING_4: RING/Ubox 86.1 0.29 6.3E-06 37.9 0.6 42 42-83 1-47 (48)
103 KOG0828 Predicted E3 ubiquitin 85.7 0.21 4.6E-06 55.6 -0.5 49 36-84 568-634 (636)
104 PRK14350 ligA NAD-dependent DN 85.0 1.1 2.3E-05 53.4 4.9 47 598-656 592-638 (669)
105 KOG4739 Uncharacterized protei 84.8 0.45 9.8E-06 48.9 1.5 45 40-86 4-50 (233)
106 KOG1084 Transcription factor T 83.5 0.23 5E-06 54.9 -1.4 91 360-451 142-253 (375)
107 KOG2817 Predicted E3 ubiquitin 83.4 0.37 8.1E-06 52.7 0.2 51 35-85 330-386 (394)
108 KOG1571 Predicted E3 ubiquitin 83.3 0.5 1.1E-05 51.1 1.0 48 34-84 300-347 (355)
109 PF04641 Rtf2: Rtf2 RING-finge 82.8 0.58 1.3E-05 49.2 1.4 52 36-88 110-165 (260)
110 KOG3524 Predicted guanine nucl 82.6 0.67 1.4E-05 53.9 1.8 83 485-574 211-293 (850)
111 PF05290 Baculo_IE-1: Baculovi 82.3 0.39 8.5E-06 44.9 -0.2 49 38-86 79-134 (140)
112 COG0272 Lig NAD-dependent DNA 81.7 1.9 4.2E-05 50.6 5.1 55 598-664 593-647 (667)
113 KOG0827 Predicted E3 ubiquitin 80.8 0.53 1.2E-05 51.2 0.2 48 41-88 6-60 (465)
114 KOG0826 Predicted E3 ubiquitin 80.6 0.47 1E-05 50.6 -0.3 47 38-84 299-346 (357)
115 COG5194 APC11 Component of SCF 80.5 0.63 1.4E-05 39.7 0.5 30 56-85 53-82 (88)
116 cd00021 BBOX B-Box-type zinc f 79.6 0.89 1.9E-05 32.8 1.0 28 112-140 10-38 (39)
117 KOG1814 Predicted E3 ubiquitin 78.6 0.99 2.2E-05 49.6 1.4 45 37-81 182-237 (445)
118 smart00744 RINGv The RING-vari 78.6 0.86 1.9E-05 35.5 0.7 40 41-80 1-49 (49)
119 COG5236 Uncharacterized conser 78.3 0.69 1.5E-05 49.5 0.1 51 34-84 56-108 (493)
120 TIGR00575 dnlj DNA ligase, NAD 77.6 3.7 7.9E-05 49.0 5.8 46 599-656 584-629 (652)
121 PRK14351 ligA NAD-dependent DN 76.8 4.2 9.1E-05 48.7 6.0 48 598-657 608-655 (689)
122 PRK07956 ligA NAD-dependent DN 74.9 5.2 0.00011 47.8 6.1 47 599-657 590-636 (665)
123 KOG1940 Zn-finger protein [Gen 74.4 1.3 2.9E-05 46.7 0.9 43 39-81 158-204 (276)
124 PF00628 PHD: PHD-finger; Int 74.3 2.6 5.6E-05 32.5 2.3 29 399-429 1-32 (51)
125 PF12738 PTCB-BRCT: twin BRCT 74.0 4.5 9.8E-05 32.5 3.8 31 603-634 1-31 (63)
126 COG5219 Uncharacterized conser 73.5 0.71 1.5E-05 55.2 -1.4 49 36-84 1466-1523(1525)
127 KOG0966 ATP-dependent DNA liga 71.0 7.9 0.00017 46.2 6.2 72 499-572 801-880 (881)
128 PF00643 zf-B_box: B-box zinc 70.2 1.8 3.9E-05 32.0 0.6 27 113-140 14-41 (42)
129 COG5163 NOP7 Protein required 70.0 3 6.5E-05 45.7 2.4 35 597-634 348-382 (591)
130 COG5175 MOT2 Transcriptional r 70.0 1.4 3.1E-05 47.1 -0.0 51 37-88 13-68 (480)
131 PF03854 zf-P11: P-11 zinc fin 69.2 1 2.2E-05 34.7 -1.0 36 50-85 11-47 (50)
132 KOG2481 Protein required for n 68.6 3.5 7.6E-05 46.7 2.6 36 596-634 324-359 (570)
133 PF10367 Vps39_2: Vacuolar sor 67.9 3 6.6E-05 37.0 1.6 34 35-68 74-109 (109)
134 PF02891 zf-MIZ: MIZ/SP-RING z 66.1 2.6 5.6E-05 33.0 0.7 43 39-82 2-50 (50)
135 KOG1080 Histone H3 (Lys4) meth 66.0 2.5 5.3E-05 52.2 0.8 67 361-433 643-713 (1005)
136 COG5275 BRCT domain type II [G 65.9 24 0.00052 36.0 7.5 50 482-531 154-204 (276)
137 smart00336 BBOX B-Box-type zin 65.8 3.3 7.2E-05 30.3 1.2 27 112-139 13-40 (42)
138 PLN03122 Poly [ADP-ribose] pol 65.7 11 0.00023 46.0 6.1 37 597-634 187-223 (815)
139 COG5220 TFB3 Cdk activating ki 65.3 0.9 2E-05 46.4 -2.5 47 39-85 10-65 (314)
140 KOG2114 Vacuolar assembly/sort 63.4 3.3 7.1E-05 49.5 1.1 40 40-82 841-881 (933)
141 KOG3039 Uncharacterized conser 62.1 2.4 5.2E-05 43.6 -0.2 36 34-69 38-73 (303)
142 KOG1973 Chromatin remodeling p 61.9 4.1 9E-05 43.3 1.5 40 403-447 226-266 (274)
143 COG5109 Uncharacterized conser 58.5 2.9 6.2E-05 44.5 -0.4 50 35-84 332-387 (396)
144 PF14446 Prok-RING_1: Prokaryo 58.4 5.1 0.00011 31.9 1.1 36 397-434 5-44 (54)
145 KOG2932 E3 ubiquitin ligase in 55.5 4.5 9.8E-05 43.0 0.5 42 40-83 91-133 (389)
146 PF07191 zinc-ribbons_6: zinc- 55.3 2.4 5.1E-05 35.6 -1.3 41 39-84 1-41 (70)
147 KOG2930 SCF ubiquitin ligase, 55.3 2.9 6.3E-05 37.5 -0.8 28 56-83 80-107 (114)
148 KOG3970 Predicted E3 ubiquitin 54.1 11 0.00025 38.3 3.0 53 33-85 44-106 (299)
149 KOG0298 DEAD box-containing he 54.0 2.4 5.2E-05 52.7 -2.0 52 32-83 1146-1198(1394)
150 KOG1812 Predicted E3 ubiquitin 53.9 5 0.00011 44.7 0.6 46 39-84 146-203 (384)
151 KOG1941 Acetylcholine receptor 53.6 2.1 4.6E-05 46.7 -2.3 45 37-81 363-413 (518)
152 KOG4299 PHD Zn-finger protein 51.3 4.8 0.0001 46.6 -0.1 53 398-453 254-309 (613)
153 KOG2093 Translesion DNA polyme 50.2 30 0.00065 42.0 6.0 117 485-611 48-173 (1016)
154 PF10367 Vps39_2: Vacuolar sor 50.2 9.1 0.0002 33.9 1.5 31 397-428 78-109 (109)
155 KOG1100 Predicted E3 ubiquitin 49.1 11 0.00023 38.5 2.0 39 42-84 161-200 (207)
156 PRK05601 DNA polymerase III su 49.0 50 0.0011 36.7 7.2 86 473-562 283-368 (377)
157 COG5194 APC11 Component of SCF 47.5 6.7 0.00014 33.6 0.2 45 398-442 21-83 (88)
158 KOG1493 Anaphase-promoting com 47.2 3.9 8.5E-05 34.7 -1.2 44 41-84 22-81 (84)
159 COG0289 DapB Dihydrodipicolina 44.8 25 0.00054 37.1 3.9 38 482-519 90-127 (266)
160 PF10272 Tmpp129: Putative tra 43.5 8.9 0.00019 42.2 0.4 30 59-88 313-355 (358)
161 PHA03096 p28-like protein; Pro 40.1 7.6 0.00017 41.5 -0.7 42 40-81 179-231 (284)
162 PF01113 DapB_N: Dihydrodipico 38.1 23 0.00049 32.8 2.2 34 485-518 91-124 (124)
163 COG5067 DBF4 Protein kinase es 37.6 24 0.00053 38.9 2.6 47 483-529 121-167 (468)
164 TIGR02742 TrbC_Ftype type-F co 36.4 1.5E+02 0.0033 28.0 7.4 60 488-558 2-65 (130)
165 COG5034 TNG2 Chromatin remodel 35.7 17 0.00037 37.9 1.0 46 394-445 218-266 (271)
166 PF08746 zf-RING-like: RING-li 33.3 16 0.00034 27.7 0.2 30 400-429 1-31 (43)
167 COG5275 BRCT domain type II [G 32.5 69 0.0015 32.8 4.6 38 597-634 154-191 (276)
168 PF03107 C1_2: C1 domain; Int 30.8 41 0.00088 23.2 2.0 26 399-426 2-30 (30)
169 KOG0956 PHD finger protein AF1 29.9 70 0.0015 37.9 4.7 87 330-434 8-97 (900)
170 KOG3899 Uncharacterized conser 28.7 13 0.00029 39.3 -1.1 32 57-88 325-369 (381)
171 PF08746 zf-RING-like: RING-li 28.5 28 0.0006 26.3 0.9 38 42-79 1-43 (43)
172 PF05605 zf-Di19: Drought indu 28.4 20 0.00043 28.2 0.1 37 38-81 1-39 (54)
173 PF11793 FANCL_C: FANCL C-term 26.8 35 0.00076 28.5 1.3 32 397-428 2-39 (70)
174 KOG4445 Uncharacterized conser 26.8 7.8 0.00017 41.1 -3.1 47 39-85 115-187 (368)
175 KOG3579 Predicted E3 ubiquitin 24.7 26 0.00056 37.1 0.1 41 38-78 267-316 (352)
176 KOG1815 Predicted E3 ubiquitin 24.5 23 0.00049 40.3 -0.3 35 37-71 68-103 (444)
177 KOG0954 PHD finger protein [Ge 24.4 49 0.0011 39.5 2.3 86 326-433 270-358 (893)
178 PF13240 zinc_ribbon_2: zinc-r 24.3 44 0.00095 21.8 1.1 22 61-82 1-22 (23)
179 KOG1428 Inhibitor of type V ad 24.0 31 0.00068 43.9 0.7 46 40-85 3487-3545(3738)
180 KOG4362 Transcriptional regula 23.8 56 0.0012 38.9 2.6 106 516-636 22-128 (684)
181 KOG1244 Predicted transcriptio 23.7 48 0.001 35.0 1.8 51 367-429 256-314 (336)
182 KOG2169 Zn-finger transcriptio 23.6 50 0.0011 39.5 2.3 69 35-103 302-375 (636)
183 KOG3268 Predicted E3 ubiquitin 22.6 28 0.00061 34.3 -0.0 31 55-85 188-229 (234)
184 PHA02825 LAP/PHD finger-like p 22.5 60 0.0013 31.7 2.1 56 321-406 2-57 (162)
185 PF04216 FdhE: Protein involve 22.3 32 0.00069 36.8 0.3 44 39-82 172-220 (290)
186 KOG1812 Predicted E3 ubiquitin 22.0 47 0.001 37.1 1.6 42 37-78 304-350 (384)
187 PF14353 CpXC: CpXC protein 21.2 31 0.00067 32.0 -0.1 12 73-84 38-49 (128)
188 PF11149 DUF2924: Protein of u 21.1 1.2E+02 0.0026 29.0 3.8 56 493-549 50-122 (136)
189 PF09673 TrbC_Ftype: Type-F co 21.0 4.2E+02 0.0091 24.1 7.4 60 488-558 1-65 (113)
190 PF07649 C1_3: C1-like domain; 21.0 38 0.00083 23.2 0.4 26 399-426 2-30 (30)
191 COG3813 Uncharacterized protei 20.6 57 0.0012 27.5 1.4 53 41-95 7-63 (84)
192 KOG2068 MOT2 transcription fac 20.2 73 0.0016 34.6 2.4 46 40-85 250-299 (327)
193 PLN03123 poly [ADP-ribose] pol 20.2 1.2E+02 0.0025 38.2 4.5 37 597-634 391-427 (981)
No 1
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=100.00 E-value=2e-44 Score=403.20 Aligned_cols=349 Identities=38% Similarity=0.566 Sum_probs=298.4
Q ss_pred CcccccccccCcCCcccce-------eeeecCCCccccccccCCCCeEEEccccccCCCcEEcCCcccCHHHHHHhcccc
Q 038256 326 NNYICGFCQSSRISEVTGL-------MLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGDTVKNLKAELARGSKL 398 (691)
Q Consensus 326 ~~~~C~lC~~~~~~~~~G~-------l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~~l~~l~~~~~r~~~l 398 (691)
..-.|.+|.+.......+. ++.+..|....|+.....+..-+|+.|.+|.++|+.....+.. ..++.|+...
T Consensus 286 ~~~~~~~~~s~~~~~~~pe~~~k~~~~~~~sa~~~~s~Dk~~~~~~~~~~v~~~~d~~~v~d~cs~~~~-~~~l~r~~~~ 364 (684)
T KOG4362|consen 286 LASSPAQLSSRSPSKKTPESITKTVDKFEVSAGLISSGDKTDNGNVRKPSVAVSDDDEQVLDECSTSGK-ECELGRSFPI 364 (684)
T ss_pred ccchhhhhhcccccccCCccccccccceeecccccCCCccCCCccccccccccccchHHHHHhcccccc-ccccccCCcc
Confidence 3345666666544443444 7778888888888888999999999999999999876443322 1577889999
Q ss_pred ccCcCCCCCceeccCccCcccceecccccccCccccc---------------cCC---ceEeccccCCCCCCCCcccccc
Q 038256 399 KCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWD---------------TEN---FLVLCPVHSSVKFPIEKSGHRS 460 (691)
Q Consensus 399 ~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~---------------~~~---~~~~C~~H~~~~~~~e~~~~~~ 460 (691)
.|..|+..||..+|..++|...||++||+....|.|+ ..+ |.+.|+.|+..++|.++.....
T Consensus 365 ~~~~c~l~~~h~~~~~~s~~~~~~~~~a~~~~~~~~~~~t~~i~~~~~~~~r~~~~~~f~~~cp~~ss~kep~~K~~~~a 444 (684)
T KOG4362|consen 365 TCEDCKLKGAHLGCLEKSCGSSEHVKCARGIKSCRNDGTTSKISNSSEGEARSEHEPCFIVLCPMESSTKEPEEKPGGYA 444 (684)
T ss_pred eeeeccccchhhhhhhcccccceeeeeccccccccCccchhccccCCcccccccccchhhcccccccccccccccccccc
Confidence 9999999999999999999999999999998788887 323 7899999999999999999877
Q ss_pred cccccCCCCCCCCCCCC-------CCCCCCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCC
Q 038256 461 IRNRAAPLQLTPQEPSF-------WGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKG 533 (691)
Q Consensus 461 krkk~~sk~l~~~~~s~-------~~~s~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~ 533 (691)
.+....+..-...++.+ .....+..++++++.+|+++++++.|.+++.. ++...|.+.+||||+.+++.|
T Consensus 445 ~~~~~~p~~~~~~qp~q~~~~~n~~~s~~~~~kk~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g 521 (684)
T KOG4362|consen 445 GSVKPRPKRHDVLQPAQDGSKDNETKSTHRFKKKLVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEG 521 (684)
T ss_pred ccccccccccccCCcccchhHhhhhhcccCcccceeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeeccccc
Confidence 77766665443333332 23367778899999999999999999999988 888999999999999999999
Q ss_pred cccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCCCCCcccccCCCCCCCCchhhhhhhhccCCCCCCCceEEEecCcCc
Q 038256 534 SCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFML 613 (691)
Q Consensus 534 ~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe~yei~~d~~~~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~ 613 (691)
+|.||+|||+||++|+|||++.|+.+|++.++|++|++|||++|..+..++|...|+++..+.++||.|+.|||.|+|..
T Consensus 522 ~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~~~~eepfEl~~d~~~~~~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~ 601 (684)
T KOG4362|consen 522 ACLRTLKVLMGILRGKWILSYDWVLASLKLRKWVSEEPFELQIDVPGAREGPKEKRLRAESYKPKLFEGLKFYFVGDFSN 601 (684)
T ss_pred chhhhHHHHHHhhcCceeeeHHHHHHHHHhcCCCCCCCeeEeecccCcccCcccccccccccCcchhcCCcceeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeCCCCCCCCcccchhhHHhhHHHHHHHHHhhcCccC
Q 038256 614 GYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLDFPEGSLIGEEVSTIWNRLNEAEELASKIGCRVI 691 (691)
Q Consensus 614 ~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i 691 (691)
+++++|++||.++||+|+...+.+.. ......+++++..++.. .++|+|.++||+||.+.+|+++
T Consensus 602 ~p~~~l~~l~~~~gg~~l~~~~~~~~------~~k~s~~~~~~~~~~~~-------~~~~~k~~~~ea~~~s~~a~~~ 666 (684)
T KOG4362|consen 602 PPKEQLQELVHLAGGTILQVPRVAYS------DKKKSTIVVLSEKPVLD-------SILWQKVNDAEALALSQRARAV 666 (684)
T ss_pred CcHHHHHHHHhhcCcceeeccCcccc------cccccceeEeecccCCC-------chhhhhhccHHHHHHhcCCCcc
Confidence 99999999999999999999877633 45566788888665553 4459999999999999999864
No 2
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.77 E-value=1e-19 Score=159.60 Aligned_cols=79 Identities=42% Similarity=0.978 Sum_probs=74.0
Q ss_pred EccccccCCCcEEcCC------cccCHHHHHHhccccccCcCCCC-CceeccCccCcccceecccccccCccccccC---
Q 038256 368 HSKCIEWAPQVYYAGD------TVKNLKAELARGSKLKCSRCGLK-GAALGCYVRSCRRSYHVPCALEISECRWDTE--- 437 (691)
Q Consensus 368 H~~CalWsp~v~~~~~------~l~~l~~~~~r~~~l~C~~C~~~-GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~--- 437 (691)
|++||+|+|||++.+. .+.+|+++++++++++|++|+++ ||+|+|...+|.++||++||+.+ |+.+++.
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~-~~~~~~~~~~ 79 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKA-GCFIEFDEDN 79 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccC-CeEEEEccCC
Confidence 8999999999999754 69999999999999999999999 99999999999999999999998 8887764
Q ss_pred -CceEeccccC
Q 038256 438 -NFLVLCPVHS 447 (691)
Q Consensus 438 -~~~~~C~~H~ 447 (691)
.+.+||++|+
T Consensus 80 ~~~~~~C~~H~ 90 (90)
T PF13771_consen 80 GKFRIFCPKHS 90 (90)
T ss_pred CceEEEChhcC
Confidence 7899999996
No 3
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.70 E-value=6.4e-18 Score=153.89 Aligned_cols=99 Identities=27% Similarity=0.606 Sum_probs=82.0
Q ss_pred cccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCC---cccCHHHHHHhccccccCcCCC
Q 038256 329 ICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGD---TVKNLKAELARGSKLKCSRCGL 405 (691)
Q Consensus 329 ~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~---~l~~l~~~~~r~~~l~C~~C~~ 405 (691)
.|.||+.. .|+|+.+. ++.|||..||+|.|+++|.+. .+.++.......++++|.+|++
T Consensus 2 ~C~lC~~~-----~Galk~t~-------------~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~ 63 (110)
T PF13832_consen 2 SCVLCPKR-----GGALKRTS-------------DGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGK 63 (110)
T ss_pred ccEeCCCC-----CCcccCcc-------------CCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCC
Confidence 69999986 57776643 457999999999999999864 2333666666678999999999
Q ss_pred C-CceeccCccCcccceecccccccCcccccc------CCceEecccc
Q 038256 406 K-GAALGCYVRSCRRSYHVPCALEISECRWDT------ENFLVLCPVH 446 (691)
Q Consensus 406 ~-GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~------~~~~~~C~~H 446 (691)
. |++|+|...+|.++||+.||+.+ |..++. ..+.+||++|
T Consensus 64 ~~G~~i~C~~~~C~~~fH~~CA~~~-g~~~~~~~~~~~~~~~~~C~~H 110 (110)
T PF13832_consen 64 SGGACIKCSHPGCSTAFHPTCARKA-GLYFEIENEEDNVQFIAYCPKH 110 (110)
T ss_pred CCceeEEcCCCCCCcCCCHHHHHHC-CCeEEeeecCCCceEEEECCCC
Confidence 8 99999999999999999999998 776554 2478999998
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.68 E-value=8.6e-18 Score=187.04 Aligned_cols=130 Identities=22% Similarity=0.426 Sum_probs=102.4
Q ss_pred hhhhccCCCCCCccCCCCCcccccccccCcC-----C-cccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEc
Q 038256 308 VAALASEKMPPISIDSCANNYICGFCQSSRI-----S-EVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYA 381 (691)
Q Consensus 308 ~c~~~~~~~~~~~~~~~~~~~~C~lC~~~~~-----~-~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~ 381 (691)
.|-++++.+.+.....+...|.|.-|-..-. . ..+|.|+... +...|+|+.||||.|||++.
T Consensus 293 ~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~------------sgT~wAHvsCALwIPEVsie 360 (893)
T KOG0954|consen 293 KCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTK------------SGTKWAHVSCALWIPEVSIE 360 (893)
T ss_pred cchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccC------------CCCeeeEeeeeeccceeecc
Confidence 5777888877777777777777665554311 0 1245555533 34589999999999999998
Q ss_pred CC----cccCHHHHHHhccccccCcCCCC-CceeccCccCcccceecccccccCcccc-------ccCCceEeccccCCC
Q 038256 382 GD----TVKNLKAELARGSKLKCSRCGLK-GAALGCYVRSCRRSYHVPCALEISECRW-------DTENFLVLCPVHSSV 449 (691)
Q Consensus 382 ~~----~l~~l~~~~~r~~~l~C~~C~~~-GA~I~C~~~~C~~~fH~~CA~~~~g~~~-------~~~~~~~~C~~H~~~ 449 (691)
+. ++.++..+...+|.|.|.+|+.+ ||||+|++++|.++||+.||+.+ |-.+ |...|..||.+|..-
T Consensus 361 ~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~a-G~~~~~~~~~~D~v~~~s~c~khs~~ 439 (893)
T KOG0954|consen 361 CPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEA-GLEMKTILKENDEVKFKSYCSKHSDH 439 (893)
T ss_pred CHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhc-CCeeeeeeccCCchhheeeccccccc
Confidence 64 78888888889999999999999 99999999999999999999998 5542 347788999999876
Q ss_pred C
Q 038256 450 K 450 (691)
Q Consensus 450 ~ 450 (691)
+
T Consensus 440 ~ 440 (893)
T KOG0954|consen 440 R 440 (893)
T ss_pred c
Confidence 5
No 5
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=99.58 E-value=2e-16 Score=169.22 Aligned_cols=140 Identities=17% Similarity=0.198 Sum_probs=103.6
Q ss_pred hhhhccCCCCCCccCCCCCcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCC----
Q 038256 308 VAALASEKMPPISIDSCANNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGD---- 383 (691)
Q Consensus 308 ~c~~~~~~~~~~~~~~~~~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~---- 383 (691)
+|.++++...+.-...+.+.|.|--|-.+...-.+-.|-. .-.|+|..+.++.|+|..||+|.|+++|.+.
T Consensus 215 gC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCp-----s~dGaFkqT~dgrW~H~iCA~~~pelsF~~l~~~d 289 (669)
T COG5141 215 GCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCP-----SSDGAFKQTSDGRWGHVICAMFNPELSFGHLLSKD 289 (669)
T ss_pred CcchhhhhhcccceecCcchhhhhhhcccccceeEEEecc-----CCCCceeeccCCchHhHhHHHhcchhccccccccc
Confidence 4667777666665666777777666655433221111111 1134566677789999999999999999864
Q ss_pred cccCHHHHHHhccccccCcCCCC-CceeccCccCcccceecccccccCccccc--c--------CCceEeccccCCCCCC
Q 038256 384 TVKNLKAELARGSKLKCSRCGLK-GAALGCYVRSCRRSYHVPCALEISECRWD--T--------ENFLVLCPVHSSVKFP 452 (691)
Q Consensus 384 ~l~~l~~~~~r~~~l~C~~C~~~-GA~I~C~~~~C~~~fH~~CA~~~~g~~~~--~--------~~~~~~C~~H~~~~~~ 452 (691)
++.||..+...+|++.|.+|++. |+||+|++.+|.++||++||+++ |...- + -....||.+|.+...-
T Consensus 290 pI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArra-g~f~~~~~s~n~~s~~id~e~~c~kh~p~gy~ 368 (669)
T COG5141 290 PIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRA-GYFDLNIYSHNGISYCIDHEPLCRKHYPLGYG 368 (669)
T ss_pred hhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhc-chhhhhhhcccccceeecchhhhcCCCCcchh
Confidence 88999999999999999999999 99999999999999999999998 54321 0 1234799999997664
Q ss_pred C
Q 038256 453 I 453 (691)
Q Consensus 453 ~ 453 (691)
.
T Consensus 369 ~ 369 (669)
T COG5141 369 R 369 (669)
T ss_pred c
Confidence 3
No 6
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.47 E-value=2.2e-14 Score=170.13 Aligned_cols=135 Identities=22% Similarity=0.351 Sum_probs=102.2
Q ss_pred hhhccCCCCCCccCCCCCcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCC----c
Q 038256 309 AALASEKMPPISIDSCANNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGD----T 384 (691)
Q Consensus 309 c~~~~~~~~~~~~~~~~~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~----~ 384 (691)
|-+++|--.+...--+.+.|.|.-|..+...... .++. ..-.|+|+.+.++.|+|+.||+|.|+|+|.+. +
T Consensus 242 Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~-c~~c----p~~~gAFkqt~dgrw~Hv~caiwipev~F~nt~~~E~ 316 (1051)
T KOG0955|consen 242 CNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVR-CLLC----PSKGGAFKQTDDGRWAHVVCAIWIPEVSFANTVFLEP 316 (1051)
T ss_pred CcchhhhhccCCCCCCCCcEeehhhccCcCcccc-eEec----cCCCCcceeccCCceeeeehhhcccccccccchhhcc
Confidence 4444543333333446788888888887444311 1222 22347788888999999999999999999865 7
Q ss_pred ccCHHHHHHhccccccCcCCCC--CceeccCccCcccceecccccccCcccccc--------------CCceEeccccCC
Q 038256 385 VKNLKAELARGSKLKCSRCGLK--GAALGCYVRSCRRSYHVPCALEISECRWDT--------------ENFLVLCPVHSS 448 (691)
Q Consensus 385 l~~l~~~~~r~~~l~C~~C~~~--GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~--------------~~~~~~C~~H~~ 448 (691)
+.+|+.+...+|++.|++|+.+ ||||+|+..+|..+||++||+++ |..+-. -....||.+|.+
T Consensus 317 I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~a-gl~m~~~~~~~~s~~~~s~~v~~~syC~~H~p 395 (1051)
T KOG0955|consen 317 IDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRA-GLYMKSNTVKELSKNGTSQSVNKISYCDKHTP 395 (1051)
T ss_pred ccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhc-CceEeecccccccccccccccceeeeccCCCC
Confidence 8888888877799999999999 79999999999999999999998 544221 256799999999
Q ss_pred C
Q 038256 449 V 449 (691)
Q Consensus 449 ~ 449 (691)
.
T Consensus 396 p 396 (1051)
T KOG0955|consen 396 P 396 (1051)
T ss_pred c
Confidence 5
No 7
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.46 E-value=2.7e-14 Score=158.22 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=107.9
Q ss_pred Cccchhh-hhhhccCCCCCCccCCCCCcccccccccCcCCc-ccceeeeecCCCccccccccCCCCeEEEccccccCCCc
Q 038256 301 SDSELKS-VAALASEKMPPISIDSCANNYICGFCQSSRISE-VTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQV 378 (691)
Q Consensus 301 ~~~~~~~-~c~~~~~~~~~~~~~~~~~~~~C~lC~~~~~~~-~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v 378 (691)
+.|-.+| .|.++++...+.--+++.+.|+|.-|-+-+... +.-.|-... .|+.+.+++.-|+|+.||||.|||
T Consensus 21 PLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~k-----dGALKkTDn~GWAHVVCALYIPEV 95 (900)
T KOG0956|consen 21 PLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHK-----DGALKKTDNGGWAHVVCALYIPEV 95 (900)
T ss_pred ceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCc-----ccceecccCCCceEEEEEeeccce
Confidence 3466666 899999999998889999999999887753322 111111111 244566777889999999999999
Q ss_pred EEcCC---cccCHHHHHHhccccccCcCCCC--------CceeccCccCcccceecccccccCccc-------cccCCce
Q 038256 379 YYAGD---TVKNLKAELARGSKLKCSRCGLK--------GAALGCYVRSCRRSYHVPCALEISECR-------WDTENFL 440 (691)
Q Consensus 379 ~~~~~---~l~~l~~~~~r~~~l~C~~C~~~--------GA~I~C~~~~C~~~fH~~CA~~~~g~~-------~~~~~~~ 440 (691)
.|.+. ..+=|..+...+....||+|... |||+.|...+|++.|||+||..+ |.. .|...|-
T Consensus 96 rFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~-GLLCEE~gn~~dNVKYC 174 (900)
T KOG0956|consen 96 RFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRA-GLLCEEEGNISDNVKYC 174 (900)
T ss_pred eecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhh-ccceeccccccccceec
Confidence 99875 22335666778888999999875 99999999999999999999997 543 2335667
Q ss_pred EeccccCC
Q 038256 441 VLCPVHSS 448 (691)
Q Consensus 441 ~~C~~H~~ 448 (691)
-||..|-.
T Consensus 175 GYCk~Hfs 182 (900)
T KOG0956|consen 175 GYCKYHFS 182 (900)
T ss_pred hhHHHHHH
Confidence 89999976
No 8
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.37 E-value=9.5e-13 Score=155.66 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=112.4
Q ss_pred EEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhCCCC
Q 038256 488 WVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPV 567 (691)
Q Consensus 488 ~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~v 567 (691)
+-+++++... ...+...++.+|+.+..++. ..||+|+. .++||+|||.||+.|+|||+++||.+|++.|.++
T Consensus 660 ~~~lfs~~~~--~~~~k~~~k~lg~s~~ss~~-e~Th~i~~-----rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~ 731 (896)
T KOG2043|consen 660 IEVLFSDKND--GKNYKLAKKFLGGSVASSDS-EATHFIAD-----RIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKL 731 (896)
T ss_pred eeeeeeeccC--chhhhhHHhhccceeecccc-cceeeeeh-----hhhccHHHHhhhccCCcccchHHHHHHhhccccc
Confidence 4566777665 34678888889999998854 69999998 5899999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhh
Q 038256 568 GEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELL 638 (691)
Q Consensus 568 dEe~yei~~d~~~~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~ 638 (691)
||++|.+.+.......+......-..+...++|.|+.+|++....+. ...+.+||+..||.|+...+.-.
T Consensus 732 dek~yil~D~ekEk~~gf~l~ssl~RAr~~plL~g~~v~vtp~v~p~-~~~v~eiie~~ggnvv~~~p~~~ 801 (896)
T KOG2043|consen 732 DEKPYILHDEEKEKEFGFRLKSSLLRARADPLLEGINVHVTPSVTPS-PKTVVEIIEISGGNVVSDSPKGV 801 (896)
T ss_pred cCccccccCHHHHhccCcchhhHHHHhhcchhhcCceEEeccccccC-cchhHHHHhhcCcceecccCccc
Confidence 99999997765444433332222111222379999999999765554 47999999999999999998854
No 9
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.16 E-value=1.1e-10 Score=98.42 Aligned_cols=74 Identities=31% Similarity=0.419 Sum_probs=67.9
Q ss_pred CCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHH
Q 038256 484 KAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACM 561 (691)
Q Consensus 484 ~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~ 561 (691)
.-+++.|+.++++..+++.|.++++.+||++...+++.+||||++.. ..++.|++.|+..|++||+++||.+|+
T Consensus 5 ~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~----~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 5 IFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNP----NKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSS----HCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCC----CCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 34677778899999999999999999999999999999999999864 468999999999999999999999996
No 10
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.1e-11 Score=127.27 Aligned_cols=108 Identities=31% Similarity=0.595 Sum_probs=91.0
Q ss_pred HHhhccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcCCCC---
Q 038256 31 LHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGLDAS--- 107 (691)
Q Consensus 31 ~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~~~--- 107 (691)
..+..+++++.||||+++|.+|++++|+|+||..|+..++.....||.||. .. ..+.+|..+.++++.+......
T Consensus 5 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~~~~~~ 82 (386)
T KOG2177|consen 5 ALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLRLSRPL 82 (386)
T ss_pred hhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-ch-hccCccHHHHHHHHHHHhcCCcccc
Confidence 346788899999999999999999999999999999999887789999996 32 3788999999999999876533
Q ss_pred -----CCccc---cccccccccc-ccccccccCCCCCceeee
Q 038256 108 -----PSSNL---LQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 108 -----~C~~~---~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
.|..+ ...||+++.. +|..|..++.|..|...+
T Consensus 83 ~~~~~~c~~~~~~~~~~c~~~~~~~c~~c~~~~~h~~h~~~~ 124 (386)
T KOG2177|consen 83 GSKEELCEKHGEELKLFCEEDEKLLCVLCRESGEHRGHPVLP 124 (386)
T ss_pred cccchhhhhcCCcceEEecccccccCCCCCCcccccCCcccc
Confidence 34442 4589999885 999998789999999844
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.11 E-value=5.2e-11 Score=97.34 Aligned_cols=63 Identities=29% Similarity=0.268 Sum_probs=55.3
Q ss_pred EEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhH
Q 038256 488 WVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDW 556 (691)
Q Consensus 488 ~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~W 556 (691)
++|++||+++.++..|.+++..+||.+.++++.++||||+.. ..+.||-.|..+|++||+++|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~------~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSS------PEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--------HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeC------CCcHHHHHHHHCCCcEECCCC
Confidence 589999999999999999999999999999999999999975 478999999999999999999
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=3.9e-11 Score=130.81 Aligned_cols=86 Identities=29% Similarity=0.672 Sum_probs=76.1
Q ss_pred CcccccChhhHHhhccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHH
Q 038256 21 NSKRSFNPLVLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAI 100 (691)
Q Consensus 21 ~~~~~~~~~~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~ 100 (691)
.++++..+..+.+..|+..+.|+||+++|.+|++++|||+||..||..++.....||.|+..+....+..|..|.+||+.
T Consensus 8 D~tDw~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~ 87 (397)
T TIGR00599 8 DSSDWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVES 87 (397)
T ss_pred CchhhccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHH
Confidence 34556655567789999999999999999999999999999999999999877789999999988889999999999999
Q ss_pred HhcCCC
Q 038256 101 YKGLDA 106 (691)
Q Consensus 101 ~~~~~~ 106 (691)
|+.+++
T Consensus 88 ~~~~R~ 93 (397)
T TIGR00599 88 FKNLRP 93 (397)
T ss_pred HHHhhH
Confidence 987544
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.05 E-value=3.4e-11 Score=90.56 Aligned_cols=38 Identities=50% Similarity=1.242 Sum_probs=30.6
Q ss_pred cccccccccCceecCCCCcccccccccccCC----CCCCCCC
Q 038256 42 CPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC----ESECPLC 79 (691)
Q Consensus 42 CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~----~~~CP~C 79 (691)
||||+++|++||+|+|||+||+.||.++|+. .+.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999964 3789987
No 14
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=99.03 E-value=2.7e-11 Score=130.60 Aligned_cols=134 Identities=19% Similarity=0.358 Sum_probs=89.6
Q ss_pred hhhhccCCCCCCc--cCCCCCcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCC--
Q 038256 308 VAALASEKMPPIS--IDSCANNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGD-- 383 (691)
Q Consensus 308 ~c~~~~~~~~~~~--~~~~~~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~-- 383 (691)
+|+...+.+++++ ++-+...|.|.-|...-.-+.+ .|-. | -.|-|+.++-+.|||..|||+.|||-|.+.
T Consensus 149 gCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~C-ElCP--n---~~GifKetDigrWvH~iCALYvpGVafg~~~~ 222 (707)
T KOG0957|consen 149 GCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHC-ELCP--N---RFGIFKETDIGRWVHAICALYVPGVAFGQTHT 222 (707)
T ss_pred cccccccccccCCCCccCCCCchhhhhHhcCCCCCcc-ccCC--C---cCCcccccchhhHHHHHHHhhcCccccccccc
Confidence 4555555555554 3333466777766653221100 0100 1 023455567779999999999999999753
Q ss_pred ----cccCHHHHHHhccccccCcCCCC-----CceeccCccCcccceecccccccCcccccc-------CCceEeccccC
Q 038256 384 ----TVKNLKAELARGSKLKCSRCGLK-----GAALGCYVRSCRRSYHVPCALEISECRWDT-------ENFLVLCPVHS 447 (691)
Q Consensus 384 ----~l~~l~~~~~r~~~l~C~~C~~~-----GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~-------~~~~~~C~~H~ 447 (691)
.+..+.. ...-...|+.|--+ |.||+|..+-|..+|||+||.+. |...+. +-|-+||.+|+
T Consensus 223 l~~Vtl~em~y--sk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~-GlLvea~~e~DiAdpfya~CK~Ht 299 (707)
T KOG0957|consen 223 LCGVTLEEMDY--SKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKL-GLLVEATDENDIADPFYAFCKKHT 299 (707)
T ss_pred cccccHHHhhh--hhhccchhccccchhhhhcceeeeccchhhhhhhhhhHHhhh-cceeeccccccchhhHHHHHHhhc
Confidence 4444442 22224689999865 99999999999999999999998 766543 45678999999
Q ss_pred CCC
Q 038256 448 SVK 450 (691)
Q Consensus 448 ~~~ 450 (691)
...
T Consensus 300 ~r~ 302 (707)
T KOG0957|consen 300 NRD 302 (707)
T ss_pred chh
Confidence 853
No 15
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.99 E-value=3e-10 Score=91.49 Aligned_cols=64 Identities=34% Similarity=0.833 Sum_probs=38.9
Q ss_pred hhccccccccccccccccCcee-cCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHH
Q 038256 33 LQKLALELKCPLCLNLFSRPLL-LPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENII 98 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~-l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 98 (691)
+..|++.+.|++|.+++++||. ..|.|.||..||...+. ..||+|+.+....+++.|+++.+|+
T Consensus 1 L~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 1 LERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHHH
T ss_pred ChHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhccC
Confidence 3568889999999999999985 58999999999988654 4599999999999999999999875
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.96 E-value=2.8e-10 Score=92.82 Aligned_cols=62 Identities=24% Similarity=0.426 Sum_probs=56.9
Q ss_pred ccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHH
Q 038256 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAI 100 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~ 100 (691)
++.||||++++.+|+.++|||+||+.||.++++....||.|+.++...++.+|..+.+.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 47899999999999999999999999999999878899999999988899999988887763
No 17
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.93 E-value=1.7e-10 Score=119.57 Aligned_cols=77 Identities=30% Similarity=0.673 Sum_probs=70.9
Q ss_pred hHHhhccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcCCC
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGLDA 106 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~~ 106 (691)
.+.+..|...|+|-||.+||.-|+++||+|+||..||..++.....||.|+..+...+++.|+.+..|++.|..++.
T Consensus 14 ipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 14 IPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFARN 90 (442)
T ss_pred CchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHHHH
Confidence 45577888999999999999999999999999999999999999999999999999999999999999999976443
No 18
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.92 E-value=2.4e-09 Score=87.18 Aligned_cols=70 Identities=27% Similarity=0.326 Sum_probs=60.5
Q ss_pred EEEEEcCCC-HHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 488 WVFCGSALS-VEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 488 ~vi~~Sgls-~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
+.|+.+|.. ...+..+.+++..+||.+...+++.+||||+...+.. .++..|+..|.+||+++||.+|++
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~-----~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGP-----KKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCc-----hHHHHHHHcCCeEecHHHHHHHhC
Confidence 457778877 7789999999999999999999999999999975322 238899999999999999999974
No 19
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.90 E-value=3.9e-09 Score=87.86 Aligned_cols=75 Identities=28% Similarity=0.402 Sum_probs=65.0
Q ss_pred ccEEEEEcC-CCHHHHHHHHHHHhhcCccEeeccCC-CceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHh
Q 038256 486 KEWVFCGSA-LSVEEKLLLVRFGNMIGVPVSKFWKP-NVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEA 563 (691)
Q Consensus 486 ~~~vi~~Sg-ls~~ek~~l~~~~~~lG~~v~~~~~~-~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~ 563 (691)
.++.|+++| ++...++.+.+++..+||++...++. ++||||+.+.... ..++..|...+.+||+++||.+|+++
T Consensus 4 ~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~----~~~~~~~~~~~~~iV~~~Wi~~~~~~ 79 (80)
T smart00292 4 KGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGG----KLELLLAIALGIPIVTEDWLLDCLKA 79 (80)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCc----cHHHHHHHHcCCCCccHHHHHHHHHC
Confidence 567788888 88899999999999999999999998 8999999875332 23388999999999999999999986
Q ss_pred C
Q 038256 564 M 564 (691)
Q Consensus 564 g 564 (691)
+
T Consensus 80 ~ 80 (80)
T smart00292 80 G 80 (80)
T ss_pred c
Confidence 4
No 20
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.81 E-value=2e-09 Score=90.87 Aligned_cols=67 Identities=25% Similarity=0.400 Sum_probs=57.1
Q ss_pred cccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccccCCCchHHHHHHHHHHhcC
Q 038256 38 LELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 104 (691)
++|.|||+.+++.+||.+++||+|++.||..|+.. ...||.|+.++...++.+|..|.+.++.+...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999987 89999999999999999999999999998653
No 21
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=98.74 E-value=1.2e-08 Score=107.37 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=81.9
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
-+++||+.|||...+|..|...+..|||+|-.+|+..+||||+. +..|.||-.....|-.||+.+||.+|.+..
T Consensus 318 L~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICA------F~NTPKy~QV~g~Gg~IV~keWI~~Cy~~k 391 (508)
T KOG3226|consen 318 LEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICA------FPNTPKYRQVEGNGGTIVSKEWITECYAQK 391 (508)
T ss_pred hhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEe------cCCCcchhhcccCCceEeeHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999997 679999999999999999999999999999
Q ss_pred CCCCCCCccccc
Q 038256 565 NPVGEEPYEINL 576 (691)
Q Consensus 565 ~~vdEe~yei~~ 576 (691)
+.||-..|.+.+
T Consensus 392 k~lp~rrYlm~~ 403 (508)
T KOG3226|consen 392 KLLPIRRYLMHA 403 (508)
T ss_pred hhccHHHHHhcC
Confidence 999999999854
No 22
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.67 E-value=6e-09 Score=102.57 Aligned_cols=57 Identities=32% Similarity=0.765 Sum_probs=47.7
Q ss_pred hccccccccccccccccCceecCCCCcccccccccccC----------------CCCCCCCCCCCccccCCCc
Q 038256 34 QKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ----------------CESECPLCKSQCTYADLRP 90 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~----------------~~~~CP~Cr~~~~~~~l~~ 90 (691)
-++.+++.|+||++.+++|+.++|||.||..||..|+. ....||.||..+....+.+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 35567799999999999999999999999999998852 2468999999987655543
No 23
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.63 E-value=1.1e-08 Score=104.29 Aligned_cols=77 Identities=26% Similarity=0.447 Sum_probs=68.7
Q ss_pred hHHhhccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcCCC
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGLDA 106 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~~ 106 (691)
.+.+.-|...+.|-||.++|..|+.++|||+||..||.+.+.+...||+||.+.....++.+..+..+++.|.....
T Consensus 16 IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~ 92 (391)
T COG5432 16 IPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRD 92 (391)
T ss_pred CcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccH
Confidence 44466777889999999999999999999999999999999999999999999988888999999999988876543
No 24
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.55 E-value=1.1e-08 Score=75.58 Aligned_cols=38 Identities=39% Similarity=1.222 Sum_probs=33.7
Q ss_pred cccccccccCc-eecCCCCcccccccccccCCCCCCCCC
Q 038256 42 CPLCLNLFSRP-LLLPCDHIFCNSCIPRSAQCESECPLC 79 (691)
Q Consensus 42 CpIC~e~~~~P-v~l~CgHsFC~~Ci~~~~~~~~~CP~C 79 (691)
|+||++.+.+| +.++|||+||..|+.++++....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999999999999778899987
No 25
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.44 E-value=4.1e-08 Score=76.62 Aligned_cols=47 Identities=32% Similarity=0.930 Sum_probs=41.4
Q ss_pred cccccccccccccCceecCCCCc-ccccccccccCCCCCCCCCCCCcc
Q 038256 38 LELKCPLCLNLFSRPLLLPCDHI-FCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l~CgHs-FC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
|+..|+||++...+++.+||||. ||..|+.++++....||+||.++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 45789999999999999999999 999999999998999999999874
No 26
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=98.42 E-value=6.5e-08 Score=105.87 Aligned_cols=85 Identities=28% Similarity=0.436 Sum_probs=78.1
Q ss_pred CCCeEEEccccccCCCcEEcCC-cccCHHHHHHhccccccCcCCCCCceeccCccCcccceecccccccCccccccCCce
Q 038256 362 SHVIHVHSKCIEWAPQVYYAGD-TVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFL 440 (691)
Q Consensus 362 ~~~~wvH~~CalWsp~v~~~~~-~l~~l~~~~~r~~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~ 440 (691)
+...|.|++|++|+|.+++.++ .+.++.+++.+.+.+.|..|+++||++.|...+|...+|++|+... .+++......
T Consensus 236 ~~~~~~h~~c~~~~~~~~~~q~~~l~~~~~~v~r~~~~~c~~c~k~ga~~~c~~~~~~~~~h~~c~~~~-~~~~~~~~r~ 314 (375)
T KOG1084|consen 236 GFELWYHRYCALWAPNVHESQGGQLTNVDNAVIRFPSLQCILCQKPGATLKCVQASLLSNAHFPCARAK-NGIPLDYDRK 314 (375)
T ss_pred chhHHHHHHHHhcCCcceeccCccccCchhhhhcccchhcccccCCCCchhhhhhhhhcccCcccccCc-ccccchhhhh
Confidence 5678999999999999999855 9999999999999999999999999999999999999999999998 5555445788
Q ss_pred EeccccC
Q 038256 441 VLCPVHS 447 (691)
Q Consensus 441 ~~C~~H~ 447 (691)
++|+.|+
T Consensus 315 v~~~~h~ 321 (375)
T KOG1084|consen 315 VSCPRHR 321 (375)
T ss_pred ccCCCCC
Confidence 9999999
No 27
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.37 E-value=6.8e-08 Score=72.00 Aligned_cols=38 Identities=47% Similarity=1.308 Sum_probs=35.7
Q ss_pred cccccccccCce-ecCCCCcccccccccccC--CCCCCCCC
Q 038256 42 CPLCLNLFSRPL-LLPCDHIFCNSCIPRSAQ--CESECPLC 79 (691)
Q Consensus 42 CpIC~e~~~~Pv-~l~CgHsFC~~Ci~~~~~--~~~~CP~C 79 (691)
|+||++.+.+|+ +++|||+||..|+.++++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 999999999999999997 57889987
No 28
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=8.9e-08 Score=92.11 Aligned_cols=54 Identities=31% Similarity=0.838 Sum_probs=46.3
Q ss_pred ccccccccccccccC--ceecCCCCcccccccccccCCCCCCCCCCCCccccCCCc
Q 038256 37 ALELKCPLCLNLFSR--PLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRP 90 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~--Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 90 (691)
+..+.||||++-+.+ |+.+.|||.||..||...++....||+|++.+..+.|..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 344889999999975 678999999999999999999999999999877665543
No 29
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.30 E-value=6e-08 Score=73.58 Aligned_cols=40 Identities=40% Similarity=1.100 Sum_probs=35.1
Q ss_pred cccccccccc---CceecCCCCcccccccccccCCCCCCCCCC
Q 038256 41 KCPLCLNLFS---RPLLLPCDHIFCNSCIPRSAQCESECPLCK 80 (691)
Q Consensus 41 ~CpIC~e~~~---~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr 80 (691)
.|+||++.|. .++.++|+|.||..||.+|++....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999995 457889999999999999998888999997
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.29 E-value=9.8e-08 Score=72.05 Aligned_cols=35 Identities=43% Similarity=1.321 Sum_probs=22.4
Q ss_pred cccccccccC----ceecCCCCcccccccccccC----CCCCCC
Q 038256 42 CPLCLNLFSR----PLLLPCDHIFCNSCIPRSAQ----CESECP 77 (691)
Q Consensus 42 CpIC~e~~~~----Pv~l~CgHsFC~~Ci~~~~~----~~~~CP 77 (691)
||||.+ |.+ |+.|+|||+||+.||.++++ +.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 99999999999999999885 356776
No 31
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.27 E-value=2.9e-07 Score=94.37 Aligned_cols=48 Identities=25% Similarity=0.781 Sum_probs=41.4
Q ss_pred ccccccccccccccCc--------eecCCCCcccccccccccCCCCCCCCCCCCcc
Q 038256 37 ALELKCPLCLNLFSRP--------LLLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~P--------v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
.++..|+||++.+.++ ++++|+|.||..||.+|++...+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4568899999987653 56789999999999999988889999998774
No 32
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.23 E-value=4.1e-06 Score=98.61 Aligned_cols=133 Identities=21% Similarity=0.158 Sum_probs=108.3
Q ss_pred CCCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHH
Q 038256 481 SPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKAC 560 (691)
Q Consensus 481 s~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c 560 (691)
...+-.++.|+.++++++.++.|.+.+.++||.+..+++.+|||||++.- -+-||..|-..|+.|++.+|+...
T Consensus 6 ~~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~------~s~~~~~a~~~~~~~~~~~wi~~~ 79 (811)
T KOG1929|consen 6 YSKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSV------TSSKYAAAHRFDIKVLDSSWIDYI 79 (811)
T ss_pred cCcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeecccc------cccchhhhhcCCCceecchHHHHH
Confidence 34566899999999999999999999999999999999999999999964 445889999999999999999988
Q ss_pred HHhCCCCCCC--CcccccCCCCCCCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchh
Q 038256 561 MEAMNPVGEE--PYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGEL 637 (691)
Q Consensus 561 ~~~g~~vdEe--~yei~~d~~~~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~ 637 (691)
...... ..+ .+....+. ..-..|.|+.++++| +....|.++..+|-..||+........
T Consensus 80 ~d~~~~-~~e~~~~~~l~~~----------------~~~p~~~~~~Vc~tg-l~~~eK~ei~~~v~k~gg~~~~~L~s~ 140 (811)
T KOG1929|consen 80 YDLWLL-NKEIRLLDPLRDT----------------MKCPGFFGLKVCLTG-LSGDEKSEIKILVPKHGGTLHRSLSSD 140 (811)
T ss_pred HHHhhh-hccCccCccchhh----------------hcCCcccceEEEecc-cchHHHHHHHHHhhhcccEEehhhhhh
Confidence 877665 211 11111111 113479999999998 777788999999999999999887443
No 33
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.6e-07 Score=91.71 Aligned_cols=52 Identities=31% Similarity=0.796 Sum_probs=45.3
Q ss_pred ccccccccccccccCceecCCCCcccccccccccC---CCCCCCCCCCCccccCC
Q 038256 37 ALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ---CESECPLCKSQCTYADL 88 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~---~~~~CP~Cr~~~~~~~l 88 (691)
...+.|.||++.-+|||.+.|||.||..||.+|+. +...||+|+..+....+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 45688999999999999999999999999999996 36779999988866544
No 34
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.9e-07 Score=93.99 Aligned_cols=53 Identities=40% Similarity=0.803 Sum_probs=47.6
Q ss_pred cccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCC
Q 038256 36 LALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADL 88 (691)
Q Consensus 36 l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 88 (691)
.+....|.+|++...+|.-+||||.||..||..|......||+||..+++..+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 34558899999999999999999999999999999988889999999977653
No 35
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.16 E-value=7.9e-07 Score=67.55 Aligned_cols=41 Identities=34% Similarity=1.074 Sum_probs=36.0
Q ss_pred ccccccccc---cCceecCCCCcccccccccccCCCCCCCCCCC
Q 038256 41 KCPLCLNLF---SRPLLLPCDHIFCNSCIPRSAQCESECPLCKS 81 (691)
Q Consensus 41 ~CpIC~e~~---~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~ 81 (691)
.|+||.+.| ..|++++|||+||..|+.........||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999999 35789999999999999998866889999974
No 36
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.11 E-value=8.3e-07 Score=66.24 Aligned_cols=42 Identities=43% Similarity=1.218 Sum_probs=36.9
Q ss_pred ccccccccccCceecC-CCCcccccccccccCC-CCCCCCCCCC
Q 038256 41 KCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQC-ESECPLCKSQ 82 (691)
Q Consensus 41 ~CpIC~e~~~~Pv~l~-CgHsFC~~Ci~~~~~~-~~~CP~Cr~~ 82 (691)
.|+||++.+.+++.++ |||.||..|+..++.. ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998887665 9999999999999875 7889999875
No 37
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.03 E-value=1.3e-06 Score=93.54 Aligned_cols=34 Identities=38% Similarity=1.083 Sum_probs=31.3
Q ss_pred cccccccccccccccCceecCCCCcccccccccc
Q 038256 36 LALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS 69 (691)
Q Consensus 36 l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~ 69 (691)
|||+|.||||..+|++|++|+|+|+.|+.|....
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 6899999999999999999999999999998543
No 38
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.95 E-value=2.4e-06 Score=61.42 Aligned_cols=38 Identities=45% Similarity=1.274 Sum_probs=34.7
Q ss_pred cccccccccCceecCCCCcccccccccccC-CCCCCCCC
Q 038256 42 CPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ-CESECPLC 79 (691)
Q Consensus 42 CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~-~~~~CP~C 79 (691)
|+||++...+++.++|+|.||..|+..++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999887 56779987
No 39
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.90 E-value=3.6e-05 Score=90.90 Aligned_cols=146 Identities=16% Similarity=0.100 Sum_probs=110.1
Q ss_pred CCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHH
Q 038256 482 PNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACM 561 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~ 561 (691)
...-.+.+||.|||+..||..+..++..+||++...+...++||++.. ..-|.||-+|+.+.+.||+.+|+.+|+
T Consensus 101 ~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~-----~~~~~kYe~al~wn~~v~~~~w~~~s~ 175 (811)
T KOG1929|consen 101 CPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILP-----EVKTEKYEQALKWNIPVVSDDWLFDSI 175 (811)
T ss_pred CCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeecc-----ccchHHHHHHHhhCCccccHHHHhhhh
Confidence 334568899999999999999999999999999999999999999985 345689999999999999999999999
Q ss_pred HhCCCCCCCCcccccCC------------CCCCCCc------------hhhhhhh--hccCCCCCCCceEEEecCcCccc
Q 038256 562 EAMNPVGEEPYEINLDN------------HGCEEGP------------KTGRLRA--LNKAPKLFDGLSFYFSGNFMLGY 615 (691)
Q Consensus 562 ~~g~~vdEe~yei~~d~------------~~~~~gp------------~~~R~~~--~~~~~~LF~G~~f~l~g~~~~~~ 615 (691)
..+..+++.+|++.--. .....+- ...+... -+...++..++..++.| +....
T Consensus 176 ~~~~~~~~~~~e~~~~~~~is~~~~~~~~~~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~~c~v~~s~-~~~~~ 254 (811)
T KOG1929|consen 176 EKTAVLETKPYEGAPVAEAISGPIGSTLPKEILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLDDCLVETSG-TTSRN 254 (811)
T ss_pred cccccccccccccccccceeccCCccccccccccccchhhhccccchhcccccccchhhhhccccccceeeecC-Ccccc
Confidence 99999999999983210 0000000 0111000 00112357788888887 55666
Q ss_pred HHHHHHHHHhCCCEEEec
Q 038256 616 KEDLQSLVITAGGTIWKS 633 (691)
Q Consensus 616 k~~L~~LI~~~GG~Vl~~ 633 (691)
++.|.+++..+||.=...
T Consensus 255 ~s~l~r~~~~g~~~~~~e 272 (811)
T KOG1929|consen 255 RSALSRLSNNGGSLRFLE 272 (811)
T ss_pred hhHhHHhhhcccceeecc
Confidence 789999999998865443
No 40
>PHA02926 zinc finger-like protein; Provisional
Probab=97.87 E-value=3.9e-06 Score=83.80 Aligned_cols=52 Identities=29% Similarity=0.793 Sum_probs=40.9
Q ss_pred hhccccccccccccccccC---------ceecCCCCcccccccccccCC------CCCCCCCCCCcc
Q 038256 33 LQKLALELKCPLCLNLFSR---------PLLLPCDHIFCNSCIPRSAQC------ESECPLCKSQCT 84 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~---------Pv~l~CgHsFC~~Ci~~~~~~------~~~CP~Cr~~~~ 84 (691)
+-...++..|+||++..-+ +++.+|+|.||..||..|.+. ...||.||..+.
T Consensus 164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3445568999999988633 356699999999999999853 356999999874
No 41
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=6e-06 Score=91.24 Aligned_cols=54 Identities=39% Similarity=0.900 Sum_probs=47.3
Q ss_pred ccccccccccccCceecCCCCcccccccccccC-----CCCCCCCCCCCccccCCCchH
Q 038256 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ-----CESECPLCKSQCTYADLRPLA 92 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~l~~n~ 92 (691)
...||||++...-|+.+.|||.||..||.++|. +...||+|+..+.++++.+-+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 788999999999999999999999999999885 357899999999888766543
No 42
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=9e-06 Score=83.10 Aligned_cols=52 Identities=35% Similarity=0.749 Sum_probs=44.0
Q ss_pred ccccccccccccccCceecCCCCccccccccc-ccCCCCC-CCCCCCCccccCC
Q 038256 37 ALELKCPLCLNLFSRPLLLPCDHIFCNSCIPR-SAQCESE-CPLCKSQCTYADL 88 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~-~~~~~~~-CP~Cr~~~~~~~l 88 (691)
+.++.|+||++....|..++|||.||..||.. |....+. ||+||....+..+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 56788999999999999999999999999999 5555554 9999998866543
No 43
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.62 E-value=0.00012 Score=85.30 Aligned_cols=148 Identities=14% Similarity=0.009 Sum_probs=85.7
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCC-ceEEEecCCC-------------C-------CcccchHHHHH
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPN-VTHVIAATDA-------------K-------GSCTRTLKVLM 543 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~-vTHlI~~~~~-------------~-------~~~~RT~K~L~ 543 (691)
..+.||++|++..+. +.....+...||.|.+..-.. ++|=.++... . -...||.|||.
T Consensus 926 Fd~cvF~lTsa~~sd-~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~KYLe 1004 (1176)
T KOG3548|consen 926 FDGCVFMLTSANRSD-SASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHKYLE 1004 (1176)
T ss_pred hcceeEEEeccccch-hhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHHHHH
Confidence 467788888887543 344444444677766542222 3332222110 0 02469999999
Q ss_pred HHHcCCeEeehhHHHHHHHhCCCCCCCCcccc-cCCCCC----CCCch-hhhhhhhc----cCCCCCCCceEEEecCcCc
Q 038256 544 AILNGNWVLKIDWIKACMEAMNPVGEEPYEIN-LDNHGC----EEGPK-TGRLRALN----KAPKLFDGLSFYFSGNFML 613 (691)
Q Consensus 544 Aia~G~wIVs~~Wl~~c~~~g~~vdEe~yei~-~d~~~~----~~gp~-~~R~~~~~----~~~~LF~G~~f~l~g~~~~ 613 (691)
|||.|++.|++.||.+|++++++||-.+|.+- |..+.. ..+++ ..+...+. .-.+-+.+..+.+.|.- .
T Consensus 1005 aLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~gp~-~ 1083 (1176)
T KOG3548|consen 1005 ALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTGPG-G 1083 (1176)
T ss_pred HHHcCCCcccHHHHHHHHhccccccchhhcccCccccccccccccCccccCchhhccceeeEeeccccceeEEEecCC-c
Confidence 99999999999999999999999999999873 322221 12221 11111000 01122334444444432 3
Q ss_pred ccHHHHHHHHHhCCCEEEecC
Q 038256 614 GYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 614 ~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..-+.+..++++||.-+++-.
T Consensus 1084 ~f~e~~~e~le~G~aa~vd~~ 1104 (1176)
T KOG3548|consen 1084 TFIEIWKEILELGGAAVVDGY 1104 (1176)
T ss_pred chHHHHHHHHHhhchheeccc
Confidence 344667777777777776653
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=5.3e-06 Score=87.65 Aligned_cols=69 Identities=28% Similarity=0.677 Sum_probs=54.3
Q ss_pred HhhccccccccccccccccCceec-CCCCcccccccccccC-CCCCCCCCCCCccc-cCCCchHHHHHHHHH
Q 038256 32 HLQKLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQ-CESECPLCKSQCTY-ADLRPLAFLENIIAI 100 (691)
Q Consensus 32 ~~~~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~-~~~~CP~Cr~~~~~-~~l~~n~~l~~lv~~ 100 (691)
.+..+.-++.||||+++++..+++ .|+|.||..||-..++ +...||.||+.+-. +.|+.+.....|+..
T Consensus 36 ~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~ 107 (381)
T KOG0311|consen 36 DLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISK 107 (381)
T ss_pred cHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHH
Confidence 367888899999999999999866 5999999999988775 57899999998854 456655444444443
No 45
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.59 E-value=0.00013 Score=88.65 Aligned_cols=91 Identities=9% Similarity=0.011 Sum_probs=78.2
Q ss_pred CCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHH
Q 038256 482 PNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACM 561 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~ 561 (691)
..+-.+++|+.+|-....+..+.+.+..+||++...++..+||||+... .-++..|+-.|...|+.||+.+||.+|+
T Consensus 391 ~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e---~~k~~~kv~qAk~~~ipIVsedwL~ds~ 467 (981)
T PLN03123 391 SEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGE---LDDEDAEMRKARRMKIPIVREDYLVDCF 467 (981)
T ss_pred CCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHH---hhhcchHHHHHHhcCCCcccHHHHHHHH
Confidence 3556788999999666666899999999999999999999999998853 2356788999999999999999999999
Q ss_pred HhCCCCCCCCcccc
Q 038256 562 EAMNPVGEEPYEIN 575 (691)
Q Consensus 562 ~~g~~vdEe~yei~ 575 (691)
+.+..+++..|.+.
T Consensus 468 ~~~~~~p~~~y~~~ 481 (981)
T PLN03123 468 KKKKKLPFDKYKLE 481 (981)
T ss_pred hccccCcchhhhhc
Confidence 99999999999764
No 46
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.58 E-value=3.1e-05 Score=81.93 Aligned_cols=51 Identities=25% Similarity=0.729 Sum_probs=39.9
Q ss_pred cccccccccc-ccCce---ec-CCCCcccccccccccC-CCCCCCCCCCCccccCCC
Q 038256 39 ELKCPLCLNL-FSRPL---LL-PCDHIFCNSCIPRSAQ-CESECPLCKSQCTYADLR 89 (691)
Q Consensus 39 ~l~CpIC~e~-~~~Pv---~l-~CgHsFC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~ 89 (691)
+..||+|... |.+|- ++ +|||.||..|+...|. +...||.|+..+...++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 3579999973 55563 22 6999999999999874 467899999999877643
No 47
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.56 E-value=0.00012 Score=83.36 Aligned_cols=127 Identities=21% Similarity=0.296 Sum_probs=96.3
Q ss_pred CCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHH
Q 038256 482 PNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACM 561 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~ 561 (691)
+.+-+.+|+|++|+-.... .+..++..+||.|..+.+..+||+|+...+. .||-.|+.. ..++.++||.+++
T Consensus 116 ~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~g------ek~~~a~t~-~~~~rp~wv~~aw 187 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEG------EKQSIALVG-VPTMRPDWVTEAW 187 (850)
T ss_pred chhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccc------eEEEEEeec-cceechHhhhhhh
Confidence 3345789999999987665 8888999999999999999999999986533 255555554 8999999999999
Q ss_pred HhCCCCCCCCcccccCCCCCCCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEe
Q 038256 562 EAMNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWK 632 (691)
Q Consensus 562 ~~g~~vdEe~yei~~d~~~~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~ 632 (691)
+.-.|++ |.+..+.+- ...| -+.|.|..|+|.| |.....+.+.+..+.-||....
T Consensus 188 ~~rn~~y---fda~~~~f~-----d~hr-------l~~feg~~~~f~g-F~~ee~~~m~~sle~~gg~~a~ 242 (850)
T KOG3524|consen 188 KHRNDSY---FDAMEPCFV-----DKHR-------LGVFEGLSLFFHG-FKQEEIDDMLRSLENTGGKLAP 242 (850)
T ss_pred cCcchhh---hhhhccchh-----hhhc-------cccccCCeEeecC-CcHHHHHHHHHHHHhcCCcccC
Confidence 8765543 333221111 1122 3579999999998 6666667899999999998877
No 48
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.55 E-value=1.5e-05 Score=83.91 Aligned_cols=69 Identities=26% Similarity=0.549 Sum_probs=57.2
Q ss_pred hhccccccccccccccccCceec-CCCCcccccccccccCCCCCCCCCCCCcccc----CCCchHHHHHHHHHH
Q 038256 33 LQKLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQCESECPLCKSQCTYA----DLRPLAFLENIIAIY 101 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~----~l~~n~~l~~lv~~~ 101 (691)
+..+...++|.+|..||.|+.++ -|.|+||++||.+.+.....||.|...+-.. .+..+..|+.|+-.+
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 45677789999999999999866 5999999999999998899999999876443 566777777777655
No 49
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.40 E-value=5e-05 Score=64.21 Aligned_cols=40 Identities=35% Similarity=0.933 Sum_probs=33.2
Q ss_pred ccccccccccC------------c-eecCCCCcccccccccccCCCCCCCCCC
Q 038256 41 KCPLCLNLFSR------------P-LLLPCDHIFCNSCIPRSAQCESECPLCK 80 (691)
Q Consensus 41 ~CpIC~e~~~~------------P-v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr 80 (691)
.|+||++.|.+ + +..+|||.|...||.+|++....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 39999999943 2 3458999999999999999888999997
No 50
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.36 E-value=0.00034 Score=83.32 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=72.3
Q ss_pred CCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcc-cc-hHHHHHHHHcCCeEeehhHHHHHH
Q 038256 484 KAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSC-TR-TLKVLMAILNGNWVLKIDWIKACM 561 (691)
Q Consensus 484 ~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~-~R-T~K~L~Aia~G~wIVs~~Wl~~c~ 561 (691)
+-.+++|++||--...|+.+++.+..+||++..++ ..+||+|+...+ . +. +-|+-.|...|+.||+.+||.+++
T Consensus 189 pL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~e---v~k~gsSKlkkAk~lgIpIVsEd~L~d~i 264 (815)
T PLN03122 189 PFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAE---RERGGSSKIAEAMERGIPVVREAWLIDSI 264 (815)
T ss_pred CcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCcc---ccccCccHHHHHHHcCCcCccHHHHHHHH
Confidence 34566677777544478899999999999999998 678899987532 1 12 358889999999999999999999
Q ss_pred HhCCCCCCCCcccc
Q 038256 562 EAMNPVGEEPYEIN 575 (691)
Q Consensus 562 ~~g~~vdEe~yei~ 575 (691)
+.+..+++.+|.+.
T Consensus 265 ~~~k~~~~~~y~l~ 278 (815)
T PLN03122 265 EKQEAQPLEAYDVV 278 (815)
T ss_pred hcCCcccchhhhhc
Confidence 99999999999884
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=7.5e-05 Score=82.16 Aligned_cols=51 Identities=35% Similarity=0.894 Sum_probs=46.6
Q ss_pred ccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 35 KLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
.+..++.|.||...|-+|+++||||+||..||.+.+.....||.||.++..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 447789999999999999999999999999999988888999999998864
No 52
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=5e-05 Score=87.91 Aligned_cols=61 Identities=23% Similarity=0.659 Sum_probs=52.8
Q ss_pred hHHhhccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccccCCCc
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADLRP 90 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 90 (691)
..-+..+..-|+||+|..-+++.+++.|+|.||..|+...... ...||.|...|...++.+
T Consensus 634 ~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 634 AEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3446777888999999999999999999999999999988864 678999999998877654
No 53
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.98 E-value=0.00021 Score=69.94 Aligned_cols=47 Identities=28% Similarity=0.677 Sum_probs=42.7
Q ss_pred ccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
.+.|-||.+.|..||.+.|||+||..|..+-.+....|-+|.+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 47899999999999999999999999999888889999999887643
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00054 Score=71.29 Aligned_cols=45 Identities=33% Similarity=0.843 Sum_probs=41.7
Q ss_pred cccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcc
Q 038256 40 LKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 40 l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
+.|-||.++|.+||.+.|+|+||..|....++....|++|...+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 569999999999999999999999999999988899999987764
No 55
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=96.86 E-value=0.0062 Score=70.92 Aligned_cols=85 Identities=21% Similarity=0.076 Sum_probs=67.3
Q ss_pred ccEEEEEcCCCHHH-HHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 486 KEWVFCGSALSVEE-KLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 486 ~~~vi~~Sgls~~e-k~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
.--+.+++|.+.+. |..+++++..+||.++.++.++.||.|+-.+ ..-|.+-..|+.+++-||.++||.+|.+..
T Consensus 636 gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~----~et~~vk~~~~~~~cdVl~p~Wlldcc~~~ 711 (881)
T KOG0966|consen 636 GLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAG----KETTRVKAQAIKRSCDVLKPAWLLDCCKKQ 711 (881)
T ss_pred CeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEecc----ccchHHHHHHHhccCceeeHHHHHHHHhhh
Confidence 33344556666555 7999999999999999999999999996322 235556668888999999999999999999
Q ss_pred CCCCCCCccc
Q 038256 565 NPVGEEPYEI 574 (691)
Q Consensus 565 ~~vdEe~yei 574 (691)
++++-.++.+
T Consensus 712 ~l~p~~P~~~ 721 (881)
T KOG0966|consen 712 RLLPWLPRDL 721 (881)
T ss_pred hccccccHHH
Confidence 9888766543
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.79 E-value=0.00099 Score=73.98 Aligned_cols=54 Identities=31% Similarity=0.866 Sum_probs=48.3
Q ss_pred hccccccccccccccccCcee-cCCCCcccccccccccCCCCCCCCCCCCccccC
Q 038256 34 QKLALELKCPLCLNLFSRPLL-LPCDHIFCNSCIPRSAQCESECPLCKSQCTYAD 87 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv~-l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 87 (691)
..+++++.|++|...+.+|+. +.|||.||..|+..+......||.|+.......
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 458899999999999999998 599999999999999988899999988776653
No 57
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00083 Score=70.09 Aligned_cols=46 Identities=30% Similarity=0.662 Sum_probs=40.8
Q ss_pred ccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCcccc
Q 038256 41 KCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYA 86 (691)
Q Consensus 41 ~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 86 (691)
.|+||+....-|+.|+|+|-||.-||...... ...|++||.++...
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999987654 66799999998654
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.65 E-value=0.00049 Score=55.33 Aligned_cols=42 Identities=33% Similarity=0.725 Sum_probs=29.9
Q ss_pred ccccccccccccccCcee-cCCCCcccccccccccC--CCCCCCC
Q 038256 37 ALELKCPLCLNLFSRPLL-LPCDHIFCNSCIPRSAQ--CESECPL 78 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~-l~CgHsFC~~Ci~~~~~--~~~~CP~ 78 (691)
...+.|||.+..|.+||. ..|+|+|.+..|..+++ ....||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 446889999999999985 58999999999999993 4778998
No 59
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.00054 Score=79.33 Aligned_cols=47 Identities=32% Similarity=0.762 Sum_probs=42.8
Q ss_pred ccccccccccccccC-----ceecCCCCcccccccccccCCCCCCCCCCCCc
Q 038256 37 ALELKCPLCLNLFSR-----PLLLPCDHIFCNSCIPRSAQCESECPLCKSQC 83 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~-----Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~ 83 (691)
.....|+||.+.+.. |..++|+|.|+..|+..|++...+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 346789999999998 89999999999999999999999999999844
No 60
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.41 E-value=0.0017 Score=67.34 Aligned_cols=64 Identities=30% Similarity=0.611 Sum_probs=49.9
Q ss_pred cccccccccccCceec-CCCCcccccccccccC-CCCCCCCCCC-CccccCCCchHHHHHHHHHHhc
Q 038256 40 LKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQ-CESECPLCKS-QCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 40 l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~-~~~~CP~Cr~-~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
|.||+|..++++|+.+ .|+|.||..||...+- ..+.||.|.. .+-+..|.++...+.-|+.+..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 8999999999999977 5899999999997764 4799999965 3344566677666666665543
No 61
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0024 Score=68.21 Aligned_cols=100 Identities=19% Similarity=0.326 Sum_probs=71.0
Q ss_pred cccccccccccc------CceecCCCCcccccccccccCC-CCCCCCCCCCccc-----cCCCchHHHHHHHHHHhcC--
Q 038256 39 ELKCPLCLNLFS------RPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTY-----ADLRPLAFLENIIAIYKGL-- 104 (691)
Q Consensus 39 ~l~CpIC~e~~~------~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~-----~~l~~n~~l~~lv~~~~~~-- 104 (691)
.+.|-||.+.|. -|..|.|||+||..|+...... ...||.||..... ..+..|+.+..++......
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~~~~~~ 82 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHMKKTTV 82 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHHhcccc
Confidence 356999999886 4889999999999999998864 6778999998533 2577788777777665221
Q ss_pred -------CCCCCccc---------ccccccc-cccccccccccCCCCCcee
Q 038256 105 -------DASPSSNL---------LQPVYSA-FGRHQEDNSSSGQSLSANT 138 (691)
Q Consensus 105 -------~~~~C~~~---------~~~~C~~-~~~iC~~C~~~~~H~~H~~ 138 (691)
.+..|..+ ...+|.. +..+|..|...+.|.+|..
T Consensus 83 ~~~~~~~~~~~c~~~~~nl~~~vc~~~~~~~~~~~~c~t~~~~~~~~~~~k 133 (296)
T KOG4185|consen 83 EEKGEADSPPKCKEHPYNLAEFVCVEPDCSSKDKLMCRTCEEFGIHKGHTK 133 (296)
T ss_pred cccCcccCCcccccCcccccceeecCCCcchhhhhhhhhccchhhhhhhHH
Confidence 11124432 1223433 3349999999999999976
No 62
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0017 Score=70.10 Aligned_cols=45 Identities=31% Similarity=0.755 Sum_probs=38.3
Q ss_pred cccccccccccCc---eecCCCCcccccccccccCC-CCCCCCCCCCcc
Q 038256 40 LKCPLCLNLFSRP---LLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCT 84 (691)
Q Consensus 40 l~CpIC~e~~~~P---v~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~ 84 (691)
.+|.||+|.|.+- +.|||.|.|=..||..|+.. ...||+|+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 4899999999853 57999999999999999965 466999988553
No 63
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=96.32 E-value=0.011 Score=48.64 Aligned_cols=37 Identities=32% Similarity=0.574 Sum_probs=33.4
Q ss_pred CCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 598 KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
++|+|+.||+.|.+....++.|+++|...||+++...
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~ 37 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSL 37 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEeccc
Confidence 4899999999996777788999999999999999866
No 64
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0021 Score=66.34 Aligned_cols=50 Identities=30% Similarity=0.740 Sum_probs=41.2
Q ss_pred ccccccccccccccccCceec-CCCCcccccccccccC--CCCCCCCCCCCcc
Q 038256 35 KLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQ--CESECPLCKSQCT 84 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~--~~~~CP~Cr~~~~ 84 (691)
......+||+|.+....|.+. +|+|.||..||..... ..+.||.|..+..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345567899999999999755 5999999999987653 4799999987764
No 65
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=95.97 E-value=0.02 Score=47.65 Aligned_cols=37 Identities=35% Similarity=0.643 Sum_probs=32.2
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
+++|+|+.||| +.+....++.|+++|+..||+|....
T Consensus 3 ~~~F~g~~f~i-~~~~~~~~~~l~~~i~~~GG~v~~~~ 39 (78)
T PF00533_consen 3 PKIFEGCTFCI-SGFDSDEREELEQLIKKHGGTVSNSF 39 (78)
T ss_dssp TTTTTTEEEEE-SSTSSSHHHHHHHHHHHTTEEEESSS
T ss_pred CCCCCCEEEEE-ccCCCCCHHHHHHHHHHcCCEEEeec
Confidence 57999999999 55788888999999999999995544
No 66
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0028 Score=67.66 Aligned_cols=47 Identities=26% Similarity=0.766 Sum_probs=40.7
Q ss_pred ccccccccccccc-c------------CceecCCCCcccccccccccCCCCCCCCCCCCc
Q 038256 37 ALELKCPLCLNLF-S------------RPLLLPCDHIFCNSCIPRSAQCESECPLCKSQC 83 (691)
Q Consensus 37 ~e~l~CpIC~e~~-~------------~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~ 83 (691)
..+-.|.||.+-+ . .|+.|||||.+-..|+..|.+..-+||.||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 3567899999874 3 258999999999999999999999999999985
No 67
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0046 Score=64.55 Aligned_cols=48 Identities=27% Similarity=0.767 Sum_probs=40.4
Q ss_pred cccccccccccccC---ceecCCCCcccccccccccCC-CCCCCCCCCCccc
Q 038256 38 LELKCPLCLNLFSR---PLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTY 85 (691)
Q Consensus 38 e~l~CpIC~e~~~~---Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~ 85 (691)
....|.||++-|.. -+.|||.|.|-..|+..|+.+ ...||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34779999998863 368899999999999999974 7889999998753
No 68
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.28 E-value=0.0073 Score=52.25 Aligned_cols=48 Identities=27% Similarity=0.679 Sum_probs=36.4
Q ss_pred ccccccccccccc-----------C-ce-ecCCCCcccccccccccCC---CCCCCCCCCCccc
Q 038256 38 LELKCPLCLNLFS-----------R-PL-LLPCDHIFCNSCIPRSAQC---ESECPLCKSQCTY 85 (691)
Q Consensus 38 e~l~CpIC~e~~~-----------~-Pv-~l~CgHsFC~~Ci~~~~~~---~~~CP~Cr~~~~~ 85 (691)
++-.|.||...|. + |+ .-.|+|.|-..||.+|+.. ...||.||.+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3556777777765 2 43 4479999999999999964 5789999987653
No 69
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.0017 Score=50.80 Aligned_cols=44 Identities=25% Similarity=0.706 Sum_probs=38.7
Q ss_pred cccccccccccCceecCCCC-cccccccccccC-CCCCCCCCCCCc
Q 038256 40 LKCPLCLNLFSRPLLLPCDH-IFCNSCIPRSAQ-CESECPLCKSQC 83 (691)
Q Consensus 40 l~CpIC~e~~~~Pv~l~CgH-sFC~~Ci~~~~~-~~~~CP~Cr~~~ 83 (691)
-.|.||.+...+.|...||| -.|..|-.+.++ ....||+||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 35999999999999999999 679999999887 478899999876
No 70
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=94.89 E-value=0.012 Score=68.20 Aligned_cols=86 Identities=24% Similarity=0.271 Sum_probs=70.6
Q ss_pred ccEEEEEcCCCH----HHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcC-CeEeehhHHHHH
Q 038256 486 KEWVFCGSALSV----EEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNG-NWVLKIDWIKAC 560 (691)
Q Consensus 486 ~~~vi~~Sgls~----~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G-~wIVs~~Wl~~c 560 (691)
+...+++||+.+ .++..+...+..+|+..+.+++..+||+|+.. .+|.|...|...+ +|||..+||..|
T Consensus 443 ~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~------~gt~k~~~a~~~~~~~Vv~~~wl~~~ 516 (635)
T KOG0323|consen 443 KGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAAN------AGTKKVYKAVVSGSAKVVNAAWLWRS 516 (635)
T ss_pred hccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhc------cCcceeeccccccceeEechhHHHHH
Confidence 344456677553 33456667788899999999999999999985 4888999998888 999999999999
Q ss_pred HHhCCCCCCCCcccccC
Q 038256 561 MEAMNPVGEEPYEINLD 577 (691)
Q Consensus 561 ~~~g~~vdEe~yei~~d 577 (691)
++....++|..|-+..+
T Consensus 517 ~e~w~~v~ek~~~l~~~ 533 (635)
T KOG0323|consen 517 LEKWGKVEEKLEPLDDD 533 (635)
T ss_pred HHHhcchhccccccccc
Confidence 99999999999987543
No 71
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.70 E-value=0.011 Score=64.78 Aligned_cols=49 Identities=29% Similarity=0.653 Sum_probs=41.2
Q ss_pred hccccccccccccccccCce----ecCCCCcccccccccccCCCCCCCCCCCCcc
Q 038256 34 QKLALELKCPLCLNLFSRPL----LLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv----~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
..+-|..+||||++-+..-+ ++.|.|+|=..|+..|+. .+||+||....
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 35667789999999998764 668999999999999974 67999998665
No 72
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=94.68 E-value=0.14 Score=55.24 Aligned_cols=73 Identities=18% Similarity=0.062 Sum_probs=53.7
Q ss_pred CCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcc---cchHHHHHHHHc-----CCeEee
Q 038256 482 PNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSC---TRTLKVLMAILN-----GNWVLK 553 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~---~RT~K~L~Aia~-----G~wIVs 553 (691)
+...+.+||+++ |..-.|+.+.+++..+||.|.++++.++|.||++....... .-+-|+-.|... |+.|++
T Consensus 220 ~l~g~~~vfTG~-l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~ 298 (309)
T PRK06195 220 AFKEEVVVFTGG-LASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLN 298 (309)
T ss_pred cccCCEEEEccc-cCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEec
Confidence 444555555543 54446899999999999999999999999999996321111 234588888777 999999
Q ss_pred hh
Q 038256 554 ID 555 (691)
Q Consensus 554 ~~ 555 (691)
.+
T Consensus 299 E~ 300 (309)
T PRK06195 299 EE 300 (309)
T ss_pred HH
Confidence 74
No 73
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.56 E-value=0.0068 Score=67.27 Aligned_cols=51 Identities=25% Similarity=0.598 Sum_probs=43.4
Q ss_pred ccccccccccccccccCceecCCCCcccccccccccC-----CCCCCCCCCCCccc
Q 038256 35 KLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ-----CESECPLCKSQCTY 85 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~-----~~~~CP~Cr~~~~~ 85 (691)
.-..+..|.+|.+.-.+++...|.|.||+.|+.++.. ...+||.|...+..
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 3345678999999999999999999999999988764 36899999987754
No 74
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=94.53 E-value=0.088 Score=62.32 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=58.5
Q ss_pred CCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHH
Q 038256 482 PNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKA 559 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~ 559 (691)
+.....+||+++ |+.--|+.+++++.++||++.++++.+++.||++...+ -|+-.|...|+.|++.+.+.+
T Consensus 593 ~l~gktfV~TG~-l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aG------sKl~KA~~LGI~Ii~e~~f~~ 663 (669)
T PRK14350 593 FLFGKKFCITGS-FNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAG------LKLKKANNLGIKIMSLFDIKS 663 (669)
T ss_pred ccCCcEEEEecc-cCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCC------chHHHHHHcCCEEecHHHHHH
Confidence 455667777665 54445889999999999999999999999999986432 389999999999999987765
No 75
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.02 Score=62.24 Aligned_cols=48 Identities=27% Similarity=0.804 Sum_probs=39.4
Q ss_pred cccccccccccccCce-----e---cCCCCcccccccccccC--C-----CCCCCCCCCCccc
Q 038256 38 LELKCPLCLNLFSRPL-----L---LPCDHIFCNSCIPRSAQ--C-----ESECPLCKSQCTY 85 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv-----~---l~CgHsFC~~Ci~~~~~--~-----~~~CP~Cr~~~~~ 85 (691)
.+..|-||++...+.. . .+|.|.||..||..|-. . ...||.||.....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3778999999988766 3 57999999999999872 2 5889999987743
No 76
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=94.05 E-value=0.13 Score=40.90 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=29.4
Q ss_pred CceEEEecCcCcccHHHHHHHHHhCCCEEEecCc
Q 038256 602 GLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEG 635 (691)
Q Consensus 602 G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~ 635 (691)
|+.|||+|......+..|+++|+.+||+|.....
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~ 34 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVS 34 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEecccc
Confidence 6789999976567789999999999999998663
No 77
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=93.81 E-value=0.25 Score=53.48 Aligned_cols=72 Identities=17% Similarity=0.005 Sum_probs=57.3
Q ss_pred CCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHH
Q 038256 484 KAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACM 561 (691)
Q Consensus 484 ~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~ 561 (691)
....+||+++ |+ ..|+.+.+.+..+|+.|.++++.+++.||++...+ .+-|...|-..|+.|++.+=+.+-+
T Consensus 234 ~g~~~v~TG~-l~-~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~----~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 234 QGMRVALSAE-VS-RTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAP----EQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred CCCEEEEecC-CC-CCHHHHHHHHHHcCCEecCccccCccEEEECCCCC----cccHHHHHHHcCCccccHHHHHHHH
Confidence 4566666554 55 47899999999999999999999999999997532 2459999999999999986555443
No 78
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.0085 Score=61.66 Aligned_cols=57 Identities=23% Similarity=0.507 Sum_probs=44.1
Q ss_pred ccccccccccccccccCce----------ecCCCCcccccccccccC--CCCCCCCCCCCccccCCCch
Q 038256 35 KLALELKCPLCLNLFSRPL----------LLPCDHIFCNSCIPRSAQ--CESECPLCKSQCTYADLRPL 91 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv----------~l~CgHsFC~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~~n 91 (691)
+=-++-.|.||..-+..-+ .|+|+|.|=..||..|-. ...+||.|++.+....+..|
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 3334567999998876443 789999999999999863 57899999998876655544
No 79
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=92.92 E-value=0.24 Score=58.94 Aligned_cols=75 Identities=16% Similarity=0.028 Sum_probs=58.3
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
.....+||+++ |..-.|+.+.+++..+||++.++++.+++.||++...+ .-|+-.|-..|+.|++.+-+.+-++
T Consensus 610 l~g~~~v~TG~-l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g-----~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 610 LDGLTFVFTGS-LSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPG-----QSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCcEEEEccC-CCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCC-----hhHHHHHHHCCCeEecHHHHHHHHH
Confidence 34455555443 43335899999999999999999999999999997532 2499999999999999977766555
Q ss_pred h
Q 038256 563 A 563 (691)
Q Consensus 563 ~ 563 (691)
.
T Consensus 684 ~ 684 (689)
T PRK14351 684 E 684 (689)
T ss_pred h
Confidence 3
No 80
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=92.57 E-value=0.84 Score=49.25 Aligned_cols=134 Identities=18% Similarity=0.123 Sum_probs=74.1
Q ss_pred ccchHHHHHHHHcCCeEeehhHHHHHHHhC-CCCCCCCcccccCCCCC--CCCchhhhh---hhhccCCCCCCCceEEEe
Q 038256 535 CTRTLKVLMAILNGNWVLKIDWIKACMEAM-NPVGEEPYEINLDNHGC--EEGPKTGRL---RALNKAPKLFDGLSFYFS 608 (691)
Q Consensus 535 ~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g-~~vdEe~yei~~d~~~~--~~gp~~~R~---~~~~~~~~LF~G~~f~l~ 608 (691)
+.-|.+++.+++.-.-+-+..+|.+.+.-- ..+....|-........ ...+..... .........|.|..|+|+
T Consensus 150 A~ata~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~vfT 229 (309)
T PRK06195 150 AMACSNILLNISKELNSKDINEISKLLGVTLGYVNENGYKPSSRKGRILKRSNRQAPRKKKKIIESFGFTAFKEEVVVFT 229 (309)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHhCCccccccccCCCcccccccccccCCCCCCcccccccccCCCccccCCEEEEc
Confidence 456788888887766566666666654311 12223333321000000 000000000 000112246999999999
Q ss_pred cCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeCCCCCCCCcccchhhHHhhHHHHHHHHH
Q 038256 609 GNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLDFPEGSLIGEEVSTIWNRLNEAEELAS 684 (691)
Q Consensus 609 g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~ 684 (691)
|.+....|++++++|+..||+|.++- +.++.|+|+-.......... -.-.+++.|++|..
T Consensus 230 G~l~~~~R~~~~~~~~~~Gg~v~~sV------------s~~t~~lV~G~~~~~~~~~~----~~~~K~~kA~~l~~ 289 (309)
T PRK06195 230 GGLASMTRDEAMILVRRLGGTVGSSV------------TKKTTYLVTNTKDIEDLNRE----EMSNKLKKAIDLKK 289 (309)
T ss_pred cccCCCCHHHHHHHHHHhCCEecCCc------------ccCceEEEECCCcchhhccc----CcChHHHHHHHHHh
Confidence 99988889999999999999999875 33566777764332211111 11134667777755
No 81
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.046 Score=59.46 Aligned_cols=58 Identities=31% Similarity=0.756 Sum_probs=46.4
Q ss_pred cccccccccccccCc-----eecCCCCcccccccccccCC--CCCCCCCCCCccccCCCchHHHH
Q 038256 38 LELKCPLCLNLFSRP-----LLLPCDHIFCNSCIPRSAQC--ESECPLCKSQCTYADLRPLAFLE 95 (691)
Q Consensus 38 e~l~CpIC~e~~~~P-----v~l~CgHsFC~~Ci~~~~~~--~~~CP~Cr~~~~~~~l~~n~~l~ 95 (691)
...+||||++-+.-| +.+.|||-|-..||++|+-. ...||.|.-....+.+++-..++
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALR 67 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHH
Confidence 346899999999866 47789999999999999842 67899998887777776655443
No 82
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=92.51 E-value=0.2 Score=59.43 Aligned_cols=67 Identities=21% Similarity=0.104 Sum_probs=53.4
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhH
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDW 556 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~W 556 (691)
...+.+||+++ |..-.|+.+.++++.+||+|.++++.+++.||++...+ -|+-.|...|+.|++.+.
T Consensus 585 l~gk~~v~TG~-l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~g------sKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 585 LAGKTFVLTGT-LSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAG------SKLAKAQELGIPIINEEE 651 (652)
T ss_pred ccCcEEEEecc-CCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCC------hHHHHHHHcCCcEechhh
Confidence 44556666554 44335889999999999999999999999999996522 299999999999998753
No 83
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.037 Score=58.96 Aligned_cols=48 Identities=25% Similarity=0.617 Sum_probs=42.3
Q ss_pred ccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcc
Q 038256 37 ALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
.|+-.||||.--....|..||+|.-|..||.+.+.+...|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 356679999998889999999999999999999999999999976553
No 84
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=92.39 E-value=0.3 Score=58.04 Aligned_cols=73 Identities=21% Similarity=0.063 Sum_probs=57.4
Q ss_pred CCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHh
Q 038256 484 KAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEA 563 (691)
Q Consensus 484 ~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~ 563 (691)
....+||+++ |+.-.|+.+.+++..+||.|.++++.+++.||++...+ -|+-.|...|+.|++.+-+.+-++.
T Consensus 592 ~g~~~v~TG~-l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~g------sK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 592 AGKTVVLTGT-LEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAG------SKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred cccEEEEeCC-CCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCC------hHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 3445555443 33335889999999999999999999999999997532 4999999999999999877766543
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.33 E-value=0.11 Score=41.31 Aligned_cols=48 Identities=27% Similarity=0.796 Sum_probs=38.1
Q ss_pred ccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcccc
Q 038256 37 ALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYA 86 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~ 86 (691)
..+..|-.|...-...+.++|||..|..|..- .....||.|..++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence 34556778888888899999999999999753 3467899999888654
No 86
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.062 Score=57.84 Aligned_cols=48 Identities=25% Similarity=0.728 Sum_probs=40.0
Q ss_pred ccccccccccccccCceecCCCC-cccccccccccCCCCCCCCCCCCcc
Q 038256 37 ALELKCPLCLNLFSRPLLLPCDH-IFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~CgH-sFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
+..-.|-||+.-.++-+.|||.| -.|..|...+.-....||+||.++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 33567999999999999999999 5699998776544677999999874
No 88
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=91.50 E-value=0.056 Score=58.45 Aligned_cols=46 Identities=24% Similarity=0.694 Sum_probs=39.8
Q ss_pred ccccccccccCceecCCCCcccccccccccC--CCCCCCCCCCCcccc
Q 038256 41 KCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ--CESECPLCKSQCTYA 86 (691)
Q Consensus 41 ~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 86 (691)
.|-||-+-=++=.+-||||..|..|+..|.. ++-.||.||..+...
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 4899999888888889999999999999973 378999999988543
No 89
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.045 Score=57.10 Aligned_cols=44 Identities=32% Similarity=0.828 Sum_probs=35.6
Q ss_pred cccccccccccccccCceecCCCC-cccccccccccCCCCCCCCCCCCc
Q 038256 36 LALELKCPLCLNLFSRPLLLPCDH-IFCNSCIPRSAQCESECPLCKSQC 83 (691)
Q Consensus 36 l~e~l~CpIC~e~~~~Pv~l~CgH-sFC~~Ci~~~~~~~~~CP~Cr~~~ 83 (691)
+.....|.||++...+-+.|+||| .-|..|-.+. ..||+||+.+
T Consensus 297 ~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 297 LATRRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred hhHHHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHH
Confidence 334667999999999999999999 4588887654 3799998754
No 90
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=0.1 Score=53.32 Aligned_cols=52 Identities=15% Similarity=0.377 Sum_probs=45.6
Q ss_pred cccccccccccccCc----eecCCCCcccccccccccCCCCCCCCCCCCccccCCC
Q 038256 38 LELKCPLCLNLFSRP----LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLR 89 (691)
Q Consensus 38 e~l~CpIC~e~~~~P----v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 89 (691)
..+.||||.+.+.+. ++-+|||.||..|.+++......||+|..++..+++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 568899999999985 3558999999999999999999999999999877653
No 91
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=0.11 Score=54.48 Aligned_cols=50 Identities=28% Similarity=0.703 Sum_probs=39.6
Q ss_pred cccccc-ccccCce----ecCCCCcccccccccccC-CCCCCCCCCCCccccCCCc
Q 038256 41 KCPLCL-NLFSRPL----LLPCDHIFCNSCIPRSAQ-CESECPLCKSQCTYADLRP 90 (691)
Q Consensus 41 ~CpIC~-e~~~~Pv----~l~CgHsFC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~ 90 (691)
.||+|. +.|.+|- .-+|+|+.|.+|..+.+. +...||.|-..+...+++.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccch
Confidence 499998 5577772 238999999999998874 6889999998887766554
No 92
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=90.81 E-value=0.37 Score=54.20 Aligned_cols=77 Identities=17% Similarity=0.074 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCHHHHHHHHHHHhhcCccEeec----------cCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehh
Q 038256 486 KEWVFCGSALSVEEKLLLVRFGNMIGVPVSKF----------WKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKID 555 (691)
Q Consensus 486 ~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~----------~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~ 555 (691)
++++|..+.=-+ ++.|.=+|..+||.|.-+ -...+||=|+..+.. +.+ ..|.--|-|+
T Consensus 329 ~glkFfl~reVP--resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~-----~~~-----v~gR~YvQPQ 396 (570)
T KOG2481|consen 329 SGLKFFLNREVP--RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQ-----QTS-----VIGRTYVQPQ 396 (570)
T ss_pred hcceeeeeccCc--hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCc-----cce-----eeeeeeecch
Confidence 566666666555 678888999999998765 123589999987522 122 2466678999
Q ss_pred HHHHHHHhCCCCCCCCccc
Q 038256 556 WIKACMEAMNPVGEEPYEI 574 (691)
Q Consensus 556 Wl~~c~~~g~~vdEe~yei 574 (691)
||.||+.++.+++-+.|.+
T Consensus 397 WvfDsvNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 397 WVFDSVNARLLLPTEKYFP 415 (570)
T ss_pred hhhhhccchhhccHhhhCC
Confidence 9999999999999999987
No 93
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.33 E-value=0.046 Score=63.49 Aligned_cols=47 Identities=28% Similarity=0.679 Sum_probs=39.1
Q ss_pred ccccccccccccCce---ecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 39 ELKCPLCLNLFSRPL---LLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv---~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
.-.||+|+.-+.+-. -.+|+|.||..||..|-+..-+||+||..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 346999998887653 34799999999999999889999999988754
No 94
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=90.30 E-value=0.62 Score=54.52 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=58.1
Q ss_pred CCCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHH
Q 038256 481 SPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKA 559 (691)
Q Consensus 481 s~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~ 559 (691)
+....+.+||++| |+.--|+.+++.+..+||+|+.+++.+++-||++.+.+. |+-.|...|..|++.+++.+
T Consensus 593 ~~l~gkt~V~TGt-L~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGS------Kl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGT-LEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGS------KLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEecc-CCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCCh------HHHHHHHcCCeEecHHHHHH
Confidence 4555667766554 443346778888899999999999999999999986544 99999999999999988765
No 95
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=0.1 Score=59.64 Aligned_cols=41 Identities=41% Similarity=0.960 Sum_probs=33.1
Q ss_pred cccccccccccccccc----CceecCCCCcccccccccccCCCCCCC
Q 038256 35 KLALELKCPLCLNLFS----RPLLLPCDHIFCNSCIPRSAQCESECP 77 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~----~Pv~l~CgHsFC~~Ci~~~~~~~~~CP 77 (691)
.+.+.+.|+||+..|. .||.+-|||+.|+.|++..... +||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA--SCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc--cCC
Confidence 4556678999988874 6999999999999999876543 455
No 96
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=89.32 E-value=0.53 Score=51.26 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCHHHHHHHHHHHhhcCccEee-----------ccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeeh
Q 038256 486 KEWVFCGSALSVEEKLLLVRFGNMIGVPVSK-----------FWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKI 554 (691)
Q Consensus 486 ~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~-----------~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~ 554 (691)
..++|..|.--+ ...|.=+|...||.|.. ++...+||-|+..+ .|.--..|..-|.|
T Consensus 352 S~f~FyisreVp--~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp----------~~~~kvegrtYiQP 419 (591)
T COG5163 352 SGFKFYISREVP--GDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRP----------VMKNKVEGRTYIQP 419 (591)
T ss_pred hceEEEEecccc--chHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccch----------hhhhhhcceeeech
Confidence 466677666544 46777788889988864 45667999999853 34444588899999
Q ss_pred hHHHHHHHhCCCCCCCCccc
Q 038256 555 DWIKACMEAMNPVGEEPYEI 574 (691)
Q Consensus 555 ~Wl~~c~~~g~~vdEe~yei 574 (691)
+||.||+..|.++.-+.|-+
T Consensus 420 Qw~fDsiNkG~l~~~~~Y~~ 439 (591)
T COG5163 420 QWLFDSINKGKLACVENYCV 439 (591)
T ss_pred HHHHhhhccccchhhhhccc
Confidence 99999999999999999976
No 97
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=88.06 E-value=0.83 Score=49.46 Aligned_cols=49 Identities=24% Similarity=0.238 Sum_probs=40.2
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeCC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLD 658 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~~ 658 (691)
..||.|.+|+|+|.+. .++++++++|+..||+|..+- +.++.|+|+...
T Consensus 230 ~~l~~g~~~v~TG~l~-~~R~e~~~~~~~~G~~v~~sV------------s~~t~~lv~g~~ 278 (313)
T PRK06063 230 RPLVQGMRVALSAEVS-RTHEELVERILHAGLAYSDSV------------DRDTSLVVCNDP 278 (313)
T ss_pred CcccCCCEEEEecCCC-CCHHHHHHHHHHcCCEecCcc------------ccCccEEEECCC
Confidence 3589999999999987 578999999999999999875 334567777643
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.87 E-value=0.39 Score=51.51 Aligned_cols=62 Identities=24% Similarity=0.517 Sum_probs=47.7
Q ss_pred cccccccccccccccCce-ecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhc
Q 038256 36 LALELKCPLCLNLFSRPL-LLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 36 l~e~l~CpIC~e~~~~Pv-~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
.-+.|.||||.+.+..|+ .-+=||.-|..|-.+ -...||.||.++. + ..++.++.+++....
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g--~-~R~~amEkV~e~~~v 107 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIG--N-IRCRAMEKVAEAVLV 107 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCccccccc--c-HHHHHHHHHHHhcee
Confidence 345678999999999985 455689999999864 3568999999886 3 366778888776644
No 99
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.79 E-value=0.12 Score=43.24 Aligned_cols=46 Identities=28% Similarity=0.636 Sum_probs=22.3
Q ss_pred cccccccccccc-C---ceec----CCCCcccccccccccCC-----------CCCCCCCCCCcc
Q 038256 39 ELKCPLCLNLFS-R---PLLL----PCDHIFCNSCIPRSAQC-----------ESECPLCKSQCT 84 (691)
Q Consensus 39 ~l~CpIC~e~~~-~---Pv~l----~CgHsFC~~Ci~~~~~~-----------~~~CP~Cr~~~~ 84 (691)
++.|+||..++. + |... .|+..|=..||.+|+.. ...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999998765 2 3322 68999999999999741 135999998775
No 100
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.31 E-value=0.21 Score=59.19 Aligned_cols=51 Identities=27% Similarity=0.717 Sum_probs=41.4
Q ss_pred hccccccccccccccccCceecCCCCcccccccccccCC--CCCCCCCCCCccc
Q 038256 34 QKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC--ESECPLCKSQCTY 85 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~--~~~CP~Cr~~~~~ 85 (691)
..+.....|++|.+ ...++..+|+|.||..|+...+.. ...||.||..+..
T Consensus 449 ~~l~~~~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 449 VDLSVSHWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred HHHhhccccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 34443489999999 888999999999999999998863 4579999876644
No 101
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.14 E-value=0.25 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.842 Sum_probs=18.2
Q ss_pred cccccccccccccCceecCCC
Q 038256 38 LELKCPLCLNLFSRPLLLPCD 58 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l~Cg 58 (691)
|+.+||||++...+.|+|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999999654
No 102
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=86.11 E-value=0.29 Score=37.93 Aligned_cols=42 Identities=24% Similarity=0.648 Sum_probs=21.0
Q ss_pred cccccccccC--ceec--CCCCcccccccccccC-CCCCCCCCCCCc
Q 038256 42 CPLCLNLFSR--PLLL--PCDHIFCNSCIPRSAQ-CESECPLCKSQC 83 (691)
Q Consensus 42 CpIC~e~~~~--Pv~l--~CgHsFC~~Ci~~~~~-~~~~CP~Cr~~~ 83 (691)
||+|.+.+.. --.+ +|+..+|+.|..+... ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888887732 1233 5889999999988875 588999999875
No 103
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=0.21 Score=55.59 Aligned_cols=49 Identities=24% Similarity=0.688 Sum_probs=38.5
Q ss_pred ccccccccccccccc-----------------CceecCCCCcccccccccccCC-CCCCCCCCCCcc
Q 038256 36 LALELKCPLCLNLFS-----------------RPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCT 84 (691)
Q Consensus 36 l~e~l~CpIC~e~~~-----------------~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~ 84 (691)
++...-|+||..... +-+.+||.|.|-..|+.+|..+ +..||+||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 445567999986542 2345699999999999999985 569999999874
No 104
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=85.04 E-value=1.1 Score=53.44 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=40.5
Q ss_pred CCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEe
Q 038256 598 KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYN 656 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~ 656 (691)
..|.|.+|+|+|.+...+|++++++|+..||+|..+- +.+..|+|+-
T Consensus 592 ~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssV------------Skktd~LV~G 638 (669)
T PRK14350 592 SFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCV------------TKYLDFLLVG 638 (669)
T ss_pred CccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccc------------cCCCcEEEEC
Confidence 3699999999999988889999999999999999975 3456688875
No 105
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.82 E-value=0.45 Score=48.88 Aligned_cols=45 Identities=33% Similarity=0.930 Sum_probs=32.1
Q ss_pred cccccccccc-cCce-ecCCCCcccccccccccCCCCCCCCCCCCcccc
Q 038256 40 LKCPLCLNLF-SRPL-LLPCDHIFCNSCIPRSAQCESECPLCKSQCTYA 86 (691)
Q Consensus 40 l~CpIC~e~~-~~Pv-~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~ 86 (691)
.-|-.|...- .+|. ++.|+|.||..|...... ..||+|++++...
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccceeeee
Confidence 3466666543 3454 668999999999875433 3899999987553
No 106
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=83.46 E-value=0.23 Score=54.92 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=69.9
Q ss_pred cCCCCeEEEccccccCCCc--E--E-------cCCcccCHHH-HHHhccccccCcCCCCCceec----cC-ccCccccee
Q 038256 360 DRSHVIHVHSKCIEWAPQV--Y--Y-------AGDTVKNLKA-ELARGSKLKCSRCGLKGAALG----CY-VRSCRRSYH 422 (691)
Q Consensus 360 ~~~~~~wvH~~CalWsp~v--~--~-------~~~~l~~l~~-~~~r~~~l~C~~C~~~GA~I~----C~-~~~C~~~fH 422 (691)
......++|..|++|.-.- . . .++.+..++. ...+...+.|..|..+||... |. ...|.++||
T Consensus 142 ~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~c~~~~a~ts~~~~~~~~~~c~~~~e 221 (375)
T KOG1084|consen 142 DEYPSFEARMGCILIQNSRNGPAPEARLLCFSKSFLIESHEKVEDKCSEALNCKLCHEPGAPTSQFDPCDIDDDCNRSRE 221 (375)
T ss_pred chhhhhhhccchhHHhhccCCCCcccccchhhhhhhHHhhhhhhhhcccccccccccCCCCcccccCCcchhhhhhhhhh
Confidence 3456789999999998552 1 1 1346777777 888888999999999999997 88 788999999
Q ss_pred cccccccCccc-cc---cCCceEeccccCCCCC
Q 038256 423 VPCALEISECR-WD---TENFLVLCPVHSSVKF 451 (691)
Q Consensus 423 ~~CA~~~~g~~-~~---~~~~~~~C~~H~~~~~ 451 (691)
+.||+.. +.. -| ...+..||..|++.-.
T Consensus 222 ~~~~l~~-~~~~~d~~~~~~~h~~c~~~~~~~~ 253 (375)
T KOG1084|consen 222 FFCALSP-KATIPDIGFELWYHRYCALWAPNVH 253 (375)
T ss_pred hhhhhcC-CCcCCccchhHHHHHHHHhcCCcce
Confidence 9999986 332 22 1456789999998544
No 107
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.38 E-value=0.37 Score=52.67 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=39.7
Q ss_pred cccccccccccccccc---CceecCCCCcccccccccccCC---CCCCCCCCCCccc
Q 038256 35 KLALELKCPLCLNLFS---RPLLLPCDHIFCNSCIPRSAQC---ESECPLCKSQCTY 85 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~---~Pv~l~CgHsFC~~Ci~~~~~~---~~~CP~Cr~~~~~ 85 (691)
.+..-|.|||=.+.-. .|+.|.|||..|+.-|.+..++ .+.||.|-.....
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~ 386 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLA 386 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCH
Confidence 3556688999776654 3799999999999999988764 4899999665543
No 108
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.25 E-value=0.5 Score=51.15 Aligned_cols=48 Identities=27% Similarity=0.762 Sum_probs=35.8
Q ss_pred hccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcc
Q 038256 34 QKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
..+.....|-||++-..+.+.+||||.-| |..-. +....||+||..+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 34445567999999999999999999866 65432 23455999997653
No 109
>PF04641 Rtf2: Rtf2 RING-finger
Probab=82.82 E-value=0.58 Score=49.24 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=41.5
Q ss_pred cccccccccccccccC---ce-ecCCCCcccccccccccCCCCCCCCCCCCccccCC
Q 038256 36 LALELKCPLCLNLFSR---PL-LLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADL 88 (691)
Q Consensus 36 l~e~l~CpIC~e~~~~---Pv-~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 88 (691)
-...+.|||....|.. -| +.+|||.|+..+|...- ....||+|-.++...++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 4667899999999853 23 44999999999999874 45679999999987653
No 110
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=82.60 E-value=0.67 Score=53.88 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
..+..|++-||..+|...+.......||.+..+ .+.+||||++.+ ++.-.-.+......||..+|.--++..|
T Consensus 211 feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~~-d~~cthvvv~e~------~~~~~p~~~s~~~~~vk~ewfw~siq~g 283 (850)
T KOG3524|consen 211 FEGLSLFFHGFKQEEIDDMLRSLENTGGKLAPS-DTLCTHVVVNED------NDEVEPLAVSSNQVHVKKEWFWVSIQRG 283 (850)
T ss_pred ccCCeEeecCCcHHHHHHHHHHHHhcCCcccCC-CCCceeEeecCC------ccccccccccccceeecccceEEEEecc
Confidence 456678999999999999999999999999985 678999999975 4445556777888999999999999999
Q ss_pred CCCCCCCccc
Q 038256 565 NPVGEEPYEI 574 (691)
Q Consensus 565 ~~vdEe~yei 574 (691)
.|.-|..|..
T Consensus 284 ~~a~e~~yl~ 293 (850)
T KOG3524|consen 284 CCAIEDNYLL 293 (850)
T ss_pred hhccccceec
Confidence 9999998876
No 111
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.29 E-value=0.39 Score=44.88 Aligned_cols=49 Identities=22% Similarity=0.566 Sum_probs=41.9
Q ss_pred cccccccccccccCceecC----CCCcccccccccccCC---CCCCCCCCCCcccc
Q 038256 38 LELKCPLCLNLFSRPLLLP----CDHIFCNSCIPRSAQC---ESECPLCKSQCTYA 86 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l~----CgHsFC~~Ci~~~~~~---~~~CP~Cr~~~~~~ 86 (691)
.-..|-||.|...|...|. ||-+.|..|-..+|+. ...||.|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4467999999999988773 9999999999999974 68899999888653
No 112
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=81.72 E-value=1.9 Score=50.60 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=45.5
Q ss_pred CCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeCCCCCCCC
Q 038256 598 KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLDFPEGSL 664 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~~~p~~~~ 664 (691)
..|.|.+|+|+|.+...+|++...+|++.||+|..+- +.++.|+|+-.++=.+..
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SV------------SkktD~vvaG~~aGSKl~ 647 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSV------------SKKTDYVVAGENAGSKLA 647 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEecee------------cccccEEEEcCCCChHHH
Confidence 5799999999999999999999999999999999875 445678888765544444
No 113
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=0.53 Score=51.16 Aligned_cols=48 Identities=21% Similarity=0.628 Sum_probs=34.8
Q ss_pred ccccccccccCce----ecCCCCcccccccccccCC--C-CCCCCCCCCccccCC
Q 038256 41 KCPLCLNLFSRPL----LLPCDHIFCNSCIPRSAQC--E-SECPLCKSQCTYADL 88 (691)
Q Consensus 41 ~CpIC~e~~~~Pv----~l~CgHsFC~~Ci~~~~~~--~-~~CP~Cr~~~~~~~l 88 (691)
.|.||.+.+-.-- +-.|||+|=..|+..|+.. . ..||.|+..+..+.+
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 5999966654321 2249999999999999975 2 479999965555443
No 114
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=80.56 E-value=0.47 Score=50.58 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=39.6
Q ss_pred cccccccccccccCceecC-CCCcccccccccccCCCCCCCCCCCCcc
Q 038256 38 LELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l~-CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
+.-.||||+.--.+|..+. -|-.||..|+.....+...||+-..+..
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 4456999999999997666 5999999999999998899998666553
No 115
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=80.54 E-value=0.63 Score=39.66 Aligned_cols=30 Identities=30% Similarity=0.659 Sum_probs=27.4
Q ss_pred CCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 56 PCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 56 ~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
-|.|.|=..||.+|+.....||++|+....
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 599999999999999999999999987754
No 116
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=79.64 E-value=0.89 Score=32.82 Aligned_cols=28 Identities=11% Similarity=-0.172 Sum_probs=23.2
Q ss_pred ccccccccccc-ccccccccCCCCCceeee
Q 038256 112 LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 112 ~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
.+.+||.++.. +|..|...+ |++|...+
T Consensus 10 ~~~~fC~~~~~~iC~~C~~~~-H~~H~~~~ 38 (39)
T cd00021 10 PLSLFCETDRALLCVDCDLSV-HSGHRRVP 38 (39)
T ss_pred ceEEEeCccChhhhhhcChhh-cCCCCEee
Confidence 56789999887 999998776 99998743
No 117
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.61 E-value=0.99 Score=49.60 Aligned_cols=45 Identities=29% Similarity=0.622 Sum_probs=33.7
Q ss_pred ccccccccccccccC---ceecCCCCcccccccccccC-----C---CCCCCCCCC
Q 038256 37 ALELKCPLCLNLFSR---PLLLPCDHIFCNSCIPRSAQ-----C---ESECPLCKS 81 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~---Pv~l~CgHsFC~~Ci~~~~~-----~---~~~CP~Cr~ 81 (691)
...+.|.||.+-..- =+.+||+|.||+.|+..+.. + ...||.+..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 445779999988753 35889999999999988763 2 466776543
No 118
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=78.56 E-value=0.86 Score=35.45 Aligned_cols=40 Identities=28% Similarity=0.729 Sum_probs=31.1
Q ss_pred ccccccc--cccCceecCCC-----CcccccccccccC--CCCCCCCCC
Q 038256 41 KCPLCLN--LFSRPLLLPCD-----HIFCNSCIPRSAQ--CESECPLCK 80 (691)
Q Consensus 41 ~CpIC~e--~~~~Pv~l~Cg-----HsFC~~Ci~~~~~--~~~~CP~Cr 80 (691)
.|-||++ .-.+|...||. |.+=..||.+|+. ....||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 34567888985 6688899999985 356899984
No 119
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.25 E-value=0.69 Score=49.48 Aligned_cols=51 Identities=24% Similarity=0.684 Sum_probs=42.2
Q ss_pred hccccccccccccccccCceecCCCCcccccccccccC--CCCCCCCCCCCcc
Q 038256 34 QKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ--CESECPLCKSQCT 84 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~--~~~~CP~Cr~~~~ 84 (691)
+.-|++..|-||-+-++--..+||+|..|.-|..+... ....||.||....
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 34567788999999998888999999999999877543 5788999997653
No 120
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=77.59 E-value=3.7 Score=48.96 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=39.6
Q ss_pred CCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEe
Q 038256 599 LFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYN 656 (691)
Q Consensus 599 LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~ 656 (691)
.|.|.+|+|+|.+...+|++++++|+..||+|..+- +.+..|+|+-
T Consensus 584 ~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sV------------s~kt~~lv~G 629 (652)
T TIGR00575 584 PLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSV------------SKKTDYVIAG 629 (652)
T ss_pred CccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCc------------CCCccEEEEC
Confidence 599999999999888889999999999999999875 3345677775
No 121
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=76.85 E-value=4.2 Score=48.68 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=40.4
Q ss_pred CCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeC
Q 038256 598 KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNL 657 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~ 657 (691)
..|.|.+|+|+|.+...+|++++++|+..||+|..+- +.+..|+|+-.
T Consensus 608 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sV------------s~kt~~Lv~G~ 655 (689)
T PRK14351 608 DALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSV------------SGNTDYLVVGE 655 (689)
T ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCc------------CCCccEEEEcC
Confidence 3699999999999988889999999999999999875 33556777753
No 122
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=74.93 E-value=5.2 Score=47.77 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=39.8
Q ss_pred CCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeC
Q 038256 599 LFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNL 657 (691)
Q Consensus 599 LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~ 657 (691)
.|.|.+|+|+|.+...++++++++|+..||+|..+- +.++.|+|+-.
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sV------------s~kt~~lv~G~ 636 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSV------------SKKTDLVVAGE 636 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcc------------cCCCCEEEECC
Confidence 399999999999887789999999999999999875 33566777764
No 123
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=74.40 E-value=1.3 Score=46.74 Aligned_cols=43 Identities=26% Similarity=0.714 Sum_probs=35.7
Q ss_pred cccccccccccc----CceecCCCCcccccccccccCCCCCCCCCCC
Q 038256 39 ELKCPLCLNLFS----RPLLLPCDHIFCNSCIPRSAQCESECPLCKS 81 (691)
Q Consensus 39 ~l~CpIC~e~~~----~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~ 81 (691)
+..||||.+.+. .|..++|||..=..|+.......++||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 355999998865 5678999998888898888766699999977
No 124
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=74.31 E-value=2.6 Score=32.46 Aligned_cols=29 Identities=38% Similarity=0.825 Sum_probs=24.5
Q ss_pred ccCcCCCC---CceeccCccCcccceeccccccc
Q 038256 399 KCSRCGLK---GAALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 399 ~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~~ 429 (691)
.|.+|++. +-.|.|. .|.+.||..|..-.
T Consensus 1 ~C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD--SCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS--TTSCEEETTTSTSS
T ss_pred eCcCCCCcCCCCCeEEcC--CCChhhCcccCCCC
Confidence 48889994 7779997 69999999999765
No 125
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=73.99 E-value=4.5 Score=32.52 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=24.6
Q ss_pred ceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 603 LSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 603 ~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
+.|+++| |.+..++.|.++|+..||++...+
T Consensus 1 ~~i~~sg-~~~~~~~~l~~~i~~~Gg~~~~~l 31 (63)
T PF12738_consen 1 VVICFSG-FSGKERSQLRKLIEALGGKYSKDL 31 (63)
T ss_dssp -EEEEEE-B-TTTCCHHHHHHHCTT-EEESSS
T ss_pred CEEEECC-CCHHHHHHHHHHHHHCCCEEeccc
Confidence 3678888 677667899999999999999987
No 126
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.54 E-value=0.71 Score=55.16 Aligned_cols=49 Identities=27% Similarity=0.701 Sum_probs=37.6
Q ss_pred ccccccccccccccc--C---c--eecCCCCcccccccccccC--CCCCCCCCCCCcc
Q 038256 36 LALELKCPLCLNLFS--R---P--LLLPCDHIFCNSCIPRSAQ--CESECPLCKSQCT 84 (691)
Q Consensus 36 l~e~l~CpIC~e~~~--~---P--v~l~CgHsFC~~Ci~~~~~--~~~~CP~Cr~~~~ 84 (691)
++..-.|+||..++. + | ..-.|.|-|-..|+..|++ +..+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344456999999886 1 2 1225999999999999996 4789999997664
No 127
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=70.98 E-value=7.9 Score=46.16 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhcCccEeec------cCCCceEEEecC-CCCC-cccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCCCC
Q 038256 499 EKLLLVRFGNMIGVPVSKF------WKPNVTHVIAAT-DAKG-SCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEE 570 (691)
Q Consensus 499 ek~~l~~~~~~lG~~v~~~------~~~~vTHlI~~~-~~~~-~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe 570 (691)
+...+.=.++.+|+.++.. ....+||+|+.. +++. ...-+.|...-+- +.||.++||++|+..+.+++|+
T Consensus 801 e~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~--rkv~~~~wv~~s~~~~~~~~e~ 878 (881)
T KOG0966|consen 801 EEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIK--RKVVAPSWVDHSINENCLLPEE 878 (881)
T ss_pred HHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhccc--ccccCHHHHHHhhcccccCccc
Confidence 4445555677779988763 334579999982 2211 1112222222222 2899999999999999999999
Q ss_pred Cc
Q 038256 571 PY 572 (691)
Q Consensus 571 ~y 572 (691)
.|
T Consensus 879 ~~ 880 (881)
T KOG0966|consen 879 DF 880 (881)
T ss_pred cC
Confidence 98
No 128
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=70.25 E-value=1.8 Score=32.00 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=22.8
Q ss_pred cccccccccc-ccccccccCCCCCceeee
Q 038256 113 LQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 113 ~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
..+||.++.. +|..|...+ |++|.+.+
T Consensus 14 ~~~~C~~C~~~~C~~C~~~~-H~~H~~~~ 41 (42)
T PF00643_consen 14 LSLFCEDCNEPLCSECTVSG-HKGHKIVP 41 (42)
T ss_dssp EEEEETTTTEEEEHHHHHTS-TTTSEEEE
T ss_pred eEEEecCCCCccCccCCCCC-CCCCEEeE
Confidence 6789999888 999997766 99998754
No 129
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=70.04 E-value=3 Score=45.67 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=29.4
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..||+|+.||+...+. .+.|+-||.++||.|+...
T Consensus 348 ~slFS~f~FyisreVp---~dsLefiilscGG~V~~~p 382 (591)
T COG5163 348 KSLFSGFKFYISREVP---GDSLEFIILSCGGSVVGSP 382 (591)
T ss_pred hhhhhceEEEEecccc---chHHHHHHHHcCCcccCch
Confidence 4699999999997533 4579999999999999865
No 130
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=70.01 E-value=1.4 Score=47.06 Aligned_cols=51 Identities=24% Similarity=0.654 Sum_probs=36.7
Q ss_pred ccccccccccccccC----ceecCCCCcccccccccccCC-CCCCCCCCCCccccCC
Q 038256 37 ALELKCPLCLNLFSR----PLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADL 88 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~----Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 88 (691)
|++. ||+|.+.+.. =.-.+||-..|+.|.....++ ..+||.||..+...++
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 3444 9999998752 234478989999998665443 6789999998876543
No 131
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=69.18 E-value=1 Score=34.66 Aligned_cols=36 Identities=22% Similarity=0.638 Sum_probs=24.2
Q ss_pred cCceecCCC-CcccccccccccCCCCCCCCCCCCccc
Q 038256 50 SRPLLLPCD-HIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 50 ~~Pv~l~Cg-HsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
.+--.+.|. |..|..|+...+..+..||+|..+++.
T Consensus 11 ~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 11 ANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp --SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 333456777 888999999999999999999887743
No 132
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=68.58 E-value=3.5 Score=46.68 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=30.8
Q ss_pred CCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 596 APKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 596 ~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..+||+|+.|||... .+++.|+-||.++||.|.-..
T Consensus 324 ~kslF~glkFfl~re---VPresL~fiI~s~GG~V~wd~ 359 (570)
T KOG2481|consen 324 HKSLFSGLKFFLNRE---VPRESLEFIIRSFGGKVSWDP 359 (570)
T ss_pred HHHHhhcceeeeecc---CchHHHHHHHHHcCCceecCc
Confidence 457999999999864 347899999999999999875
No 133
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=67.85 E-value=3 Score=37.05 Aligned_cols=34 Identities=29% Similarity=0.750 Sum_probs=27.8
Q ss_pred ccccccccccccccccCce--ecCCCCccccccccc
Q 038256 35 KLALELKCPLCLNLFSRPL--LLPCDHIFCNSCIPR 68 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv--~l~CgHsFC~~Ci~~ 68 (691)
.+.+.-.|++|...+.+.+ ..||||.|...|+.+
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 4566778999999998764 669999999999864
No 134
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=66.07 E-value=2.6 Score=32.96 Aligned_cols=43 Identities=26% Similarity=0.636 Sum_probs=21.6
Q ss_pred ccccccccccccCce-ecCCCCccccccccccc-----CCCCCCCCCCCC
Q 038256 39 ELKCPLCLNLFSRPL-LLPCDHIFCNSCIPRSA-----QCESECPLCKSQ 82 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv-~l~CgHsFC~~Ci~~~~-----~~~~~CP~Cr~~ 82 (691)
.|.|||....+..|+ ...|.|.-|-+= ..++ .....||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 378999999999998 567999877532 2222 246889999763
No 135
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=65.97 E-value=2.5 Score=52.24 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=48.8
Q ss_pred CCCCeEEEccccccCCCcEEcC----CcccCHHHHHHhccccccCcCCCCCceeccCccCcccceecccccccCccc
Q 038256 361 RSHVIHVHSKCIEWAPQVYYAG----DTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECR 433 (691)
Q Consensus 361 ~~~~~wvH~~CalWsp~v~~~~----~~l~~l~~~~~r~~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~ 433 (691)
.+...|+|.-||.|-|++.+.. .+..++..........+|.+ .|-+.+|+. |-..||..||..+ ++.
T Consensus 643 ~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~a~~~-~~~ 713 (1005)
T KOG1080|consen 643 TDEGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI---HGSCRQCCK--CETGSHAMCASRA-GYI 713 (1005)
T ss_pred CCccchhhhhchhccccccCCCccCCCCcccccccCccchhhhccc---cccccccch--hhhcceehhhcCc-cCh
Confidence 3477999999999999999864 35566665555555556655 677777764 7788888888876 554
No 136
>COG5275 BRCT domain type II [General function prediction only]
Probab=65.95 E-value=24 Score=35.96 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=40.8
Q ss_pred CCCCccEEEEEcCCCH-HHHHHHHHHHhhcCccEeeccCCCceEEEecCCC
Q 038256 482 PNKAKEWVFCGSALSV-EEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDA 531 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~-~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~ 531 (691)
+....+++|+++|.-. -.|.....+++.+||+++...+..+|-||.++..
T Consensus 154 ~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdna 204 (276)
T COG5275 154 RECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNA 204 (276)
T ss_pred cccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCC
Confidence 3345788888898654 5678888899999999999999999999998753
No 137
>smart00336 BBOX B-Box-type zinc finger.
Probab=65.80 E-value=3.3 Score=30.26 Aligned_cols=27 Identities=4% Similarity=-0.038 Sum_probs=22.2
Q ss_pred ccccccccccc-ccccccccCCCCCceee
Q 038256 112 LLQPVYSAFGR-HQEDNSSSGQSLSANTL 139 (691)
Q Consensus 112 ~~~~~C~~~~~-iC~~C~~~~~H~~H~~~ 139 (691)
.+.+||.++.. +|..|... .|++|...
T Consensus 13 ~~~~~C~~c~~~iC~~C~~~-~H~~H~~~ 40 (42)
T smart00336 13 PAEFFCEECGALLCRTCDEA-EHRGHTVV 40 (42)
T ss_pred ceEEECCCCCcccccccChh-hcCCCcee
Confidence 45789998877 99999876 89998864
No 138
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=65.69 E-value=11 Score=45.97 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=32.9
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
.+.|.|+.|+|+|.+.. ++++++.+|+..||+|..+-
T Consensus 187 ~kpL~G~~fviTGtl~~-sr~elK~~Ie~~GGkvsssV 223 (815)
T PLN03122 187 GKPFSGMMISLSGRLSR-THQYWKKDIEKHGGKVANSV 223 (815)
T ss_pred CCCcCCcEEEEeCCCCC-CHHHHHHHHHHcCCEEcccc
Confidence 34699999999999876 78999999999999999875
No 139
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=65.32 E-value=0.9 Score=46.40 Aligned_cols=47 Identities=32% Similarity=0.835 Sum_probs=35.1
Q ss_pred cccccccc-ccccCce--ec--C-CCCcccccccccccC-CCCCCC--CCCCCccc
Q 038256 39 ELKCPLCL-NLFSRPL--LL--P-CDHIFCNSCIPRSAQ-CESECP--LCKSQCTY 85 (691)
Q Consensus 39 ~l~CpIC~-e~~~~Pv--~l--~-CgHsFC~~Ci~~~~~-~~~~CP--~Cr~~~~~ 85 (691)
+-.||||. +.|-+|- .| | |-|..|.+|+.+.+. +...|| -|.+.+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 34699998 5566772 22 4 999999999999885 577899 67765544
No 140
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.43 E-value=3.3 Score=49.51 Aligned_cols=40 Identities=28% Similarity=0.776 Sum_probs=35.0
Q ss_pred cccccccccccCce-ecCCCCcccccccccccCCCCCCCCCCCC
Q 038256 40 LKCPLCLNLFSRPL-LLPCDHIFCNSCIPRSAQCESECPLCKSQ 82 (691)
Q Consensus 40 l~CpIC~e~~~~Pv-~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~ 82 (691)
-.|..|.-.+.-|+ ...|||+|=+.|+. .+...||.|+..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 47999999999995 77999999999998 457889999763
No 141
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.05 E-value=2.4 Score=43.63 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=31.7
Q ss_pred hccccccccccccccccCceecCCCCcccccccccc
Q 038256 34 QKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRS 69 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~ 69 (691)
+.+.+.-.|.+|+..+.+||..+=||.||+.||.++
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEY 73 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHH
Confidence 456666779999999999999999999999999764
No 142
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=61.87 E-value=4.1 Score=43.26 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCCCCceeccCccCcc-cceecccccccCccccccCCceEeccccC
Q 038256 403 CGLKGAALGCYVRSCR-RSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 403 C~~~GA~I~C~~~~C~-~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
|...|.=|+|.+.+|. .+|||+|---. . .-.-..||+.=.
T Consensus 226 qvsyg~Mi~CDn~~C~~eWFH~~CVGL~----~-~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 226 QVSYGKMIGCDNPGCPIEWFHFTCVGLK----T-KPKGKWYCPRCK 266 (274)
T ss_pred ccccccccccCCCCCCcceEEEeccccc----c-CCCCcccchhhh
Confidence 4444888999999999 99999997432 1 123338998543
No 143
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=58.48 E-value=2.9 Score=44.52 Aligned_cols=50 Identities=22% Similarity=0.580 Sum_probs=38.6
Q ss_pred cccccccccccccccc---CceecCCCCcccccccccccCC---CCCCCCCCCCcc
Q 038256 35 KLALELKCPLCLNLFS---RPLLLPCDHIFCNSCIPRSAQC---ESECPLCKSQCT 84 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~---~Pv~l~CgHsFC~~Ci~~~~~~---~~~CP~Cr~~~~ 84 (691)
-+..-+.||+=.+.-+ .|+++.|||..-..-+.++.++ .+.||.|.....
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~ 387 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSK 387 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchh
Confidence 4566789999777665 3899999999988888776654 689999966543
No 144
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=58.40 E-value=5.1 Score=31.92 Aligned_cols=36 Identities=31% Similarity=0.628 Sum_probs=30.4
Q ss_pred ccccCcCCCC----CceeccCccCcccceecccccccCcccc
Q 038256 397 KLKCSRCGLK----GAALGCYVRSCRRSYHVPCALEISECRW 434 (691)
Q Consensus 397 ~l~C~~C~~~----GA~I~C~~~~C~~~fH~~CA~~~~g~~~ 434 (691)
.-+|..|+++ +..+.|- .|.+.||-.|+...++|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp--~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCP--ECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECC--CCCCcccHHHHhhCCceEe
Confidence 4579999998 6778996 5999999999998877775
No 145
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=55.52 E-value=4.5 Score=42.98 Aligned_cols=42 Identities=29% Similarity=0.787 Sum_probs=28.6
Q ss_pred cccccccccccC-ceecCCCCcccccccccccCCCCCCCCCCCCc
Q 038256 40 LKCPLCLNLFSR-PLLLPCDHIFCNSCIPRSAQCESECPLCKSQC 83 (691)
Q Consensus 40 l~CpIC~e~~~~-Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~ 83 (691)
..|--|...... -.+++|.|.||..|... ...+.||.|-..+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 346666544332 24789999999999853 2357899996544
No 146
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=55.35 E-value=2.4 Score=35.58 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=23.1
Q ss_pred ccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcc
Q 038256 39 ELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
++.||.|...+. +.. ++.+|..|-..+. ....||.|..++.
T Consensus 1 e~~CP~C~~~L~-~~~---~~~~C~~C~~~~~-~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELE-WQG---GHYHCEACQKDYK-KEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEE-EET---TEEEETTT--EEE-EEEE-TTT-SB-E
T ss_pred CCcCCCCCCccE-EeC---CEEECccccccce-ecccCCCcccHHH
Confidence 467999998754 222 8899999987643 3567999988774
No 147
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.30 E-value=2.9 Score=37.45 Aligned_cols=28 Identities=32% Similarity=0.685 Sum_probs=25.4
Q ss_pred CCCCcccccccccccCCCCCCCCCCCCc
Q 038256 56 PCDHIFCNSCIPRSAQCESECPLCKSQC 83 (691)
Q Consensus 56 ~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~ 83 (691)
-|.|.|=..||.+|++....||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 5999999999999999999999997654
No 148
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.11 E-value=11 Score=38.28 Aligned_cols=53 Identities=26% Similarity=0.546 Sum_probs=41.6
Q ss_pred hhcccccccccccccccc--CceecCCCCcccccccccccC--------CCCCCCCCCCCccc
Q 038256 33 LQKLALELKCPLCLNLFS--RPLLLPCDHIFCNSCIPRSAQ--------CESECPLCKSQCTY 85 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~--~Pv~l~CgHsFC~~Ci~~~~~--------~~~~CP~Cr~~~~~ 85 (691)
+.+-.-.-.|.+|.-.+. +-+.|-|.|.|=..|+..+.. .++.||.|..++.+
T Consensus 44 L~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 44 LQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred HhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 444455567999998886 568889999999999988764 26899999877643
No 149
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=54.02 E-value=2.4 Score=52.70 Aligned_cols=52 Identities=29% Similarity=0.579 Sum_probs=43.9
Q ss_pred HhhccccccccccccccccC-ceecCCCCcccccccccccCCCCCCCCCCCCc
Q 038256 32 HLQKLALELKCPLCLNLFSR-PLLLPCDHIFCNSCIPRSAQCESECPLCKSQC 83 (691)
Q Consensus 32 ~~~~l~e~l~CpIC~e~~~~-Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~ 83 (691)
.+.++-....|+||++++++ -...-|||.+|..|...|+.....||.|....
T Consensus 1146 y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1146 YLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred HHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 45566677799999999994 46788999999999999998899999998543
No 150
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.94 E-value=5 Score=44.72 Aligned_cols=46 Identities=28% Similarity=0.729 Sum_probs=31.5
Q ss_pred ccccccccccccCc-e---ecCCCCcccccccccccC------CCCCCCC--CCCCcc
Q 038256 39 ELKCPLCLNLFSRP-L---LLPCDHIFCNSCIPRSAQ------CESECPL--CKSQCT 84 (691)
Q Consensus 39 ~l~CpIC~e~~~~P-v---~l~CgHsFC~~Ci~~~~~------~~~~CP~--Cr~~~~ 84 (691)
..+|.||..-+..+ . +..|+|.||..|+.+... ....||. |...+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 56799999333332 2 457999999999998764 3677875 444443
No 151
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=53.60 E-value=2.1 Score=46.67 Aligned_cols=45 Identities=33% Similarity=0.755 Sum_probs=36.1
Q ss_pred cccccccccccccc-Cc---eecCCCCcccccccccccC--CCCCCCCCCC
Q 038256 37 ALELKCPLCLNLFS-RP---LLLPCDHIFCNSCIPRSAQ--CESECPLCKS 81 (691)
Q Consensus 37 ~e~l~CpIC~e~~~-~P---v~l~CgHsFC~~Ci~~~~~--~~~~CP~Cr~ 81 (691)
+-+|.|-.|.+.+- .| --|||.|.|-.+|+...+. +.-+||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34588999999874 22 3679999999999998874 4788999983
No 152
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.31 E-value=4.8 Score=46.64 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=36.3
Q ss_pred cccCcCCCCCce---eccCccCcccceecccccccCccccccCCceEeccccCCCCCCC
Q 038256 398 LKCSRCGLKGAA---LGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSVKFPI 453 (691)
Q Consensus 398 l~C~~C~~~GA~---I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~~~~~ 453 (691)
..|+.|+.+|.- |.|.. |.++||+.|--=. -=.-..-....||+.|...-...
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~--Cp~sFH~~CLePP-l~~eniP~g~W~C~ec~~k~~in 309 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDG--CPRSFHQTCLEPP-LEPENIPPGSWFCPECKIKSVIN 309 (613)
T ss_pred HHHHHhCCccccccceeecC--CchHHHHhhcCCC-CCcccCCCCccccCCCeeeeecc
Confidence 479999999999 88875 9999999998542 00111123367888777644433
No 153
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=50.21 E-value=30 Score=41.97 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=72.0
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEe-eccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHh
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVS-KFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEA 563 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~-~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~ 563 (691)
...+-++.-|-..+-.+++...-.-.|+.+. ..--..+||+|+..-. ..+..=..+.-..+++|+.+|.++
T Consensus 48 fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~--------a~~vk~~~~~~~~~~e~iie~~~~ 119 (1016)
T KOG2093|consen 48 FSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLP--------ADLVKGFTIPKHISIEWIIECCEN 119 (1016)
T ss_pred eeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccch--------HHHhccccchhhhcHHHHHHHHhc
Confidence 3445555555556666677776666777776 4444568999987420 111111123345679999999999
Q ss_pred CCCCCCCCcccccCCC-C-------CCCCchhhhhhhhccCCCCCCCceEEEecCc
Q 038256 564 MNPVGEEPYEINLDNH-G-------CEEGPKTGRLRALNKAPKLFDGLSFYFSGNF 611 (691)
Q Consensus 564 g~~vdEe~yei~~d~~-~-------~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~ 611 (691)
|+.+.-.+|....+.. . ....|+-.|.. ....++|....+++.|.-
T Consensus 120 ~~~~~~~~~~~~t~~~h~q~~~~~~~~~~~~D~q~~--~~~~ki~~~n~ikinG~~ 173 (1016)
T KOG2093|consen 120 GMDVGYYPYQLYTGQSHEQAQLAFPVTSFPKDQQIS--SQSSKIFKNNVIKINGYN 173 (1016)
T ss_pred cCccccccceeeccchhcccccCCCcccCCcccccc--ccchhccccceeeecCCC
Confidence 9999998887744321 1 11112222222 234679999999999853
No 154
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=50.15 E-value=9.1 Score=33.92 Aligned_cols=31 Identities=29% Similarity=0.600 Sum_probs=22.0
Q ss_pred ccccCcCCCC-CceeccCccCcccceecccccc
Q 038256 397 KLKCSRCGLK-GAALGCYVRSCRRSYHVPCALE 428 (691)
Q Consensus 397 ~l~C~~C~~~-GA~I~C~~~~C~~~fH~~CA~~ 428 (691)
...|.+|+++ |-..--.+ -|...||+.|+.+
T Consensus 78 ~~~C~vC~k~l~~~~f~~~-p~~~v~H~~C~~r 109 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVF-PCGHVVHYSCIKR 109 (109)
T ss_pred CCCccCcCCcCCCceEEEe-CCCeEEecccccC
Confidence 3579999999 54433333 3568999999863
No 155
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.14 E-value=11 Score=38.55 Aligned_cols=39 Identities=38% Similarity=0.824 Sum_probs=30.5
Q ss_pred cccccccccCceecCCCC-cccccccccccCCCCCCCCCCCCcc
Q 038256 42 CPLCLNLFSRPLLLPCDH-IFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 42 CpIC~e~~~~Pv~l~CgH-sFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
|-.|.+--..-+++||.| .+|..|-.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 888988777767889998 789999754 345999987553
No 156
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=49.01 E-value=50 Score=36.70 Aligned_cols=86 Identities=12% Similarity=0.025 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEe
Q 038256 473 QEPSFWGSSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVL 552 (691)
Q Consensus 473 ~~~s~~~~s~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIV 552 (691)
..|..+.....-..++.|++++=.....+.|.+.+-..|-.|++.++..+.-||++.+. ..+=|-+.|-..|+++|
T Consensus 283 ~nPG~~~~~~~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~----~~~gk~~~a~~~gipl~ 358 (377)
T PRK05601 283 ENPGTYEPGKGLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTR----DLDGKAMHAQRKGIPLL 358 (377)
T ss_pred CCCCccCCCCccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCC----CccchhhhhhhcCCCcc
Confidence 34445444455567888888998877889999999999999999999888888887642 25669999999999999
Q ss_pred ehhHHHHHHH
Q 038256 553 KIDWIKACME 562 (691)
Q Consensus 553 s~~Wl~~c~~ 562 (691)
+..=..+.++
T Consensus 359 ~d~~fl~~~~ 368 (377)
T PRK05601 359 SDVAFLAAVE 368 (377)
T ss_pred CHHHHHHHHH
Confidence 9866555554
No 157
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=47.47 E-value=6.7 Score=33.63 Aligned_cols=45 Identities=20% Similarity=0.562 Sum_probs=32.1
Q ss_pred cccCcCCCC--CceeccCc------------cCcccceecccccc----cCccccccCCceEe
Q 038256 398 LKCSRCGLK--GAALGCYV------------RSCRRSYHVPCALE----ISECRWDTENFLVL 442 (691)
Q Consensus 398 l~C~~C~~~--GA~I~C~~------------~~C~~~fH~~CA~~----~~g~~~~~~~~~~~ 442 (691)
-.|.+|... |.|+.|-. +.|.-.||..|..+ .+-|.+|...|.++
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 358888877 88888876 55899999999865 22466666555543
No 158
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=47.16 E-value=3.9 Score=34.70 Aligned_cols=44 Identities=30% Similarity=0.780 Sum_probs=32.7
Q ss_pred cccccccccc-----------C-ceec-CCCCcccccccccccCC---CCCCCCCCCCcc
Q 038256 41 KCPLCLNLFS-----------R-PLLL-PCDHIFCNSCIPRSAQC---ESECPLCKSQCT 84 (691)
Q Consensus 41 ~CpIC~e~~~-----------~-Pv~l-~CgHsFC~~Ci~~~~~~---~~~CP~Cr~~~~ 84 (691)
+|-||.-.|. + |..+ -|.|.|=..||.+|+.. ...||.||....
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 5666666664 2 4333 59999999999999853 577999998764
No 159
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=44.79 E-value=25 Score=37.13 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=32.2
Q ss_pred CCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccC
Q 038256 482 PNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWK 519 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~ 519 (691)
-.....+||-+|||++++++.|.++++..++.+..+|+
T Consensus 90 ~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfS 127 (266)
T COG0289 90 LEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFS 127 (266)
T ss_pred HHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccch
Confidence 33457899999999999999999999998777777765
No 160
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=43.52 E-value=8.9 Score=42.23 Aligned_cols=30 Identities=20% Similarity=0.663 Sum_probs=22.7
Q ss_pred CcccccccccccC-------------CCCCCCCCCCCccccCC
Q 038256 59 HIFCNSCIPRSAQ-------------CESECPLCKSQCTYADL 88 (691)
Q Consensus 59 HsFC~~Ci~~~~~-------------~~~~CP~Cr~~~~~~~l 88 (691)
.-.|..|+.+|+. +.-.||+||+.+...|+
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 3457799998873 36789999999876553
No 161
>PHA03096 p28-like protein; Provisional
Probab=40.08 E-value=7.6 Score=41.47 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=28.9
Q ss_pred cccccccccccC-c-------eecCCCCcccccccccccCC---CCCCCCCCC
Q 038256 40 LKCPLCLNLFSR-P-------LLLPCDHIFCNSCIPRSAQC---ESECPLCKS 81 (691)
Q Consensus 40 l~CpIC~e~~~~-P-------v~l~CgHsFC~~Ci~~~~~~---~~~CP~Cr~ 81 (691)
-.|.||++.-.+ | ++-.|.|.||..|+..|... .-.||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 569999986542 2 22369999999999988642 344555554
No 162
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=38.15 E-value=23 Score=32.80 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeecc
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFW 518 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~ 518 (691)
...+|+.+||+++++.+.|++++++.+..+..+|
T Consensus 91 g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 91 GVPLVIGTTGFSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp T-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred CCCEEEECCCCCHHHHHHHHHHhccCCEEEeCCC
Confidence 5789999999999999999999988776665543
No 163
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=37.57 E-value=24 Score=38.87 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=41.0
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecC
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAAT 529 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~ 529 (691)
.+...+.+..-+-+.+.+-.|.+-+..+||.|...|+..|||+|+..
T Consensus 121 ~aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR 167 (468)
T COG5067 121 CAFPAFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRR 167 (468)
T ss_pred cccchhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEee
Confidence 34566777788888888999999999999999999999999999974
No 164
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=36.37 E-value=1.5e+02 Score=28.00 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=41.0
Q ss_pred EEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHc----CCeEeehhHHH
Q 038256 488 WVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILN----GNWVLKIDWIK 558 (691)
Q Consensus 488 ~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~----G~wIVs~~Wl~ 558 (691)
++|+.++|..+.-..+.+-+.+.|+. +|...=.+|..+.|.+.+..+.. +.|.++|.|..
T Consensus 2 ~vFvS~SMP~~~Lk~l~~~a~~~g~~-----------~VlRG~~~~~~~~T~~~i~~L~~~~~~~~v~IdP~lF~ 65 (130)
T TIGR02742 2 MVFVSFSMPEPLLKQLLDQAEALGAP-----------LVIRGLLDNGFKATATRIQSLIKDGGKSGVQIDPQWFK 65 (130)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHhCCe-----------EEEeCCCCCCHHHHHHHHHHHHhcCCCCcEEEChHHHh
Confidence 57888889877666666666666642 33332233457899999998842 46899999985
No 165
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=35.69 E-value=17 Score=37.89 Aligned_cols=46 Identities=28% Similarity=0.579 Sum_probs=34.2
Q ss_pred hccccccCcCCCC--CceeccCccCc-ccceecccccccCccccccCCceEeccc
Q 038256 394 RGSKLKCSRCGLK--GAALGCYVRSC-RRSYHVPCALEISECRWDTENFLVLCPV 445 (691)
Q Consensus 394 r~~~l~C~~C~~~--GA~I~C~~~~C-~~~fH~~CA~~~~g~~~~~~~~~~~C~~ 445 (691)
.+-.+.| +|++. |-=|+|...+| +-+||++|.--. + .-....||+.
T Consensus 218 e~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk-~----pPKG~WYC~e 266 (271)
T COG5034 218 EGEELYC-FCQQVSYGQMVACDNANCKREWFHLECVGLK-E----PPKGKWYCPE 266 (271)
T ss_pred cCceeEE-EecccccccceecCCCCCchhheeccccccC-C----CCCCcEeCHH
Confidence 5555666 57777 99999999999 579999997543 1 2456678865
No 166
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=33.28 E-value=16 Score=27.68 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=16.7
Q ss_pred cCcCCCC-CceeccCccCcccceeccccccc
Q 038256 400 CSRCGLK-GAALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 400 C~~C~~~-GA~I~C~~~~C~~~fH~~CA~~~ 429 (691)
|..|+.- =-.+.|....|...+|+.|+..-
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHH
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHH
Confidence 5667666 34578999999999999999763
No 167
>COG5275 BRCT domain type II [General function prediction only]
Probab=32.54 E-value=69 Score=32.76 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=33.5
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
+.-+.|..|+|+|......+++-..||...||+|....
T Consensus 154 ~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~p 191 (276)
T COG5275 154 RECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVP 191 (276)
T ss_pred cccccccEEEEecccccccchhHHHHHHHhCCeeeccc
Confidence 45689999999998777888999999999999998864
No 168
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=30.80 E-value=41 Score=23.23 Aligned_cols=26 Identities=38% Similarity=0.770 Sum_probs=20.2
Q ss_pred ccCcCCCC--Cc-eeccCccCcccceecccc
Q 038256 399 KCSRCGLK--GA-ALGCYVRSCRRSYHVPCA 426 (691)
Q Consensus 399 ~C~~C~~~--GA-~I~C~~~~C~~~fH~~CA 426 (691)
.|.+|++. |- .-.| ..|....|+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C--~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHC--SECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEe--CCCCCeEcCccC
Confidence 58999998 44 4467 457799999997
No 169
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=29.92 E-value=70 Score=37.89 Aligned_cols=87 Identities=25% Similarity=0.434 Sum_probs=54.3
Q ss_pred ccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEc-CCccc-CHHHHHHhccccccCcCCCC-
Q 038256 330 CGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYA-GDTVK-NLKAELARGSKLKCSRCGLK- 406 (691)
Q Consensus 330 C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~-~~~l~-~l~~~~~r~~~l~C~~C~~~- 406 (691)
|+-|--.+.. ...||+ |=|| ..-.+-||..|- ++..+ -++.+ .=-+--.|+.+.+|-+|-.+
T Consensus 8 CCVCSDErGW-aeNPLV-YCDG---------~nCsVAVHQaCY----GIvqVPtGpWfCrKCesqeraarvrCeLCP~kd 72 (900)
T KOG0956|consen 8 CCVCSDERGW-AENPLV-YCDG---------HNCSVAVHQACY----GIVQVPTGPWFCRKCESQERAARVRCELCPHKD 72 (900)
T ss_pred eeeecCcCCC-ccCcee-eecC---------CCceeeeehhcc----eeEecCCCchhhhhhhhhhhhccceeecccCcc
Confidence 6777654332 234554 4344 234688999994 33333 22222 22233456667999999988
Q ss_pred CceeccCccCcccceecccccccCcccc
Q 038256 407 GAALGCYVRSCRRSYHVPCALEISECRW 434 (691)
Q Consensus 407 GA~I~C~~~~C~~~fH~~CA~~~~g~~~ 434 (691)
||-=.=.+.+ +-||.||+-++.++|
T Consensus 73 GALKkTDn~G---WAHVVCALYIPEVrF 97 (900)
T KOG0956|consen 73 GALKKTDNGG---WAHVVCALYIPEVRF 97 (900)
T ss_pred cceecccCCC---ceEEEEEeeccceee
Confidence 7766666554 899999998777665
No 170
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.74 E-value=13 Score=39.28 Aligned_cols=32 Identities=25% Similarity=0.815 Sum_probs=23.5
Q ss_pred CCCcccccccccccC-------------CCCCCCCCCCCccccCC
Q 038256 57 CDHIFCNSCIPRSAQ-------------CESECPLCKSQCTYADL 88 (691)
Q Consensus 57 CgHsFC~~Ci~~~~~-------------~~~~CP~Cr~~~~~~~l 88 (691)
|....|..|+.+|+. ++-.||.||+.+...++
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 344567789988763 46789999998877653
No 171
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=28.54 E-value=28 Score=26.33 Aligned_cols=38 Identities=18% Similarity=0.635 Sum_probs=21.1
Q ss_pred cccccccccCceecC---CCCcccccccccccCCC--CCCCCC
Q 038256 42 CPLCLNLFSRPLLLP---CDHIFCNSCIPRSAQCE--SECPLC 79 (691)
Q Consensus 42 CpIC~e~~~~Pv~l~---CgHsFC~~Ci~~~~~~~--~~CP~C 79 (691)
|.+|.++...-+.-+ |+-.+=..|+..+++.. ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667888877665444 87777778888888753 379987
No 172
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=28.44 E-value=20 Score=28.21 Aligned_cols=37 Identities=27% Similarity=0.636 Sum_probs=21.9
Q ss_pred cccccccccccccCceecCCCCcccccccccccC--CCCCCCCCCC
Q 038256 38 LELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ--CESECPLCKS 81 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~--~~~~CP~Cr~ 81 (691)
+.+.||.|.+.|... .++.-|...... ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 357899999965543 123333333222 3578999975
No 173
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=26.80 E-value=35 Score=28.49 Aligned_cols=32 Identities=31% Similarity=0.703 Sum_probs=13.7
Q ss_pred ccccCcCCCC----C--ceeccCccCcccceecccccc
Q 038256 397 KLKCSRCGLK----G--AALGCYVRSCRRSYHVPCALE 428 (691)
Q Consensus 397 ~l~C~~C~~~----G--A~I~C~~~~C~~~fH~~CA~~ 428 (691)
.+.|.+|... | ..+.|.+.+|...||..|-.+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 3578888865 2 347899999999999999876
No 174
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=26.78 E-value=7.8 Score=41.13 Aligned_cols=47 Identities=30% Similarity=0.774 Sum_probs=35.4
Q ss_pred ccccccccccccC-c--eecCCCCcccccccccccC-----------------------CCCCCCCCCCCccc
Q 038256 39 ELKCPLCLNLFSR-P--LLLPCDHIFCNSCIPRSAQ-----------------------CESECPLCKSQCTY 85 (691)
Q Consensus 39 ~l~CpIC~e~~~~-P--v~l~CgHsFC~~Ci~~~~~-----------------------~~~~CP~Cr~~~~~ 85 (691)
...|.||+--|.+ | ..++|.|.|=..|+.+++. ....||+||..+..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 3569999988864 4 4679999999999988763 13459999977643
No 175
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.70 E-value=26 Score=37.10 Aligned_cols=41 Identities=32% Similarity=0.698 Sum_probs=32.2
Q ss_pred cccccccccccccCceecCC----CCcccccccccccC-----CCCCCCC
Q 038256 38 LELKCPLCLNLFSRPLLLPC----DHIFCNSCIPRSAQ-----CESECPL 78 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l~C----gHsFC~~Ci~~~~~-----~~~~CP~ 78 (691)
.-|.|.+|.|-+.|--...| .|-||.-|-.+..+ +...||.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 44899999999999766666 59999999988775 2455664
No 176
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.47 E-value=23 Score=40.32 Aligned_cols=35 Identities=23% Similarity=0.634 Sum_probs=29.5
Q ss_pred ccccccccccccccC-ceecCCCCcccccccccccC
Q 038256 37 ALELKCPLCLNLFSR-PLLLPCDHIFCNSCIPRSAQ 71 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~-Pv~l~CgHsFC~~Ci~~~~~ 71 (691)
.....|.||.+.+.. .+.+.|||.||..|...++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 445789999999985 67889999999999988764
No 177
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=24.43 E-value=49 Score=39.46 Aligned_cols=86 Identities=28% Similarity=0.423 Sum_probs=51.8
Q ss_pred CcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEcccccc--CCC-cEEcCCcccCHHHHHHhccccccCc
Q 038256 326 NNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEW--APQ-VYYAGDTVKNLKAELARGSKLKCSR 402 (691)
Q Consensus 326 ~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalW--sp~-v~~~~~~l~~l~~~~~r~~~l~C~~ 402 (691)
....|.+|... |++..-.|+...+. .+-||..|.=- .|+ -++-..-..+ ..-.|.+
T Consensus 270 edviCDvCrsp-D~e~~neMVfCd~C------------n~cVHqaCyGIle~p~gpWlCr~Calg--------~~ppCvL 328 (893)
T KOG0954|consen 270 EDVICDVCRSP-DSEEANEMVFCDKC------------NICVHQACYGILEVPEGPWLCRTCALG--------IEPPCVL 328 (893)
T ss_pred ccceeceecCC-CccccceeEEeccc------------hhHHHHhhhceeecCCCCeeehhcccc--------CCCCeee
Confidence 56789999976 55555566654332 46677777521 111 1111111111 3467999
Q ss_pred CCCCCceeccCccCcccceecccccccCccc
Q 038256 403 CGLKGAALGCYVRSCRRSYHVPCALEISECR 433 (691)
Q Consensus 403 C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~ 433 (691)
|-++|.++.=... =.++-|+.||+-++...
T Consensus 329 CPkkGGamK~~~s-gT~wAHvsCALwIPEVs 358 (893)
T KOG0954|consen 329 CPKKGGAMKPTKS-GTKWAHVSCALWIPEVS 358 (893)
T ss_pred ccccCCcccccCC-CCeeeEeeeeeccceee
Confidence 9999888754432 35899999999865543
No 178
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.28 E-value=44 Score=21.82 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=12.1
Q ss_pred ccccccccccCCCCCCCCCCCC
Q 038256 61 FCNSCIPRSAQCESECPLCKSQ 82 (691)
Q Consensus 61 FC~~Ci~~~~~~~~~CP~Cr~~ 82 (691)
||..|-.+...+...||.|..+
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 4555555554455556666543
No 179
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=23.98 E-value=31 Score=43.91 Aligned_cols=46 Identities=33% Similarity=0.720 Sum_probs=30.6
Q ss_pred ccccccc-cccc-Cc-eecCCCCccccccccccc----CC------CCCCCCCCCCccc
Q 038256 40 LKCPLCL-NLFS-RP-LLLPCDHIFCNSCIPRSA----QC------ESECPLCKSQCTY 85 (691)
Q Consensus 40 l~CpIC~-e~~~-~P-v~l~CgHsFC~~Ci~~~~----~~------~~~CP~Cr~~~~~ 85 (691)
--|-||. +.+. .| +.|.|+|.|-..|..+.+ .+ -..||+|..++..
T Consensus 3487 DmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3487 DMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3477776 2332 34 689999999777765543 22 3689999877643
No 180
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=23.78 E-value=56 Score=38.93 Aligned_cols=106 Identities=12% Similarity=-0.060 Sum_probs=81.3
Q ss_pred eccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhCC-CCCCCCcccccCCCCCCCCchhhhhhhhc
Q 038256 516 KFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMN-PVGEEPYEINLDNHGCEEGPKTGRLRALN 594 (691)
Q Consensus 516 ~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~-~vdEe~yei~~d~~~~~~gp~~~R~~~~~ 594 (691)
-+..-.++|+..+ -++|....+..+.||..+.|-.++.+... --+.+.|+. .+++++.|+....
T Consensus 22 lEc~ic~~~~~~p--------~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~-------~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 22 LECPICLEHVKEP--------SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL-------RESPRFSQLSKES 86 (684)
T ss_pred ccCCceeEEeecc--------chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc-------cccchHHHHHHHh
Confidence 3445567888876 36789999999999999999987433221 124566666 4589999998877
Q ss_pred cCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCch
Q 038256 595 KAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGE 636 (691)
Q Consensus 595 ~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~ 636 (691)
...+.|.++.+++...+....++....+..+.++.++-..+.
T Consensus 87 lk~k~~~~~~~~l~~s~~s~p~~k~~~~~~~~~~e~l~~qek 128 (684)
T KOG4362|consen 87 LKTKSASQCDTGLEYSFKSLPAKKEFNLPEHLSDEVLIIQEK 128 (684)
T ss_pred cCCccccccccccccccccCCcHhhhhhhhccchhhhhcccc
Confidence 778899999999988777777788999999999998887544
No 181
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=23.66 E-value=48 Score=34.97 Aligned_cols=51 Identities=27% Similarity=0.685 Sum_probs=30.9
Q ss_pred EEccccccCCCcEEcCCcccCHHHHHHhcc-c-cccCcCCCCCce------eccCccCcccceeccccccc
Q 038256 367 VHSKCIEWAPQVYYAGDTVKNLKAELARGS-K-LKCSRCGLKGAA------LGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 367 vH~~CalWsp~v~~~~~~l~~l~~~~~r~~-~-l~C~~C~~~GA~------I~C~~~~C~~~fH~~CA~~~ 429 (691)
-|-.|+-|++ |+-.++++.+ + +-|.+|..=|.+ +-|. .|.+-||..|-.-.
T Consensus 256 ghpsclqft~----------nm~~avk~yrwqcieck~csicgtsenddqllfcd--dcdrgyhmyclspp 314 (336)
T KOG1244|consen 256 GHPSCLQFTA----------NMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCD--DCDRGYHMYCLSPP 314 (336)
T ss_pred CCcchhhhhH----------HHHHHHHhheeeeeecceeccccCcCCCceeEeec--ccCCceeeEecCCC
Confidence 5778887765 3444555443 2 234444433333 6775 59999999998643
No 182
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=23.64 E-value=50 Score=39.46 Aligned_cols=69 Identities=23% Similarity=0.486 Sum_probs=47.2
Q ss_pred ccccccccccccccccCce-ecCCCCccccccccccc----CCCCCCCCCCCCccccCCCchHHHHHHHHHHhc
Q 038256 35 KLALELKCPLCLNLFSRPL-LLPCDHIFCNSCIPRSA----QCESECPLCKSQCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv-~l~CgHsFC~~Ci~~~~----~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
.+.-.|.|||+...+.-|. ...|.|.-|..-+.-.. +..+.||+|.+.....++..+.++.+++..+..
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 4556688999887766553 55677765544332111 137889999999988888888777777666543
No 183
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.61 E-value=28 Score=34.30 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=24.7
Q ss_pred cCCCCcccccccccccCC-----------CCCCCCCCCCccc
Q 038256 55 LPCDHIFCNSCIPRSAQC-----------ESECPLCKSQCTY 85 (691)
Q Consensus 55 l~CgHsFC~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 85 (691)
..||..|-+-|+..|+++ -..||.|..++..
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 369999999999999862 2469999887754
No 184
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=22.54 E-value=60 Score=31.69 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=0.0
Q ss_pred cCCCCCcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCCcccCHHHHHHhcccccc
Q 038256 321 IDSCANNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGDTVKNLKAELARGSKLKC 400 (691)
Q Consensus 321 ~~~~~~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~~l~~l~~~~~r~~~l~C 400 (691)
.+++...+.|-.|....+ ...-|+.. .+...|||..| ++.=+..++...|
T Consensus 2 ~~~s~~~~~CRIC~~~~~-~~~~PC~C-------------kGs~k~VH~sC----------------L~rWi~~s~~~~C 51 (162)
T PHA02825 2 EDVSLMDKCCWICKDEYD-VVTNYCNC-------------KNENKIVHKEC----------------LEEWINTSKNKSC 51 (162)
T ss_pred CCcCCCCCeeEecCCCCC-CccCCccc-------------CCCchHHHHHH----------------HHHHHhcCCCCcc
Q ss_pred CcCCCC
Q 038256 401 SRCGLK 406 (691)
Q Consensus 401 ~~C~~~ 406 (691)
..|+.+
T Consensus 52 eiC~~~ 57 (162)
T PHA02825 52 KICNGP 57 (162)
T ss_pred cccCCe
No 185
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=22.27 E-value=32 Score=36.76 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=22.3
Q ss_pred ccccccccccccCceecCC-----CCcccccccccccCCCCCCCCCCCC
Q 038256 39 ELKCPLCLNLFSRPLLLPC-----DHIFCNSCIPRSAQCESECPLCKSQ 82 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv~l~C-----gHsFC~~Ci~~~~~~~~~CP~Cr~~ 82 (691)
.-.||||.....--+...= .+-+|..|-..|.-....||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 3689999987654443332 3577999999998778899999654
No 186
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.05 E-value=47 Score=37.11 Aligned_cols=42 Identities=24% Similarity=0.477 Sum_probs=30.3
Q ss_pred cccccccccccccc-----CceecCCCCcccccccccccCCCCCCCC
Q 038256 37 ALELKCPLCLNLFS-----RPLLLPCDHIFCNSCIPRSAQCESECPL 78 (691)
Q Consensus 37 ~e~l~CpIC~e~~~-----~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~ 78 (691)
..-..||.|...+. +-++-.|||-||..|...|......|..
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~ 350 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYE 350 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccC
Confidence 34466999987764 4566679999999999888765555543
No 187
>PF14353 CpXC: CpXC protein
Probab=21.16 E-value=31 Score=32.04 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=7.8
Q ss_pred CCCCCCCCCCcc
Q 038256 73 ESECPLCKSQCT 84 (691)
Q Consensus 73 ~~~CP~Cr~~~~ 84 (691)
.+.||.|...+.
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 466777776554
No 188
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=21.07 E-value=1.2e+02 Score=28.95 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=40.6
Q ss_pred cCCCHHHHHHHHHHHhhc----------------CccEeeccCCCceEEEecCCCCCccc-chHHHHHHHHcCC
Q 038256 493 SALSVEEKLLLVRFGNMI----------------GVPVSKFWKPNVTHVIAATDAKGSCT-RTLKVLMAILNGN 549 (691)
Q Consensus 493 Sgls~~ek~~l~~~~~~l----------------G~~v~~~~~~~vTHlI~~~~~~~~~~-RT~K~L~Aia~G~ 549 (691)
-||+++.+..|.+++... |..++.+|. .++|.|+-.+++-... |+.+-|.|||+.+
T Consensus 50 GgL~~~~~~rL~~la~~~~~~~~~~~~~~~~~~pGt~LvREw~-G~~h~V~V~~dGfey~Gr~y~SLSaIAr~I 122 (136)
T PF11149_consen 50 GGLSEETRRRLDALAEELEKRKRAKRRDDRRPAPGTRLVREWN-GREHEVTVLEDGFEYQGRRYKSLSAIARAI 122 (136)
T ss_pred CCCCHHHHHHHHHHHhccccccccCCCcccCCCCCcEEEEEEC-CEEEEEEEeCCCEEECCccccCHHHHHHHH
Confidence 489999999999998874 344566775 5888888765442222 8888889988643
No 189
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.05 E-value=4.2e+02 Score=24.13 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=40.9
Q ss_pred EEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCC-----eEeehhHHH
Q 038256 488 WVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGN-----WVLKIDWIK 558 (691)
Q Consensus 488 ~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~-----wIVs~~Wl~ 558 (691)
++|..++|.++.-..+.+-+...| ++-|+-+-.. |.++-|.+++..|.... +.++|.|..
T Consensus 1 ~iFvS~SMP~~~L~~l~~~a~~~~----------~~~V~RG~~~-g~~~~t~~~~~~l~~~~~~~~~v~IdP~~F~ 65 (113)
T PF09673_consen 1 YIFVSFSMPDASLRNLLKQAERAG----------VVVVFRGFPD-GSFKPTAKAIQELLRKDDPCPGVQIDPRLFR 65 (113)
T ss_pred CEEEECCCCHHHHHHHHHHHHhCC----------cEEEEECCCC-CCHHHHHHHHHHHhhccCCCcceeEChhHHh
Confidence 478888899766555555555543 3444444433 36889999999998654 888999884
No 190
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.02 E-value=38 Score=23.23 Aligned_cols=26 Identities=31% Similarity=0.713 Sum_probs=11.0
Q ss_pred ccCcCCCCC---ceeccCccCcccceecccc
Q 038256 399 KCSRCGLKG---AALGCYVRSCRRSYHVPCA 426 (691)
Q Consensus 399 ~C~~C~~~G---A~I~C~~~~C~~~fH~~CA 426 (691)
.|..|++++ ..-.| ..|.-.+|..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C--~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRC--SECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE---TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEEC--ccCCCccChhcC
Confidence 589999994 34567 469999999987
No 191
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.63 E-value=57 Score=27.53 Aligned_cols=53 Identities=23% Similarity=0.522 Sum_probs=34.3
Q ss_pred cccccccccc----CceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHH
Q 038256 41 KCPLCLNLFS----RPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLE 95 (691)
Q Consensus 41 ~CpIC~e~~~----~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 95 (691)
.|--|-..+- +..+-.=.|+||..|.+..+. ..||-|.-.+..+.+++...|.
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~--g~CPnCGGelv~RP~RPaa~L~ 63 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLH--GLCPNCGGELVARPIRPAAKLA 63 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc--CcCCCCCchhhcCcCChHHHHh
Confidence 3555655442 333334457899999986553 5699998888777666654443
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=20.25 E-value=73 Score=34.62 Aligned_cols=46 Identities=24% Similarity=0.666 Sum_probs=36.0
Q ss_pred ccccccccccc--Cc--eecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 40 LKCPLCLNLFS--RP--LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 40 l~CpIC~e~~~--~P--v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
-.||||.+... +- +-.+|++..|..|+........+||.||.++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 56999999763 22 334788888999998888888999999977643
No 193
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=20.24 E-value=1.2e+02 Score=38.16 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
.+.|.|+.|.+.|.+.. ...++..+|+..||++....
T Consensus 391 ~~~l~~~~i~i~G~~~~-~~~~~k~~Ie~~GG~~s~~v 427 (981)
T PLN03123 391 SEFLGDLKVSIVGASKE-KVTEWKAKIEEAGGVFHATV 427 (981)
T ss_pred CCCcCCeEEEEecCCCC-cHHHHHHHHHhcCCEEeeec
Confidence 46799999999998754 34899999999999998874
Done!