BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038259
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/505 (51%), Positives = 339/505 (67%), Gaps = 33/505 (6%)
Query: 6 KVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRL 65
K+ YT+ + Y S+LN TIQN RF + TPKPLVI+TP + S +QA I CSKK GLQIR
Sbjct: 23 KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT 82
Query: 66 RSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNL 125
RSGGHD EG+SY+SQVPFVV+DL N+ I +D ++TAWV+AGATLG++YY I EK++NL
Sbjct: 83 RSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENL 142
Query: 126 GFPAGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWA 185
FP G CPTV ++R +GLAADNI+DAHL++ +G+ LDR+SMGEDLFWA
Sbjct: 143 SFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWA 202
Query: 186 IRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDL- 243
IRGGG G +FG+I AWK++LV VPS T V +N+E K+ +KWQ +A K +DL
Sbjct: 203 IRGGG-GENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLV 261
Query: 244 ----FIEVTLT----RMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWI 295
FI +T + +T+ FS +F GGVD L+ LM +SFPELG+ K DC E SWI
Sbjct: 262 LMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWI 321
Query: 296 ESV--------HNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQN 347
++ N A F K ++LLDR+A K F K DYVK+PIP+
Sbjct: 322 DTTIFYSGVVNFNTANFKK----EILLDRSAGK---------KTAFSIKLDYVKKPIPET 368
Query: 348 AFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTS 407
A I +K YEE+ VL PYGG M EISES PFPHRAG +Y+++Y +W + +
Sbjct: 369 AMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDN 428
Query: 408 RRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIG-TNNQGYTSIKQASVWGSKYFKNNF 466
+HI+W+R +Y + TPYVS+NPR AY+NYRDLD+G TN+ + QA +WG KYF NF
Sbjct: 429 EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNF 488
Query: 467 KRLVRVKSMVDPHNFFRNEQSIPPL 491
RLV+VK+ VDP+NFFRNEQSIPPL
Sbjct: 489 NRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/487 (46%), Positives = 307/487 (63%), Gaps = 21/487 (4%)
Query: 9 YTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSG 68
Y K + +Y+SV + T++N +F + T KPL IITP + S +QAA+ C ++HG++IR+RSG
Sbjct: 27 YAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASHIQAAVVCGRRHGMRIRVRSG 86
Query: 69 GHDFEGLSYVSQVP--FVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLG 126
GHD+EGLSY S+ P F V+D+ + +++D A TAWV +GA LG LYY IA+ S LG
Sbjct: 87 GHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDSGAQLGDLYYGIAKASPKLG 146
Query: 127 FPAGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAI 186
FPAG+C T+ ++LRK+G AADN++DA ++DA GR LDR++MGED FWAI
Sbjct: 147 FPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVVDAQGRLLDRKAMGEDHFWAI 206
Query: 187 RGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIE 246
RGGG G SFG++ +W+V+L+PVP VT V + +++ A +V KWQ VA L +DL I
Sbjct: 207 RGGG-GESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDLVTKWQTVAPALPDDLMIR 265
Query: 247 VTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDK 306
+ M A F ++ G L+ LM FPELG+ C EM+WIESV + K
Sbjct: 266 I----MAMGQGAMFEALYLGTCKDLVLLMTARFPELGMNATHCKEMTWIESVPYIPMGPK 321
Query: 307 GQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFM 366
G DLL N SN K F K KSDYV +PIP++ +E I+ + M
Sbjct: 322 GTVRDLL---NRTSN-------IKAFGKYKSDYVLEPIPKSDWEKIFTWLVKPGA--GVM 369
Query: 367 VLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVS 426
++ PYGG ++ + ES TPFP R+G L+ I Y V W + + W R +Y +MTPYVS
Sbjct: 370 IMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAALPTQWTRDIYDFMTPYVS 429
Query: 427 KNPREAYINYRDLDIGTNN--QGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRN 484
KNPR+AY+NYRDLD+G N ++ VWG KYFK NF+RL R K +DP ++FRN
Sbjct: 430 KNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLARTKGKIDPEDYFRN 489
Query: 485 EQSIPPL 491
EQSIPPL
Sbjct: 490 EQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/490 (44%), Positives = 304/490 (62%), Gaps = 19/490 (3%)
Query: 6 KVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRL 65
++ Y K + +Y SVL TI+N R+S+P+ KPL IITP VS +Q+A+ C ++H ++IR+
Sbjct: 22 RLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRV 81
Query: 66 RSGGHDFEGLSYVSQVP--FVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSK 123
RSGGHD+EGLSY S P F V+DL + + VD A+TAWV +GA LG+LYY I + S
Sbjct: 82 RSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASP 141
Query: 124 NLGFPAGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLF 183
L FPAG+CPT+ ++LRK+G+AA+N++D L+DANG+ D++SMG+D F
Sbjct: 142 TLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHF 201
Query: 184 WAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDL 243
WA+RGGG G SFG++VAW+V+L+PVP TVT +++ + + A I++KWQ VA +L DL
Sbjct: 202 WAVRGGG-GESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADL 260
Query: 244 FIEVTLTRMNSTMVATFSLVFQGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAG 303
I + + ATF ++ G L PLM FPELG+ C EMSWI+S+ +
Sbjct: 261 MIRI----IAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHL 316
Query: 304 FDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQR 363
+ D LL+R + K F + KSDYV QP P+ +E I + + + G
Sbjct: 317 GHRDALEDDLLNR---------QNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGA- 366
Query: 364 AFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTP 423
M+ PYG +S ES TPFPHR G L+ I Y W + + W + +Y YM P
Sbjct: 367 GIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEP 426
Query: 424 YVSKNPREAYINYRDLDIGTNN--QGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNF 481
YVSKNPR+AY NYRD+D+G N ++ VWG KYFK NF+RL K VDP ++
Sbjct: 427 YVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDY 486
Query: 482 FRNEQSIPPL 491
FRNEQSIPPL
Sbjct: 487 FRNEQSIPPL 496
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/493 (43%), Positives = 296/493 (60%), Gaps = 30/493 (6%)
Query: 13 NSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDF 72
+S ++ L+ +IQN F KP II P ++ I+C +K IRLRSGGH +
Sbjct: 28 DSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSY 87
Query: 73 EGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLC 132
EGLSY S PF++IDL+NL+ +++D ++TAWV++G+TLG+LYY I E S LGF AG C
Sbjct: 88 EGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWC 147
Query: 133 PTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIG 192
PTV +M RK+GLAADN+VDA LIDANG LDR++MGED+FWAIRGGG G
Sbjct: 148 PTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGG 207
Query: 193 ASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDLFIEVTLTR 251
+G I AWK++L+PVP VT VT+N+ AT ++HKWQ+VA +L ED + V L
Sbjct: 208 V-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGG 265
Query: 252 MNSTMVATFSLVFQGGVDRLL-PLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSL 310
+ V L F G+ + FPELGL +ED EMSW ES LAG + L
Sbjct: 266 ADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQL 325
Query: 311 D---LLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMV 367
+ L D A FK K D K+P+P AF G+ ++ +E F+
Sbjct: 326 NNRFLKFDERA--------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIA 369
Query: 368 LVPYGGKMSEISESETPFPHRAGNLYKIFYGVAW--GEDRTSRRHIDWIRRLYGYMTPYV 425
L +GG+MS+IS TPFPHR+G + Y VAW E + +DW+ ++Y +M P+V
Sbjct: 370 LNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFV 429
Query: 426 SKNPREAYINYRDLDIGTNNQGYTSIKQASV-----WGSKYFKNNFKRLVRVKSMVDPHN 480
SKNPR Y+N+ DLD+G + G ++ ++ WG YF +N++RL+R K+++DP+N
Sbjct: 430 SKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNN 489
Query: 481 FFRNEQSIPPLTS 493
F + QSIPP+ +
Sbjct: 490 VFNHPQSIPPMAN 502
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/493 (43%), Positives = 296/493 (60%), Gaps = 30/493 (6%)
Query: 13 NSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDF 72
+S ++ L+ +IQN F KP II P ++ I+C +K IRLRSGGH +
Sbjct: 28 DSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSY 87
Query: 73 EGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLC 132
EGLSY S PF++IDL+NL+ +++D ++TAWV++G+TLG+LYY I E S LGF AG C
Sbjct: 88 EGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWC 147
Query: 133 PTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIG 192
PTV +M RK+GLAADN+VDA LIDANG LDR++MGED+FWAIRGGG G
Sbjct: 148 PTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGG 207
Query: 193 ASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDLFIEVTLTR 251
+G I AWK++L+PVP VT VT+N+ AT ++HKWQ+VA +L ED + V L
Sbjct: 208 V-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGG 265
Query: 252 MNSTMVATFSLVFQGGVDRLL-PLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSL 310
+ V L F G+ + FPELGL +ED EMSW ES LAG + L
Sbjct: 266 ADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQL 325
Query: 311 D---LLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMV 367
+ L D A FK K D K+P+P AF G+ ++ +E F+
Sbjct: 326 NNRFLKFDERA--------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIA 369
Query: 368 LVPYGGKMSEISESETPFPHRAGNLYKIFYGVAW--GEDRTSRRHIDWIRRLYGYMTPYV 425
L +GG+MS+IS TPFPHR+G + Y VAW E + +DW+ ++Y +M P+V
Sbjct: 370 LNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFV 429
Query: 426 SKNPREAYINYRDLDIGTNNQGYTSIKQASV-----WGSKYFKNNFKRLVRVKSMVDPHN 480
SKNPR Y+N+ DLD+G + G ++ ++ WG YF +N++RL+R K+++DP+N
Sbjct: 430 SKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNN 489
Query: 481 FFRNEQSIPPLTS 493
F + QSIPP+ +
Sbjct: 490 VFNHPQSIPPMAN 502
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/492 (43%), Positives = 295/492 (59%), Gaps = 30/492 (6%)
Query: 13 NSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDF 72
+S ++ L+ +IQN F KP II P ++ I+C +K IRLRSGGH +
Sbjct: 22 DSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSY 81
Query: 73 EGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLC 132
EGLSY S PF++IDL+NL+ +++D ++TAWV++G+TLG+LYY I E S LGF AG C
Sbjct: 82 EGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWC 141
Query: 133 PTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIG 192
PTV +M RK+GLAADN+VDA LIDANG LDR++MGED+FWAIRGGG G
Sbjct: 142 PTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGG 201
Query: 193 ASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDLFIEVTLTR 251
+G I AWK++L+PVP VT VT+N+ AT ++HKWQ+VA +L ED + V L
Sbjct: 202 V-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGG 259
Query: 252 MNSTMVATFSLVFQGGVDRLL-PLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSL 310
+ V L F G+ + FPELGL +ED EMSW ES LAG + L
Sbjct: 260 ADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQL 319
Query: 311 D---LLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMV 367
+ L D A FK K D K+P+P AF G+ ++ +E F+
Sbjct: 320 NNRFLKFDERA--------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIA 363
Query: 368 LVPYGGKMSEISESETPFPHRAGNLYKIFYGVAW--GEDRTSRRHIDWIRRLYGYMTPYV 425
L +GG+MS+IS TPFPHR+G + Y VAW E + +DW+ ++Y +M P+V
Sbjct: 364 LNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFV 423
Query: 426 SKNPREAYINYRDLDIGTNNQGYTSIKQASV-----WGSKYFKNNFKRLVRVKSMVDPHN 480
SKNPR Y+N+ DLD+G + G ++ ++ WG YF +N++RL+R K+++DP+N
Sbjct: 424 SKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNN 483
Query: 481 FFRNEQSIPPLT 492
F + QSIPP+
Sbjct: 484 VFNHPQSIPPMA 495
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/494 (42%), Positives = 297/494 (60%), Gaps = 30/494 (6%)
Query: 13 NSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDF 72
+S ++ L+ +IQN F KP II P ++ I+C +K IRLRSGGH +
Sbjct: 47 DSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSY 106
Query: 73 EGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLC 132
EGLSY S PF++IDL+NL+ +++D ++TAWV++G+TLG+LYY I E S LGF AG C
Sbjct: 107 EGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWC 166
Query: 133 PTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIG 192
PTV +M RK+GLAADN+VDA LIDANG LDR++MGED+FWAIRGGG G
Sbjct: 167 PTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGG 226
Query: 193 ASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDLFIEVTLTR 251
+G I AWK++L+PVP VT VT+N+ AT ++HKWQ+VA +L ED + V L
Sbjct: 227 V-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGG 284
Query: 252 MNSTMVATFSLVFQGGVDRLL-PLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSL 310
+ V L F G+ + FPELGL +ED EMSW ES LAG + L
Sbjct: 285 ADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQL 344
Query: 311 D---LLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMV 367
+ L D A FK K D K+P+P AF G+ ++ +E F+
Sbjct: 345 NNRFLKFDERA--------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIA 388
Query: 368 LVPYGGKMSEISESETPFPHRAGNLYKIFYGVAW--GEDRTSRRHIDWIRRLYGYMTPYV 425
L +GG+MS+IS TPFPHR+G + Y VAW E + +DW+ ++Y +M P+V
Sbjct: 389 LNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFV 448
Query: 426 SKNPREAYINYRDLDIGTNNQGYTSIKQASV-----WGSKYFKNNFKRLVRVKSMVDPHN 480
SKNPR Y+N+ DLD+G + G ++ ++ WG YF +N++RL+R K+++DP+N
Sbjct: 449 SKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNN 508
Query: 481 FFRNEQSIPPLTSW 494
F + QSIPP+ ++
Sbjct: 509 VFNHPQSIPPMANF 522
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/492 (42%), Positives = 294/492 (59%), Gaps = 30/492 (6%)
Query: 13 NSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDF 72
+S ++ L+ +IQN F KP II P ++ I+C +K IRLRSGGH +
Sbjct: 22 DSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSY 81
Query: 73 EGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLC 132
EGLSY S PF++IDL+NL+ +++D ++TAWV++G+TLG+LYY I E S LGF AG
Sbjct: 82 EGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWA 141
Query: 133 PTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIG 192
PTV +M RK+GLAADN+VDA LIDANG LDR++MGED+FWAIRGGG G
Sbjct: 142 PTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGG 201
Query: 193 ASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDLFIEVTLTR 251
+G I AWK++L+PVP VT VT+N+ AT ++HKWQ+VA +L ED + V L
Sbjct: 202 V-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGG 259
Query: 252 MNSTMVATFSLVFQGGVDRLL-PLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSL 310
+ V L F G+ + FPELGL +ED EMSW ES LAG + L
Sbjct: 260 ADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQL 319
Query: 311 D---LLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMV 367
+ L D A FK K D K+P+P AF G+ ++ +E F+
Sbjct: 320 NNRFLKFDERA--------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIA 363
Query: 368 LVPYGGKMSEISESETPFPHRAGNLYKIFYGVAW--GEDRTSRRHIDWIRRLYGYMTPYV 425
L +GG+MS+IS TPFPHR+G + Y VAW E + +DW+ ++Y +M P+V
Sbjct: 364 LNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFV 423
Query: 426 SKNPREAYINYRDLDIGTNNQGYTSIKQASV-----WGSKYFKNNFKRLVRVKSMVDPHN 480
SKNPR Y+N+ DLD+G + G ++ ++ WG YF +N++RL+R K+++DP+N
Sbjct: 424 SKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNN 483
Query: 481 FFRNEQSIPPLT 492
F + QSIPP+
Sbjct: 484 VFNHPQSIPPMA 495
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/492 (42%), Positives = 294/492 (59%), Gaps = 30/492 (6%)
Query: 13 NSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDF 72
+S ++ L+ +IQN F KP II P ++ I+C +K IRLRSGG +
Sbjct: 25 DSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASY 84
Query: 73 EGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLC 132
EGLSY S PF++IDL+NL+ +++D ++TAWV++G+TLG+LYY I E S LGF AG C
Sbjct: 85 EGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWC 144
Query: 133 PTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIG 192
PTV +M RK+GLAADN+VDA LIDANG LDR++MGED+FWAIRGGG G
Sbjct: 145 PTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGG 204
Query: 193 ASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDLFIEVTLTR 251
+G I AWK++L+PVP VT VT+N+ AT ++HKWQ+VA +L ED + V L
Sbjct: 205 V-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGG 262
Query: 252 MNSTMVATFSLVFQGGVDRLL-PLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSL 310
+ V L F G+ + FPELGL +ED EMSW ES LAG + L
Sbjct: 263 ADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQL 322
Query: 311 D---LLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMV 367
+ L D A FK K D K+P+P AF G+ ++ +E F+
Sbjct: 323 NNRFLKFDERA--------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIA 366
Query: 368 LVPYGGKMSEISESETPFPHRAGNLYKIFYGVAW--GEDRTSRRHIDWIRRLYGYMTPYV 425
L +GG+MS+IS TPFPHR+G + Y VAW E + +DW+ ++Y +M P+V
Sbjct: 367 LNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFV 426
Query: 426 SKNPREAYINYRDLDIGTNNQGYTSIKQASV-----WGSKYFKNNFKRLVRVKSMVDPHN 480
SKNPR Y+N+ DLD+G + G ++ ++ WG YF +N++RL+R K+++DP+N
Sbjct: 427 SKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNN 486
Query: 481 FFRNEQSIPPLT 492
F + QSIPP+
Sbjct: 487 VFNHPQSIPPMA 498
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/493 (42%), Positives = 295/493 (59%), Gaps = 30/493 (6%)
Query: 13 NSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDF 72
+S ++ L+ +IQN F KP II P ++ I+C +K IRLRSGGH +
Sbjct: 22 DSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSY 81
Query: 73 EGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLC 132
EGLSY S PF++IDL+NL+ +++D ++TAWV++G+TLG+LYY I E S LGF AG
Sbjct: 82 EGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWA 141
Query: 133 PTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIG 192
PTV +M RK+GLAADN+VDA LIDANG LDR++MGED+FWAIRGGG G
Sbjct: 142 PTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGG 201
Query: 193 ASFGVIVAWKVRLVPVPSTVTRCLVTRNLE-QNATKIVHKWQYVANKLHEDLFIEVTLTR 251
+G I AWK++L+PVP VT VT+N+ AT ++HKWQ+VA +L ED + V L
Sbjct: 202 V-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGG 259
Query: 252 MNSTMVATFSLVFQGGVDRLL-PLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSL 310
+ V L F G+ + FPELGL +ED EMSW ES LAG + L
Sbjct: 260 ADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQL 319
Query: 311 D---LLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMV 367
+ L D A FK K D K+P+P AF G+ ++ +E F+
Sbjct: 320 NNRFLKFDERA--------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIA 363
Query: 368 LVPYGGKMSEISESETPFPHRAGNLYKIFYGVAW--GEDRTSRRHIDWIRRLYGYMTPYV 425
L +GG+MS+IS TPFPHR+G + Y VAW E + +DW+ ++Y +M P+V
Sbjct: 364 LNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFV 423
Query: 426 SKNPREAYINYRDLDIGTNNQGYTSIKQASV-----WGSKYFKNNFKRLVRVKSMVDPHN 480
SKNPR Y+N+ DLD+G + G ++ ++ WG YF +N++RL+R K+++DP+N
Sbjct: 424 SKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNN 483
Query: 481 FFRNEQSIPPLTS 493
F + QSIPP+ +
Sbjct: 484 VFNHPQSIPPMAN 496
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 123/496 (24%), Positives = 209/496 (42%), Gaps = 72/496 (14%)
Query: 36 KPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEIN 95
+P V+ QV A+ + G +I +RSGGH FEG V VID+ + ++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAV-RAVIDMSQMRQVF 113
Query: 96 VDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVXXXXXXXXXXXXVMLRKFGL 155
D+ + V+ GATLG+ YR + PAG+CP V + R+ G+
Sbjct: 114 YDSGKRAFAVEPGATLGET-YRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGV 172
Query: 156 AADNI--VDAHLIDANGRF--LDRESMGED----LFWAIRGGGIGASFGVIVAWKVR--- 204
AD++ V+ ++DA+GR + S +D L+WA GG G +FG++ + R
Sbjct: 173 VADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWA-HTGGGGGNFGIVTRYWFRTPG 231
Query: 205 --------LVP-VPSTVTRCLVTRN----LEQNATKIV--HKWQYVANKLHEDLFIEV-T 248
L+P P++ R +VT + E+ T+I+ H + +N + + +
Sbjct: 232 ATGTDPSQLLPKAPTSTLRHIVTWDWSALTEEAFTRIIDNHGAWHQSNSAAGTPYASMHS 291
Query: 249 LTRMNSTMVATFSLVFQ--GGVDRLLPLMQESFPEL--GLTKEDCTEMS---WIESVHNL 301
+ +NS L Q GG+D L+ + + G E + S W+ + L
Sbjct: 292 VFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPWLRA--TL 349
Query: 302 AG-FDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEE 360
A FD G DR K K Y+++P +Y +
Sbjct: 350 ANKFDTGG-----FDRT----------------KSKGAYLRKPWTAAQAATLYRHLSADS 388
Query: 361 GQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGY 420
+ L YGGK++ + E+ T R ++ K++ W + ++ WIR +Y
Sbjct: 389 QVWGEVSLYSYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDANLAWIREIYRE 447
Query: 421 M------TPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKS 474
+ P +INY D+D+ + + W + Y+K N+ RL +VK+
Sbjct: 448 IFATTGGVPVPDDRTEGTFINYPDVDLVDERWNTSGVP----WYTLYYKGNYPRLQKVKA 503
Query: 475 MVDPHNFFRNEQSIPP 490
DP + FR+ S+ P
Sbjct: 504 RWDPRDVFRHALSVRP 519
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 112/469 (23%), Positives = 201/469 (42%), Gaps = 47/469 (10%)
Query: 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSE-IN 95
P I + +Q+A++C+KK L++ +SGGH + + + +++ L + + I+
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVIS 96
Query: 96 VDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVXXXXXXXXXXXXVMLRKFGL 155
+ A V+ GA LG L + +K G CP V GL
Sbjct: 97 YNDKTGIAHVEPGARLGHLATVLNDKYGR-AISHGTCPGVGISGHFAHGGFGFSSHMHGL 155
Query: 156 AADNIVDAHLIDANGRFLDRESM-GEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTR 214
A D++V ++ A+GR ++ + DLFW I+G G++FG++ WK+ P P +TR
Sbjct: 156 AVDSVVGVTVVLADGRIVEASATENADLFWGIKGA--GSNFGIVAVWKLATFPAPKVLTR 213
Query: 215 CLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSL--VFQGGVDRLL 272
VT N +N T + + V + EV R+ + ++ G ++
Sbjct: 214 FGVTLNW-KNKTSALKGIEAVEDYARWVAPREVNF-RIGDYGAGNPGIEGLYYGTPEQWR 271
Query: 273 PLMQESFPEL--GLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTK 330
Q L G T ++WIESV + + FD + N + + +
Sbjct: 272 AAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKG 331
Query: 331 DFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISE---SETPFPH 387
D K DY + + D+F+ F L +GGK S++++ +ET +PH
Sbjct: 332 DAVKNFVDYY-----FDVSNKVKDRFW-------FYQLDVHGGKNSQVTKVTNAETAYPH 379
Query: 388 RAGNLYKIFYGVAWGEDR----TSRRHID-WIRRLYGYMTPYVSKNPREAYINYRDLDIG 442
R L+ I + + ++ TS + +D W+ + T + K+ YINY D +
Sbjct: 380 R-DKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSV----TKALPKSDWGMYINYADPRM- 433
Query: 443 TNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPPL 491
++ Y + Y+ N RL ++K+ DP + F Q++ P+
Sbjct: 434 --DRDYAT--------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 119/510 (23%), Positives = 194/510 (38%), Gaps = 75/510 (14%)
Query: 25 QNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFV 84
+N RF P+ + ++ ++++ + + + G ++ +RSGGH +E S V V
Sbjct: 51 ENLRFV--GDPEEIHLVG--SAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RV 105
Query: 85 VIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVXXXXXXXXX 144
V+D+ LS + D V+AGATLG +Y + + + P G CP V
Sbjct: 106 VMDMSRLSAVGFDEERGAFAVEAGATLGAVY-KTLFRVWGVTLPGGACPDVGAGGHILGG 164
Query: 145 XXXVMLRKFGLAAD--NIVDAHLIDANGR----FLDRESM--GEDLFWAIRGGGIGASFG 196
+ R G D + V+ ++DA+G RE DL+WA GGG G
Sbjct: 165 GYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGV 224
Query: 197 VIVAW-KVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHE-------------- 241
V+ W + VP R L E V W+ +
Sbjct: 225 VVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNHGRWFEQNS 284
Query: 242 -------DLFIEVTLTRMNSTMVATFSLVFQGGVD---RLLPLMQESFPELGLTKE-DCT 290
DL+ + LTR S +A + + G D RL + +G+ D
Sbjct: 285 GPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHSDTR 344
Query: 291 EMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFE 350
+ W+ S R G+ +G K K+ Y ++
Sbjct: 345 RLPWLHST--------------------RWPGIAGDGDMTGRAKIKAAYARRSFDDRQIG 384
Query: 351 GIYDKFY--EEEGQRAFMVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVAWGEDRTSR 408
+Y + + + + L+ YGGK++ + T R ++ KI Y W +
Sbjct: 385 TLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDP 443
Query: 409 RHIDWIRRLYGYM------TPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYF 462
H+ WIR LY + P AY+NY D+D+ + + W Y+
Sbjct: 444 VHVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLADEEWNTSGVP----WSELYY 499
Query: 463 KNNFKRLVRVKSMVDPHNFFRNEQS--IPP 490
K+ + RL VK+ DP N FR+ S +PP
Sbjct: 500 KDAYPRLQAVKARWDPRNVFRHALSVRVPP 529
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 120/473 (25%), Positives = 200/473 (42%), Gaps = 48/473 (10%)
Query: 48 QVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQA 107
QV A++ + + G ++ +RSGGH FE V V+ID+ L+EI D ++
Sbjct: 69 QVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTEIAYDPSMNAFLIEP 127
Query: 108 GATLGQLYYRIAEKSKNLGFPAGLCPTVXXXXXXXXXXXXVMLRKFGLAADNI--VDAHL 165
G TL ++Y ++ N+ P G+C V + R+FG D + V+ +
Sbjct: 128 GNTLSEVYEKLY-LGWNVTIPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVV 186
Query: 166 IDANGRFL------DRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTR 219
++ G+ +R+ DL+WA GG G +FGV+ + +R VP V R
Sbjct: 187 VNKQGKARVIVATRERDDPHHDLWWA-HTGGGGGNFGVVTKYWMR---VPEDVGRNPERL 242
Query: 220 NLEQNATKIVHKWQYVANKLHEDLFIEVTLTR-----MNSTMVATFS-LVFQGGVDRLLP 273
+ AT + + + E F + NS + ++ L Q + +P
Sbjct: 243 LPKPPATLLTSTVTFDWAGMTEAAFSRLLRNHGEWYERNSGPDSPYTGLWSQLMIGNEVP 302
Query: 274 LMQES---FP-ELGLTKEDCTEM--SWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNG 327
M ES P ++ T+ D + + IE+V + G + + + R S G
Sbjct: 303 GMGESGFMMPIQVDATRPDARRLLDAHIEAV--IDGVPPAEVPEPIEQRWLAS--TPGRG 358
Query: 328 TTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEG-QRAFMVLVPYGGKMSEISESETPFP 386
K K+ Y+++ + + +Y+ +G + L+ YGGK++ + + T P
Sbjct: 359 GRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALP 418
Query: 387 HRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLYGYM------TPYVSKNPREAYINYRDLD 440
R L K+ Y W +H+ W+R+LY + P + AYINY D D
Sbjct: 419 QRDAIL-KVNYITGWANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSD 477
Query: 441 I---GTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPP 490
+ G N G W Y+K N RL +VK+ DP N F + SI P
Sbjct: 478 LADPGLNTSGVP-------WHDLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/470 (24%), Positives = 189/470 (40%), Gaps = 66/470 (14%)
Query: 36 KPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEIN 95
+P +I L V +++ + +GL+I +RSGGH+ G Y + +V+DL ++ I+
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 96 VDAVAKTAWVQAGATLGQLYYRIAEKSK-NLGFPAGLCPTVXXXXXXXXXXXXVMLRKFG 154
+D A + G G L + E +K L G+ P V + K+G
Sbjct: 96 IDTAGSRARIGGGVISGDL---VKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYG 152
Query: 155 LAADNIVDAHLIDANGRFL---DRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPST 211
LA+DNI+ A L+ A G + D E +LFWA+RG G +FGV+ +V+L +P
Sbjct: 153 LASDNILGATLVTATGDVIYCSDDER--PELFWAVRGA--GPNFGVVTEVEVQLYELPRK 208
Query: 212 VTRCLVT-----RNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQG 266
+ +T L T ++ +A+ ++ +F+ V R S V L G
Sbjct: 209 MLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVGHL---G 265
Query: 267 GVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNL----AGFDKGQSLDLLLDRNARSNG 322
G+D + LG T D + + V L F+ G S +L +DR
Sbjct: 266 GLD-IAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMS-NLWIDREI---- 319
Query: 323 VVVNGTTKDFFKGKSD-YVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGKMSEISES 381
+ N + G D +V +P + + E EG +P+G +
Sbjct: 320 AMPNARFAEAIAGNLDKFVSEPASGGSVK------LEIEG-------MPFG------NPK 360
Query: 382 ETPFPHRAGNLYKIFYGVAW-GEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLD 440
TP HR + + W G S ++ + R L + A +
Sbjct: 361 RTPARHR--DAMGVLALAEWSGAAPGSEKYPELARELDAALL--------RAGVTTSGFG 410
Query: 441 IGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPP 490
+ NN T+ A V Y + RL VK DP N FR+ +I P
Sbjct: 411 LLNNNSEVTAEMVAEV----YKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 124/528 (23%), Positives = 199/528 (37%), Gaps = 100/528 (18%)
Query: 12 INSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGH- 70
I S+S F ++ F P TP +V A+++ + G + RSGGH
Sbjct: 21 IELSHSDNHRFVVEPEEFFLPATPDDVV-----------ASLQKAVTEGRGVACRSGGHC 69
Query: 71 --DFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFP 128
DF G +V+DL NL I A V +GAT+ Q+ + + N P
Sbjct: 70 GQDFVGTPRRD----LVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRR-WNAALP 124
Query: 129 AGLCPTVXXXXXXXXXXXXVMLRKFGLAADNI--VDAHLIDAN-------GRFLDRESMG 179
G C V + R+ GL D++ V+ ++D + R D +G
Sbjct: 125 LGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLG 184
Query: 180 EDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKL 239
E LFWA GG G +FGV+ A++ R +T L + K+V W +
Sbjct: 185 E-LFWAHT-GGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMI---- 238
Query: 240 HEDLFIEVTLTRM-------------NSTMVATF----------SLVFQGGVD------- 269
E F+ V + R S++ ATF L+ Q D
Sbjct: 239 DETSFVTV-MRRFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEI 297
Query: 270 --RLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVVVNG 327
R + + E +G+ + MSW+ ++ D G D++ R+A
Sbjct: 298 LARFVASLTEGTGVVGIPRGGV--MSWLTGTRYMSQADCG---DVMGARSA--------- 343
Query: 328 TTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEE-GQRAFMVLVPYGGKMSEISESETPFP 386
KS Y + ++ + + GQ ++++ YGG+++ S+ P
Sbjct: 344 -------SKSAYHRAAPTDEQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVP 396
Query: 387 HRAGNLYKIFYGVAWGEDRTSRRHIDWIRRLY------GYMTPYVSKNPREAYINYRDLD 440
R ++ K + AW + H+ W+R LY P YINY D D
Sbjct: 397 QR-DSVVKSSWFSAWQDAELDELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDAD 455
Query: 441 IGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSI 488
+ + + W Y+K+N+ RL K DP N F + SI
Sbjct: 456 LLDPARN----RSGEPWHHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/475 (20%), Positives = 190/475 (40%), Gaps = 46/475 (9%)
Query: 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINV 96
P I P + AA++C G+QI + GGH + + + ++++L + ++V
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 97 DAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVXXXXXXXXXXXXVMLRKFGLA 156
D A +Q GA LG + ++ N G CP V GL
Sbjct: 103 DD-NNVATIQGGARLGYTALELLDQG-NRALSHGTCPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 157 ADNIVDAHLIDANGRFLD-RESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRC 215
D ++ A ++ A+ + E+ DLFWA+RGGG G F ++ ++ P +T
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG--FAIVSEFEFNTFEAPEIITTY 218
Query: 216 LVTR--NLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDR--- 270
VT N +Q+ + + N + +L + + +N+ + F D
Sbjct: 219 QVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRL---EINANALNWEGNFFGNAKDLKKI 275
Query: 271 LLPLMQESFPELGLTKEDCTEMSWIESVHN-LAGFDKGQSLDLLLDRNARSNGVVVNGTT 329
L P+M+++ + ++K E W ++ L G D + + + +N + +
Sbjct: 276 LQPIMKKAGGKSTISK--LVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLS 333
Query: 330 KDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGK---MSEISESETPFP 386
+ + DY +D G+ ++ +GGK ++ +S ET +
Sbjct: 334 DEAIQAFVDYK------------FDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYA 381
Query: 387 HRAGNLYKIFYGVAWG-EDRTS---RRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIG 442
HR FY + E+ TS ++++ + + ++ + Y NY D
Sbjct: 382 HRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYAD---- 437
Query: 443 TNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPPLTSWRKK 497
T++ + Y++ N ++L +K+ DP + F N S+ P+ +K
Sbjct: 438 ------TTLTKEEA-QKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQK 485
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/475 (20%), Positives = 189/475 (39%), Gaps = 46/475 (9%)
Query: 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINV 96
P I P + AA++C G+QI + GGH + + + ++++L + ++V
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 97 DAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVXXXXXXXXXXXXVMLRKFGLA 156
D A +Q GA LG + ++ N G P V GL
Sbjct: 103 DD-NNVATIQGGARLGYTALELLDQG-NRALSHGTAPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 157 ADNIVDAHLIDANGRFLD-RESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRC 215
D ++ A ++ A+ + E+ DLFWA+RGGG G F ++ ++ P +T
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG--FAIVSEFEFNTFEAPEIITTY 218
Query: 216 LVTR--NLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFSLVFQGGVDR--- 270
VT N +Q+ + + N + +L + + +N+ + F D
Sbjct: 219 QVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRL---EINANALNWEGNFFGNAKDLKKI 275
Query: 271 LLPLMQESFPELGLTKEDCTEMSWIESVHN-LAGFDKGQSLDLLLDRNARSNGVVVNGTT 329
L P+M+++ + ++K E W ++ L G D + + + +N + +
Sbjct: 276 LQPIMKKAGGKSTISK--LVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLS 333
Query: 330 KDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEGQRAFMVLVPYGGK---MSEISESETPFP 386
+ + DY +D G+ ++ +GGK ++ +S ET +
Sbjct: 334 DEAIQAFVDYK------------FDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYA 381
Query: 387 HRAGNLYKIFYGVAWG-EDRTS---RRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIG 442
HR FY + E+ TS ++++ + + ++ + Y NY D
Sbjct: 382 HRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYAD---- 437
Query: 443 TNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIPPLTSWRKK 497
T++ + Y++ N ++L +K+ DP + F N S+ P+ +K
Sbjct: 438 ------TTLTKEEA-QKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQK 485
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPF----VVIDLLNLS 92
P +T V QVQ +K +H + I S G +F Y S P V++DL ++
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDLKKMN 114
Query: 93 EI-NVDAVAKTAWVQAGATLGQLYYRIAEKS 122
+I +D A V+ G T GQ+Y I E +
Sbjct: 115 KIIKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPF----VVIDLLNLS 92
P +T V QVQ +K +H + I S G +F Y S P V++DL ++
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDLKKMN 113
Query: 93 EI-NVDAVAKTAWVQAGATLGQLYYRIAEKS 122
+I +D A V+ G T GQ+Y I E +
Sbjct: 114 KIIKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 23/210 (10%)
Query: 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPF---VVIDLLNLSE 93
PLV+ P +V A K + + + + + G G Q P VVI L +
Sbjct: 53 PLVL-RPGSTEEVVAICKLANEARVALVPQGGNTGLVG----GQTPHNGEVVISLKRXDK 107
Query: 94 I-NVDAVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVXXXXXXXXXXXXVMLRK 152
I +D + T V+AGA L ++ + AE + G +
Sbjct: 108 IREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALA 167
Query: 153 FGLAADNIVDAHLIDANGRF------LDRESMG---EDLFWAIRGGGIGASFGVIVAWKV 203
+GLA D + ++ A+GR L +++ G DLF G + G+I A +
Sbjct: 168 YGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG-----TLGIITAATL 222
Query: 204 RLVPVPSTVTRCLVTRNLEQNATKIVHKWQ 233
+L P P V V +A K++ Q
Sbjct: 223 KLFPKPRAVETAFVGLQSPDDALKLLGIAQ 252
>pdb|1SMN|A Chain A, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1SMN|B Chain B, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1QAE|A Chain A, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1QAE|B Chain B, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1G8T|A Chain A, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
pdb|1G8T|B Chain B, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
Length = 245
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 3 SISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPK-----------PLVIITPLDVSQVQA 51
SI + YT N+S + N+ + TP + K P + P D + A
Sbjct: 22 SIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANA 81
Query: 52 AIKCSKKHGLQIRLRSGGHDFEGLSYVSQV 81
A+K + H + +G D+E L+Y+S +
Sbjct: 82 ALKVDRGHQAPLASLAGVSDWESLNYLSNI 111
>pdb|1QL0|A Chain A, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
pdb|1QL0|B Chain B, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
Length = 241
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 3 SISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPK-----------PLVIITPLDVSQVQA 51
SI + YT N+S + N+ + TP + K P + P D + A
Sbjct: 18 SIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANA 77
Query: 52 AIKCSKKHGLQIRLRSGGHDFEGLSYVSQV 81
A+K + H + +G D+E L+Y+S +
Sbjct: 78 ALKVDRGHQAPLASLAGVSDWESLNYLSNI 107
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 27/200 (13%)
Query: 29 FSTPNTPKPLVIITPLDVSQVQAAIKCS-KKHGLQIRLRSGGHDFEGLSYVSQVPFVVID 87
F N KPL ++ P+ + A+K + + L + R GH G + +V+D
Sbjct: 54 FGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAXAEG--GLVVD 111
Query: 88 LLNLSEINVD-----AVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCP--------- 133
+E + + TA+V G L+ + ++ + GL P
Sbjct: 112 XSTTAENHFEVGYLSGGDATAFVDVSG--GALWEDVLKRCVS---EYGLAPRSWTDYLGL 166
Query: 134 TVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDANGRFLD-RESMGEDLFWAIRGGGIG 192
TV ++G N+ + ++ NG + E +LF+++ GG+G
Sbjct: 167 TVGGTLSNAGVSGQAF--RYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVL-GGLG 223
Query: 193 ASFGVIVAWKVRLVPVPSTV 212
FG+I +V L P P V
Sbjct: 224 -QFGIITRARVLLQPAPDXV 242
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 418 YGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVD 477
YGY ++N AY+ ++ + +GYT+ K G+ YF R+ + VD
Sbjct: 364 YGY-----AQNQMSAYVELQEREFAAEERGYTATKHQREVGAGYFD-------RIATTVD 411
Query: 478 PHN 480
P++
Sbjct: 412 PNS 414
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 418 YGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVD 477
YGY ++N AY+ ++ + +GYT+ K G+ YF R+ + VD
Sbjct: 364 YGY-----AQNQMSAYVELQEREFAAEERGYTATKHQREVGAGYFD-------RIATTVD 411
Query: 478 PHN 480
P++
Sbjct: 412 PNS 414
>pdb|1B73|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
Length = 254
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 202 KVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVANKLHEDLFIEVTLTRMNSTMVATFS 261
K+ ++ P+TV R LE+ + K + L E+ +E +TR +V +
Sbjct: 108 KIGVIGTPATVKSGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITR---KVVEHYL 164
Query: 262 LVFQGGVDRLL------PLMQESFPE-LGLTKEDCTEMSWIESVHNLAGFDKGQSLDL 312
F+G +D L+ PL+++ + LG + + + S+HN D SL+L
Sbjct: 165 KEFKGKIDTLILGCTHYPLLKKEIKKFLGDAEVVDSSEALSLSLHNFIKDDGSSSLEL 222
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 151 RKFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPS 210
RKF L +D D HL+ + FLDRE G+D A+ GI A+ V ++R + S
Sbjct: 301 RKFKLVSDG-TDNHLVLXS--FLDREFSGKDADLALGNAGITANKNT-VPGEIRSPFITS 356
Query: 211 TV---TRCLVTRNLEQNATKIVHKWQYVANKLHE 241
+ T L R ++ +IV Y+A+ L +
Sbjct: 357 GLRLGTPALTARGFKEKEXEIVS--NYIADILDD 388
>pdb|3DU5|A Chain A, Structure Of The Catalytic Subunit Of Telomerase, Tert
pdb|3DU5|B Chain B, Structure Of The Catalytic Subunit Of Telomerase, Tert
pdb|3DU6|A Chain A, Structure Of The Catalytic Subunit Of Telomerase, Tert
pdb|3DU6|B Chain B, Structure Of The Catalytic Subunit Of Telomerase, Tert
pdb|3KYL|A Chain A, Structure Of The Catalytic Subunit Of Telomerase Bound
To Its Rna Template And Telomeric Dna
Length = 596
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 12 INSSYSSVLNFTIQNFRFSTPN-TPKPLVIITPL 44
+NS Y+S+LN ++NFR + T KP+ I+ L
Sbjct: 19 VNSKYNSILNIALKNFRLCKKHKTKKPVQILALL 52
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 265 QGGVDRLLPLMQESFPELGLTKEDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGVV 324
+G V+ +L L+++ + +TK+ T + H A + K + +LLL+R+A N
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPL------HVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 325 VNGTT 329
NG T
Sbjct: 177 KNGLT 181
>pdb|2WP4|A Chain A, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
pdb|2WP4|B Chain B, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
Length = 147
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 43 PLDVSQVQAAIKCSKKHGL-----QIRLRSGGHDFEGLSYVSQVPFVVIDLLNL 91
PL V +V AA+ ++ G+ +R + GHD L Y + P V+ L+++
Sbjct: 19 PLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSI 72
>pdb|4A12|A Chain A, Structure Of The Global Transcription Regulator Fapr From
Staphylococcus Aureus In Complex With Dna Operator
pdb|4A12|B Chain B, Structure Of The Global Transcription Regulator Fapr From
Staphylococcus Aureus In Complex With Dna Operator
pdb|4A12|C Chain C, Structure Of The Global Transcription Regulator Fapr From
Staphylococcus Aureus In Complex With Dna Operator
pdb|4A12|D Chain D, Structure Of The Global Transcription Regulator Fapr From
Staphylococcus Aureus In Complex With Dna Operator
Length = 190
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 314 LDRNARSNGVVVNGTTKDFFKGKSDYVKQPIPQNAFEGIYDKFYEEEG 361
L+ R+ VVN T K ++ YVK + F+G + FY++ G
Sbjct: 146 LNDTVRAEARVVNQTAKHYYVEVKSYVKHTL---VFKGNFKXFYDKRG 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,196,884
Number of Sequences: 62578
Number of extensions: 648764
Number of successful extensions: 1395
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1285
Number of HSP's gapped (non-prelim): 41
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)