BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038258
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALME--SKQ 324
EN VVIY+ T C +V+++ + VQ L ++ +L+ ++E + Q
Sbjct: 18 ENTVVIYSKTW------CSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQ 71
Query: 325 VKVPLVFVKGRLIGGVDEVMKLEEEGKLEILF 356
VP VFV G+ IGG + +KL +G LE++
Sbjct: 72 HTVPNVFVCGKHIGGCTDTVKLNRKGDLELML 103
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 264 PGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESK 323
PG V+IYT R C + ++++ + E +D+ ELRA M+ +
Sbjct: 2 PGSMVDVIIYT------RPGCPYCARAKALLARKGAEFNE----IDASATPELRAEMQER 51
Query: 324 QVK--VPLVFVKGRLIGGVDEVMKLEEEGKLEILF 356
+ P +F+ +GG D++ LE+EGKL+ L
Sbjct: 52 SGRNTFPQIFIGSVHVGGCDDLYALEDEGKLDSLL 86
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPL 329
V IYT ++T C++ ++++ S V E I ++ +EE+ + S + VP
Sbjct: 3 VEIYT------KETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEM--IKRSGRTTVPQ 54
Query: 330 VFVKGRLIGGVDEVMKLEEEGKLEILF 356
+F+ + IGG D++ L+ G L+ L
Sbjct: 55 IFIDAQHIGGYDDLYALDARGGLDPLL 81
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 36.2 bits (82), Expect = 0.030, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 293 IIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEEEGKL 352
I+ H +Q DI D ++ L+A S P ++V G LIGG+D + +LE +L
Sbjct: 40 ILHKHNIQFSSFDIFSDEEVRQGLKAY--SSWPTYPQLYVSGELIGGLDIIKELEASEEL 97
Query: 353 EILFDRIPKAA 363
+ + PKAA
Sbjct: 98 DTI---CPKAA 105
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 267 ENAVVIYTTT----LRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMES 322
+N VVI++ T +K F D N ++E + LE + F++ L +
Sbjct: 26 DNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVE---LDLLE----YGNQFQDALYKMTGE 78
Query: 323 KQVKVPLVFVKGRLIGGVDEVMKLEEEGKL 352
+ VP +FV G IGG + +L +EGKL
Sbjct: 79 R--TVPRIFVNGTFIGGATDTHRLHKEGKL 106
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 264 PGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESK 323
PG +++YT R C + R +++ V+ DI + ++E+ +
Sbjct: 2 PGSMKEIILYT------RPNCPYCKRARDLLDKKGVKY--TDIDASTSLRQEMVQRANGR 53
Query: 324 QVKVPLVFVKGRLIGGVDEVMKLEEEGKLEILFDRI 359
P +F+ +GG D++ LE +GKL+ L +
Sbjct: 54 NT-FPQIFIGDYHVGGCDDLYALENKGKLDSLLQDV 88
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 267 ENAVVIYTTT----LRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMES 322
+N VVI++ T +K F D N ++E + LE + F++ L + +
Sbjct: 48 DNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVE---LDLLE----YGNQFQDALYKM--T 98
Query: 323 KQVKVPLVFVKGRLIGGVDEVMKLEEEGKL 352
+ VP +FV G IGG + +L +EGKL
Sbjct: 99 GERTVPRIFVNGTFIGGATDTHRLHKEGKL 128
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 267 ENAVVIYTTT----LRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMES 322
+N VVI++ T +K F D N ++E + LE + F++ L +
Sbjct: 34 DNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVE---LDLLE----YGNQFQDALYKMTGE 86
Query: 323 KQVKVPLVFVKGRLIGGVDEVMKLEEEGKL 352
+ VP +FV G IGG + +L +EGKL
Sbjct: 87 R--TVPRIFVNGTFIGGATDTHRLHKEGKL 114
>pdb|1SJ6|A Chain A, Nmr Structure And Regulated Expression In Apl Cell Of
Human Sh3bgrl3
Length = 101
Score = 34.7 bits (78), Expect = 0.082, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 272 IYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVF 331
+Y+T++ G R+ ++V I++ ++Q DIS D+ ++E+RAL + + P +
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKATPPQIV 65
Query: 332 VKGRLIGGVDEVMKLEEEGKLE 353
+ G + ++ E+ L+
Sbjct: 66 NGDQYCGDYELFVEAVEQNTLQ 87
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALME--SK 323
EN VV+Y+ T ++V+S+ + V L ++ +++ ++E +
Sbjct: 16 AENPVVVYSKTWCSYS------SEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTG 69
Query: 324 QVKVPLVFVKGRLIGGVDEVMKLEEEGKLEILF 356
Q VP VF+ G+ IGG + +KL +G+LE L
Sbjct: 70 QHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 102
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 289 KVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348
++ I+ S V+ DI D ++ L+A S P ++VKG L+GG+D V +L+E
Sbjct: 37 QILEILNSTGVEYETFDILEDEEVRQGLKAY--SNWPTYPQLYVKGELVGGLDIVKELKE 94
Query: 349 EGKL 352
G+L
Sbjct: 95 NGEL 98
>pdb|1J0F|A Chain A, Solution Structure Of The Sh3 Domain Binding Glutamic
Acid- Rich Protein Like 3
Length = 100
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 272 IYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVF 331
+Y+T++ G R+ ++V I++ ++Q DIS D+ ++E+R L + + P +
Sbjct: 13 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV 72
Query: 332 VKGRLIGGVDEVMKLEEEGKLE 353
G + ++ E+ L+
Sbjct: 73 NGNHYCGDYELFVEAVEQDTLQ 94
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 283 TFEDC---NKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGG 339
T E C ++ ++++ S V E I ++ +EE+ + S + VP +F+ + IGG
Sbjct: 7 TKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEM--IKRSGRTTVPQIFIDAQHIGG 64
Query: 340 VDEVMKLEEEGKLEILF 356
D++ L+ G L+ L
Sbjct: 65 YDDLYALDARGGLDPLL 81
>pdb|1T1V|A Chain A, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
pdb|1T1V|B Chain B, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
Length = 93
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 272 IYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVF 331
+Y+T++ G R+ ++V I++ ++Q DIS D+ ++E+R L + + P +
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV 65
Query: 332 VKGRLIGGVDEVMKLEEEGKLE 353
G + ++ E+ L+
Sbjct: 66 NGNHYCGDYELFVEAVEQDTLQ 87
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 289 KVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348
++ I+ S V+ DI D ++ L+ S P ++V+G L+GG+D V +L++
Sbjct: 35 QILEILNSTGVEYETFDILEDEEVRQGLKTF--SNWPTYPQLYVRGDLVGGLDIVKELKD 92
Query: 349 EGKL 352
G+L
Sbjct: 93 NGEL 96
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQ--TLERD-ISMDSGFKEELRALMESKQV 325
AV++++ T T C KV+ ++ +++ T+E D +S S ++ L + SK
Sbjct: 19 AVILFSKT------TCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF--SKIE 70
Query: 326 KVPLVFVKGRLIGGVDEVMKLEEEGKL 352
VP +FV+G+ IG V+K +L
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQ--TLERD-ISMDSGFKEELRALMESKQV 325
AV++++ T T C KV+ ++ +++ T+E D +S S ++ L + SK
Sbjct: 19 AVILFSKT------TCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF--SKIE 70
Query: 326 KVPLVFVKGRLIGGVDEVMKLEEEGKL 352
VP +FV+G+ IG V+K +L
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQ--TLERD-ISMDSGFKEELRALMESKQV 325
AV++++ T T C KV+ ++ +++ T+E D +S S ++ L + SK
Sbjct: 19 AVILFSKT------TCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF--SKIE 70
Query: 326 KVPLVFVKGRLIGGVDEVMKLEEEGKL 352
VP +FV+G+ IG V+K +L
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|3TIP|A Chain A, Crystal Structure Of Staphylococcus Aureus Sasg E-G52
Module
Length = 132
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 192 PVKNESLDCDSEVSLRRRSFSPLFDPDLIANYERELSEGEEQIKRIISPTFSN 244
PVK +S+ E+ + F+PDL E+ EG++ K I +PT N
Sbjct: 52 PVKGDSIVEKEEIPFEKER---KFNPDLAPGTEKVTREGQKGEKTITTPTLKN 101
>pdb|3TIQ|A Chain A, Crystal Structure Of Staphylococcus Aureus Sasg G51-E-G52
Module
pdb|3TIQ|B Chain B, Crystal Structure Of Staphylococcus Aureus Sasg G51-E-G52
Module
Length = 214
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 192 PVKNESLDCDSEVSLRRRSFSPLFDPDLIANYERELSEGEEQIKRIISPTFSN 244
PVK +S+ E+ + F+PDL E+ EG++ K I +PT N
Sbjct: 134 PVKGDSIVEKEEIPFEKER---KFNPDLAPGTEKVTREGQKGEKTITTPTLKN 183
>pdb|2KCN|A Chain A, Solution Structure Of The Antifungal Protein Paf From
Penicillium Chrysogenum
Length = 55
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 148 KFGGKENKVRVNGPVKSDFSPKSVLKVKNFQDSSCKKALNLNIVPVKNESLDCD 201
K+ GK K + K+D + +K F + C K N V N ++DCD
Sbjct: 2 KYTGKCTKSKNECKYKNDAGKDTFIKCPKFDNKKCTKDNNKCTVDTYNNAVDCD 55
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 8 KHVKRELRRDILLNHGDGGEE--YVVNHVVSLTSSTYG 43
K+ +R L DI ++HGDG EE Y + V++++ YG
Sbjct: 159 KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYG 196
>pdb|2ETW|A Chain A, Principles Of Protein-Dna Recognition Revealed In The
Structural Analysis Of Ndt80-Mse Dna Complexes
pdb|2EUV|A Chain A, Principles Of Protein-Dna Recognition Revealed In The
Structural Analysis Of Ndt80-Mse Dna Complexes
pdb|2EUW|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma4t)
pdb|2EUX|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Variant Va4g)
pdb|2EUZ|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Mc5t)
pdb|2EVF|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma6t)
pdb|2EVG|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma7t)
pdb|2EVH|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma7g)
pdb|2EVI|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma8t)
pdb|2EVJ|A Chain A, Structure Of An Ndt80-Dna Complex (Mse Mutant Ma9c)
Length = 345
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 213 PLFDPDLIANYERELSEGEEQIKRIISPTFSNRNCKSSSESLLNVYDKKCPPGGENAVVI 272
P+ DL++ YERELS +E+ +I + S N +DK+ + +
Sbjct: 14 PVLQDDLVSKYERELSTEQEEDTPVILTQLNEDGTTS------NYFDKR-----KLKIAP 62
Query: 273 YTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDI--SMDSGF 312
+T + FE ++ESH +TL+ I +D GF
Sbjct: 63 RSTLQFKVGPPFELVRDYCPVVESHTGRTLDLRIIPRIDRGF 104
>pdb|1MNN|A Chain A, Structure Of The Sporulation Specific Transcription Factor
Ndt80 Bound To Dna
Length = 340
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 213 PLFDPDLIANYERELSEGEEQIKRIISPTFSNRNCKSSSESLLNVYDKKCPPGGENAVVI 272
P+ DL++ YERELS +E+ +I + S N +DK+ + +
Sbjct: 9 PVLQDDLVSKYERELSTEQEEDTPVILTQLNEDGTTS------NYFDKR-----KLKIAP 57
Query: 273 YTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDI--SMDSGF 312
+T + FE ++ESH +TL+ I +D GF
Sbjct: 58 RSTLQFKVGPPFELVRDYCPVVESHTGRTLDLRIIPRIDRGF 99
>pdb|1P99|A Chain A, 1.7a Crystal Structure Of Protein Pg110 From
Staphylococcus Aureus
Length = 295
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 93 AWELMEGL--EEEVQVPISNLTKKSPKARVLLRGFADMDARSPLKFLNQFGSPRKAKKFG 150
AWE ++ L ++++ V I + + + + L G DM+A FL+Q+ K K
Sbjct: 52 AWEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKIS 111
Query: 151 G 151
Sbjct: 112 A 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,018,434
Number of Sequences: 62578
Number of extensions: 387997
Number of successful extensions: 826
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 49
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)