Query 038256
Match_columns 691
No_of_seqs 558 out of 2708
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l0b_A BRCA1; TANDEM-BRCT, thr 100.0 6.4E-28 2.2E-32 245.0 17.3 151 483-637 3-155 (229)
2 2nte_A BARD-1, BRCA1-associate 99.9 2.4E-27 8.2E-32 238.1 18.3 142 486-637 1-142 (210)
3 1t15_A Breast cancer type 1 su 99.9 3.5E-27 1.2E-31 236.6 15.9 149 485-636 2-152 (214)
4 3al2_A DNA topoisomerase 2-bin 99.9 4.4E-26 1.5E-30 233.0 14.7 146 485-637 7-171 (235)
5 3sqd_A PAX-interacting protein 99.9 2E-26 7E-31 233.1 10.7 166 483-657 12-179 (219)
6 3u3z_A Microcephalin; DNA repa 99.9 2.9E-25 9.9E-30 221.5 11.9 140 486-634 10-154 (199)
7 2etx_A Mediator of DNA damage 99.9 2.1E-23 7.1E-28 209.6 10.8 140 485-636 10-151 (209)
8 3l41_A BRCT-containing protein 99.9 7.3E-24 2.5E-28 214.3 5.9 143 484-636 5-150 (220)
9 1kzy_C Tumor suppressor P53-bi 99.8 8.9E-19 3E-23 181.5 13.5 127 499-635 59-191 (259)
10 3olc_X DNA topoisomerase 2-bin 99.7 2.4E-16 8.1E-21 166.4 14.6 129 484-634 105-233 (298)
11 3l3e_A DNA topoisomerase 2-bin 99.6 3.3E-15 1.1E-19 134.0 8.5 92 481-575 12-103 (107)
12 2vxb_A DNA repair protein RHP9 99.6 1.7E-14 5.7E-19 147.8 14.6 143 486-634 4-197 (241)
13 2d8m_A DNA-repair protein XRCC 99.5 5.1E-14 1.7E-18 130.6 9.8 89 483-577 21-109 (129)
14 3l46_A Protein ECT2; alternati 99.5 1.1E-14 3.6E-19 131.7 5.0 88 482-575 19-106 (112)
15 2cou_A ECT2 protein; BRCT doma 99.5 3.6E-14 1.2E-18 127.8 5.6 88 483-576 11-98 (109)
16 1jm7_B BARD1, BRCA1-associated 99.4 7.3E-14 2.5E-18 127.2 5.6 73 30-104 13-86 (117)
17 1t1h_A Gspef-atpub14, armadill 99.4 1.1E-13 3.7E-18 116.6 2.0 70 35-104 4-74 (78)
18 4id3_A DNA repair protein REV1 99.4 8.9E-13 3E-17 114.2 7.2 84 483-574 6-91 (92)
19 2kr4_A Ubiquitin conjugation f 99.4 1.6E-13 5.4E-18 118.1 2.3 71 33-103 8-78 (85)
20 2kre_A Ubiquitin conjugation f 99.3 3.1E-13 1.1E-17 119.8 3.7 73 33-105 23-95 (100)
21 3ii6_X DNA ligase 4; XRCC4, NH 99.3 2.1E-11 7.3E-16 126.3 17.5 143 485-634 11-208 (263)
22 1wgm_A Ubiquitin conjugation f 99.3 4.6E-13 1.6E-17 118.3 3.9 72 33-104 16-88 (98)
23 3ztg_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 116.9 3.1 72 33-104 7-82 (92)
24 3lrq_A E3 ubiquitin-protein li 99.3 2.5E-13 8.5E-18 120.3 1.7 77 30-106 13-91 (100)
25 2y43_A E3 ubiquitin-protein li 99.3 4.9E-13 1.7E-17 117.9 3.3 77 30-106 13-90 (99)
26 3fl2_A E3 ubiquitin-protein li 99.3 6.5E-13 2.2E-17 122.0 3.5 74 30-103 43-118 (124)
27 2egp_A Tripartite motif-contai 99.3 9.6E-14 3.3E-18 116.9 -2.3 65 33-97 6-77 (79)
28 2ebw_A DNA repair protein REV1 99.3 2.6E-12 8.8E-17 112.8 6.4 84 483-574 11-95 (97)
29 1z6u_A NP95-like ring finger p 99.3 1.1E-12 3.9E-17 124.6 3.2 73 31-103 70-144 (150)
30 1wf6_A Similar to S.pombe -RAD 99.2 2.9E-11 9.8E-16 112.5 11.3 89 482-575 38-127 (132)
31 2ckl_A Polycomb group ring fin 99.2 2.9E-12 1E-16 114.8 3.2 71 33-103 9-84 (108)
32 3olc_X DNA topoisomerase 2-bin 99.2 2.4E-11 8.3E-16 128.1 10.3 87 484-576 199-286 (298)
33 3pa6_A Microcephalin; BRCT dom 99.2 1.6E-11 5.5E-16 110.0 7.5 87 485-577 8-98 (107)
34 2yu4_A E3 SUMO-protein ligase 99.2 3.2E-12 1.1E-16 111.9 1.6 71 35-105 3-83 (94)
35 1jm7_A BRCA1, breast cancer ty 99.2 2.2E-12 7.4E-17 115.9 0.5 74 30-103 12-88 (112)
36 2lq6_A Bromodomain-containing 99.2 1.8E-12 6E-17 111.8 -0.5 57 392-449 12-84 (87)
37 2ecw_A Tripartite motif-contai 99.2 7.1E-13 2.4E-17 112.7 -2.9 65 33-97 13-83 (85)
38 2ecv_A Tripartite motif-contai 99.2 9.4E-13 3.2E-17 111.9 -2.5 65 33-97 13-83 (85)
39 4ayc_A E3 ubiquitin-protein li 99.2 3.8E-12 1.3E-16 119.2 1.2 67 33-101 47-113 (138)
40 3l11_A E3 ubiquitin-protein li 99.2 1E-11 3.5E-16 112.4 3.4 70 33-102 9-86 (115)
41 2ysl_A Tripartite motif-contai 99.1 1.5E-11 5E-16 101.9 2.8 57 32-88 13-72 (73)
42 3ef1_A RNA polymerase II subun 99.1 3.7E-11 1.3E-15 131.9 6.3 85 484-574 352-441 (442)
43 2csy_A Zinc finger protein 183 99.1 1.6E-11 5.4E-16 104.1 2.5 67 34-104 10-76 (81)
44 2djb_A Polycomb group ring fin 99.1 1.3E-11 4.5E-16 102.3 1.5 59 33-91 9-68 (72)
45 3t7k_A RTT107, regulator of TY 99.1 3.3E-10 1.1E-14 114.2 11.2 134 485-632 20-170 (256)
46 3ef0_A RNA polymerase II subun 99.1 9.3E-11 3.2E-15 127.0 7.1 85 484-574 282-371 (372)
47 2ecy_A TNF receptor-associated 99.1 2.5E-11 8.7E-16 98.7 1.6 56 33-88 9-65 (66)
48 2f42_A STIP1 homology and U-bo 99.1 3.3E-11 1.1E-15 117.3 2.5 70 35-104 102-172 (179)
49 2yur_A Retinoblastoma-binding 99.1 2.9E-11 9.9E-16 100.8 1.7 53 33-85 9-64 (74)
50 2c2l_A CHIP, carboxy terminus 99.1 4.9E-11 1.7E-15 123.5 3.6 70 35-104 204-274 (281)
51 3hct_A TNF receptor-associated 99.0 2E-11 6.7E-16 111.2 0.1 72 32-103 11-83 (118)
52 2ckl_B Ubiquitin ligase protei 99.0 3.9E-11 1.3E-15 115.6 1.7 71 33-103 48-121 (165)
53 2coe_A Deoxynucleotidyltransfe 99.0 1.3E-09 4.3E-14 99.2 10.7 92 480-574 18-113 (120)
54 3pc6_A DNA repair protein XRCC 99.0 6.1E-10 2.1E-14 99.1 8.3 85 485-575 8-95 (104)
55 2ysj_A Tripartite motif-contai 99.0 6.1E-11 2.1E-15 95.5 1.0 48 32-79 13-63 (63)
56 1z56_C DNA ligase IV; DNA repa 99.0 3.5E-11 1.2E-15 124.4 -1.0 129 499-634 27-195 (264)
57 1rmd_A RAG1; V(D)J recombinati 99.0 6.5E-11 2.2E-15 107.2 0.9 71 32-102 16-88 (116)
58 3ng2_A RNF4, snurf, ring finge 99.0 5.3E-11 1.8E-15 97.9 -0.7 57 35-91 6-69 (71)
59 1bor_A Transcription factor PM 98.9 3.8E-10 1.3E-14 89.0 4.0 47 37-86 4-50 (56)
60 2d8t_A Dactylidin, ring finger 98.9 1.1E-10 3.8E-15 96.4 0.6 52 35-86 11-62 (71)
61 3htk_C E3 SUMO-protein ligase 98.9 1.9E-10 6.7E-15 117.3 1.8 71 33-103 175-250 (267)
62 1g25_A CDK-activating kinase a 98.9 1.5E-10 5.3E-15 93.8 0.8 54 38-91 2-61 (65)
63 2ct2_A Tripartite motif protei 98.9 1.9E-10 6.6E-15 98.5 1.1 54 33-86 9-69 (88)
64 2ecj_A Tripartite motif-contai 98.9 2.6E-10 8.9E-15 89.9 1.5 47 33-79 9-58 (58)
65 2jw5_A DNA polymerase lambda; 98.9 2.1E-10 7.3E-15 102.6 0.7 80 493-574 22-103 (106)
66 1e4u_A Transcriptional repress 98.9 3.3E-10 1.1E-14 95.7 1.8 56 33-88 5-65 (78)
67 2ect_A Ring finger protein 126 98.9 7.3E-10 2.5E-14 92.9 3.7 58 34-91 10-70 (78)
68 3hcs_A TNF receptor-associated 98.9 2.1E-10 7.3E-15 110.9 0.0 72 32-103 11-83 (170)
69 2dun_A POL MU, DNA polymerase 98.9 1.8E-09 6.1E-14 99.0 6.0 87 485-574 13-106 (133)
70 3knv_A TNF receptor-associated 98.9 1.6E-10 5.5E-15 108.7 -1.0 70 33-102 25-104 (141)
71 2xeu_A Ring finger protein 4; 98.8 1.6E-10 5.4E-15 92.8 -1.7 54 38-91 2-62 (64)
72 2ea6_A Ring finger protein 4; 98.8 2.8E-10 9.6E-15 92.8 -0.3 53 33-85 9-68 (69)
73 1iym_A EL5; ring-H2 finger, ub 98.8 1.5E-09 5.3E-14 84.6 3.6 49 36-84 2-54 (55)
74 4ic3_A E3 ubiquitin-protein li 98.8 2.4E-09 8.1E-14 89.3 2.6 52 30-85 15-67 (74)
75 2ecn_A Ring finger protein 141 98.7 9.1E-10 3.1E-14 90.4 -0.9 53 33-86 9-61 (70)
76 2ecm_A Ring finger and CHY zin 98.7 3E-09 1E-13 82.8 1.4 47 38-84 4-54 (55)
77 1chc_A Equine herpes virus-1 r 98.7 2.7E-09 9.2E-14 86.9 1.1 49 37-85 3-52 (68)
78 3huf_A DNA repair and telomere 98.7 5.4E-08 1.9E-12 101.5 10.5 151 486-656 114-274 (325)
79 2ecg_A Baculoviral IAP repeat- 98.7 7.7E-09 2.6E-13 86.4 2.9 52 30-85 16-68 (75)
80 4ap4_A E3 ubiquitin ligase RNF 98.7 2.8E-09 9.7E-14 97.8 0.3 54 37-90 5-65 (133)
81 2l0b_A E3 ubiquitin-protein li 98.6 4.7E-09 1.6E-13 91.0 1.0 51 35-85 36-89 (91)
82 1x4j_A Ring finger protein 38; 98.6 4.6E-09 1.6E-13 87.5 0.3 51 35-85 19-72 (75)
83 2kiz_A E3 ubiquitin-protein li 98.6 6E-09 2E-13 85.2 1.0 51 35-85 10-63 (69)
84 2ep4_A Ring finger protein 24; 98.6 4.6E-09 1.6E-13 87.1 -0.2 53 33-85 9-64 (74)
85 2yho_A E3 ubiquitin-protein li 98.5 1.6E-08 5.6E-13 85.4 1.6 53 30-86 9-62 (79)
86 1v87_A Deltex protein 2; ring- 98.5 2.4E-08 8.2E-13 89.8 1.7 47 39-85 25-94 (114)
87 3ii6_X DNA ligase 4; XRCC4, NH 98.4 3.6E-07 1.2E-11 94.5 8.9 72 501-574 191-263 (263)
88 3t6p_A Baculoviral IAP repeat- 98.4 1.8E-07 6.2E-12 100.2 5.5 52 30-85 286-338 (345)
89 4ap4_A E3 ubiquitin ligase RNF 98.4 1.8E-08 6E-13 92.4 -2.2 56 36-91 69-131 (133)
90 2ep8_A Pescadillo homolog 1; A 98.4 8.3E-07 2.8E-11 78.3 8.2 77 485-573 13-100 (100)
91 2ecl_A Ring-box protein 2; RNF 98.4 7.8E-08 2.7E-12 81.5 1.3 49 38-86 14-77 (81)
92 2vje_A E3 ubiquitin-protein li 98.3 1.1E-07 3.7E-12 77.0 0.3 48 37-84 6-56 (64)
93 2y1n_A E3 ubiquitin-protein li 98.3 1.8E-07 6.3E-12 101.0 2.1 52 35-86 328-380 (389)
94 1wim_A KIAA0161 protein; ring 98.3 6.3E-08 2.1E-12 84.3 -1.4 65 38-103 4-83 (94)
95 2bay_A PRE-mRNA splicing facto 98.2 1E-07 3.5E-12 76.5 -0.8 53 39-91 3-56 (61)
96 2vje_B MDM4 protein; proto-onc 98.2 1.8E-07 6.1E-12 75.5 0.2 47 38-84 6-55 (63)
97 1z56_C DNA ligase IV; DNA repa 98.2 5.2E-07 1.8E-11 93.0 3.2 90 485-574 161-261 (264)
98 2ea5_A Cell growth regulator w 98.2 6.9E-07 2.4E-11 73.2 3.1 45 37-85 13-58 (68)
99 1l7b_A DNA ligase; BRCT, autos 98.2 1.9E-06 6.6E-11 74.8 5.7 73 485-563 8-80 (92)
100 3dpl_R Ring-box protein 1; ubi 98.2 4.8E-07 1.6E-11 80.7 1.7 48 38-85 36-101 (106)
101 2jun_A Midline-1; B-BOX, TRIM, 98.2 8.8E-07 3E-11 77.9 3.4 88 38-140 2-98 (101)
102 2ebu_A Replication factor C su 98.0 2.4E-05 8.1E-10 70.3 9.4 84 485-574 23-107 (112)
103 2k6g_A Replication factor C su 98.0 2.3E-05 7.9E-10 70.1 9.1 74 486-564 34-108 (109)
104 3pc7_A DNA ligase 3; DNA repai 97.8 1.4E-05 4.9E-10 68.6 5.0 67 487-569 19-87 (88)
105 4a0k_B E3 ubiquitin-protein li 97.8 2.4E-06 8.2E-11 77.5 0.1 47 39-85 48-112 (117)
106 1l0b_A BRCA1; TANDEM-BRCT, thr 97.8 1.8E-05 6.1E-10 79.4 5.0 89 485-575 118-213 (229)
107 2cok_A Poly [ADP-ribose] polym 97.7 6E-05 2.1E-09 67.8 6.7 81 487-571 13-104 (113)
108 1t15_A Breast cancer type 1 su 97.6 2.6E-05 9E-10 77.2 3.6 89 485-575 116-211 (214)
109 3u3z_A Microcephalin; DNA repa 97.6 2.2E-05 7.5E-10 77.7 2.4 73 489-574 125-197 (199)
110 2d8s_A Cellular modulator of i 97.5 2.2E-05 7.6E-10 66.3 1.2 50 37-86 13-71 (80)
111 2etx_A Mediator of DNA damage 97.2 0.00025 8.4E-09 70.5 5.2 85 485-575 116-202 (209)
112 1kzy_C Tumor suppressor P53-bi 97.2 0.00045 1.5E-08 71.1 7.2 85 486-574 157-251 (259)
113 2nte_A BARD-1, BRCA1-associate 97.0 0.00022 7.6E-09 70.6 2.2 81 485-570 105-209 (210)
114 4id3_A DNA repair protein REV1 96.2 0.008 2.7E-07 51.0 6.5 38 596-634 4-41 (92)
115 2ct0_A Non-SMC element 1 homol 96.1 0.0028 9.7E-08 52.5 2.9 47 39-85 15-64 (74)
116 2ebw_A DNA repair protein REV1 96.0 0.0088 3E-07 51.5 6.0 38 596-634 9-46 (97)
117 3vk6_A E3 ubiquitin-protein li 96.0 0.0019 6.5E-08 56.1 1.2 45 41-85 3-49 (101)
118 3pc6_A DNA repair protein XRCC 95.9 0.013 4.4E-07 51.8 6.3 50 596-657 4-53 (104)
119 3al2_A DNA topoisomerase 2-bin 95.8 0.011 3.6E-07 59.9 6.1 77 497-575 147-229 (235)
120 2k6g_A Replication factor C su 95.5 0.047 1.6E-06 48.5 8.7 48 598-657 31-78 (109)
121 1vyx_A ORF K3, K3RING; zinc-bi 95.3 0.005 1.7E-07 48.8 1.4 49 37-85 4-59 (60)
122 2l42_A DNA-binding protein RAP 95.1 0.013 4.4E-07 50.6 3.3 54 596-658 8-65 (106)
123 2vxb_A DNA repair protein RHP9 95.0 0.019 6.3E-07 58.3 4.9 60 500-569 180-241 (241)
124 3l46_A Protein ECT2; alternati 94.9 0.033 1.1E-06 49.8 5.7 45 589-634 11-55 (112)
125 3m62_A Ubiquitin conjugation f 94.9 0.013 4.3E-07 69.7 3.7 70 34-103 886-956 (968)
126 3sqd_A PAX-interacting protein 94.8 0.055 1.9E-06 54.0 7.6 83 486-574 124-218 (219)
127 3pc7_A DNA ligase 3; DNA repai 94.6 0.016 5.4E-07 49.6 2.6 39 594-634 11-49 (88)
128 3k1l_B Fancl; UBC, ring, RWD, 94.6 0.0062 2.1E-07 64.4 0.1 49 37-85 306-373 (381)
129 1l7b_A DNA ligase; BRCT, autos 94.5 0.025 8.6E-07 48.8 3.7 49 597-658 5-53 (92)
130 1dgs_A DNA ligase; AMP complex 94.3 0.0075 2.6E-07 69.6 0.0 73 486-564 589-661 (667)
131 1wf6_A Similar to S.pombe -RAD 94.2 0.069 2.3E-06 48.9 6.3 37 597-634 38-74 (132)
132 2ebu_A Replication factor C su 94.1 0.1 3.4E-06 46.7 6.8 48 598-657 21-68 (112)
133 3l3e_A DNA topoisomerase 2-bin 93.9 0.072 2.5E-06 46.7 5.6 37 597-634 13-49 (107)
134 2ep8_A Pescadillo homolog 1; A 93.8 0.052 1.8E-06 47.5 4.3 35 596-633 9-43 (100)
135 2l42_A DNA-binding protein RAP 93.8 0.039 1.3E-06 47.7 3.3 67 498-578 30-98 (106)
136 2d8m_A DNA-repair protein XRCC 93.6 0.11 3.7E-06 47.3 6.3 37 597-634 20-56 (129)
137 2owo_A DNA ligase; protein-DNA 93.4 0.014 4.9E-07 67.3 0.0 71 486-562 599-670 (671)
138 2cok_A Poly [ADP-ribose] polym 93.1 0.13 4.4E-06 46.0 5.7 46 598-656 9-54 (113)
139 2cou_A ECT2 protein; BRCT doma 92.9 0.1 3.6E-06 46.1 4.8 36 597-633 10-45 (109)
140 1fre_A Nuclear factor XNF7; zi 92.8 0.057 1.9E-06 39.1 2.5 28 112-139 12-40 (42)
141 2d8u_A Ubiquitin ligase TRIM63 92.4 0.078 2.7E-06 42.0 3.1 29 112-140 18-47 (64)
142 2dja_A Midline-2; tripartite m 91.7 0.068 2.3E-06 44.8 2.0 34 107-140 19-57 (84)
143 2did_A Tripartite motif protei 91.5 0.068 2.3E-06 40.8 1.7 34 107-140 9-46 (53)
144 4gns_A Chitin biosynthesis pro 90.4 0.69 2.4E-05 43.8 7.7 88 487-576 164-255 (290)
145 2yrg_A Tripartite motif-contai 90.1 0.11 3.7E-06 40.8 1.6 33 108-140 16-52 (59)
146 3ddt_A E3 ubiquitin-protein li 89.5 0.081 2.8E-06 39.5 0.5 29 112-140 16-45 (48)
147 4gne_A Histone-lysine N-methyl 88.7 0.24 8.2E-06 43.8 3.0 48 396-448 14-61 (107)
148 2kwj_A Zinc finger protein DPF 87.5 0.75 2.6E-05 40.9 5.5 94 328-447 2-106 (114)
149 2egm_A Tripartite motif-contai 85.1 0.13 4.4E-06 40.1 -0.7 33 108-140 20-56 (57)
150 3v43_A Histone acetyltransfera 84.9 0.33 1.1E-05 43.1 1.7 92 327-445 5-108 (112)
151 2ro1_A Transcription intermedi 84.6 1.8 6E-05 42.0 7.0 48 398-450 3-50 (189)
152 2lri_C Autoimmune regulator; Z 84.2 0.53 1.8E-05 37.9 2.5 50 397-451 12-61 (66)
153 2puy_A PHD finger protein 21A; 84.0 0.51 1.7E-05 37.0 2.3 47 397-448 5-51 (60)
154 1xwh_A Autoimmune regulator; P 83.7 0.59 2E-05 37.4 2.6 51 395-450 6-56 (66)
155 1fp0_A KAP-1 corepressor; PHD 83.7 0.99 3.4E-05 38.4 4.1 50 395-449 23-72 (88)
156 2yql_A PHD finger protein 21A; 83.7 0.6 2.1E-05 36.0 2.6 31 396-428 8-38 (56)
157 2csv_A Tripartite motif protei 83.7 0.38 1.3E-05 39.0 1.5 33 107-140 19-55 (72)
158 3oq4_A DBF4, protein DNA52; DD 83.2 3.2 0.00011 37.8 7.5 73 499-574 31-105 (134)
159 3oq0_A DBF4, protein DNA52; DD 82.6 4 0.00014 37.9 8.0 93 478-573 17-121 (151)
160 2l5u_A Chromodomain-helicase-D 81.5 0.58 2E-05 36.9 1.7 47 396-447 10-56 (61)
161 2yvr_A Transcription intermedi 81.4 0.39 1.3E-05 36.0 0.6 28 112-140 16-44 (50)
162 3o36_A Transcription intermedi 81.3 4 0.00014 39.1 8.1 49 398-451 5-53 (184)
163 2rsd_A E3 SUMO-protein ligase 80.9 0.76 2.6E-05 37.0 2.3 30 397-427 10-42 (68)
164 3qbz_A DDK kinase regulatory s 80.7 3 0.0001 39.1 6.5 73 487-559 62-148 (160)
165 2lv9_A Histone-lysine N-methyl 79.3 0.57 2E-05 40.6 1.1 48 398-452 29-79 (98)
166 1wew_A DNA-binding family prot 78.6 0.88 3E-05 37.6 2.0 34 395-429 14-50 (78)
167 1mm2_A MI2-beta; PHD, zinc fin 78.4 1.7 5.7E-05 34.2 3.5 48 396-448 8-55 (61)
168 2g6q_A Inhibitor of growth pro 78.4 0.94 3.2E-05 35.9 2.0 39 390-429 4-45 (62)
169 2ko5_A Ring finger protein Z; 76.1 0.63 2.2E-05 39.8 0.4 48 37-86 26-74 (99)
170 3u5n_A E3 ubiquitin-protein li 74.6 4.3 0.00015 39.7 6.1 48 397-449 7-54 (207)
171 3nw0_A Non-structural maintena 73.5 1.5 5E-05 44.2 2.4 47 39-85 180-229 (238)
172 1f62_A Transcription factor WS 73.1 1.3 4.5E-05 33.3 1.5 44 399-447 2-48 (51)
173 3i2d_A E3 SUMO-protein ligase 72.7 1.8 6.3E-05 46.2 3.0 65 35-100 245-315 (371)
174 3pa6_A Microcephalin; BRCT dom 72.3 8.3 0.00028 33.7 6.8 39 597-635 5-46 (107)
175 3l41_A BRCT-containing protein 72.2 2.7 9.4E-05 41.6 4.0 73 497-572 128-212 (220)
176 4gne_A Histone-lysine N-methyl 70.4 4.7 0.00016 35.5 4.6 90 326-448 14-104 (107)
177 2k2w_A Recombination and DNA r 69.5 5.1 0.00018 35.8 4.7 35 597-634 11-45 (118)
178 2jmi_A Protein YNG1, ING1 homo 68.0 3 0.0001 35.6 2.8 52 388-445 17-71 (90)
179 1we9_A PHD finger family prote 68.0 3 0.0001 32.8 2.7 48 397-448 6-57 (64)
180 3ef0_A RNA polymerase II subun 67.8 5 0.00017 43.0 5.2 38 597-634 280-320 (372)
181 2xb1_A Pygopus homolog 2, B-ce 67.4 2.9 9.8E-05 36.6 2.6 51 397-448 3-60 (105)
182 4fo9_A E3 SUMO-protein ligase 66.9 3.3 0.00011 44.1 3.5 64 35-99 211-280 (360)
183 2coe_A Deoxynucleotidyltransfe 66.8 7.6 0.00026 34.8 5.4 38 597-634 18-56 (120)
184 2yt5_A Metal-response element- 64.4 3.9 0.00013 32.3 2.7 30 397-428 6-40 (66)
185 2e6r_A Jumonji/ARID domain-con 64.0 3.6 0.00012 35.1 2.5 46 398-448 17-65 (92)
186 3c6w_A P28ING5, inhibitor of g 63.3 3.3 0.00011 32.3 2.0 33 396-429 8-43 (59)
187 1wen_A Inhibitor of growth fam 62.8 4.2 0.00014 33.0 2.6 46 396-447 15-63 (71)
188 2k16_A Transcription initiatio 61.4 3.4 0.00012 33.5 1.9 45 398-447 19-66 (75)
189 2vnf_A ING 4, P29ING4, inhibit 61.3 3.8 0.00013 32.0 2.0 33 396-429 9-44 (60)
190 2kgg_A Histone demethylase jar 60.2 4.9 0.00017 30.4 2.4 30 399-429 4-37 (52)
191 2l43_A N-teminal domain from h 60.0 3.3 0.00011 35.0 1.6 45 397-448 25-74 (88)
192 1weu_A Inhibitor of growth fam 59.9 4.3 0.00015 34.7 2.3 46 396-447 35-83 (91)
193 2ku3_A Bromodomain-containing 59.4 4.1 0.00014 33.1 1.9 31 397-429 16-51 (71)
194 1wee_A PHD finger family prote 58.8 4.9 0.00017 32.5 2.3 46 395-446 14-63 (72)
195 2owo_A DNA ligase; protein-DNA 58.1 2.1 7.2E-05 49.4 0.0 49 598-658 596-644 (671)
196 1dgs_A DNA ligase; AMP complex 57.3 2.2 7.6E-05 49.2 0.0 47 599-658 587-633 (667)
197 2ysm_A Myeloid/lymphoid or mix 56.8 4.7 0.00016 35.3 2.1 45 397-446 7-54 (111)
198 2lbm_A Transcriptional regulat 55.6 5.1 0.00017 37.1 2.1 55 363-429 38-93 (142)
199 3asl_A E3 ubiquitin-protein li 55.6 5.8 0.0002 32.0 2.3 45 399-447 20-67 (70)
200 2vpb_A Hpygo1, pygopus homolog 55.6 4.7 0.00016 32.1 1.7 31 398-429 9-43 (65)
201 1wem_A Death associated transc 55.1 4.5 0.00016 33.0 1.6 49 397-448 16-69 (76)
202 2e6s_A E3 ubiquitin-protein li 53.3 7.1 0.00024 32.2 2.5 28 399-428 28-58 (77)
203 1wev_A Riken cDNA 1110020M19; 52.4 7.6 0.00026 32.7 2.6 49 397-448 16-71 (88)
204 3ef1_A RNA polymerase II subun 51.9 13 0.00045 40.6 5.0 37 598-634 351-390 (442)
205 2jw5_A DNA polymerase lambda; 51.4 3.8 0.00013 35.8 0.6 38 597-634 9-47 (106)
206 3o70_A PHD finger protein 13; 50.9 8 0.00027 31.0 2.3 30 397-429 19-51 (68)
207 2ysm_A Myeloid/lymphoid or mix 50.1 9.3 0.00032 33.3 2.9 91 326-445 6-100 (111)
208 3ql9_A Transcriptional regulat 49.1 7.1 0.00024 35.5 2.0 34 394-429 54-87 (129)
209 1wil_A KIAA1045 protein; ring 47.0 8 0.00027 32.4 1.8 35 397-434 15-51 (89)
210 2ri7_A Nucleosome-remodeling f 44.7 5.9 0.0002 37.4 0.7 32 394-428 5-40 (174)
211 1wep_A PHF8; structural genomi 41.9 9.7 0.00033 31.2 1.6 49 397-450 12-64 (79)
212 3shb_A E3 ubiquitin-protein li 39.8 14 0.00047 30.5 2.1 28 399-428 28-58 (77)
213 2cs3_A Protein C14ORF4, MY039 38.7 6.3 0.00022 32.7 -0.1 43 37-79 13-64 (93)
214 2dun_A POL MU, DNA polymerase 38.4 16 0.00053 33.4 2.4 37 598-634 9-46 (133)
215 3o7a_A PHD finger protein 13 v 37.9 19 0.00066 26.9 2.6 30 398-429 4-36 (52)
216 3mjh_B Early endosome antigen 30.6 7.5 0.00026 27.0 -0.8 14 39-52 5-18 (34)
217 2gmg_A Hypothetical protein PF 29.6 31 0.0011 30.1 2.8 30 49-83 65-94 (105)
218 3ask_A E3 ubiquitin-protein li 29.1 22 0.00075 35.3 2.0 47 397-447 174-223 (226)
219 2ct7_A Ring finger protein 31; 27.9 26 0.0009 29.1 2.0 29 41-69 27-61 (86)
220 2d8s_A Cellular modulator of i 27.6 88 0.003 25.5 5.2 57 322-406 10-67 (80)
221 2jmo_A Parkin; IBR, E3 ligase, 27.2 34 0.0012 28.0 2.6 37 39-77 25-74 (80)
222 2jrp_A Putative cytoplasmic pr 26.7 13 0.00044 31.0 -0.1 41 40-85 3-43 (81)
223 3rsn_A SET1/ASH2 histone methy 26.2 49 0.0017 31.5 3.8 46 402-449 9-59 (177)
224 1x4i_A Inhibitor of growth pro 25.4 31 0.001 27.7 1.9 31 398-429 7-40 (70)
225 1wem_A Death associated transc 25.3 61 0.0021 26.0 3.7 33 326-374 15-47 (76)
226 2jne_A Hypothetical protein YF 24.2 14 0.00049 31.7 -0.3 40 40-84 33-72 (101)
227 3lqh_A Histone-lysine N-methyl 23.9 37 0.0013 32.5 2.5 30 398-429 3-39 (183)
228 1vm6_A DHPR, dihydrodipicolina 21.7 41 0.0014 33.4 2.4 34 485-518 77-110 (228)
229 3a1b_A DNA (cytosine-5)-methyl 21.1 40 0.0014 31.6 2.0 36 394-429 76-111 (159)
230 2ct0_A Non-SMC element 1 homol 20.8 31 0.0011 28.0 1.1 29 398-428 16-45 (74)
No 1
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.95 E-value=6.4e-28 Score=244.99 Aligned_cols=151 Identities=25% Similarity=0.456 Sum_probs=134.2
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
...++++|++|||++++++.|.++++.+||.+..+|++.|||||+.+++++.++||+||+.|++.|+|||+++||.+|++
T Consensus 3 ~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~~ 82 (229)
T 1l0b_A 3 RAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQ 82 (229)
T ss_dssp CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHHT
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999877777999999999999999999999999999
Q ss_pred hCCCCCCCCcccccCCCCC--CCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchh
Q 038256 563 AMNPVGEEPYEINLDNHGC--EEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGEL 637 (691)
Q Consensus 563 ~g~~vdEe~yei~~d~~~~--~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~ 637 (691)
+|+++||++|++.++.... ..+|+++|... .+||.|+.|||+|.+..+.++.|++||+++||+|+...+..
T Consensus 83 ~~~~~~e~~y~~~~~~~~~~~~~~~~~~r~~~----~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~ 155 (229)
T 1l0b_A 83 ERKLLSVHEFEVKGDVVTGSNHQGPRRSRESQ----EKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLL 155 (229)
T ss_dssp TTSCCCSGGGBCCEETTTCSSSCHHHHHHHHC------CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCG
T ss_pred CCCcCChHHeEeccccccccccccchhhhhhh----hhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccc
Confidence 9999999999998765432 35677777643 57999999999998888888999999999999999998765
No 2
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.95 E-value=2.4e-27 Score=238.12 Aligned_cols=142 Identities=37% Similarity=0.629 Sum_probs=131.4
Q ss_pred ccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhCC
Q 038256 486 KEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMN 565 (691)
Q Consensus 486 ~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~ 565 (691)
+++||++|||++++++.|.++++.+||.+..+|+++|||||+.++ ...||+|||.|++.|+|||+++||.+|+++|+
T Consensus 1 ~~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~---~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~ 77 (210)
T 2nte_A 1 GPLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGD---AVQSTLKCMLGILNGCWILKFEWVKACLRRKV 77 (210)
T ss_dssp CCCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSS---SCCCSHHHHHHHHTTCEEEETHHHHHHHHHTS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCC---CcchHHHHHHHHhcCCEEecHHHHHHHHHcCC
Confidence 468999999999999999999999999999999999999999874 25799999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCCCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchh
Q 038256 566 PVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGEL 637 (691)
Q Consensus 566 ~vdEe~yei~~d~~~~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~ 637 (691)
++||++|++. ++|+++|++..+..++||+|+.||+++.+..+.++.|++||+++||+|+.+.|.+
T Consensus 78 ~~~e~~y~~~-------~~~~~~r~~~~~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~ 142 (210)
T 2nte_A 78 CEQEEKYEIP-------EGPRRSRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKP 142 (210)
T ss_dssp CCCGGGTBCT-------THHHHHHHHHHTTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCG
T ss_pred cCChhhccCC-------CCChhhhhccccccccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCC
Confidence 9999999994 4788999887777788999999999998888888999999999999999888765
No 3
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.95 E-value=3.5e-27 Score=236.65 Aligned_cols=149 Identities=27% Similarity=0.448 Sum_probs=132.4
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
.++++|++|||++++++.|.++++++||.+.++|+++|||||+.+++++.++||+|||.|++.|+|||+++||.+|+++|
T Consensus 2 ~~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 2 NKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp --CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 36889999999999999999999999999999999999999999987777899999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCC--CCCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCch
Q 038256 565 NPVGEEPYEINLDNHG--CEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGE 636 (691)
Q Consensus 565 ~~vdEe~yei~~d~~~--~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~ 636 (691)
+++||++|++.++... ...+|+++|.+ ..++||.|+.|||.+.+..+.++.|.+||+++||+|+...+.
T Consensus 82 ~~~~e~~y~~~~~~~~~~~~~~~~~~r~~---~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~ 152 (214)
T 1t15_A 82 KMLNEHDFEVRGDVVNGRNHQGPKRARES---QDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSS 152 (214)
T ss_dssp SCCCGGGGBCCEETTTBTTCCHHHHHHTC---TTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGG
T ss_pred CcCChHHeEeeccccccccccchhhHhhc---CCCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccc
Confidence 9999999999876543 23467777653 456799999999999888778899999999999999997655
No 4
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.93 E-value=4.4e-26 Score=233.01 Aligned_cols=146 Identities=21% Similarity=0.329 Sum_probs=123.3
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEee--ccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSK--FWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~--~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
.+.++|++|||++++++.+.++++.|||.+.. +|+++|||||+++ ..||+|||+||+.|+|||+++||.+|++
T Consensus 7 ~~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~-----~~RT~K~l~aia~G~wIvs~~wl~~s~~ 81 (235)
T 3al2_A 7 KKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGH-----PLRNEKYLASVAAGKWVLHRSYLEACRT 81 (235)
T ss_dssp -CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESS-----CCCSHHHHHHHHTTCEEECTHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECC-----CCCCHHHHHHHHcCCcCccHHHHHHHHH
Confidence 46888999999999999999999999999976 6889999999995 5799999999999999999999999999
Q ss_pred hCCCCCCCCcccccCCC-------C-----CCCCchhhhhhhhccC-----CCCCCCceEEEecCcCcccHHHHHHHHHh
Q 038256 563 AMNPVGEEPYEINLDNH-------G-----CEEGPKTGRLRALNKA-----PKLFDGLSFYFSGNFMLGYKEDLQSLVIT 625 (691)
Q Consensus 563 ~g~~vdEe~yei~~d~~-------~-----~~~gp~~~R~~~~~~~-----~~LF~G~~f~l~g~~~~~~k~~L~~LI~~ 625 (691)
+|+|+||++||+.++.. + ...+|+++|.+..... ++||+|+.|||+++ .+..+.|++||++
T Consensus 82 ~g~~l~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~~--~~~~~~l~~ii~a 159 (235)
T 3al2_A 82 AGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVD--QSREAGFKRLLQS 159 (235)
T ss_dssp HTSCCCSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEECC--HHHHHHHHHHHHH
T ss_pred cCCCCChhceeecCcchhccccCCChhhhHHHHHHHHHHHHHHhcccccccCCCCCCcEEEEecC--CCcHHHHHHHHHc
Confidence 99999999999976421 1 1236778886532221 68999999999985 3455799999999
Q ss_pred CCCEEEecCchh
Q 038256 626 AGGTIWKSEGEL 637 (691)
Q Consensus 626 ~GG~Vl~~~~~~ 637 (691)
|||+|+...+..
T Consensus 160 gGg~vl~~~~~~ 171 (235)
T 3al2_A 160 GGAKVLPGHSVP 171 (235)
T ss_dssp TTCEECSSCCGG
T ss_pred CCcEEecCCCCC
Confidence 999999887653
No 5
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.93 E-value=2e-26 Score=233.14 Aligned_cols=166 Identities=16% Similarity=0.232 Sum_probs=131.3
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
.+...++|++|||++.+++.+.++++.+||.+.+++ .+|||||+++ ..||+|||.|++.|+|||+++||.+|++
T Consensus 12 ~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~-----~~rT~K~l~A~~~g~~IVs~~Wl~~c~~ 85 (219)
T 3sqd_A 12 TPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASK-----VTRTVKFLTAISVVKHIVTPEWLEECFR 85 (219)
T ss_dssp CGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSS-----CCCCHHHHHHTTTCSEEECHHHHHHHHH
T ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECC-----CCCCHHHHHHHHcCCCEecHHHHHHHHH
Confidence 356789999999999999999999999999999997 7899999984 5899999999999999999999999999
Q ss_pred hCCCCCCCCcccccCCCCCCCCc--hhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhh
Q 038256 563 AMNPVGEEPYEINLDNHGCEEGP--KTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQ 640 (691)
Q Consensus 563 ~g~~vdEe~yei~~d~~~~~~gp--~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~ 640 (691)
+|+++||++|++.++......+. .....++ ..++||.|+.||+++.+.++ ++.|++||+++||+|+.+.|.....
T Consensus 86 ~~~~l~e~~y~l~d~~~e~~~~~~l~~~l~ra--~~~~LF~G~~f~it~~~~~~-~~~l~~lI~~~GG~v~~~~p~~~~~ 162 (219)
T 3sqd_A 86 CQKFIDEQNYILRDAEAEVLFSFSLEESLKRA--HVSPLFKAKYFYITPGICPS-LSTMKAIVECAGGKVLSKQPSFRKL 162 (219)
T ss_dssp HTSCCCSGGGBCCCHHHHHHTTCCHHHHHHHH--HHSCTTTTEEEEECTTCSSC-HHHHHHHHHHTTCEEESSCCCHHHH
T ss_pred cCCCCChHhccCCCchhhhhcCCChHHHhhhh--ccccccCCcEEEEeCCCCCC-HHHHHHHHHHCCCEEECCCCchHHh
Confidence 99999999999976532111111 1111111 24679999999999987665 6899999999999999999987554
Q ss_pred hcCCCCCCCceEEEEeC
Q 038256 641 CRNDETAPSKVLVVYNL 657 (691)
Q Consensus 641 ~~~~~~~~~~~~IV~~~ 657 (691)
.+...+.....+||.+.
T Consensus 163 ~~~~~~~~~~~~ivis~ 179 (219)
T 3sqd_A 163 MEHKQNSSLSEIILISC 179 (219)
T ss_dssp HHHHHCTTSCEEEEEEC
T ss_pred hhhhcccCCCCEEEEec
Confidence 43221233334555553
No 6
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.92 E-value=2.9e-25 Score=221.54 Aligned_cols=140 Identities=22% Similarity=0.310 Sum_probs=117.8
Q ss_pred ccEEEEEcCCCHHHHHHHHHHHhhcCc-cEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 486 KEWVFCGSALSVEEKLLLVRFGNMIGV-PVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 486 ~~~vi~~Sgls~~ek~~l~~~~~~lG~-~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
...+|++|||++++++.|.+++..+|| .++.++++.|||||++++ .||+|||.|+++|+|||+++||.+|+++|
T Consensus 10 ~~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~-----~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g 84 (199)
T 3u3z_A 10 PTRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKP-----LRTLNVLLGIARGCWVLSYDWVLWSLELG 84 (199)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSC-----CCBHHHHHHHHTTCEEEETHHHHHHHHHT
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCC-----CCCHHHHHHHHCCCcEEeHHHHHHHhhCC
Confidence 467899999999999999999999976 677899999999999753 79999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCchhhhhhh----hccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 565 NPVGEEPYEINLDNHGCEEGPKTGRLRA----LNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 565 ~~vdEe~yei~~d~~~~~~gp~~~R~~~----~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
+|+||++|++.++... ++ ..|+.+ ....++||.|+.||+.+.+..++++.|++||+++||+|+...
T Consensus 85 ~~l~e~~y~~~~~~~~---~~-~~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~ 154 (199)
T 3u3z_A 85 HWISEEPFELSHHFPA---AP-LCRSECHLSAGPYRGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVP 154 (199)
T ss_dssp SCCCSGGGBCTTTCTH---HH-HHHHHHHHCSSSCCCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSG
T ss_pred CCCChhhccccCCccc---cc-cchhhhhhhcccccchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccC
Confidence 9999999999765321 11 233322 234578999997666555777778999999999999999976
No 7
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.89 E-value=2.1e-23 Score=209.58 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=111.1
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
...++|++||+++++ +.++++.+||.+.+++++ +||||+++ +.||+|||.|++.|+|||+++||.+|+++|
T Consensus 10 ~~~~~v~~sG~~~~~---~~~~i~~lGg~~~~~~~~-~THlI~~~-----~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~ 80 (209)
T 2etx_A 10 STAPKVLFTGVVDAR---GERAVLALGGSLAGSAAE-ASHLVTDR-----IRRTVKFLCALGRGIPILSLDWLHQSRKAG 80 (209)
T ss_dssp --CCEEEECSSCCHH---HHHHHHHTTCEECSSTTT-CSEEECSS-----CCCSHHHHHHHHHTCCEECTHHHHHHHHHT
T ss_pred CCCcEEEEeCCCcHH---HHHHHHHCCCEEeCCCCC-ceEEEECC-----CCCCHHHHHHHhcCCccccHHHHHHHHHcC
Confidence 467889999999754 478899999999999884 99999984 579999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCC--CchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCch
Q 038256 565 NPVGEEPYEINLDNHGCEE--GPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGE 636 (691)
Q Consensus 565 ~~vdEe~yei~~d~~~~~~--gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~ 636 (691)
+++||++|++.++...... .......++ ...+||.|+.||+++.+.+ .++.|.+||+++||+|+...+.
T Consensus 81 ~~l~e~~y~~~~~~~~~~~~~~l~~~~~~a--~~~~lF~g~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~ 151 (209)
T 2etx_A 81 FFLPPDEYVVTDPEQEKNFGFSLQDALSRA--RERRLLEGYEIYVTPGVQP-PPPQMGEIISCCGGTYLPSMPR 151 (209)
T ss_dssp SCCCSGGGBCCCHHHHHHTTCCHHHHHHHH--HHSCTTTTCEEEECTTCSS-CHHHHHHHHHHTTCEECSSCCC
T ss_pred CCCChhhccccChhhhhhcCCCHHHHHhhh--hhCCCcCCcEEEEeCCCCC-CHHHHHHHHHHCCCEEECCCCC
Confidence 9999999999643211111 111112221 1247999999999986554 4589999999999999998765
No 8
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.88 E-value=7.3e-24 Score=214.34 Aligned_cols=143 Identities=23% Similarity=0.322 Sum_probs=114.2
Q ss_pred CCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHh
Q 038256 484 KAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEA 563 (691)
Q Consensus 484 ~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~ 563 (691)
..++++|++||+++.+ +.++++.+||.+.+++. +|||||++. ..||+|||+|++.|+|||+++||.+|+++
T Consensus 5 ~~~~~~v~fSG~~~~~---~~~~i~~lGg~v~~~~~-~~THlV~~~-----~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~ 75 (220)
T 3l41_A 5 ASKRVYITFTGYDKKP---SIDNLKKLDMSITSNPS-KCTHLIAPR-----ILRTSKFLCSIPYGPCVVTMDWINSCLKT 75 (220)
T ss_dssp --CCEEEEECSCSSCC---CCGGGGGGTEEECSCTT-TCSEEECSS-----CCCBHHHHHHGGGCCEEECHHHHHHHHHH
T ss_pred ccceEEEEEeccCCCC---CcchHhhcceeeccCch-hhhhhhhhh-----HhhhcceeecCCCCCeEEEhHHHHhhhhh
Confidence 3578999999999865 48999999999999985 699999984 68999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCC--chhhhhhhhccCCCCCCCceEEEecCcC-cccHHHHHHHHHhCCCEEEecCch
Q 038256 564 MNPVGEEPYEINLDNHGCEEG--PKTGRLRALNKAPKLFDGLSFYFSGNFM-LGYKEDLQSLVITAGGTIWKSEGE 636 (691)
Q Consensus 564 g~~vdEe~yei~~d~~~~~~g--p~~~R~~~~~~~~~LF~G~~f~l~g~~~-~~~k~~L~~LI~~~GG~Vl~~~~~ 636 (691)
|+++||++|++.+...+...+ ...+..++..+..+||+|+.||+++.+. .+.++.|.+||+++||+|+. .|.
T Consensus 76 ~~~l~e~~y~l~d~~~e~~~~~~l~~~~~rar~~~~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~-~p~ 150 (220)
T 3l41_A 76 HEIVDEEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCST-LNV 150 (220)
T ss_dssp TSCCCSGGGBCCCHHHHHHHTSCHHHHHHHHHHHCSCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEE-ECS
T ss_pred hhccccCccccCCcHHHhhccccHHHHHHHHHhcCchhhhheeEEEeccccCCCCCceEEEEEecCCcEech-hhH
Confidence 999999999996542211111 1222222223347899999999998773 34578999999999999999 553
No 9
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.78 E-value=8.9e-19 Score=181.49 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=105.0
Q ss_pred HHHHHHHHHhhcCccEeeccCCC------ceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCCCCCc
Q 038256 499 EKLLLVRFGNMIGVPVSKFWKPN------VTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPY 572 (691)
Q Consensus 499 ek~~l~~~~~~lG~~v~~~~~~~------vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe~y 572 (691)
.|+.|.++++.+||.|+.++++. +||||++. ..||.|||.|++.|.|||+++||.+|+++++++|+++|
T Consensus 59 ~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LIa~~-----~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y 133 (259)
T 1kzy_C 59 NKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQ-----HCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNY 133 (259)
T ss_dssp CHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEEESS-----CCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGS
T ss_pred cHHHHHHHHHHCCCEEecCccccccccCCCeEEEcCC-----CCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHc
Confidence 45799999999999999998865 79999985 47999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCc
Q 038256 573 EINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEG 635 (691)
Q Consensus 573 ei~~d~~~~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~ 635 (691)
.+..+... ...|.......++||+|+.||+++...+...+.+..||+++||+|+.+..
T Consensus 134 ~l~~g~s~-----~~~~~~~~~~~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~ 191 (259)
T 1kzy_C 134 LLPAGYSL-----EEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHH 191 (259)
T ss_dssp BCCCEEET-----TTTEEECCCCCCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCCCccc-----ccchhhhccccCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccc
Confidence 99532111 11121112234679999999999987666778999999999999998875
No 10
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.68 E-value=2.4e-16 Score=166.43 Aligned_cols=129 Identities=20% Similarity=0.188 Sum_probs=111.6
Q ss_pred CCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHh
Q 038256 484 KAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEA 563 (691)
Q Consensus 484 ~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~ 563 (691)
.-.+++|++||+.++++..|.+++..+||++..+++.+|||||+++. +|.||..|+..|+|||+++||.+|++.
T Consensus 105 ~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~------~t~Ky~~A~~~gi~IV~~~Wl~~c~~~ 178 (298)
T 3olc_X 105 VMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEV------GSKKYLVAANLKKPILLPSWIKTLWEK 178 (298)
T ss_dssp TTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSS------CSHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred ccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCC------CChHHHHHHHCCCeEeeHHHHHHHHHc
Confidence 45789999999999999999999999999999999999999999963 789999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 564 MNPVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 564 g~~vdEe~yei~~d~~~~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
++.++...|.- . + ......++|.|+.|+++| +.+..++.|+++|+..||++....
T Consensus 179 ~~~~~~~~~~~--~-------~------~~~~~~~~f~g~~i~~tG-~~~~~r~~l~~li~~~GG~~~~~l 233 (298)
T 3olc_X 179 SQEKKITRYTD--I-------N------MEDFKCPIFLGCIICVTG-LCGLDRKEVQQLTVKHGGQYMGQL 233 (298)
T ss_dssp HHTTCCSSGGG--S-------C------GGGGBCCTTTTCEEEECS-CCHHHHHHHHHHHHHTTCEECSSC
T ss_pred CCcCCcccccc--c-------c------cccccccccCCeEEEEeC-CCCccHHHHHHHHHHcCCEEecee
Confidence 99887766521 0 0 011235689999999999 556678999999999999998765
No 11
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.57 E-value=3.3e-15 Score=134.00 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=82.1
Q ss_pred CCCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHH
Q 038256 481 SPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKAC 560 (691)
Q Consensus 481 s~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c 560 (691)
....-.+++|++||+.+..+..|.+++..+||++..+++.+|||||+..+ ...++.||..|...|+|||+++||.+|
T Consensus 12 ~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~---~~~~~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQGR---PNDTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp --CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCC---TTCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred ccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccCCceEEEecCC---CCCCCHHHHHHHHCCCeEecHHHHHHH
Confidence 44566889999999988889999999999999999999999999999542 235789999999999999999999999
Q ss_pred HHhCCCCCCCCcccc
Q 038256 561 MEAMNPVGEEPYEIN 575 (691)
Q Consensus 561 ~~~g~~vdEe~yei~ 575 (691)
+++|+++||++|.++
T Consensus 89 ~~~~~~l~e~~Y~~~ 103 (107)
T 3l3e_A 89 AQECKHLPESLYPHT 103 (107)
T ss_dssp HHHTSCCCGGGCCTT
T ss_pred HHhCCCCchhhCCCC
Confidence 999999999999985
No 12
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.57 E-value=1.7e-14 Score=147.82 Aligned_cols=143 Identities=16% Similarity=0.084 Sum_probs=106.3
Q ss_pred ccEEEEEcCC---CHHHHHHHHHHHhhcCccEeec-----c--CC-------------------CceEEEecCCCCCccc
Q 038256 486 KEWVFCGSAL---SVEEKLLLVRFGNMIGVPVSKF-----W--KP-------------------NVTHVIAATDAKGSCT 536 (691)
Q Consensus 486 ~~~vi~~Sgl---s~~ek~~l~~~~~~lG~~v~~~-----~--~~-------------------~vTHlI~~~~~~~~~~ 536 (691)
.+++|+.|+. +...+..|.++++.+||+|.++ | .. ..||||++. ..
T Consensus 4 ~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~-----~~ 78 (241)
T 2vxb_A 4 DDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDT-----FS 78 (241)
T ss_dssp TTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSS-----CC
T ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCC-----CC
Confidence 5678888887 5678899999999999999886 2 21 359999985 36
Q ss_pred chHHHHHHHHcCCeEeehhHHHHHHHhCCCCCCCCcccccCCCCCCC----------CchhhhhhhhccCCCCCCCceEE
Q 038256 537 RTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEINLDNHGCEE----------GPKTGRLRALNKAPKLFDGLSFY 606 (691)
Q Consensus 537 RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe~yei~~d~~~~~~----------gp~~~R~~~~~~~~~LF~G~~f~ 606 (691)
||.||+.|++.|.+||+++||.+|+++++++|+++|.+......... .+...-.......+.||.|+.||
T Consensus 79 rt~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Lf~g~~i~ 158 (241)
T 2vxb_A 79 RKVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKIL 158 (241)
T ss_dssp CCHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTTEEEECCCCCCCTTSCHHHHHHHCCCTTTTCEEE
T ss_pred CcHHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCCcchhccchhhccccCCChhhHHHHHHhhcCcCCCCcEEE
Confidence 99999999999999999999999999999999999998432111000 11111111122446799999999
Q ss_pred EecCcCc-c-----------cHHHHHHHHHhCCCEEEecC
Q 038256 607 FSGNFML-G-----------YKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 607 l~g~~~~-~-----------~k~~L~~LI~~~GG~Vl~~~ 634 (691)
++..... + ..+.+..|++++||++ .+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~-~~v 197 (241)
T 2vxb_A 159 FIIPEAKSWQKKIENTEQGQKALAHVYHALALGADV-EIR 197 (241)
T ss_dssp ECCCC------------CHHHHHHHHHHHHHTTCEE-ECC
T ss_pred EEeCCCcccccccccccccchHHHHHHHHHHcCCce-ecc
Confidence 9854322 1 1378999999999999 444
No 13
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=130.62 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=82.4
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
....+++|++||+...+|..|.+++..+||+|..+++.+|||||+.. .++.||..|+..|++||+++||.+|++
T Consensus 21 ~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~------~~~~K~~~A~~~gi~IV~~~Wl~d~~~ 94 (129)
T 2d8m_A 21 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAF------ANTPKYSQVLGLGGRIVRKEWVLDCHR 94 (129)
T ss_dssp TTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESS------SSCHHHHHHHHHTCEEEETHHHHHHHH
T ss_pred ccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecC------CCChHHHHHHHCCCcEecHHHHHHHHH
Confidence 34688999999999889999999999999999999999999999985 368899999999999999999999999
Q ss_pred hCCCCCCCCcccccC
Q 038256 563 AMNPVGEEPYEINLD 577 (691)
Q Consensus 563 ~g~~vdEe~yei~~d 577 (691)
+++++||++|.+..+
T Consensus 95 ~~~~l~e~~Y~l~~~ 109 (129)
T 2d8m_A 95 MRRRLPSQRYLMAGP 109 (129)
T ss_dssp TTSCCCGGGGBCSSS
T ss_pred hCCcCChHhcccCCC
Confidence 999999999999654
No 14
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=131.65 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=80.4
Q ss_pred CCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHH
Q 038256 482 PNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACM 561 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~ 561 (691)
..+..+.+||+|||+.++++.|.+++..+||++...++++|||||+..+.. .||..|..+|+.||+++||.+|+
T Consensus 19 ~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~------~K~~~A~~~~i~IVs~eWl~dsi 92 (112)
T 3l46_A 19 VPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIV------KDLPFEPSKKLYVVKQEWFWGSI 92 (112)
T ss_dssp CCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTB------SSCSSCCCSSCEEEEHHHHHHHH
T ss_pred CCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCch------hhHHHHHHCCeeEecHHHHHHHH
Confidence 345688999999999999999999999999999999999999999997532 27888999999999999999999
Q ss_pred HhCCCCCCCCcccc
Q 038256 562 EAMNPVGEEPYEIN 575 (691)
Q Consensus 562 ~~g~~vdEe~yei~ 575 (691)
++|..+||..|.+.
T Consensus 93 ~~g~~ldE~~Y~~~ 106 (112)
T 3l46_A 93 QMDARAGETMYLYE 106 (112)
T ss_dssp HHTSCCCGGGSBCC
T ss_pred HcCCccChhhceec
Confidence 99999999999984
No 15
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=3.6e-14 Score=127.81 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=79.7
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
....+++|++|||+..++..|.+++..+||++...+++.|||||+...+ +.||-.|+.+|+.||+++||.||++
T Consensus 11 ~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~------~~K~~~a~~~~i~IV~~~Wl~dsi~ 84 (109)
T 2cou_A 11 PPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENT------VKDLPFEPSKKLFVVKQEWFWGSIQ 84 (109)
T ss_dssp CTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTT------CSSCSSCCCTTSEEECHHHHHHHHH
T ss_pred CcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCc------cHHHHHHHHCCCeEecHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999998642 3467788899999999999999999
Q ss_pred hCCCCCCCCccccc
Q 038256 563 AMNPVGEEPYEINL 576 (691)
Q Consensus 563 ~g~~vdEe~yei~~ 576 (691)
+|+.+||..|.+..
T Consensus 85 ~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 85 MDARAGETMYLYEK 98 (109)
T ss_dssp TTSCCCGGGTBCCC
T ss_pred cCCcCChhccCCCC
Confidence 99999999999853
No 16
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=7.3e-14 Score=127.18 Aligned_cols=73 Identities=30% Similarity=0.713 Sum_probs=67.2
Q ss_pred hHHhhccccccccccccccccCceec-CCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcC
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 104 (691)
...+..+++++.||||+++|.+|+++ +|||+||..||..|+. ..||.||..+...++.+|..+.++++.+...
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 56778899999999999999999999 9999999999999987 8899999999888999999999999887654
No 17
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=1.1e-13 Score=116.55 Aligned_cols=70 Identities=21% Similarity=0.464 Sum_probs=64.5
Q ss_pred ccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccccCCCchHHHHHHHHHHhcC
Q 038256 35 KLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 104 (691)
.+.+++.||||+++|.+|++++|||+||+.||.+|+.. ...||.||..+...++.+|..+.++++.+...
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999976 78999999999888999999999999988653
No 18
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=8.9e-13 Score=114.23 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=71.9
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccC--CCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHH
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWK--PNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKAC 560 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~--~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c 560 (691)
..-++++|+.+|++...+..|.+++..+||++...++ .++||||+... .+.|+. .+.|..||+++||.+|
T Consensus 6 ~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~------~~~K~~--~~~~~~iV~~~Wi~dc 77 (92)
T 4id3_A 6 KIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNL------PLKKRI--EFANYKVVSPDWIVDS 77 (92)
T ss_dssp CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCC------CHHHHH--HTTTSCEECTHHHHHH
T ss_pred cccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCC------CHHHHH--HcCCCCEEcccHHHHH
Confidence 3457889999997766788999999999999999998 89999999864 234543 3479999999999999
Q ss_pred HHhCCCCCCCCccc
Q 038256 561 MEAMNPVGEEPYEI 574 (691)
Q Consensus 561 ~~~g~~vdEe~yei 574 (691)
+++|+++||++|.+
T Consensus 78 i~~~~~l~e~~Y~l 91 (92)
T 4id3_A 78 VKEARLLPWQNYSL 91 (92)
T ss_dssp HHHTSCCCGGGGBC
T ss_pred HHcCCcCChhhccc
Confidence 99999999999987
No 19
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.35 E-value=1.6e-13 Score=118.10 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=65.7
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhc
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
+..+.+++.||||+++|++||+++|||+||+.||..|+.....||.|+.++...++.+|..+.++++.+..
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~ 78 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMR 78 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999878899999999998999999999999998864
No 20
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.34 E-value=3.1e-13 Score=119.83 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=67.3
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcCC
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGLD 105 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~ 105 (691)
...+.+++.||||+++|.+||+++|||+||+.||..|+.....||.|+.++...++.+|..+.++++.+....
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHHh
Confidence 3467889999999999999999999999999999999988889999999999999999999999999987643
No 21
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.33 E-value=2.1e-11 Score=126.32 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=102.6
Q ss_pred CccEEEEE-cCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcC-CeEeehhHHHHHHH
Q 038256 485 AKEWVFCG-SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNG-NWVLKIDWIKACME 562 (691)
Q Consensus 485 ~~~~vi~~-Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G-~wIVs~~Wl~~c~~ 562 (691)
..+++|+. +|.+...++.|.+++.++||++..+.++.+||||+.. +|.|+-.++.+| .+||+++||.||++
T Consensus 11 F~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~-------~~~k~~~~~~~g~~~IV~p~Wv~Dci~ 83 (263)
T 3ii6_X 11 FEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGS-------ENIRVKNIILSNKHDVVKPAWLLECFK 83 (263)
T ss_dssp TTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSS-------CCHHHHHHHHSCSCCEECHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCC-------CCHHHHHHHhcCCCCEeehHHHHHHHh
Confidence 45667664 7877778999999999999999999888888888873 679999999998 99999999999999
Q ss_pred hCCCCCCCCccc-----------------ccCCCCCC------------------CCchh-----hhhhh---h-ccCCC
Q 038256 563 AMNPVGEEPYEI-----------------NLDNHGCE------------------EGPKT-----GRLRA---L-NKAPK 598 (691)
Q Consensus 563 ~g~~vdEe~yei-----------------~~d~~~~~------------------~gp~~-----~R~~~---~-~~~~~ 598 (691)
++++||.++|.+ -||+|... ..|.. ..+.. . .....
T Consensus 84 ~~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (263)
T 3ii6_X 84 TKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLS 163 (263)
T ss_dssp HTSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGG
T ss_pred cCCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcch
Confidence 999999998854 11222111 00100 01110 0 11235
Q ss_pred CCCCceEEEecC---------cCcccHHHHHHHHHhCCCEEEecC
Q 038256 599 LFDGLSFYFSGN---------FMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 599 LF~G~~f~l~g~---------~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
||+|+.|||.+. ......+.++.+|..+||+|....
T Consensus 164 lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l 208 (263)
T 3ii6_X 164 MFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCL 208 (263)
T ss_dssp TTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSC
T ss_pred hhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCC
Confidence 999999999642 111133467899999999999975
No 22
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.33 E-value=4.6e-13 Score=118.28 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=66.9
Q ss_pred hhccccccccccccccccCceecCCC-CcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcC
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCD-HIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~Cg-HsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 104 (691)
+..+.+++.||||+++|++||+++|| |+||+.||.+|+.....||.|+.++...++.+|..|.++++.+...
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence 45678899999999999999999999 9999999999998888999999999999999999999999998754
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.33 E-value=3.7e-13 Score=116.88 Aligned_cols=72 Identities=24% Similarity=0.594 Sum_probs=64.1
Q ss_pred hhccccccccccccccccCceecC-CCCcccccccccccC--CCCCCCCCCCCc-cccCCCchHHHHHHHHHHhcC
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQ--CESECPLCKSQC-TYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~-CgHsFC~~Ci~~~~~--~~~~CP~Cr~~~-~~~~l~~n~~l~~lv~~~~~~ 104 (691)
...+++++.||||+++|.+|++++ |||+||..||..|+. +...||.||..+ ....+.+|..+.++++.++..
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 457788999999999999999999 999999999999985 357999999997 566899999999999998763
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=2.5e-13 Score=120.30 Aligned_cols=77 Identities=21% Similarity=0.489 Sum_probs=69.8
Q ss_pred hHHhhccccccccccccccccCcee-cCCCCcccccccccccCCC-CCCCCCCCCccccCCCchHHHHHHHHHHhcCCC
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLL-LPCDHIFCNSCIPRSAQCE-SECPLCKSQCTYADLRPLAFLENIIAIYKGLDA 106 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~-l~CgHsFC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~~ 106 (691)
......+++++.|+||+++|.+|++ ++|||+||..||.+|+... ..||.||..+...++..+..+.++++.+..++.
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred ccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999 9999999999999999765 799999999998899999999999998877653
No 25
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.32 E-value=4.9e-13 Score=117.87 Aligned_cols=77 Identities=21% Similarity=0.577 Sum_probs=69.4
Q ss_pred hHHhhccccccccccccccccCceec-CCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcCCC
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGLDA 106 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~~ 106 (691)
...+..+++++.|+||++.|.+|+++ +|||+||..||..|+.....||.||..+...++.+|..+.++++.++....
T Consensus 13 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 13 LAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp GGGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 34467788999999999999999988 899999999999999888999999999988899999999999999876543
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.30 E-value=6.5e-13 Score=122.01 Aligned_cols=74 Identities=24% Similarity=0.502 Sum_probs=66.3
Q ss_pred hHHhhccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccc-cCCCchHHHHHHHHHHhc
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTY-ADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~-~~l~~n~~l~~lv~~~~~ 103 (691)
...+..+++++.|+||+++|.+|++++|||+||..||..|+.. ...||.||..+.. ..+.+|..+.++++.+..
T Consensus 43 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 43 QLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred HHHHHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 4557888999999999999999999999999999999999864 5699999999987 689999999999988753
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.30 E-value=9.6e-14 Score=116.90 Aligned_cols=65 Identities=35% Similarity=0.819 Sum_probs=57.5
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCC-------CCCCCCCCCCccccCCCchHHHHHH
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-------ESECPLCKSQCTYADLRPLAFLENI 97 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-------~~~CP~Cr~~~~~~~l~~n~~l~~l 97 (691)
++.+++++.|+||++.|.+|++++|||+||..||.+|+.. ...||.||..+...++.+|..+.++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 5678889999999999999999999999999999999875 6789999999988888887766544
No 28
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.29 E-value=2.6e-12 Score=112.80 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccC-CCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHH
Q 038256 483 NKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWK-PNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACM 561 (691)
Q Consensus 483 ~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~-~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~ 561 (691)
..-.+++|+.+|+....++.|.+++..+||++..+++ ..+||||+.... +.|+..+ .+.+||+++||.||+
T Consensus 11 ~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~------~~k~~~~--~~~~iV~p~Wl~dci 82 (97)
T 2ebw_A 11 TIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLP------NAKIKEL--KGEKVIRPEWIVESI 82 (97)
T ss_dssp CTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCC------TTHHHHT--SSSCCBCTHHHHHHH
T ss_pred CCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCC------hHHHHHh--cCCCEeChHHHHHHH
Confidence 3457889999999877799999999999999988776 689999998642 3465443 399999999999999
Q ss_pred HhCCCCCCCCccc
Q 038256 562 EAMNPVGEEPYEI 574 (691)
Q Consensus 562 ~~g~~vdEe~yei 574 (691)
++|+++||++|.+
T Consensus 83 ~~~~~l~~~~Y~l 95 (97)
T 2ebw_A 83 KAGRLLSYIPYQL 95 (97)
T ss_dssp HHTSCCCSGGGBS
T ss_pred HcCCccCchHcEe
Confidence 9999999999976
No 29
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=124.64 Aligned_cols=73 Identities=25% Similarity=0.558 Sum_probs=65.9
Q ss_pred HHhhccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCcccc-CCCchHHHHHHHHHHhc
Q 038256 31 LHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYA-DLRPLAFLENIIAIYKG 103 (691)
Q Consensus 31 ~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~-~l~~n~~l~~lv~~~~~ 103 (691)
..+..+++.+.|+||+++|.+|++++|||+||..||..|+.. ...||+||..+... .+.+|..+.++++.+..
T Consensus 70 ~~~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 70 NFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp GHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hHHHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 356778889999999999999999999999999999999975 46899999999887 89999999999998864
No 30
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.25 E-value=2.9e-11 Score=112.47 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=74.8
Q ss_pred CCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHH-HcCCeEeehhHHHHH
Q 038256 482 PNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAI-LNGNWVLKIDWIKAC 560 (691)
Q Consensus 482 ~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Ai-a~G~wIVs~~Wl~~c 560 (691)
...-++++|+++|+....+..|..+++.+||++..++++.|||||+... ..+++-+.+. ..+.+||+++||.+|
T Consensus 38 ~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-----~~~~~~~~~~~~~~~~iV~~~Wv~ds 112 (132)
T 1wf6_A 38 EDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-----DDELKQFWNKSAHRPHVVGAKWLLEC 112 (132)
T ss_dssp TTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-----CSHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred ccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-----hHHHHHHHHhhCCCCeEechHHHHHH
Confidence 3456788999999999999999999999999999999999999999842 2344433332 357899999999999
Q ss_pred HHhCCCCCCCCcccc
Q 038256 561 MEAMNPVGEEPYEIN 575 (691)
Q Consensus 561 ~~~g~~vdEe~yei~ 575 (691)
+++|+++||++|.+.
T Consensus 113 i~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 113 FSKGYMLSEEPYIHS 127 (132)
T ss_dssp HHHSSCCCSGGGBCC
T ss_pred HHcCCcCCHhhccCC
Confidence 999999999999773
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.22 E-value=2.9e-12 Score=114.77 Aligned_cols=71 Identities=28% Similarity=0.591 Sum_probs=64.2
Q ss_pred hhccccccccccccccccCceec-CCCCcccccccccccCCCCCCCCCCCCcccc----CCCchHHHHHHHHHHhc
Q 038256 33 LQKLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQCESECPLCKSQCTYA----DLRPLAFLENIIAIYKG 103 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~----~l~~n~~l~~lv~~~~~ 103 (691)
+..+++++.|+||+++|.+|+++ +|||+||..||..|+.....||.||..+... .+.+|..+.++++.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 56788999999999999999997 9999999999999998889999999998765 67889999999988753
No 32
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.22 E-value=2.4e-11 Score=128.09 Aligned_cols=87 Identities=15% Similarity=0.084 Sum_probs=80.6
Q ss_pred CCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccC-CCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 484 KAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWK-PNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 484 ~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~-~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
.-.+++|++||+...+|+.|.+++..+||++..+++ .++||||+... .+.||..|..+|++||+++||.+|++
T Consensus 199 ~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~------~g~K~~~A~~~gi~IV~~~Wl~dsi~ 272 (298)
T 3olc_X 199 IFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEP------KGQKYECAKRWNVHCVTTQWFFDSIE 272 (298)
T ss_dssp TTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSS------CSHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCC------CchHHHHHHHCCCeEEeHHHHHHHHH
Confidence 456789999999999999999999999999999999 79999999865 46799999999999999999999999
Q ss_pred hCCCCCCCCccccc
Q 038256 563 AMNPVGEEPYEINL 576 (691)
Q Consensus 563 ~g~~vdEe~yei~~ 576 (691)
+|+++||++|.+..
T Consensus 273 ~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 273 KGFCQDESIYKTEP 286 (298)
T ss_dssp HTSCCCGGGSBSCC
T ss_pred CCCCCCchhcCCCC
Confidence 99999999999954
No 33
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.21 E-value=1.6e-11 Score=110.01 Aligned_cols=87 Identities=21% Similarity=0.152 Sum_probs=71.4
Q ss_pred CccEEEEEcCCCH----HHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHH
Q 038256 485 AKEWVFCGSALSV----EEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKAC 560 (691)
Q Consensus 485 ~~~~vi~~Sgls~----~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c 560 (691)
-+++++++...+. ...+.+...+..+||++..+++..|||||+.++ ++.||-.|..+|+.||+++||.+|
T Consensus 8 f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~------~~~~~~~A~~~~i~iV~~~Wv~~C 81 (107)
T 3pa6_A 8 LKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDG------YQSTWDKAQKRGVKLVSVLWVEKC 81 (107)
T ss_dssp TTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESC------CHHHHHHHHHHTCEEECHHHHHHH
T ss_pred cCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCC------CChHHHHHhcCCCEEECHHHHHHH
Confidence 3556666654431 124689999999999999999999999999864 345677799999999999999999
Q ss_pred HHhCCCCCCCCcccccC
Q 038256 561 MEAMNPVGEEPYEINLD 577 (691)
Q Consensus 561 ~~~g~~vdEe~yei~~d 577 (691)
+++|+.+||++|.+...
T Consensus 82 ~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 82 RTAGAHIDESLFPAANM 98 (107)
T ss_dssp HHHTSCCCGGGSBCCCT
T ss_pred HHhCccCChhcccCCCC
Confidence 99999999999998543
No 34
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=3.2e-12 Score=111.91 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=62.8
Q ss_pred ccccccccccccccccCceecC-CCCcccccccccccCC------CCCCCC--CCCC-ccccCCCchHHHHHHHHHHhcC
Q 038256 35 KLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQC------ESECPL--CKSQ-CTYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l~-CgHsFC~~Ci~~~~~~------~~~CP~--Cr~~-~~~~~l~~n~~l~~lv~~~~~~ 104 (691)
...+++.||||+++|.+||+++ |||+||+.||..|+.. ...||+ |+.. +...++.+|..|.++++.++..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3567899999999999999996 9999999999999953 478999 9887 8788999999999999999764
Q ss_pred C
Q 038256 105 D 105 (691)
Q Consensus 105 ~ 105 (691)
.
T Consensus 83 ~ 83 (94)
T 2yu4_A 83 R 83 (94)
T ss_dssp C
T ss_pred h
Confidence 3
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=2.2e-12 Score=115.91 Aligned_cols=74 Identities=30% Similarity=0.659 Sum_probs=62.3
Q ss_pred hHHhhccccccccccccccccCceecCCCCcccccccccccCC---CCCCCCCCCCccccCCCchHHHHHHHHHHhc
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC---ESECPLCKSQCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~---~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
...+..+++.+.|+||++.|.+|++++|||+||..||..|+.. ...||.||..+...++.+|..+.++++.+..
T Consensus 12 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 12 QNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred HHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 3446778889999999999999999999999999999999864 3689999999988888887766666666543
No 36
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=1.8e-12 Score=111.78 Aligned_cols=57 Identities=30% Similarity=0.539 Sum_probs=48.6
Q ss_pred HHhccccccCcCCCC--CceeccCccCcccceecccccccCccccccC--------------CceEeccccCCC
Q 038256 392 LARGSKLKCSRCGLK--GAALGCYVRSCRRSYHVPCALEISECRWDTE--------------NFLVLCPVHSSV 449 (691)
Q Consensus 392 ~~r~~~l~C~~C~~~--GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~--------------~~~~~C~~H~~~ 449 (691)
.+.+|+++|++|+++ ||+|+|+.++|.++||++||+++ |+.+.++ .+.+||++|+|.
T Consensus 12 p~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a-Gl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPp 84 (87)
T 2lq6_A 12 PPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA-GLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPP 84 (87)
T ss_dssp CCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH-TCCEEEEEEEECTTTSCEEEEEEEECCGGGSSS
T ss_pred ChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC-CCceEeecccccccCCccccceECeECcCCCCc
Confidence 356789999999975 99999999999999999999998 8765431 367899999984
No 37
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=7.1e-13 Score=112.70 Aligned_cols=65 Identities=32% Similarity=0.895 Sum_probs=57.3
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCC------CCCCCCCCCCccccCCCchHHHHHH
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC------ESECPLCKSQCTYADLRPLAFLENI 97 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~------~~~CP~Cr~~~~~~~l~~n~~l~~l 97 (691)
+..+++++.|+||++.|.+|++++|||+||..||..|+.. ...||.||..+...++.+|..+.++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 5678889999999999999999999999999999998864 7899999999988888887766554
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9.4e-13 Score=111.95 Aligned_cols=65 Identities=37% Similarity=0.898 Sum_probs=57.5
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCC------CCCCCCCCCCccccCCCchHHHHHH
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC------ESECPLCKSQCTYADLRPLAFLENI 97 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~------~~~CP~Cr~~~~~~~l~~n~~l~~l 97 (691)
+..+++.+.|+||++.|.+|+.++|||+||..|+..|+.. ...||.||..+...++.+|..+.++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 5678889999999999999999999999999999998864 7899999999988888888766544
No 39
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=3.8e-12 Score=119.23 Aligned_cols=67 Identities=30% Similarity=0.608 Sum_probs=54.9
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHH
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIY 101 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~ 101 (691)
...++++++|+||++.|.+|++++|||+||..||..|+.....||.||.++... ..+..+.+++..+
T Consensus 47 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~ 113 (138)
T 4ayc_A 47 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKM 113 (138)
T ss_dssp HHHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHH
T ss_pred HHhccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHH
Confidence 455778899999999999999999999999999999999889999999988643 2344455555443
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=112.42 Aligned_cols=70 Identities=23% Similarity=0.545 Sum_probs=60.0
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccc-------cCCCchHHHHHHHHHHh
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTY-------ADLRPLAFLENIIAIYK 102 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~-------~~l~~n~~l~~lv~~~~ 102 (691)
...+++++.|+||+++|.+|++++|||+||..||..|+.. ...||.||..+.. .++..|..+.+++..+.
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred ccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 4466788999999999999999999999999999999975 7899999999864 46777888888777653
No 41
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=101.92 Aligned_cols=57 Identities=33% Similarity=0.860 Sum_probs=50.7
Q ss_pred HhhccccccccccccccccCceecCCCCcccccccccccC---CCCCCCCCCCCccccCC
Q 038256 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ---CESECPLCKSQCTYADL 88 (691)
Q Consensus 32 ~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~---~~~~CP~Cr~~~~~~~l 88 (691)
.+..+++.+.|+||++.|.+|+.++|||+||..||..|+. ....||+||..+...++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3567889999999999999999999999999999999996 46789999999876554
No 42
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.12 E-value=3.7e-11 Score=131.93 Aligned_cols=85 Identities=24% Similarity=0.226 Sum_probs=76.8
Q ss_pred CCccEEEEEcCCCHH----HHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcC-CeEeehhHHH
Q 038256 484 KAKEWVFCGSALSVE----EKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNG-NWVLKIDWIK 558 (691)
Q Consensus 484 ~~~~~vi~~Sgls~~----ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G-~wIVs~~Wl~ 558 (691)
.-.+.+|++||+.+. ++..|.+++..+||++..+++.+|||||+... +|.||..|...| ++||+++||.
T Consensus 352 ~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~------~t~K~~~A~~~g~IkIVs~~WL~ 425 (442)
T 3ef1_A 352 VLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKI------RTEKVKKAVSMGNIKVVKLNWLT 425 (442)
T ss_dssp TSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSC------CCHHHHHHHHHSSSEEEEHHHHH
T ss_pred ccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCC------CCHHHHHHHhcCCCEEEeHHHHH
Confidence 347889999998743 46789999999999999999999999999853 789999999995 8999999999
Q ss_pred HHHHhCCCCCCCCccc
Q 038256 559 ACMEAMNPVGEEPYEI 574 (691)
Q Consensus 559 ~c~~~g~~vdEe~yei 574 (691)
+|+++++.+||.+|.+
T Consensus 426 dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 426 ESLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHHTSCCCGGGTBC
T ss_pred HHHHcCCcCChhcccc
Confidence 9999999999999986
No 43
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.6e-11 Score=104.11 Aligned_cols=67 Identities=21% Similarity=0.614 Sum_probs=56.0
Q ss_pred hccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcC
Q 038256 34 QKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 104 (691)
...++.+.|+||++.|.+|++++|||+||..||.+|+.....||+||..+. ..+.+| ..|++.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~---~~l~~~~~~~ 76 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPA---KELMAKLQKS 76 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEEC---HHHHHHHSSS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcH---HHHHHHHHhh
Confidence 356678899999999999999999999999999999988889999999986 556666 4455555543
No 44
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.3e-11 Score=102.27 Aligned_cols=59 Identities=25% Similarity=0.547 Sum_probs=52.4
Q ss_pred hhccccccccccccccccCceec-CCCCcccccccccccCCCCCCCCCCCCccccCCCch
Q 038256 33 LQKLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 91 (691)
++.+++.+.|+||++.|.+|+++ +|||+||..||..|+.....||+||..+...++..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 56788899999999999999987 999999999999999878899999999987665443
No 45
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=99.09 E-value=3.3e-10 Score=114.16 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=98.8
Q ss_pred CccEEEEEcCCC-HHHHHHHHHHHhhcCccEeeccCC--CceEEEecCCCCCcccchHHHHHHHHcCC--eEeehhHHHH
Q 038256 485 AKEWVFCGSALS-VEEKLLLVRFGNMIGVPVSKFWKP--NVTHVIAATDAKGSCTRTLKVLMAILNGN--WVLKIDWIKA 559 (691)
Q Consensus 485 ~~~~vi~~Sgls-~~ek~~l~~~~~~lG~~v~~~~~~--~vTHlI~~~~~~~~~~RT~K~L~Aia~G~--wIVs~~Wl~~ 559 (691)
.=.+.+++||.. .+..+.=.+..+.+|..|..+++. .|+||||+. ..||.|||.|++.|. +||+++||.+
T Consensus 20 ~~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPk-----ilRT~KFL~sLa~~P~~~il~p~FI~~ 94 (256)
T 3t7k_A 20 NYDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPK-----ILRTEKFLKSLSFEPLKFALKPEFIID 94 (256)
T ss_dssp CCCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSS-----CCCBHHHHHHTTSTTCCEEECTHHHHH
T ss_pred CeeEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCc-----hhhHHHHHHHhccCccceEeCHHHHHH
Confidence 357788888887 321122234456689999999853 799999994 689999999999986 6999999999
Q ss_pred HHHh---CC------CCCCCCcccccCCCCCCCCchhhhhhhhccCCCCCCCc---eEEEecCcCcccHHHHHHHHHhCC
Q 038256 560 CMEA---MN------PVGEEPYEINLDNHGCEEGPKTGRLRALNKAPKLFDGL---SFYFSGNFMLGYKEDLQSLVITAG 627 (691)
Q Consensus 560 c~~~---g~------~vdEe~yei~~d~~~~~~gp~~~R~~~~~~~~~LF~G~---~f~l~g~~~~~~k~~L~~LI~~~G 627 (691)
|++. |+ .+|.++|.+.+...+ ...| ....++||.|+ .++++.+..... +.+.+|+++.|
T Consensus 95 ~Lk~ih~~~~~~~~~~l~~~dY~L~d~~~E-----~l~r---~~~~gkLf~~~~I~ciNls~dI~GG~-e~issIleahG 165 (256)
T 3t7k_A 95 LLKQIHSKKDKLSQININLFDYEINGINES-----IISK---TKLPTKVFERANIRCINLVNDIPGGV-DTIGSVLKAHG 165 (256)
T ss_dssp HHHHHC-------CCCCCSSTTBCTTCCHH-----HHHH---TTSSSCHHHHTTCCEEEEETTCTTCH-HHHHHHHHHTT
T ss_pred HHHHhhcCCcccccccCChhhccCCCcchh-----HHhh---hccccccccCCcceeeeeccCCCCCH-HHHHHHHHHcC
Confidence 9998 77 889999988543221 1122 23447899999 666687655554 89999999999
Q ss_pred CEEEe
Q 038256 628 GTIWK 632 (691)
Q Consensus 628 G~Vl~ 632 (691)
|.=++
T Consensus 166 ~~~~~ 170 (256)
T 3t7k_A 166 IEKIN 170 (256)
T ss_dssp CCEEE
T ss_pred Cceee
Confidence 95433
No 46
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.08 E-value=9.3e-11 Score=127.01 Aligned_cols=85 Identities=22% Similarity=0.205 Sum_probs=76.2
Q ss_pred CCccEEEEEcCCCH----HHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHc-CCeEeehhHHH
Q 038256 484 KAKEWVFCGSALSV----EEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILN-GNWVLKIDWIK 558 (691)
Q Consensus 484 ~~~~~vi~~Sgls~----~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~-G~wIVs~~Wl~ 558 (691)
.-.+.+|++||+.+ .++..+.+++..+||++..+++.+|||||+... +|.|+..|... |++||+++||.
T Consensus 282 ~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~------~t~K~~~A~~~~~I~IV~~~Wl~ 355 (372)
T 3ef0_A 282 VLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKI------RTEKVKKAVSMGNIKVVKLNWLT 355 (372)
T ss_dssp TSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSC------CCHHHHHHHHSSSCCEEEHHHHH
T ss_pred hcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCC------CchHHHHHHhcCCCEEEcHHHHH
Confidence 34778899999863 245799999999999999999999999999853 68999999999 79999999999
Q ss_pred HHHHhCCCCCCCCccc
Q 038256 559 ACMEAMNPVGEEPYEI 574 (691)
Q Consensus 559 ~c~~~g~~vdEe~yei 574 (691)
+|+++++.+||++|.+
T Consensus 356 ~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 356 ESLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHHTTSCCCGGGGBC
T ss_pred HHHHhCCcCChhhcee
Confidence 9999999999999986
No 47
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.5e-11 Score=98.72 Aligned_cols=56 Identities=21% Similarity=0.589 Sum_probs=49.6
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccC-CCCCCCCCCCCccccCC
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ-CESECPLCKSQCTYADL 88 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l 88 (691)
+..+++++.|+||++.+.+|+.++|||+||..||.+|+. ....||.||..+...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 456788999999999999999999999999999999994 57889999999876543
No 48
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.06 E-value=3.3e-11 Score=117.32 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=63.5
Q ss_pred ccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccccCCCchHHHHHHHHHHhcC
Q 038256 35 KLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 104 (691)
.+.+++.||||+++|.+||+++|||+||+.||..|+.. ...||.|+.++...++.+|..+.++++.+...
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999964 44799999999988999999999999988653
No 49
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.06 E-value=2.9e-11 Score=100.84 Aligned_cols=53 Identities=25% Similarity=0.711 Sum_probs=47.4
Q ss_pred hhccccccccccccccccCceecC-CCCcccccccccccCC--CCCCCCCCCCccc
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLP-CDHIFCNSCIPRSAQC--ESECPLCKSQCTY 85 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~-CgHsFC~~Ci~~~~~~--~~~CP~Cr~~~~~ 85 (691)
+..+++++.|+||+++|.+|++++ |||+||..||..|+.. ...||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 567888999999999999999999 9999999999999964 4799999997644
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=4.9e-11 Score=123.50 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=63.0
Q ss_pred ccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccccCCCchHHHHHHHHHHhcC
Q 038256 35 KLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADLRPLAFLENIIAIYKGL 104 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 104 (691)
.+.+.+.||||+++|.+||+++|||+||+.||.+|+.. ...||.|+.++...++.+|..+.++++.+...
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999964 45599999999988999999999999998754
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.05 E-value=2e-11 Score=111.22 Aligned_cols=72 Identities=26% Similarity=0.512 Sum_probs=62.7
Q ss_pred HhhccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccccCCCchHHHHHHHHHHhc
Q 038256 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 32 ~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
++..+++.+.|+||+++|.+|++++|||+||..||..|+.. ...||.||..+...++.++..+.+++..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHcccee
Confidence 35688999999999999999999999999999999999865 3499999999988888888888887776543
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.03 E-value=3.9e-11 Score=115.58 Aligned_cols=71 Identities=30% Similarity=0.681 Sum_probs=61.6
Q ss_pred hhccccccccccccccccCceec-CCCCcccccccccccCC-CCCCCCCCCCcc-ccCCCchHHHHHHHHHHhc
Q 038256 33 LQKLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQC-ESECPLCKSQCT-YADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~l~~n~~l~~lv~~~~~ 103 (691)
...+++.+.|+||+++|.+|+++ +|||+||..||..|+.. ...||.||..+. ...+.+|..+.++++.+..
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 55678889999999999999987 99999999999999975 788999999984 4578899999999998865
No 53
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.3e-09 Score=99.24 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCCCCCccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHH----HHcCCeEeehh
Q 038256 480 SSPNKAKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMA----ILNGNWVLKID 555 (691)
Q Consensus 480 ~s~~~~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~A----ia~G~wIVs~~ 555 (691)
..-+..-.+.|.-.++....++.+.+.++..||+|.+.+++.|||||+.+. ...+..+++.. .+.+..||+.+
T Consensus 18 ~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~---~~~e~~~~l~~~~l~~~~~~~lv~i~ 94 (120)
T 2coe_A 18 DIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENN---SGSDVLEWLQAQKVQVSSQPELLDVS 94 (120)
T ss_dssp CCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC---CHHHHHHHHHHCCCCCSSCCEEEEHH
T ss_pred ccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC---CHHHHHHHHhccccccccccEEeecH
Confidence 344555566677888999999999999999999999999999999999632 33445555542 33478999999
Q ss_pred HHHHHHHhCCCCCCCCccc
Q 038256 556 WIKACMEAMNPVGEEPYEI 574 (691)
Q Consensus 556 Wl~~c~~~g~~vdEe~yei 574 (691)
||.+||++|+++||+.|..
T Consensus 95 Wl~esmk~g~lv~ee~~~~ 113 (120)
T 2coe_A 95 WLIECIGAGKPVEMTGKHQ 113 (120)
T ss_dssp HHHHHHHTTSCCCCSSSSB
T ss_pred HHHHHHHcCCccCcccceE
Confidence 9999999999999986654
No 54
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.01 E-value=6.1e-10 Score=99.08 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=73.6
Q ss_pred CccEEEEEcCCC-HHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHH--HcCCeEeehhHHHHHH
Q 038256 485 AKEWVFCGSALS-VEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAI--LNGNWVLKIDWIKACM 561 (691)
Q Consensus 485 ~~~~vi~~Sgls-~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Ai--a~G~wIVs~~Wl~~c~ 561 (691)
-.++.|++++.. +.+++.|..++.++||.+....+++|||||+..+ .+.++..|. .-+.-+|+|+||.+|+
T Consensus 8 F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~------~d~~~~~a~~~~p~~~~V~P~WI~~Ci 81 (104)
T 3pc6_A 8 FEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQE------WDPNFEEALMENPSLAFVRPRWIYSCN 81 (104)
T ss_dssp TTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSC------CCHHHHHHHTTCTTCEEECHHHHHHHH
T ss_pred hCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCC------CChhHHHHhhhCCCCeEEccHHHHHHH
Confidence 457888899988 6899999999999999999999999999999864 445665555 4468999999999999
Q ss_pred HhCCCCCCCCcccc
Q 038256 562 EAMNPVGEEPYEIN 575 (691)
Q Consensus 562 ~~g~~vdEe~yei~ 575 (691)
+++++|++++|++.
T Consensus 82 ~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 82 EKQKLLPHQLYGVV 95 (104)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred hcCccCCcccceec
Confidence 99999999999984
No 55
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=6.1e-11 Score=95.49 Aligned_cols=48 Identities=38% Similarity=0.988 Sum_probs=43.7
Q ss_pred HhhccccccccccccccccCceecCCCCcccccccccccC---CCCCCCCC
Q 038256 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ---CESECPLC 79 (691)
Q Consensus 32 ~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~---~~~~CP~C 79 (691)
.++.+++++.|+||++.|.+|++++|||+||..||.+|+. ....||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3567889999999999999999999999999999999986 46789998
No 56
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.5e-11 Score=124.42 Aligned_cols=129 Identities=15% Similarity=0.048 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcCccEeeccCCC-----ceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCCCCCcc
Q 038256 499 EKLLLVRFGNMIGVPVSKFWKPN-----VTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYE 573 (691)
Q Consensus 499 ek~~l~~~~~~lG~~v~~~~~~~-----vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe~ye 573 (691)
.|+.|.++++.+||++..+.... .||||+.. .|.|+-.++..|..||+|+||.+|++++++++.++|.
T Consensus 27 ~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~-------~t~k~~~~~~~~~~vV~p~Wv~dci~~~~llp~~~y~ 99 (264)
T 1z56_C 27 TRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK-------TTTECKALIDRGYDILHPNWVLDCIAYKRLILIEPNY 99 (264)
T ss_dssp SCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS-------CCGGGGGGTTTTCCCBCSSTTHHHHSSCSCCCCCSCB
T ss_pred CHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC-------CcHHHHHHHhCCCCEEechHHHHHhhcCCCCCCChHH
Confidence 57899999999999887543322 47888863 5778877788899999999999999999999999985
Q ss_pred ccc-------------CCCCCC----CCchhhh------------------hhhhccCCCCCCCceEEEecCcCcccHHH
Q 038256 574 INL-------------DNHGCE----EGPKTGR------------------LRALNKAPKLFDGLSFYFSGNFMLGYKED 618 (691)
Q Consensus 574 i~~-------------d~~~~~----~gp~~~R------------------~~~~~~~~~LF~G~~f~l~g~~~~~~k~~ 618 (691)
+-. |.++.. .....-+ .........||+|+.|||.+.......+.
T Consensus 100 ~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~lF~g~~~yl~~~~~~~~~~~ 179 (264)
T 1z56_C 100 CFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFSNRIAYVPRRKISTEDDI 179 (264)
T ss_dssp SCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCCSCCCCCCC--------------------
T ss_pred hhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhhhhhhcccccCchhhhCCeEEEEecCCCchhHHH
Confidence 421 111100 0000000 00001234599999999998533445567
Q ss_pred HHHHHHhCCCEEEecC
Q 038256 619 LQSLVITAGGTIWKSE 634 (691)
Q Consensus 619 L~~LI~~~GG~Vl~~~ 634 (691)
|..+|+++||+|+...
T Consensus 180 l~~~i~~~GG~v~~~l 195 (264)
T 1z56_C 180 IEMKIKLFGGKITDQQ 195 (264)
T ss_dssp CHHHHHHHTTSCCCCS
T ss_pred HHHHHHHcCCEEeccc
Confidence 8999999999998654
No 57
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=6.5e-11 Score=107.23 Aligned_cols=71 Identities=28% Similarity=0.698 Sum_probs=57.8
Q ss_pred HhhccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccccCCC-chHHHHHHHHHHh
Q 038256 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADLR-PLAFLENIIAIYK 102 (691)
Q Consensus 32 ~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~-~n~~l~~lv~~~~ 102 (691)
....+++++.||||++.|.+|+.++|||+||..||.+|+.. ...||.||..+...++. ++..+.+++..+.
T Consensus 16 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 16 FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp CCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred hHHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence 34577889999999999999999999999999999999875 77999999999877654 4445555554443
No 58
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.96 E-value=5.3e-11 Score=97.88 Aligned_cols=57 Identities=25% Similarity=0.771 Sum_probs=50.8
Q ss_pred ccccccccccccccccCc-------eecCCCCcccccccccccCCCCCCCCCCCCccccCCCch
Q 038256 35 KLALELKCPLCLNLFSRP-------LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~P-------v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 91 (691)
..++++.|+||++.|.+| +.++|||.||..||.+|+.....||.||..+...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 456788999999999998 899999999999999999888899999999987776654
No 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=3.8e-10 Score=89.01 Aligned_cols=47 Identities=30% Similarity=0.766 Sum_probs=42.1
Q ss_pred ccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcccc
Q 038256 37 ALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYA 86 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~ 86 (691)
+++++|+||++.|.+|++++|||+||..||.. ....||.||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 56789999999999999999999999999987 367899999988654
No 60
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.1e-10 Score=96.40 Aligned_cols=52 Identities=27% Similarity=0.729 Sum_probs=46.9
Q ss_pred ccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcccc
Q 038256 35 KLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYA 86 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~ 86 (691)
...+.+.|+||++.|.+|+.++|||.||..||..|+.....||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4456788999999999999999999999999999998889999999988654
No 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.9e-10 Score=117.26 Aligned_cols=71 Identities=25% Similarity=0.489 Sum_probs=63.4
Q ss_pred hhccccccccccccccccCceec-CCCCcccccccccccCC--CCCCCC--CCCCccccCCCchHHHHHHHHHHhc
Q 038256 33 LQKLALELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQC--ESECPL--CKSQCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~--~~~CP~--Cr~~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
+.....+++||||+++|++||+. .|||+||+.||..+|.. ...||+ |+..+...++.+|..|.++++..+.
T Consensus 175 v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred ecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 34578889999999999999975 99999999999999964 468999 9999999999999999999988754
No 62
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=1.5e-10 Score=93.76 Aligned_cols=54 Identities=24% Similarity=0.635 Sum_probs=46.5
Q ss_pred cccccccccc-cccCc----eecCCCCcccccccccccC-CCCCCCCCCCCccccCCCch
Q 038256 38 LELKCPLCLN-LFSRP----LLLPCDHIFCNSCIPRSAQ-CESECPLCKSQCTYADLRPL 91 (691)
Q Consensus 38 e~l~CpIC~e-~~~~P----v~l~CgHsFC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~n 91 (691)
+++.||||++ +|.+| +.++|||+||..||.+|+. +...||.||..+...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4678999999 99999 5789999999999999964 46789999999988777654
No 63
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.9e-10 Score=98.46 Aligned_cols=54 Identities=31% Similarity=0.842 Sum_probs=48.3
Q ss_pred hhccccccccccccccccC----ceecCCCCcccccccccccCC---CCCCCCCCCCcccc
Q 038256 33 LQKLALELKCPLCLNLFSR----PLLLPCDHIFCNSCIPRSAQC---ESECPLCKSQCTYA 86 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~----Pv~l~CgHsFC~~Ci~~~~~~---~~~CP~Cr~~~~~~ 86 (691)
.+.+++.+.|+||++.|.+ |+.++|||+||..||..|+.. ...||.||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4577889999999999999 999999999999999999864 48999999988664
No 64
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.6e-10 Score=89.87 Aligned_cols=47 Identities=36% Similarity=1.003 Sum_probs=42.3
Q ss_pred hhccccccccccccccccCceecCCCCccccccccccc---CCCCCCCCC
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSA---QCESECPLC 79 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~---~~~~~CP~C 79 (691)
++.+++.+.|+||++.|.+|++++|||+||..||.+|+ .....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 55778899999999999999999999999999999995 357889988
No 65
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.89 E-value=2.1e-10 Score=102.60 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=65.2
Q ss_pred cCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHH--HHcCCeEeehhHHHHHHHhCCCCCCC
Q 038256 493 SALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMA--ILNGNWVLKIDWIKACMEAMNPVGEE 570 (691)
Q Consensus 493 Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~A--ia~G~wIVs~~Wl~~c~~~g~~vdEe 570 (691)
.++....++...+.++.+||+++++++++|||||+.++ ....+.+++|.+ +..+..||+++|+.+|++++++|||+
T Consensus 22 ~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~--~s~~~~l~~l~~~~l~~~~~iV~~~Wv~dci~~~~llde~ 99 (106)
T 2jw5_A 22 TGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEG--MDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVA 99 (106)
T ss_dssp TTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSS--SCHHHHHHHTTCSSCCSSCEEEEHHHHHHHHHTCSCCCGG
T ss_pred cCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCC--CCHHHHHHHHhhcccCCCcEEecCchHHHHHhcCcccCcc
Confidence 34444456677888999999999999999999999753 235677777764 44567999999999999999999999
Q ss_pred Cccc
Q 038256 571 PYEI 574 (691)
Q Consensus 571 ~yei 574 (691)
.|.+
T Consensus 100 ~y~~ 103 (106)
T 2jw5_A 100 GFSI 103 (106)
T ss_dssp GTBC
T ss_pred cccc
Confidence 9976
No 66
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.89 E-value=3.3e-10 Score=95.73 Aligned_cols=56 Identities=21% Similarity=0.531 Sum_probs=46.6
Q ss_pred hhcccccccccccccccc--CceecC--CCCcccccccccccC-CCCCCCCCCCCccccCC
Q 038256 33 LQKLALELKCPLCLNLFS--RPLLLP--CDHIFCNSCIPRSAQ-CESECPLCKSQCTYADL 88 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~--~Pv~l~--CgHsFC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l 88 (691)
...++++++||||++.+. +++.++ |||+||+.|+.+++. ....||.||..+..+.+
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999999884 556665 999999999999885 47899999999976543
No 67
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.88 E-value=7.3e-10 Score=92.92 Aligned_cols=58 Identities=28% Similarity=0.662 Sum_probs=49.5
Q ss_pred hccccccccccccccccCc---eecCCCCcccccccccccCCCCCCCCCCCCccccCCCch
Q 038256 34 QKLALELKCPLCLNLFSRP---LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~P---v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 91 (691)
..+++.+.|+||++.|.++ +.++|+|.||..||.+|+.....||+||..+...++.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 4567788999999999876 467999999999999999888999999999987665543
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.87 E-value=2.1e-10 Score=110.87 Aligned_cols=72 Identities=26% Similarity=0.512 Sum_probs=62.8
Q ss_pred HhhccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccccCCCchHHHHHHHHHHhc
Q 038256 32 HLQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 32 ~~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
++..+++.+.||||+++|.+|++++|||+||..||.+|+.. ...||.||..+...++.++..+.+++..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhccc
Confidence 45688999999999999999999999999999999999864 4599999999988888888888887776544
No 69
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.87 E-value=1.8e-09 Score=98.99 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=71.7
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHH--HH--H---HcCCeEeehhHH
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVL--MA--I---LNGNWVLKIDWI 557 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L--~A--i---a~G~wIVs~~Wl 557 (691)
.=.+.|+--++....++.|.++|.+.|+++.+.++++|||||+.. ....+.+.+| .- + +.+.++|+..|+
T Consensus 13 ~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~---~s~~~~~~~L~~~~~~l~~~~~~~~lLdisWl 89 (133)
T 2dun_A 13 GVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEE---TSAEEAVSWQERRMAAAPPGCTPPALLDISWL 89 (133)
T ss_dssp EEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESS---CCHHHHHHHHHHHHHHSCTTCCCCEEEEHHHH
T ss_pred ccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecC---CCHHHHHHHHHHhhcccCcCCCCcEEeccHHH
Confidence 345667777788889999999999999999999999999999954 2456777676 22 2 367899999999
Q ss_pred HHHHHhCCCCCCCCccc
Q 038256 558 KACMEAMNPVGEEPYEI 574 (691)
Q Consensus 558 ~~c~~~g~~vdEe~yei 574 (691)
.+||++|++||++.|.+
T Consensus 90 tecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 90 TESLGAGQPVPVECRHR 106 (133)
T ss_dssp HHHHHHTSCCCCCTTTS
T ss_pred HHHHhcCCcCCcccceE
Confidence 99999999999976654
No 70
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.87 E-value=1.6e-10 Score=108.68 Aligned_cols=70 Identities=21% Similarity=0.498 Sum_probs=56.1
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCC-CCCCCCCCCCccc---------cCCCchHHHHHHHHHHh
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQC-ESECPLCKSQCTY---------ADLRPLAFLENIIAIYK 102 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~-~~~CP~Cr~~~~~---------~~l~~n~~l~~lv~~~~ 102 (691)
...+++++.|+||+++|.+|++++|||+||..||.+|+.. ...||.||.++.. ..+.++..+.+.+..+.
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~ 104 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLP 104 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSE
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccc
Confidence 4788999999999999999999999999999999999875 4589999987532 23445666666655443
No 71
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.84 E-value=1.6e-10 Score=92.84 Aligned_cols=54 Identities=26% Similarity=0.813 Sum_probs=47.6
Q ss_pred cccccccccccccCc-------eecCCCCcccccccccccCCCCCCCCCCCCccccCCCch
Q 038256 38 LELKCPLCLNLFSRP-------LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91 (691)
Q Consensus 38 e~l~CpIC~e~~~~P-------v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 91 (691)
+++.|+||++.|.+| +.++|||.||..|+.+|+.....||.||..+...++.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 467899999999988 899999999999999999888899999999987665543
No 72
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.8e-10 Score=92.77 Aligned_cols=53 Identities=25% Similarity=0.727 Sum_probs=47.3
Q ss_pred hhccccccccccccccccCc-------eecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 33 LQKLALELKCPLCLNLFSRP-------LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~P-------v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
...+++.+.|+||++.|.+| +.++|||.||..||..|+.....||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34667889999999999988 899999999999999999878899999998754
No 73
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.83 E-value=1.5e-09 Score=84.58 Aligned_cols=49 Identities=29% Similarity=0.704 Sum_probs=44.1
Q ss_pred cccccccccccccccC---ceecC-CCCcccccccccccCCCCCCCCCCCCcc
Q 038256 36 LALELKCPLCLNLFSR---PLLLP-CDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 36 l~e~l~CpIC~e~~~~---Pv~l~-CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
+++...|+||++.|.+ ++.++ |+|.||..||.+|++....||+||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 5678899999999987 78887 9999999999999988899999998763
No 74
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.76 E-value=2.4e-09 Score=89.34 Aligned_cols=52 Identities=27% Similarity=0.750 Sum_probs=46.8
Q ss_pred hHHhhccccccccccccccccCceecCCCCc-ccccccccccCCCCCCCCCCCCccc
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHI-FCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHs-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
...+..+++++.|+||++.+.+|+++||||. ||..|+..+ ..||.||..+..
T Consensus 15 ~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 15 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred HHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4457788899999999999999999999999 999999987 789999998854
No 75
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=9.1e-10 Score=90.37 Aligned_cols=53 Identities=36% Similarity=0.837 Sum_probs=47.9
Q ss_pred hhccccccccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcccc
Q 038256 33 LQKLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYA 86 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~ 86 (691)
+..+++.+.|+||++.+.+ +.++|||.||..||.+|+.....||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4567788999999999999 9999999999999999999889999999988654
No 76
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.70 E-value=3e-09 Score=82.83 Aligned_cols=47 Identities=28% Similarity=0.730 Sum_probs=41.7
Q ss_pred cccccccccccccC----ceecCCCCcccccccccccCCCCCCCCCCCCcc
Q 038256 38 LELKCPLCLNLFSR----PLLLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 38 e~l~CpIC~e~~~~----Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
++..|+||++.|.+ ++.++|+|.||..||.+|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45679999999976 789999999999999999987799999998764
No 77
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.70 E-value=2.7e-09 Score=86.93 Aligned_cols=49 Identities=39% Similarity=0.852 Sum_probs=43.5
Q ss_pred ccccccccccccccCc-eecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 37 ALELKCPLCLNLFSRP-LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~P-v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
++...|+||++.+.+| +.++|||.||..|+.+|+.....||.||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3467899999999997 789999999999999998878899999998753
No 78
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=98.68 E-value=5.4e-08 Score=101.50 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=97.7
Q ss_pred ccEEEEEcCCCHHHHHHHHHHHhhcCccEeecc-CCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 486 KEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFW-KPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 486 ~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~-~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
..+|+++| +.+.+..+.+.+.++|+.+. +| .+.|||||+.+- +..+-|+|.|.|+.+|++||+++||.+.....
T Consensus 114 ~P~Vl~~S--ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~kr--nT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~e 188 (325)
T 3huf_A 114 RSMCIQFD--NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQ--AGSSITVGTMYAFLKKTVIIDDSYLQYLSTVK 188 (325)
T ss_dssp CCCCEEES--CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCC--CSSCCCHHHHHHHHTTCEEECHHHHHHHTTCT
T ss_pred eeeEEEec--CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEecc--ccccchHHHHHHHHCCCcEecHHHHHHHHHhh
Confidence 46677775 44567779999999999999 88 777999999742 23567999999999999999999999976431
Q ss_pred --------CCCCCCCccccc-CCCCCCCCchhhhhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCc
Q 038256 565 --------NPVGEEPYEINL-DNHGCEEGPKTGRLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEG 635 (691)
Q Consensus 565 --------~~vdEe~yei~~-d~~~~~~gp~~~R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~ 635 (691)
.|-+..+|.... -..+....|..+- -+-|.|++|++... ..++.-|+++.|=+|-.-+.
T Consensus 189 ~~~~~~~~~wPdp~dflP~i~~g~Ep~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 256 (325)
T 3huf_A 189 ESVIEDASLMPDALECFKNIIKNNDQFPSSPEDC-------INSLEGFSCAMLNT-----SSESHHLLELLGLRISTFMS 256 (325)
T ss_dssp TCCCCTTSSHHHHHHHHHHHHTTCTTCCSCHHHH-------TTTTTTCEEEEETC-----CHHHHHHHHHTTCEEEEEC-
T ss_pred hhhhhcccCCCChHHcCCCCCCCCCCCCCCHHHh-------hcccCceEEEEEcC-----chhhhHHHHHhcceeeeeee
Confidence 122233343320 0000111111111 25699999999853 24788899999998877653
Q ss_pred hhhhhhcCCCCCCCceEEEEe
Q 038256 636 ELLAQCRNDETAPSKVLVVYN 656 (691)
Q Consensus 636 ~~~~~~~~~~~~~~~~~IV~~ 656 (691)
+.+..+. --+++.++|.+
T Consensus 257 -~~~~~~~--~~~~~~~~~~~ 274 (325)
T 3huf_A 257 -LGDIDKE--LISKTDFVVLN 274 (325)
T ss_dssp ------CC--SSSSCSEEEEC
T ss_pred -cccchHh--hhccccEEEEc
Confidence 3333333 23455666655
No 79
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=7.7e-09 Score=86.37 Aligned_cols=52 Identities=27% Similarity=0.750 Sum_probs=46.1
Q ss_pred hHHhhccccccccccccccccCceecCCCCc-ccccccccccCCCCCCCCCCCCccc
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHI-FCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHs-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
...+..+++++.|+||++.+.+|+++||||. ||..|+... ..||+||..+..
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 5567788899999999999999999999999 999999653 689999998854
No 80
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.66 E-value=2.8e-09 Score=97.79 Aligned_cols=54 Identities=26% Similarity=0.794 Sum_probs=48.5
Q ss_pred ccccccccccccccCc-------eecCCCCcccccccccccCCCCCCCCCCCCccccCCCc
Q 038256 37 ALELKCPLCLNLFSRP-------LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRP 90 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~P-------v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 90 (691)
.+++.|+||++.|.+| +.++|||+||..||.+|++....||.||..+....+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 4678999999999999 99999999999999999988889999999997765543
No 81
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.64 E-value=4.7e-09 Score=91.01 Aligned_cols=51 Identities=27% Similarity=0.729 Sum_probs=45.0
Q ss_pred ccccccccccccccccC---ceecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 35 KLALELKCPLCLNLFSR---PLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~---Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
..+++..|+||++.|.+ ++.++|+|.||..||..|+.....||+||..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567889999999987 7889999999999999999888899999998753
No 82
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=4.6e-09 Score=87.45 Aligned_cols=51 Identities=24% Similarity=0.681 Sum_probs=45.1
Q ss_pred ccccccccccccccccCc---eecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 35 KLALELKCPLCLNLFSRP---LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~P---v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
..++...|+||++.|.++ +.++|+|.||..||.+|++....||+||..+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 456778899999999987 789999999999999999878899999998754
No 83
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.62 E-value=6e-09 Score=85.18 Aligned_cols=51 Identities=27% Similarity=0.704 Sum_probs=43.9
Q ss_pred cccccccccccccccc---CceecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 35 KLALELKCPLCLNLFS---RPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~---~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
..++...|+||++.|. .++.++|||.||..||..|+.....||+||..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4566788999999985 45789999999999999999877889999998854
No 84
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=4.6e-09 Score=87.12 Aligned_cols=53 Identities=30% Similarity=0.680 Sum_probs=45.6
Q ss_pred hhccccccccccccccccCceec---CCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 33 LQKLALELKCPLCLNLFSRPLLL---PCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 33 ~~~l~e~l~CpIC~e~~~~Pv~l---~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
+..++++..|+||++.|.++..+ +|+|.||..||.+|++....||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 44667788999999999887544 999999999999999877799999998754
No 85
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.54 E-value=1.6e-08 Score=85.42 Aligned_cols=53 Identities=28% Similarity=0.661 Sum_probs=46.3
Q ss_pred hHHhhccccccccccccccccCceecCCCCc-ccccccccccCCCCCCCCCCCCcccc
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHI-FCNSCIPRSAQCESECPLCKSQCTYA 86 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHs-FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 86 (691)
...++.++++..|+||++.+.+|+.+||||. ||..|+..++ .||.||..+...
T Consensus 9 ~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 9 QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHV 62 (79)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEE
T ss_pred HHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCe
Confidence 3446778888999999999999999999999 9999998764 899999988653
No 86
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.50 E-value=2.4e-08 Score=89.80 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=41.0
Q ss_pred ccccccccccccCce------------------ecCCCCccccccccccc-----CCCCCCCCCCCCccc
Q 038256 39 ELKCPLCLNLFSRPL------------------LLPCDHIFCNSCIPRSA-----QCESECPLCKSQCTY 85 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv------------------~l~CgHsFC~~Ci~~~~-----~~~~~CP~Cr~~~~~ 85 (691)
+..|+||++.|.+|. .++|+|.||..||..|+ .....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999999998765 78999999999999998 457899999998854
No 87
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.44 E-value=3.6e-07 Score=94.47 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=55.4
Q ss_pred HHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHH-HHHcCCeEeehhHHHHHHHhCCCCCCCCccc
Q 038256 501 LLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLM-AILNGNWVLKIDWIKACMEAMNPVGEEPYEI 574 (691)
Q Consensus 501 ~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~-Aia~G~wIVs~~Wl~~c~~~g~~vdEe~yei 574 (691)
+.+...+..+||++...+++.|||||+..+..+ ...+|-+. .+..+..||+++||.+|+++|+++||++|.|
T Consensus 191 ~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r--~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 191 AIKALELRFHGAKVVSCLAEGVSHVIIGEDHSR--VADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp HHHHHHHHHTTCEEESSCCTTCCEEEECSCCTT--HHHHHHHHHTCSSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred HHHHHHHHccCCEEecCCCCCceEEEECCCCcc--HHHHHHHHhhcCCCCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 456788899999999999999999999864221 11133222 1234679999999999999999999999975
No 88
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.39 E-value=1.8e-07 Score=100.20 Aligned_cols=52 Identities=27% Similarity=0.776 Sum_probs=47.1
Q ss_pred hHHhhccccccccccccccccCceecCCCCc-ccccccccccCCCCCCCCCCCCccc
Q 038256 30 VLHLQKLALELKCPLCLNLFSRPLLLPCDHI-FCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 30 ~~~~~~l~e~l~CpIC~e~~~~Pv~l~CgHs-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
...+..+++++.|+||++.+.+|+++||||. ||..|+..+ ..||.||..+..
T Consensus 286 ~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 286 EEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred HHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4567888999999999999999999999999 999999987 689999998854
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.39 E-value=1.8e-08 Score=92.45 Aligned_cols=56 Identities=25% Similarity=0.756 Sum_probs=49.5
Q ss_pred cccccccccccccccCc-------eecCCCCcccccccccccCCCCCCCCCCCCccccCCCch
Q 038256 36 LALELKCPLCLNLFSRP-------LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91 (691)
Q Consensus 36 l~e~l~CpIC~e~~~~P-------v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 91 (691)
.++.+.|+||++.|.+| +.++|||.||..||.+|+.....||+||..+..+++.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 35678899999999987 899999999999999999888899999999987766543
No 90
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=8.3e-07 Score=78.34 Aligned_cols=77 Identities=16% Similarity=0.064 Sum_probs=59.1
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeec-----------cCCCceEEEecCCCCCcccchHHHHHHHHcCCeEee
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKF-----------WKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLK 553 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~-----------~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs 553 (691)
-++++|+.++=.+ ++.|+.+++.+||.|..+ .+..+||+|+..+. .++ ...+.-||.
T Consensus 13 F~g~~F~i~~e~p--~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~---~~~-------~~~~r~~Vq 80 (100)
T 2ep8_A 13 FEGLKFFLNREVP--REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPG---QQT-------SVIGRCYVQ 80 (100)
T ss_dssp TSSCEEECCSSSC--HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTT---TSC-------CBTTBEEEC
T ss_pred cCCcEEEEecCCC--HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccc---hhh-------hcCCCeEEc
Confidence 4667777655333 678888899999999765 24689999998642 111 235679999
Q ss_pred hhHHHHHHHhCCCCCCCCcc
Q 038256 554 IDWIKACMEAMNPVGEEPYE 573 (691)
Q Consensus 554 ~~Wl~~c~~~g~~vdEe~ye 573 (691)
|+||.||+.+++++++++|.
T Consensus 81 PqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 81 PQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp THHHHHHHHHTSCCCTTTCC
T ss_pred chHHHHHHhcCCcCChhhcC
Confidence 99999999999999999983
No 91
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=7.8e-08 Score=81.49 Aligned_cols=49 Identities=22% Similarity=0.559 Sum_probs=41.3
Q ss_pred cccccccccccccC--------------ceec-CCCCcccccccccccCCCCCCCCCCCCcccc
Q 038256 38 LELKCPLCLNLFSR--------------PLLL-PCDHIFCNSCIPRSAQCESECPLCKSQCTYA 86 (691)
Q Consensus 38 e~l~CpIC~e~~~~--------------Pv~l-~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~ 86 (691)
++..|+||++.|.+ ++.+ +|+|.|+..||.+|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45679999999976 4454 5999999999999998888999999987654
No 92
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.28 E-value=1.1e-07 Score=76.96 Aligned_cols=48 Identities=17% Similarity=0.491 Sum_probs=43.0
Q ss_pred ccccccccccccccCceec--CCCCc-ccccccccccCCCCCCCCCCCCcc
Q 038256 37 ALELKCPLCLNLFSRPLLL--PCDHI-FCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l--~CgHs-FC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
+++..|+||++.+.+++.+ ||||. ||..|+..++.....||+||.++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3566899999999999977 99999 899999999887889999999874
No 93
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.28 E-value=1.8e-07 Score=101.00 Aligned_cols=52 Identities=21% Similarity=0.540 Sum_probs=45.7
Q ss_pred ccccccccccccccccCceecCCCCcccccccccccC-CCCCCCCCCCCcccc
Q 038256 35 KLALELKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQ-CESECPLCKSQCTYA 86 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 86 (691)
..+....|+||++.+.+|+.++|||.||..|+..|+. ....||.||..+...
T Consensus 328 ~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 328 MGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred hcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3444579999999999999999999999999999887 678999999988654
No 94
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.27 E-value=6.3e-08 Score=84.29 Aligned_cols=65 Identities=25% Similarity=0.556 Sum_probs=47.1
Q ss_pred cccccccccccccCceec---CCCCcccccccccccC-----C---CCCCCC--CCCC--ccccCCCchHHHHHHHHHHh
Q 038256 38 LELKCPLCLNLFSRPLLL---PCDHIFCNSCIPRSAQ-----C---ESECPL--CKSQ--CTYADLRPLAFLENIIAIYK 102 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l---~CgHsFC~~Ci~~~~~-----~---~~~CP~--Cr~~--~~~~~l~~n~~l~~lv~~~~ 102 (691)
+.++|+||++.+..|+++ +|||.||..|+..++. + ...||. |+.. +....+. +....+++++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence 467899999999998754 7999999999999884 1 368999 9988 5443322 223345555554
Q ss_pred c
Q 038256 103 G 103 (691)
Q Consensus 103 ~ 103 (691)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.23 E-value=1e-07 Score=76.53 Aligned_cols=53 Identities=15% Similarity=0.306 Sum_probs=46.9
Q ss_pred ccccccccccccCceec-CCCCcccccccccccCCCCCCCCCCCCccccCCCch
Q 038256 39 ELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQCESECPLCKSQCTYADLRPL 91 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 91 (691)
.+.||||++++.+||.+ +|||+|++.||.+|+.....||..+.++...++.++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 47799999999999999 999999999999999765679999999988777654
No 96
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.21 E-value=1.8e-07 Score=75.45 Aligned_cols=47 Identities=26% Similarity=0.594 Sum_probs=41.9
Q ss_pred cccccccccccccCceec--CCCCc-ccccccccccCCCCCCCCCCCCcc
Q 038256 38 LELKCPLCLNLFSRPLLL--PCDHI-FCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 38 e~l~CpIC~e~~~~Pv~l--~CgHs-FC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
....|+||++.+.+++.+ ||||. ||..|+.+++.....||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345799999999999887 99998 999999998877789999999874
No 97
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.19 E-value=5.2e-07 Score=93.00 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=49.1
Q ss_pred CccEEEEEcCCC-HHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcC----------CeEee
Q 038256 485 AKEWVFCGSALS-VEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNG----------NWVLK 553 (691)
Q Consensus 485 ~~~~vi~~Sgls-~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G----------~wIVs 553 (691)
-++++|++++.. ...++.+...+..+||+++++++..+||||+..+..+......++-..++.+ ..||+
T Consensus 161 F~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~ 240 (264)
T 1z56_C 161 FSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVA 240 (264)
T ss_dssp -------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCEEEC
T ss_pred hCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCCEEec
Confidence 467788888864 4445566778999999999999877777777532110000001111223322 49999
Q ss_pred hhHHHHHHHhCCCCCCCCccc
Q 038256 554 IDWIKACMEAMNPVGEEPYEI 574 (691)
Q Consensus 554 ~~Wl~~c~~~g~~vdEe~yei 574 (691)
++||.+|+++|++|||++|.+
T Consensus 241 ~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 241 PEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp THHHHHHHTTSCCCSSCCC--
T ss_pred HHHHHHHHHcCCcCCHHHcCC
Confidence 999999999999999999965
No 98
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=6.9e-07 Score=73.18 Aligned_cols=45 Identities=29% Similarity=0.739 Sum_probs=39.8
Q ss_pred ccccccccccccccCceecCCCCc-ccccccccccCCCCCCCCCCCCccc
Q 038256 37 ALELKCPLCLNLFSRPLLLPCDHI-FCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~CgHs-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
++...|+||++.+.+++.+||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456789999999999999999999 99999985 3689999998854
No 99
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.16 E-value=1.9e-06 Score=74.81 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=62.3
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHh
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEA 563 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~ 563 (691)
-....|++||.-...|+.+.+++..+||.|..+++.++||||++... +-|+-.|...|+.||+.+|+.+.++.
T Consensus 8 l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~------gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 8 LKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENP------GSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp STTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSS------STTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCC------ChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 45666777775544899999999999999999999999999999753 35899999999999999999998863
No 100
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.15 E-value=4.8e-07 Score=80.74 Aligned_cols=48 Identities=25% Similarity=0.519 Sum_probs=42.0
Q ss_pred cccccccccccccCc------------------eecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 38 LELKCPLCLNLFSRP------------------LLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 38 e~l~CpIC~e~~~~P------------------v~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
++..|+||++.|.++ +.++|+|.|+..||.+|+.....||+||..+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 456799999999876 457999999999999999989999999998654
No 101
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.15 E-value=8.8e-07 Score=77.89 Aligned_cols=88 Identities=7% Similarity=0.110 Sum_probs=59.1
Q ss_pred cccccccccc-cccCcee--cCCCCccccccccc-ccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhcCCCCCCcc--
Q 038256 38 LELKCPLCLN-LFSRPLL--LPCDHIFCNSCIPR-SAQCESECPLCKSQCTYADLRPLAFLENIIAIYKGLDASPSSN-- 111 (691)
Q Consensus 38 e~l~CpIC~e-~~~~Pv~--l~CgHsFC~~Ci~~-~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~~~~C~~-- 111 (691)
+++.|+||.+ ++.+|+. +.|+|+||..|+.. +...... . +..+.. .+. . .......|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~-~--~h~l~~-~~~-~----------~~~~~~~C~~H~ 66 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPF-T--GHRLIE-PIP-D----------SHIRGLMCLEHE 66 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSS-T--TCCBSS-CCC-S----------CCSSCCCCSSCS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCcc-C--CCeeec-ccc-c----------cCccCCcCcCcC
Confidence 5689999996 4788888 99999999999997 4322111 0 111100 000 0 0112335655
Q ss_pred --ccccccccccc-ccccccccCCCCCceeee
Q 038256 112 --LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 112 --~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
.+.+||+++.. +|..|..+++|++|++.+
T Consensus 67 ~e~l~~fC~~~~~~iC~~C~~~~~H~~H~~~~ 98 (101)
T 2jun_A 67 DEKVNMYCVTDDQLICALCKLVGRHRDHQVAA 98 (101)
T ss_dssp SSCCCEEETTTTEEECHHHHHHTTTSSSCBCC
T ss_pred CCcceEECCCCCCccchhcCCCCCcCCCCeec
Confidence 36789999888 999998889999999754
No 102
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=2.4e-05 Score=70.32 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=66.1
Q ss_pred CccEEEEEcCCC-HHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHh
Q 038256 485 AKEWVFCGSALS-VEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEA 563 (691)
Q Consensus 485 ~~~~vi~~Sgls-~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~ 563 (691)
.....|++||.- .-.|+.+.+++..+||.|..+++.++||||++.+. .+-|+-.|...|+.||+.+|+.+.++.
T Consensus 23 l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~-----g~sKl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 23 LEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDS-----GQSKSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp STTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSC-----CSHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred cCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCC-----ChHHHHHHHHcCCeEEeHHHHHHHHhh
Confidence 345555556644 33588999999999999999999999999999753 246999999999999999999999975
Q ss_pred CCCCCCCCccc
Q 038256 564 MNPVGEEPYEI 574 (691)
Q Consensus 564 g~~vdEe~yei 574 (691)
+ .-+...|+.
T Consensus 98 ~-~~~~~~~~~ 107 (112)
T 2ebu_A 98 M-PGKKSKYEI 107 (112)
T ss_dssp S-CCCCCSSCC
T ss_pred C-CCcccccce
Confidence 3 444455554
No 103
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.97 E-value=2.3e-05 Score=70.12 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=60.3
Q ss_pred ccEEEEEcCCC-HHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 486 KEWVFCGSALS-VEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 486 ~~~vi~~Sgls-~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
.+..|++||.- .-.|+.+.+++..+||.|..+++.++||||++.+. .+-|+-.|...|+.||+.+|+.+.++.+
T Consensus 34 ~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~-----g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 34 EGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDS-----GQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCC-----CHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCC-----ChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 34444445533 33578999999999999999999999999999753 2469999999999999999999998765
No 104
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=97.84 E-value=1.4e-05 Score=68.55 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=52.8
Q ss_pred cEEEEE-cCCCHHHHHHHHHHHhhcCccEeeccCC-CceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 487 EWVFCG-SALSVEEKLLLVRFGNMIGVPVSKFWKP-NVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 487 ~~vi~~-Sgls~~ek~~l~~~~~~lG~~v~~~~~~-~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
++.|.. -.+.. ...|...+.++||.+..++.. ++||+|+..+ ...+.-+|+++||.+|+++|
T Consensus 19 g~~~~l~~~v~~--~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------------~~~~~~~V~p~WI~dcI~k~ 82 (88)
T 3pc7_A 19 GVRLYLPPSTPD--FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------------KNPAAQQVSPEWIWACIRKR 82 (88)
T ss_dssp TCEECCCTTSTT--HHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------------TCTTSEEECHHHHHHHHHHT
T ss_pred CeEEEccCCcCc--hhhheeeeeecCCEEecccCCCcCeEEecCCC--------------cCCCCcEEchHHHHHHHhCC
Confidence 444444 44443 368889999999999887774 8999998743 35778899999999999999
Q ss_pred CCCCC
Q 038256 565 NPVGE 569 (691)
Q Consensus 565 ~~vdE 569 (691)
++|++
T Consensus 83 ~Ll~~ 87 (88)
T 3pc7_A 83 RLVAP 87 (88)
T ss_dssp SCCSC
T ss_pred cccCC
Confidence 99986
No 105
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.84 E-value=2.4e-06 Score=77.47 Aligned_cols=47 Identities=26% Similarity=0.516 Sum_probs=0.4
Q ss_pred ccccccccccccCce------------------ecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 39 ELKCPLCLNLFSRPL------------------LLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv------------------~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
+-.|+||++.|.++. .++|+|.|+..||.+|+.....||+||.++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 357999999998742 35899999999999999888999999998643
No 106
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.75 E-value=1.8e-05 Score=79.44 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=57.5
Q ss_pred CccEEEEEcC-CCHHHHHHHHHHHhhcCccEeeccCC-----CceEEEecCCCCCcccchHHHH-HHHHcCCeEeehhHH
Q 038256 485 AKEWVFCGSA-LSVEEKLLLVRFGNMIGVPVSKFWKP-----NVTHVIAATDAKGSCTRTLKVL-MAILNGNWVLKIDWI 557 (691)
Q Consensus 485 ~~~~vi~~Sg-ls~~ek~~l~~~~~~lG~~v~~~~~~-----~vTHlI~~~~~~~~~~RT~K~L-~Aia~G~wIVs~~Wl 557 (691)
..++.|++++ +....++.|.++++..||++...+.. .+||+|+-.++. ..+..++- +|...|..||+++||
T Consensus 118 F~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~--~~~~~~~~~l~~~~~i~iVs~~Wl 195 (229)
T 1l0b_A 118 FEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSA--WTEDNDCPDIGQLCKGRLVMWDWV 195 (229)
T ss_dssp CTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC---------------------CEEETHHH
T ss_pred hcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCc--cchhhhHHHHHHHcCCeEeehhHH
Confidence 3555666654 55556889999999999999998765 368855543311 11222322 134578999999999
Q ss_pred HHHHHhCCCCCCCCcccc
Q 038256 558 KACMEAMNPVGEEPYEIN 575 (691)
Q Consensus 558 ~~c~~~g~~vdEe~yei~ 575 (691)
.+|+.+++++++++|.+.
T Consensus 196 ldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 196 LDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp HHHHHTTSCCCGGGGBCC
T ss_pred HHHHhcCCcCCccceEcc
Confidence 999999999999999884
No 107
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.68 E-value=6e-05 Score=67.82 Aligned_cols=81 Identities=10% Similarity=-0.072 Sum_probs=61.6
Q ss_pred cEEEEEcC-CCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhH---------
Q 038256 487 EWVFCGSA-LSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDW--------- 556 (691)
Q Consensus 487 ~~vi~~Sg-ls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~W--------- 556 (691)
...|++|| |.. .|+.+.+.+..+||+|...++..+||||++.+ .-.-.-|+-.|...|+.||+.+|
T Consensus 13 G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~---~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~~~ 88 (113)
T 2cok_A 13 NMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKE---VEKMNKKMEEVKEANIRVVSEDFLQDVSASTK 88 (113)
T ss_dssp SCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHH---HHHCCHHHHHHHHTTCCEECTHHHHHHHSCCS
T ss_pred CCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCC---CCCCChHHHHHHHCCCcEEeHHHHHHHHhhch
Confidence 33344444 444 68999999999999999999999999999832 00124599999999999999999
Q ss_pred -HHHHHHhCCCCCCCC
Q 038256 557 -IKACMEAMNPVGEEP 571 (691)
Q Consensus 557 -l~~c~~~g~~vdEe~ 571 (691)
+.+|++...+.|.+.
T Consensus 89 ~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 89 SLQELFLAHILSSWGA 104 (113)
T ss_dssp CHHHHHHHTBCSSCCC
T ss_pred hHHHHHHHhcCCCCCC
Confidence 556666666666554
No 108
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.60 E-value=2.6e-05 Score=77.15 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=61.8
Q ss_pred CccEEEEEcC-CCHHHHHHHHHHHhhcCccEeeccCCC-----ceEEEecCCCCCcccchHHH-HHHHHcCCeEeehhHH
Q 038256 485 AKEWVFCGSA-LSVEEKLLLVRFGNMIGVPVSKFWKPN-----VTHVIAATDAKGSCTRTLKV-LMAILNGNWVLKIDWI 557 (691)
Q Consensus 485 ~~~~vi~~Sg-ls~~ek~~l~~~~~~lG~~v~~~~~~~-----vTHlI~~~~~~~~~~RT~K~-L~Aia~G~wIVs~~Wl 557 (691)
..++.|++++ +....++.|.++++..||++..+.... ++++|+..++. .....++ -+|...|..||+++||
T Consensus 116 F~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~--~~~~~~~~~~a~~~~~~iV~~~Wi 193 (214)
T 1t15_A 116 FRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDA--WTEDNGFHAIGQMCEAPVVTREWV 193 (214)
T ss_dssp TTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGG--CSSCGGGGSSTTTCSSCEEEHHHH
T ss_pred cCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCc--ccchhhHHHHHHhcCCcEEeccHH
Confidence 3556666655 555567899999999999999876542 23454443211 1111122 1345679999999999
Q ss_pred HHHHHhCCCCCCCCcccc
Q 038256 558 KACMEAMNPVGEEPYEIN 575 (691)
Q Consensus 558 ~~c~~~g~~vdEe~yei~ 575 (691)
.+|+.+++++|+++|.+.
T Consensus 194 ~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 194 LDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHTSCCCSGGGBCC
T ss_pred HHhHhhcCcCCCcceeec
Confidence 999999999999999873
No 109
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=97.57 E-value=2.2e-05 Score=77.70 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=58.8
Q ss_pred EEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCC
Q 038256 489 VFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVG 568 (691)
Q Consensus 489 vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vd 568 (691)
+++.+++....++.|.++++..||+|..+.. .++++|.... + +...+..||+++||.||+.+++++|
T Consensus 125 ~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-~~~iiI~~~~------~------~~~~~~~~V~p~Wi~DsI~~~~llp 191 (199)
T 3u3z_A 125 VMFVSPASSPPVAKLCELVHLCGGRVSQVPR-QASIVIGPYS------G------KKKATVKYLSEKWVLDSITQHKVCA 191 (199)
T ss_dssp CEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-GCSEEESCCC------S------CCCTTCEEECHHHHHHHHHHTSCCC
T ss_pred EEEECCCCCCCHHHHHHHHHHcCCEEeccCC-CCEEEEeCCc------h------hccCCCcEEChhHHHHHHHcCCcCC
Confidence 5666777655678999999999999999874 5666665422 1 2357899999999999999999999
Q ss_pred CCCccc
Q 038256 569 EEPYEI 574 (691)
Q Consensus 569 Ee~yei 574 (691)
.++|.+
T Consensus 192 ~~~Y~~ 197 (199)
T 3u3z_A 192 PENYLL 197 (199)
T ss_dssp GGGGBC
T ss_pred hHhccC
Confidence 999976
No 110
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=2.2e-05 Score=66.30 Aligned_cols=50 Identities=24% Similarity=0.574 Sum_probs=41.9
Q ss_pred cccccccccccccc--CceecCCC-----CcccccccccccCC--CCCCCCCCCCcccc
Q 038256 37 ALELKCPLCLNLFS--RPLLLPCD-----HIFCNSCIPRSAQC--ESECPLCKSQCTYA 86 (691)
Q Consensus 37 ~e~l~CpIC~e~~~--~Pv~l~Cg-----HsFC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 86 (691)
.++..|.||++.|. +++.+||. |.|...||.+|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 45568999998884 68889996 99999999999864 46999999988654
No 111
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.22 E-value=0.00025 Score=70.49 Aligned_cols=85 Identities=6% Similarity=-0.028 Sum_probs=63.4
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCc--eEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNV--THVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~v--THlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
-.++.|++++.....++.|.++++..||++........ +|+|+...++- . ++-.++..|.+||+.+||.+|+.
T Consensus 116 F~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~---~--~~~~~~~~~i~vvs~eWi~~sI~ 190 (209)
T 2etx_A 116 LEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDF---P--HCSIPLRVGLPLLSPEFLLTGVL 190 (209)
T ss_dssp TTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGG---G--GCHHHHHHTCCEECTHHHHHHHH
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccH---H--HHHHHHHCCCeEEcHHHHHHHHH
Confidence 34556777776555578999999999999998766532 67777543221 1 22346778999999999999999
Q ss_pred hCCCCCCCCcccc
Q 038256 563 AMNPVGEEPYEIN 575 (691)
Q Consensus 563 ~g~~vdEe~yei~ 575 (691)
.+++ |++.|.+.
T Consensus 191 ~q~l-d~e~y~l~ 202 (209)
T 2etx_A 191 KQEA-KPEAFVLS 202 (209)
T ss_dssp HTCC-CGGGGBCC
T ss_pred hccc-ChHHheec
Confidence 9885 99999883
No 112
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.21 E-value=0.00045 Score=71.05 Aligned_cols=85 Identities=12% Similarity=-0.006 Sum_probs=62.3
Q ss_pred ccEEEEEcCCC-HHHHHHHHHHHhhcCccEeeccC---------CCceEEEecCCCCCcccchHHHHHHHHcCCeEeehh
Q 038256 486 KEWVFCGSALS-VEEKLLLVRFGNMIGVPVSKFWK---------PNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKID 555 (691)
Q Consensus 486 ~~~vi~~Sgls-~~ek~~l~~~~~~lG~~v~~~~~---------~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~ 555 (691)
+++.|++++.. ..-++.+..++...||.+..... ...+|||+.+.. ..+.++.+|...|..||+.+
T Consensus 157 ~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~----~~~~~~~~a~~~~i~iVs~E 232 (259)
T 1kzy_C 157 QNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPS----CPASVLKCAEALQLPVVSQE 232 (259)
T ss_dssp TTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTT----CCHHHHHHHHHHTCCEECHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCC----ChHHHHHHHHhcCCCEecHH
Confidence 45555554433 33456788889999999887653 246666665321 23466789999999999999
Q ss_pred HHHHHHHhCCCCCCCCccc
Q 038256 556 WIKACMEAMNPVGEEPYEI 574 (691)
Q Consensus 556 Wl~~c~~~g~~vdEe~yei 574 (691)
||.+|+..|+++|++.+.=
T Consensus 233 Wv~~sI~~~~ll~~~~hp~ 251 (259)
T 1kzy_C 233 WVIQCLIVGERIGFKQHPK 251 (259)
T ss_dssp HHHHHHHHTSCCCTTSSGG
T ss_pred HHHHHHHhCCcCCCCcCcc
Confidence 9999999999999987753
No 113
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=96.99 E-value=0.00022 Score=70.63 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=56.2
Q ss_pred CccEEEEEcC-CCHHHHHHHHHHHhhcCccEeeccC-----------------------CCceEEEecCCCCCcccchHH
Q 038256 485 AKEWVFCGSA-LSVEEKLLLVRFGNMIGVPVSKFWK-----------------------PNVTHVIAATDAKGSCTRTLK 540 (691)
Q Consensus 485 ~~~~vi~~Sg-ls~~ek~~l~~~~~~lG~~v~~~~~-----------------------~~vTHlI~~~~~~~~~~RT~K 540 (691)
..++.|++++ +....++.|.++++..||++..... ..+||+|+..+... ....
T Consensus 105 F~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~-~~~~-- 181 (210)
T 2nte_A 105 FDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCN-YHPE-- 181 (210)
T ss_dssp TTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSS-CCCS--
T ss_pred cCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccc-cCHH--
Confidence 3455666665 5566789999999999999986211 35799988754110 0000
Q ss_pred HHHHHHcCCeEeehhHHHHHHHhCCCCCCC
Q 038256 541 VLMAILNGNWVLKIDWIKACMEAMNPVGEE 570 (691)
Q Consensus 541 ~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe 570 (691)
.+...+.++|+++||.||+.+++++|.+
T Consensus 182 --~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 182 --RVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp --CSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred --HHhccCcccccHHHHHHHHHhCeeccCC
Confidence 1222455999999999999999999865
No 114
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=96.21 E-value=0.008 Score=50.98 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=31.3
Q ss_pred CCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 596 APKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 596 ~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..++|+|+.|||+|. ..+.++.|+++|+..||++....
T Consensus 4 ~~~~f~g~~~~i~g~-~~~~~~~l~~~i~~~GG~~~~~~ 41 (92)
T 4id3_A 4 SSKIFKNCVIYINGY-TKPGRLQLHEMIVLHGGKFLHYL 41 (92)
T ss_dssp --CTTTTCEEEECSC-CSSCHHHHHHHHHHTTCEEESSC
T ss_pred cccccCCEEEEEeCC-CCcCHHHHHHHHHHCCCEEEEEe
Confidence 356999999999983 44567899999999999998765
No 115
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.10 E-value=0.0028 Score=52.51 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=38.8
Q ss_pred ccccccccccccCce-ecCCCCcccccccccccCCC--CCCCCCCCCccc
Q 038256 39 ELKCPLCLNLFSRPL-LLPCDHIFCNSCIPRSAQCE--SECPLCKSQCTY 85 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv-~l~CgHsFC~~Ci~~~~~~~--~~CP~Cr~~~~~ 85 (691)
.-.|.||.+++..-+ -..|+|.|=..||.+|++.. ..||.||.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 456999999998543 23799999999999999865 899999987753
No 116
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=96.04 E-value=0.0088 Score=51.54 Aligned_cols=38 Identities=24% Similarity=0.507 Sum_probs=31.6
Q ss_pred CCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 596 APKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 596 ~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..+||+|+.||+.| +..+.++.|+++|+..||++....
T Consensus 9 ~~~lF~g~~~~isg-~~~~~~~~L~~~i~~~GG~~~~~~ 46 (97)
T 2ebw_A 9 SSTIFSGVAIYVNG-YTDPSAEELRKLMMLHGGQYHVYY 46 (97)
T ss_dssp CCCTTTTCEEEECS-SCSSCHHHHHHHHHHTTCEECSSC
T ss_pred CCCCCCCeEEEEeC-CCcccHHHHHHHHHHcCCEEeeec
Confidence 35799999999998 455668999999999999986543
No 117
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.95 E-value=0.0019 Score=56.14 Aligned_cols=45 Identities=24% Similarity=0.631 Sum_probs=37.4
Q ss_pred ccccccccccC-ceecCCCCccccccccccc-CCCCCCCCCCCCccc
Q 038256 41 KCPLCLNLFSR-PLLLPCDHIFCNSCIPRSA-QCESECPLCKSQCTY 85 (691)
Q Consensus 41 ~CpIC~e~~~~-Pv~l~CgHsFC~~Ci~~~~-~~~~~CP~Cr~~~~~ 85 (691)
.|++|.-.+.. -.++||.|.||..|+..+. ++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58899887765 4588999999999999887 457899999988853
No 118
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=95.89 E-value=0.013 Score=51.80 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=40.0
Q ss_pred CCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeC
Q 038256 596 APKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNL 657 (691)
Q Consensus 596 ~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~ 657 (691)
.+.+|.|++|||.+.+....+..|+++|.+.||+|...+ +.+.+.||.+.
T Consensus 4 Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~------------~~~vTHvIt~~ 53 (104)
T 3pc6_A 4 LPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYM------------NERVQFVITAQ 53 (104)
T ss_dssp CCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSC------------CTTCCEEEESS
T ss_pred cchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEccc------------CCCceEEEeCC
Confidence 478999999999997655678899999999999977743 23466777774
No 119
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=95.78 E-value=0.011 Score=59.88 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCccEeeccC----CCceEEEecCCC--CCcccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCCCC
Q 038256 497 VEEKLLLVRFGNMIGVPVSKFWK----PNVTHVIAATDA--KGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEE 570 (691)
Q Consensus 497 ~~ek~~l~~~~~~lG~~v~~~~~----~~vTHlI~~~~~--~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe 570 (691)
....+.+..++...||+|....+ .+.||+++.... .+.. ..++..+...|.+||+.+||.+++.++.+.+.+
T Consensus 147 ~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~--~~~~~~~~~~~i~~v~~ewlld~i~~~~~~~~~ 224 (235)
T 3al2_A 147 QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDS--GVNIAEAAAQNVYCLRTEYIADYLMQESPPHVE 224 (235)
T ss_dssp HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC----------CCCHHHHHHTTCEEEETHHHHHHHHCSSCCCHH
T ss_pred CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccch--hHHHHHHHHcCCcEEcHHHHHHHHhcCCCCChh
Confidence 45667899999999999987533 246999886420 0001 135777788999999999999999999999999
Q ss_pred Ccccc
Q 038256 571 PYEIN 575 (691)
Q Consensus 571 ~yei~ 575 (691)
.|.+.
T Consensus 225 ~y~l~ 229 (235)
T 3al2_A 225 NYCLP 229 (235)
T ss_dssp HHBCG
T ss_pred heEcc
Confidence 99884
No 120
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=95.54 E-value=0.047 Score=48.53 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=40.5
Q ss_pred CCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeC
Q 038256 598 KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNL 657 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~ 657 (691)
..|.|..|+|+|.+....+++++++|+..||+|..+- +....|+|+-.
T Consensus 31 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sV------------SkkTd~LV~G~ 78 (109)
T 2k6g_A 31 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV------------SKKTNYLVMGR 78 (109)
T ss_dssp TTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSC------------CTTCCEEEECB
T ss_pred CCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcc------------cCCceEEEECC
Confidence 4699999999999887789999999999999999875 33456777763
No 121
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.31 E-value=0.005 Score=48.81 Aligned_cols=49 Identities=14% Similarity=0.309 Sum_probs=39.7
Q ss_pred ccccccccccccccCceecCCCC-----cccccccccccC--CCCCCCCCCCCccc
Q 038256 37 ALELKCPLCLNLFSRPLLLPCDH-----IFCNSCIPRSAQ--CESECPLCKSQCTY 85 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~CgH-----sFC~~Ci~~~~~--~~~~CP~Cr~~~~~ 85 (691)
++...|.||++-..+|..+||.+ .|=..||.+|+. +...||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 34567999998888888889764 778889999985 46899999998754
No 122
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.013 Score=50.62 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=40.1
Q ss_pred CCCCCCCceEEEecCcCc----ccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeCC
Q 038256 596 APKLFDGLSFYFSGNFML----GYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLD 658 (691)
Q Consensus 596 ~~~LF~G~~f~l~g~~~~----~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~~ 658 (691)
..++|.|..|||-.+... ...++|.+||.+.||+|+..+|+ .+....|||.+-.
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~---------~s~~~~yVVSpyN 65 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPR---------ESKENVFIVSPYN 65 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCC---------CCSSCCCCBCTTC
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcc---------cccCCeEEEeCCC
Confidence 346899999999854222 24689999999999999999985 3334566666533
No 123
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=95.02 E-value=0.019 Score=58.28 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCccE--eeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCCC
Q 038256 500 KLLLVRFGNMIGVPV--SKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGE 569 (691)
Q Consensus 500 k~~l~~~~~~lG~~v--~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdE 569 (691)
.+.+..++..+||.+ +.++....+|+|...+. . .+...+.+||+.+||.+|+..|+++|.
T Consensus 180 ~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~---~-------~~~~~~~~iV~~eWv~~~i~~g~~l~~ 241 (241)
T 2vxb_A 180 ALAHVYHALALGADVEIRPNVAHLECDLILTMDG---N-------IVDETNCPVVDPEWIVECLISQSDIST 241 (241)
T ss_dssp HHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSS---C-------CCSSCSSCEECHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHcCCceecccccccCCccEEEECCc---c-------ccccCCCCEecHHHHHHHHHhceecCC
Confidence 378888999999999 55555567898887431 1 156788999999999999999999873
No 124
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=94.93 E-value=0.033 Score=49.83 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=33.9
Q ss_pred hhhhhccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 589 RLRALNKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 589 R~~~~~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
|........++|.|+.|+|+| |....+..|+++|+..||++....
T Consensus 11 ~~~~~~~~~p~F~g~~Ic~sG-f~~~er~~l~~~i~~~GG~~~~~l 55 (112)
T 3l46_A 11 RENLYFQGVPPFQDCILSFLG-FSDEEKTNMEEMTEMQGGKYLPLG 55 (112)
T ss_dssp -------CCCTTTTCEECEES-CCHHHHHHHHHHHHHTTCEECCTT
T ss_pred cccccccCCCccCCeEEEEeC-CCHHHHHHHHHHHHHcCCEECccc
Confidence 433334456789999999999 777778999999999999999754
No 125
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=94.89 E-value=0.013 Score=69.71 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=63.6
Q ss_pred hccccccccccccccccCceecCCC-CcccccccccccCCCCCCCCCCCCccccCCCchHHHHHHHHHHhc
Q 038256 34 QKLALELKCPLCLNLFSRPLLLPCD-HIFCNSCIPRSAQCESECPLCKSQCTYADLRPLAFLENIIAIYKG 103 (691)
Q Consensus 34 ~~l~e~l~CpIC~e~~~~Pv~l~Cg-HsFC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 103 (691)
..+-+++.|||-+++++|||+++-| ++|=+.+|.+|+....+||.=|.++...++.||..++..++.+..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 4556789999999999999999998 699999999999878899999999998899999999999988754
No 126
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=94.79 E-value=0.055 Score=53.98 Aligned_cols=83 Identities=10% Similarity=-0.039 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCC------------ceEEEecCCCCCcccchHHHHHHHHcCCeEee
Q 038256 486 KEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPN------------VTHVIAATDAKGSCTRTLKVLMAILNGNWVLK 553 (691)
Q Consensus 486 ~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~------------vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs 553 (691)
.++.|+.++-....++.|.++++..||++....... ...+|+..+++- . .+..++..|+.|++
T Consensus 124 ~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~---~--~~~~~~~~~~~v~s 198 (219)
T 3sqd_A 124 KAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDL---H--LCREYFARGIDVHN 198 (219)
T ss_dssp TTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGG---G--GGHHHHHTTCCCEE
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHH---H--HHHHHHHCCCcEEe
Confidence 445566666433347899999999999999876431 223333333222 2 23344568999999
Q ss_pred hhHHHHHHHhCCCCCCCCccc
Q 038256 554 IDWIKACMEAMNPVGEEPYEI 574 (691)
Q Consensus 554 ~~Wl~~c~~~g~~vdEe~yei 574 (691)
.+||.+|+-++++ |-+.|.+
T Consensus 199 ~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 199 AEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp THHHHHHHHHTCC-CTTTSBC
T ss_pred HHHHHHHHHheee-cchhccc
Confidence 9999999998776 7777765
No 127
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=94.60 E-value=0.016 Score=49.59 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=32.5
Q ss_pred ccCCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 594 NKAPKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 594 ~~~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
...+.||.|++|||.+.+.. ...|++.|.+.||+|+...
T Consensus 11 ~~LpdiFsg~~~~l~~~v~~--~~~l~RyiiAfgG~v~~~~ 49 (88)
T 3pc7_A 11 KVLLDIFTGVRLYLPPSTPD--FSRLRRYFVAFDGDLVQEF 49 (88)
T ss_dssp CCCCCCSTTCEECCCTTSTT--HHHHHHHHHHTTCEECCGG
T ss_pred CcCChhhcCeEEEccCCcCc--hhhheeeeeecCCEEeccc
Confidence 35688999999999987643 3699999999999998843
No 128
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.60 E-value=0.0062 Score=64.36 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=38.4
Q ss_pred ccccccccccccccC----ce----ecCCCCcccccccccccCC-----------CCCCCCCCCCccc
Q 038256 37 ALELKCPLCLNLFSR----PL----LLPCDHIFCNSCIPRSAQC-----------ESECPLCKSQCTY 85 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~----Pv----~l~CgHsFC~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 85 (691)
+....|+||+.++.+ |. ...|+|.|-..||.+|++. ...||.||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 355679999999876 31 2479999999999999852 1469999997753
No 129
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=94.51 E-value=0.025 Score=48.77 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=40.5
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeCC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLD 658 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~~ 658 (691)
.+.|.|..|+|+|.+.. .+++++++|+..||+|..+. +....|+|+...
T Consensus 5 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sV------------skkt~~LV~g~~ 53 (92)
T 1l7b_A 5 GEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSV------------SRKTSYLVVGEN 53 (92)
T ss_dssp CCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCC------------SSSCCCBEECSS
T ss_pred CCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcc------------cCCeeEEEeCCC
Confidence 35799999999999887 89999999999999999875 334567777743
No 130
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.33 E-value=0.0075 Score=69.55 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=0.0
Q ss_pred ccEEEEEcCCCHHHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhC
Q 038256 486 KEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 486 ~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g 564 (691)
.+..|++||--...|+.+.+++..+||++.++++.++++||++... .-|+-.|...|+.||+.+|+.+.++.+
T Consensus 589 ~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~------gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 589 SGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVGENP------GSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEECCCC------ChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 3444444554333899999999999999999999999999999653 258889999999999999999888654
No 131
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=94.23 E-value=0.069 Score=48.87 Aligned_cols=37 Identities=27% Similarity=0.510 Sum_probs=32.0
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..||+|+.|||.| +....+..|..+|+.+||+|+...
T Consensus 38 ~~lF~g~~i~i~G-~~~~~~~~L~~~i~~~Gg~v~~~l 74 (132)
T 1wf6_A 38 EDLLDGCRIYLCG-FSGRKLDKLRRLINSGGGVRFNQL 74 (132)
T ss_dssp TTTTTTCEEEEES-CCSHHHHHHHHHHHHTTCEEESSC
T ss_pred ccccCCEEEEEEC-CChHHHHHHHHHHHHCCCEEeCcC
Confidence 4699999999998 456667899999999999998754
No 132
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.09 E-value=0.1 Score=46.66 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=40.6
Q ss_pred CCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeC
Q 038256 598 KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNL 657 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~ 657 (691)
..|.|.+|+|+|.+....|++++++|+..||+|..+- +....|+|+-.
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sV------------SkkTd~LV~G~ 68 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV------------SKKTNYLVMGR 68 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSC------------CSSCCEEEECS
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccc------------cCCeeEEEecC
Confidence 4699999999999887789999999999999998875 33566777774
No 133
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=93.92 E-value=0.072 Score=46.71 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
.++|.|+.|+|+|.+. ..+..|+++|+..||+|....
T Consensus 13 ~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~ 49 (107)
T 3l3e_A 13 PKPLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSF 49 (107)
T ss_dssp -CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSC
T ss_pred cCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccc
Confidence 5689999999999755 678999999999999998764
No 134
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.81 E-value=0.052 Score=47.50 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=29.8
Q ss_pred CCCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEec
Q 038256 596 APKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKS 633 (691)
Q Consensus 596 ~~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~ 633 (691)
.+.||+|+.|||... .+++.|+.+|+++||+|...
T Consensus 9 ~~~LF~g~~F~i~~e---~p~~~le~~I~~~GG~v~~~ 43 (100)
T 2ep8_A 9 HKKLFEGLKFFLNRE---VPREALAFIIRSFGGEVSWD 43 (100)
T ss_dssp SCCTTSSCEEECCSS---SCHHHHHHHHHHTTCEEECC
T ss_pred hHHHcCCcEEEEecC---CCHHHHHHHHHHcCCEEEec
Confidence 357999999999874 35789999999999999764
No 135
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.039 Score=47.68 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhcCccEeeccCCCc--eEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCCCCCcccc
Q 038256 498 EEKLLLVRFGNMIGVPVSKFWKPNV--THVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEIN 575 (691)
Q Consensus 498 ~ek~~l~~~~~~lG~~v~~~~~~~v--THlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe~yei~ 575 (691)
...+.|..++...||.|..+...+. -+.|++.. .-| +.+.|++.+|.+|+.++.+|+-++|.+.
T Consensus 30 ~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpy-----N~t---------~LpTVtpTYI~aC~~~nTLLnv~~YLvp 95 (106)
T 2l42_A 30 NDIDQLARLIRANGGEVLDSKPRESKENVFIVSPY-----NHT---------NLPTVTPTYIKACCQSNSLLNMENYLVP 95 (106)
T ss_dssp STHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTT-----CCC---------SSSBCCTTHHHHHHHSTTSCGGGGCCBC
T ss_pred hHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCC-----CCC---------CCccccHHHHHHHHhcCceecccccccC
Confidence 3568999999999999999877654 36666642 122 7889999999999999999999999997
Q ss_pred cCC
Q 038256 576 LDN 578 (691)
Q Consensus 576 ~d~ 578 (691)
.|+
T Consensus 96 ~d~ 98 (106)
T 2l42_A 96 YDN 98 (106)
T ss_dssp SCC
T ss_pred chh
Confidence 664
No 136
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.56 E-value=0.11 Score=47.30 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=32.4
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
.++|.|+.|+|+|.+ ...++.|.++|+..||+|....
T Consensus 20 ~~~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~ 56 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDW 56 (129)
T ss_dssp TTTSTTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSC
T ss_pred cccCCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCc
Confidence 458999999999965 6678999999999999998765
No 137
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=93.38 E-value=0.014 Score=67.28 Aligned_cols=71 Identities=14% Similarity=-0.109 Sum_probs=0.0
Q ss_pred ccEEEEEcCCCH-HHHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 486 KEWVFCGSALSV-EEKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 486 ~~~vi~~Sgls~-~ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
.+..|++||--. -.|+.+.+++..+||++.++++.++++||++...+ -|+-.|...|+.||+.+|+.+.+.
T Consensus 599 ~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~g------sKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 599 AGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAG------SKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCC------hHHHHHHHCCCcEEcHHHHHHHhc
Confidence 344444455433 36899999999999999999999999999996532 488899999999999999987653
No 138
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=93.06 E-value=0.13 Score=45.99 Aligned_cols=46 Identities=11% Similarity=0.273 Sum_probs=38.6
Q ss_pred CCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEe
Q 038256 598 KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYN 656 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~ 656 (691)
+.|.|.+|+|+|.+.. .++++.++|+..||+|..+- +....|+|+.
T Consensus 9 ~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sV------------skkT~~lV~g 54 (113)
T 2cok_A 9 KPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTA------------NKASLCISTK 54 (113)
T ss_dssp CSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCS------------TTCSEEECCH
T ss_pred CCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCcc------------ccCccEEEEC
Confidence 4699999999999876 78999999999999998875 3345677776
No 139
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.86 E-value=0.1 Score=46.05 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEec
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKS 633 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~ 633 (691)
.++|.|+.|+++| |....+..|+++|+..||++...
T Consensus 10 ~~~F~g~~i~~sg-~~~~~r~~l~~~i~~~GG~~~~~ 45 (109)
T 2cou_A 10 VPPFQDCILSFLG-FSDEEKHSMEEMTEMQGGSYLPV 45 (109)
T ss_dssp CCTTTTCBEEEES-SCHHHHHHHHHHHHHHTCBCCCT
T ss_pred CCcCCCeEEEecC-CCHHHHHHHHHHHHHcCCEEecc
Confidence 4689999999998 77778899999999999998753
No 140
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=92.84 E-value=0.057 Score=39.10 Aligned_cols=28 Identities=21% Similarity=-0.043 Sum_probs=24.9
Q ss_pred ccccccccccc-ccccccccCCCCCceee
Q 038256 112 LLQPVYSAFGR-HQEDNSSSGQSLSANTL 139 (691)
Q Consensus 112 ~~~~~C~~~~~-iC~~C~~~~~H~~H~~~ 139 (691)
.+.+||++|.. +|..|..+++|++|++.
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 40 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHNFL 40 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCCCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCcEe
Confidence 57899999888 99999888999999874
No 141
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.43 E-value=0.078 Score=41.97 Aligned_cols=29 Identities=3% Similarity=-0.192 Sum_probs=25.8
Q ss_pred ccccccccccc-ccccccccCCCCCceeee
Q 038256 112 LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 112 ~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
.+.+||.+|.. +|..|..+++|++|++.+
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSCEEC
T ss_pred ccceEcCcCCceeCccccCCCcCCCCCeeC
Confidence 46799999888 999998889999999866
No 142
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=91.68 E-value=0.068 Score=44.76 Aligned_cols=34 Identities=3% Similarity=-0.167 Sum_probs=28.2
Q ss_pred CCCcc----ccccccccccc-ccccccccCCCCCceeee
Q 038256 107 SPSSN----LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 107 ~~C~~----~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
..|.. .+.+||.+|.. +|..|..+++|++|++.+
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 57 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVAS 57 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCCCCCccC
Confidence 34655 36789999988 999998889999999855
No 143
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=91.49 E-value=0.068 Score=40.78 Aligned_cols=34 Identities=9% Similarity=-0.192 Sum_probs=28.3
Q ss_pred CCCcc---ccccccccccc-ccccccccCCCCCceeee
Q 038256 107 SPSSN---LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 107 ~~C~~---~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
..|.. .+.+||++|.. +|..|..+++|++|++.+
T Consensus 9 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 46 (53)
T 2did_A 9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVP 46 (53)
T ss_dssp CBCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEE
T ss_pred CcChhhCCeeeEEeCCCCeEEeccccCCCCCCCCcEee
Confidence 34554 57899999988 999998889999999865
No 144
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.42 E-value=0.69 Score=43.79 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=63.2
Q ss_pred cEEEEEcCCCHHH---HHHHHHHHhhcCccEee-ccCCCceEEEecCCCCCcccchHHHHHHHHcCCeEeehhHHHHHHH
Q 038256 487 EWVFCGSALSVEE---KLLLVRFGNMIGVPVSK-FWKPNVTHVIAATDAKGSCTRTLKVLMAILNGNWVLKIDWIKACME 562 (691)
Q Consensus 487 ~~vi~~Sgls~~e---k~~l~~~~~~lG~~v~~-~~~~~vTHlI~~~~~~~~~~RT~K~L~Aia~G~wIVs~~Wl~~c~~ 562 (691)
++.+|.--|++-. --++.+.....|+.-.. .+.-++||.|+++-.+- .....++.|--+.++||.|+|+.+|--
T Consensus 164 gitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldne--esneelirakhnnipivrpewvracev 241 (290)
T 4gns_A 164 GITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNE--ESNEELIRAKHNNIPIVRPEWVRACEV 241 (290)
T ss_dssp TCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTC--TTCHHHHHHHHTTCCEECTHHHHHHHH
T ss_pred CceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcc--cchHHHHhhhccCCCccCHHHHHHHhh
Confidence 3445555555310 13566777778876543 56667999999863221 345688999999999999999999999
Q ss_pred hCCCCCCCCccccc
Q 038256 563 AMNPVGEEPYEINL 576 (691)
Q Consensus 563 ~g~~vdEe~yei~~ 576 (691)
..+++--..|-+..
T Consensus 242 ekrivgvrgfylda 255 (290)
T 4gns_A 242 EKRIVGVRGFYLDA 255 (290)
T ss_dssp TTSCCCSGGGBTTS
T ss_pred hheeeeeeeEEEcc
Confidence 99999888887743
No 145
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.08 E-value=0.11 Score=40.80 Aligned_cols=33 Identities=12% Similarity=-0.075 Sum_probs=28.0
Q ss_pred CCcc---ccccccccccc-ccccccccCCCCCceeee
Q 038256 108 PSSN---LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 108 ~C~~---~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
.|.. .+.+||++|.. +|..|..+++|++|++.+
T Consensus 16 ~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~ 52 (59)
T 2yrg_A 16 HCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFP 52 (59)
T ss_dssp BCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCCEEE
T ss_pred cChhhCceeeeecCCCCcEEecccCCCCcCCCCcEee
Confidence 4654 57899999988 999998889999999865
No 146
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=89.55 E-value=0.081 Score=39.51 Aligned_cols=29 Identities=3% Similarity=-0.192 Sum_probs=25.5
Q ss_pred ccccccccccc-ccccccccCCCCCceeee
Q 038256 112 LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 112 ~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
.+.+||++|.. +|..|...+.|++|.+.+
T Consensus 16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 45 (48)
T 3ddt_A 16 KINIYCLTCEVPTCSMCKVFGIHKACEVAP 45 (48)
T ss_dssp BCCEEETTTTEEECHHHHHHSTTTTSCEEE
T ss_pred cccEEcCCCCeeEcccccCCCcCCCCcEEe
Confidence 46799999988 999998889999999865
No 147
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=88.75 E-value=0.24 Score=43.81 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=36.6
Q ss_pred cccccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCC
Q 038256 396 SKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSS 448 (691)
Q Consensus 396 ~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~ 448 (691)
....|.+|+..|--|.|....|.++||+.|.... . ......||+.|.-
T Consensus 14 ~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~-~----~P~g~W~Cp~c~C 61 (107)
T 4gne_A 14 HEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLT-Q----PPYGKWECPWHQC 61 (107)
T ss_dssp SCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCS-S----CCSSCCCCGGGBC
T ss_pred CCCCCCcCCCCCcEeEECCCCCCcccccccCcCC-c----CCCCCEECCCCCC
Confidence 3567999998888889998899999999998632 1 1234578888863
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=87.47 E-value=0.75 Score=40.92 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=54.8
Q ss_pred ccccccccCcCC----cccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCCcccCHHHHHHhccc----cc
Q 038256 328 YICGFCQSSRIS----EVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGDTVKNLKAELARGSK----LK 399 (691)
Q Consensus 328 ~~C~lC~~~~~~----~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~~l~~l~~~~~r~~~----l~ 399 (691)
..|.||...+.. ...|.|+.... =....|..|+-..++. +..+....|. ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~------------C~~~~H~~Cl~~~~~~---------~~~~~~~~W~C~~C~~ 60 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD------------CGRSGHPTCLQFTLNM---------TEAVKTYKWQCIECKS 60 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS------------SCCEECTTTTTCCHHH---------HHHHHHTTCCCGGGCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC------------CCCccchhhCCChhhh---------hhccCCCccCccccCc
Confidence 468899865421 22456665432 2356899998543321 1112222332 26
Q ss_pred cCcCCCC---CceeccCccCcccceecccccccCccccccCCceEeccccC
Q 038256 400 CSRCGLK---GAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 400 C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
|.+|++. |.-|.|. .|.+.||..|..-. +........||+...
T Consensus 61 C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~pp---l~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 61 CILCGTSENDDQLLFCD--DCDRGYHMYCLNPP---VAEPPEGSWSCHLCW 106 (114)
T ss_dssp CTTTTCCTTTTTEEECS--SSCCEEETTTSSSC---CSSCCSSCCCCHHHH
T ss_pred cCcccccCCCCceEEcC--CCCccccccccCCC---ccCCCCCCeECcccc
Confidence 8889885 6667887 79999999998743 111223356777543
No 149
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.08 E-value=0.13 Score=40.08 Aligned_cols=33 Identities=6% Similarity=-0.160 Sum_probs=27.2
Q ss_pred CCcc---ccccccccccc-ccccccccCCCCCceeee
Q 038256 108 PSSN---LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 108 ~C~~---~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
.|.. .+.+||++|.. +|..|..+++|++|++.+
T Consensus 20 ~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTCCBCCEEETTTTEEECHHHHHSHHHHSSCEEC
T ss_pred cChhhCceeeEEcCCCCcEEecccCCCCCCCCCcEec
Confidence 3554 57899999988 999998889999998743
No 150
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.85 E-value=0.33 Score=43.11 Aligned_cols=92 Identities=23% Similarity=0.491 Sum_probs=54.0
Q ss_pred cccccccccCcCCc---ccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCCcccCHHHHH-Hhcc---cc-
Q 038256 327 NYICGFCQSSRISE---VTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGDTVKNLKAEL-ARGS---KL- 398 (691)
Q Consensus 327 ~~~C~lC~~~~~~~---~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~~l~~l~~~~-~r~~---~l- 398 (691)
...|.||...+... ..|.|+.-.. =....|..|+-..|++ ...+ ...| .=
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~------------C~~~~H~~Cl~~~~~~----------~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCAD------------CGNSGHPSCLKFSPEL----------TVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTT------------TCCEECHHHHTCCHHH----------HHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhh------------cCCCCCCchhcCCHHH----------HHHhhccccccccCC
Confidence 36899998764322 3345665433 3467899998654332 1122 2222 11
Q ss_pred ccCcCCCCC----ceeccCccCcccceecccccccCccccccCCceEeccc
Q 038256 399 KCSRCGLKG----AALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPV 445 (691)
Q Consensus 399 ~C~~C~~~G----A~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~ 445 (691)
.|.+|+..| .-|.|. .|.++||..|..-. +........||+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd--~C~~~yH~~Cl~p~---l~~~P~~~W~C~~ 108 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCD--SCDRGFHMECCDPP---LTRMPKGMWICQI 108 (112)
T ss_dssp CBTTTCCCCCTTCCCEECT--TTCCEECGGGCSSC---CSSCCSSCCCCTT
T ss_pred ccccccCcCCCccceEEcC--CCCCeeecccCCCC---CCCCCCCCeECCC
Confidence 578888765 556776 49999999998532 1112233567764
No 151
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=84.60 E-value=1.8 Score=42.03 Aligned_cols=48 Identities=21% Similarity=0.435 Sum_probs=33.8
Q ss_pred cccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCCCC
Q 038256 398 LKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSVK 450 (691)
Q Consensus 398 l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~~ 450 (691)
-.|.+|+..|--|.|. +|.++||..|..-. .........+|+.-....
T Consensus 3 ~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~---l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCN--QCEFCFHLDCHLPA---LQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCT--TTCCBCCSTTSTTC---CSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECC--CCCchhccccCCCC---cccCCCCCCCCcCccCCC
Confidence 4699999988877775 69999999998642 111123346788877643
No 152
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.23 E-value=0.53 Score=37.85 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=35.2
Q ss_pred ccccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCCCCC
Q 038256 397 KLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSVKF 451 (691)
Q Consensus 397 ~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~~~ 451 (691)
.-+|.+|+..|--|.|. .|.++||..|..-. +...-....||+.-+....
T Consensus 12 ~~~C~vC~~~~~ll~Cd--~C~~~~H~~Cl~P~---l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCT--HCAAAFHWRCHFPA---GTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TCCCTTTSCCTTCEECS--SSCCEECHHHHCTT---TCCCCSSSCCCTTTTTCCC
T ss_pred CCCcCCCCCCCeEEECC--CCCCceecccCCCc---cCcCCCCCEECccccCCCc
Confidence 35699999988888886 69999999997532 1112234578888765433
No 153
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=83.99 E-value=0.51 Score=37.00 Aligned_cols=47 Identities=28% Similarity=0.507 Sum_probs=34.9
Q ss_pred ccccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCC
Q 038256 397 KLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSS 448 (691)
Q Consensus 397 ~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~ 448 (691)
...|.+|+..|--|.|. +|.++||..|..-. .........||+....
T Consensus 5 ~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~pp---l~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPP---LKTIPKGMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCCSSCEECS--SSSCEECGGGSSSC---CSSCCCSCCCCHHHHH
T ss_pred CCCCcCCCCCCcEEEcC--CCCcCEECCcCCCC---cCCCCCCceEChhccC
Confidence 46799999999889997 79999999999743 1112234678887654
No 154
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.73 E-value=0.59 Score=37.42 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=36.7
Q ss_pred ccccccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCCCC
Q 038256 395 GSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSVK 450 (691)
Q Consensus 395 ~~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~~ 450 (691)
.....|.+|+..|--|.|. +|.++||..|..-. .........||+.-...+
T Consensus 6 ~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~pp---l~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCD--GCPRAFHLACLSPP---LREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCCSSCEECS--SCCCEECTTTSSSC---CSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCCCCEEEcC--CCChhhcccccCCC---cCcCCCCCeECccccCcc
Confidence 3456899999999888887 69999999998742 111233467888776543
No 155
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.71 E-value=0.99 Score=38.41 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=36.2
Q ss_pred ccccccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCCC
Q 038256 395 GSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSV 449 (691)
Q Consensus 395 ~~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~ 449 (691)
.....|.+|+..|--|-|. +|.++||..|-.-. .........||+.....
T Consensus 23 ~n~~~C~vC~~~g~LL~CD--~C~~~fH~~Cl~Pp---L~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCN--QCEFCFHLDCHLPA---LQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECT--TSSCEECTTSSSTT---CCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECC--CCCCceecccCCCC---CCCCcCCCcCCccccCC
Confidence 3456899999999877776 79999999998543 11123346788888754
No 156
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.67 E-value=0.6 Score=36.04 Aligned_cols=31 Identities=35% Similarity=0.704 Sum_probs=27.0
Q ss_pred cccccCcCCCCCceeccCccCcccceecccccc
Q 038256 396 SKLKCSRCGLKGAALGCYVRSCRRSYHVPCALE 428 (691)
Q Consensus 396 ~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~ 428 (691)
....|.+|+..|--|.|. .|.++||+.|..-
T Consensus 8 ~~~~C~vC~~~g~ll~Cd--~C~~~~H~~Cl~p 38 (56)
T 2yql_A 8 HEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDP 38 (56)
T ss_dssp SCCSCSSSCCSSCCEECS--SSSCEECSSSSSS
T ss_pred CCCCCccCCCCCeEEEcC--CCCcceECccCCC
Confidence 356799999999888897 7999999999974
No 157
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=83.65 E-value=0.38 Score=39.00 Aligned_cols=33 Identities=3% Similarity=-0.204 Sum_probs=27.3
Q ss_pred CCCcc---ccccccccccc-ccccccccCCCCCceeee
Q 038256 107 SPSSN---LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 107 ~~C~~---~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
..|.. .+.+||++|.. +|..|.. ++|++|++.+
T Consensus 19 ~~C~~H~e~l~lfC~~d~~~iC~~C~~-~~H~~H~~~~ 55 (72)
T 2csv_A 19 RKCPVHGKTMELFCQTDQTCICYLCMF-QEHKNHSTVT 55 (72)
T ss_dssp CBCTTTCCBCCEEESSSCCEECHHHHH-TTTSSSCEEE
T ss_pred CcCcccCCceEEEeCCCCeEEccccCC-CCCCCCCEec
Confidence 34655 57899999988 9999977 9999999865
No 158
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=83.24 E-value=3.2 Score=37.84 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCc--ccchHHHHHHHHcCCeEeehhHHHHHHHhCCCCCCCCccc
Q 038256 499 EKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGS--CTRTLKVLMAILNGNWVLKIDWIKACMEAMNPVGEEPYEI 574 (691)
Q Consensus 499 ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~--~~RT~K~L~Aia~G~wIVs~~Wl~~c~~~g~~vdEe~yei 574 (691)
.++.|++-...+||+|+.-|+.+|||||+..+-+.. +.-+-=+..|...|.-|=+++=|.-=++. ++.+..++
T Consensus 31 ~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~~---Ld~d~~~l 105 (134)
T 3oq4_A 31 RRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN---LDVDLDHL 105 (134)
T ss_dssp HHHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHH---TTCCHHHH
T ss_pred HHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHHh---cCCChhhc
Confidence 457778888899999999999999999998643221 12222357788889999999999877776 36555443
No 159
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=82.56 E-value=4 Score=37.91 Aligned_cols=93 Identities=17% Similarity=0.067 Sum_probs=59.4
Q ss_pred CCCCCCCCccEEEEEcCCC---HH-------HHHHHHHHHhhcCccEeeccCCCceEEEecCCCCCc--ccchHHHHHHH
Q 038256 478 WGSSPNKAKEWVFCGSALS---VE-------EKLLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGS--CTRTLKVLMAI 545 (691)
Q Consensus 478 ~~~s~~~~~~~vi~~Sgls---~~-------ek~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~--~~RT~K~L~Ai 545 (691)
|...=.....+.|-+++.. .. .++.|++-+..+||+|+.-|+.+|||||+..+-+.. +.-|-=+..|.
T Consensus 17 WrkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr 96 (151)
T 3oq0_A 17 RGSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAK 96 (151)
T ss_dssp ----CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHH
T ss_pred HHHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHH
Confidence 4333333445555555532 11 235566677889999999999999999998643221 12233457788
Q ss_pred HcCCeEeehhHHHHHHHhCCCCCCCCcc
Q 038256 546 LNGNWVLKIDWIKACMEAMNPVGEEPYE 573 (691)
Q Consensus 546 a~G~wIVs~~Wl~~c~~~g~~vdEe~ye 573 (691)
..|.-|=+++=|..=++. ++.+..+
T Consensus 97 ~~~mKIWs~EKl~RfL~~---Ld~d~~~ 121 (151)
T 3oq0_A 97 KNYMKVWSYEKAARFLKN---LDVDLDH 121 (151)
T ss_dssp HTTCEEEEHHHHHHHHHT---TTCCSCC
T ss_pred HcCCeeecHHHHHHHHHh---cCCChhh
Confidence 889999999999877766 2555443
No 160
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.45 E-value=0.58 Score=36.91 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=33.9
Q ss_pred cccccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccC
Q 038256 396 SKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 396 ~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
....|.+|+..|--|.|. +|.++||+.|..-. .........||+.-.
T Consensus 10 ~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~p~---l~~~p~g~W~C~~C~ 56 (61)
T 2l5u_A 10 HQDYCEVCQQGGEIILCD--TCPRAYHMVCLDPD---MEKAPEGKWSCPHCE 56 (61)
T ss_dssp CCSSCTTTSCCSSEEECS--SSSCEEEHHHHCTT---CCSCCCSSCCCTTGG
T ss_pred CCCCCccCCCCCcEEECC--CCChhhhhhccCCC---CCCCCCCceECcccc
Confidence 456899999999888887 79999999998753 111123456776543
No 161
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=81.40 E-value=0.39 Score=35.97 Aligned_cols=28 Identities=7% Similarity=-0.098 Sum_probs=24.1
Q ss_pred ccccccccccc-ccccccccCCCCCceeee
Q 038256 112 LLQPVYSAFGR-HQEDNSSSGQSLSANTLV 140 (691)
Q Consensus 112 ~~~~~C~~~~~-iC~~C~~~~~H~~H~~~~ 140 (691)
.+.+||+++.. +|..|.. ++|++|++.+
T Consensus 16 ~l~lfC~~~~~~iC~~C~~-~~H~~H~~~~ 44 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQL-NAHKDHQYQF 44 (50)
T ss_dssp BCCEEETTTTEEECHHHHH-TTTTTCCEEE
T ss_pred CEEEEeCCCCEEEecccCC-CcCCCCceec
Confidence 46799999888 9999977 6999999865
No 162
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.32 E-value=4 Score=39.08 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=34.7
Q ss_pred cccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCCCCC
Q 038256 398 LKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSVKF 451 (691)
Q Consensus 398 l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~~~ 451 (691)
-.|.+|+..|--|.|. +|.++||..|-.-. .........+|+.-.....
T Consensus 5 ~~C~~C~~~g~ll~Cd--~C~~~~H~~C~~p~---l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 5 DWCAVCQNGGELLCCE--KCPKVFHLSCHVPT---LTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSCTTTCCCSSCEECS--SSSCEECTTTSSSC---CSSCCSSCCCCTTTSCSSS
T ss_pred CccccCCCCCeeeecC--CCCcccCccccCCC---CCCCCCCCEECccccCccc
Confidence 4699999988877776 59999999997532 1112344578987766443
No 163
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=80.86 E-value=0.76 Score=36.97 Aligned_cols=30 Identities=27% Similarity=0.719 Sum_probs=25.2
Q ss_pred ccccCcCCCC---CceeccCccCcccceeccccc
Q 038256 397 KLKCSRCGLK---GAALGCYVRSCRRSYHVPCAL 427 (691)
Q Consensus 397 ~l~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~ 427 (691)
.+.| +|+.. |.-|+|....|...||+.|.-
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg 42 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL 42 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSC
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCC
Confidence 3567 79886 888999877899999999974
No 164
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=80.74 E-value=3 Score=39.13 Aligned_cols=73 Identities=19% Similarity=0.033 Sum_probs=48.3
Q ss_pred cEEEEEcCCCHH-----HH-------HHHHHHHhhcCccEeeccCCCceEEEecCCCCCc--ccchHHHHHHHHcCCeEe
Q 038256 487 EWVFCGSALSVE-----EK-------LLLVRFGNMIGVPVSKFWKPNVTHVIAATDAKGS--CTRTLKVLMAILNGNWVL 552 (691)
Q Consensus 487 ~~vi~~Sgls~~-----ek-------~~l~~~~~~lG~~v~~~~~~~vTHlI~~~~~~~~--~~RT~K~L~Aia~G~wIV 552 (691)
.+||.+-+.+++ .+ +.+.+-+..|||.++.-|+.+|||||+..+-+.. +.-+-=|..|-..+.-|=
T Consensus 62 ~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~~~mKVW 141 (160)
T 3qbz_A 62 DSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVW 141 (160)
T ss_dssp HCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHHTTCEEE
T ss_pred CcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHHcCceec
Confidence 678888776643 22 3454566789999999999999999998754331 112223555666676666
Q ss_pred ehhHHHH
Q 038256 553 KIDWIKA 559 (691)
Q Consensus 553 s~~Wl~~ 559 (691)
+++=+..
T Consensus 142 ~yeK~~R 148 (160)
T 3qbz_A 142 SYEKAAR 148 (160)
T ss_dssp EHHHHHH
T ss_pred chHHHHH
Confidence 6655543
No 165
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.33 E-value=0.57 Score=40.60 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=33.0
Q ss_pred cccCcCCCC---CceeccCccCcccceecccccccCccccccCCceEeccccCCCCCC
Q 038256 398 LKCSRCGLK---GAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSVKFP 452 (691)
Q Consensus 398 l~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~~~~ 452 (691)
++| +|+.. |--|+|. .|.++||+.|..-. .....-..||+.-.+...+
T Consensus 29 vrC-iC~~~~~~~~mi~Cd--~C~~w~H~~C~~~~----~~~~p~~w~C~~C~~~~~~ 79 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCD--KCSVWQHIDCMGID----RQHIPDTYLCERCQPRNLD 79 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBT--TTCBEEETTTTTCC----TTSCCSSBCCTTTSSSCCC
T ss_pred EEe-ECCCccCCCcEEEcC--CCCCcCcCcCCCCC----ccCCCCCEECCCCcCCCCC
Confidence 346 68776 7778996 69999999998543 1111125899998875543
No 166
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.58 E-value=0.88 Score=37.64 Aligned_cols=34 Identities=26% Similarity=0.577 Sum_probs=28.8
Q ss_pred ccccccCcCCCC---CceeccCccCcccceeccccccc
Q 038256 395 GSKLKCSRCGLK---GAALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 395 ~~~l~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~~ 429 (691)
...+.| +|++. |.-|+|.+..|...||+.|.--.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~ 50 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILP 50 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccc
Confidence 456778 79997 88899998899999999998654
No 167
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.39 E-value=1.7 Score=34.18 Aligned_cols=48 Identities=29% Similarity=0.460 Sum_probs=34.5
Q ss_pred cccccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCC
Q 038256 396 SKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSS 448 (691)
Q Consensus 396 ~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~ 448 (691)
....|.+|+..|--|.|. +|.++||..|..-. .........||+.-..
T Consensus 8 ~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~pp---l~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCD--TCPSSYHIHCLNPP---LPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCSSCTTTCCCSSCBCCS--SSCCCBCSSSSSSC---CSSCCSSCCCCTTTTT
T ss_pred CCCcCCCCCCCCCEEEcC--CCCHHHcccccCCC---cCcCCCCccCChhhcC
Confidence 356799999988888887 59999999998743 1112234578887654
No 168
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=78.35 E-value=0.94 Score=35.88 Aligned_cols=39 Identities=21% Similarity=0.524 Sum_probs=27.4
Q ss_pred HHHHhccccccCcCCC--CCceeccCccCcc-cceeccccccc
Q 038256 390 AELARGSKLKCSRCGL--KGAALGCYVRSCR-RSYHVPCALEI 429 (691)
Q Consensus 390 ~~~~r~~~l~C~~C~~--~GA~I~C~~~~C~-~~fH~~CA~~~ 429 (691)
..+.....+.| +|++ .|--|+|..-.|. ..||+.|.--.
T Consensus 4 ~~~d~~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~ 45 (62)
T 2g6q_A 4 FAIDPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLT 45 (62)
T ss_dssp ------CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS
T ss_pred cccCCCCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcC
Confidence 33444455677 8999 4878999987898 99999999754
No 169
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=76.13 E-value=0.63 Score=39.81 Aligned_cols=48 Identities=23% Similarity=0.507 Sum_probs=37.4
Q ss_pred ccccccccccccccCceecCCC-CcccccccccccCCCCCCCCCCCCcccc
Q 038256 37 ALELKCPLCLNLFSRPLLLPCD-HIFCNSCIPRSAQCESECPLCKSQCTYA 86 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~Cg-HsFC~~Ci~~~~~~~~~CP~Cr~~~~~~ 86 (691)
---+.|-.|-...+ -.+.|. |.+|..|+...+..+..||+|..++..+
T Consensus 26 ~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 34466888876555 355665 9999999999999999999999888543
No 170
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.59 E-value=4.3 Score=39.67 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=33.7
Q ss_pred ccccCcCCCCCceeccCccCcccceecccccccCccccccCCceEeccccCCC
Q 038256 397 KLKCSRCGLKGAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSV 449 (691)
Q Consensus 397 ~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~ 449 (691)
.-.|.+|+..|--|.|. +|.++||..|..-. .........||+.=...
T Consensus 7 ~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~---l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 7 EDWCAVCQNGGDLLCCE--KCPKVFHLTCHVPT---LLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSBTTTCCCEEEEECS--SSSCEECTTTSSSC---CSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCceEEcC--CCCCccCCccCCCC---CCCCCCCCEEeCceeCc
Confidence 45699999988877775 59999999997532 11123445788865543
No 171
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=73.45 E-value=1.5 Score=44.24 Aligned_cols=47 Identities=21% Similarity=0.478 Sum_probs=38.0
Q ss_pred ccccccccccccCceec-CCCCcccccccccccCC--CCCCCCCCCCccc
Q 038256 39 ELKCPLCLNLFSRPLLL-PCDHIFCNSCIPRSAQC--ESECPLCKSQCTY 85 (691)
Q Consensus 39 ~l~CpIC~e~~~~Pv~l-~CgHsFC~~Ci~~~~~~--~~~CP~Cr~~~~~ 85 (691)
...|.||.++...-+.- .|+|.|=..|+..|++. ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 46699999999865544 39999999999999865 4699999987643
No 172
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.14 E-value=1.3 Score=33.26 Aligned_cols=44 Identities=23% Similarity=0.606 Sum_probs=29.7
Q ss_pred ccCcCCCCC---ceeccCccCcccceecccccccCccccccCCceEeccccC
Q 038256 399 KCSRCGLKG---AALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 399 ~C~~C~~~G---A~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
.|.+|++.| --|.|. +|.+.||..|..-. .........||+.-.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~---l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPA---LYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTT---CCSCCSSCCSCTTTS
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCCC---cCCCCCCcEECcCcc
Confidence 589999875 467887 79999999998532 111123356776543
No 173
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=72.71 E-value=1.8 Score=46.16 Aligned_cols=65 Identities=20% Similarity=0.519 Sum_probs=50.1
Q ss_pred ccccccccccccccccCce-ecCCCCccccccccccc-----CCCCCCCCCCCCccccCCCchHHHHHHHHH
Q 038256 35 KLALELKCPLCLNLFSRPL-LLPCDHIFCNSCIPRSA-----QCESECPLCKSQCTYADLRPLAFLENIIAI 100 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv-~l~CgHsFC~~Ci~~~~-----~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~ 100 (691)
.+.-.|.||+=...+..|+ ...|.|.-|..-. .++ .....||+|.+.+...+|..+.++..++..
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHH-HHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 4455689999999999998 6689998666432 111 257899999999999999998888777543
No 174
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=72.28 E-value=8.3 Score=33.71 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCCCCceEEEecCcCc---ccHHHHHHHHHhCCCEEEecCc
Q 038256 597 PKLFDGLSFYFSGNFML---GYKEDLQSLVITAGGTIWKSEG 635 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~---~~k~~L~~LI~~~GG~Vl~~~~ 635 (691)
.++|+|+.+||.+.... ...+.+..+++..||+|.....
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~ 46 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFN 46 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCC
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccC
Confidence 46999999999764321 2347899999999999998873
No 175
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=72.15 E-value=2.7 Score=41.63 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcCccEeec--cC--------CCceEEEecCCCCCcccchHHHHHHH--HcCCeEeehhHHHHHHHhC
Q 038256 497 VEEKLLLVRFGNMIGVPVSKF--WK--------PNVTHVIAATDAKGSCTRTLKVLMAI--LNGNWVLKIDWIKACMEAM 564 (691)
Q Consensus 497 ~~ek~~l~~~~~~lG~~v~~~--~~--------~~vTHlI~~~~~~~~~~RT~K~L~Ai--a~G~wIVs~~Wl~~c~~~g 564 (691)
...++.|.++++..||++... +. +.-.+||+.. ++-.. -.+|...+ ..+..||+.+||.+++-++
T Consensus 128 ~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~-~d~~~--~~~f~~~~~~~~~~~i~~~e~ll~~il~q 204 (220)
T 3l41_A 128 PENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCN-EDSHI--WTNFLDNASQNKTIFLQNYDWLIKTVLRQ 204 (220)
T ss_dssp GGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECG-GGHHH--HTTTHHHHTTCTTEEEEEHHHHHHHHHHT
T ss_pred CCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeC-CcchH--HHHhhccccccceEEEechhHHHHHHHHH
Confidence 334789999999999999881 11 1225777763 22211 12232222 2356799999999999888
Q ss_pred CCCCCCCc
Q 038256 565 NPVGEEPY 572 (691)
Q Consensus 565 ~~vdEe~y 572 (691)
++--++.+
T Consensus 205 ~l~~~~~~ 212 (220)
T 3l41_A 205 EIDVNDRI 212 (220)
T ss_dssp CCCTTCCB
T ss_pred HcCcchHH
Confidence 77555544
No 176
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=70.41 E-value=4.7 Score=35.49 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=56.1
Q ss_pred CcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCCcccCHHHHHHhccccccCcCCC
Q 038256 326 NNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGDTVKNLKAELARGSKLKCSRCGL 405 (691)
Q Consensus 326 ~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~~l~~l~~~~~r~~~l~C~~C~~ 405 (691)
....|..|+. .|.|+...+ ..=..|.|..|+.. ..+ .+--|.-..-.|..|++
T Consensus 14 ~~~~C~~C~~------~G~ll~CD~----------~~Cp~~fH~~Cl~L-~~~----------P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 14 HEDYCFQCGD------GGELVMCDK----------KDCPKAYHLLCLNL-TQP----------PYGKWECPWHQCDECSS 66 (107)
T ss_dssp SCSSCTTTCC------CSEEEECCS----------TTCCCEECTGGGTC-SSC----------CSSCCCCGGGBCTTTCS
T ss_pred CCCCCCcCCC------CCcEeEECC----------CCCCcccccccCcC-CcC----------CCCCEECCCCCCCcCCC
Confidence 4467999983 467777531 12346999999861 111 11112223446888888
Q ss_pred CCceeccCccCcccceecccccccCcccccc-CCceEeccccCC
Q 038256 406 KGAALGCYVRSCRRSYHVPCALEISECRWDT-ENFLVLCPVHSS 448 (691)
Q Consensus 406 ~GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~-~~~~~~C~~H~~ 448 (691)
.. .+.|.. |.++||.-|...+ ++.. ....+.|..|-+
T Consensus 67 ~~-~~~C~~--Cp~sfC~~c~~g~---l~~~~~~~~~c~~~~~~ 104 (107)
T 4gne_A 67 AA-VSFCEF--CPHSFCKDHEKGA---LVPSALEGRLCCSEHDP 104 (107)
T ss_dssp BC-CEECSS--SSCEECTTTCTTS---CEECTTTTCEECTTSCT
T ss_pred CC-CcCcCC--CCcchhhhccCCc---ceecCCCCceecCCCCC
Confidence 74 488864 9999999998543 3322 344477888865
No 177
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=69.53 E-value=5.1 Score=35.75 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=28.7
Q ss_pred CCCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..||+|.+|+|... .. .+.|..+|..|||...--.
T Consensus 11 ~~LF~GKtFvFLn~--KQ-~kkl~~aV~~~GG~~~l~~ 45 (118)
T 2k2w_A 11 KSIFKDKVFLFLNA--KQ-YKKLSPAVLFGGGKTDLLM 45 (118)
T ss_dssp SCSSTTCEEEESCS--ST-HHHHHHHHHHTTCEEECCS
T ss_pred HhhccCCEEEEeCH--HH-HHHHHHHHHhcCceEEecc
Confidence 56999999999853 23 3689999999999998774
No 178
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=68.03 E-value=3 Score=35.57 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=33.2
Q ss_pred HHHHHHhccccccCcCCCC--CceeccCccCcc-cceecccccccCccccccCCceEeccc
Q 038256 388 LKAELARGSKLKCSRCGLK--GAALGCYVRSCR-RSYHVPCALEISECRWDTENFLVLCPV 445 (691)
Q Consensus 388 l~~~~~r~~~l~C~~C~~~--GA~I~C~~~~C~-~~fH~~CA~~~~g~~~~~~~~~~~C~~ 445 (691)
+.........+.| +|++. |--|+|..-.|. .+||+.|.--. . ...-..||+.
T Consensus 17 ~~~~~~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~-~----~p~~~W~Cp~ 71 (90)
T 2jmi_A 17 VTEGNNNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLK-Q----APKGKWYCSK 71 (90)
T ss_dssp -------CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCS-S----CTTSCCCSSH
T ss_pred cCCCCCCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCC-c----CCCCCccCCh
Confidence 3344455556778 89985 877899887787 79999999643 1 1123678876
No 179
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.98 E-value=3 Score=32.77 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=32.6
Q ss_pred ccccCcCCCC----CceeccCccCcccceecccccccCccccccCCceEeccccCC
Q 038256 397 KLKCSRCGLK----GAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSS 448 (691)
Q Consensus 397 ~l~C~~C~~~----GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~ 448 (691)
...|.+|+++ +--|+|. .|...||+.|.--... ... .....+|+.-..
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~-~~~-~~~~~~C~~C~~ 57 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPA-RAE-HIKQYKCPSCSN 57 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTT-GGG-GCSSCCCHHHHT
T ss_pred CCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChh-Hhc-CCCcEECCCCcC
Confidence 4578899987 4568998 7999999999965411 110 123567776654
No 180
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=67.84 E-value=5 Score=42.97 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCCCCceEEEecCcCc---ccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFML---GYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~---~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..+|.|+.|+|+|.+.. +.+..+.++|+..||++....
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~v 320 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF 320 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSS
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcC
Confidence 36899999999997643 234799999999999999876
No 181
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=67.37 E-value=2.9 Score=36.63 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=35.8
Q ss_pred ccccCcCCCC----CceeccCccCcccceecccccccCccc--c-ccCCceEeccccCC
Q 038256 397 KLKCSRCGLK----GAALGCYVRSCRRSYHVPCALEISECR--W-DTENFLVLCPVHSS 448 (691)
Q Consensus 397 ~l~C~~C~~~----GA~I~C~~~~C~~~fH~~CA~~~~g~~--~-~~~~~~~~C~~H~~ 448 (691)
...|.+|+++ |--|+|. ..|...||+.|.--...-. + ...+-..+|+.-..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 3579999998 6678998 5899999999986541100 0 01336788987765
No 182
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=66.88 E-value=3.3 Score=44.05 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=49.6
Q ss_pred ccccccccccccccccCce-ecCCCCccccccccccc-----CCCCCCCCCCCCccccCCCchHHHHHHHH
Q 038256 35 KLALELKCPLCLNLFSRPL-LLPCDHIFCNSCIPRSA-----QCESECPLCKSQCTYADLRPLAFLENIIA 99 (691)
Q Consensus 35 ~l~e~l~CpIC~e~~~~Pv-~l~CgHsFC~~Ci~~~~-----~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~ 99 (691)
.+.-.|.||+=...+..|+ ...|.|.-|-.-. .++ .....||+|.+.+...+|..+.++..++.
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 3455688999999999998 6689998665432 111 24789999999999999999888877764
No 183
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.85 E-value=7.6 Score=34.82 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=31.0
Q ss_pred CCCCCCceEEEecCcCc-ccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFML-GYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~-~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..+|.|+.+||...-.. ..++.+.++++..||+|....
T Consensus 18 ~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~l 56 (120)
T 2coe_A 18 DIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENEL 56 (120)
T ss_dssp CCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSC
T ss_pred ccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeecc
Confidence 35999999999754333 356799999999999999876
No 184
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=64.42 E-value=3.9 Score=32.32 Aligned_cols=30 Identities=23% Similarity=0.563 Sum_probs=25.3
Q ss_pred ccccCcCCCC-----CceeccCccCcccceecccccc
Q 038256 397 KLKCSRCGLK-----GAALGCYVRSCRRSYHVPCALE 428 (691)
Q Consensus 397 ~l~C~~C~~~-----GA~I~C~~~~C~~~fH~~CA~~ 428 (691)
...|.+|+.. |.-|.|. +|.++||..|-.-
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCC
Confidence 4689999987 6778886 7999999999864
No 185
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.98 E-value=3.6 Score=35.13 Aligned_cols=46 Identities=24% Similarity=0.427 Sum_probs=33.1
Q ss_pred cccCcCCCCCc---eeccCccCcccceecccccccCccccccCCceEeccccCC
Q 038256 398 LKCSRCGLKGA---ALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSS 448 (691)
Q Consensus 398 l~C~~C~~~GA---~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~ 448 (691)
..|.+|+..|. -|.|. .|.+.||..|..-. +........||+....
T Consensus 17 ~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Pp---l~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPP---LPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSC---CSSCCSSCCCCHHHHH
T ss_pred CCCccCCCcCCCCCEEEcC--CCCchhccccCCCC---cccCCCCCcCCccCcC
Confidence 46999999864 67786 69999999999632 1112334678988765
No 186
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=63.32 E-value=3.3 Score=32.30 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=26.7
Q ss_pred cccccCcCCCC--CceeccCccCcc-cceeccccccc
Q 038256 396 SKLKCSRCGLK--GAALGCYVRSCR-RSYHVPCALEI 429 (691)
Q Consensus 396 ~~l~C~~C~~~--GA~I~C~~~~C~-~~fH~~CA~~~ 429 (691)
....| +|++. |--|+|....|. ..||+.|..-.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~ 43 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLT 43 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcc
Confidence 34567 89994 878999988899 69999999754
No 187
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=62.77 E-value=4.2 Score=32.96 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=33.1
Q ss_pred cccccCcCCCC--CceeccCccCcc-cceecccccccCccccccCCceEeccccC
Q 038256 396 SKLKCSRCGLK--GAALGCYVRSCR-RSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 396 ~~l~C~~C~~~--GA~I~C~~~~C~-~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
..+.| +|++. |--|+|....|. .+||+.|.--. . ......||+.=.
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~-~----~p~g~w~Cp~C~ 63 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT-T----KPRGKWFCPRCS 63 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCS-S----CCSSCCCCTTTS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcC-c----CCCCCEECCCCC
Confidence 34678 79995 888999988899 69999999753 1 112357787543
No 188
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=61.38 E-value=3.4 Score=33.55 Aligned_cols=45 Identities=29% Similarity=0.685 Sum_probs=31.2
Q ss_pred cccCcCCCC--C-ceeccCccCcccceecccccccCccccccCCceEeccccC
Q 038256 398 LKCSRCGLK--G-AALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 398 l~C~~C~~~--G-A~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
..|.+|++. | --|+|. +|...||+.|.--. . ........||+.-.
T Consensus 19 ~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~-~--~~~~~~~w~C~~C~ 66 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIM-A--APPEEMQWFCPKCA 66 (75)
T ss_dssp ECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCS-S--CCCSSSCCCCTTTH
T ss_pred cCCCCCCCCCCCCCEEEcC--CCCcccccccCCCC-c--cCCCCCCEEChhcc
Confidence 569999998 5 468887 59999999998654 1 11123456787543
No 189
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=61.35 E-value=3.8 Score=32.05 Aligned_cols=33 Identities=24% Similarity=0.580 Sum_probs=26.5
Q ss_pred cccccCcCCCC--CceeccCccCcc-cceeccccccc
Q 038256 396 SKLKCSRCGLK--GAALGCYVRSCR-RSYHVPCALEI 429 (691)
Q Consensus 396 ~~l~C~~C~~~--GA~I~C~~~~C~-~~fH~~CA~~~ 429 (691)
....| +|++. |--|+|..-.|. ..||+.|..-.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~ 44 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT 44 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCC
Confidence 34667 89994 888999887798 79999999743
No 190
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=60.18 E-value=4.9 Score=30.36 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=23.9
Q ss_pred ccCcCCCC----CceeccCccCcccceeccccccc
Q 038256 399 KCSRCGLK----GAALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 399 ~C~~C~~~----GA~I~C~~~~C~~~fH~~CA~~~ 429 (691)
.|.+|+++ +--|+|.. .|...||+.|.--.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~ 37 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVS 37 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCC
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCC
Confidence 47789887 22589987 89999999998653
No 191
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.01 E-value=3.3 Score=35.02 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=32.3
Q ss_pred ccccCcCCCCC-----ceeccCccCcccceecccccccCccccccCCceEeccccCC
Q 038256 397 KLKCSRCGLKG-----AALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSS 448 (691)
Q Consensus 397 ~l~C~~C~~~G-----A~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~ 448 (691)
...|.+|+..| --|.|. +|..+||..|-.-. . . ..-..||+.-..
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~-~--v--P~g~W~C~~C~~ 74 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP-Y--I--PEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCS-S--C--CSSCCCCHHHHH
T ss_pred CCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCC-c--c--CCCceECccccC
Confidence 46899999887 667886 79999999998643 1 1 233567775543
No 192
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.88 E-value=4.3 Score=34.65 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=33.1
Q ss_pred cccccCcCCCC--CceeccCccCcc-cceecccccccCccccccCCceEeccccC
Q 038256 396 SKLKCSRCGLK--GAALGCYVRSCR-RSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 396 ~~l~C~~C~~~--GA~I~C~~~~C~-~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
..+.| +|++. |--|+|....|. .+||+.|.--. . ...-..||+.=.
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~-~----~p~g~W~Cp~C~ 83 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT-T----KPRGKWFCPRCS 83 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCS-S----CCCSSCCCTTTC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcC-c----CCCCCEECcCcc
Confidence 34667 99995 888999988898 79999999754 1 112346887543
No 193
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=59.36 E-value=4.1 Score=33.09 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.3
Q ss_pred ccccCcCCCCC-----ceeccCccCcccceeccccccc
Q 038256 397 KLKCSRCGLKG-----AALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 397 ~l~C~~C~~~G-----A~I~C~~~~C~~~fH~~CA~~~ 429 (691)
...|.+|+..| .-|.|. +|.++||..|..-.
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP 51 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCC
Confidence 46799999875 667786 79999999998643
No 194
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.79 E-value=4.9 Score=32.47 Aligned_cols=46 Identities=30% Similarity=0.513 Sum_probs=31.3
Q ss_pred ccccccCcCCCC---C-ceeccCccCcccceecccccccCccccccCCceEecccc
Q 038256 395 GSKLKCSRCGLK---G-AALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVH 446 (691)
Q Consensus 395 ~~~l~C~~C~~~---G-A~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H 446 (691)
...+.| +|++. | .-|+|. .|...||..|.--... .......||+.=
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~---~~~~~~~~C~~C 63 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGINNA---DALPSKFLCFRC 63 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCCTT---SCCCSCCCCHHH
T ss_pred CcceEe-eCCCccCCCCcEEECC--CCCCccCCeeeccCcc---ccCCCcEECCCc
Confidence 345778 69987 5 479998 5999999999975411 112345667643
No 195
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=58.14 E-value=2.1 Score=49.40 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeCC
Q 038256 598 KLFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLD 658 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~~ 658 (691)
..|.|.+|+|+|.+...++++++++|+..||+|..+-. .++.|+|+-..
T Consensus 596 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVS------------kkTd~lV~G~~ 644 (671)
T 2owo_A 596 SPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVS------------KKTDLVIAGEA 644 (671)
T ss_dssp -------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCccc------------CceeEEEECCC
Confidence 35999999999998877889999999999999988753 34557777643
No 196
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=57.28 E-value=2.2 Score=49.18 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=0.0
Q ss_pred CCCCceEEEecCcCcccHHHHHHHHHhCCCEEEecCchhhhhhcCCCCCCCceEEEEeCC
Q 038256 599 LFDGLSFYFSGNFMLGYKEDLQSLVITAGGTIWKSEGELLAQCRNDETAPSKVLVVYNLD 658 (691)
Q Consensus 599 LF~G~~f~l~g~~~~~~k~~L~~LI~~~GG~Vl~~~~~~~~~~~~~~~~~~~~~IV~~~~ 658 (691)
.|.|.+|+|+|.+.. ++++++++|+..||+|..+-. .++.|+|+-..
T Consensus 587 ~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVS------------kkTd~lV~G~~ 633 (667)
T 1dgs_A 587 LLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVS------------RKTSYLVVGEN 633 (667)
T ss_dssp ------------------------------------------------------------
T ss_pred ccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCccc------------CCeeEEEECCC
Confidence 599999999999887 889999999999999988753 34557776643
No 197
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.79 E-value=4.7 Score=35.27 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=31.5
Q ss_pred ccccCcCCCCCce---eccCccCcccceecccccccCccccccCCceEecccc
Q 038256 397 KLKCSRCGLKGAA---LGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVH 446 (691)
Q Consensus 397 ~l~C~~C~~~GA~---I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H 446 (691)
...|.+|+..|-- |.| ..|.++||..|.... .-. ......+|+.-
T Consensus 7 ~~~C~~C~~~g~~~~ll~C--~~C~~~~H~~Cl~~~-~~~--~~~~~W~C~~C 54 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFC--TTCGQHYHGMCLDIA-VTP--LKRAGWQCPEC 54 (111)
T ss_dssp CSCBTTTCCCCCTTTSEEC--SSSCCEECTTTTTCC-CCT--TTSTTCCCTTT
T ss_pred CCCCcCCCCCCCCcCCeEC--CCCCCCcChHHhCCc-ccc--ccccCccCCcC
Confidence 4679999999875 778 479999999998764 111 12344566554
No 198
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.58 E-value=5.1 Score=37.07 Aligned_cols=55 Identities=16% Similarity=0.456 Sum_probs=38.3
Q ss_pred CCeEEEcccccc-CCCcEEcCCcccCHHHHHHhccccccCcCCCCCceeccCccCcccceeccccccc
Q 038256 363 HVIHVHSKCIEW-APQVYYAGDTVKNLKAELARGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 363 ~~~wvH~~CalW-sp~v~~~~~~l~~l~~~~~r~~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~ 429 (691)
-.+|+-..|--+ ..+-+..+ ..+..-.|.+|+.-|--|.|. +|.++||+.|-...
T Consensus 38 l~v~~C~~C~~~y~~~~~~~d----------~Dg~~d~C~vC~~GG~LlcCD--~Cpr~Fh~~Cl~p~ 93 (142)
T 2lbm_A 38 LQVLICKNCFKYYMSDDISRD----------SDGMDEQCRWCAEGGNLICCD--FCHNAFCKKCILRN 93 (142)
T ss_dssp TTEEEEHHHHHHHHHSCCCBC----------TTSCBCSCSSSCCCSSEEECS--SSCCEEEHHHHHHH
T ss_pred ccccccHHHHHHHhcCCceec----------CCCCCCeecccCCCCcEEeCC--CCCCeeeHhhcCCC
Confidence 346777777752 22222211 244567899999999888775 79999999999754
No 199
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=55.57 E-value=5.8 Score=32.01 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=29.0
Q ss_pred ccCcCCCC---CceeccCccCcccceecccccccCccccccCCceEeccccC
Q 038256 399 KCSRCGLK---GAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 399 ~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
.|.+|++. |.-|.|. +|.+.||..|..-. --.. ......||+.-.
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~Pp-l~~~-P~g~~W~C~~C~ 67 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPP-LSSV-PSEDEWYCPECR 67 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSSC-CSSC-CSSSCCCCTTTS
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCCC-cCCC-CCCCCcCCcCcc
Confidence 57889974 6667786 79999999998632 0011 122266777644
No 200
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=55.56 E-value=4.7 Score=32.10 Aligned_cols=31 Identities=26% Similarity=0.576 Sum_probs=25.0
Q ss_pred cccCcCCCC-C---ceeccCccCcccceeccccccc
Q 038256 398 LKCSRCGLK-G---AALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 398 l~C~~C~~~-G---A~I~C~~~~C~~~fH~~CA~~~ 429 (691)
-.|.+|+++ + --|+|.. .|.+.||+.|.--.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt 43 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMT 43 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCC
T ss_pred CcCccCCCccCCCCCeEeccc-CccccCchhccCCC
Confidence 469999998 2 2589984 89999999998654
No 201
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.15 E-value=4.5 Score=32.96 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=31.0
Q ss_pred ccccCcCCCC---CceeccCccCcccceecccccccCccc--cccCCceEeccccCC
Q 038256 397 KLKCSRCGLK---GAALGCYVRSCRRSYHVPCALEISECR--WDTENFLVLCPVHSS 448 (691)
Q Consensus 397 ~l~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~~~g~~--~~~~~~~~~C~~H~~ 448 (691)
.+.| +|++. +--|+|. .|...||+.|.--...-. +.......||+.-..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3567 89998 4568997 599999999986531100 000234567775544
No 202
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.29 E-value=7.1 Score=32.16 Aligned_cols=28 Identities=36% Similarity=0.783 Sum_probs=22.8
Q ss_pred ccCcCCCC---CceeccCccCcccceecccccc
Q 038256 399 KCSRCGLK---GAALGCYVRSCRRSYHVPCALE 428 (691)
Q Consensus 399 ~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~ 428 (691)
.|.+|++. |.-|.|. .|.+.||..|..-
T Consensus 28 ~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNP 58 (77)
T ss_dssp SCSSSCCCCCSTTEEECS--SSCCEEETTSSSS
T ss_pred CCcCcCCcCCCCCEEEcC--CCCccccccccCC
Confidence 58999974 6667776 7999999999863
No 203
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.42 E-value=7.6 Score=32.74 Aligned_cols=49 Identities=18% Similarity=0.438 Sum_probs=34.1
Q ss_pred ccccCcCCCC-----CceeccCccCcccceecccccccCccc--cccCCceEeccccCC
Q 038256 397 KLKCSRCGLK-----GAALGCYVRSCRRSYHVPCALEISECR--WDTENFLVLCPVHSS 448 (691)
Q Consensus 397 ~l~C~~C~~~-----GA~I~C~~~~C~~~fH~~CA~~~~g~~--~~~~~~~~~C~~H~~ 448 (691)
...|.+|+.. +.-|-|. .|.+.||..|-.-. --. ........||+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Pp-l~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQ-VTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSC-CCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCc-ccccccCCCCCCeeCccccc
Confidence 5789999987 4567776 59999999998643 100 012456678988765
No 204
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=51.95 E-value=13 Score=40.64 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=31.1
Q ss_pred CCCCCceEEEecCcCc---ccHHHHHHHHHhCCCEEEecC
Q 038256 598 KLFDGLSFYFSGNFML---GYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~---~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
++|.|+.|+|+|.+.. +.+..|..+|+..||++....
T Consensus 351 ~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~v 390 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF 390 (442)
T ss_dssp TTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSS
T ss_pred cccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCC
Confidence 5899999999997633 245799999999999998875
No 205
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=51.41 E-value=3.8 Score=35.77 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=28.9
Q ss_pred CCCCCCceEEEecCcCc-ccHHHHHHHHHhCCCEEEecC
Q 038256 597 PKLFDGLSFYFSGNFML-GYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 597 ~~LF~G~~f~l~g~~~~-~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..+|+|+.|||...-.. +.++.+..+++..||+|+...
T Consensus 9 ~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~ 47 (106)
T 2jw5_A 9 EEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQ 47 (106)
T ss_dssp GGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTT
T ss_pred cCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeecc
Confidence 35899999999754333 344577779999999998765
No 206
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=50.90 E-value=8 Score=31.01 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=24.4
Q ss_pred ccccCcCCCC--C-ceeccCccCcccceeccccccc
Q 038256 397 KLKCSRCGLK--G-AALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 397 ~l~C~~C~~~--G-A~I~C~~~~C~~~fH~~CA~~~ 429 (691)
.+.| +|++. | .-|+|.. |...||..|..-.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNE--CHTWIHLSCAKIR 51 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTT--TCCEEETTTTTCC
T ss_pred ceEe-ECCCcCCCCCEEECCC--CCccccccccCcC
Confidence 4567 99998 3 4799984 9999999999764
No 207
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.14 E-value=9.3 Score=33.33 Aligned_cols=91 Identities=21% Similarity=0.327 Sum_probs=51.8
Q ss_pred CcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccccCCCcEEcCCcccCHHHHHHhccc-cccCcCC
Q 038256 326 NNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEWAPQVYYAGDTVKNLKAELARGSK-LKCSRCG 404 (691)
Q Consensus 326 ~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalWsp~v~~~~~~l~~l~~~~~r~~~-l~C~~C~ 404 (691)
+...|..|...++- ..|+.-. .=....|..|+--.... +....+.-.. ..|.+|+
T Consensus 6 ~~~~C~~C~~~g~~---~~ll~C~------------~C~~~~H~~Cl~~~~~~---------~~~~~W~C~~C~~C~~C~ 61 (111)
T 2ysm_A 6 SGANCAVCDSPGDL---LDQFFCT------------TCGQHYHGMCLDIAVTP---------LKRAGWQCPECKVCQNCK 61 (111)
T ss_dssp CCSCBTTTCCCCCT---TTSEECS------------SSCCEECTTTTTCCCCT---------TTSTTCCCTTTCCCTTTC
T ss_pred CCCCCcCCCCCCCC---cCCeECC------------CCCCCcChHHhCCcccc---------ccccCccCCcCCcccccC
Confidence 44679999877542 2334322 12356899998654211 1000111111 2588999
Q ss_pred CCCc---eeccCccCcccceecccccccCccccccCCceEeccc
Q 038256 405 LKGA---ALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPV 445 (691)
Q Consensus 405 ~~GA---~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~ 445 (691)
+.|- -|.|. .|.+.||..|..-. .........||+.
T Consensus 62 ~~~~~~~ll~Cd--~C~~~yH~~Cl~pp---l~~~P~g~W~C~~ 100 (111)
T 2ysm_A 62 QSGEDSKMLVCD--TCDKGYHTFCLQPV---MKSVPTNGWKCKN 100 (111)
T ss_dssp CCSCCTTEEECS--SSCCEEEGGGSSSC---CSSCCSSCCCCHH
T ss_pred ccCCCCCeeECC--CCCcHHhHHhcCCc---cccCCCCCcCCcC
Confidence 9875 68886 69999999999743 1111223567764
No 208
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=49.13 E-value=7.1 Score=35.50 Aligned_cols=34 Identities=24% Similarity=0.599 Sum_probs=28.0
Q ss_pred hccccccCcCCCCCceeccCccCcccceeccccccc
Q 038256 394 RGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 394 r~~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~ 429 (691)
.+....|.+|+..|--|-|. +|.++||..|-...
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd--~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCD--FCHNAFCKKCILRN 87 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECS--SSSCEEEHHHHHHH
T ss_pred CCCCCcCeecCCCCeeEecC--CCchhhhHHHhCCC
Confidence 34556799999988888775 79999999999853
No 209
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=46.99 E-value=8 Score=32.43 Aligned_cols=35 Identities=23% Similarity=0.513 Sum_probs=27.3
Q ss_pred ccccCcCCCCC--ceeccCccCcccceecccccccCcccc
Q 038256 397 KLKCSRCGLKG--AALGCYVRSCRRSYHVPCALEISECRW 434 (691)
Q Consensus 397 ~l~C~~C~~~G--A~I~C~~~~C~~~fH~~CA~~~~g~~~ 434 (691)
.-.|.+|+... .-+.|.. |.+.||..|-++. |..-
T Consensus 15 D~~C~VC~~~t~~~l~pCRv--C~RvfH~~CL~r~-gy~~ 51 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRV--CTRVFHDGCLRRM-GYIQ 51 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSS--SSSCCCHHHHHHH-TSCC
T ss_pred CcccCccccccccceecccc--ccccccHhhcccc-cccc
Confidence 45799999874 4467865 9999999999987 5543
No 210
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=44.71 E-value=5.9 Score=37.43 Aligned_cols=32 Identities=31% Similarity=0.630 Sum_probs=24.2
Q ss_pred hccccccCcCCCC----CceeccCccCcccceecccccc
Q 038256 394 RGSKLKCSRCGLK----GAALGCYVRSCRRSYHVPCALE 428 (691)
Q Consensus 394 r~~~l~C~~C~~~----GA~I~C~~~~C~~~fH~~CA~~ 428 (691)
......| +|++. |--|+|. .|..+||..|.--
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~ 40 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGI 40 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTC
T ss_pred CCCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCC
Confidence 3456778 99997 3468897 6999999999853
No 211
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.93 E-value=9.7 Score=31.25 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=33.0
Q ss_pred ccccCcCCCC----CceeccCccCcccceecccccccCccccccCCceEeccccCCCC
Q 038256 397 KLKCSRCGLK----GAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHSSVK 450 (691)
Q Consensus 397 ~l~C~~C~~~----GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~~~~ 450 (691)
.+.| +|++. |--|+|. .|...||..|.--... .. ......+|+.-....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~-~~-~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEE-NA-VDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHH-HH-TTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccc-cc-cCCCeEECCCccccc
Confidence 3556 89986 5568998 5999999999865311 11 123568898776643
No 212
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=39.75 E-value=14 Score=30.46 Aligned_cols=28 Identities=29% Similarity=0.732 Sum_probs=22.1
Q ss_pred ccCcCCCC---CceeccCccCcccceecccccc
Q 038256 399 KCSRCGLK---GAALGCYVRSCRRSYHVPCALE 428 (691)
Q Consensus 399 ~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~ 428 (691)
.|.+|++. +--|.|. .|.+.||+.|..-
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~P 58 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 58 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSS
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCC
Confidence 47888887 4457776 6999999999874
No 213
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=38.66 E-value=6.3 Score=32.65 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=31.8
Q ss_pred ccccccccccccccCceecCC----CCcccccccccccC-----CCCCCCCC
Q 038256 37 ALELKCPLCLNLFSRPLLLPC----DHIFCNSCIPRSAQ-----CESECPLC 79 (691)
Q Consensus 37 ~e~l~CpIC~e~~~~Pv~l~C----gHsFC~~Ci~~~~~-----~~~~CP~C 79 (691)
...|.|.+|.+.+.+--...| .|.||..|-....+ ....||.=
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 346889999999998644444 69999999887764 24567754
No 214
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=38.36 E-value=16 Score=33.37 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCCCCceEEEecCcCc-ccHHHHHHHHHhCCCEEEecC
Q 038256 598 KLFDGLSFYFSGNFML-GYKEDLQSLVITAGGTIWKSE 634 (691)
Q Consensus 598 ~LF~G~~f~l~g~~~~-~~k~~L~~LI~~~GG~Vl~~~ 634 (691)
..|.|+.+||.+.-.. ..++.|.+|++..|++|....
T Consensus 9 ~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~ 46 (133)
T 2dun_A 9 TRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDAC 46 (133)
T ss_dssp CSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSC
T ss_pred cccCccEEEEecCCcCHHHHHHHHHHHHhcCCEecccc
Confidence 4799999999965443 356899999999999999875
No 215
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=37.91 E-value=19 Score=26.92 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=23.3
Q ss_pred cccCcCCCC---CceeccCccCcccceeccccccc
Q 038256 398 LKCSRCGLK---GAALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 398 l~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~~ 429 (691)
..-.+|+++ |.-|+|.. |...||..|..-.
T Consensus 4 ~~~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi~ 36 (52)
T 3o7a_A 4 LVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIR 36 (52)
T ss_dssp CBCSTTCCBCTTCCEEECTT--TCCEEETTTTTCC
T ss_pred CeEEEeCCcCCCCCEEEcCC--CCccccccccCCC
Confidence 334478887 36799984 9999999999764
No 216
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.62 E-value=7.5 Score=27.02 Aligned_cols=14 Identities=21% Similarity=0.764 Sum_probs=8.6
Q ss_pred ccccccccccccCc
Q 038256 39 ELKCPLCLNLFSRP 52 (691)
Q Consensus 39 ~l~CpIC~e~~~~P 52 (691)
-+.||+|+..|..|
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 35666666666554
No 217
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.59 E-value=31 Score=30.09 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=21.3
Q ss_pred ccCceecCCCCcccccccccccCCCCCCCCCCCCc
Q 038256 49 FSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQC 83 (691)
Q Consensus 49 ~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~ 83 (691)
...|.-..||+.|+ ..+.....||.|+...
T Consensus 65 v~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred EECcChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 34566778999992 2334578899998755
No 218
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=29.06 E-value=22 Score=35.31 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=28.4
Q ss_pred ccccCcCCCC---CceeccCccCcccceecccccccCccccccCCceEeccccC
Q 038256 397 KLKCSRCGLK---GAALGCYVRSCRRSYHVPCALEISECRWDTENFLVLCPVHS 447 (691)
Q Consensus 397 ~l~C~~C~~~---GA~I~C~~~~C~~~fH~~CA~~~~g~~~~~~~~~~~C~~H~ 447 (691)
.-.|.+|+.. |--|.|. +|.+.||..|-.-. --... .....||+.-.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~PP-L~~vP-~G~~W~Cp~C~ 223 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPP-LSSVP-SEDEWYCPECR 223 (226)
T ss_dssp TTSCSSSCCCCC--CCEECS--SSCCEECSCC--CC-CCSCC-SSSCCCCGGGC
T ss_pred CCCCcCCCCCCCCCCeEEcC--CCCcceeCccCCCC-cccCC-CCCCCCCcCCc
Confidence 3469999985 5556775 69999999998632 11111 22266887654
No 219
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=27.89 E-value=26 Score=29.08 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=21.7
Q ss_pred cccccccccc-----CceecC-CCCcccccccccc
Q 038256 41 KCPLCLNLFS-----RPLLLP-CDHIFCNSCIPRS 69 (691)
Q Consensus 41 ~CpIC~e~~~-----~Pv~l~-CgHsFC~~Ci~~~ 69 (691)
-||-|...+. .++.-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998887653 235555 9999999999877
No 220
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.63 E-value=88 Score=25.50 Aligned_cols=57 Identities=16% Similarity=0.390 Sum_probs=32.7
Q ss_pred CCCCCcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEccccc-cCCCcEEcCCcccCHHHHHHhcccccc
Q 038256 322 DSCANNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIE-WAPQVYYAGDTVKNLKAELARGSKLKC 400 (691)
Q Consensus 322 ~~~~~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~Cal-Wsp~v~~~~~~l~~l~~~~~r~~~l~C 400 (691)
+...+...|..|....+. .++++.. -.-.+...|+|..|+. |. .......|
T Consensus 10 ~~~~~~~~C~IC~~~~~~--~~~l~~p---------C~C~Gs~h~fH~~Cl~~Wl-----------------~~~~~~~C 61 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDD--ESPLITP---------CHCTGSLHFVHQACLQQWI-----------------KSSDTRCC 61 (80)
T ss_dssp CCCTTSCCCSSSCCCCCS--SSCEECS---------SSCCSSSCCEETTHHHHHH-----------------HHHCCSBC
T ss_pred CCCCCCCCCeEcCccccC--CCeeEec---------cccCCcCCeeCHHHHHHHH-----------------hhCCCCCC
Confidence 334556789999865322 2233211 0123346899999974 42 22234689
Q ss_pred CcCCCC
Q 038256 401 SRCGLK 406 (691)
Q Consensus 401 ~~C~~~ 406 (691)
.+|+..
T Consensus 62 plCr~~ 67 (80)
T 2d8s_A 62 ELCKYE 67 (80)
T ss_dssp SSSCCB
T ss_pred CCCCCe
Confidence 999876
No 221
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.25 E-value=34 Score=28.02 Aligned_cols=37 Identities=27% Similarity=0.653 Sum_probs=26.1
Q ss_pred cccccc--cccccc-----Cceec------CCCCcccccccccccCCCCCCC
Q 038256 39 ELKCPL--CLNLFS-----RPLLL------PCDHIFCNSCIPRSAQCESECP 77 (691)
Q Consensus 39 ~l~CpI--C~e~~~-----~Pv~l------~CgHsFC~~Ci~~~~~~~~~CP 77 (691)
..-||- |...+. ..+.- .|++.||..|...|.. ..|.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Cccc
Confidence 456887 877653 23444 5899999999998865 5564
No 222
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.65 E-value=13 Score=30.98 Aligned_cols=41 Identities=24% Similarity=0.673 Sum_probs=28.0
Q ss_pred cccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCccc
Q 038256 40 LKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCTY 85 (691)
Q Consensus 40 l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~~ 85 (691)
+.||.|...+.. .=++.+|..|-..+.... .||.|..++..
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~~a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSLQA-LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEEEE-ECSSSCSCCCE
T ss_pred CCCCCCCCcccc----CCCceECccccccCCCcc-cCcchhhHHHH
Confidence 679999977652 112445888877665544 89999887743
No 223
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=26.16 E-value=49 Score=31.53 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=31.2
Q ss_pred cCCCCCc----eeccCccCcccceecccccccCcccccc-CCceEeccccCCC
Q 038256 402 RCGLKGA----ALGCYVRSCRRSYHVPCALEISECRWDT-ENFLVLCPVHSSV 449 (691)
Q Consensus 402 ~C~~~GA----~I~C~~~~C~~~fH~~CA~~~~g~~~~~-~~~~~~C~~H~~~ 449 (691)
+||..|- -++|+. |.+.||..|-.-..+....+ ..|.+.|..=.+.
T Consensus 9 YCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp --CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred EcCCCCCCCceeEeecc--ccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 7888743 489975 99999999997543333322 5788889877663
No 224
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.45 E-value=31 Score=27.70 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=24.3
Q ss_pred cccCcCCCC--CceeccCccCc-ccceeccccccc
Q 038256 398 LKCSRCGLK--GAALGCYVRSC-RRSYHVPCALEI 429 (691)
Q Consensus 398 l~C~~C~~~--GA~I~C~~~~C-~~~fH~~CA~~~ 429 (691)
+.| +|++. |-=|+|..-.| ...||+.|.--.
T Consensus 7 ~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~ 40 (70)
T 1x4i_A 7 GYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVGLT 40 (70)
T ss_dssp CCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHTCS
T ss_pred eEE-EcCCCCCCCEeEeCCCCCCccCCcccccccC
Confidence 456 48885 87789988778 489999999754
No 225
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.26 E-value=61 Score=26.03 Aligned_cols=33 Identities=18% Similarity=0.464 Sum_probs=22.0
Q ss_pred CcccccccccCcCCcccceeeeecCCCccccccccCCCCeEEEcccccc
Q 038256 326 NNYICGFCQSSRISEVTGLMLHYANGKPVVGEEADRSHVIHVHSKCIEW 374 (691)
Q Consensus 326 ~~~~C~lC~~~~~~~~~G~l~~~~~g~~v~g~~~~~~~~~wvH~~CalW 374 (691)
+...| +|+...+ .+.|+.... =..|.|..|+-.
T Consensus 15 ~~~~C-~C~~~~~---~~~MI~Cd~------------C~~WfH~~Cvgl 47 (76)
T 1wem_A 15 NALYC-ICRQPHN---NRFMICCDR------------CEEWFHGDCVGI 47 (76)
T ss_dssp TCCCS-TTCCCCC---SSCEEECSS------------SCCEEEHHHHSC
T ss_pred CCCEE-ECCCccC---CCCEEEeCC------------CCCcEeCeEEcc
Confidence 34667 7987643 356776532 248999999854
No 226
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.18 E-value=14 Score=31.70 Aligned_cols=40 Identities=28% Similarity=0.654 Sum_probs=28.1
Q ss_pred cccccccccccCceecCCCCcccccccccccCCCCCCCCCCCCcc
Q 038256 40 LKCPLCLNLFSRPLLLPCDHIFCNSCIPRSAQCESECPLCKSQCT 84 (691)
Q Consensus 40 l~CpIC~e~~~~Pv~l~CgHsFC~~Ci~~~~~~~~~CP~Cr~~~~ 84 (691)
..||+|...+.. .=++.+|..|-..+. ....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~-~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIE-MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEE-EEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhh-ccccCcchhhHHH
Confidence 789999987652 123445888876543 3567999988774
No 227
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=23.89 E-value=37 Score=32.52 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=24.1
Q ss_pred cccCcCCCC---Cc----eeccCccCcccceeccccccc
Q 038256 398 LKCSRCGLK---GA----ALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 398 l~C~~C~~~---GA----~I~C~~~~C~~~fH~~CA~~~ 429 (691)
..|.+|++. +- =|+|. .|...||..|..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~ 39 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLS 39 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCC
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccC
Confidence 469999997 32 58996 79999999998653
No 228
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=21.66 E-value=41 Score=33.39 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhhcCccEeecc
Q 038256 485 AKEWVFCGSALSVEEKLLLVRFGNMIGVPVSKFW 518 (691)
Q Consensus 485 ~~~~vi~~Sgls~~ek~~l~~~~~~lG~~v~~~~ 518 (691)
..++|+.+|||++++.+.|.++++..++.+..+|
T Consensus 77 g~~~ViGTTG~~~~~~~~l~~~a~~~~vv~apNf 110 (228)
T 1vm6_A 77 RAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNF 110 (228)
T ss_dssp TCEEEECCCSCCHHHHHHHHHHTTTSEEEECSCC
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHhhCCEEEeccc
Confidence 4678999999999999898887655444444333
No 229
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.13 E-value=40 Score=31.61 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=31.9
Q ss_pred hccccccCcCCCCCceeccCccCcccceeccccccc
Q 038256 394 RGSKLKCSRCGLKGAALGCYVRSCRRSYHVPCALEI 429 (691)
Q Consensus 394 r~~~l~C~~C~~~GA~I~C~~~~C~~~fH~~CA~~~ 429 (691)
.+....|.+|+.-|.-|.|.+.+|.+.|=+.|-...
T Consensus 76 DG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~n 111 (159)
T 3a1b_A 76 DGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLL 111 (159)
T ss_dssp TSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHH
T ss_pred CCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHh
Confidence 345678999999999999999999999999999774
No 230
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.80 E-value=31 Score=28.04 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=22.9
Q ss_pred cccCcCCCC-CceeccCccCcccceecccccc
Q 038256 398 LKCSRCGLK-GAALGCYVRSCRRSYHVPCALE 428 (691)
Q Consensus 398 l~C~~C~~~-GA~I~C~~~~C~~~fH~~CA~~ 428 (691)
..|.+|... -..+.|. .|...||..|..+
T Consensus 16 ~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp CBCSSSCCBCSSSEECS--SSCCEECHHHHHH
T ss_pred CcCcchhhHcccCCccC--CCCchhhHHHHHH
Confidence 458888877 3346776 8999999999975
Done!