Query 038258
Match_columns 366
No_of_seqs 161 out of 1166
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 5E-38 1.1E-42 300.2 14.8 108 254-361 117-226 (281)
2 cd03031 GRX_GRX_like Glutaredo 99.9 1.6E-25 3.5E-30 198.0 12.7 96 269-364 1-98 (147)
3 PRK10824 glutaredoxin-4; Provi 99.9 5.1E-22 1.1E-26 169.6 11.5 100 256-361 6-105 (115)
4 cd03030 GRX_SH3BGR Glutaredoxi 99.9 9.4E-22 2E-26 161.7 9.7 89 269-357 1-91 (92)
5 PHA03050 glutaredoxin; Provisi 99.9 2E-21 4.3E-26 163.2 11.8 96 257-363 5-106 (108)
6 TIGR02189 GlrX-like_plant Glut 99.9 1.6E-21 3.4E-26 160.7 10.5 89 265-361 5-96 (99)
7 TIGR00365 monothiol glutaredox 99.9 5.7E-21 1.2E-25 156.9 11.6 89 265-356 9-97 (97)
8 cd03028 GRX_PICOT_like Glutare 99.8 3.6E-20 7.7E-25 149.3 10.7 86 265-353 5-90 (90)
9 PRK10638 glutaredoxin 3; Provi 99.8 1.7E-19 3.6E-24 142.2 11.3 83 267-357 1-83 (83)
10 TIGR02181 GRX_bact Glutaredoxi 99.8 1.6E-19 3.5E-24 139.9 9.9 79 270-356 1-79 (79)
11 KOG1752 Glutaredoxin and relat 99.8 1E-18 2.2E-23 147.2 10.8 89 265-361 11-102 (104)
12 PTZ00062 glutaredoxin; Provisi 99.8 4.6E-18 9.9E-23 157.6 12.2 99 254-358 102-200 (204)
13 cd03418 GRX_GRXb_1_3_like Glut 99.7 1E-17 2.2E-22 127.5 10.7 75 269-350 1-75 (75)
14 cd03027 GRX_DEP Glutaredoxin ( 99.7 1.5E-17 3.3E-22 127.8 9.4 73 268-348 1-73 (73)
15 TIGR02180 GRX_euk Glutaredoxin 99.7 6.3E-17 1.4E-21 124.5 9.5 79 270-356 1-84 (84)
16 COG0695 GrxC Glutaredoxin and 99.7 4.4E-17 9.6E-22 129.9 8.7 76 269-352 2-79 (80)
17 COG0278 Glutaredoxin-related p 99.7 1.2E-16 2.5E-21 134.4 10.4 99 255-359 5-104 (105)
18 cd03419 GRX_GRXh_1_2_like Glut 99.7 2.4E-16 5.2E-21 121.3 9.1 79 269-355 1-82 (82)
19 cd03029 GRX_hybridPRX5 Glutare 99.7 3.3E-16 7.2E-21 119.8 9.3 70 269-347 2-71 (72)
20 cd02066 GRX_family Glutaredoxi 99.7 1.1E-15 2.4E-20 112.1 10.0 72 269-348 1-72 (72)
21 PRK11200 grxA glutaredoxin 1; 99.6 9.5E-16 2.1E-20 121.2 10.3 75 269-349 2-81 (85)
22 TIGR02190 GlrX-dom Glutaredoxi 99.6 1E-15 2.2E-20 120.1 10.0 73 266-347 6-78 (79)
23 TIGR02183 GRXA Glutaredoxin, G 99.6 1.2E-15 2.5E-20 122.1 10.0 75 270-350 2-81 (86)
24 KOG0911 Glutaredoxin-related p 99.6 2.5E-14 5.4E-19 134.6 13.5 137 216-359 91-227 (227)
25 PF00462 Glutaredoxin: Glutare 99.6 1.7E-14 3.8E-19 106.9 8.4 60 270-337 1-60 (60)
26 PRK12759 bifunctional gluaredo 99.5 2.1E-14 4.6E-19 144.5 11.0 84 267-360 1-92 (410)
27 PF04908 SH3BGR: SH3-binding, 99.5 4.5E-14 9.7E-19 118.2 8.5 89 269-357 2-97 (99)
28 PRK10329 glutaredoxin-like pro 99.4 2.3E-12 5.1E-17 102.9 10.1 64 269-341 2-65 (81)
29 TIGR02194 GlrX_NrdH Glutaredox 99.4 1E-12 2.3E-17 101.0 7.8 64 270-342 1-65 (72)
30 TIGR02196 GlrX_YruB Glutaredox 99.2 2.6E-10 5.7E-15 84.1 9.6 66 269-342 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.1 6.4E-10 1.4E-14 82.1 9.0 66 269-342 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 98.9 1.7E-08 3.6E-13 76.2 9.6 64 269-340 1-66 (77)
33 cd02973 TRX_GRX_like Thioredox 98.7 4.2E-08 9.2E-13 73.4 6.4 58 269-338 2-64 (67)
34 cd03041 GST_N_2GST_N GST_N fam 98.6 3.3E-07 7.2E-12 71.1 9.4 71 270-348 2-74 (77)
35 cd03040 GST_N_mPGES2 GST_N fam 98.5 1E-06 2.2E-11 67.5 9.4 69 269-348 1-73 (77)
36 cd00570 GST_N_family Glutathio 98.5 5E-07 1.1E-11 64.6 6.5 68 271-346 2-69 (71)
37 cd03037 GST_N_GRX2 GST_N famil 98.4 1.5E-06 3.2E-11 65.8 8.2 68 271-348 2-70 (71)
38 cd03055 GST_N_Omega GST_N fami 98.2 5.1E-06 1.1E-10 66.4 8.2 75 264-347 13-88 (89)
39 cd03059 GST_N_SspA GST_N famil 98.2 8.4E-06 1.8E-10 61.3 7.7 70 270-348 1-70 (73)
40 KOG4023 Uncharacterized conser 98.1 7.8E-06 1.7E-10 69.5 6.2 91 269-361 3-101 (108)
41 cd03036 ArsC_like Arsenate Red 98.1 4.5E-06 9.7E-11 70.1 4.8 46 270-321 1-46 (111)
42 cd02977 ArsC_family Arsenate R 98.0 5.1E-06 1.1E-10 68.4 4.5 47 270-322 1-47 (105)
43 cd03060 GST_N_Omega_like GST_N 98.0 2.1E-05 4.5E-10 59.8 7.3 66 271-345 2-68 (71)
44 cd03051 GST_N_GTT2_like GST_N 98.0 1.5E-05 3.3E-10 59.4 6.1 69 270-346 1-72 (74)
45 PF13417 GST_N_3: Glutathione 98.0 2.4E-05 5.3E-10 60.3 7.4 69 272-349 1-69 (75)
46 TIGR00411 redox_disulf_1 small 98.0 3.9E-05 8.4E-10 58.6 8.1 55 269-335 2-62 (82)
47 PF05768 DUF836: Glutaredoxin- 98.0 6.4E-05 1.4E-09 59.7 9.4 53 269-334 1-57 (81)
48 cd03045 GST_N_Delta_Epsilon GS 98.0 3.4E-05 7.4E-10 58.2 7.1 69 270-346 1-71 (74)
49 PRK01655 spxA transcriptional 97.9 2.1E-05 4.5E-10 68.3 6.2 44 270-319 2-45 (131)
50 cd03056 GST_N_4 GST_N family, 97.9 7E-05 1.5E-09 55.9 7.3 68 270-345 1-70 (73)
51 TIGR01617 arsC_related transcr 97.8 4.3E-05 9.3E-10 64.5 6.1 45 270-320 1-45 (117)
52 cd03032 ArsC_Spx Arsenate Redu 97.8 5.8E-05 1.3E-09 63.6 6.3 45 270-320 2-46 (115)
53 cd03026 AhpF_NTD_C TRX-GRX-lik 97.7 0.00015 3.4E-09 58.9 7.2 61 266-338 12-77 (89)
54 cd03054 GST_N_Metaxin GST_N fa 97.7 0.00032 6.9E-09 53.3 8.5 60 279-348 11-70 (72)
55 PRK13344 spxA transcriptional 97.6 8.7E-05 1.9E-09 64.7 5.5 43 270-318 2-44 (132)
56 PRK12559 transcriptional regul 97.6 9.9E-05 2.1E-09 64.3 5.6 44 270-319 2-45 (131)
57 cd03061 GST_N_CLIC GST_N famil 97.6 0.00062 1.3E-08 56.4 9.6 79 268-349 4-84 (91)
58 KOG3029 Glutathione S-transfer 97.6 0.00023 4.9E-09 70.5 7.9 84 268-362 89-178 (370)
59 PHA02125 thioredoxin-like prot 97.5 0.00033 7.2E-09 54.4 7.0 55 270-337 2-56 (75)
60 cd03035 ArsC_Yffb Arsenate Red 97.5 0.00013 2.7E-09 61.3 4.9 45 270-320 1-45 (105)
61 cd03053 GST_N_Phi GST_N family 97.5 0.00071 1.5E-08 51.4 7.9 71 270-348 2-74 (76)
62 cd03058 GST_N_Tau GST_N family 97.4 0.00071 1.5E-08 51.5 7.6 71 270-348 1-71 (74)
63 cd03033 ArsC_15kD Arsenate Red 97.4 0.00021 4.6E-09 60.8 5.1 45 269-319 1-45 (113)
64 TIGR00412 redox_disulf_2 small 97.4 0.00053 1.1E-08 53.7 6.7 54 270-337 3-60 (76)
65 cd03052 GST_N_GDAP1 GST_N fami 97.3 0.00074 1.6E-08 52.4 6.6 69 270-346 1-71 (73)
66 cd03076 GST_N_Pi GST_N family, 97.2 0.002 4.4E-08 49.4 8.0 70 270-348 2-71 (73)
67 cd03042 GST_N_Zeta GST_N famil 97.2 0.0012 2.7E-08 49.3 6.4 68 271-346 2-71 (73)
68 cd03039 GST_N_Sigma_like GST_N 97.2 0.0019 4.1E-08 48.9 7.3 68 271-346 2-69 (72)
69 cd03049 GST_N_3 GST_N family, 97.1 0.0014 3.1E-08 49.6 6.3 67 271-346 2-71 (73)
70 PF13192 Thioredoxin_3: Thiore 97.1 0.0035 7.7E-08 48.9 8.1 47 283-336 9-59 (76)
71 PRK10387 glutaredoxin 2; Provi 97.0 0.0029 6.2E-08 56.5 8.1 70 270-349 1-71 (210)
72 cd03080 GST_N_Metaxin_like GST 97.0 0.0055 1.2E-07 47.1 8.4 69 270-348 2-71 (75)
73 TIGR02182 GRXB Glutaredoxin, G 97.0 0.0026 5.6E-08 58.1 7.6 68 272-349 2-70 (209)
74 cd02975 PfPDO_like_N Pyrococcu 97.0 0.0032 7E-08 52.7 7.4 55 266-332 21-81 (113)
75 cd03048 GST_N_Ure2p_like GST_N 96.9 0.0042 9.2E-08 48.0 7.5 70 270-348 2-76 (81)
76 cd03038 GST_N_etherase_LigE GS 96.9 0.0033 7.2E-08 49.2 6.3 66 280-348 12-80 (84)
77 PRK10026 arsenate reductase; P 96.8 0.0022 4.7E-08 57.2 5.4 47 267-319 1-47 (141)
78 COG1393 ArsC Arsenate reductas 96.8 0.002 4.4E-08 55.5 5.0 46 269-320 2-47 (117)
79 cd02949 TRX_NTR TRX domain, no 96.8 0.0072 1.6E-07 48.4 7.8 61 266-338 13-81 (97)
80 cd03034 ArsC_ArsC Arsenate Red 96.8 0.0023 5.1E-08 53.9 5.0 42 270-317 1-42 (112)
81 TIGR00014 arsC arsenate reduct 96.7 0.0025 5.4E-08 54.0 5.0 45 270-320 1-45 (114)
82 cd01659 TRX_superfamily Thiore 96.7 0.0069 1.5E-07 40.6 6.0 56 270-334 1-61 (69)
83 cd03043 GST_N_1 GST_N family, 96.6 0.009 2E-07 46.0 7.1 67 278-346 4-71 (73)
84 cd02947 TRX_family TRX family; 96.6 0.013 2.8E-07 43.6 7.7 58 269-338 13-77 (93)
85 TIGR01616 nitro_assoc nitrogen 96.6 0.0037 8.1E-08 54.4 5.3 36 269-310 2-37 (126)
86 COG4545 Glutaredoxin-related p 96.6 0.0071 1.5E-07 49.7 6.4 67 271-344 5-82 (85)
87 cd03050 GST_N_Theta GST_N fami 96.6 0.013 2.7E-07 44.8 7.6 69 271-347 2-72 (76)
88 PRK10853 putative reductase; P 96.6 0.0034 7.4E-08 53.9 4.8 45 270-320 2-46 (118)
89 TIGR00862 O-ClC intracellular 96.5 0.015 3.2E-07 55.5 9.2 78 269-349 2-81 (236)
90 PRK09481 sspA stringent starva 96.5 0.011 2.3E-07 53.7 7.8 71 267-346 8-78 (211)
91 TIGR01295 PedC_BrcD bacterioci 96.5 0.02 4.3E-07 49.0 8.8 68 267-340 24-106 (122)
92 PF13409 GST_N_2: Glutathione 96.5 0.0048 1E-07 47.3 4.6 64 284-349 2-69 (70)
93 TIGR03140 AhpF alkyl hydropero 96.5 0.0079 1.7E-07 62.3 7.5 71 253-338 107-182 (515)
94 TIGR02187 GlrX_arch Glutaredox 96.4 0.012 2.6E-07 54.2 7.7 70 256-340 126-203 (215)
95 PRK15317 alkyl hydroperoxide r 96.3 0.01 2.2E-07 61.5 7.4 71 253-338 106-181 (517)
96 cd03044 GST_N_EF1Bgamma GST_N 96.3 0.016 3.6E-07 44.4 6.7 69 271-347 2-72 (75)
97 cd02953 DsbDgamma DsbD gamma f 96.2 0.017 3.8E-07 46.4 6.7 59 266-332 11-78 (104)
98 cd03057 GST_N_Beta GST_N famil 96.1 0.023 4.9E-07 43.4 6.7 68 271-347 2-72 (77)
99 cd03046 GST_N_GTT1_like GST_N 96.0 0.028 6E-07 42.4 6.7 69 271-348 2-72 (76)
100 cd03047 GST_N_2 GST_N family, 95.9 0.043 9.4E-07 41.6 7.2 67 271-345 2-70 (73)
101 TIGR03143 AhpF_homolog putativ 95.8 0.023 5.1E-07 59.5 7.5 59 266-336 476-539 (555)
102 PHA02278 thioredoxin-like prot 95.7 0.06 1.3E-06 45.0 7.9 65 266-338 14-86 (103)
103 PF03960 ArsC: ArsC family; I 95.5 0.032 6.8E-07 46.5 5.7 37 283-319 5-41 (110)
104 PTZ00051 thioredoxin; Provisio 95.5 0.076 1.7E-06 41.8 7.5 59 268-338 20-85 (98)
105 cd02954 DIM1 Dim1 family; Dim1 95.4 0.057 1.2E-06 46.6 6.9 58 269-338 17-82 (114)
106 PRK15113 glutathione S-transfe 95.3 0.08 1.7E-06 48.1 8.2 73 268-346 4-78 (214)
107 cd02957 Phd_like Phosducin (Ph 95.1 0.071 1.5E-06 44.1 6.4 65 268-345 26-97 (113)
108 PRK09381 trxA thioredoxin; Pro 95.0 0.099 2.1E-06 42.3 7.0 61 266-338 21-89 (109)
109 cd02989 Phd_like_TxnDC9 Phosdu 95.0 0.13 2.8E-06 43.2 7.7 61 268-340 24-91 (113)
110 PF13098 Thioredoxin_2: Thiore 95.0 0.11 2.3E-06 41.9 7.0 73 266-346 5-108 (112)
111 TIGR01068 thioredoxin thioredo 95.0 0.21 4.5E-06 38.6 8.4 58 268-337 16-81 (101)
112 PF00085 Thioredoxin: Thioredo 94.9 0.15 3.4E-06 39.6 7.7 60 267-338 18-85 (103)
113 PLN02378 glutathione S-transfe 94.9 0.084 1.8E-06 48.3 6.8 64 282-348 18-81 (213)
114 PLN02817 glutathione dehydroge 94.8 0.087 1.9E-06 50.8 7.1 63 283-348 72-134 (265)
115 TIGR02187 GlrX_arch Glutaredox 94.6 0.15 3.1E-06 47.1 7.8 62 266-337 19-90 (215)
116 cd03004 PDI_a_ERdj5_C PDIa fam 94.6 0.19 4.1E-06 40.2 7.4 55 268-334 21-83 (104)
117 cd02984 TRX_PICOT TRX domain, 94.6 0.2 4.3E-06 39.2 7.4 59 267-337 15-81 (97)
118 PLN02473 glutathione S-transfe 94.5 0.14 3.1E-06 46.0 7.4 70 270-347 3-74 (214)
119 cd02985 TRX_CDSP32 TRX family, 94.4 0.26 5.6E-06 40.2 8.1 63 266-337 15-84 (103)
120 PRK10877 protein disulfide iso 94.4 0.21 4.7E-06 47.3 8.7 35 264-304 105-142 (232)
121 cd02951 SoxW SoxW family; SoxW 94.4 0.17 3.7E-06 42.0 7.1 59 267-333 15-92 (125)
122 KOG0910 Thioredoxin-like prote 94.4 0.052 1.1E-06 49.3 4.2 70 256-337 51-128 (150)
123 TIGR01262 maiA maleylacetoacet 94.3 0.091 2E-06 46.9 5.6 64 283-348 7-73 (210)
124 TIGR01126 pdi_dom protein disu 94.0 0.19 4E-06 39.2 6.3 55 266-332 13-75 (102)
125 cd02948 TRX_NDPK TRX domain, T 94.0 0.4 8.6E-06 38.9 8.3 58 266-336 17-83 (102)
126 cd02956 ybbN ybbN protein fami 94.0 0.21 4.6E-06 39.2 6.5 58 268-337 14-79 (96)
127 KOG0406 Glutathione S-transfer 93.7 0.37 7.9E-06 46.6 8.7 73 268-348 8-80 (231)
128 cd02950 TxlA TRX-like protein 93.2 0.51 1.1E-05 41.2 8.2 62 266-337 20-90 (142)
129 KOG1422 Intracellular Cl- chan 93.1 0.24 5.1E-06 47.5 6.3 62 283-349 20-83 (221)
130 cd03077 GST_N_Alpha GST_N fami 93.1 0.82 1.8E-05 35.7 8.4 70 270-346 2-71 (79)
131 cd02965 HyaE HyaE family; HyaE 93.1 0.41 8.8E-06 41.3 7.2 65 266-340 27-99 (111)
132 cd02961 PDI_a_family Protein D 92.8 0.39 8.5E-06 36.5 6.2 53 268-332 17-77 (101)
133 cd02987 Phd_like_Phd Phosducin 92.8 0.36 7.9E-06 43.8 6.9 58 270-340 87-151 (175)
134 PRK10996 thioredoxin 2; Provis 92.7 0.53 1.2E-05 40.7 7.5 61 266-338 52-120 (139)
135 cd03003 PDI_a_ERdj5_N PDIa fam 92.7 0.37 8E-06 38.5 6.1 57 267-335 19-83 (101)
136 cd02963 TRX_DnaJ TRX domain, D 92.6 0.67 1.4E-05 38.3 7.7 60 266-337 24-92 (111)
137 cd02994 PDI_a_TMX PDIa family, 92.5 0.43 9.2E-06 37.9 6.2 55 269-335 19-82 (101)
138 cd02996 PDI_a_ERp44 PDIa famil 92.5 0.38 8.2E-06 39.0 6.0 56 268-335 20-89 (108)
139 cd03002 PDI_a_MPD1_like PDI fa 92.4 0.41 8.9E-06 38.2 6.1 57 266-332 18-80 (109)
140 PRK10357 putative glutathione 92.2 0.38 8.3E-06 42.8 6.2 66 271-345 2-68 (202)
141 cd02959 ERp19 Endoplasmic reti 92.1 0.33 7.2E-06 41.0 5.5 63 267-338 20-91 (117)
142 cd02999 PDI_a_ERp44_like PDIa 92.1 0.72 1.6E-05 37.7 7.2 55 266-332 18-78 (100)
143 cd02962 TMX2 TMX2 family; comp 91.9 0.56 1.2E-05 42.0 6.9 64 269-338 50-122 (152)
144 cd03001 PDI_a_P5 PDIa family, 91.9 0.8 1.7E-05 35.9 7.1 52 269-332 21-78 (103)
145 cd03020 DsbA_DsbC_DsbG DsbA fa 91.8 0.53 1.1E-05 42.6 6.7 36 265-306 76-113 (197)
146 cd03078 GST_N_Metaxin1_like GS 91.8 1.3 2.9E-05 34.6 8.1 60 279-348 11-70 (73)
147 cd02998 PDI_a_ERp38 PDIa famil 91.4 0.72 1.6E-05 36.0 6.3 53 268-332 20-81 (105)
148 PRK13972 GSH-dependent disulfi 91.3 0.89 1.9E-05 41.2 7.6 69 270-347 2-79 (215)
149 COG0625 Gst Glutathione S-tran 91.1 0.53 1.2E-05 42.4 6.0 70 271-348 2-73 (211)
150 cd03065 PDI_b_Calsequestrin_N 90.9 1.1 2.3E-05 38.8 7.4 63 266-338 26-101 (120)
151 COG2999 GrxB Glutaredoxin 2 [P 90.6 0.33 7.1E-06 45.9 4.2 63 283-349 8-71 (215)
152 COG3118 Thioredoxin domain-con 90.4 0.49 1.1E-05 47.4 5.4 60 269-340 46-113 (304)
153 PRK11752 putative S-transferas 90.4 1.2 2.5E-05 42.6 7.8 75 264-347 39-125 (264)
154 PLN02395 glutathione S-transfe 90.2 1.1 2.4E-05 40.2 7.1 70 270-348 3-74 (215)
155 KOG0907 Thioredoxin [Posttrans 90.2 1.1 2.3E-05 38.1 6.6 62 268-341 22-95 (106)
156 cd02972 DsbA_family DsbA famil 90.0 0.95 2.1E-05 34.1 5.7 32 270-307 1-38 (98)
157 cd03079 GST_N_Metaxin2 GST_N f 89.9 0.79 1.7E-05 36.7 5.3 55 285-348 18-72 (74)
158 cd03005 PDI_a_ERp46 PDIa famil 89.5 0.91 2E-05 35.6 5.4 56 269-336 19-85 (102)
159 PF02798 GST_N: Glutathione S- 89.3 1.8 4E-05 33.5 6.8 59 286-346 11-73 (76)
160 cd02988 Phd_like_VIAF Phosduci 88.8 0.83 1.8E-05 42.3 5.4 54 270-338 106-166 (192)
161 PF06953 ArsD: Arsenical resis 88.7 3.5 7.6E-05 36.3 8.9 78 267-346 1-94 (123)
162 cd02997 PDI_a_PDIR PDIa family 88.7 1.5 3.2E-05 34.4 6.0 61 267-337 18-88 (104)
163 PTZ00443 Thioredoxin domain-co 88.7 1.7 3.6E-05 41.5 7.4 59 267-337 53-119 (224)
164 COG3019 Predicted metal-bindin 88.6 1.7 3.8E-05 39.5 7.0 76 266-351 24-104 (149)
165 cd02993 PDI_a_APS_reductase PD 88.4 1.2 2.5E-05 36.5 5.5 55 266-331 21-83 (109)
166 PF11009 DUF2847: Protein of u 87.8 2.9 6.3E-05 35.9 7.6 67 266-338 18-92 (105)
167 PF14595 Thioredoxin_9: Thiore 87.7 0.37 7.9E-06 42.0 2.2 64 266-338 41-112 (129)
168 PF13728 TraF: F plasmid trans 87.6 1.7 3.6E-05 41.0 6.7 59 266-332 120-189 (215)
169 PTZ00057 glutathione s-transfe 87.1 5.4 0.00012 36.1 9.5 72 269-346 4-78 (205)
170 cd02955 SSP411 TRX domain, SSP 86.9 2.9 6.3E-05 36.2 7.3 62 269-338 17-95 (124)
171 cd02986 DLP Dim1 family, Dim1- 86.8 2 4.2E-05 37.4 6.1 57 269-337 17-81 (114)
172 PRK13728 conjugal transfer pro 86.7 2.1 4.6E-05 39.8 6.7 57 270-332 73-142 (181)
173 cd02995 PDI_a_PDI_a'_C PDIa fa 86.7 2 4.3E-05 33.6 5.6 54 266-332 18-79 (104)
174 cd03000 PDI_a_TMX3 PDIa family 85.7 2.3 5.1E-05 34.2 5.8 54 267-332 16-78 (104)
175 PLN00410 U5 snRNP protein, DIM 85.7 1 2.2E-05 40.3 3.9 57 268-335 25-89 (142)
176 cd03006 PDI_a_EFP1_N PDIa fami 85.7 2.1 4.5E-05 36.4 5.6 59 266-335 29-95 (113)
177 PRK10542 glutathionine S-trans 85.7 2.2 4.8E-05 37.7 6.1 60 286-347 10-73 (201)
178 cd02952 TRP14_like Human TRX-r 85.0 2.8 6E-05 36.3 6.2 59 267-332 22-96 (119)
179 PF07315 DUF1462: Protein of u 84.5 7.3 0.00016 33.1 8.2 71 271-347 1-89 (93)
180 cd02982 PDI_b'_family Protein 83.7 2.6 5.6E-05 33.2 5.1 55 268-332 14-74 (103)
181 PF06764 DUF1223: Protein of u 83.1 8.7 0.00019 36.3 9.1 66 270-341 2-86 (202)
182 cd03075 GST_N_Mu GST_N family, 83.0 8.4 0.00018 30.3 7.7 62 285-346 10-77 (82)
183 KOG4244 Failed axon connection 82.6 1.9 4.1E-05 42.8 4.6 67 266-345 42-112 (281)
184 TIGR02740 TraF-like TraF-like 81.1 4.4 9.6E-05 39.4 6.6 59 266-332 166-235 (271)
185 cd02992 PDI_a_QSOX PDIa family 80.5 3.9 8.4E-05 34.1 5.2 56 267-332 20-84 (114)
186 cd03009 TryX_like_TryX_NRX Try 79.4 8.5 0.00018 32.0 6.9 35 269-309 21-64 (131)
187 COG5494 Predicted thioredoxin/ 78.9 3.8 8.2E-05 39.9 5.2 69 268-348 11-85 (265)
188 cd02964 TryX_like_family Trypa 77.4 11 0.00023 31.8 7.0 36 268-309 19-63 (132)
189 KOG1695 Glutathione S-transfer 75.8 9.4 0.0002 36.2 6.9 68 270-346 4-71 (206)
190 PTZ00062 glutaredoxin; Provisi 75.8 8.8 0.00019 36.2 6.6 52 268-339 18-77 (204)
191 cd03010 TlpA_like_DsbE TlpA-li 75.5 16 0.00035 30.0 7.5 39 266-310 25-67 (127)
192 PRK15412 thiol:disulfide inter 75.5 14 0.00029 33.4 7.6 40 266-311 68-110 (185)
193 PRK00293 dipZ thiol:disulfide 74.9 9.1 0.0002 41.0 7.3 57 268-332 476-540 (571)
194 TIGR02738 TrbB type-F conjugat 74.8 13 0.00028 33.3 7.2 37 266-308 50-90 (153)
195 PRK03147 thiol-disulfide oxido 74.4 18 0.00039 31.1 7.9 39 266-310 61-106 (173)
196 PRK11657 dsbG disulfide isomer 71.3 5.6 0.00012 38.2 4.3 36 265-306 116-155 (251)
197 TIGR02739 TraF type-F conjugat 71.1 12 0.00026 36.6 6.6 59 266-332 150-219 (256)
198 TIGR00424 APS_reduc 5'-adenyly 70.8 11 0.00023 40.0 6.5 59 266-334 371-438 (463)
199 PF13899 Thioredoxin_7: Thiore 70.8 19 0.00041 27.9 6.5 51 269-332 20-79 (82)
200 COG3634 AhpF Alkyl hydroperoxi 69.6 8.8 0.00019 40.2 5.4 72 252-338 105-181 (520)
201 TIGR00385 dsbE periplasmic pro 69.4 22 0.00048 31.5 7.4 37 267-309 64-103 (173)
202 PTZ00102 disulphide isomerase; 69.4 12 0.00026 37.7 6.4 58 266-335 49-117 (477)
203 COG4837 Uncharacterized protei 68.4 42 0.00091 29.0 8.3 76 266-346 3-95 (106)
204 TIGR01130 ER_PDI_fam protein d 67.0 14 0.00031 36.5 6.3 57 268-336 20-87 (462)
205 PF11287 DUF3088: Protein of u 67.0 11 0.00023 33.0 4.7 53 279-334 19-76 (112)
206 PF10568 Tom37: Outer mitochon 66.6 21 0.00045 28.3 6.0 56 282-347 12-71 (72)
207 PLN02309 5'-adenylylsulfate re 66.1 12 0.00027 39.4 5.9 56 266-332 365-428 (457)
208 PTZ00102 disulphide isomerase; 64.5 40 0.00088 34.0 9.0 55 266-332 375-437 (477)
209 PF13462 Thioredoxin_4: Thiore 62.7 13 0.00029 31.3 4.5 40 264-309 10-57 (162)
210 cd03023 DsbA_Com1_like DsbA fa 61.7 7.5 0.00016 32.2 2.7 58 288-347 86-150 (154)
211 KOG4420 Uncharacterized conser 61.4 5.2 0.00011 40.0 2.0 72 270-349 27-100 (325)
212 PRK13703 conjugal pilus assemb 60.4 14 0.0003 36.1 4.6 59 266-332 143-212 (248)
213 cd02966 TlpA_like_family TlpA- 60.3 50 0.0011 25.0 7.0 38 266-309 19-63 (116)
214 cd03023 DsbA_Com1_like DsbA fa 59.8 11 0.00024 31.2 3.5 37 265-307 4-45 (154)
215 cd05295 MDH_like Malate dehydr 57.9 24 0.00052 37.3 6.2 68 282-349 2-83 (452)
216 cd02970 PRX_like2 Peroxiredoxi 56.9 54 0.0012 27.1 7.1 54 268-331 25-86 (149)
217 cd02967 mauD Methylamine utili 56.5 48 0.001 26.4 6.5 25 266-296 21-45 (114)
218 PF08534 Redoxin: Redoxin; In 56.4 52 0.0011 27.6 7.0 47 266-318 28-82 (146)
219 PF13462 Thioredoxin_4: Thiore 56.2 18 0.0004 30.5 4.2 21 326-346 136-156 (162)
220 COG5429 Uncharacterized secret 55.8 11 0.00025 37.0 3.2 69 266-340 41-128 (261)
221 cd03022 DsbA_HCCA_Iso DsbA fam 55.8 14 0.0003 32.3 3.6 59 288-348 124-189 (192)
222 PF13905 Thioredoxin_8: Thiore 54.6 46 0.00099 25.8 6.0 35 269-309 4-46 (95)
223 KOG0867 Glutathione S-transfer 54.5 45 0.00097 31.3 6.9 71 269-347 2-74 (226)
224 cd03008 TryX_like_RdCVF Trypar 53.6 39 0.00084 30.2 6.0 36 269-310 28-77 (146)
225 KOG0868 Glutathione S-transfer 52.8 27 0.00059 33.4 5.1 62 283-348 15-79 (217)
226 TIGR03143 AhpF_homolog putativ 52.2 48 0.001 35.1 7.4 52 269-332 369-425 (555)
227 cd02958 UAS UAS family; UAS is 51.1 26 0.00056 28.8 4.2 70 268-346 18-103 (114)
228 TIGR01130 ER_PDI_fam protein d 48.6 33 0.00072 34.0 5.3 53 266-332 364-425 (462)
229 cd03019 DsbA_DsbA DsbA family, 48.3 24 0.00053 30.3 3.8 36 265-306 14-55 (178)
230 PF04134 DUF393: Protein of un 47.4 44 0.00095 27.3 5.0 65 283-349 6-76 (114)
231 PF05394 AvrB_AvrC: Avirulence 45.8 7.4 0.00016 39.3 0.2 11 36-46 25-35 (326)
232 TIGR02661 MauD methylamine deh 44.1 58 0.0013 29.5 5.8 33 268-306 76-112 (189)
233 PF01323 DSBA: DSBA-like thior 42.0 49 0.0011 28.8 4.8 37 269-311 1-42 (193)
234 PF10865 DUF2703: Domain of un 41.5 67 0.0015 28.3 5.5 48 281-337 12-72 (120)
235 COG3340 PepE Peptidase E [Amin 41.3 2.1E+02 0.0045 28.0 9.2 84 268-359 32-115 (224)
236 PF02114 Phosducin: Phosducin; 41.0 31 0.00068 33.8 3.7 129 214-361 97-239 (265)
237 PF00578 AhpC-TSA: AhpC/TSA fa 40.2 71 0.0015 25.6 5.2 44 284-331 38-88 (124)
238 PF15643 Tox-PL-2: Papain fold 40.2 39 0.00086 29.1 3.7 51 283-338 20-73 (100)
239 PRK14018 trifunctional thiored 39.6 1.1E+02 0.0024 33.1 7.8 24 266-295 56-79 (521)
240 cd03011 TlpA_like_ScsD_MtbDsbE 39.6 28 0.00062 28.2 2.7 24 266-295 20-43 (123)
241 COG2143 Thioredoxin-related pr 38.7 47 0.001 31.2 4.2 64 264-335 40-125 (182)
242 PRK11509 hydrogenase-1 operon 38.5 85 0.0018 28.0 5.7 63 269-340 36-107 (132)
243 COG0526 TrxA Thiol-disulfide i 38.3 63 0.0014 23.7 4.3 35 283-317 43-84 (127)
244 cd03007 PDI_a_ERp29_N PDIa fam 38.0 1.8E+02 0.004 25.2 7.6 67 266-335 18-91 (116)
245 PF01323 DSBA: DSBA-like thior 37.5 22 0.00047 31.1 1.8 58 288-347 124-189 (193)
246 cd06387 PBP1_iGluR_AMPA_GluR3 37.5 1E+02 0.0023 31.1 6.9 127 212-346 3-146 (372)
247 PF00731 AIRC: AIR carboxylase 36.1 93 0.002 28.3 5.7 37 270-310 3-39 (150)
248 PF04783 DUF630: Protein of un 35.2 17 0.00037 28.6 0.7 12 2-13 1-12 (60)
249 PRK09437 bcp thioredoxin-depen 34.5 1.1E+02 0.0023 26.1 5.7 25 284-308 43-74 (154)
250 PTZ00056 glutathione peroxidas 34.2 1.2E+02 0.0026 28.0 6.3 35 266-306 39-80 (199)
251 smart00594 UAS UAS domain. 32.6 1.7E+02 0.0036 24.6 6.4 45 283-332 38-92 (122)
252 PLN02412 probable glutathione 32.3 1.4E+02 0.0031 26.4 6.2 32 269-306 32-70 (167)
253 cd03019 DsbA_DsbA DsbA family, 31.7 28 0.00062 29.9 1.6 52 288-341 100-158 (178)
254 PF06110 DUF953: Eukaryotic pr 31.2 49 0.0011 28.9 3.0 66 267-332 19-95 (119)
255 PF04566 RNA_pol_Rpb2_4: RNA p 31.0 42 0.0009 26.2 2.3 19 330-348 1-19 (63)
256 PHA03075 glutaredoxin-like pro 30.8 53 0.0012 29.3 3.1 32 267-304 2-33 (123)
257 KOG0908 Thioredoxin-like prote 30.7 83 0.0018 31.6 4.8 62 265-338 20-88 (288)
258 PRK10954 periplasmic protein d 29.1 33 0.00071 31.5 1.6 52 288-341 124-182 (207)
259 cd00340 GSH_Peroxidase Glutath 28.4 1.4E+02 0.0031 25.6 5.4 32 268-306 24-62 (152)
260 cd03025 DsbA_FrnE_like DsbA fa 27.8 84 0.0018 27.5 4.0 30 269-304 2-37 (193)
261 cd03012 TlpA_like_DipZ_like Tl 27.3 2E+02 0.0044 23.7 6.0 23 266-294 23-45 (126)
262 PTZ00256 glutathione peroxidas 27.3 1.7E+02 0.0037 26.3 5.9 30 271-306 46-82 (183)
263 PLN02399 phospholipid hydroper 26.1 1.6E+02 0.0035 28.4 5.8 35 266-306 99-140 (236)
264 PF11202 PRTase_1: Phosphoribo 25.8 5E+02 0.011 26.0 9.1 94 217-335 52-153 (257)
265 cd03017 PRX_BCP Peroxiredoxin 25.5 2.1E+02 0.0046 23.5 5.8 29 284-312 36-71 (140)
266 cd03024 DsbA_FrnE DsbA family, 24.8 61 0.0013 28.7 2.5 22 325-346 174-196 (201)
267 TIGR01162 purE phosphoribosyla 24.4 2E+02 0.0043 26.5 5.8 66 283-348 10-100 (156)
268 COG3011 Predicted thiol-disulf 23.9 4.2E+02 0.0092 24.0 7.6 62 283-346 17-82 (137)
269 COG2608 CopZ Copper chaperone 23.6 1.7E+02 0.0037 22.7 4.5 34 269-307 3-38 (71)
270 PF09413 DUF2007: Domain of un 23.2 89 0.0019 23.4 2.8 53 270-335 1-53 (67)
271 PF00403 HMA: Heavy-metal-asso 22.7 2.1E+02 0.0045 20.8 4.7 25 283-307 8-34 (62)
272 cd02971 PRX_family Peroxiredox 22.7 2.4E+02 0.0051 23.1 5.5 24 284-307 35-65 (140)
273 cd03014 PRX_Atyp2cys Peroxired 22.6 3.2E+02 0.0068 22.8 6.4 38 266-308 26-68 (143)
274 TIGR01626 ytfJ_HI0045 conserve 22.5 3E+02 0.0064 25.7 6.6 38 266-309 59-105 (184)
275 cd00079 HELICc Helicase superf 22.4 3.9E+02 0.0085 21.0 7.5 48 266-320 27-74 (131)
276 cd06388 PBP1_iGluR_AMPA_GluR4 22.3 3.4E+02 0.0073 27.2 7.5 126 212-347 3-147 (371)
277 TIGR00147 lipid kinase, YegS/R 22.1 3.8E+02 0.0083 25.5 7.6 39 268-306 2-40 (293)
278 cd02968 SCO SCO (an acronym fo 21.6 1.4E+02 0.0031 24.6 4.1 18 266-289 22-40 (142)
279 cd03018 PRX_AhpE_like Peroxire 21.4 2.3E+02 0.0049 23.7 5.2 24 284-307 41-71 (149)
280 cd03022 DsbA_HCCA_Iso DsbA fam 20.6 1.3E+02 0.0029 26.1 3.8 30 270-305 1-34 (192)
281 cd03021 DsbA_GSTK DsbA family, 20.4 1.6E+02 0.0034 26.9 4.4 28 269-302 2-33 (209)
282 PLN02234 1-deoxy-D-xylulose-5- 20.1 2.6E+02 0.0057 31.0 6.6 80 268-358 545-630 (641)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-38 Score=300.17 Aligned_cols=108 Identities=60% Similarity=1.013 Sum_probs=103.1
Q ss_pred HHHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCC--CCccccEEE
Q 038258 254 LLNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMES--KQVKVPLVF 331 (366)
Q Consensus 254 ~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~--~~~tVPqVF 331 (366)
++..+++.|+|++++.||||+|++||+|+|+++|..||+||++++|.|+|+||+||..|++||++++|. ...++|+||
T Consensus 117 ~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVF 196 (281)
T KOG2824|consen 117 LLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVF 196 (281)
T ss_pred chhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEE
Confidence 445788999999999999999999999999999999999999999999999999999999999999997 567999999
Q ss_pred ECCEEEeccHHHHhHHHhCcHHHHhccCcc
Q 038258 332 VKGRLIGGVDEVMKLEEEGKLEILFDRIPK 361 (366)
Q Consensus 332 I~Gk~IGG~dEl~eL~EsGeL~~LLk~~~~ 361 (366)
|+|+||||+++|++|+|.|+|.++|+++|.
T Consensus 197 V~GryIGgaeeV~~LnE~GkL~~lL~~~p~ 226 (281)
T KOG2824|consen 197 VKGRYIGGAEEVVRLNEEGKLGKLLKGIPC 226 (281)
T ss_pred EccEEeccHHHhhhhhhcchHHHHHhcCCC
Confidence 999999999999999999999999999993
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.93 E-value=1.6e-25 Score=198.01 Aligned_cols=96 Identities=57% Similarity=0.934 Sum_probs=90.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCC--CCccccEEEECCEEEeccHHHHhH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMES--KQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~--~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
+|+||+|+++|||+|||||.+||++|++++|.|+++||++|+++++||++++|. .+.++|||||+|+||||++|+++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999886 246999999999999999999999
Q ss_pred HHhCcHHHHhccCccccc
Q 038258 347 EEEGKLEILFDRIPKAAI 364 (366)
Q Consensus 347 ~EsGeL~~LLk~~~~~~~ 364 (366)
+++|+|.++|+++++...
T Consensus 81 ~e~G~L~~lL~~~~~~~~ 98 (147)
T cd03031 81 NESGELRKLLKGIRARAG 98 (147)
T ss_pred HHcCCHHHHHhhcccccC
Confidence 999999999999976443
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.87 E-value=5.1e-22 Score=169.57 Aligned_cols=100 Identities=18% Similarity=0.287 Sum_probs=90.4
Q ss_pred HHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCE
Q 038258 256 NVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGR 335 (366)
Q Consensus 256 ~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk 335 (366)
+.+++. +..++||||+++. +....||||.+|+++|+.+|+.|.++||..+++.+++|++++|++ |||||||||+
T Consensus 6 ~~v~~~---I~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~--TVPQIFI~G~ 79 (115)
T PRK10824 6 EKIQRQ---IAENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWP--TFPQLWVDGE 79 (115)
T ss_pred HHHHHH---HhcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCC--CCCeEEECCE
Confidence 455666 5889999999973 444569999999999999999999999999999999999999876 9999999999
Q ss_pred EEeccHHHHhHHHhCcHHHHhccCcc
Q 038258 336 LIGGVDEVMKLEEEGKLEILFDRIPK 361 (366)
Q Consensus 336 ~IGG~dEl~eL~EsGeL~~LLk~~~~ 361 (366)
||||++++.+|+++|+|+++|+.+++
T Consensus 80 ~IGG~ddl~~l~~~G~L~~lL~~~~~ 105 (115)
T PRK10824 80 LVGGCDIVIEMYQRGELQQLIKETAA 105 (115)
T ss_pred EEcChHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999998765
No 4
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.86 E-value=9.4e-22 Score=161.67 Aligned_cols=89 Identities=18% Similarity=0.302 Sum_probs=84.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCC--CCccccEEEECCEEEeccHHHHhH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMES--KQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~--~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
.|+||++|++|+|++...|+.++++|++++|+|+++||++|++.+++|++++|. +..++|||||||+||||++|+.+|
T Consensus 1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999875 346999999999999999999999
Q ss_pred HHhCcHHHHhc
Q 038258 347 EEEGKLEILFD 357 (366)
Q Consensus 347 ~EsGeL~~LLk 357 (366)
+++|+|+++|+
T Consensus 81 ~e~g~L~~lLk 91 (92)
T cd03030 81 KENNTLEEFLK 91 (92)
T ss_pred HhCCCHHHHhC
Confidence 99999999986
No 5
>PHA03050 glutaredoxin; Provisional
Probab=99.86 E-value=2e-21 Score=163.24 Aligned_cols=96 Identities=16% Similarity=0.298 Sum_probs=86.9
Q ss_pred HhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCC---cEEEEEcCC---CHHHHHHHHHHhCCCCccccEE
Q 038258 257 VYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQV---QTLERDISM---DSGFKEELRALMESKQVKVPLV 330 (366)
Q Consensus 257 ~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV---~y~ErDVs~---D~e~reELkeltG~~~~tVPqV 330 (366)
.++++ +..++|+||++++ ||||.+|+++|++++| .|+++||+. +.+.+++|.+++|.. +||+|
T Consensus 5 ~v~~~---i~~~~V~vys~~~------CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~--tVP~I 73 (108)
T PHA03050 5 FVQQR---LANNKVTIFVKFT------CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGR--TVPRI 73 (108)
T ss_pred HHHHH---hccCCEEEEECCC------ChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCC--CcCEE
Confidence 44555 4788999999995 9999999999999999 799999996 467899999999976 99999
Q ss_pred EECCEEEeccHHHHhHHHhCcHHHHhccCcccc
Q 038258 331 FVKGRLIGGVDEVMKLEEEGKLEILFDRIPKAA 363 (366)
Q Consensus 331 FI~Gk~IGG~dEl~eL~EsGeL~~LLk~~~~~~ 363 (366)
||||++|||++|+++|+++|+|.++|+.+++.+
T Consensus 74 fI~g~~iGG~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 74 FFGKTSIGGYSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred EECCEEEeChHHHHHHHHcCCHHHHHHHccccc
Confidence 999999999999999999999999999987654
No 6
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.86 E-value=1.6e-21 Score=160.70 Aligned_cols=89 Identities=29% Similarity=0.469 Sum_probs=80.9
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHH---HHHHHHHHhCCCCccccEEEECCEEEeccH
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSG---FKEELRALMESKQVKVPLVFVKGRLIGGVD 341 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e---~reELkeltG~~~~tVPqVFI~Gk~IGG~d 341 (366)
+.+++|+||++++ ||||.+++++|++++|+|.++||+.++. +++++.+++|.. ++|||||+|++|||++
T Consensus 5 i~~~~Vvvysk~~------Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~--tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 5 VSEKAVVIFSRSS------CCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSP--AVPAVFVGGKLVGGLE 76 (99)
T ss_pred hccCCEEEEECCC------CHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCC--CcCeEEECCEEEcCHH
Confidence 4778999999995 9999999999999999999999998854 556787788876 9999999999999999
Q ss_pred HHHhHHHhCcHHHHhccCcc
Q 038258 342 EVMKLEEEGKLEILFDRIPK 361 (366)
Q Consensus 342 El~eL~EsGeL~~LLk~~~~ 361 (366)
|+++|+++|+|.++|+.+++
T Consensus 77 dl~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHHcCCHHHHHHHhCc
Confidence 99999999999999988765
No 7
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.85 E-value=5.7e-21 Score=156.89 Aligned_cols=89 Identities=21% Similarity=0.363 Sum_probs=81.3
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHH
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVM 344 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~ 344 (366)
..+++|+||+++. ..+..||||.+|+++|+.+||+|.++||..++..+++|++++|.. ++|||||||++|||++|++
T Consensus 9 i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~--tvP~vfi~g~~iGG~ddl~ 85 (97)
T TIGR00365 9 IKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWP--TIPQLYVKGEFVGGCDIIM 85 (97)
T ss_pred hccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCC--CCCEEEECCEEEeChHHHH
Confidence 4789999999853 233469999999999999999999999999999999999999876 9999999999999999999
Q ss_pred hHHHhCcHHHHh
Q 038258 345 KLEEEGKLEILF 356 (366)
Q Consensus 345 eL~EsGeL~~LL 356 (366)
+|+++|+|.++|
T Consensus 86 ~l~~~g~L~~~l 97 (97)
T TIGR00365 86 EMYQSGELQTLL 97 (97)
T ss_pred HHHHCcChHHhC
Confidence 999999999886
No 8
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.83 E-value=3.6e-20 Score=149.28 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=78.6
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHH
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVM 344 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~ 344 (366)
+.+++||||+++. .....||+|.+|+++|+++||+|.++||..|++++++|.+++|.. ++|+|||||++|||+++++
T Consensus 5 i~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~--tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 5 IKENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWP--TFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred hccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCC--CCCEEEECCEEEeCHHHHH
Confidence 4678999999963 344469999999999999999999999999999999999999976 9999999999999999999
Q ss_pred hHHHhCcHH
Q 038258 345 KLEEEGKLE 353 (366)
Q Consensus 345 eL~EsGeL~ 353 (366)
+|+++|+|+
T Consensus 82 ~l~~~g~L~ 90 (90)
T cd03028 82 EMHESGELQ 90 (90)
T ss_pred HHHHcCCcC
Confidence 999999984
No 9
>PRK10638 glutaredoxin 3; Provisional
Probab=99.81 E-value=1.7e-19 Score=142.24 Aligned_cols=83 Identities=29% Similarity=0.484 Sum_probs=78.0
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
|.+|+||+++ +||+|.+|+.+|+++||+|.++||+.++..++++.+++|.. ++|+||+||++|||++++.++
T Consensus 1 m~~v~ly~~~------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~--~vP~i~~~g~~igG~~~~~~~ 72 (83)
T PRK10638 1 MANVEIYTKA------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRT--TVPQIFIDAQHIGGCDDLYAL 72 (83)
T ss_pred CCcEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCC--CcCEEEECCEEEeCHHHHHHH
Confidence 4579999999 49999999999999999999999999988889999999876 899999999999999999999
Q ss_pred HHhCcHHHHhc
Q 038258 347 EEEGKLEILFD 357 (366)
Q Consensus 347 ~EsGeL~~LLk 357 (366)
+++|+|..+|+
T Consensus 73 ~~~g~l~~~~~ 83 (83)
T PRK10638 73 DARGGLDPLLK 83 (83)
T ss_pred HHcCCHHHHhC
Confidence 99999999885
No 10
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.81 E-value=1.6e-19 Score=139.85 Aligned_cols=79 Identities=28% Similarity=0.540 Sum_probs=74.9
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHHh
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEEE 349 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~Es 349 (366)
|+||+++ +||+|.+|+++|+++||+|.++||++++..++++.+++|.. ++|+|||+|++|||++++.+|+++
T Consensus 1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~--~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRR--TVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCC--CcCEEEECCEEEcChHHHHHHHHc
Confidence 6899999 59999999999999999999999999999999999998865 999999999999999999999999
Q ss_pred CcHHHHh
Q 038258 350 GKLEILF 356 (366)
Q Consensus 350 GeL~~LL 356 (366)
|+|+++|
T Consensus 73 g~l~~~l 79 (79)
T TIGR02181 73 GKLDPLL 79 (79)
T ss_pred CChhhhC
Confidence 9999876
No 11
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1e-18 Score=147.20 Aligned_cols=89 Identities=27% Similarity=0.515 Sum_probs=81.3
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCC---HHHHHHHHHHhCCCCccccEEEECCEEEeccH
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMD---SGFKEELRALMESKQVKVPLVFVKGRLIGGVD 341 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D---~e~reELkeltG~~~~tVPqVFI~Gk~IGG~d 341 (366)
+.+++||||++++ ||||.+++.+|..+++.+..++++.+ .+++++|.+++|++ +||+|||+|++|||++
T Consensus 11 i~~~~VVifSKs~------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~--tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 11 ISENPVVIFSKSS------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQR--TVPNVFIGGKFIGGAS 82 (104)
T ss_pred hhcCCEEEEECCc------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCC--CCCEEEECCEEEcCHH
Confidence 5889999999995 99999999999999999888888765 36788888888887 9999999999999999
Q ss_pred HHHhHHHhCcHHHHhccCcc
Q 038258 342 EVMKLEEEGKLEILFDRIPK 361 (366)
Q Consensus 342 El~eL~EsGeL~~LLk~~~~ 361 (366)
|+++||.+|+|..+|+.+.+
T Consensus 83 dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 83 DLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred HHHHHHHcCCHHHHHHHhhc
Confidence 99999999999999998765
No 12
>PTZ00062 glutaredoxin; Provisional
Probab=99.76 E-value=4.6e-18 Score=157.64 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=87.7
Q ss_pred HHHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEEC
Q 038258 254 LLNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVK 333 (366)
Q Consensus 254 ~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~ 333 (366)
+.+.++++ +..++|+||+++. .....|+||.+++++|++++|+|.++||..|++.+++|++++|++ ++||||||
T Consensus 102 ~~~~v~~l---i~~~~Vvvf~Kg~-~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~--TvPqVfI~ 175 (204)
T PTZ00062 102 TVEKIERL---IRNHKILLFMKGS-KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWP--TYPQLYVN 175 (204)
T ss_pred HHHHHHHH---HhcCCEEEEEccC-CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCC--CCCeEEEC
Confidence 44566777 5899999999952 222369999999999999999999999999999999999999875 99999999
Q ss_pred CEEEeccHHHHhHHHhCcHHHHhcc
Q 038258 334 GRLIGGVDEVMKLEEEGKLEILFDR 358 (366)
Q Consensus 334 Gk~IGG~dEl~eL~EsGeL~~LLk~ 358 (366)
|++|||++++++|+++|+|+++|..
T Consensus 176 G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 176 GELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred CEEEcChHHHHHHHHcCChhhhhhh
Confidence 9999999999999999999998864
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.75 E-value=1e-17 Score=127.52 Aligned_cols=75 Identities=28% Similarity=0.513 Sum_probs=69.2
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
+|+||+++ .||+|.+|+.+|++++|+|+++||+.+++.++++.+.+|.. .++|+|||+|++|||++++++|++
T Consensus 1 ~i~ly~~~------~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~-~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKP------NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGR-RTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCC------CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCC-CccCEEEECCEEEeChHHHHHHHh
Confidence 58999999 49999999999999999999999999988889998888753 379999999999999999999999
Q ss_pred hC
Q 038258 349 EG 350 (366)
Q Consensus 349 sG 350 (366)
+|
T Consensus 74 ~g 75 (75)
T cd03418 74 KG 75 (75)
T ss_pred Cc
Confidence 87
No 14
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.73 E-value=1.5e-17 Score=127.77 Aligned_cols=73 Identities=32% Similarity=0.520 Sum_probs=68.2
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
.+|+||+++ .||+|.+|+++|+++||+|+++||..++..+++|.+++|.. ++|+|||||++|||++|+.+|+
T Consensus 1 ~~v~ly~~~------~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~--~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRL------GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSS--VVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecC------CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCC--CcCEEEECCEEEeCHHHHHhhc
Confidence 369999999 49999999999999999999999999999999999999875 8999999999999999999986
Q ss_pred H
Q 038258 348 E 348 (366)
Q Consensus 348 E 348 (366)
+
T Consensus 73 ~ 73 (73)
T cd03027 73 E 73 (73)
T ss_pred C
Confidence 4
No 15
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.70 E-value=6.3e-17 Score=124.50 Aligned_cols=79 Identities=25% Similarity=0.532 Sum_probs=71.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCc--EEEEEcCCC---HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQ--TLERDISMD---SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVM 344 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~--y~ErDVs~D---~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~ 344 (366)
|++|+++| ||+|.+++.+|+++++. |..++|+.+ ...++++.+.+|.. ++|+|||+|++|||++++.
T Consensus 1 V~~f~~~~------Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~--~vP~v~i~g~~igg~~~~~ 72 (84)
T TIGR02180 1 VVVFSKSY------CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQR--TVPNIFINGKFIGGCSDLL 72 (84)
T ss_pred CEEEECCC------ChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCC--CCCeEEECCEEEcCHHHHH
Confidence 68999996 99999999999999999 888888764 45677788888875 8999999999999999999
Q ss_pred hHHHhCcHHHHh
Q 038258 345 KLEEEGKLEILF 356 (366)
Q Consensus 345 eL~EsGeL~~LL 356 (366)
+++++|+|..+|
T Consensus 73 ~~~~~g~l~~~~ 84 (84)
T TIGR02180 73 ALYKSGKLAELL 84 (84)
T ss_pred HHHHcCChhhhC
Confidence 999999999876
No 16
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.4e-17 Score=129.91 Aligned_cols=76 Identities=29% Similarity=0.544 Sum_probs=67.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
.|+||+++ +||||.+++++|+++||.|.++|+.+++ +.++.+++..|.+ +||||||||++|||++++.++
T Consensus 2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~--tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQR--TVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCC--CcCEEEECCEEEeCcccHHHH
Confidence 58999999 5999999999999999999999999987 5556666665766 999999999999999999999
Q ss_pred HHhCcH
Q 038258 347 EEEGKL 352 (366)
Q Consensus 347 ~EsGeL 352 (366)
+..|.|
T Consensus 74 ~~~~~l 79 (80)
T COG0695 74 EAKGKL 79 (80)
T ss_pred HhhccC
Confidence 998876
No 17
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-16 Score=134.44 Aligned_cols=99 Identities=21% Similarity=0.317 Sum_probs=90.7
Q ss_pred HHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCC-CcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEEC
Q 038258 255 LNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQ-VQTLERDISMDSGFKEELRALMESKQVKVPLVFVK 333 (366)
Q Consensus 255 l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~g-V~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~ 333 (366)
.+.+++. +..|+|++|.+.. +....|.|+.++.++|...| +.|..+||..|+++|+.|++.+++ +|+||+||+
T Consensus 5 ~~~I~~~---i~~n~VvLFMKGt-p~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W--PT~PQLyi~ 78 (105)
T COG0278 5 LDRIQKQ---IKENPVVLFMKGT-PEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW--PTFPQLYVN 78 (105)
T ss_pred HHHHHHH---hhcCceEEEecCC-CCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC--CCCceeeEC
Confidence 3555555 5889999999994 88899999999999999999 899999999999999999999875 599999999
Q ss_pred CEEEeccHHHHhHHHhCcHHHHhccC
Q 038258 334 GRLIGGVDEVMKLEEEGKLEILFDRI 359 (366)
Q Consensus 334 Gk~IGG~dEl~eL~EsGeL~~LLk~~ 359 (366)
|++|||+|-+.+|+++|+|+++|+.+
T Consensus 79 GEfvGG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 79 GEFVGGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred CEEeccHHHHHHHHHcchHHHHHHhc
Confidence 99999999999999999999999865
No 18
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.67 E-value=2.4e-16 Score=121.34 Aligned_cols=79 Identities=29% Similarity=0.592 Sum_probs=70.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCC---HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHh
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMD---SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMK 345 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D---~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~e 345 (366)
+|++|++.+ ||+|..++.+|+++++.|.+++++.+ ...++++++++|.. ++|+||++|++|||++++.+
T Consensus 1 ~v~~y~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--~~P~v~~~g~~igg~~~~~~ 72 (82)
T cd03419 1 PVVVFSKSY------CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQR--TVPNVFIGGKFIGGCDDLMA 72 (82)
T ss_pred CEEEEEcCC------CHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCC--CCCeEEECCEEEcCHHHHHH
Confidence 589999995 99999999999999999998888865 44577888888865 99999999999999999999
Q ss_pred HHHhCcHHHH
Q 038258 346 LEEEGKLEIL 355 (366)
Q Consensus 346 L~EsGeL~~L 355 (366)
+.++|+|.++
T Consensus 73 ~~~~g~l~~~ 82 (82)
T cd03419 73 LHKSGKLVKL 82 (82)
T ss_pred HHHcCCccCC
Confidence 9999999753
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.67 E-value=3.3e-16 Score=119.78 Aligned_cols=70 Identities=27% Similarity=0.476 Sum_probs=63.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
+|+||+++ +||+|.+|+++|+++||+|+++||+.+.. .++++.++|.. ++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~~------~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~--~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKP------GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAM--TVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECC------CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCC--CcCeEEECCEEEeCHHHHHHHh
Confidence 69999999 59999999999999999999999998874 56787877875 9999999999999999998874
No 20
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.65 E-value=1.1e-15 Score=112.13 Aligned_cols=72 Identities=32% Similarity=0.597 Sum_probs=67.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
+|+||++++ ||+|.+++.+|++++++|.++|+..+++.+++|.+++|.. ++|+||+||++|||++++++|++
T Consensus 1 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~--~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKST------CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWP--TVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECCC------CHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCC--CcCEEEECCEEEecHHHHHHhhC
Confidence 589999995 9999999999999999999999999988899999998875 89999999999999999999874
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.65 E-value=9.5e-16 Score=121.15 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=67.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH-----CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES-----HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEV 343 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes-----~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl 343 (366)
+|+||+++ +||+|.+|+++|++ .+|+|.++||..+...++++.+..|....++|||||||++|||++|+
T Consensus 2 ~v~iy~~~------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~ 75 (85)
T PRK11200 2 FVVIFGRP------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF 75 (85)
T ss_pred EEEEEeCC------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence 69999999 49999999999999 89999999999887677889888886334899999999999999999
Q ss_pred HhHHHh
Q 038258 344 MKLEEE 349 (366)
Q Consensus 344 ~eL~Es 349 (366)
.++++.
T Consensus 76 ~~~~~~ 81 (85)
T PRK11200 76 EAYVKE 81 (85)
T ss_pred HHHHHH
Confidence 998875
No 22
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.65 E-value=1e-15 Score=120.09 Aligned_cols=73 Identities=29% Similarity=0.434 Sum_probs=65.0
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHh
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMK 345 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~e 345 (366)
..++|+||++++ ||+|.+++++|+++||+|+++||+.+... +++.+.+|.. ++|+|||||++|||++++++
T Consensus 6 ~~~~V~ly~~~~------Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~--~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 6 KPESVVVFTKPG------CPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGAT--TVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred CCCCEEEEECCC------CHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCC--CcCeEEECCEEEcCHHHHHH
Confidence 567999999995 99999999999999999999999987653 5677777865 89999999999999999987
Q ss_pred HH
Q 038258 346 LE 347 (366)
Q Consensus 346 L~ 347 (366)
+.
T Consensus 77 ~l 78 (79)
T TIGR02190 77 YL 78 (79)
T ss_pred Hh
Confidence 63
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.64 E-value=1.2e-15 Score=122.12 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=65.9
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVM 344 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~ 344 (366)
|+||+++ +||+|.+|+++|+++ ++.|.++||..+...++++.+.+|....+||+|||||++|||++|++
T Consensus 2 V~vys~~------~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~ 75 (86)
T TIGR02183 2 VVIFGRP------GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFE 75 (86)
T ss_pred EEEEeCC------CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHH
Confidence 8999999 499999999999998 46799999997766677898888862238999999999999999999
Q ss_pred hHHHhC
Q 038258 345 KLEEEG 350 (366)
Q Consensus 345 eL~EsG 350 (366)
++++++
T Consensus 76 ~~~~~~ 81 (86)
T TIGR02183 76 QLVKEN 81 (86)
T ss_pred HHHHhc
Confidence 998875
No 24
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.5e-14 Score=134.63 Aligned_cols=137 Identities=20% Similarity=0.331 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHhhhhhcccccccCCCcCCCCCCCchhhHHHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHH
Q 038258 216 DPDLIANYERELSEGEEQIKRIISPTFSNRNCKSSSESLLNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIE 295 (366)
Q Consensus 216 dp~l~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLe 295 (366)
.|.+.+++++.-..-..+.....+++-+.-...+... +...+++. ...++|+||.++. +....|.+.+++..+|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~l~~l---v~a~~v~lFmKG~-p~~P~CGFS~~~v~iL~ 165 (227)
T KOG0911|consen 91 PPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETD-LDNRLEKL---VKAKPVMLFMKGT-PEEPKCGFSRQLVGILQ 165 (227)
T ss_pred cHHHHHHHHHhhhhcccccCCCCCcchhcccccchhh-HHHHHHHh---cccCeEEEEecCC-CCcccccccHHHHHHHH
Confidence 3667777776555443222222222211100112223 44466666 5889999999995 78889999999999999
Q ss_pred HCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHHhCcHHHHhccC
Q 038258 296 SHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEEEGKLEILFDRI 359 (366)
Q Consensus 296 s~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~EsGeL~~LLk~~ 359 (366)
.++|.|..+||..|++.|+-+++++.+ +|+||+||+|+++||+|-+.+|+++|+|+..|+.+
T Consensus 166 ~~nV~~~~fdIL~DeelRqglK~fSdW--PTfPQlyI~GEFiGGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 166 SHNVNYTIFDVLTDEELRQGLKEFSDW--PTFPQLYVKGEFIGGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred HcCCCeeEEeccCCHHHHHHhhhhcCC--CCccceeECCEeccCcHHHHHHhhcccHHHHhhcC
Confidence 999999999999999999999999875 59999999999999999999999999999998764
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.56 E-value=1.7e-14 Score=106.92 Aligned_cols=60 Identities=32% Similarity=0.594 Sum_probs=56.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEE
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLI 337 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~I 337 (366)
|+||+++ +||+|.+++++|+++|++|+++||+.++..+++|++++|.. ++|+|||||++|
T Consensus 1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~--~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVR--TVPQVFIDGKFI 60 (60)
T ss_dssp EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSS--SSSEEEETTEEE
T ss_pred cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCC--ccCEEEECCEEC
Confidence 7899999 59999999999999999999999999999999999998765 999999999987
No 26
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.55 E-value=2.1e-14 Score=144.55 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHH--------hCCCCccccEEEECCEEEe
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRAL--------MESKQVKVPLVFVKGRLIG 338 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkel--------tG~~~~tVPqVFI~Gk~IG 338 (366)
|.+|+||+++ +||+|.++|++|+++||+|+++||+.++...+.+.+. +|.+ +||||||||++||
T Consensus 1 m~~V~vys~~------~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~--tvP~ifi~~~~ig 72 (410)
T PRK12759 1 MVEVRIYTKT------NCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIR--TVPQIFVGDVHIG 72 (410)
T ss_pred CCcEEEEeCC------CCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCC--ccCeEEECCEEEe
Confidence 4579999999 4999999999999999999999999887544322222 3554 8999999999999
Q ss_pred ccHHHHhHHHhCcHHHHhccCc
Q 038258 339 GVDEVMKLEEEGKLEILFDRIP 360 (366)
Q Consensus 339 G~dEl~eL~EsGeL~~LLk~~~ 360 (366)
|++++.+ .+|+|.++|++++
T Consensus 73 Gf~~l~~--~~g~l~~~~~~~~ 92 (410)
T PRK12759 73 GYDNLMA--RAGEVIARVKGSS 92 (410)
T ss_pred CchHHHH--HhCCHHHHhcCCc
Confidence 9999987 8999999999865
No 27
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.51 E-value=4.5e-14 Score=118.23 Aligned_cols=89 Identities=21% Similarity=0.367 Sum_probs=73.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhC-------CCCccccEEEECCEEEeccH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALME-------SKQVKVPLVFVKGRLIGGVD 341 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG-------~~~~tVPqVFI~Gk~IGG~d 341 (366)
.|.||+++.+|.++.-..|.++..+|++++|+|+++||.+|++.|+.+++..| .+.+-+||||+|++|+|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 38899999999999999999999999999999999999999999999999885 23345689999999999999
Q ss_pred HHHhHHHhCcHHHHhc
Q 038258 342 EVMKLEEEGKLEILFD 357 (366)
Q Consensus 342 El~eL~EsGeL~~LLk 357 (366)
++.++.|+|+|.+.|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999886
No 28
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.39 E-value=2.3e-12 Score=102.89 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=58.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVD 341 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~d 341 (366)
+|+||+++ +||+|.+++.+|+++||+|+++||+.+++..++++. .|.. ++|+|++++.+|+|++
T Consensus 2 ~v~lYt~~------~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~--~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRN------DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFR--QLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCC------CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCC--CcCEEEECCEEEecCC
Confidence 69999999 499999999999999999999999999988888876 4765 8999999999999994
No 29
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.39 E-value=1e-12 Score=101.02 Aligned_cols=64 Identities=17% Similarity=0.368 Sum_probs=56.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCE-EEeccHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGR-LIGGVDE 342 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk-~IGG~dE 342 (366)
|+||+++ +||+|.+++++|+++||+|+++||..++..++++++. |.. ++|+||++|. +|||++.
T Consensus 1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~--~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFR--QVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCc--ccCEEEECCCcEEeccCH
Confidence 6899999 5999999999999999999999999999888888764 765 8999999775 9999954
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.17 E-value=2.6e-10 Score=84.13 Aligned_cols=66 Identities=27% Similarity=0.486 Sum_probs=59.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDE 342 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dE 342 (366)
+|+||+.++ |++|.+++.+|+.+++.|.++|++.++...+++.+..|.. ++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~--~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPW------CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQR--GVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCC------ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCC--cccEEEECCEEEeeCCH
Confidence 489999996 9999999999999999999999998888788888888865 89999999999988743
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.10 E-value=6.4e-10 Score=82.07 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=59.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDE 342 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dE 342 (366)
.|++|+..+ |++|.+++.+|+.++++|..+|++.+....+++.++.+.. ++|+|+++|+.|+|++.
T Consensus 1 ~v~l~~~~~------c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~--~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPD------CPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYR--SVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCC------ChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCc--ccCEEEECCEEEecCCH
Confidence 489999995 9999999999999999999999998888788888876654 89999999999999865
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.89 E-value=1.7e-08 Score=76.22 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=54.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHh-CCCCccccEEEE-CCEEEecc
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALM-ESKQVKVPLVFV-KGRLIGGV 340 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkelt-G~~~~tVPqVFI-~Gk~IGG~ 340 (366)
+|+||+.++ |++|.+++.+|+.++++|..+|++.++...+++.++. |.. ++|+|++ +|+.+...
T Consensus 1 ~v~ly~~~~------C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~--~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTW------CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNM--TVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCC------ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCc--eeCEEEECCCeEecCC
Confidence 589999996 9999999999999999999999998887778887775 554 8999977 66777654
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.70 E-value=4.2e-08 Score=73.35 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=48.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEe
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIG 338 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IG 338 (366)
+|++|++++ |++|..++.+|+.+ ++.|..+|++.+++ +.+..|.. ++|+|+|+|++++
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~--~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPT------CPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVM--SVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCC------CCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCc--ccCEEEECCEEEE
Confidence 589999995 99999999999875 69999999987754 44555754 8999999999876
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.61 E-value=3.3e-07 Score=71.14 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=58.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEEeccHHHHhHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLIGGVDEVMKLE 347 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~IGG~dEl~eL~ 347 (366)
++||+.+ .|++|.+++.+|+.+||+|+++++..+....+++.++.+.+ ++|++.. +|..+.+...+.+..
T Consensus 2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~--~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKV--QVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCC--cccEEEeCCCCeEEEcHHHHHHHH
Confidence 6899998 49999999999999999999999986665567888776654 8999977 367888888777755
Q ss_pred H
Q 038258 348 E 348 (366)
Q Consensus 348 E 348 (366)
+
T Consensus 74 ~ 74 (77)
T cd03041 74 F 74 (77)
T ss_pred H
Confidence 4
No 35
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.50 E-value=1e-06 Score=67.54 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=54.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEEC----CEEEeccHHHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVK----GRLIGGVDEVM 344 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~----Gk~IGG~dEl~ 344 (366)
+|.||+.. .||+|.+++.+|..+||+|++++++. ..+.++ +..+.. ++|+++++ |..|.....+.
T Consensus 1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~~--~vP~l~~~~~~~~~~l~eS~~I~ 69 (77)
T cd03040 1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSYK--KVPILRVESGGDGQQLVDSSVII 69 (77)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCCC--ccCEEEECCCCCccEEEcHHHHH
Confidence 57899998 59999999999999999999999853 334455 345544 89999987 78888887777
Q ss_pred hHHH
Q 038258 345 KLEE 348 (366)
Q Consensus 345 eL~E 348 (366)
+..+
T Consensus 70 ~yL~ 73 (77)
T cd03040 70 STLK 73 (77)
T ss_pred HHHH
Confidence 6554
No 36
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.47 E-value=5e-07 Score=64.62 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=55.1
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
.+|+.. .|++|.+++.+|+.++|+|+.+++..+.....++.+..+.. ++|.++++|..+++...+.+.
T Consensus 2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLG--KVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCC--CCCEEEECCEEEEcHHHHHHH
Confidence 578888 49999999999999999999999986543223566666655 899999999999988777654
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.41 E-value=1.5e-06 Score=65.80 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=54.0
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEEC-CEEEeccHHHHhHHH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVK-GRLIGGVDEVMKLEE 348 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~-Gk~IGG~dEl~eL~E 348 (366)
.+|+.. .||+|.+++.+|..+|++|+++.++.+... ...+..+.+ ++|+++++ |..+++...+.+..+
T Consensus 2 ~Ly~~~------~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~--~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYE------HCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAK--QVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecC------CCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCC--ccCEEEeCCCeEeehHHHHHHHHh
Confidence 578888 499999999999999999999998765321 223455554 89999997 899999998887654
No 38
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.25 E-value=5.1e-06 Score=66.45 Aligned_cols=75 Identities=11% Similarity=0.156 Sum_probs=59.6
Q ss_pred CCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEEC-CEEEeccHH
Q 038258 264 PGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVK-GRLIGGVDE 342 (366)
Q Consensus 264 p~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~-Gk~IGG~dE 342 (366)
|-..+.+.+|+.. .|++|.+++.+|+.+|++|+.++++... ..+++.+..+.+ ++|++.++ |..+.....
T Consensus 13 ~~~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~--~vPvL~~~~g~~l~eS~a 83 (89)
T cd03055 13 PPVPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQG--KVPALEIDEGKVVYESLI 83 (89)
T ss_pred CCCCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCC--CcCEEEECCCCEEECHHH
Confidence 3456789999988 5999999999999999999999987643 235566776655 89999998 888887776
Q ss_pred HHhHH
Q 038258 343 VMKLE 347 (366)
Q Consensus 343 l~eL~ 347 (366)
+.+..
T Consensus 84 I~~yL 88 (89)
T cd03055 84 ICEYL 88 (89)
T ss_pred HHHhh
Confidence 66543
No 39
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.18 E-value=8.4e-06 Score=61.28 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=54.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
+++|+.. .|++|.+++.+|+.+|++|++++++... ...++++....+ ++|++..+|..+.....+.+..+
T Consensus 1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~--~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYG--TVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCC--CCCEEEECCEEEEcHHHHHHHHH
Confidence 4689888 5999999999999999999999887542 235666665544 89999888888777766666543
No 40
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=7.8e-06 Score=69.47 Aligned_cols=91 Identities=13% Similarity=0.217 Sum_probs=78.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHH--------hCCCCccccEEEECCEEEecc
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRAL--------MESKQVKVPLVFVKGRLIGGV 340 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkel--------tG~~~~tVPqVFI~Gk~IGG~ 340 (366)
.|.+|+++-+|...+--.-..+..+|+...|.|.++||.+....+..+... .|. +..||||-+++|.|+|
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~Gn--plPPqifn~d~Y~Gdy 80 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGN--PLPPQIFNGDQYCGDY 80 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCC--CCCcccccCccccccH
Confidence 588999999888888888899999999999999999999887665555433 233 4789999999999999
Q ss_pred HHHHhHHHhCcHHHHhccCcc
Q 038258 341 DEVMKLEEEGKLEILFDRIPK 361 (366)
Q Consensus 341 dEl~eL~EsGeL~~LLk~~~~ 361 (366)
+.+.+..|+..|.+.|+-+|.
T Consensus 81 e~F~ea~E~ntl~eFL~lap~ 101 (108)
T KOG4023|consen 81 ELFFEAVEQNTLQEFLGLAPP 101 (108)
T ss_pred HHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999988775
No 41
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.08 E-value=4.5e-06 Score=70.12 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=40.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhC
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALME 321 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG 321 (366)
|.||+++ .|++|.+|+++|+++|++|+++|+..++..+++|.++.+
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 5799999 599999999999999999999999988776777776554
No 42
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.05 E-value=5.1e-06 Score=68.35 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=40.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCC
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMES 322 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~ 322 (366)
|+||+++ +|++|.+|+.+|+++||.|+++|+..++...++|.++++.
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 5799999 5999999999999999999999999877666777776643
No 43
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.03 E-value=2.1e-05 Score=59.82 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=52.2
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEEC-CEEEeccHHHHh
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVK-GRLIGGVDEVMK 345 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~-Gk~IGG~dEl~e 345 (366)
++|+..+ |++|.+++.+|..+|++|+.++++.... .+++.++.+.+ ++|++..+ |..+.....+.+
T Consensus 2 ~ly~~~~------~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~--~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRR------CPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKG--TVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCC------CcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCC--CCCEEEECCCcEEecHHHHHH
Confidence 6888885 9999999999999999999999876432 35677776655 89999996 888776655544
No 44
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.02 E-value=1.5e-05 Score=59.40 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=52.1
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEE-CCEEEeccHHHHhH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFV-KGRLIGGVDEVMKL 346 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI-~Gk~IGG~dEl~eL 346 (366)
+.||+.+ .|++|.+++.+|..+|++|+.++++... ...+++.+..+.+ ++|++.+ +|..+.....+.+.
T Consensus 1 ~~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 1 MKLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAG--TVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCC--CCCEEEeCCCCEEecHHHHHHH
Confidence 3688888 4999999999999999999888887532 2345677776655 8999997 66666665555543
No 45
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.01 E-value=2.4e-05 Score=60.26 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=57.7
Q ss_pred EEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHHh
Q 038258 272 IYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEEE 349 (366)
Q Consensus 272 IYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~Es 349 (366)
+|... .||+|.+++.+|+.+||+|+.+++..... ..++.++.+.. ++|++..+|..|.+...+.+..++
T Consensus 1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~--~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKG--KVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTS--BSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccc--cceEEEECCEEEeCHHHHHHHHHH
Confidence 57777 49999999999999999999999985543 57777777655 899999999999999888776553
No 46
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.99 E-value=3.9e-05 Score=58.57 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=42.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH----CC--CcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES----HQ--VQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGR 335 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes----~g--V~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk 335 (366)
.|+||+.+| |++|..++.+|+. ++ +.+..+|+..+++. .+..|-. ++|+++++|+
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~--~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPT------CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEYGIM--AVPAIVINGD 62 (82)
T ss_pred EEEEEECCC------CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHcCCc--cCCEEEECCE
Confidence 488999996 9999999999864 34 66788888766543 3345654 7999999996
No 47
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.98 E-value=6.4e-05 Score=59.66 Aligned_cols=53 Identities=23% Similarity=0.443 Sum_probs=43.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHC----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECC
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESH----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKG 334 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~G 334 (366)
+|++|+++ +|+-|..|+.+|+.. ++.+..+||+.|+. +.+.+|. .+|++.++|
T Consensus 1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~---~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY---RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT---STSEEEETT
T ss_pred CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC---CCCEEEEcC
Confidence 58999999 699999999999964 47799999997765 5667776 599999998
No 48
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.95 E-value=3.4e-05 Score=58.23 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=54.1
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCC--HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMD--SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D--~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
+.+|+.. .|++|.+++.+|+.+|++|+.++++.. ....+++.+....+ ++|.+.++|..+.....+.+.
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQH--TVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred CEEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCC--CCCEEEECCEEEEcHHHHHHH
Confidence 3688888 599999999999999999999888743 23456777776554 799999998877766666554
No 49
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.93 E-value=2.1e-05 Score=68.28 Aligned_cols=44 Identities=23% Similarity=0.481 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRAL 319 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkel 319 (366)
|+||+++ .|++|.+|+++|+++||.|+++|+..++..+++|.++
T Consensus 2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~ 45 (131)
T PRK01655 2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQI 45 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHH
Confidence 7899999 5999999999999999999999999887656665544
No 50
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.86 E-value=7e-05 Score=55.95 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=53.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCC--HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHh
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMD--SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMK 345 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D--~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~e 345 (366)
+.+|+.. .|++|.+++.+|..+|++|++++++.. ....+++.+....+ ++|.+..+|..|.....+.+
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 1 MKLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNG--EVPVLELDGRVLAESNAILV 70 (73)
T ss_pred CEEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCC--CCCEEEECCEEEEcHHHHHH
Confidence 3678888 499999999999999999999998753 22346666665544 79999999988876666554
No 51
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.81 E-value=4.3e-05 Score=64.46 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=39.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHh
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALM 320 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkelt 320 (366)
|.||+.+ +|++|.+|+++|+++||.|+++|+..++..+++|.++.
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~ 45 (117)
T TIGR01617 1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL 45 (117)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence 5799999 59999999999999999999999998877777776554
No 52
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.77 E-value=5.8e-05 Score=63.60 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHh
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALM 320 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkelt 320 (366)
|.||+.+ +|++|.+|+++|+.+||.|+++|+..++.-+++|.+..
T Consensus 2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~ 46 (115)
T cd03032 2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL 46 (115)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence 7899999 59999999999999999999999988765556655543
No 53
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.68 E-value=0.00015 Score=58.88 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=47.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEe
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIG 338 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IG 338 (366)
+.-.|.+|+.++ |++|..++.+++.. +|.|..+|++..++. .+.+|-. .+|.++|||+.++
T Consensus 12 ~pv~i~~F~~~~------C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~----a~~~~V~--~vPt~vidG~~~~ 77 (89)
T cd03026 12 GPINFETYVSLS------CHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDE----VEERGIM--SVPAIFLNGELFG 77 (89)
T ss_pred CCEEEEEEECCC------CCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHH----HHHcCCc--cCCEEEECCEEEE
Confidence 444799999985 99999988888754 699999999866543 3344654 7999999998765
No 54
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.67 E-value=0.00032 Score=53.27 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=49.0
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 279 GIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 279 GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
+..-.|++|.+++.+|+.+||+|+.++++... ....+ ++|++.++|+.+.+...+.+..+
T Consensus 11 ~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g--~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 11 GLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTG--KLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCc--ccCEEEECCEEEcCHHHHHHHHh
Confidence 44557999999999999999999999997542 23333 79999999999999988877654
No 55
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.64 E-value=8.7e-05 Score=64.73 Aligned_cols=43 Identities=28% Similarity=0.514 Sum_probs=36.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRA 318 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELke 318 (366)
|+||+.+ .|+.|.+|+++|+++||.|+++|+..++.-+++|.+
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~ 44 (132)
T PRK13344 2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILA 44 (132)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHH
Confidence 7899999 599999999999999999999999877544444433
No 56
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.62 E-value=9.9e-05 Score=64.32 Aligned_cols=44 Identities=32% Similarity=0.581 Sum_probs=37.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRAL 319 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkel 319 (366)
|+||+.+ .|+.|.+|+++|+++||.|+++|+..++.-+++|.++
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~ 45 (131)
T PRK12559 2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSI 45 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHH
Confidence 7899999 5999999999999999999999998875444444433
No 57
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.59 E-value=0.00062 Score=56.42 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=58.7
Q ss_pred CcEEEEEecCCC--CCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHh
Q 038258 268 NAVVIYTTTLRG--IRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMK 345 (366)
Q Consensus 268 ~kVVIYTkSl~G--iRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~e 345 (366)
..+.+|.+...+ ....|+||++++..|..+||+|+.++|++... -+.+.++.-.+ .+|++..+|..|.....+.+
T Consensus 4 p~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g--~vPvL~~~~~~i~eS~~I~e 80 (91)
T cd03061 4 PEIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGT--QPPFLLYNGEVKTDNNKIEE 80 (91)
T ss_pred CcEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCC--CCCEEEECCEEecCHHHHHH
Confidence 356667665432 23579999999999999999999998876532 24566665444 79999999999988888877
Q ss_pred HHHh
Q 038258 346 LEEE 349 (366)
Q Consensus 346 L~Es 349 (366)
+.++
T Consensus 81 YLde 84 (91)
T cd03061 81 FLEE 84 (91)
T ss_pred HHHH
Confidence 6553
No 58
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.57 E-value=0.00023 Score=70.48 Aligned_cols=84 Identities=20% Similarity=0.404 Sum_probs=63.3
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
-++++|--. |||||++||.+|+=+||+|..+.|+ +-.|++++ .+..+ .||.+.|.|+.+-...-|..+.
T Consensus 89 L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~Ssyk--KVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 89 LDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WSSYK--KVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred ceEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-ccccc--cccEEEeccceechhHHHHHHH
Confidence 589999988 7999999999999999999999995 66677774 22333 7999999988765554443332
Q ss_pred ------HhCcHHHHhccCccc
Q 038258 348 ------EEGKLEILFDRIPKA 362 (366)
Q Consensus 348 ------EsGeL~~LLk~~~~~ 362 (366)
..-.|+++++..|+.
T Consensus 158 aTyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 158 ATYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred HHHhccCCCCHHHHHHhcccc
Confidence 224678888877753
No 59
>PHA02125 thioredoxin-like protein
Probab=97.54 E-value=0.00033 Score=54.40 Aligned_cols=55 Identities=13% Similarity=0.324 Sum_probs=39.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEE
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLI 337 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~I 337 (366)
|++|+.+| |++|..++.+|+...+.|..+|.+.+. ++.+..+-. .+|++. +|+.+
T Consensus 2 iv~f~a~w------C~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~v~--~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEW------CANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHHIR--SLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcCCc--eeCeEE-CCEEE
Confidence 88999997 999999999998765555445544433 455555654 799987 66543
No 60
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.53 E-value=0.00013 Score=61.27 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHh
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALM 320 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkelt 320 (366)
|+||+.+ .|..|.+|+++|+++||.|+++|+..++--.++|.+++
T Consensus 1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l 45 (105)
T cd03035 1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWL 45 (105)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHH
Confidence 6799999 59999999999999999999999998865555555554
No 61
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.47 E-value=0.00071 Score=51.40 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=55.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
+.+|+.. .|++|.+++.+|..+|++|+.+.++... ...+++.+....+ ++|.+..+|..|.....+.+..
T Consensus 2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~--~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFG--QIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCC--CCCEEEECCEEEEcHHHHHHHH
Confidence 6788888 4999999999999999999998887542 2235666666554 8999998998888777777655
Q ss_pred H
Q 038258 348 E 348 (366)
Q Consensus 348 E 348 (366)
+
T Consensus 74 ~ 74 (76)
T cd03053 74 A 74 (76)
T ss_pred h
Confidence 4
No 62
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.44 E-value=0.00071 Score=51.51 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=51.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
+.+|+.. .|++|.+++.+|..+|++|++++++... ...++.++... ..++|.+..+|..+.....+.+..+
T Consensus 1 ~~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~p~-~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLASNPV-HKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECC------CCchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHHhCCC-CCCCCEEEECCEEeehHHHHHHHHH
Confidence 3578777 4999999999999999999998886541 12445555432 0279999988887777766666543
No 63
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.44 E-value=0.00021 Score=60.84 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=37.7
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRAL 319 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkel 319 (366)
.|+||+.+ .|..|.+|+++|+++||.|+++|+..++--+++|+++
T Consensus 1 ~i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~ 45 (113)
T cd03033 1 DIIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPF 45 (113)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHH
Confidence 37899999 6999999999999999999999999875444555444
No 64
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.41 E-value=0.00053 Score=53.70 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCCCChhHHHH----HHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEE
Q 038258 270 VVIYTTTLRGIRKTFEDCNKV----RSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLI 337 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~ka----K~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~I 337 (366)
|.+|+ +| |+.|..+ +.+++++++.+..++|+. .. ++.+ .|-. ++|.|+|||+.+
T Consensus 3 i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-~~---~a~~-~~v~--~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTD-MN---EILE-AGVT--ATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCC-HH---HHHH-cCCC--cCCEEEECCEEE
Confidence 66776 75 9999999 668888999999999982 22 2323 3544 899999999664
No 65
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.33 E-value=0.00074 Score=52.37 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=53.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
+++|... .|++|.+++.+|..+|++|+.++++... ....++.++...+ ++|.+..||..+.....+.+.
T Consensus 1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g--~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTG--EVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCC--CCCEEEECCEEEEcHHHHHHH
Confidence 3678887 5999999999999999999998887532 2235677776655 899999999888777666554
No 66
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.22 E-value=0.002 Score=49.41 Aligned_cols=70 Identities=9% Similarity=0.119 Sum_probs=54.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
+++|... .|+.|.+++.+|..+|++|+.+.++.+ ...+++......+ ++|.+..+|..|.....+.+...
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~~--~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTYFP------VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLFG--QLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred cEEEEeC------CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCCC--CCCEEEECCEEEEcHHHHHHHHh
Confidence 5778777 389999999999999999999998753 3344565554433 79999999998887777766543
No 67
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.20 E-value=0.0012 Score=49.29 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=51.0
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
.+|+.. .|+.|.+++.+|..+||+|+.+.++... ...+++.+....+ ++|++..+|..+.....+.+.
T Consensus 2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQG--LVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCC--CCCEEEECCEEEEcHHHHHHH
Confidence 567666 3788999999999999999998887532 2235666665544 899999999888766666554
No 68
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.18 E-value=0.0019 Score=48.92 Aligned_cols=68 Identities=9% Similarity=0.185 Sum_probs=50.2
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
++|... .|+.|.+++.+|+.+|++|+.++++.......++......+ ++|.+..+|..+.....+.+.
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~--~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFG--QLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCC--CCCEEEECCEEEEecHHHHHH
Confidence 577776 48899999999999999999999875432223344443333 899999999888877666654
No 69
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.14 E-value=0.0014 Score=49.57 Aligned_cols=67 Identities=15% Similarity=0.040 Sum_probs=49.2
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHH--CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE-CCEEEeccHHHHhH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIES--HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV-KGRLIGGVDEVMKL 346 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes--~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI-~Gk~IGG~dEl~eL 346 (366)
.+|+.. .|++|.+++.+|.. +|++|+.+.++.. ....++.+....+ ++|.+.. +|..+.....+.+.
T Consensus 2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~--~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLG--KIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCC--CCCEEEECCCCEEECHHHHHhh
Confidence 577777 59999999999999 8999999988743 1224555555544 8999975 77777766665544
No 70
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.07 E-value=0.0035 Score=48.92 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=34.2
Q ss_pred CChhHHHHHHH----HHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEE
Q 038258 283 TFEDCNKVRSI----IESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRL 336 (366)
Q Consensus 283 tCp~C~kaK~l----Les~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~ 336 (366)
+|++|..+.++ +..+++.++.+|+ .+. +++ ..+|-. ++|.++|||+.
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~---~~~-~~ygv~--~vPalvIng~~ 59 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDI-EDF---EEI-EKYGVM--SVPALVINGKV 59 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH---HHH-HHTT-S--SSSEEEETTEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH---HHH-HHcCCC--CCCEEEECCEE
Confidence 49999876664 4578999999998 342 334 445654 89999999974
No 71
>PRK10387 glutaredoxin 2; Provisional
Probab=97.02 E-value=0.0029 Score=56.48 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=52.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE-EECCEEEeccHHHHhHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLV-FVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV-FI~Gk~IGG~dEl~eL~E 348 (366)
+.+|+.. .||+|.+++.+|..+||+|+.+++...... .. .+..+.. +||++ ..+|..|.....|.+..+
T Consensus 1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~--~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQK--QVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCc--ccceEEecCCeEecCHHHHHHHHH
Confidence 4688877 499999999999999999999998654322 22 2444433 79999 568888888888877655
Q ss_pred h
Q 038258 349 E 349 (366)
Q Consensus 349 s 349 (366)
+
T Consensus 71 ~ 71 (210)
T PRK10387 71 E 71 (210)
T ss_pred H
Confidence 4
No 72
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.00 E-value=0.0055 Score=47.15 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=51.4
Q ss_pred EEEEEecCC-CCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 270 VVIYTTTLR-GIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 270 VVIYTkSl~-GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
+++|....+ +...-|++|.+++.+|+.+|++|+.+.++.. +....+ ++|++..+|+.+.....+.+..+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~p~g--~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRSPKG--KLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCCCCC--CCCEEEECCEEEcCHHHHHHHHH
Confidence 566766632 2233489999999999999999999888641 233333 79999999999988888777554
No 73
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.98 E-value=0.0026 Score=58.06 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=51.7
Q ss_pred EEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEE-ECCEEEeccHHHHhHHHh
Q 038258 272 IYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVF-VKGRLIGGVDEVMKLEEE 349 (366)
Q Consensus 272 IYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVF-I~Gk~IGG~dEl~eL~Es 349 (366)
+|+.. .||+|.+|+.+|..+|++|+.+++..+.. .. ..+..+.. ++|++. .||..+.+...+.+..++
T Consensus 2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~np~g--~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMIGAK--QVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhcCCC--CcceEEeeCCeEeccHHHHHHHHHH
Confidence 57766 59999999999999999999998865432 12 23444433 799997 788999998888776553
No 74
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.96 E-value=0.0032 Score=52.69 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=40.6
Q ss_pred CCCcEEEE-EecCCCCCCCChhHHHHHHHHHHCC-----CcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIY-TTTLRGIRKTFEDCNKVRSIIESHQ-----VQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIY-TkSl~GiRktCp~C~kaK~lLes~g-----V~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
....|+|| +.+| |++|..++.+|++.. +.+..+|++.++ ++.+.+|-. ++|.+++
T Consensus 21 ~~~~vvv~f~a~w------C~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v~--~vPt~~i 81 (113)
T cd02975 21 NPVDLVVFSSKEG------CQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGVE--RVPTTIF 81 (113)
T ss_pred CCeEEEEEeCCCC------CCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCCC--cCCEEEE
Confidence 34456666 5676 999999999998653 678899988665 345555754 8999988
No 75
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.95 E-value=0.0042 Score=48.02 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=52.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCC--HHHHHHHHHHhCCCCccccEEEEC---CEEEeccHHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMD--SGFKEELRALMESKQVKVPLVFVK---GRLIGGVDEVM 344 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D--~e~reELkeltG~~~~tVPqVFI~---Gk~IGG~dEl~ 344 (366)
+.+|..+ +++|.+++.+|+.+|++|+.+.++.. ....+++.+..... ++|.+..+ |..|.....+.
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~g~~l~eS~aI~ 72 (81)
T cd03048 2 ITLYTHG-------TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNG--RIPAIVDHNGTPLTVFESGAIL 72 (81)
T ss_pred eEEEeCC-------CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCC--CCCEEEeCCCCceEEEcHHHHH
Confidence 6788876 49999999999999999988877643 23346676665544 79999887 77777666666
Q ss_pred hHHH
Q 038258 345 KLEE 348 (366)
Q Consensus 345 eL~E 348 (366)
+..+
T Consensus 73 ~yL~ 76 (81)
T cd03048 73 LYLA 76 (81)
T ss_pred HHHH
Confidence 6543
No 76
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.86 E-value=0.0033 Score=49.15 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEEC-CEEEeccHHHHhHHH
Q 038258 280 IRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVK-GRLIGGVDEVMKLEE 348 (366)
Q Consensus 280 iRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~-Gk~IGG~dEl~eL~E 348 (366)
.+.-|++|.+++.+|..+|++|+.+.++... ....++ +..+.+ ++|.+..+ |..|.+...+.+..+
T Consensus 12 ~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~--~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 12 VRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFY--TVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCc--eeCeEEECCCCEEeCHHHHHHHHH
Confidence 4556999999999999999999988876432 222333 333433 79999888 888888887777654
No 77
>PRK10026 arsenate reductase; Provisional
Probab=96.81 E-value=0.0022 Score=57.21 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHH
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRAL 319 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkel 319 (366)
|..|.||+.+ .|.-|.+|+++|+++|+.|+++|+..++--.++|..+
T Consensus 1 m~~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~ 47 (141)
T PRK10026 1 MSNITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKL 47 (141)
T ss_pred CCEEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHH
Confidence 3568999999 6999999999999999999999998875444555444
No 78
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.002 Score=55.53 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=39.2
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHh
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALM 320 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkelt 320 (366)
.|+||..+ .|.-|++|+++|+.+||.|.++|+..++--+++|.++.
T Consensus 2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 48999999 59999999999999999999999998765556665543
No 79
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.79 E-value=0.0072 Score=48.39 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=43.3
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHH------CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIES------HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes------~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
+..-+++|+.+| |+.|..+...|+. .++.+..+|++.++++ .+..+-. .+|.+++ +|+.+
T Consensus 13 ~~~vlv~f~a~~------C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~~v~--~vPt~~i~~~g~~v 80 (97)
T cd02949 13 DRLILVLYTSPT------CGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAAGIM--GTPTVQFFKDKELV 80 (97)
T ss_pred CCeEEEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHCCCe--eccEEEEEECCeEE
Confidence 344566777775 9999999988876 4578899999877654 3334544 7898865 77665
Q ss_pred e
Q 038258 338 G 338 (366)
Q Consensus 338 G 338 (366)
+
T Consensus 81 ~ 81 (97)
T cd02949 81 K 81 (97)
T ss_pred E
Confidence 3
No 80
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.76 E-value=0.0023 Score=53.90 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=35.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELR 317 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELk 317 (366)
|+||+.+ +|.-|.+|+++|++++++|+++|+..++--.++|.
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~ 42 (112)
T cd03034 1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELR 42 (112)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHH
Confidence 5799999 69999999999999999999999987753334433
No 81
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.73 E-value=0.0025 Score=53.98 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=37.1
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHh
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALM 320 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkelt 320 (366)
|.||+.+ +|.-|.+|+.+|+++|+.|+++|+..++--.++|.++.
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l 45 (114)
T TIGR00014 1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF 45 (114)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence 5799999 69999999999999999999999987754445554443
No 82
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.68 E-value=0.0069 Score=40.59 Aligned_cols=56 Identities=21% Similarity=0.386 Sum_probs=41.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHH-----HCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECC
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIE-----SHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKG 334 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLe-----s~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~G 334 (366)
|++|..++ |++|.++...|+ ..++.+..+|+.......+.+. ..+. ..+|++++.+
T Consensus 1 l~~~~~~~------c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPW------CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELK-RYGV--GGVPTLVVFG 61 (69)
T ss_pred CEEEECCC------ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHH-hCCC--ccccEEEEEe
Confidence 45677774 999999999999 6789999999988765444322 2233 3789998765
No 83
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.63 E-value=0.009 Score=46.01 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH-HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 278 RGIRKTFEDCNKVRSIIESHQVQTLERDISMDS-GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 278 ~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~-e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
.|.+..|++|.+++-+|..+|++|+.+.++... ...+++++....+ ++|.+..+|..+.....+.+.
T Consensus 4 ~~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g--~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 4 IGNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTG--KVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred EcCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCC--cCCEEEECCEEEEcHHHHHHH
Confidence 466778999999999999999999998887542 2235666665444 799999999887766665543
No 84
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.61 E-value=0.013 Score=43.60 Aligned_cols=58 Identities=17% Similarity=0.408 Sum_probs=42.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH-----CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEEe
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES-----HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLIG 338 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes-----~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~IG 338 (366)
-+++|+.++ |++|..+...|++ .++.+..+|++.+..+.+. .+-. .+|++++ +|+.++
T Consensus 13 ~ll~~~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~v~--~~P~~~~~~~g~~~~ 77 (93)
T cd02947 13 VVVDFWAPW------CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----YGVR--SIPTFLFFKNGKEVD 77 (93)
T ss_pred EEEEEECCC------ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----cCcc--cccEEEEEECCEEEE
Confidence 466666664 9999999999987 7888999999876554333 3543 7899876 787443
No 85
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.60 E-value=0.0037 Score=54.43 Aligned_cols=36 Identities=8% Similarity=0.242 Sum_probs=33.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS 310 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~ 310 (366)
.|+||..+ .|.-|++|+++|+++||+|+++|+..++
T Consensus 2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 58899999 6999999999999999999999998764
No 86
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0071 Score=49.65 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=45.3
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHH----------hCCCCccccEEEE-CCEEEec
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRAL----------MESKQVKVPLVFV-KGRLIGG 339 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkel----------tG~~~~tVPqVFI-~Gk~IGG 339 (366)
++|... .||+|..+...|++.+|.|+++||...-....++..+ -+.+-..+|.+.+ ||+.|=|
T Consensus 5 ~lfgsn------~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSN------LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccc------cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 677777 4999999999999999999999998653222221111 1112257899988 5566554
Q ss_pred cHHHH
Q 038258 340 VDEVM 344 (366)
Q Consensus 340 ~dEl~ 344 (366)
+|+.
T Consensus 79 -~Dl~ 82 (85)
T COG4545 79 -DDLS 82 (85)
T ss_pred -chhh
Confidence 4443
No 87
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.58 E-value=0.013 Score=44.82 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=51.2
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
.+|... .++.|.+++.+|..+|++|+.+.++... ...+++.+....+ ++|.+..+|..+.....+.+..
T Consensus 2 ~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~--~vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 2 KLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFG--KVPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred EEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCC--CCCEEEECCEEEEcHHHHHHHH
Confidence 578877 4899999999999999999988887432 2234566665544 7999988887776666655543
No 88
>PRK10853 putative reductase; Provisional
Probab=96.56 E-value=0.0034 Score=53.89 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=37.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHh
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALM 320 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkelt 320 (366)
|+||+.+ .|.-|.+|+++|+++||.|+++|+-.++--.++|.+++
T Consensus 2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 7899999 69999999999999999999999987754445554443
No 89
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=96.51 E-value=0.015 Score=55.55 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=58.5
Q ss_pred cEEEEEecCCCCC--CCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 269 AVVIYTTTLRGIR--KTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 269 kVVIYTkSl~GiR--ktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
.|.+|.+.....+ ..||+|.+++.+|..+||+|+.+.|+.... .+++.++.-.+ +||++..+|..|.....|.+.
T Consensus 2 ~~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g--~vPvL~~~g~~l~ES~aI~eY 78 (236)
T TIGR00862 2 EIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGT--HPPFLTYNTEVKTDVNKIEEF 78 (236)
T ss_pred ceEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCC--CCCEEEECCEEeecHHHHHHH
Confidence 3566766632222 469999999999999999999988876532 35666665544 799999999999888888776
Q ss_pred HHh
Q 038258 347 EEE 349 (366)
Q Consensus 347 ~Es 349 (366)
.++
T Consensus 79 L~e 81 (236)
T TIGR00862 79 LEE 81 (236)
T ss_pred HHH
Confidence 653
No 90
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.48 E-value=0.011 Score=53.65 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=54.5
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
...+.+|+.. .|++|.+++-+|..+||+|+.+.|+.. ...+++.++.-.+ +||++..+|..|--...|.+.
T Consensus 8 ~~~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g--~VPvL~~~g~~l~ES~AIl~Y 78 (211)
T PRK09481 8 RSVMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQ--SVPTLVDRELTLYESRIIMEY 78 (211)
T ss_pred CCeeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCC--CCCEEEECCEEeeCHHHHHHH
Confidence 3458899988 499999999999999999999999753 2234666665443 799999999877666666554
No 91
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.47 E-value=0.02 Score=49.00 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHH----HCCCcEEEEEcCCCH--H-----HHHHHHHHhCC--CCccccEEEE-
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIE----SHQVQTLERDISMDS--G-----FKEELRALMES--KQVKVPLVFV- 332 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s~gV~y~ErDVs~D~--e-----~reELkeltG~--~~~tVPqVFI- 332 (366)
...|+.|+.+| ||+|+.+.-.|. ..++++..+|++.+. + ...++.+..+. ....+|++++
T Consensus 24 ~~~iv~f~~~~------Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~ 97 (122)
T TIGR01295 24 ETATFFIGRKT------CPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHI 97 (122)
T ss_pred CcEEEEEECCC------ChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEE
Confidence 34467777775 999999666554 556889999998653 1 12344444432 1235898844
Q ss_pred -CCEEEecc
Q 038258 333 -KGRLIGGV 340 (366)
Q Consensus 333 -~Gk~IGG~ 340 (366)
+|+.++..
T Consensus 98 k~Gk~v~~~ 106 (122)
T TIGR01295 98 TDGKQVSVR 106 (122)
T ss_pred eCCeEEEEE
Confidence 89776544
No 92
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=96.47 E-value=0.0048 Score=47.29 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHCCCcEEEEEcCC--CH-HHHHHHHHHhCCCCccccEEEE-CCEEEeccHHHHhHHHh
Q 038258 284 FEDCNKVRSIIESHQVQTLERDISM--DS-GFKEELRALMESKQVKVPLVFV-KGRLIGGVDEVMKLEEE 349 (366)
Q Consensus 284 Cp~C~kaK~lLes~gV~y~ErDVs~--D~-e~reELkeltG~~~~tVPqVFI-~Gk~IGG~dEl~eL~Es 349 (366)
||||.+++-+|+.+|++|+..-+.. +. ...+++.++.+.. +||.+.. +|+.+.....+.++.++
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~--~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRG--KVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT---SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCe--EEEEEEECCCCEeeCHHHHHHHHhc
Confidence 9999999999999999998766632 22 2225677777765 8999998 89999988888776553
No 93
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.45 E-value=0.0079 Score=62.32 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=49.0
Q ss_pred hHHHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCC-----CcEEEEEcCCCHHHHHHHHHHhCCCCccc
Q 038258 253 SLLNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQ-----VQTLERDISMDSGFKEELRALMESKQVKV 327 (366)
Q Consensus 253 ~~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~g-----V~y~ErDVs~D~e~reELkeltG~~~~tV 327 (366)
..++.+++. .+.-.|.+|.+. +||||..|++++..+. |..+.+|....++ +.+.++.. +|
T Consensus 107 ~~~~~~~~~---~~~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~--~V 171 (515)
T TIGR03140 107 GIIDRIRRL---NGPLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGIQ--GV 171 (515)
T ss_pred HHHHHHHhc---CCCeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCCc--cc
Confidence 343555544 345579999999 6999999999998764 5556666654443 33444544 89
Q ss_pred cEEEECCEEEe
Q 038258 328 PLVFVKGRLIG 338 (366)
Q Consensus 328 PqVFI~Gk~IG 338 (366)
|++||||+.++
T Consensus 172 P~~~i~~~~~~ 182 (515)
T TIGR03140 172 PAVFLNGEEFH 182 (515)
T ss_pred CEEEECCcEEE
Confidence 99999997654
No 94
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.40 E-value=0.012 Score=54.19 Aligned_cols=70 Identities=7% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE
Q 038258 256 NVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLV 330 (366)
Q Consensus 256 ~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV 330 (366)
+.+++. .+.-.|++|+++| |++|..++.+|+.+ .|.+..+|++.+++. .+.+|-. ++|++
T Consensus 126 ~~l~~~---~~pv~I~~F~a~~------C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~----~~~~~V~--~vPtl 190 (215)
T TIGR02187 126 ELLQSL---DEPVRIEVFVTPT------CPYCPYAVLMAHKFALANDKILGEMIEANENPDL----AEKYGVM--SVPKI 190 (215)
T ss_pred HHHHhc---CCCcEEEEEECCC------CCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHH----HHHhCCc--cCCEE
Confidence 455543 2444677799996 99999999999865 466777888776543 3344654 89999
Q ss_pred EECC--E-EEecc
Q 038258 331 FVKG--R-LIGGV 340 (366)
Q Consensus 331 FI~G--k-~IGG~ 340 (366)
+|++ + ++|..
T Consensus 191 ~i~~~~~~~~G~~ 203 (215)
T TIGR02187 191 VINKGVEEFVGAY 203 (215)
T ss_pred EEecCCEEEECCC
Confidence 9864 3 45533
No 95
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.32 E-value=0.01 Score=61.48 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=49.8
Q ss_pred hHHHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccc
Q 038258 253 SLLNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKV 327 (366)
Q Consensus 253 ~~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tV 327 (366)
...+.+++. .+.-.|.+|.+. +||||..++++++++ .|..+.+|....+++ .+.++.. .|
T Consensus 106 ~~~~~i~~~---~~~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~----~~~~~v~--~V 170 (517)
T PRK15317 106 EVIEQIKAL---DGDFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDE----VEARNIM--AV 170 (517)
T ss_pred HHHHHHHhc---CCCeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhH----HHhcCCc--cc
Confidence 343455544 345579999999 699999999998765 455677777655543 3344544 89
Q ss_pred cEEEECCEEEe
Q 038258 328 PLVFVKGRLIG 338 (366)
Q Consensus 328 PqVFI~Gk~IG 338 (366)
|++||||+.+.
T Consensus 171 P~~~i~~~~~~ 181 (517)
T PRK15317 171 PTVFLNGEEFG 181 (517)
T ss_pred CEEEECCcEEE
Confidence 99999997654
No 96
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.29 E-value=0.016 Score=44.39 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=50.0
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH-HHHHHHHHHhCCCCccccEEEEC-CEEEeccHHHHhHH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS-GFKEELRALMESKQVKVPLVFVK-GRLIGGVDEVMKLE 347 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~-e~reELkeltG~~~~tVPqVFI~-Gk~IGG~dEl~eL~ 347 (366)
.+|+.. .|++|.+++-+|..+|++|+.++++... ...+++.++.-.+ ++|.+..+ |..+.....+.+..
T Consensus 2 ~Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~--~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLG--KVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCC--CCCEEEcCCCCEEeeHHHHHHHH
Confidence 367666 5899999999999999999999888642 2234566665444 89999984 77776555555443
No 97
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.19 E-value=0.017 Score=46.40 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHH-------HHC--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSII-------ESH--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lL-------es~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
+..-++.|+.+| |++|..+...+ +.+ ++.+..+|++.+.....++.+..+-. ++|++++
T Consensus 11 ~k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~--~~Pti~~ 78 (104)
T cd02953 11 GKPVFVDFTADW------CVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVF--GPPTYLF 78 (104)
T ss_pred CCeEEEEEEcch------hHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCC--CCCEEEE
Confidence 344567777776 99999876443 111 67788889887654445666666754 7998854
No 98
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.14 E-value=0.023 Score=43.39 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=49.1
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEEC-CEEEeccHHHHhHH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVK-GRLIGGVDEVMKLE 347 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~-Gk~IGG~dEl~eL~ 347 (366)
.+|+.+ .| .|.+++.+|..+|++|+.++++... ...+++.+....+ ++|.+..+ |..+.....+.+..
T Consensus 2 ~Ly~~~------~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~--~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 2 KLYYSP------GA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKG--QVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred EEEeCC------CC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCC--CCCEEEECCCcEEEcHHHHHHHH
Confidence 577766 24 4788999999999999988887542 2246677776554 89999887 77777666665543
No 99
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.02 E-value=0.028 Score=42.37 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=50.4
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
.+|+... +.|.+++.+|..+|++|+.+.++... ...+++.+..... ++|.+..+|..+.....+.+..+
T Consensus 2 ~l~~~~~-------~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~--~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-------SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLG--KVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-------CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCC--CCCEEEECCEEEEcHHHHHHHHH
Confidence 4676552 45889999999999999988887531 2235566655444 89999999998888777777654
No 100
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=95.86 E-value=0.043 Score=41.62 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHh
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMK 345 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~e 345 (366)
.+|... ..++|.+++.+|..+|++|+.++++... ...+++.+....+ ++|.+..+|..|..-..+.+
T Consensus 2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~--~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNG--RVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCC--CCCEEEECCEEEECHHHHHH
Confidence 577777 4789999999999999999988886432 2345666665544 89999888887765555444
No 101
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.84 E-value=0.023 Score=59.54 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=44.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH----HC-CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE----SH-QVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRL 336 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s~-gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~ 336 (366)
+.-.|.+|.++ +||+|..+.+.++ .. +|.++.+|+...+++ .+..+-. .||.+||||+.
T Consensus 476 ~~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~----~~~~~v~--~vP~~~i~~~~ 539 (555)
T TIGR03143 476 KPVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDL----KDEYGIM--SVPAIVVDDQQ 539 (555)
T ss_pred CCeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHH----HHhCCce--ecCEEEECCEE
Confidence 34478898888 5999988777665 34 799999999876543 3344644 89999999964
No 102
>PHA02278 thioredoxin-like protein
Probab=95.68 E-value=0.06 Score=44.97 Aligned_cols=65 Identities=17% Similarity=0.333 Sum_probs=43.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
+..-|+-|+++| |+.|+.+..+|+.. .+.+..+||+.+.....++.+..+-. ++|++++ ||+.+
T Consensus 14 ~~~vvV~F~A~W------CgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~--~iPT~i~fk~G~~v 85 (103)
T PHA02278 14 KKDVIVMITQDN------CGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIM--STPVLIGYKDGQLV 85 (103)
T ss_pred CCcEEEEEECCC------CHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCc--cccEEEEEECCEEE
Confidence 344566677776 99999888877543 35688889986532134455555644 7888844 88765
Q ss_pred e
Q 038258 338 G 338 (366)
Q Consensus 338 G 338 (366)
+
T Consensus 86 ~ 86 (103)
T PHA02278 86 K 86 (103)
T ss_pred E
Confidence 3
No 103
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.53 E-value=0.032 Score=46.52 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHH
Q 038258 283 TFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRAL 319 (366)
Q Consensus 283 tCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkel 319 (366)
.|.-|++|+++|+++|+.|.++|+..++--+++|.++
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~ 41 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELREL 41 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHH
Confidence 6999999999999999999999999875444444433
No 104
>PTZ00051 thioredoxin; Provisional
Probab=95.47 E-value=0.076 Score=41.77 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=40.1
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHH-----CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEEe
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIES-----HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLIG 338 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes-----~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~IG 338 (366)
.-++.|+.+| |+.|..+...|+. .++.|..+|++.... +.+..+-. .+|++++ +|+.++
T Consensus 20 ~vli~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~~v~--~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 20 LVIVDFYAEW------CGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKENIT--SMPTFKVFKNGSVVD 85 (98)
T ss_pred eEEEEEECCC------CHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHCCCc--eeeEEEEEeCCeEEE
Confidence 4466677775 9999999888876 368888888875443 33444544 7887744 776554
No 105
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.39 E-value=0.057 Score=46.58 Aligned_cols=58 Identities=14% Similarity=0.223 Sum_probs=42.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHC-----C-CcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEEe
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESH-----Q-VQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLIG 338 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~-----g-V~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~IG 338 (366)
-|+-|+.+| |+.|+.+..+|+.+ + +.|..+|++.++++ .+..|-. ++|++++ +|+.++
T Consensus 17 vVV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~l----a~~~~V~--~iPTf~~fk~G~~v~ 82 (114)
T cd02954 17 VVIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDF----NKMYELY--DPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHH----HHHcCCC--CCCEEEEEECCEEEE
Confidence 466688887 99999998888643 2 56889999887654 4444654 7898844 998765
No 106
>PRK15113 glutathione S-transferase; Provisional
Probab=95.34 E-value=0.08 Score=48.13 Aligned_cols=73 Identities=7% Similarity=0.103 Sum_probs=53.0
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCC--HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHh
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMD--SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMK 345 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D--~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~e 345 (366)
..+++|+... ..|++|.+++-+|..+||+|+.+.++.. +...+++.++.-.+ +||++.++|..|--..-+.+
T Consensus 4 ~~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g--~VP~L~~~~~~l~ES~aI~~ 77 (214)
T PRK15113 4 PAITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTR--RVPTLQHDDFELSESSAIAE 77 (214)
T ss_pred CeEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCC--CCCEEEECCEEEecHHHHHH
Confidence 3578998651 1489999999999999999998888753 22335666665443 79999999877765555544
Q ss_pred H
Q 038258 346 L 346 (366)
Q Consensus 346 L 346 (366)
.
T Consensus 78 Y 78 (214)
T PRK15113 78 Y 78 (214)
T ss_pred H
Confidence 3
No 107
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.07 E-value=0.071 Score=44.07 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=43.8
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEEecc
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLIGGV 340 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~IGG~ 340 (366)
.-|+.|+.+| |+.|..+...|+.+ ++.|..+|++.. ++.+..+-. .+|.+ |-+|+.++-.
T Consensus 26 ~vvv~F~a~~------c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~--~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 26 RVVVHFYEPG------FPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIK--VLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEEEeCCC------CCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCC--cCCEEEEEECCEEEEEE
Confidence 3455677776 99999988888642 577888888643 555555654 78987 5599887655
Q ss_pred HHHHh
Q 038258 341 DEVMK 345 (366)
Q Consensus 341 dEl~e 345 (366)
.-...
T Consensus 93 ~G~~~ 97 (113)
T cd02957 93 VGFEE 97 (113)
T ss_pred ecHHH
Confidence 43333
No 108
>PRK09381 trxA thioredoxin; Provisional
Probab=95.02 E-value=0.099 Score=42.26 Aligned_cols=61 Identities=11% Similarity=0.299 Sum_probs=41.6
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHH----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIES----H--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes----~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
+..-|+.|+.+| |+.|..+...|+. + ++.+..+|++..+.. .+..+-+ ++|.+++ +|+.+
T Consensus 21 ~~~vvv~f~~~~------C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~--~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 21 DGAILVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIR--GIPTLLLFKNGEVA 88 (109)
T ss_pred CCeEEEEEECCC------CHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCCCC--cCCEEEEEeCCeEE
Confidence 444566777775 9999998877753 3 366788888766543 3334544 8998855 88776
Q ss_pred e
Q 038258 338 G 338 (366)
Q Consensus 338 G 338 (366)
+
T Consensus 89 ~ 89 (109)
T PRK09381 89 A 89 (109)
T ss_pred E
Confidence 4
No 109
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=94.98 E-value=0.13 Score=43.17 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=42.0
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEEecc
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLIGGV 340 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~IGG~ 340 (366)
.-|+.|+.+| |+.|..+...|+.+ ++.+..+|++..+.. .+..+-. .+|++ |-+|+.++-.
T Consensus 24 ~vvV~f~a~~------c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l----~~~~~v~--~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 24 RVVCHFYHPE------FFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFL----VEKLNIK--VLPTVILFKNGKTVDRI 91 (113)
T ss_pred cEEEEEECCC------CccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHH----HHHCCCc--cCCEEEEEECCEEEEEE
Confidence 3455566675 99999998888652 578999999877653 3444544 78887 4489766533
No 110
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=94.96 E-value=0.11 Score=41.94 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=40.6
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHH---------CCCcEEEEEcCCCHH----------------HHHHHHHHh
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIES---------HQVQTLERDISMDSG----------------FKEELRALM 320 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes---------~gV~y~ErDVs~D~e----------------~reELkelt 320 (366)
++..|++|+.++ |++|.++...+.. .++.+..+++..+.. ...++.+..
T Consensus 5 ~k~~v~~F~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (112)
T PF13098_consen 5 GKPIVVVFTDPW------CPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY 78 (112)
T ss_dssp SSEEEEEEE-TT-------HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT
T ss_pred CCEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc
Confidence 445677777774 9999988666652 135566666664431 123565666
Q ss_pred CCCCccccEEEE-C--CE---EEeccHHHHhH
Q 038258 321 ESKQVKVPLVFV-K--GR---LIGGVDEVMKL 346 (366)
Q Consensus 321 G~~~~tVPqVFI-~--Gk---~IGG~dEl~eL 346 (366)
|-. ..|.+++ + |+ .+-|+-.-.+|
T Consensus 79 ~v~--gtPt~~~~d~~G~~v~~~~G~~~~~~l 108 (112)
T PF13098_consen 79 GVN--GTPTIVFLDKDGKIVYRIPGYLSPEEL 108 (112)
T ss_dssp T----SSSEEEECTTTSCEEEEEESS--HHHH
T ss_pred CCC--ccCEEEEEcCCCCEEEEecCCCCHHHH
Confidence 654 7899865 4 66 45566444333
No 111
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.95 E-value=0.21 Score=38.61 Aligned_cols=58 Identities=14% Similarity=0.344 Sum_probs=39.0
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHH----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIES----H--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes----~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
.-|+.|+++| |++|..+...|+. + .+.|..+|++.+..+ .+..|-. .+|.+++ +|+.+
T Consensus 16 ~vvi~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~--~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 16 PVLVDFWAPW------CGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI----AAKYGIR--SIPTLLLFKNGKEV 81 (101)
T ss_pred cEEEEEECCC------CHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHcCCC--cCCEEEEEeCCcEe
Confidence 3455556664 9999988777754 2 377888888876544 3344654 7999866 77644
No 112
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.95 E-value=0.15 Score=39.59 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=40.8
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHH----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEEe
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIES----H--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLIG 338 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes----~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~IG 338 (366)
..-|+.|+++| |+.|..++..|.+ + +|.|..+|.+.+.. +.+..+-. .+|++++ +|+.+.
T Consensus 18 ~~vvv~f~~~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~--~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 18 KPVVVYFYAPW------CPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKYGVK--SVPTIIFFKNGKEVK 85 (103)
T ss_dssp SEEEEEEESTT------SHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHTTCS--SSSEEEEEETTEEEE
T ss_pred CCEEEEEeCCC------CCccccccceecccccccccccccchhhhhccch----hhhccCCC--CCCEEEEEECCcEEE
Confidence 34556666664 9999999988753 3 58888999986644 34444644 7899844 776553
No 113
>PLN02378 glutathione S-transferase DHAR1
Probab=94.85 E-value=0.084 Score=48.26 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=47.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 282 KTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 282 ktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
..||+|.+|+-+|+.+|++|+.+.|+.... .+++.++.-.+ +||.+..+|..|.-...+.+..+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~G--~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQG--KVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCCC--CCCEEEECCEEecCHHHHHHHHH
Confidence 369999999999999999998887765321 23566665444 89999999987776666665543
No 114
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=94.80 E-value=0.087 Score=50.82 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 283 TFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 283 tCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
.||+|.+++-+|+.+||+|+.+.|+.... -+++.++.-.+ ++|.+..+|..|....-+.+..+
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~~-~~~fl~iNP~G--kVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTNK-PEWFLKISPEG--KVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCcC-CHHHHhhCCCC--CCCEEEECCEEEecHHHHHHHHH
Confidence 59999999999999999999887765421 23455554333 79999999988876666666543
No 115
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.60 E-value=0.15 Score=47.11 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=42.7
Q ss_pred CCCcEEEEEe---cCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCE
Q 038258 266 GENAVVIYTT---TLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGR 335 (366)
Q Consensus 266 ~~~kVVIYTk---Sl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk 335 (366)
+.-.|++|+. +| |++|..+..+|++. ++.+..+|++.|.. .++.+..|-. .+|.+.+ +|+
T Consensus 19 ~~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~~V~--~~Pt~~~f~~g~ 88 (215)
T TIGR02187 19 NPVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKYGVE--RVPTTIILEEGK 88 (215)
T ss_pred CCeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHcCCC--ccCEEEEEeCCe
Confidence 4556888988 76 99999999998754 35566788875532 3455555654 7899866 654
Q ss_pred EE
Q 038258 336 LI 337 (366)
Q Consensus 336 ~I 337 (366)
.+
T Consensus 89 ~~ 90 (215)
T TIGR02187 89 DG 90 (215)
T ss_pred ee
Confidence 44
No 116
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=94.57 E-value=0.19 Score=40.18 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=37.2
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHH----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CC
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIES----H--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KG 334 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes----~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~G 334 (366)
.-++.|+.+| |+.|..+...++. + .+.+..+|.+.+.. +.+..|-+ .+|++++ +|
T Consensus 21 ~v~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~--~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAPW------CGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANIR--AYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCCC--cccEEEEEcCC
Confidence 4567777886 9999988777653 2 36778888876544 33444644 7898844 65
No 117
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.55 E-value=0.2 Score=39.24 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=38.7
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHH------CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEE
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIES------HQVQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLI 337 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes------~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~I 337 (366)
..-++.|+.+| |+.|.++...|+. ..+.+..+|++..++ +.+..+-. .+|.+ |.+|+.+
T Consensus 15 ~~v~v~f~~~~------C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~~i~--~~Pt~~~~~~g~~~ 81 (97)
T cd02984 15 KLLVLHFWAPW------AEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKFEIT--AVPTFVFFRNGTIV 81 (97)
T ss_pred CEEEEEEECCC------CHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhcCCc--cccEEEEEECCEEE
Confidence 44567777776 9999999888875 246667777665443 33444544 78976 4477654
No 118
>PLN02473 glutathione S-transferase
Probab=94.51 E-value=0.14 Score=45.97 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=51.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCC--HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMD--SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D--~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
+.+|... ++++|.+++-+|..+||+|+.+.++.. .....++..+.-.+ +||.+..+|..|....-+.+..
T Consensus 3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g--~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFG--QVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCC--CCCeEEECCEEEEehHHHHHHH
Confidence 5688777 589999999999999999988866533 12234454554333 7999999998888777777644
No 119
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=94.44 E-value=0.26 Score=40.15 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=42.4
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
+..-|+-|+.+| |+.|..+...|+.+ ++.|..+|++.+... .++.+..+-. .+|++++ +|+.+
T Consensus 15 ~k~vvv~F~a~w------C~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V~--~~Pt~~~~~~G~~v 84 (103)
T cd02985 15 GRLVVLEFALKH------SGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKII--EVPHFLFYKDGEKI 84 (103)
T ss_pred CCEEEEEEECCC------CHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCCC--cCCEEEEEeCCeEE
Confidence 444566677776 99999888877653 577888888766432 3455555543 7897744 88654
No 120
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.43 E-value=0.21 Score=47.25 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHC---CCcEEEE
Q 038258 264 PGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESH---QVQTLER 304 (366)
Q Consensus 264 p~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~---gV~y~Er 304 (366)
+.++..|++|+-. .||||+++...|..+ +|.+..+
T Consensus 105 ~~~k~~I~vFtDp------~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 105 PQEKHVITVFTDI------TCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCCCEEEEEEECC------CChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3466789999988 699999998888775 4554443
No 121
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.38 E-value=0.17 Score=42.02 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=36.4
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHH---------HCCCcEEEEEcCCCHHH---------HHHHHHHhCCCCcccc
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIE---------SHQVQTLERDISMDSGF---------KEELRALMESKQVKVP 328 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLe---------s~gV~y~ErDVs~D~e~---------reELkeltG~~~~tVP 328 (366)
..-++.|+.+| |++|.+....+. ..++.+..+|++.+... ..++....+.. .+|
T Consensus 15 k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~--~~P 86 (125)
T cd02951 15 KPLLLLFSQPG------CPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR--FTP 86 (125)
T ss_pred CcEEEEEeCCC------CHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc--ccc
Confidence 44566777775 999998765431 12566777787754211 24555566654 789
Q ss_pred EE-EEC
Q 038258 329 LV-FVK 333 (366)
Q Consensus 329 qV-FI~ 333 (366)
++ |++
T Consensus 87 t~~~~~ 92 (125)
T cd02951 87 TVIFLD 92 (125)
T ss_pred EEEEEc
Confidence 96 444
No 122
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.052 Score=49.25 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=50.9
Q ss_pred HHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccE
Q 038258 256 NVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMDSGFKEELRALMESKQVKVPL 329 (366)
Q Consensus 256 ~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D~e~reELkeltG~~~~tVPq 329 (366)
..|+++....+..-||-|+.+| |.-|+.+.-+|+++ .|.+..+|++.+.++.++ ++-+ .+|+
T Consensus 51 ~~~~~~Vi~S~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~----Y~I~--avPt 118 (150)
T KOG0910|consen 51 SEFDDKVINSDVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED----YEIS--AVPT 118 (150)
T ss_pred HHHHHHHHccCCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh----ccee--eeeE
Confidence 3456666556777899999999 88999999988765 466788888877765433 3544 7898
Q ss_pred E--EECCEEE
Q 038258 330 V--FVKGRLI 337 (366)
Q Consensus 330 V--FI~Gk~I 337 (366)
| |-||+-+
T Consensus 119 vlvfknGe~~ 128 (150)
T KOG0910|consen 119 VLVFKNGEKV 128 (150)
T ss_pred EEEEECCEEe
Confidence 8 4588654
No 123
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=94.31 E-value=0.091 Score=46.88 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEEcCC-C--HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 283 TFEDCNKVRSIIESHQVQTLERDISM-D--SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 283 tCp~C~kaK~lLes~gV~y~ErDVs~-D--~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
.|++|.+++-+|..+||+|+.+.++. . ....+++.+..... ++|.+.++|..+.....+.+..+
T Consensus 7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g--~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQG--LVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCC--cCCEEEECCEEeecHHHHHHHHH
Confidence 48999999999999999999988874 1 11234566654433 89999999988877766666443
No 124
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=94.05 E-value=0.19 Score=39.18 Aligned_cols=55 Identities=9% Similarity=0.206 Sum_probs=36.8
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC--------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH--------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~--------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
+...|++|+.+| |+.|..+...|+.. ++.+..+|.+.+... .+..+-. .+|.+++
T Consensus 13 ~~~~~i~f~~~~------C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~i~--~~P~~~~ 75 (102)
T TIGR01126 13 NKDVLVEFYAPW------CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDL----ASRFGVS--GFPTIKF 75 (102)
T ss_pred CCcEEEEEECCC------CHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHH----HHhCCCC--cCCEEEE
Confidence 445688888886 99998876666431 366777787665443 3444644 7998854
No 125
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=94.00 E-value=0.4 Score=38.90 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=37.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHH----CC---CcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIES----HQ---VQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRL 336 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes----~g---V~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~ 336 (366)
+..-|+.|+.+| |+.|..+...|+. ++ +.+..+|++ +++ +.+..+-. .+|.+++ +|+.
T Consensus 17 ~~~vvv~F~a~w------C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~v~--~~Pt~~~~~~g~~ 83 (102)
T cd02948 17 KGLTVVDVYQEW------CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYRGK--CEPTFLFYKNGEL 83 (102)
T ss_pred CCeEEEEEECCc------CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcCCC--cCcEEEEEECCEE
Confidence 444567778887 9999988777753 32 556777776 332 33444544 7887644 7864
No 126
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=93.99 E-value=0.21 Score=39.18 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=38.4
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHH----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIES----H--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes----~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
.-++.|+++| |+.|..+...|.. + .+.+..+|++.+.. +.+..+-. .+|++++ +|+.+
T Consensus 14 ~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~i~--~~Pt~~~~~~g~~~ 79 (96)
T cd02956 14 PVVVDFWAPR------SPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQFGVQ--ALPTVYLFAAGQPV 79 (96)
T ss_pred eEEEEEECCC------ChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHcCCC--CCCEEEEEeCCEEe
Confidence 4466677776 9999998777764 2 35567777766544 44444644 7899864 77654
No 127
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.37 Score=46.57 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=52.7
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
+.|.||+.- .|||..+++-.|..+||+|+.++++.... -+-|.+..-- ...||++..||+.|+---.+.++.
T Consensus 8 ~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~K-s~~ll~~np~-hkKVPvL~Hn~k~i~ESliiveYi 79 (231)
T KOG0406|consen 8 GTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTNK-SEWLLEKNPV-HKKVPVLEHNGKPICESLIIVEYI 79 (231)
T ss_pred CeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCCC-CHHHHHhccc-cccCCEEEECCceehhhHHHHHHH
Confidence 679999988 59999999999999999988888875420 1223343311 126999999999987555555544
Q ss_pred H
Q 038258 348 E 348 (366)
Q Consensus 348 E 348 (366)
+
T Consensus 80 D 80 (231)
T KOG0406|consen 80 D 80 (231)
T ss_pred H
Confidence 3
No 128
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=93.25 E-value=0.51 Score=41.18 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHH----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEE-E--CCEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIES----H--QVQTLERDISMDSGFKEELRALMESKQVKVPLVF-V--KGRL 336 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes----~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVF-I--~Gk~ 336 (366)
+..-|+.|+.+| |++|......|.. + .+.|..+|++.+. . .++.+..+-. .+|+++ + +|+.
T Consensus 20 gk~vvV~F~A~W------C~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~V~--~iPt~v~~~~~G~~ 89 (142)
T cd02950 20 GKPTLVEFYADW------CTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYRVD--GIPHFVFLDREGNE 89 (142)
T ss_pred CCEEEEEEECCc------CHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcCCC--CCCEEEEECCCCCE
Confidence 344566777776 9999988877764 2 3567777876442 1 2333444644 789884 4 4654
Q ss_pred E
Q 038258 337 I 337 (366)
Q Consensus 337 I 337 (366)
+
T Consensus 90 v 90 (142)
T cd02950 90 E 90 (142)
T ss_pred E
Confidence 4
No 129
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=93.12 E-value=0.24 Score=47.53 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHHCCCcEE--EEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHHh
Q 038258 283 TFEDCNKVRSIIESHQVQTL--ERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEEE 349 (366)
Q Consensus 283 tCp~C~kaK~lLes~gV~y~--ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~Es 349 (366)
.||+|+++-+.|..++++|. .+|++.-+ ++++.+++++ .+|.|..||+++-..+.+.+..|+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp~~--~~P~l~~d~~~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISPGG--KPPVLKFDEKWVTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCCCC--CCCeEEeCCceeccHHHHHHHHHH
Confidence 59999999999999999975 55555444 5577777665 799999999999998888776554
No 130
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=93.07 E-value=0.82 Score=35.68 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=46.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
+++|.... .+.|..++.+|...|++|+.+.++....+. ++..-......++|.+.+||..+....-+...
T Consensus 2 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNG------RGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCC------CChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 46787773 568899999999999999988876533321 12110000112799999999877765555543
No 131
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=93.06 E-value=0.41 Score=41.26 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=45.6
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-----C-CcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-----Q-VQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLI 337 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-----g-V~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~I 337 (366)
+...|+.|+..| ..||.|..+.-+|++. + +.+..+|++.++ ++....+-+ ++|++ |-+|+.+
T Consensus 27 ~~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V~--sIPTli~fkdGk~v 96 (111)
T cd02965 27 GGDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGVL--RTPALLFFRDGRYV 96 (111)
T ss_pred CCCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCCC--cCCEEEEEECCEEE
Confidence 556677777775 2399999999888653 2 557788888775 455555654 78988 4499887
Q ss_pred ecc
Q 038258 338 GGV 340 (366)
Q Consensus 338 GG~ 340 (366)
+..
T Consensus 97 ~~~ 99 (111)
T cd02965 97 GVL 99 (111)
T ss_pred EEE
Confidence 643
No 132
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=92.83 E-value=0.39 Score=36.47 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=34.8
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHH----C----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIES----H----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes----~----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
.-+++|+.+| |++|..+...|.. + ++.+..+|.+.+. ++.+..+-. .+|.+++
T Consensus 17 ~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i~--~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPW------CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGVR--GYPTIKL 77 (101)
T ss_pred cEEEEEECCC------CHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCCC--CCCEEEE
Confidence 5677777775 9999998887754 3 3556666665533 344445654 7898855
No 133
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.81 E-value=0.36 Score=43.84 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=38.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEEecc
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLIGGV 340 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~IGG~ 340 (366)
||-|+.+| |+.|..+...|+.+ .|.|..+|++.. ++....+-. .+|++ |-+|+.++..
T Consensus 87 VV~Fya~w------c~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~--~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPG------IPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTD--ALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCC------CchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCC--CCCEEEEEECCEEEEEE
Confidence 44456665 99999888777543 467778887642 455555654 78977 4499877533
No 134
>PRK10996 thioredoxin 2; Provisional
Probab=92.70 E-value=0.53 Score=40.74 Aligned_cols=61 Identities=13% Similarity=0.341 Sum_probs=40.5
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
+..-++.|+.+| |+.|..+...|... ++.+..+|++.++.+ .+..+-. ++|++++ +|+.+
T Consensus 52 ~k~vvv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~V~--~~Ptlii~~~G~~v 119 (139)
T PRK10996 52 DLPVVIDFWAPW------CGPCRNFAPIFEDVAAERSGKVRFVKVNTEAEREL----SARFRIR--SIPTIMIFKNGQVV 119 (139)
T ss_pred CCeEEEEEECCC------CHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHH----HHhcCCC--ccCEEEEEECCEEE
Confidence 344577777776 99999887777542 466777888766543 3444543 7888755 88755
Q ss_pred e
Q 038258 338 G 338 (366)
Q Consensus 338 G 338 (366)
.
T Consensus 120 ~ 120 (139)
T PRK10996 120 D 120 (139)
T ss_pred E
Confidence 3
No 135
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=92.66 E-value=0.37 Score=38.46 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=38.1
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCE
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGR 335 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk 335 (366)
..-++.|+.+| |+.|..+...|+.. .+.+..+|++.++. +.+..+-. .+|++++ +|+
T Consensus 19 ~~~~v~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v~--~~Pt~~~~~~g~ 83 (101)
T cd03003 19 EIWFVNFYSPR------CSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGVN--SYPSLYVFPSGM 83 (101)
T ss_pred CeEEEEEECCC------ChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCCC--ccCEEEEEcCCC
Confidence 34567777886 99999988887542 35677888876644 33334543 7898844 665
No 136
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=92.60 E-value=0.67 Score=38.32 Aligned_cols=60 Identities=10% Similarity=0.226 Sum_probs=39.5
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH----H---CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEE--ECCEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE----S---HQVQTLERDISMDSGFKEELRALMESKQVKVPLVF--VKGRL 336 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s---~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVF--I~Gk~ 336 (366)
+..-+|.|+.+| |+.|..+...|+ . .++.+..+|++.+... .+..|-. ++|+++ .+|+.
T Consensus 24 ~~~vlV~F~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l----~~~~~V~--~~Pt~~i~~~g~~ 91 (111)
T cd02963 24 KKPYLIKITSDW------CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRL----ARKLGAH--SVPAIVGIINGQV 91 (111)
T ss_pred CCeEEEEEECCc------cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHH----HHHcCCc--cCCEEEEEECCEE
Confidence 344566777786 999987765553 2 3577888888766543 3344644 789875 48866
Q ss_pred E
Q 038258 337 I 337 (366)
Q Consensus 337 I 337 (366)
+
T Consensus 92 ~ 92 (111)
T cd02963 92 T 92 (111)
T ss_pred E
Confidence 5
No 137
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.54 E-value=0.43 Score=37.91 Aligned_cols=55 Identities=11% Similarity=0.302 Sum_probs=38.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH-------CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES-------HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGR 335 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes-------~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk 335 (366)
.++.|+.+| |+.|..+...|+. .+|.+..+|++.++.+ .+..+-. ++|++++ +|+
T Consensus 19 ~lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~----~~~~~i~--~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGL----SGRFFVT--ALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhH----HHHcCCc--ccCEEEEeCCCC
Confidence 688888887 9999988877753 2577788888766543 3333543 7899865 664
No 138
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=92.51 E-value=0.38 Score=38.98 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=38.9
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHC------------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--C
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESH------------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--K 333 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~------------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~ 333 (366)
.-++.|+.+| |++|.++...|+.. .+.+..+|.+.+.. +.+..|-. ++|.+++ +
T Consensus 20 ~vlv~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~v~--~~Ptl~~~~~ 87 (108)
T cd02996 20 LVLVNFYADW------CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYRIN--KYPTLKLFRN 87 (108)
T ss_pred EEEEEEECCC------CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCCCC--cCCEEEEEeC
Confidence 4567788886 99999998877521 36677888876643 44555654 8998854 6
Q ss_pred CE
Q 038258 334 GR 335 (366)
Q Consensus 334 Gk 335 (366)
|+
T Consensus 88 g~ 89 (108)
T cd02996 88 GM 89 (108)
T ss_pred Cc
Confidence 65
No 139
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=92.42 E-value=0.41 Score=38.21 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
+..-++.|..+| |++|.++...|+.. .+.+..+|++.+.. .++.+..+-. .+|.+++
T Consensus 18 ~~~~lv~f~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~--~~~~~~~~i~--~~Pt~~~ 80 (109)
T cd03002 18 NYTTLVEFYAPW------CGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN--KPLCGKYGVQ--GFPTLKV 80 (109)
T ss_pred CCeEEEEEECCC------CHHHHhhChHHHHHHHHhcCCceEEEEecCcccc--HHHHHHcCCC--cCCEEEE
Confidence 334677788886 99999887766543 35567777775321 3344444644 7898865
No 140
>PRK10357 putative glutathione S-transferase; Provisional
Probab=92.17 E-value=0.38 Score=42.83 Aligned_cols=66 Identities=9% Similarity=-0.017 Sum_probs=46.2
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE-CCEEEeccHHHHh
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV-KGRLIGGVDEVMK 345 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI-~Gk~IGG~dEl~e 345 (366)
.+|+.. .|+++.+++-+|+.+||+|+.++++.... ..++.++...+ ++|++.. +|..+-....|.+
T Consensus 2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g--~vP~L~~~~g~~l~eS~aI~~ 68 (202)
T PRK10357 2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLG--KVPALVTEEGECWFDSPIIAE 68 (202)
T ss_pred eeecCC------CCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCcc--CCCeEEeCCCCeeecHHHHHH
Confidence 467776 58999999999999999999988875322 12344444333 7999985 6666655555544
No 141
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=92.15 E-value=0.33 Score=41.05 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=38.9
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHH------CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE---CCEEE
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIES------HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV---KGRLI 337 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes------~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI---~Gk~I 337 (366)
..-+|.|+.+| |++|..+...+.. ....|..+|++.+.+...+.....|. .+|++++ +|+.+
T Consensus 20 kpVlV~F~a~W------C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~---~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 20 KPLMLLIHKTW------CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGG---YIPRILFLDPSGDVH 90 (117)
T ss_pred CcEEEEEeCCc------CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCC---ccceEEEECCCCCCc
Confidence 33466677886 9999999877765 34568888998764322221122222 4898844 55554
Q ss_pred e
Q 038258 338 G 338 (366)
Q Consensus 338 G 338 (366)
+
T Consensus 91 ~ 91 (117)
T cd02959 91 P 91 (117)
T ss_pred h
Confidence 4
No 142
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=92.06 E-value=0.72 Score=37.66 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcC-CCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDIS-MDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs-~D~e~reELkeltG~~~~tVPqVFI 332 (366)
++.-+|.|+.+| |+.|+.....|+.+ ++.+..+|.+ .++ ++.+..+-. .+|++++
T Consensus 18 g~~vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~--~~PT~~l 78 (100)
T cd02999 18 EDYTAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVV--GFPTILL 78 (100)
T ss_pred CCEEEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCe--ecCEEEE
Confidence 455677888887 99999988877643 4667777776 343 344444644 7898754
No 143
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.88 E-value=0.56 Score=42.04 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=41.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH----C---CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEEe
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES----H---QVQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLIG 338 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes----~---gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~IG 338 (366)
-|+.|+.+| |+.|..+...|+. + ++.+..+|++.+++..+++.=.......++|++ |.+|+.++
T Consensus 50 vvV~Fya~w------C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 50 WLVEFFTTW------SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 477778886 9999988877743 2 488899999888765444411100001237877 55887764
No 144
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=91.88 E-value=0.8 Score=35.94 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=34.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES----H--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes----~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
-+++|..+| |+.|......|.. + .+.+..+|++.+.. +.+..+-. .+|++++
T Consensus 21 vlv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~--~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPW------CGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYGVR--GFPTIKV 78 (103)
T ss_pred EEEEEECCC------CHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCCCC--ccCEEEE
Confidence 466666675 9999998777754 2 46677788875544 33444644 7898744
No 145
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=91.84 E-value=0.53 Score=42.60 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHH--HCCCcEEEEEc
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIE--SHQVQTLERDI 306 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLe--s~gV~y~ErDV 306 (366)
.++..|++|+-. .||||.++...|. ..+|.+..+-+
T Consensus 76 ~~~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 76 NGKRVVYVFTDP------DCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCCEEEEEEECC------CCccHHHHHHHHhhccCceEEEEEEc
Confidence 356788888888 6999999999987 34565555544
No 146
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=91.77 E-value=1.3 Score=34.63 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=45.5
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 279 GIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 279 GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
|...-.|+|-++..+|+-.|++|+.... .++. ....+ .+|.|..+|+.|+|++.+.+..+
T Consensus 11 g~ps~sp~clk~~~~Lr~~~~~~~v~~~-~n~~-------~sp~g--kLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 11 GLPSVDPECLAVLAYLKFAGAPLKVVPS-NNPW-------RSPTG--KLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCCcCCHHHHHHHHHHHcCCCCEEEEec-CCCC-------CCCCC--ccCEEEECCEEecChHHHHHHHH
Confidence 5556689999999999999999966533 3321 11112 69999999999999999888654
No 147
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=91.35 E-value=0.72 Score=36.02 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=34.6
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHH----C----CCcEEEEEcCC-CHHHHHHHHHHhCCCCccccEEEE
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIES----H----QVQTLERDISM-DSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes----~----gV~y~ErDVs~-D~e~reELkeltG~~~~tVPqVFI 332 (366)
.-|+.|+.+| |+.|.+....+.. + .+.+..+|.+. +..+ .+..+-. .+|.+++
T Consensus 20 ~~~v~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~i~--~~P~~~~ 81 (105)
T cd02998 20 DVLVEFYAPW------CGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDL----AKKYGVS--GFPTLKF 81 (105)
T ss_pred cEEEEEECCC------CHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhh----HHhCCCC--CcCEEEE
Confidence 4567777775 9999888777653 2 35667777776 4433 3334544 7898865
No 148
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=91.27 E-value=0.89 Score=41.16 Aligned_cols=69 Identities=12% Similarity=0.235 Sum_probs=47.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEE-----CCE--EEecc
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFV-----KGR--LIGGV 340 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI-----~Gk--~IGG~ 340 (366)
+.+|..+ +++|.+|+-+|+.+||+|+.++|+... ....++.++.-.+ +||++.. ||. .|--.
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~g--kVP~L~~~~~~d~g~~~~L~ES 72 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNN--KIPAIVDHSPADGGEPLSLFES 72 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCC--CCCEEEeCCCCCCCCceeEEcH
Confidence 5678765 478999999999999999988887542 2235666665443 7999987 342 35444
Q ss_pred HHHHhHH
Q 038258 341 DEVMKLE 347 (366)
Q Consensus 341 dEl~eL~ 347 (366)
.-|.+..
T Consensus 73 ~AI~~YL 79 (215)
T PRK13972 73 GAILLYL 79 (215)
T ss_pred HHHHHHH
Confidence 4444433
No 149
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.53 Score=42.38 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=51.2
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH-HHHHHHHHHhCCCCccccEEEECCE-EEeccHHHHhHHH
Q 038258 271 VIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS-GFKEELRALMESKQVKVPLVFVKGR-LIGGVDEVMKLEE 348 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~-e~reELkeltG~~~~tVPqVFI~Gk-~IGG~dEl~eL~E 348 (366)
.+|... .+++|.+++-+|..+|++|+.+.|+... ...+++..+...+ +||++..+|- .|-....|.+..+
T Consensus 2 ~L~~~~------~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~g--kVPvL~~~~~~~l~ES~AI~~YL~ 73 (211)
T COG0625 2 KLYGSP------TSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLG--KVPALVDDDGEVLTESGAILEYLA 73 (211)
T ss_pred eeecCC------CCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCC--CCCEEeeCCCCeeecHHHHHHHHH
Confidence 466666 3699999999999999999999998764 3346676766544 7999998764 5555555555433
No 150
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=90.95 E-value=1.1 Score=38.80 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=43.4
Q ss_pred CCCcEEEEEecCCCCCCCCh-hHH----------HHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EE
Q 038258 266 GENAVVIYTTTLRGIRKTFE-DCN----------KVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLV--FV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp-~C~----------kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI 332 (366)
.+..|++|..++|+ || +|+ .+..+|+..+|.+..+|++.++.+ .+..|-+ ++|++ |-
T Consensus 26 ~~~~vvv~f~a~wc----~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~L----a~~~~I~--~iPTl~lfk 95 (120)
T cd03065 26 YDVLCLLYHEPVES----DKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKV----AKKLGLD--EEDSIYVFK 95 (120)
T ss_pred CCceEEEEECCCcC----ChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHH----HHHcCCc--cccEEEEEE
Confidence 34468888888752 33 586 345566677899999999988654 4444755 78888 55
Q ss_pred CCEEEe
Q 038258 333 KGRLIG 338 (366)
Q Consensus 333 ~Gk~IG 338 (366)
||+.+.
T Consensus 96 ~G~~v~ 101 (120)
T cd03065 96 DDEVIE 101 (120)
T ss_pred CCEEEE
Confidence 998654
No 151
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.33 Score=45.92 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE-CCEEEeccHHHHhHHHh
Q 038258 283 TFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV-KGRLIGGVDEVMKLEEE 349 (366)
Q Consensus 283 tCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI-~Gk~IGG~dEl~eL~Es 349 (366)
.||||.+||.++--++|++++.=+..|.+. -=.+..|++ .||.+.- +|++++-.-|+++...+
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~K--qVPiL~Kedg~~m~ESlDIV~y~d~ 71 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQK--QVPILQKEDGRAMPESLDIVHYVDE 71 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCccc--Chhhhhccc--ccceEEccccccchhhhHHHHHHHH
Confidence 699999999999999999988777655431 112345877 8998865 88999877777776544
No 152
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=0.49 Score=47.42 Aligned_cols=60 Identities=13% Similarity=0.326 Sum_probs=43.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEEecc
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLIGGV 340 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~IGG~ 340 (366)
-+|.|+.+| |+.|....-+|+.. .+....+|++.++.+...| |-+ ++|.| |++|+.|-||
T Consensus 46 VlV~fWap~------~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqf----giq--sIPtV~af~dGqpVdgF 113 (304)
T COG3118 46 VLVDFWAPW------CGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQF----GVQ--SIPTVYAFKDGQPVDGF 113 (304)
T ss_pred eEEEecCCC------CchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHh----CcC--cCCeEEEeeCCcCcccc
Confidence 355566665 99999999999854 3445677777776654444 765 88988 7899998877
No 153
>PRK11752 putative S-transferase; Provisional
Probab=90.38 E-value=1.2 Score=42.61 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=52.2
Q ss_pred CCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCC--HHHHHHHHHHhCCCCccccEEEECC-
Q 038258 264 PGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMD--SGFKEELRALMESKQVKVPLVFVKG- 334 (366)
Q Consensus 264 p~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D--~e~reELkeltG~~~~tVPqVFI~G- 334 (366)
|.+.+.+.+|+.. +++|.+|+-+|+.+ |++|+.+.|+.. .....++.++.-.+ +||++..++
T Consensus 39 ~~~~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~G--kVP~Lv~~dg 109 (264)
T PRK11752 39 PVGKHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNS--KIPALLDRSG 109 (264)
T ss_pred CCCCCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCC--CCCEEEeCCC
Confidence 4567789999854 79999999999996 888887777542 22235666665433 799998753
Q ss_pred ---EEEeccHHHHhHH
Q 038258 335 ---RLIGGVDEVMKLE 347 (366)
Q Consensus 335 ---k~IGG~dEl~eL~ 347 (366)
..|.....|.+..
T Consensus 110 ~~~~~L~ES~AIl~YL 125 (264)
T PRK11752 110 NPPIRVFESGAILLYL 125 (264)
T ss_pred CCCeEEEcHHHHHHHH
Confidence 4566555555543
No 154
>PLN02395 glutathione S-transferase
Probab=90.17 E-value=1.1 Score=40.16 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=50.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
+.||.... | .|.+++-+|..+|++|+.+.|+... ...+++.++.-.+ +||++..+|..|.....+.+..
T Consensus 3 ~~ly~~~~------~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g--~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 3 LKVYGPAF------A-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFG--VVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred EEEEcCCc------C-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCC--CCCEEEECCEEEEcHHHHHHHH
Confidence 67887542 2 4799999999999999988886432 1234566665443 7999999998787777776654
Q ss_pred H
Q 038258 348 E 348 (366)
Q Consensus 348 E 348 (366)
+
T Consensus 74 ~ 74 (215)
T PLN02395 74 A 74 (215)
T ss_pred H
Confidence 4
No 155
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=1.1 Score=38.06 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=40.2
Q ss_pred CcEEE-EEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCE----
Q 038258 268 NAVVI-YTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGR---- 335 (366)
Q Consensus 268 ~kVVI-YTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk---- 335 (366)
..||| |+.+| |+-|..+.-++..+ .+.|..+|++.. .++.+..+-+ .+|++.+ +|+
T Consensus 22 kliVvdF~a~w------CgPCk~i~P~~~~La~~y~~v~Flkvdvde~----~~~~~~~~V~--~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 22 KLVVVDFYATW------CGPCKAIAPKFEKLAEKYPDVVFLKVDVDEL----EEVAKEFNVK--AMPTFVFYKGGEEVDE 89 (106)
T ss_pred CeEEEEEECCC------CcchhhhhhHHHHHHHHCCCCEEEEEecccC----HhHHHhcCce--EeeEEEEEECCEEEEE
Confidence 44455 66666 99999999999875 355788899862 3333333544 7898833 664
Q ss_pred EEeccH
Q 038258 336 LIGGVD 341 (366)
Q Consensus 336 ~IGG~d 341 (366)
++|...
T Consensus 90 ~vGa~~ 95 (106)
T KOG0907|consen 90 VVGANK 95 (106)
T ss_pred EecCCH
Confidence 455443
No 156
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.00 E-value=0.95 Score=34.13 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=22.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcC
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDIS 307 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs 307 (366)
|++|+.. .||+|..+...|+.. ++.+..+.+.
T Consensus 1 i~~f~d~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDP------LCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECC------CCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 4567777 599999888888764 4666666654
No 157
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=89.88 E-value=0.79 Score=36.71 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 285 EDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 285 p~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
+.|.++..+|+..|++|+.+++..... ....+ .+|.+.+||+.|+...-+..+.+
T Consensus 18 ~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~G--kVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 18 ASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSG--KVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCC--cccEEEECCEEEeCHHHHHHHHh
Confidence 589999999999999998887543111 11112 69999999999998877776543
No 158
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=89.50 E-value=0.91 Score=35.58 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=35.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHC---------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESH---------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRL 336 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~---------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~ 336 (366)
.++.|+.+| |+.|......|+.. .+.+..+|.+.+.. +.+..+-. .+|.+++ +|+.
T Consensus 19 ~lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~--~~Pt~~~~~~g~~ 85 (102)
T cd03005 19 HFVKFFAPW------CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQVR--GYPTLLLFKDGEK 85 (102)
T ss_pred EEEEEECCC------CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcCCC--cCCEEEEEeCCCe
Confidence 667777886 99999876666422 46677777765543 33334543 7898754 6653
No 159
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=89.31 E-value=1.8 Score=33.47 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHCCCcEEEEEcCCC--HHHHHHHHHHhCC-CCccccEEEEC-CEEEeccHHHHhH
Q 038258 286 DCNKVRSIIESHQVQTLERDISMD--SGFKEELRALMES-KQVKVPLVFVK-GRLIGGVDEVMKL 346 (366)
Q Consensus 286 ~C~kaK~lLes~gV~y~ErDVs~D--~e~reELkeltG~-~~~tVPqVFI~-Gk~IGG~dEl~eL 346 (366)
.|..++-+|+..||+|+.+.++.. ....+++.+..-. . .+|.+.++ |..+-....+...
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g--~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFG--KVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSS--SSSEEEETTTEEEESHHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccc--eeeEEEECCCCEEEcHHHHHHH
Confidence 789999999999999988877753 2223666666544 3 79999999 9888766655544
No 160
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=88.84 E-value=0.83 Score=42.30 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=36.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEEe
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLIG 338 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~IG 338 (366)
||-|+.+| |+.|..+...|+.+ .+.|..+|++.. ...++-+ .+|+++| ||+.++
T Consensus 106 VV~Fya~w------c~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~--~lPTlliyk~G~~v~ 166 (192)
T cd02988 106 VVHLYKDG------IPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDK--NLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEECCC------CchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCC--CCCEEEEEECCEEEE
Confidence 44466675 99999988888754 477888887521 2334544 7998855 887654
No 161
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=88.71 E-value=3.5 Score=36.26 Aligned_cols=78 Identities=10% Similarity=0.171 Sum_probs=43.6
Q ss_pred CCcEEEEEecCCCCCCCChh--------HHHHHHHHHHCCCcEEEEEcCCCHHHH---HHHHH---HhCCCCccccEEEE
Q 038258 267 ENAVVIYTTTLRGIRKTFED--------CNKVRSIIESHQVQTLERDISMDSGFK---EELRA---LMESKQVKVPLVFV 332 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~--------C~kaK~lLes~gV~y~ErDVs~D~e~r---eELke---ltG~~~~tVPqVFI 332 (366)
|.+|.||--.+|=....|.- =..+-..|+..||.+..+++.+++... +.+.+ .-|.. .+|.++|
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e--~LPitlV 78 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAE--ALPITLV 78 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GG--G-SEEEE
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcc--cCCEEEE
Confidence 46788888877533334443 245567788999999999999886421 12222 22543 7999999
Q ss_pred CCEEE--eccHHHHhH
Q 038258 333 KGRLI--GGVDEVMKL 346 (366)
Q Consensus 333 ~Gk~I--GG~dEl~eL 346 (366)
||+.+ |.|-...+|
T Consensus 79 dGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 79 DGEIVKTGRYPTNEEL 94 (123)
T ss_dssp TTEEEEESS---HHHH
T ss_pred CCEEEEecCCCCHHHH
Confidence 99875 777554444
No 162
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=88.70 E-value=1.5 Score=34.43 Aligned_cols=61 Identities=13% Similarity=0.270 Sum_probs=37.3
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHH----H----CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEE
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIE----S----HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRL 336 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s----~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~ 336 (366)
..-++.|+.+| |++|.++...|. . ..+.+..+|++.+.. .++.+..|-. .+|.+++ +|+.
T Consensus 18 ~~~~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~~~~~i~--~~Pt~~~~~~g~~ 87 (104)
T cd02997 18 KHVLVMFYAPW------CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH--DALKEEYNVK--GFPTFKYFENGKF 87 (104)
T ss_pred CCEEEEEECCC------CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc--HHHHHhCCCc--cccEEEEEeCCCe
Confidence 35577788886 999998865543 2 236677788876311 2344444643 7888744 6653
Q ss_pred E
Q 038258 337 I 337 (366)
Q Consensus 337 I 337 (366)
+
T Consensus 88 ~ 88 (104)
T cd02997 88 V 88 (104)
T ss_pred e
Confidence 3
No 163
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=88.67 E-value=1.7 Score=41.51 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=39.3
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHHC----C--CcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESH----Q--VQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes~----g--V~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
..-++.|+.+| |++|.++...++.. . +.+..+|++.++ ++.+..+-. .+|++++ +|+.+
T Consensus 53 ~~vlV~FyApW------C~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I~--~~PTl~~f~~G~~v 119 (224)
T PTZ00443 53 GPWFVKFYAPW------CSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAIK--GYPTLLLFDKGKMY 119 (224)
T ss_pred CCEEEEEECCC------ChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCCC--cCCEEEEEECCEEE
Confidence 34577788887 99999988877643 2 556667776554 344445644 7898744 78665
No 164
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.63 E-value=1.7 Score=39.50 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCC--CccccEEEECCEEEecc---
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESK--QVKVPLVFVKGRLIGGV--- 340 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~--~~tVPqVFI~Gk~IGG~--- 340 (366)
..-++++|..+ +|.=|..--+.|+..|+.+.....+. ...+++.+|-. ..+-=+..|||++|-|.
T Consensus 24 ~~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 24 QATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred ceeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhcCCChhhccccEEEEcCEEEeccCCH
Confidence 44579999999 47889999999999999888877753 34566666632 12456889999999997
Q ss_pred HHHHhHHHhCc
Q 038258 341 DEVMKLEEEGK 351 (366)
Q Consensus 341 dEl~eL~EsGe 351 (366)
+++.+|.+++.
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 67777776654
No 165
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=88.44 E-value=1.2 Score=36.50 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=36.6
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-------CCcEEEEEcCCC-HHHHHHHHHHhCCCCccccEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-------QVQTLERDISMD-SGFKEELRALMESKQVKVPLVF 331 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-------gV~y~ErDVs~D-~e~reELkeltG~~~~tVPqVF 331 (366)
+..-++.|..+| |++|.++...|+.. ++.+..+|++.+ ..+ ..+..+.. .+|.++
T Consensus 21 ~k~vlv~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~---~~~~~~v~--~~Pti~ 83 (109)
T cd02993 21 NQSTLVVLYAPW------CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREF---AKEELQLK--SFPTIL 83 (109)
T ss_pred CCCEEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhh---HHhhcCCC--cCCEEE
Confidence 456788888886 99999988877642 466777777753 221 22334543 789884
No 166
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=87.84 E-value=2.9 Score=35.94 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=47.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLI 337 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~I 337 (366)
...+++||--|. +|+=+..|..-|+.+ .+++..+||-.+...-.++.+.+|-. ..-||+++ ||+.|
T Consensus 18 ~~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~-HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 18 KEKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVK-HESPQVILIKNGKVV 91 (105)
T ss_dssp --SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEEETTEEE
T ss_pred ccCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCC-cCCCcEEEEECCEEE
Confidence 466799998886 699999888877643 39999999999988888999998864 46799966 88876
Q ss_pred e
Q 038258 338 G 338 (366)
Q Consensus 338 G 338 (366)
-
T Consensus 92 ~ 92 (105)
T PF11009_consen 92 W 92 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 167
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=87.68 E-value=0.37 Score=42.01 Aligned_cols=64 Identities=11% Similarity=0.248 Sum_probs=32.8
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH----HC-CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE---CCEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE----SH-QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV---KGRLI 337 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s~-gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI---~Gk~I 337 (366)
..-.|.|++.+| |++|.+..-+|. .. ++.+..+..+.+.+..+.+.. .|. ..+|.+++ +|+.+
T Consensus 41 ~~~~ilvi~e~W------CgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~--~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 41 KPYNILVITETW------CGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG--RSIPTFIFLDKDGKEL 111 (129)
T ss_dssp S-EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS----SSEEEEE-TT--EE
T ss_pred CCcEEEEEECCC------chhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC--eecCEEEEEcCCCCEe
Confidence 445899999999 999987665554 44 566665555444443333322 233 48999866 34544
Q ss_pred e
Q 038258 338 G 338 (366)
Q Consensus 338 G 338 (366)
|
T Consensus 112 g 112 (129)
T PF14595_consen 112 G 112 (129)
T ss_dssp E
T ss_pred E
Confidence 4
No 168
>PF13728 TraF: F plasmid transfer operon protein
Probab=87.62 E-value=1.7 Score=40.98 Aligned_cols=59 Identities=8% Similarity=0.180 Sum_probs=40.4
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH----HCCCcEEEEEcCCC--H---HH--HHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE----SHQVQTLERDISMD--S---GF--KEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s~gV~y~ErDVs~D--~---e~--reELkeltG~~~~tVPqVFI 332 (366)
+...+++|..+ +|++|....-+|+ .+|+.+..++++-. + .. -..+.+.+|-. .+|.+|+
T Consensus 120 ~~~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~--~~Pal~L 189 (215)
T PF13728_consen 120 QKYGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK--VTPALFL 189 (215)
T ss_pred hCeEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC--cCCEEEE
Confidence 55678888888 6999987776665 67998888888621 1 11 12344445654 8999987
No 169
>PTZ00057 glutathione s-transferase; Provisional
Probab=87.11 E-value=5.4 Score=36.08 Aligned_cols=72 Identities=10% Similarity=0.246 Sum_probs=47.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH-HHH--HHHHHHhCCCCccccEEEECCEEEeccHHHHh
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS-GFK--EELRALMESKQVKVPLVFVKGRLIGGVDEVMK 345 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~-e~r--eELkeltG~~~~tVPqVFI~Gk~IGG~dEl~e 345 (366)
+++||.... .+.|..++-+|..+||+|+.+.+.... ++. +++..........+|.+.+||..+....-+..
T Consensus 4 ~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 4 EIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred ceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 478888764 467889999999999999999886432 211 11111001122379999999987776665555
Q ss_pred H
Q 038258 346 L 346 (366)
Q Consensus 346 L 346 (366)
.
T Consensus 78 Y 78 (205)
T PTZ00057 78 Y 78 (205)
T ss_pred H
Confidence 3
No 170
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=86.90 E-value=2.9 Score=36.25 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=37.1
Q ss_pred cEEE-EEecCCCCCCCChhHHHHHH-HHHH--------CCCcEEEEEcCCCHHHHHHHH----HHhCCCCccccEEEE--
Q 038258 269 AVVI-YTTTLRGIRKTFEDCNKVRS-IIES--------HQVQTLERDISMDSGFKEELR----ALMESKQVKVPLVFV-- 332 (366)
Q Consensus 269 kVVI-YTkSl~GiRktCp~C~kaK~-lLes--------~gV~y~ErDVs~D~e~reELk----eltG~~~~tVPqVFI-- 332 (366)
.|+| |++.| |++|+.+.. .+.. .++.+..+|++..++..+.+. ...|.. .+|.+++
T Consensus 17 pVll~f~a~W------C~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~--G~Pt~vfl~ 88 (124)
T cd02955 17 PIFLSIGYST------CHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQG--GWPLNVFLT 88 (124)
T ss_pred eEEEEEccCC------CHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCC--CCCEEEEEC
Confidence 4555 55554 999998854 2222 256667788876665543332 233544 6888855
Q ss_pred -CCEEEe
Q 038258 333 -KGRLIG 338 (366)
Q Consensus 333 -~Gk~IG 338 (366)
+|+.|.
T Consensus 89 ~~G~~~~ 95 (124)
T cd02955 89 PDLKPFF 95 (124)
T ss_pred CCCCEEe
Confidence 677773
No 171
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=86.78 E-value=2 Score=37.45 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=39.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHC-----C-CcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESH-----Q-VQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLI 337 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~-----g-V~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~I 337 (366)
-|+-|+.+| |+.|..+-.+|.++ + +.|..+||+.-+++.+++ +-. ..|+. |-+|+||
T Consensus 17 VVVdF~a~W------C~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y----~I~--amPtfvffkngkh~ 81 (114)
T cd02986 17 LVLRFGRDE------DAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYF----DIS--YIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEEeCCC------ChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhc----Cce--eCcEEEEEECCcEE
Confidence 355577776 99999998888764 3 678889998776654433 432 35554 5589986
No 172
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=86.74 E-value=2.1 Score=39.80 Aligned_cols=57 Identities=11% Similarity=0.281 Sum_probs=38.6
Q ss_pred EEEEEecCCCCCCCChhHHHH----HHHHHHCCCcEEEEEcCCCH-----HH----HHHHHHHhCCCCccccEEEE
Q 038258 270 VVIYTTTLRGIRKTFEDCNKV----RSIIESHQVQTLERDISMDS-----GF----KEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~ka----K~lLes~gV~y~ErDVs~D~-----e~----reELkeltG~~~~tVPqVFI 332 (366)
|++|+.+| ||+|.+. +++-+++++.+.-+.++.+. .+ ...+.+..|.....+|..|+
T Consensus 73 lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 73 VVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 89999997 9999876 67777889988777776431 11 12344455631137899976
No 173
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=86.66 E-value=2 Score=33.57 Aligned_cols=54 Identities=13% Similarity=0.283 Sum_probs=34.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC--------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH--------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~--------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
+..-++.|..+| |++|......|+.. .+.+..+|.+.+ ++....+.. .+|++++
T Consensus 18 ~~~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~--~~Pt~~~ 79 (104)
T cd02995 18 DKDVLVEFYAPW------CGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVVD--GFPTILF 79 (104)
T ss_pred CCcEEEEEECCC------CHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccCC--CCCEEEE
Confidence 345567788886 99999887777532 255666777643 222223433 7898854
No 174
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=85.73 E-value=2.3 Score=34.17 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=33.3
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHH----C---C--CcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIES----H---Q--VQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes----~---g--V~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
.--++.|+.+| |+.|......|+. + + +.+..+|+...+. +.+..+-. ++|++++
T Consensus 16 ~~vlv~f~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~I~--~~Pt~~l 78 (104)
T cd03000 16 DIWLVDFYAPW------CGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEFGVR--GYPTIKL 78 (104)
T ss_pred CeEEEEEECCC------CHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhcCCc--cccEEEE
Confidence 34566677776 9999977766643 2 3 5556667765543 33444544 7898844
No 175
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=85.70 E-value=1 Score=40.34 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=38.0
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCC------CcEEEEEcCCCHHHHHHHHHHhCCCCccccEE-EE-CCE
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQ------VQTLERDISMDSGFKEELRALMESKQVKVPLV-FV-KGR 335 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~g------V~y~ErDVs~D~e~reELkeltG~~~~tVPqV-FI-~Gk 335 (366)
--|+-|+.+| |+.|..+-.+|++.. +.+..+||+..+++.+++ +-+ ..+|.+ |. +|+
T Consensus 25 lVVvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y----~I~-~~~t~~~ffk~g~ 89 (142)
T PLN00410 25 LVVIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY----ELY-DPCTVMFFFRNKH 89 (142)
T ss_pred EEEEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc----Ccc-CCCcEEEEEECCe
Confidence 3567788887 999999988887542 456889998877654443 432 134666 44 555
No 176
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=85.70 E-value=2.1 Score=36.41 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=39.8
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGR 335 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk 335 (366)
..--++.|+.+| |++|+.+...|++. .+.+..+|++.+... ..+..+-. ++|++ |.+|+
T Consensus 29 ~~~vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~--~~PTl~lf~~g~ 95 (113)
T cd03006 29 AEVSLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFF--YFPVIHLYYRSR 95 (113)
T ss_pred CCEEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCc--ccCEEEEEECCc
Confidence 445688899998 99999998888754 266788888766533 22233433 67877 55665
No 177
>PRK10542 glutathionine S-transferase; Provisional
Probab=85.68 E-value=2.2 Score=37.74 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHCCCcEEEEEcCCCHH---HHHHHHHHhCCCCccccEEEE-CCEEEeccHHHHhHH
Q 038258 286 DCNKVRSIIESHQVQTLERDISMDSG---FKEELRALMESKQVKVPLVFV-KGRLIGGVDEVMKLE 347 (366)
Q Consensus 286 ~C~kaK~lLes~gV~y~ErDVs~D~e---~reELkeltG~~~~tVPqVFI-~Gk~IGG~dEl~eL~ 347 (366)
.+.+++-+|..+||+|+.+.|+.... ..+++.++.-.+ ++|++.+ ||..|-....+.+..
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g--~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKG--QVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCC--CCCeEEeCCCcEeecHHHHHHHH
Confidence 36778889999999999887765421 124566665443 7999987 667776666666543
No 178
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=85.05 E-value=2.8 Score=36.33 Aligned_cols=59 Identities=12% Similarity=0.260 Sum_probs=36.3
Q ss_pred CCcEEEEEe-------cCCCCCCCChhHHHHHHHHH----HC--CCcEEEEEcCCCHHHH---HHHHHHhCCCCccccEE
Q 038258 267 ENAVVIYTT-------TLRGIRKTFEDCNKVRSIIE----SH--QVQTLERDISMDSGFK---EELRALMESKQVKVPLV 330 (366)
Q Consensus 267 ~~kVVIYTk-------Sl~GiRktCp~C~kaK~lLe----s~--gV~y~ErDVs~D~e~r---eELkeltG~~~~tVPqV 330 (366)
..-|+.|+. +| |+.|..+.-+|+ .+ ++.|..+|++..+.++ .++....+-. ..+|++
T Consensus 22 ~~vvV~F~A~~~~~~~~W------C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~ 94 (119)
T cd02952 22 KPIFILFYGDKDPDGQSW------CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTL 94 (119)
T ss_pred CeEEEEEEccCCCCCCCC------CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc-cCCCEE
Confidence 344666777 78 999997766554 44 4889999997654222 2333332321 268988
Q ss_pred EE
Q 038258 331 FV 332 (366)
Q Consensus 331 FI 332 (366)
++
T Consensus 95 ~~ 96 (119)
T cd02952 95 LR 96 (119)
T ss_pred EE
Confidence 65
No 179
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=84.53 E-value=7.3 Score=33.10 Aligned_cols=71 Identities=15% Similarity=0.343 Sum_probs=38.4
Q ss_pred EEEEecCCCCCCCChhH------HHHHHHHHH--------CCCcEEEEEcCCCHH--HHHHHHHH-hCCCCccccEEEEC
Q 038258 271 VIYTTTLRGIRKTFEDC------NKVRSIIES--------HQVQTLERDISMDSG--FKEELRAL-MESKQVKVPLVFVK 333 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C------~kaK~lLes--------~gV~y~ErDVs~D~e--~reELkel-tG~~~~tVPqVFI~ 333 (366)
+||.... .|.-| +..-.+|+. ..+.|+.+||...++ ..+++.+. .... .=.|.|.|+
T Consensus 1 ~VYGAe~-----~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede-~fYPlV~i~ 74 (93)
T PF07315_consen 1 VVYGAEV-----ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDE-LFYPLVVIN 74 (93)
T ss_dssp EEEE-SS-------GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTS-S-SSEEEET
T ss_pred Ccccccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcc-cccceEEEC
Confidence 4677764 67777 344445542 246689999986643 33444433 3332 347999999
Q ss_pred CEEEe-ccHHHHhHH
Q 038258 334 GRLIG-GVDEVMKLE 347 (366)
Q Consensus 334 Gk~IG-G~dEl~eL~ 347 (366)
|+.|| |+-.+...+
T Consensus 75 ~eiV~EGnp~LK~I~ 89 (93)
T PF07315_consen 75 DEIVAEGNPQLKDIY 89 (93)
T ss_dssp TEEEEESS--HHHHH
T ss_pred CEEEecCCccHHHHH
Confidence 99998 555554443
No 180
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=83.69 E-value=2.6 Score=33.21 Aligned_cols=55 Identities=9% Similarity=0.133 Sum_probs=36.0
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHH----C--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIES----H--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes----~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
.-+++|..++ |+.|..++..|+. + .|.|..+|++..+.+ .+..|-....+|++.+
T Consensus 14 ~~~~~f~~~~------~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~----~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 14 PLLVLFYNKD------DSESEELRERFKEVAKKFKGKLLFVVVDADDFGRH----LEYFGLKEEDLPVIAI 74 (103)
T ss_pred CEEEEEEcCC------hhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHH----HHHcCCChhhCCEEEE
Confidence 4566677774 9999999998875 2 366777777654433 3334532226899865
No 181
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=83.13 E-value=8.7 Score=36.34 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=35.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHC----CCcEEEEEcC-----------CCHHH---HHHHHHHhCCCCccccEEE
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESH----QVQTLERDIS-----------MDSGF---KEELRALMESKQVKVPLVF 331 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~----gV~y~ErDVs-----------~D~e~---reELkeltG~~~~tVPqVF 331 (366)
|.|||.. +|.-|=-|-++|.++ +|-...+-|+ ..+++ +....+..|.+..-.||++
T Consensus 2 VELFTSQ------GCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQ------GCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-T------T-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCC------CCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 7899998 599998888888754 3433333332 22332 3344455565544569999
Q ss_pred ECC-EEEeccH
Q 038258 332 VKG-RLIGGVD 341 (366)
Q Consensus 332 I~G-k~IGG~d 341 (366)
||| .++.|.+
T Consensus 76 VnG~~~~~g~~ 86 (202)
T PF06764_consen 76 VNGREHRVGSD 86 (202)
T ss_dssp ETTTEEEETT-
T ss_pred ECCeeeeeccC
Confidence 999 5566665
No 182
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=83.04 E-value=8.4 Score=30.32 Aligned_cols=62 Identities=6% Similarity=0.124 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHCCCcEEEEEcCCCH-H-H-HHHHHH-H--hCCCCccccEEEECCEEEeccHHHHhH
Q 038258 285 EDCNKVRSIIESHQVQTLERDISMDS-G-F-KEELRA-L--MESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 285 p~C~kaK~lLes~gV~y~ErDVs~D~-e-~-reELke-l--tG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
+.|..++-+|..+||+|+.+.|+... + . .++... . .+....+||.+.+||..+.-..-++..
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence 47889999999999999988887532 1 1 122211 1 121223799999998877655555443
No 183
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=82.59 E-value=1.9 Score=42.81 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=49.9
Q ss_pred CCCcEEEEEecCCCCCCCC----hhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccH
Q 038258 266 GENAVVIYTTTLRGIRKTF----EDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVD 341 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktC----p~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~d 341 (366)
.++.|.+|.-+= -++| |+|-++..+|+.++|+|+.++-.+- .++..+ ++|-|-.||++|.+.+
T Consensus 42 kkD~VYLyQF~R---~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~--------~rSr~G--~lPFIELNGe~iaDS~ 108 (281)
T KOG4244|consen 42 KKDTVYLYQFPR---TKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK--------RRSRNG--TLPFIELNGEHIADSD 108 (281)
T ss_pred ccCeEEEEeccc---cCCCCCCChHHHHHHHHHHHhCCCceeccccce--------eeccCC--CcceEEeCCeeccccH
Confidence 456677776652 2234 6899999999999999999987642 112222 7999999999999987
Q ss_pred HHHh
Q 038258 342 EVMK 345 (366)
Q Consensus 342 El~e 345 (366)
-+..
T Consensus 109 ~I~~ 112 (281)
T KOG4244|consen 109 LIED 112 (281)
T ss_pred HHHH
Confidence 6654
No 184
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=81.08 E-value=4.4 Score=39.41 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH----HCCCcEEEEEcCCCHH-----H--HHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE----SHQVQTLERDISMDSG-----F--KEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s~gV~y~ErDVs~D~e-----~--reELkeltG~~~~tVPqVFI 332 (366)
+...|+.|..+| |++|.....+|+ .+|+.+..++++.+.. + -..+.+..|-. .+|.+|+
T Consensus 166 ~k~~Lv~F~Asw------Cp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~--~vPtl~L 235 (271)
T TIGR02740 166 KKSGLFFFFKSD------CPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIR--TVPAVFL 235 (271)
T ss_pred CCeEEEEEECCC------CccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCC--cCCeEEE
Confidence 555777788886 999987766664 5788877778765320 0 02244455654 8999966
No 185
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=80.48 E-value=3.9 Score=34.13 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=34.6
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHHC---------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESH---------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes~---------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
..-|+.|+.+| |+.|......++.. .|.+..+|.+.+.. .++.+..+-+ .+|++++
T Consensus 20 ~~vvV~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~--~~~~~~~~i~--~~Pt~~l 84 (114)
T cd02992 20 SAWLVEFYASW------CGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN--VALCRDFGVT--GYPTLRY 84 (114)
T ss_pred CeEEEEEECCC------CHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh--HHHHHhCCCC--CCCEEEE
Confidence 34567777886 99999887776532 15555666543321 3444444654 7898865
No 186
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=79.36 E-value=8.5 Score=31.97 Aligned_cols=35 Identities=6% Similarity=0.135 Sum_probs=20.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH-------C--CCcEEEEEcCCC
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES-------H--QVQTLERDISMD 309 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes-------~--gV~y~ErDVs~D 309 (366)
-++.|..+| |+.|......|.. . ++.+..++++.+
T Consensus 21 vll~Fwa~w------C~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 21 VGLYFSASW------CPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred EEEEEECCC------ChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 445555664 9999876555532 2 566666666644
No 187
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=78.87 E-value=3.8 Score=39.88 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=47.4
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCCCc--EEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEec----cH
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQ--TLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGG----VD 341 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~--y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG----~d 341 (366)
-.|-||+-- ||-.|...-..|+.+|+. +..+|....+. .+++.. ..++|-||+||+.+-+ .+
T Consensus 11 ~~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~~----V~SvP~Vf~DGel~~~dpVdp~ 78 (265)
T COG5494 11 MEVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEKG----VISVPSVFIDGELVYADPVDPE 78 (265)
T ss_pred eEEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhcc----eeecceEEEcCeEEEcCCCCHH
Confidence 358888887 799999999999999876 55555554432 333321 3489999999998743 24
Q ss_pred HHHhHHH
Q 038258 342 EVMKLEE 348 (366)
Q Consensus 342 El~eL~E 348 (366)
++..+.+
T Consensus 79 ~ies~~~ 85 (265)
T COG5494 79 EIESILS 85 (265)
T ss_pred HHHHHHc
Confidence 5544443
No 188
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=77.44 E-value=11 Score=31.76 Aligned_cols=36 Identities=3% Similarity=0.101 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHH-------HC--CCcEEEEEcCCC
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIE-------SH--QVQTLERDISMD 309 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLe-------s~--gV~y~ErDVs~D 309 (366)
--++.|..+| |+.|...-..|+ .. ++.+..++++.+
T Consensus 19 ~vll~F~atw------C~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 19 TVGLYFSASW------CPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred EEEEEEECCC------CchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 3445555665 999987555443 22 466666666654
No 189
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.80 E-value=9.4 Score=36.23 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=50.1
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
..++.-.. ...|+-+|.+|.-.||+|++.-+..... -.+++..+-- .++|++-|||..|...-.+.++
T Consensus 4 ykL~Yf~~------RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pf--gqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 4 YKLTYFNI------RGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPF--GQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred eEEEecCc------chhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCC--CCCCEEeECCEeeccHHHHHHH
Confidence 34555554 4699999999999999999999987653 2444444333 3799999999998876666554
No 190
>PTZ00062 glutaredoxin; Provisional
Probab=75.75 E-value=8.8 Score=36.22 Aligned_cols=52 Identities=8% Similarity=0.223 Sum_probs=33.8
Q ss_pred CcEEEEE-ecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEEec
Q 038258 268 NAVVIYT-TTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLIGG 339 (366)
Q Consensus 268 ~kVVIYT-kSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~IGG 339 (366)
+.+++|. .+| |+.|..+...|..+ .+.|..+|.+ .+- ..+|.+ |-+|+.|+-
T Consensus 18 g~~vl~f~a~w------~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~V--~~vPtfv~~~~g~~i~r 77 (204)
T PTZ00062 18 GKLVLYVKSSK------EPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DAN--NEYGVFEFYQNSQLINS 77 (204)
T ss_pred CcEEEEEeCCC------CcchHHHHHHHHHHHHHCCCcEEEEEccc------------cCc--ccceEEEEEECCEEEee
Confidence 4455555 676 99999999999865 3555555543 343 378966 348877664
No 191
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=75.47 E-value=16 Score=30.03 Aligned_cols=39 Identities=8% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHH----CCCcEEEEEcCCCH
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIES----HQVQTLERDISMDS 310 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes----~gV~y~ErDVs~D~ 310 (366)
+..-|+.|..+| |+.|......|.. +++.+..++++.+.
T Consensus 25 gk~vvv~F~a~~------C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~ 67 (127)
T cd03010 25 GKPYLLNVWASW------CAPCREEHPVLMALARQGRVPIYGINYKDNP 67 (127)
T ss_pred CCEEEEEEEcCc------CHHHHHHHHHHHHHHHhcCcEEEEEECCCCH
Confidence 334466666664 9999876666654 35666666655443
No 192
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=75.45 E-value=14 Score=33.36 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH---HCCCcEEEEEcCCCHH
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE---SHQVQTLERDISMDSG 311 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe---s~gV~y~ErDVs~D~e 311 (366)
++..|+.|+.+| |+.|.+.-..|. ..++.+.-++++.+..
T Consensus 68 gk~vvv~Fwatw------C~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 68 GKPVLLNVWATW------CPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred CCEEEEEEECCC------CHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 334566677776 999977554443 4578887787765543
No 193
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=74.86 E-value=9.1 Score=41.04 Aligned_cols=57 Identities=9% Similarity=0.166 Sum_probs=36.6
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHH-------HH-CCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSII-------ES-HQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lL-------es-~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
.-++-|+.+| |+.|+...... +. .++.+..+|++.+.....++.+..|-. .+|.+++
T Consensus 476 ~VlVdF~A~W------C~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~--g~Pt~~~ 540 (571)
T PRK00293 476 PVMLDLYADW------CVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL--GLPTILF 540 (571)
T ss_pred cEEEEEECCc------CHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC--CCCEEEE
Confidence 3455577776 99998875532 11 357788899986543334555556654 7898854
No 194
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=74.78 E-value=13 Score=33.32 Aligned_cols=37 Identities=8% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH----HCCCcEEEEEcCC
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE----SHQVQTLERDISM 308 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s~gV~y~ErDVs~ 308 (366)
+...|+.|..+| |+.|.+.--.|+ ++++.+.-++++.
T Consensus 50 ~~~~lvnFWAsW------CppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 50 DDYALVFFYQST------CPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CCCEEEEEECCC------ChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 445699999997 999987666664 5677777777764
No 195
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=74.39 E-value=18 Score=31.12 Aligned_cols=39 Identities=13% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHH----HH---CCCcEEEEEcCCCH
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSII----ES---HQVQTLERDISMDS 310 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lL----es---~gV~y~ErDVs~D~ 310 (366)
++..++.|+.+| |+.|......| ++ .++.+..++.+.+.
T Consensus 61 ~k~~~l~f~a~~------C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 61 GKGVFLNFWGTW------CKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred CCEEEEEEECCc------CHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 334556666664 99997754333 22 34777777776553
No 196
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=71.26 E-value=5.6 Score=38.17 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHH----HCCCcEEEEEc
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIE----SHQVQTLERDI 306 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s~gV~y~ErDV 306 (366)
.++..|++|+-. .||||+++-.-+. .-.|.+..+.+
T Consensus 116 ~ak~~I~vFtDp------~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 116 DAPRIVYVFADP------NCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCCeEEEEEECC------CChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 355678888888 6999998866554 32366655543
No 197
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=71.06 E-value=12 Score=36.62 Aligned_cols=59 Identities=8% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHH----HHCCCcEEEEEcCCC--HHHH-----HHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSII----ESHQVQTLERDISMD--SGFK-----EELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lL----es~gV~y~ErDVs~D--~e~r-----eELkeltG~~~~tVPqVFI 332 (366)
....+++|..+ +|++|.+.--+| +.+|+.+.-++++-. +.+. ..+.+.+|-. .+|.+|+
T Consensus 150 ~~~gL~fFy~~------~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~Pal~L 219 (256)
T TIGR02739 150 QSYGLFFFYRG------KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVK--YFPALYL 219 (256)
T ss_pred hceeEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCc--cCceEEE
Confidence 55678888888 699998876666 578998888888743 2211 1233444644 7899977
No 198
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=70.80 E-value=11 Score=39.97 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEE--ECC
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-------QVQTLERDISMDSGFKEELRALMESKQVKVPLVF--VKG 334 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVF--I~G 334 (366)
+..-||.|+.+| |++|+.+...|+.+ ++.+..+|++.+.. +.+.+..+-. .+|+|+ -+|
T Consensus 371 ~k~VLV~FyApW------C~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~--~~PTii~Fk~g 438 (463)
T TIGR00424 371 KEAWLVVLYAPW------CPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLG--SFPTILFFPKH 438 (463)
T ss_pred CCeEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCC--ccceEEEEECC
Confidence 444677788897 99999888877532 47788888886632 1222333543 788884 355
No 199
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=70.76 E-value=19 Score=27.95 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=29.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHH---------HCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIE---------SHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLe---------s~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
-+|+|+..| |++|..+.+.+- ..++.+..+|++..... ..+.. . .+|.++|
T Consensus 20 vlv~f~a~w------C~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~-~~~~~---~---~~P~~~~ 79 (82)
T PF13899_consen 20 VLVDFGADW------CPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN-AQFDR---Q---GYPTFFF 79 (82)
T ss_dssp EEEEEETTT------THHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH-HHHHH---C---SSSEEEE
T ss_pred EEEEEECCC------CHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh-HHhCC---c---cCCEEEE
Confidence 345555554 999988876652 23566777777533321 12222 2 3798865
No 200
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.60 E-value=8.8 Score=40.23 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=45.9
Q ss_pred hhHHHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCC-----CcEEEEEcCCCHHHHHHHHHHhCCCCcc
Q 038258 252 ESLLNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQ-----VQTLERDISMDSGFKEELRALMESKQVK 326 (366)
Q Consensus 252 ~~~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~g-----V~y~ErDVs~D~e~reELkeltG~~~~t 326 (366)
.++++.++.. .+.-...-|..- +|..|-.+.+.|.-+. |..+-+|= .-|++|...+ + ...
T Consensus 105 q~vieqik~i---~g~~~FETy~Sl------tC~nCPDVVQALN~msvlNp~I~H~~IdG---a~Fq~Evear-~--IMa 169 (520)
T COG3634 105 QDVIEQIKAI---DGDFHFETYFSL------TCHNCPDVVQALNLMSVLNPRIKHTAIDG---ALFQDEVEAR-N--IMA 169 (520)
T ss_pred HHHHHHHHhc---CCceeEEEEEEe------eccCChHHHHHHHHHHhcCCCceeEEecc---hhhHhHHHhc-c--cee
Confidence 3455666655 355567777666 4777766666666543 33444443 3567777654 2 237
Q ss_pred ccEEEECCEEEe
Q 038258 327 VPLVFVKGRLIG 338 (366)
Q Consensus 327 VPqVFI~Gk~IG 338 (366)
||.||.||+..|
T Consensus 170 VPtvflnGe~fg 181 (520)
T COG3634 170 VPTVFLNGEEFG 181 (520)
T ss_pred cceEEEcchhhc
Confidence 999999999887
No 201
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=69.37 E-value=22 Score=31.49 Aligned_cols=37 Identities=5% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHH---CCCcEEEEEcCCC
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIES---HQVQTLERDISMD 309 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes---~gV~y~ErDVs~D 309 (366)
+.-|+.|+.+| |+.|.+....|+. .++.+.-++++.+
T Consensus 64 k~vll~F~a~w------C~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 64 KPVLLNVWASW------CPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred CEEEEEEECCc------CHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 33455666665 9999877555543 4777777777544
No 202
>PTZ00102 disulphide isomerase; Provisional
Probab=69.35 E-value=12 Score=37.71 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=37.6
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH-------HC--CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CC
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE-------SH--QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KG 334 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe-------s~--gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~G 334 (366)
+..-+|.|+.+| |++|.++...+. .. .|.+..+|...+.. +.+..+-. .+|++++ +|
T Consensus 49 ~~~~lv~f~a~w------C~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~~i~--~~Pt~~~~~~g 116 (477)
T PTZ00102 49 NEIVLVKFYAPW------CGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEFGVR--GYPTIKFFNKG 116 (477)
T ss_pred CCcEEEEEECCC------CHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhcCCC--cccEEEEEECC
Confidence 345788888887 999987765443 22 36778888776644 34444544 7898844 55
Q ss_pred E
Q 038258 335 R 335 (366)
Q Consensus 335 k 335 (366)
.
T Consensus 117 ~ 117 (477)
T PTZ00102 117 N 117 (477)
T ss_pred c
Confidence 4
No 203
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.41 E-value=42 Score=29.01 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=46.3
Q ss_pred CCCcEEEEEecCCCCCCCChhHH------HHHHHHHH--------CCCcEEEEEcCCCH--HHHHHHHHHhCCCCccccE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCN------KVRSIIES--------HQVQTLERDISMDS--GFKEELRALMESKQVKVPL 329 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~------kaK~lLes--------~gV~y~ErDVs~D~--e~reELkeltG~~~~tVPq 329 (366)
...+++||.... .|--|- ..-.+|+. ..+.|+.+||..++ ..-.++.+..-+..--.|.
T Consensus 3 ~~~~l~VyGae~-----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl 77 (106)
T COG4837 3 NEAKLVVYGAEV-----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL 77 (106)
T ss_pred ceeEEEEecchh-----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence 345788898875 677773 34445542 24568999997553 2233444433222235799
Q ss_pred EEECCEEEe-ccHHHHhH
Q 038258 330 VFVKGRLIG-GVDEVMKL 346 (366)
Q Consensus 330 VFI~Gk~IG-G~dEl~eL 346 (366)
|.|+|++|+ |+-.+.+.
T Consensus 78 ivvedeiVaeGnprlKdi 95 (106)
T COG4837 78 IVVEDEIVAEGNPRLKDI 95 (106)
T ss_pred EEEcceEeecCCchHHHH
Confidence 999999997 55444443
No 204
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=67.05 E-value=14 Score=36.52 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=37.8
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHH-------HCC--CcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEE
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIE-------SHQ--VQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRL 336 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLe-------s~g--V~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~ 336 (366)
--++.|+.+| |++|.++...+. ..+ |.+..+|.+.+. ++.+..|-. .+|++++ +|+.
T Consensus 20 ~~~v~f~a~w------C~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~--~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 20 FVLVEFYAPW------CGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKYGVS--GYPTLKIFRNGED 87 (462)
T ss_pred CEEEEEECCC------CHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhCCCc--cccEEEEEeCCcc
Confidence 3577888887 999998765443 344 777888877654 344445654 7898844 5654
No 205
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=67.04 E-value=11 Score=33.05 Aligned_cols=53 Identities=15% Similarity=0.352 Sum_probs=37.5
Q ss_pred CCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECC
Q 038258 279 GIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKG 334 (366)
Q Consensus 279 GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~G 334 (366)
|.|.-|++|..+.-+|..+ .+.+..+|.-.. |.++.+++|...-++|+++.++
T Consensus 19 G~~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 19 GQRFYCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CceEECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCC
Confidence 5567899999999999876 344455544322 6778888885334789998755
No 206
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=66.63 E-value=21 Score=28.28 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHHHHCCCc---EEEEEcCCCHHHHHHHHHHhCCCCccccEEEE-CCEEEeccHHHHhHH
Q 038258 282 KTFEDCNKVRSIIESHQVQ---TLERDISMDSGFKEELRALMESKQVKVPLVFV-KGRLIGGVDEVMKLE 347 (366)
Q Consensus 282 ktCp~C~kaK~lLes~gV~---y~ErDVs~D~e~reELkeltG~~~~tVPqVFI-~Gk~IGG~dEl~eL~ 347 (366)
-.-+.|-++..+|+-.+.+ |+.+-.+. +. ++-.+ .+|.+.. +|+.+.|+.++.+..
T Consensus 12 sid~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~-------~Sptg--~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW-------LSPTG--ELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred ccCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC-------cCCCC--CCCEEEECCCcEEECHHHHHHhh
Confidence 3468999999999999999 66665542 21 11122 6999999 999999999998754
No 207
>PLN02309 5'-adenylylsulfate reductase
Probab=66.09 E-value=12 Score=39.37 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC-------CCcEEEEEcC-CCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH-------QVQTLERDIS-MDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~-------gV~y~ErDVs-~D~e~reELkeltG~~~~tVPqVFI 332 (366)
++.-||.|+.+| |++|+.+...|+.+ +|.+..+|++ .+..+ ..+..+-. .+|+|++
T Consensus 365 ~k~vlV~FyApW------C~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~--~~PTil~ 428 (457)
T PLN02309 365 KEPWLVVLYAPW------CPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLG--SFPTILL 428 (457)
T ss_pred CCeEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCc--eeeEEEE
Confidence 556788999998 99999888777543 4667777776 33322 22233543 7898844
No 208
>PTZ00102 disulphide isomerase; Provisional
Probab=64.48 E-value=40 Score=34.01 Aligned_cols=55 Identities=4% Similarity=0.108 Sum_probs=35.3
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC--------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH--------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~--------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
+..-++.|+.+| |++|......|+.. .|.+..+|.+.+... .+..+- ..+|++++
T Consensus 375 ~k~vlv~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~~v--~~~Pt~~~ 437 (477)
T PTZ00102 375 DKDVLLEIYAPW------CGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEFSW--SAFPTILF 437 (477)
T ss_pred CCCEEEEEECCC------CHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcCCC--cccCeEEE
Confidence 556677788887 99999888877643 255667777655432 222233 36888844
No 209
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=62.68 E-value=13 Score=31.33 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=27.7
Q ss_pred CCCCCcEEEEEecCCCCCCCChhHHHHHH----HHHHC----CCcEEEEEcCCC
Q 038258 264 PGGENAVVIYTTTLRGIRKTFEDCNKVRS----IIESH----QVQTLERDISMD 309 (366)
Q Consensus 264 p~~~~kVVIYTkSl~GiRktCp~C~kaK~----lLes~----gV~y~ErDVs~D 309 (366)
|.....|++|.-- .||+|.++-. +++.+ .|.|..+++-.+
T Consensus 10 ~~a~~~v~~f~d~------~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 10 PDAPITVTEFFDF------QCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TTTSEEEEEEE-T------TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCCCeEEEEEECC------CCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 4456678888888 5999976644 44554 677899988654
No 210
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=61.68 E-value=7.5 Score=32.21 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCcEEEEEcCC-CHHHHHHHH------HHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 288 NKVRSIIESHQVQTLERDISM-DSGFKEELR------ALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 288 ~kaK~lLes~gV~y~ErDVs~-D~e~reELk------eltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
..+..++..+|+...+++-.. +..+.+.++ ...|- ..+|.++|+|+.+-|+.+...|.
T Consensus 86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi--~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGI--TGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCC--CcCCeEEECCEEecCCCCHHHHH
Confidence 346667777787654322221 122222222 22243 37999999999999987765554
No 211
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=61.37 E-value=5.2 Score=40.03 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=53.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH-HHH-HHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS-GFK-EELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~-e~r-eELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
.|+|.-++ .-++++|+-.+.++||.|+.+||+.-. +.. ..+.++.-.. .||++.-+...|-.+.++.++.
T Consensus 27 ~vLyhhpy------sf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~g--evPVl~~g~~II~d~tqIIdYv 98 (325)
T KOG4420|consen 27 LVLYHHPY------SFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGG--EVPVLIHGDNIISDYTQIIDYV 98 (325)
T ss_pred ceeeecCc------ccccceeeeehhhcccccceeeccCccccccCchheecCCCC--CCceEecCCeecccHHHHHHHH
Confidence 89999996 457899999999999999999998542 212 2233333222 6898766667788999999888
Q ss_pred Hh
Q 038258 348 EE 349 (366)
Q Consensus 348 Es 349 (366)
|.
T Consensus 99 Er 100 (325)
T KOG4420|consen 99 ER 100 (325)
T ss_pred HH
Confidence 87
No 212
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=60.38 E-value=14 Score=36.13 Aligned_cols=59 Identities=5% Similarity=0.094 Sum_probs=38.4
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH----HCCCcEEEEEcCC--CHHHHH-----HHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE----SHQVQTLERDISM--DSGFKE-----ELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe----s~gV~y~ErDVs~--D~e~re-----ELkeltG~~~~tVPqVFI 332 (366)
....+++|..+ +|++|.+.--+|+ .+|+.+.-+.++- .+++.+ ...+.+|-. .+|.+|+
T Consensus 143 ~~~GL~fFy~s------~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~PAl~L 212 (248)
T PRK13703 143 EHYGLMFFYRG------QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVK--YFPALML 212 (248)
T ss_pred hcceEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCc--ccceEEE
Confidence 55788888888 6999988666664 6788877777753 122111 122334543 7899987
No 213
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=60.28 E-value=50 Score=25.05 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHH----HHC---CCcEEEEEcCCC
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSII----ESH---QVQTLERDISMD 309 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lL----es~---gV~y~ErDVs~D 309 (366)
++..++.|..+| |+.|......| +.+ ++.+..++++.+
T Consensus 19 ~k~~ll~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 19 GKVVLVNFWASW------CPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred CCEEEEEeeccc------ChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 334566666665 99997544444 343 577888888764
No 214
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=59.83 E-value=11 Score=31.15 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHH----C-CCcEEEEEcC
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIES----H-QVQTLERDIS 307 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes----~-gV~y~ErDVs 307 (366)
.....|++|+-. .||+|.+....|.. + .+.+..+++.
T Consensus 4 ~a~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDY------NCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 355677778766 59999887766654 2 2566666664
No 215
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=57.89 E-value=24 Score=37.34 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHC--CCc-EEEEEcCCCHH-HHHHHHHH---hCCCCccccEEE---E----CCEEEeccHHHHhHH
Q 038258 282 KTFEDCNKVRSIIESH--QVQ-TLERDISMDSG-FKEELRAL---MESKQVKVPLVF---V----KGRLIGGVDEVMKLE 347 (366)
Q Consensus 282 ktCp~C~kaK~lLes~--gV~-y~ErDVs~D~e-~reELkel---tG~~~~tVPqVF---I----~Gk~IGG~dEl~eL~ 347 (366)
-.|||=.++.-+-+.+ .++ |....|..+|+ +.+.|+++ .|+....-|.|. + .|..|||+.|++++.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 4699988887776644 444 88899988874 34444444 465445779995 4 779999999999886
Q ss_pred Hh
Q 038258 348 EE 349 (366)
Q Consensus 348 Es 349 (366)
+.
T Consensus 82 ~~ 83 (452)
T cd05295 82 ES 83 (452)
T ss_pred HH
Confidence 53
No 216
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=56.91 E-value=54 Score=27.13 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=28.2
Q ss_pred CcEEEEE-ecCCCCCCCChhHHHHHHH-------HHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEE
Q 038258 268 NAVVIYT-TTLRGIRKTFEDCNKVRSI-------IESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVF 331 (366)
Q Consensus 268 ~kVVIYT-kSl~GiRktCp~C~kaK~l-------Les~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVF 331 (366)
..|++|. .+| |+.|..--.. +...+|.+.-+..+..... ..+.+..+. .+|.+.
T Consensus 25 ~~vl~f~~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~-~~~~~~~~~---~~p~~~ 86 (149)
T cd02970 25 PVVVVFYRGFG------CPFCREYLRALSKLLPELDALGVELVAVGPESPEKL-EAFDKGKFL---PFPVYA 86 (149)
T ss_pred CEEEEEECCCC------ChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHH-HHHHHhcCC---CCeEEE
Confidence 4455554 454 9999663333 3345777766665543332 234443332 567543
No 217
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=56.50 E-value=48 Score=26.45 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=16.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHH
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIES 296 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes 296 (366)
+..-|+.|..+| |+.|......|++
T Consensus 21 gk~vvl~F~~~w------C~~C~~~~p~l~~ 45 (114)
T cd02967 21 GRPTLLFFLSPT------CPVCKKLLPVIRS 45 (114)
T ss_pred CCeEEEEEECCC------CcchHhHhHHHHH
Confidence 344566666665 9999876655544
No 218
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=56.40 E-value=52 Score=27.58 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCCcEEEEEec-CCCCCCCChhHHHHH----HH---HHHCCCcEEEEEcCCCHHHHHHHHH
Q 038258 266 GENAVVIYTTT-LRGIRKTFEDCNKVR----SI---IESHQVQTLERDISMDSGFKEELRA 318 (366)
Q Consensus 266 ~~~kVVIYTkS-l~GiRktCp~C~kaK----~l---Les~gV~y~ErDVs~D~e~reELke 318 (366)
++..|+.|..+ | ||.|...- ++ +...+|.+..+....+...++.+.+
T Consensus 28 gk~~vv~f~~~~~------Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 28 GKPVVVNFWASAW------CPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp TSEEEEEEESTTT------SHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred CCeEEEEEEccCC------CCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 44456666667 6 99996443 33 3446799999998888775555544
No 219
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=56.18 E-value=18 Score=30.50 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=16.3
Q ss_pred cccEEEECCEEEeccHHHHhH
Q 038258 326 KVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 326 tVPqVFI~Gk~IGG~dEl~eL 346 (366)
.+|.+||||+++.|..++.++
T Consensus 136 ~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 136 GTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp SSSEEEETTCEEETTTSHHHH
T ss_pred cccEEEECCEEeCCCCCHHHH
Confidence 789999999999866544443
No 220
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=55.83 E-value=11 Score=37.04 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=39.0
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC----CCcEEEEEcC-------CCH-------HHHHHHHHHhCCCCccc
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH----QVQTLERDIS-------MDS-------GFKEELRALMESKQVKV 327 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~----gV~y~ErDVs-------~D~-------e~reELkeltG~~~~tV 327 (366)
...-|.+||.. +|--|--+-+.|.++ +|--..+.|+ .|. +.+..+.+.+|.+..-.
T Consensus 41 ~~~VVELfTSQ------GCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyT 114 (261)
T COG5429 41 PLGVVELFTSQ------GCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYT 114 (261)
T ss_pred CceEEEEeecC------CcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCC
Confidence 34567888888 588887777777654 2221112221 221 22233344456554567
Q ss_pred cEEEECCEE-Eecc
Q 038258 328 PLVFVKGRL-IGGV 340 (366)
Q Consensus 328 PqVFI~Gk~-IGG~ 340 (366)
||+||||+. +-|.
T Consensus 115 PQavvnGr~~~~Ga 128 (261)
T COG5429 115 PQAVVNGRVHANGA 128 (261)
T ss_pred chheeechhhhcCC
Confidence 999999953 4444
No 221
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=55.82 E-value=14 Score=32.31 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCcEEEEEc-CCCHHHHHHHHHH------hCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 288 NKVRSIIESHQVQTLERDI-SMDSGFKEELRAL------MESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 288 ~kaK~lLes~gV~y~ErDV-s~D~e~reELkel------tG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
..+..++.+.|+...+..- ..+..+++.+.+- .|- ..+|.++|||+++-|.+.+..+.+
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi--~gvPtfvv~g~~~~G~~~l~~~~~ 189 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGV--FGVPTFVVDGEMFWGQDRLDMLEE 189 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCC--CcCCeEEECCeeecccccHHHHHH
Confidence 4567788888886433222 2234444444322 243 489999999999988888766543
No 222
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=54.62 E-value=46 Score=25.80 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH----C----CCcEEEEEcCCC
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES----H----QVQTLERDISMD 309 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes----~----gV~y~ErDVs~D 309 (366)
.++.|..+| |+.|.+....|.+ + +|.+..+.++.+
T Consensus 4 ~ll~fwa~~------c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 4 VLLYFWASW------CPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp EEEEEE-TT------SHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 356666665 9999877766653 2 444555555544
No 223
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.52 E-value=45 Score=31.30 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=53.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCC--HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMD--SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D--~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
++.+|+... -+.|.++...++.+|+.|+.+.|+.. .....++.++.-.+ +||.+.-+|-.+-....|...
T Consensus 2 ~~~ly~~~~------s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~--kVP~l~d~~~~l~eS~AI~~Y 73 (226)
T KOG0867|consen 2 KLKLYGHLG------SPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLG--KVPALEDGGLTLWESHAILRY 73 (226)
T ss_pred CceEeecCC------CcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCC--CCCeEecCCeEEeeHHHHHHH
Confidence 467888884 68899999999999999999876644 23446666665554 899998888777766666554
Q ss_pred H
Q 038258 347 E 347 (366)
Q Consensus 347 ~ 347 (366)
.
T Consensus 74 l 74 (226)
T KOG0867|consen 74 L 74 (226)
T ss_pred H
Confidence 3
No 224
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=53.61 E-value=39 Score=30.25 Aligned_cols=36 Identities=6% Similarity=0.208 Sum_probs=23.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHH--------------CCCcEEEEEcCCCH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIES--------------HQVQTLERDISMDS 310 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes--------------~gV~y~ErDVs~D~ 310 (366)
-++-|..+| |+.|.+.--.|.. .++.+..++++.+.
T Consensus 28 vlL~FwAsW------CppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~ 77 (146)
T cd03008 28 LLLFFGAVV------SPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSE 77 (146)
T ss_pred EEEEEECCC------ChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCH
Confidence 344455565 9999887777754 14666666666553
No 225
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.84 E-value=27 Score=33.44 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHHCCCcEEEEEcCC--C-HHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHHH
Q 038258 283 TFEDCNKVRSIIESHQVQTLERDISM--D-SGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 283 tCp~C~kaK~lLes~gV~y~ErDVs~--D-~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~E 348 (366)
.|-| +||-.|.-+||.|+.+-|+. . ..+-.++++..-.. +||.+.|||..|-..-.+.+..+
T Consensus 15 SCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~--kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 15 SCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPME--KVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred cchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchh--hCCeEEECCEEeehHHHHHHHHH
Confidence 4654 66777777777776666653 3 22334677765443 89999999998876555555444
No 226
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=52.20 E-value=48 Score=35.13 Aligned_cols=52 Identities=12% Similarity=0.241 Sum_probs=36.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
.+++|+.. .|++|..++++|++. .|.+.++|...+.... +.+|-. .+|.+.|
T Consensus 369 ~l~~~~~~------~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~----~~~~v~--~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDG------SNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESE----TLPKIT--KLPTVAL 425 (555)
T ss_pred EEEEEECC------CchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhH----hhcCCC--cCCEEEE
Confidence 45556665 589999999999874 4778888877664433 333543 5788876
No 227
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=51.11 E-value=26 Score=28.77 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=37.8
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHH-HHHHC--------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEE-EE---CC
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRS-IIESH--------QVQTLERDISMDSGFKEELRALMESKQVKVPLV-FV---KG 334 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~-lLes~--------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqV-FI---~G 334 (366)
..++||..+- .|++|....+ +|..- ..-+...|+.. ++ ..++...++.. .+|.+ || +|
T Consensus 18 K~llv~~~~~-----~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e-~~~~~~~~~~~--~~P~~~~i~~~~g 88 (114)
T cd02958 18 KWLLVYLQSE-----DEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SE-GQRFLQSYKVD--KYPHIAIIDPRTG 88 (114)
T ss_pred ceEEEEEecC-----CcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-cc-HHHHHHHhCcc--CCCeEEEEeCccC
Confidence 3566776663 6999987643 44322 22234456654 23 23555555654 78988 45 35
Q ss_pred EEE---eccHHHHhH
Q 038258 335 RLI---GGVDEVMKL 346 (366)
Q Consensus 335 k~I---GG~dEl~eL 346 (366)
+.| -|+.+..++
T Consensus 89 ~~l~~~~G~~~~~~f 103 (114)
T cd02958 89 EVLKVWSGNITPEDL 103 (114)
T ss_pred cEeEEEcCCCCHHHH
Confidence 443 455444333
No 228
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=48.64 E-value=33 Score=33.97 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=35.6
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHC---------CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESH---------QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~---------gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
+..-++.|.++| |+.|......++.. +|.+..+|++.+.- .. .+- ..+|++++
T Consensus 364 ~~~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-----~~-~~i--~~~Pt~~~ 425 (462)
T TIGR01130 364 TKDVLVEFYAPW------CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-----PP-FEV--EGFPTIKF 425 (462)
T ss_pred CCeEEEEEECCC------CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-----CC-CCc--cccCEEEE
Confidence 556677788887 89998887777541 46778888875531 11 232 37898865
No 229
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=48.34 E-value=24 Score=30.32 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHHC------CCcEEEEEc
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIESH------QVQTLERDI 306 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~------gV~y~ErDV 306 (366)
.+...|++|+-. .||+|..+...+... .|.|..+-+
T Consensus 14 ~~~~~i~~f~D~------~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSY------GCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECC------CCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 355667777776 699998776666432 455554444
No 230
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=47.44 E-value=44 Score=27.35 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHHCCC--cEEEEEcCCCHHHHHHHHHHhCC---CCccccEEEECCE-EEeccHHHHhHHHh
Q 038258 283 TFEDCNKVRSIIESHQV--QTLERDISMDSGFKEELRALMES---KQVKVPLVFVKGR-LIGGVDEVMKLEEE 349 (366)
Q Consensus 283 tCp~C~kaK~lLes~gV--~y~ErDVs~D~e~reELkeltG~---~~~tVPqVFI~Gk-~IGG~dEl~eL~Es 349 (366)
.||.|....+++..+.- .+..+|+..+... ++.+..|. ...+.-.+.-+|+ ...|.+-+.++...
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ--ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhh--hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 59999999999998874 5888888543321 11111121 1112333333776 88889988887665
No 231
>PF05394 AvrB_AvrC: Avirulence protein; InterPro: IPR008798 This family consists of the avirulence B and C proteins from Pseudomonas syringae [] and related proteins from Xanthomonas campestris []. avrB and avrC encode these proteins, which are 36 and 39 kilodaltons in size respectively []. Pathogenic bacterial effectors suppress pathogen-associated molecular pattern (PAMP)-triggered host immunity, thereby promoting parasitism. AvrB suppresses PAMP-triggered immunity (PTI) through RAR1, which is for effector-triggered immunity (ETI) [].; GO: 0009405 pathogenesis; PDB: 2NUD_B 2NUN_A 1NH1_A.
Probab=45.79 E-value=7.4 Score=39.26 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=1.3
Q ss_pred Eeecccccccc
Q 038258 36 SLTSSTYGVLK 46 (366)
Q Consensus 36 sLTSsTYG~L~ 46 (366)
+--+++||.|.
T Consensus 25 ~~r~~~~g~L~ 35 (326)
T PF05394_consen 25 RRRAPRYGELP 35 (326)
T ss_dssp EE---------
T ss_pred hhhcccccccC
Confidence 66788999986
No 232
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=44.14 E-value=58 Score=29.51 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHH----HHCCCcEEEEEc
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSII----ESHQVQTLERDI 306 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lL----es~gV~y~ErDV 306 (366)
.-|+.|+.+| ||.|.+.-..| +..++.+.-+..
T Consensus 76 ~vvl~F~atw------Cp~C~~~lp~l~~~~~~~~~~vv~Is~ 112 (189)
T TIGR02661 76 PTLLMFTAPS------CPVCDKLFPIIKSIARAEETDVVMISD 112 (189)
T ss_pred EEEEEEECCC------ChhHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 3455566664 99997653333 455777666653
No 233
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.02 E-value=49 Score=28.80 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=24.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHH----HHHHHC-CCcEEEEEcCCCHH
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVR----SIIESH-QVQTLERDISMDSG 311 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK----~lLes~-gV~y~ErDVs~D~e 311 (366)
+|++|+-- .||||-.+. .+++.+ +|.++.+-+...+.
T Consensus 1 ~i~~~~D~------~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDF------ICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBT------TBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeC------CCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 36777777 599995554 444556 78877777765433
No 234
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=41.49 E-value=67 Score=28.26 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=29.5
Q ss_pred CCCChhHHH-----------HHHHHHHCCCc--EEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEE
Q 038258 281 RKTFEDCNK-----------VRSIIESHQVQ--TLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLI 337 (366)
Q Consensus 281 RktCp~C~k-----------aK~lLes~gV~--y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~I 337 (366)
.+||+.|.. ++..|..+||. |.++.+......++. ...|.|.|||+.|
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~---------~~S~~I~inG~pi 72 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQP---------LESPTIRINGRPI 72 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcc---------cCCCeeeECCEeh
Confidence 568998854 34446667877 455555432211111 2579999999975
No 235
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=41.34 E-value=2.1e+02 Score=28.04 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=52.6
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
.+=|.|.-.-++....-+|-.+++..|+.+|+.+.++++...+. +++...+.. .=.|+|+|=- .+.=++.++
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~--~~Ie~~l~~----~d~IyVgGGN--TF~LL~~lk 103 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL--AAIENKLMK----ADIIYVGGGN--TFNLLQELK 103 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH--HHHHHhhhh----ccEEEECCch--HHHHHHHHH
Confidence 33344443333455556789999999999999999999997764 556555443 2344444310 123456678
Q ss_pred HhCcHHHHhccC
Q 038258 348 EEGKLEILFDRI 359 (366)
Q Consensus 348 EsGeL~~LLk~~ 359 (366)
|.|.+.-+.+.+
T Consensus 104 e~gld~iIr~~v 115 (224)
T COG3340 104 ETGLDDIIRERV 115 (224)
T ss_pred HhCcHHHHHHHH
Confidence 888766555543
No 236
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=40.99 E-value=31 Score=33.78 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHH-hhhhhcccccccCCCcCCCCCCC--chhhHHHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHH
Q 038258 214 LFDPDLIANYERE-LSEGEEQIKRIISPTFSNRNCKS--SSESLLNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKV 290 (366)
Q Consensus 214 ~fdp~l~~~~~~~-l~~~~~~~~~~~s~~~~~~~~~~--~~~~~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~ka 290 (366)
+-|-+.+..||+. ++|.+..... .++...+.. +....++.+++. .....|||+...- +++.|..+
T Consensus 97 ~eDeefL~~yR~qRm~El~~~~~~----~~~fG~v~ei~~~e~~l~~ie~~---~~~~~VVVHiY~~-----~~~~C~~m 164 (265)
T PF02114_consen 97 EEDEEFLEQYREQRMQELKQKLQK----GPRFGEVYEIDSGEEFLDAIEKE---SKSTWVVVHIYEP-----GFPRCEIM 164 (265)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-----------SEEE--SHHHHHHHCCTS---STT-EEEEEEE-T-----TSCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh----CCcCceEEEccChhhHHHHHhcc---CCCcEEEEEEEeC-----CCchHHHH
Confidence 4467888888865 3333222110 111222211 223344444332 1223455444442 59999999
Q ss_pred HHHHHHC-----CCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE--CCEEEeccHHHHhHH----HhCcHHHHhccC
Q 038258 291 RSIIESH-----QVQTLERDISMDSGFKEELRALMESKQVKVPLVFV--KGRLIGGVDEVMKLE----EEGKLEILFDRI 359 (366)
Q Consensus 291 K~lLes~-----gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI--~Gk~IGG~dEl~eL~----EsGeL~~LLk~~ 359 (366)
-..|..+ .|+|..+....-+ + ...+.. ..+|+|+| +|..++.+-.+.++. ...+|+.+|...
T Consensus 165 n~~L~~LA~kyp~vKFvkI~a~~~~-~----~~~f~~--~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 165 NSCLECLARKYPEVKFVKIRASKCP-A----SENFPD--KNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp HHHHHHHHHH-TTSEEEEEEECGCC-T----TTTS-T--TC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred HHHHHHHHHhCCceEEEEEehhccC-c----ccCCcc--cCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9888764 5778877775322 1 111122 26899855 998888664443322 122577777776
Q ss_pred cc
Q 038258 360 PK 361 (366)
Q Consensus 360 ~~ 361 (366)
+.
T Consensus 238 G~ 239 (265)
T PF02114_consen 238 GV 239 (265)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 237
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=40.22 E-value=71 Score=25.62 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=23.0
Q ss_pred ChhHHHHH----HHH---HHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEE
Q 038258 284 FEDCNKVR----SII---ESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVF 331 (366)
Q Consensus 284 Cp~C~kaK----~lL---es~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVF 331 (366)
|+.|...- .+. +..++.+..+..+...+. +++.+..+. .+|.+.
T Consensus 38 c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~-~~~~~~~~~---~~~~~~ 88 (124)
T PF00578_consen 38 CPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEI-KQFLEEYGL---PFPVLS 88 (124)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHH-HHHHHHHTC---SSEEEE
T ss_pred ccccccchhHHHHHhhhhccceEEeeecccccccch-hhhhhhhcc---cccccc
Confidence 99994433 322 345677777777544433 334333332 355544
No 238
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=40.16 E-value=39 Score=29.12 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=33.5
Q ss_pred CChhH-HHHHHHHHHCCCcEEEEEcCC--CHHHHHHHHHHhCCCCccccEEEECCEEEe
Q 038258 283 TFEDC-NKVRSIIESHQVQTLERDISM--DSGFKEELRALMESKQVKVPLVFVKGRLIG 338 (366)
Q Consensus 283 tCp~C-~kaK~lLes~gV~y~ErDVs~--D~e~reELkeltG~~~~tVPqVFI~Gk~IG 338 (366)
+|..| .+++++|...||+...+-+.. +.+.. ...+++|.. =.|-.||+|.|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~-I~sd~~~~~----~sIt~NG~H~g 73 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF-IYSDRLGPQ----ESITTNGRHYG 73 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce-ehhhhhcCC----cceeeCCEEEE
Confidence 69999 778999999999987777764 22110 223333321 35677888765
No 239
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=39.57 E-value=1.1e+02 Score=33.07 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=17.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE 295 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe 295 (366)
++.-|+-|+.+| |+.|...-..|+
T Consensus 56 GKpVvV~FWATW------CppCk~emP~L~ 79 (521)
T PRK14018 56 DKPTLIKFWASW------CPLCLSELGETE 79 (521)
T ss_pred CCEEEEEEEcCC------CHHHHHHHHHHH
Confidence 334567777887 999988766664
No 240
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=39.55 E-value=28 Score=28.15 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=15.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIE 295 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLe 295 (366)
++..|+.|..+ .|+.|...-..|.
T Consensus 20 ~k~~vl~F~~~------~C~~C~~~~~~l~ 43 (123)
T cd03011 20 GKPVLVYFWAT------WCPVCRFTSPTVN 43 (123)
T ss_pred CCEEEEEEECC------cChhhhhhChHHH
Confidence 33455666655 4999987755554
No 241
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.74 E-value=47 Score=31.25 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=37.9
Q ss_pred CCCCCcEEEEEecCCCCCCCChhHHHHHHHHHH------C---CCcEEEEEcCCCHH------------HHHHHHHHhCC
Q 038258 264 PGGENAVVIYTTTLRGIRKTFEDCNKVRSIIES------H---QVQTLERDISMDSG------------FKEELRALMES 322 (366)
Q Consensus 264 p~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes------~---gV~y~ErDVs~D~e------------~reELkeltG~ 322 (366)
|.+.--+.||... +|+||++.+.-+.. + ++.+.++++..... --+||.+..+-
T Consensus 40 ~~~Kylllmfes~------~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 40 PNDKYLLLMFESN------GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred ccCcEEEEEEcCC------CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 4555567777777 79999988765431 1 24455666653210 12567666665
Q ss_pred CCccccEE-EECCE
Q 038258 323 KQVKVPLV-FVKGR 335 (366)
Q Consensus 323 ~~~tVPqV-FI~Gk 335 (366)
+ +.|.+ |.+++
T Consensus 114 r--stPtfvFfdk~ 125 (182)
T COG2143 114 R--STPTFVFFDKT 125 (182)
T ss_pred c--cCceEEEEcCC
Confidence 5 67877 44543
No 242
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=38.47 E-value=85 Score=27.98 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=39.7
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHH----HCC---CcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEEec
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSIIE----SHQ---VQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLIGG 339 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lLe----s~g---V~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~IGG 339 (366)
..+||..+ .-..+|.+..+--+|. +++ +.+..+|++.++. |...+|-. .+|.+ |=||+++|-
T Consensus 36 ~~vl~~~g---dp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~----LA~~fgV~--siPTLl~FkdGk~v~~ 106 (132)
T PRK11509 36 DGVVLLSS---DPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA----IGDRFGVF--RFPATLVFTGGNYRGV 106 (132)
T ss_pred cEEEEeCC---CCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH----HHHHcCCc--cCCEEEEEECCEEEEE
Confidence 35555544 3445777765555554 443 6788888887755 44555755 78988 449998864
Q ss_pred c
Q 038258 340 V 340 (366)
Q Consensus 340 ~ 340 (366)
.
T Consensus 107 i 107 (132)
T PRK11509 107 L 107 (132)
T ss_pred E
Confidence 3
No 243
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=38.33 E-value=63 Score=23.69 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHH----C--CCcEEEEEcC-CCHHHHHHHH
Q 038258 283 TFEDCNKVRSIIES----H--QVQTLERDIS-MDSGFKEELR 317 (366)
Q Consensus 283 tCp~C~kaK~lLes----~--gV~y~ErDVs-~D~e~reELk 317 (366)
.|++|..+...|.. + .+.+..+|+. .+....+.+.
T Consensus 43 ~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (127)
T COG0526 43 WCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFG 84 (127)
T ss_pred cCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHh
Confidence 39999988777764 3 3678888886 5555544443
No 244
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=38.03 E-value=1.8e+02 Score=25.16 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=41.2
Q ss_pred CCCcEEEEEe--cCCCCCCCChhHHHHHHHHHHC--CCcEEEEEcCCCHH-HHHHHHHHhCCCCccccEE--EECCE
Q 038258 266 GENAVVIYTT--TLRGIRKTFEDCNKVRSIIESH--QVQTLERDISMDSG-FKEELRALMESKQVKVPLV--FVKGR 335 (366)
Q Consensus 266 ~~~kVVIYTk--Sl~GiRktCp~C~kaK~lLes~--gV~y~ErDVs~D~e-~reELkeltG~~~~tVPqV--FI~Gk 335 (366)
...-+|-|.. +|||. -|+|.++-.-+... .|.+-++|++...+ .-.+|.+..|-....+|+| |.+|.
T Consensus 18 ~~~vlV~F~A~~Pwc~k---~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~ 91 (116)
T cd03007 18 FKYSLVKFDTAYPYGEK---HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGD 91 (116)
T ss_pred CCcEEEEEeCCCCCCCC---hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCC
Confidence 3456888999 77542 24888776555432 37788888853221 1256777766422268987 55773
No 245
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=37.51 E-value=22 Score=31.07 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCcEEEEEcC-CCHHHHHHHHHH------hCCCCccccEEEECCE-EEeccHHHHhHH
Q 038258 288 NKVRSIIESHQVQTLERDIS-MDSGFKEELRAL------MESKQVKVPLVFVKGR-LIGGVDEVMKLE 347 (366)
Q Consensus 288 ~kaK~lLes~gV~y~ErDVs-~D~e~reELkel------tG~~~~tVPqVFI~Gk-~IGG~dEl~eL~ 347 (366)
..+..++.+.|+...+++-. .++..++.+.+- .|- ..+|.++|||+ .+-|.+.+..+.
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv--~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGV--FGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTC--SSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCC--cccCEEEECCEEEEECCCCHHHHH
Confidence 44677777778765443332 334444444322 244 38999999999 677887665554
No 246
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=37.45 E-value=1e+02 Score=31.15 Aligned_cols=127 Identities=15% Similarity=0.154 Sum_probs=74.9
Q ss_pred CCCCC---hHHHHHHHHHhhhhhcccccccCC---CcCCCCCCCchhhHHHHhhhcCCCCCCCcEEEEEecCCCCCCCCh
Q 038258 212 SPLFD---PDLIANYERELSEGEEQIKRIISP---TFSNRNCKSSSESLLNVYDKKCPPGGENAVVIYTTTLRGIRKTFE 285 (366)
Q Consensus 212 ~~~fd---p~l~~~~~~~l~~~~~~~~~~~s~---~~~~~~~~~~~~~~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp 285 (366)
...|| .++-.+|+-|+..-.........+ .+-.... +..++. +..++.|-....+-+.||.-+ .|.
T Consensus 3 G~iF~~~~~~~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~-~~~dsf-~~~~~~C~l~~~GV~AIfGp~------~~~ 74 (372)
T cd06387 3 GGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHL-DSSNSF-SVTNAFCSQFSRGVYAIFGFY------DQM 74 (372)
T ss_pred ceeecCCcHHHHHHHHHHHHHhcccccccccCeEEEEeeEEe-cCCChH-HHHHHHHHHhhcccEEEEecC------CHh
Confidence 44565 567789999998754321000000 0000111 122333 566788987888889999988 577
Q ss_pred hHHHHHHHHHHCCCcEEEE----------EcCCCHHHHHHHHHHhC-CCCccccEEEECCEEEeccHHHHhH
Q 038258 286 DCNKVRSIIESHQVQTLER----------DISMDSGFKEELRALME-SKQVKVPLVFVKGRLIGGVDEVMKL 346 (366)
Q Consensus 286 ~C~kaK~lLes~gV~y~Er----------DVs~D~e~reELkeltG-~~~~tVPqVFI~Gk~IGG~dEl~eL 346 (366)
--..+..+...+.|+|... -|.+.|.+-.++.++.. .+|..+=.||-+...++...++.+.
T Consensus 75 s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~Wr~~~~iYd~d~gl~~Lq~L~~~ 146 (372)
T cd06387 75 SMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKWEKFVYLYDTERGFSILQAIMEA 146 (372)
T ss_pred HHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcCCCEEEEEecCchhHHHHHHHHHh
Confidence 7788999999999998763 33445655555555431 1244777777555545555554443
No 247
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=36.10 E-value=93 Score=28.32 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCH
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDS 310 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~ 310 (366)
|.|.+-+.+ .-+.|++++..|+.+||.|+.+-++.|.
T Consensus 3 V~Ii~gs~S----D~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 3 VAIIMGSTS----DLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp EEEEESSGG----GHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred EEEEeCCHH----HHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 445544432 4678999999999999999998888773
No 248
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=35.21 E-value=17 Score=28.55 Aligned_cols=12 Identities=50% Similarity=0.742 Sum_probs=9.6
Q ss_pred Cccccccccchh
Q 038258 2 MGCVSSKHVKRE 13 (366)
Q Consensus 2 MGCvss~l~~~~ 13 (366)
|||..||+=+.+
T Consensus 1 MGC~~SK~d~ee 12 (60)
T PF04783_consen 1 MGCSQSKLDDEE 12 (60)
T ss_pred CCCCcccccCcH
Confidence 999999976544
No 249
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=34.54 E-value=1.1e+02 Score=26.14 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=15.0
Q ss_pred ChhHHH-------HHHHHHHCCCcEEEEEcCC
Q 038258 284 FEDCNK-------VRSIIESHQVQTLERDISM 308 (366)
Q Consensus 284 Cp~C~k-------aK~lLes~gV~y~ErDVs~ 308 (366)
|+.|.. ..+-|...++.+.-+.++.
T Consensus 43 ~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 43 TPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 788843 3334455677776666653
No 250
>PTZ00056 glutathione peroxidase; Provisional
Probab=34.23 E-value=1.2e+02 Score=27.97 Aligned_cols=35 Identities=6% Similarity=0.028 Sum_probs=20.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHH----HHHHHH---HCCCcEEEEEc
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNK----VRSIIE---SHQVQTLERDI 306 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~k----aK~lLe---s~gV~y~ErDV 306 (366)
++--|+.|..+| |+.|.+ +.++.+ ..|+.+.-+.+
T Consensus 39 Gkvvlv~fwAsw------C~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 39 NKVLMITNSASK------CGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCEEEEEEECCC------CCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 334466666665 889964 333333 34676666654
No 251
>smart00594 UAS UAS domain.
Probab=32.58 E-value=1.7e+02 Score=24.62 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=26.4
Q ss_pred CChhHHHHHH----------HHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEE
Q 038258 283 TFEDCNKVRS----------IIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFV 332 (366)
Q Consensus 283 tCp~C~kaK~----------lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI 332 (366)
.|++|....+ +|+. .+-+-..|+..... .++...++.. ++|.+.+
T Consensus 38 ~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg--~~l~~~~~~~--~~P~~~~ 92 (122)
T smart00594 38 DSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEG--QRVSQFYKLD--SFPYVAI 92 (122)
T ss_pred CCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhH--HHHHHhcCcC--CCCEEEE
Confidence 4999976433 4433 33344567765544 3565666654 7898854
No 252
>PLN02412 probable glutathione peroxidase
Probab=32.33 E-value=1.4e+02 Score=26.44 Aligned_cols=32 Identities=3% Similarity=0.071 Sum_probs=17.0
Q ss_pred cEEEEEecCCCCCCCChhHHH----HHHHH---HHCCCcEEEEEc
Q 038258 269 AVVIYTTTLRGIRKTFEDCNK----VRSII---ESHQVQTLERDI 306 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~k----aK~lL---es~gV~y~ErDV 306 (366)
-|+.|..+| |+.|.+ +.++. ...|+.+.-+..
T Consensus 32 vlv~f~a~~------C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 32 LLIVNVASK------CGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred EEEEEeCCC------CCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 344466665 888874 22222 334566555554
No 253
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=31.66 E-value=28 Score=29.89 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCcEEEEEcCC-CHHHHHHHH------HHhCCCCccccEEEECCEEEeccH
Q 038258 288 NKVRSIIESHQVQTLERDISM-DSGFKEELR------ALMESKQVKVPLVFVKGRLIGGVD 341 (366)
Q Consensus 288 ~kaK~lLes~gV~y~ErDVs~-D~e~reELk------eltG~~~~tVPqVFI~Gk~IGG~d 341 (366)
..+..++...|+....++-.+ +..+.+.+. ...|- ..+|.++|||+++-+..
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi--~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKI--TGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCC--CCCCeEEECCEEEEChh
Confidence 346666667776543222111 222222222 22243 47999999999865443
No 254
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=31.17 E-value=49 Score=28.92 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCcEEEEEecCCC--CCCCChhHHHHHHHHH----H--CCCcEEEEEcCCCHHHHH---HHHHHhCCCCccccEEEE
Q 038258 267 ENAVVIYTTTLRG--IRKTFEDCNKVRSIIE----S--HQVQTLERDISMDSGFKE---ELRALMESKQVKVPLVFV 332 (366)
Q Consensus 267 ~~kVVIYTkSl~G--iRktCp~C~kaK~lLe----s--~gV~y~ErDVs~D~e~re---ELkeltG~~~~tVPqVFI 332 (366)
...++||..+... -+.=||+|..|.-+++ . .+..+..+.|...+.+++ .++.---.+...+|+++-
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 3566666654321 1222999999886655 3 256678888875444332 333311111237899974
No 255
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=31.00 E-value=42 Score=26.19 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=14.3
Q ss_pred EEECCEEEeccHHHHhHHH
Q 038258 330 VFVKGRLIGGVDEVMKLEE 348 (366)
Q Consensus 330 VFI~Gk~IGG~dEl~eL~E 348 (366)
||+||.+||=.++-.+|.+
T Consensus 1 VFlNG~~iG~~~~p~~l~~ 19 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELVK 19 (63)
T ss_dssp EEETTEEEEEESSHHHHHH
T ss_pred CEECCEEEEEEcCHHHHHH
Confidence 7999999998766544443
No 256
>PHA03075 glutaredoxin-like protein; Provisional
Probab=30.83 E-value=53 Score=29.26 Aligned_cols=32 Identities=6% Similarity=0.229 Sum_probs=25.2
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEE
Q 038258 267 ENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLER 304 (366)
Q Consensus 267 ~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~Er 304 (366)
++.+++|.+++ |+-|+-+..+|..+.=.|+..
T Consensus 2 K~tLILfGKP~------C~vCe~~s~~l~~ledeY~il 33 (123)
T PHA03075 2 KKTLILFGKPL------CSVCESISEALKELEDEYDIL 33 (123)
T ss_pred CceEEEeCCcc------cHHHHHHHHHHHHhhccccEE
Confidence 35789999997 999999999998776555433
No 257
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.74 E-value=83 Score=31.59 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=40.9
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHHCC-----CcEEEEEcCCCHHHHHHHHHHhCCCCccccEE--EECCEEE
Q 038258 265 GGENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQ-----VQTLERDISMDSGFKEELRALMESKQVKVPLV--FVKGRLI 337 (366)
Q Consensus 265 ~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~g-----V~y~ErDVs~D~e~reELkeltG~~~~tVPqV--FI~Gk~I 337 (366)
+.+--||=||.+| |.-|.++--++..+- .-|..+||+.-... ..-.|-. .+|+. |.||.-|
T Consensus 20 g~k~v~Vdfta~w------CGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~t----aa~~gV~--amPTFiff~ng~ki 87 (288)
T KOG0908|consen 20 GGKLVVVDFTASW------CGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGT----AATNGVN--AMPTFIFFRNGVKI 87 (288)
T ss_pred CceEEEEEEEecc------cchHHhhhhHHHHhhhhCcccEEEEEeHHHhhch----hhhcCcc--cCceEEEEecCeEe
Confidence 3445677799998 889999999998763 44788888532211 1112433 67876 7799765
Q ss_pred e
Q 038258 338 G 338 (366)
Q Consensus 338 G 338 (366)
-
T Consensus 88 d 88 (288)
T KOG0908|consen 88 D 88 (288)
T ss_pred e
Confidence 3
No 258
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=29.06 E-value=33 Score=31.52 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCcEEEEEcCCC-HHHHHH------HHHHhCCCCccccEEEECCEEEeccH
Q 038258 288 NKVRSIIESHQVQTLERDISMD-SGFKEE------LRALMESKQVKVPLVFVKGRLIGGVD 341 (366)
Q Consensus 288 ~kaK~lLes~gV~y~ErDVs~D-~e~reE------LkeltG~~~~tVPqVFI~Gk~IGG~d 341 (366)
..++.++...|+.-.+++-..+ ..+++. +.+..|-. .+|.++|||+|+=+..
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~--gtPtfiInGky~v~~~ 182 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLR--GVPAMFVNGKYMVNNQ 182 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCC--CCCEEEECCEEEEccc
Confidence 4577778888886433332222 222222 22233543 8999999999965433
No 259
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=28.38 E-value=1.4e+02 Score=25.65 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=16.9
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHH-------HCCCcEEEEEc
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIE-------SHQVQTLERDI 306 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLe-------s~gV~y~ErDV 306 (366)
.-|+.|..+| |+ |..--..|+ ..|+.+.-+.+
T Consensus 24 ~vvl~fwatw------C~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 24 VLLIVNVASK------CG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred EEEEEEEcCC------CC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 3455566665 88 865333333 24565555544
No 260
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.82 E-value=84 Score=27.48 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=19.2
Q ss_pred cEEEEEecCCCCCCCChhHHH----HHHHHHHC--CCcEEEE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNK----VRSIIESH--QVQTLER 304 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~k----aK~lLes~--gV~y~Er 304 (366)
+|.+|+-.+ ||||-. ++++.+.+ ++.+..+
T Consensus 2 ~i~~~~D~~------cp~c~~~~~~l~~l~~~~~~~~~v~~~ 37 (193)
T cd03025 2 ELYYFIDPL------CGWCYGFEPLLEKLKEEYGGGIEVELH 37 (193)
T ss_pred eEEEEECCC------CchhhCchHHHHHHHHHhCCCceEEEE
Confidence 477888884 999954 44455555 5655433
No 261
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=27.31 E-value=2e+02 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=13.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHH
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSII 294 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lL 294 (366)
++--|+.|..+| |+.|.+.-..|
T Consensus 23 gk~vvl~F~a~~------C~~C~~~~p~l 45 (126)
T cd03012 23 GKVVLLDFWTYC------CINCLHTLPYL 45 (126)
T ss_pred CCEEEEEEECCC------CccHHHHHHHH
Confidence 333455555554 99997654333
No 262
>PTZ00256 glutathione peroxidase; Provisional
Probab=27.28 E-value=1.7e+02 Score=26.28 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=18.3
Q ss_pred EEEEecCCCCCCCChhHHH----HHHHHH---HCCCcEEEEEc
Q 038258 271 VIYTTTLRGIRKTFEDCNK----VRSIIE---SHQVQTLERDI 306 (366)
Q Consensus 271 VIYTkSl~GiRktCp~C~k----aK~lLe---s~gV~y~ErDV 306 (366)
++|..+| |+.|.+ +.++.+ ..|+.+.-+.+
T Consensus 46 v~n~atw------Cp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 46 VVNVACK------CGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred EEEECCC------CCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 3466776 899975 333333 45677766664
No 263
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=26.14 E-value=1.6e+02 Score=28.40 Aligned_cols=35 Identities=6% Similarity=0.025 Sum_probs=21.3
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHH-------HHHHHCCCcEEEEEc
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVR-------SIIESHQVQTLERDI 306 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK-------~lLes~gV~y~ErDV 306 (366)
++.-|+.|+.+| |+.|..-- +-+...|+.+.-++.
T Consensus 99 GK~vvl~FwAsw------Cp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 99 GKVLLIVNVASK------CGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCeEEEEEEcCC------CcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 445567777776 89996422 223345677766665
No 264
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=25.77 E-value=5e+02 Score=25.99 Aligned_cols=94 Identities=14% Similarity=0.213 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhhhhhcccccccCCCcCCCCCCCchhhHHHHhhhcCCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHH
Q 038258 217 PDLIANYERELSEGEEQIKRIISPTFSNRNCKSSSESLLNVYDKKCPPGGENAVVIYTTTLRGIRKTFEDCNKVRSIIES 296 (366)
Q Consensus 217 p~l~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp~C~kaK~lLes 296 (366)
+.-...|.++|++.....-. ....+.+.+-++ ....+|+-+-- |-+-|-=.-+|++|+.
T Consensus 52 ~~y~~lf~~aL~~~~~rlA~-------------~v~~la~~i~~~----~g~~~vLVSLa----RAGtPiGVLlkR~l~~ 110 (257)
T PF11202_consen 52 AEYMDLFHQALAQNAQRLAR-------------AVGVLAELIIAR----RGQPIVLVSLA----RAGTPIGVLLKRYLRR 110 (257)
T ss_pred HHHHHHHHHHHHHhHHHHHH-------------HHHHHHHHHHHh----cCCCeEEEEee----ccCCcHHHHHHHHHHH
Confidence 44678888888875432211 112232333333 33466776655 5578899999999998
Q ss_pred C--CCc---E---EEEEcCCCHHHHHHHHHHhCCCCccccEEEECCE
Q 038258 297 H--QVQ---T---LERDISMDSGFKEELRALMESKQVKVPLVFVKGR 335 (366)
Q Consensus 297 ~--gV~---y---~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk 335 (366)
. |+. | ..+|-..|....+.+.+..+ .-..+||||=
T Consensus 111 ~~~g~~~~HYsISIIRdRGID~~AL~~I~~~H~----~~~ivFVDGW 153 (257)
T PF11202_consen 111 MKYGLDLPHYSISIIRDRGIDENALRYILARHP----PESIVFVDGW 153 (257)
T ss_pred hhcCCCCCceeEEEecCCCCCHHHHHHHHHhCC----CcceEEEecC
Confidence 4 766 3 55666677776666655433 4589999983
No 265
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=25.49 E-value=2.1e+02 Score=23.49 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=16.1
Q ss_pred ChhHHH-------HHHHHHHCCCcEEEEEcCCCHHH
Q 038258 284 FEDCNK-------VRSIIESHQVQTLERDISMDSGF 312 (366)
Q Consensus 284 Cp~C~k-------aK~lLes~gV~y~ErDVs~D~e~ 312 (366)
||.|.. +.+-|...++.+.-+.++.....
T Consensus 36 cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~ 71 (140)
T cd03017 36 TPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESH 71 (140)
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 888854 22333455777666666533333
No 266
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.76 E-value=61 Score=28.66 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=15.8
Q ss_pred ccccEEEECCEE-EeccHHHHhH
Q 038258 325 VKVPLVFVKGRL-IGGVDEVMKL 346 (366)
Q Consensus 325 ~tVPqVFI~Gk~-IGG~dEl~eL 346 (366)
..+|.++|||++ +.|+.....+
T Consensus 174 ~G~Pt~vv~g~~~~~G~~~~~~~ 196 (201)
T cd03024 174 SGVPFFVFNGKYAVSGAQPPEVF 196 (201)
T ss_pred CcCCEEEECCeEeecCCCCHHHH
Confidence 479999999885 5777554433
No 267
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=24.43 E-value=2e+02 Score=26.52 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEEcCCCH--HHHHHHH-HHh-----------CC---------CCccccEEEE--CCEEE
Q 038258 283 TFEDCNKVRSIIESHQVQTLERDISMDS--GFKEELR-ALM-----------ES---------KQVKVPLVFV--KGRLI 337 (366)
Q Consensus 283 tCp~C~kaK~lLes~gV~y~ErDVs~D~--e~reELk-elt-----------G~---------~~~tVPqVFI--~Gk~I 337 (366)
.-+.++++..+|+.+||+|+.+=.+.|. +...++. +.- |. ...++|+|=+ .....
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l 89 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKAL 89 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCCccCC
Confidence 5788999999999999999999888873 3333332 210 11 1246788733 45567
Q ss_pred eccHHHHhHHH
Q 038258 338 GGVDEVMKLEE 348 (366)
Q Consensus 338 GG~dEl~eL~E 348 (366)
+|.|.+..+.+
T Consensus 90 ~G~daLlS~vq 100 (156)
T TIGR01162 90 SGLDSLLSIVQ 100 (156)
T ss_pred CCHHHHHHHhc
Confidence 88888777666
No 268
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=23.90 E-value=4.2e+02 Score=24.00 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=34.3
Q ss_pred CChhHHHHHHHHHHCC--CcEEEEEcCCCHHHHHHHHHHhCCCCcc-ccEEEE-CCEEEeccHHHHhH
Q 038258 283 TFEDCNKVRSIIESHQ--VQTLERDISMDSGFKEELRALMESKQVK-VPLVFV-KGRLIGGVDEVMKL 346 (366)
Q Consensus 283 tCp~C~kaK~lLes~g--V~y~ErDVs~D~e~reELkeltG~~~~t-VPqVFI-~Gk~IGG~dEl~eL 346 (366)
.|+.|.....+|.++. -.|...++...+ -.++.+..|..... -=.+|+ +|+..-|.+-+.+.
T Consensus 17 ~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~--g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 17 VCPLCDGWVRFLIRRDQGGRIRFAALQSEP--GQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred cchhHHHHHHHHHHhccCCcEEEEeccCch--hhhHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 3999988888887764 346666664333 34455555543111 123344 55555556555443
No 269
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.58 E-value=1.7e+02 Score=22.71 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=23.8
Q ss_pred cEEEEEecCCCCCCCChhH-HHHHHHHHHCC-CcEEEEEcC
Q 038258 269 AVVIYTTTLRGIRKTFEDC-NKVRSIIESHQ-VQTLERDIS 307 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C-~kaK~lLes~g-V~y~ErDVs 307 (366)
+..++...+ +|.+| ..++..|.... |.-..+|+.
T Consensus 3 ~~~l~v~~M-----tC~~C~~~V~~al~~v~gv~~v~v~l~ 38 (71)
T COG2608 3 KTTLKVEGM-----TCGHCVKTVEKALEEVDGVASVDVDLE 38 (71)
T ss_pred eEEEEECCc-----CcHHHHHHHHHHHhcCCCeeEEEEEcc
Confidence 455666666 79999 88999999875 554444443
No 270
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.19 E-value=89 Score=23.43 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=27.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHhCCCCccccEEEECCE
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALMESKQVKVPLVFVKGR 335 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkeltG~~~~tVPqVFI~Gk 335 (366)
+.||+... =-.+..++.+|++.||++...|-.+... .-. .|.. ..+.|+|...
T Consensus 1 ~~l~~~~~------~~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~g~~--~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGD------PIEAELIKGLLEENGIPAFVKNEHMSGY----AGE-PGTG--GQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--------HHHHHHHHHHHHHTT--EE--S----SS--------S--S--SSEEEEEEGG
T ss_pred CEEEEcCC------HHHHHHHHHHHHhCCCcEEEECCccchh----hcc-cCcc--CceEEEECHH
Confidence 35666662 3468999999999999999887764432 111 2332 3488888754
No 271
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.69 E-value=2.1e+02 Score=20.76 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=20.1
Q ss_pred CChhH-HHHHHHHHHC-CCcEEEEEcC
Q 038258 283 TFEDC-NKVRSIIESH-QVQTLERDIS 307 (366)
Q Consensus 283 tCp~C-~kaK~lLes~-gV~y~ErDVs 307 (366)
+|..| .++++.|... ||.-..+|+.
T Consensus 8 ~C~~C~~~v~~~l~~~~GV~~v~vd~~ 34 (62)
T PF00403_consen 8 TCEGCAKKVEKALSKLPGVKSVKVDLE 34 (62)
T ss_dssp TSHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred ccHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 69999 7788888876 8877777775
No 272
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=22.66 E-value=2.4e+02 Score=23.13 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=13.9
Q ss_pred ChhHHHHHHH-------HHHCCCcEEEEEcC
Q 038258 284 FEDCNKVRSI-------IESHQVQTLERDIS 307 (366)
Q Consensus 284 Cp~C~kaK~l-------Les~gV~y~ErDVs 307 (366)
|+.|...-.- |+..++.+..+.++
T Consensus 35 c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 35 TPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 8888543222 22457777777665
No 273
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=22.58 E-value=3.2e+02 Score=22.79 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=20.9
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHH----HHC-CCcEEEEEcCC
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSII----ESH-QVQTLERDISM 308 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lL----es~-gV~y~ErDVs~ 308 (366)
++..|+.|..+++ |+.|..--..| +.+ ++.+.-+.++.
T Consensus 26 gk~vvl~f~~~~~-----c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~ 68 (143)
T cd03014 26 GKVKVISVFPSID-----TPVCATQTKRFNKEAAKLDNTVVLTISADL 68 (143)
T ss_pred CCeEEEEEEcCCC-----CCcCHHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 3344555566653 79996544333 332 66666666543
No 274
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=22.51 E-value=3e+02 Score=25.73 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=28.6
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHH---HHCCCcE------EEEEcCCC
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSII---ESHQVQT------LERDISMD 309 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lL---es~gV~y------~ErDVs~D 309 (366)
++-.|+-|..+| |+.|+.=.-+| ...|+++ .-+|++.+
T Consensus 59 GKV~lvn~~Asw------c~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 59 GKVRVVHHIAGR------TSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCEEEEEEEecC------CChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 667889999998 88996655444 4568888 88887754
No 275
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=22.44 E-value=3.9e+02 Score=21.04 Aligned_cols=48 Identities=8% Similarity=0.089 Sum_probs=37.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcCCCHHHHHHHHHHh
Q 038258 266 GENAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDISMDSGFKEELRALM 320 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs~D~e~reELkelt 320 (366)
...+++||+.+ ...|..+...|...++.+..+.=.++...+.++.+..
T Consensus 27 ~~~~~lvf~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 74 (131)
T cd00079 27 KGGKVLIFCPS-------KKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF 74 (131)
T ss_pred CCCcEEEEeCc-------HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence 45689999888 5789999999998888888777777766666665544
No 276
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=22.29 E-value=3.4e+02 Score=27.18 Aligned_cols=126 Identities=10% Similarity=0.129 Sum_probs=74.0
Q ss_pred CCCCC---hHHHHHHHHHhhhhhcccccccCC---CcCCCCCCCchhhHHHHhhhcCCCCCCCcEEEEEecCCCCCCCCh
Q 038258 212 SPLFD---PDLIANYERELSEGEEQIKRIISP---TFSNRNCKSSSESLLNVYDKKCPPGGENAVVIYTTTLRGIRKTFE 285 (366)
Q Consensus 212 ~~~fd---p~l~~~~~~~l~~~~~~~~~~~s~---~~~~~~~~~~~~~~l~~~e~~cpp~~~~kVVIYTkSl~GiRktCp 285 (366)
...|| .....+|+-|+............+ .+..+.. +..++. +..++.|-....+-+.|+.-. ++.
T Consensus 3 G~if~~~~~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~-~~~dsf-~~~~~~C~~~~~gV~AI~Gp~------ss~ 74 (371)
T cd06388 3 GGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNI-ETANSF-AVTNAFCSQYSRGVFAIFGLY------DKR 74 (371)
T ss_pred ceeecCCchHHHHHHHHHHHHhhccccccccceEEeeeeeec-CCCChh-HHHHHHHHHHhCCceEEEecC------CHH
Confidence 34565 456789999987754321000000 0001111 122233 566788877788888888888 578
Q ss_pred hHHHHHHHHHHCCCcEEEEEc----------CCCHHHHHHHH---HHhCCCCccccEEEECCEEEeccHHHHhHH
Q 038258 286 DCNKVRSIIESHQVQTLERDI----------SMDSGFKEELR---ALMESKQVKVPLVFVKGRLIGGVDEVMKLE 347 (366)
Q Consensus 286 ~C~kaK~lLes~gV~y~ErDV----------s~D~e~reELk---eltG~~~~tVPqVFI~Gk~IGG~dEl~eL~ 347 (366)
.|..+..+.+.++|++..... .+.+.+..++. +..|+ .++=.|+-.+..++..+++.+..
T Consensus 75 ~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~w--k~vaiiYd~~~~~~~lq~l~~~~ 147 (371)
T cd06388 75 SVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEW--NRFVFLYDTDRGYSILQAIMEKA 147 (371)
T ss_pred HHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhcCc--eEEEEEecCCccHHHHHHHHHhh
Confidence 899999999999999875432 22333333332 33354 37777776566566666665543
No 277
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=22.12 E-value=3.8e+02 Score=25.51 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=23.6
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEc
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDI 306 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDV 306 (366)
.++.|+..+.+|....-..-.+++.+|+++++.|..+..
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t 40 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVT 40 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 356666666555433334456677777788877665443
No 278
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=21.64 E-value=1.4e+02 Score=24.56 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=11.0
Q ss_pred CCCcEEEEEecCCCCCCCChh-HHH
Q 038258 266 GENAVVIYTTTLRGIRKTFED-CNK 289 (366)
Q Consensus 266 ~~~kVVIYTkSl~GiRktCp~-C~k 289 (366)
++-.|++|..++ |+. |.+
T Consensus 22 gk~~vl~f~~~~------C~~~C~~ 40 (142)
T cd02968 22 GKPVLVYFGYTH------CPDVCPT 40 (142)
T ss_pred CCEEEEEEEcCC------CcccCHH
Confidence 334566666664 887 864
No 279
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.37 E-value=2.3e+02 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=13.5
Q ss_pred ChhHHHHHHHH-------HHCCCcEEEEEcC
Q 038258 284 FEDCNKVRSII-------ESHQVQTLERDIS 307 (366)
Q Consensus 284 Cp~C~kaK~lL-------es~gV~y~ErDVs 307 (366)
|+.|...-..| ...++.+.-+.++
T Consensus 41 c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 41 TPVCTKELCALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 88886433222 2346776666654
No 280
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=20.64 E-value=1.3e+02 Score=26.13 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=18.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHH----HCCCcEEEEE
Q 038258 270 VVIYTTTLRGIRKTFEDCNKVRSIIE----SHQVQTLERD 305 (366)
Q Consensus 270 VVIYTkSl~GiRktCp~C~kaK~lLe----s~gV~y~ErD 305 (366)
|.+|+-. .||||--....|+ .+++.++.+=
T Consensus 1 i~~~~D~------~cP~cy~~~~~l~~~~~~~~~~i~~~p 34 (192)
T cd03022 1 IDFYFDF------SSPYSYLAHERLPALAARHGATVRYRP 34 (192)
T ss_pred CeEEEeC------CChHHHHHHHHHHHHHHHhCCeeEEee
Confidence 3466666 5999966554444 5666655443
No 281
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=20.35 E-value=1.6e+02 Score=26.89 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=18.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHH----HHCCCcEE
Q 038258 269 AVVIYTTTLRGIRKTFEDCNKVRSII----ESHQVQTL 302 (366)
Q Consensus 269 kVVIYTkSl~GiRktCp~C~kaK~lL----es~gV~y~ 302 (366)
+|.+|+-. .||||--+..-| ...+|.+.
T Consensus 2 ~Id~~~D~------vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDV------VSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeC------CChHHHHHHHHHHHHHHHhCCeEE
Confidence 46778877 599996554444 45666644
No 282
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.13 E-value=2.6e+02 Score=31.05 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=50.9
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHHCCCcEEEEEcC----CCHHHHHHHHHHhCCCCccccEEEECCEEEeccH-H
Q 038258 268 NAVVIYTTTLRGIRKTFEDCNKVRSIIESHQVQTLERDIS----MDSGFKEELRALMESKQVKVPLVFVKGRLIGGVD-E 342 (366)
Q Consensus 268 ~kVVIYTkSl~GiRktCp~C~kaK~lLes~gV~y~ErDVs----~D~e~reELkeltG~~~~tVPqVFI~Gk~IGG~d-E 342 (366)
..|+|.+.+. ....|.+|...|+..||..+.+|+. .|.+. +.++.... --.|.+.+..+||+- +
T Consensus 545 ~dvtIva~G~-----~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~---i~sl~k~~---~~vVt~Ee~~~GG~Gs~ 613 (641)
T PLN02234 545 ERVALLGYGS-----AVQRCLEAASMLSERGLKITVADARFCKPLDVAL---IRSLAKSH---EVLITVEEGSIGGFGSH 613 (641)
T ss_pred CCEEEEEecH-----HHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHH---HHHHHHhC---CEEEEECCCCCCcHHHH
Confidence 3577777764 4778999999999999999999997 23333 33332211 123445554569884 4
Q ss_pred HHh-HHHhCcHHHHhcc
Q 038258 343 VMK-LEEEGKLEILFDR 358 (366)
Q Consensus 343 l~e-L~EsGeL~~LLk~ 358 (366)
+.+ +.++|-+++.++-
T Consensus 614 Va~~l~e~~~~~~~~~~ 630 (641)
T PLN02234 614 VVQFLALDGLLDGKLKV 630 (641)
T ss_pred HHHHHHHcCCCCCCceE
Confidence 444 5666766666543
Done!