Query 038259
Match_columns 501
No_of_seqs 241 out of 2130
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.5E-39 5.4E-44 339.4 40.5 190 27-221 55-254 (525)
2 PLN02805 D-lactate dehydrogena 100.0 1.4E-34 3.1E-39 308.0 33.2 192 35-231 132-330 (555)
3 TIGR01678 FAD_lactone_ox sugar 100.0 3E-33 6.4E-38 291.6 35.2 196 29-236 7-204 (438)
4 PRK11230 glycolate oxidase sub 100.0 7.9E-34 1.7E-38 300.8 31.4 197 32-231 51-253 (499)
5 TIGR01679 bact_FAD_ox FAD-link 100.0 5.6E-32 1.2E-36 281.7 33.7 194 29-237 4-199 (419)
6 TIGR01677 pln_FAD_oxido plant- 100.0 7.9E-32 1.7E-36 286.4 33.3 180 28-211 23-214 (557)
7 COG0277 GlcD FAD/FMN-containin 100.0 2.2E-32 4.7E-37 290.1 28.3 186 33-222 28-220 (459)
8 TIGR00387 glcD glycolate oxida 100.0 3.3E-32 7.2E-37 283.7 26.8 190 40-232 1-197 (413)
9 TIGR01676 GLDHase galactonolac 100.0 3.9E-32 8.4E-37 284.9 23.2 197 28-236 53-251 (541)
10 KOG1231 Proteins containing th 100.0 2.3E-30 5E-35 256.3 19.3 178 29-210 56-240 (505)
11 PRK11282 glcE glycolate oxidas 100.0 1.2E-29 2.7E-34 255.7 19.8 169 45-219 3-180 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 1.4E-28 3.1E-33 260.0 23.5 178 28-212 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 3.3E-27 7.2E-32 209.5 13.5 136 37-174 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 3.9E-25 8.5E-30 220.3 13.0 164 33-209 27-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 2.6E-24 5.7E-29 222.5 18.8 196 33-233 35-290 (564)
16 KOG1232 Proteins containing th 99.9 4.9E-24 1.1E-28 206.5 19.3 188 24-214 77-271 (511)
17 KOG4730 D-arabinono-1, 4-lacto 99.9 1.2E-22 2.6E-27 201.7 17.9 184 29-218 42-227 (518)
18 PRK12436 UDP-N-acetylenolpyruv 99.9 4.3E-23 9.3E-28 205.4 13.5 163 33-208 33-197 (305)
19 TIGR00179 murB UDP-N-acetyleno 99.9 1.9E-22 4.1E-27 199.1 13.5 164 33-207 9-174 (284)
20 PRK13903 murB UDP-N-acetylenol 99.9 4.3E-22 9.2E-27 201.1 15.1 165 33-209 29-197 (363)
21 PRK14652 UDP-N-acetylenolpyruv 99.9 6.5E-22 1.4E-26 196.5 14.1 163 32-209 31-196 (302)
22 PRK13906 murB UDP-N-acetylenol 99.9 6.4E-22 1.4E-26 197.0 13.6 162 34-208 34-197 (307)
23 KOG1233 Alkyl-dihydroxyacetone 99.8 1.5E-19 3.2E-24 175.8 16.0 187 29-221 153-352 (613)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 1.4E-19 3.1E-24 179.3 16.2 166 33-209 17-193 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 6.8E-19 1.5E-23 173.8 12.9 162 33-209 30-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.8 4E-18 8.6E-23 165.1 14.0 166 32-208 16-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 1E-17 2.2E-22 164.9 12.6 164 33-209 29-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 2.2E-17 4.8E-22 165.0 12.1 163 33-208 17-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.7 1E-16 2.2E-21 159.9 13.0 166 33-209 26-237 (354)
30 PF08031 BBE: Berberine and be 99.6 9.5E-17 2E-21 113.7 3.1 47 432-489 1-47 (47)
31 KOG1262 FAD-binding protein DI 99.6 3.9E-16 8.5E-21 152.4 7.3 166 44-212 61-232 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.6 2E-14 4.4E-19 139.7 11.4 150 34-208 18-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.3 5.4E-12 1.2E-16 121.6 9.4 145 33-210 15-161 (257)
34 PF09265 Cytokin-bind: Cytokin 96.6 0.0026 5.6E-08 62.3 4.9 34 454-488 247-280 (281)
35 PF00941 FAD_binding_5: FAD bi 95.5 0.018 3.8E-07 52.8 4.4 77 37-117 2-80 (171)
36 PRK09799 putative oxidoreducta 95.0 0.08 1.7E-06 51.8 7.6 140 39-204 4-155 (258)
37 PRK09971 xanthine dehydrogenas 94.3 0.096 2.1E-06 52.3 6.3 151 39-207 6-175 (291)
38 TIGR03312 Se_sel_red_FAD proba 93.7 0.22 4.9E-06 48.7 7.5 100 40-145 4-110 (257)
39 TIGR02963 xanthine_xdhA xanthi 92.9 0.25 5.4E-06 52.6 7.0 151 37-204 192-357 (467)
40 TIGR03195 4hydrxCoA_B 4-hydrox 91.5 0.36 7.9E-06 48.7 5.9 75 38-116 5-81 (321)
41 PLN00107 FAD-dependent oxidore 90.7 0.41 8.9E-06 46.2 5.1 22 464-485 176-197 (257)
42 TIGR03199 pucC xanthine dehydr 89.8 0.44 9.6E-06 46.8 4.7 70 43-116 1-73 (264)
43 PF02913 FAD-oxidase_C: FAD li 88.9 0.4 8.6E-06 45.9 3.6 76 392-483 168-244 (248)
44 PF04030 ALO: D-arabinono-1,4- 88.1 0.95 2.1E-05 44.2 5.7 21 464-484 233-253 (259)
45 PLN02906 xanthine dehydrogenas 85.8 1.2 2.5E-05 53.7 5.7 80 38-121 229-310 (1319)
46 PLN00192 aldehyde oxidase 83.8 2.5 5.4E-05 51.0 7.2 84 37-121 233-317 (1344)
47 TIGR02969 mam_aldehyde_ox alde 82.4 2.9 6.3E-05 50.4 7.1 79 38-120 237-317 (1330)
48 COG1319 CoxM Aerobic-type carb 77.1 7.7 0.00017 38.4 7.0 76 37-116 3-81 (284)
49 COG4981 Enoyl reductase domain 70.9 8 0.00017 41.2 5.5 68 2-74 122-196 (717)
50 COG4630 XdhA Xanthine dehydrog 70.6 9.4 0.0002 38.9 5.7 142 36-189 202-354 (493)
51 KOG4730 D-arabinono-1, 4-lacto 58.1 5.5 0.00012 41.5 1.5 21 464-484 485-505 (518)
52 PRK11282 glcE glycolate oxidas 50.0 10 0.00023 38.8 2.1 22 463-484 323-345 (352)
53 COG4359 Uncharacterized conser 40.4 31 0.00066 31.8 3.3 25 49-73 78-102 (220)
54 KOG3282 Uncharacterized conser 39.6 37 0.0008 31.1 3.7 37 27-65 117-153 (190)
55 TIGR00178 monomer_idh isocitra 36.4 2.4E+02 0.0051 30.9 9.4 131 43-187 308-460 (741)
56 COG1519 KdtA 3-deoxy-D-manno-o 35.5 2.3E+02 0.0049 29.7 9.1 34 36-69 260-293 (419)
57 PF02601 Exonuc_VII_L: Exonucl 35.2 47 0.001 33.4 4.2 56 8-70 20-87 (319)
58 COG0351 ThiD Hydroxymethylpyri 34.6 99 0.0021 30.3 6.0 92 4-122 131-225 (263)
59 cd07033 TPP_PYR_DXS_TK_like Py 33.6 63 0.0014 28.7 4.3 29 39-67 126-154 (156)
60 COG2144 Selenophosphate synthe 31.9 86 0.0019 31.1 5.0 46 9-67 243-289 (324)
61 cd02429 PTH2_like Peptidyl-tRN 31.7 90 0.0019 26.5 4.6 30 36-65 55-84 (116)
62 PF10740 DUF2529: Protein of u 31.2 1.1E+02 0.0025 27.8 5.4 63 39-103 86-149 (172)
63 COG1154 Dxs Deoxyxylulose-5-ph 30.3 3.4E+02 0.0073 29.9 9.5 79 34-117 438-519 (627)
64 PF02779 Transket_pyr: Transke 29.0 82 0.0018 28.6 4.3 31 38-68 139-171 (178)
65 TIGR01676 GLDHase galactonolac 25.8 41 0.00088 36.6 1.9 20 466-485 515-534 (541)
66 PRK04322 peptidyl-tRNA hydrola 25.5 1.6E+02 0.0035 24.8 5.1 38 34-71 45-83 (113)
67 PRK00286 xseA exodeoxyribonucl 25.2 70 0.0015 33.8 3.5 32 38-69 164-203 (438)
68 PLN02465 L-galactono-1,4-lacto 24.9 43 0.00094 36.7 1.9 27 456-485 538-564 (573)
69 PF01981 PTH2: Peptidyl-tRNA h 24.4 1.5E+02 0.0033 24.9 4.9 38 34-71 48-86 (116)
70 cd02407 PTH2_family Peptidyl-t 22.7 1.4E+02 0.003 25.3 4.2 42 28-71 43-85 (115)
71 PF04472 DUF552: Protein of un 22.5 1E+02 0.0023 23.5 3.2 33 39-93 2-34 (73)
72 PF15608 PELOTA_1: PELOTA RNA 22.4 1.1E+02 0.0025 25.2 3.4 34 36-69 55-89 (100)
73 cd07036 TPP_PYR_E1-PDHc-beta_l 21.9 1.3E+02 0.0029 27.1 4.3 29 38-66 136-164 (167)
74 cd05014 SIS_Kpsf KpsF-like pro 21.9 1.4E+02 0.0031 24.9 4.3 32 40-71 54-85 (128)
75 PF01113 DapB_N: Dihydrodipico 21.4 1.2E+02 0.0025 25.8 3.6 36 36-71 67-102 (124)
76 TIGR00283 arch_pth2 peptidyl-t 21.1 2.1E+02 0.0046 24.2 5.0 38 34-71 47-85 (115)
77 cd02430 PTH2 Peptidyl-tRNA hyd 20.4 1.6E+02 0.0034 25.0 4.1 41 28-70 43-84 (115)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.5e-39 Score=339.40 Aligned_cols=190 Identities=19% Similarity=0.289 Sum_probs=169.5
Q ss_pred ccCCCCCCCCccEEEecCCHHHHHHHHHHHH--HCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCC------e-EEc
Q 038259 27 FRFSTPNTPKPLVIITPLDVSQVQAAIKCSK--KHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSE------I-NVD 97 (501)
Q Consensus 27 ~r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~--~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~------i-~~d 97 (501)
..|+......|.+|++|+|++||+++|++|+ +++++|.+||+||++.|.+...+ +++|||++||+ + ++|
T Consensus 55 ~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd 132 (525)
T PLN02441 55 KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVS 132 (525)
T ss_pred cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEc
Confidence 4588888889999999999999999999997 66999999999999998887654 99999999999 3 788
Q ss_pred CCCCEEEEcCCCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-cc
Q 038259 98 AVAKTAWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-RE 176 (501)
Q Consensus 98 ~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~ 176 (501)
.+..+|+|++|++|.+|.+++.++|+. +...+....++|||.++++|+|..+.+||..+|+|++++||++||++++ +.
T Consensus 133 ~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~ 211 (525)
T PLN02441 133 GDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSP 211 (525)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCC
Confidence 899999999999999999999998742 2234556678999999999999999999999999999999999999997 67
Q ss_pred CCCcchHHHhhccccCCceEEEEEEEEEEEecCCeeEEEEEEecc
Q 038259 177 SMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNL 221 (501)
Q Consensus 177 ~~~~dl~~a~rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~ 221 (501)
.+|+|||||++||+ |+|||||++|||++|.|+.+.++.+.|..
T Consensus 212 ~~n~DLF~Av~Ggl--G~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 212 TQNSDLFFAVLGGL--GQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred CCChhHHHhhccCC--CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 78999999999998 99999999999999999977666666653
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.4e-34 Score=307.99 Aligned_cols=192 Identities=20% Similarity=0.293 Sum_probs=169.7
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHH
Q 038259 35 PKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQ 113 (501)
Q Consensus 35 ~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~ 113 (501)
..|.+||+|+|++||+++|++|+++++|+++|||||++.|.+...+ ++++|||++||+| ++|.++.+|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4799999999999999999999999999999999999998776542 5899999999998 7999999999999999999
Q ss_pred HHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe--cc----CCCcchHHHhh
Q 038259 114 LYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD--RE----SMGEDLFWAIR 187 (501)
Q Consensus 114 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~--~~----~~~~dl~~a~r 187 (501)
|+++|.++| +.++...++.++|||.++++++|..+.+||.++|+|++++||++||++++ .. ..++||+|+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999987 55666666778999999999999999999999999999999999999995 11 24689999999
Q ss_pred ccccCCceEEEEEEEEEEEecCCeeEEEEEEecchhhHHHHHHH
Q 038259 188 GGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHK 231 (501)
Q Consensus 188 g~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~~~~~~~~~~~ 231 (501)
||+ |+|||||++|||++|.|+....+.+.|+..+++.+++..
T Consensus 289 Gse--GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 289 GSE--GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred cCC--CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 999 999999999999999999777777777754445444443
No 3
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3e-33 Score=291.59 Aligned_cols=196 Identities=22% Similarity=0.354 Sum_probs=170.4
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcC
Q 038259 29 FSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQA 107 (501)
Q Consensus 29 ~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~ 107 (501)
|+....+.|.+|++|+|++||+++|++|+++++|++++|+|||+.+.... + +++|||++|++| ++|+++++|+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~--gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D--GFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C--eEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 88778899999999999999999999999999999999999999876543 2 899999999997 9999999999999
Q ss_pred CCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-ccCCCcchHHHh
Q 038259 108 GATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-RESMGEDLFWAI 186 (501)
Q Consensus 108 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a~ 186 (501)
|+++.+|.+.|.++|+.++. .|.++.++|||++++|++|. +.+||..+|+|+++++|++||++++ +..+++||||+.
T Consensus 84 G~~l~~L~~~L~~~Gl~l~~-~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a~ 161 (438)
T TIGR01678 84 GIRLYQLHEQLDEHGYSMSN-LGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQAA 161 (438)
T ss_pred CCCHHHHHHHHHHcCCEecC-CCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHHH
Confidence 99999999999999754322 57788899999999999997 6889999999999999999999997 666789999999
Q ss_pred hccccCCceEEEEEEEEEEEecCCeeEEEEEEecchhhHHHHHHHHHHHH
Q 038259 187 RGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVA 236 (501)
Q Consensus 187 rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (501)
+|+. |+|||||++|||++|........ .. ....++++.|++..
T Consensus 162 ~~~~--G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 162 RVSL--GCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHW 204 (438)
T ss_pred hcCC--CceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHh
Confidence 9999 99999999999999987644321 11 23466677776654
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=7.9e-34 Score=300.81 Aligned_cols=197 Identities=21% Similarity=0.326 Sum_probs=169.9
Q ss_pred CCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCc
Q 038259 32 PNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGAT 110 (501)
Q Consensus 32 ~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~ 110 (501)
..+..|.+|++|+|++||+++|++|+++++|+++||+||++.|.+.... ++++|||++||+| ++|+++++|+||||++
T Consensus 51 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~ 129 (499)
T PRK11230 51 AYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVR 129 (499)
T ss_pred ccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCcc
Confidence 4567899999999999999999999999999999999999987665442 4899999999998 9999999999999999
Q ss_pred HHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEec-----cCCCcchHHH
Q 038259 111 LGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDR-----ESMGEDLFWA 185 (501)
Q Consensus 111 ~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~~-----~~~~~dl~~a 185 (501)
+.+|.++|.++|+.+...++....++|||.+++++.|+.+.+||...|+|++++||++||++++. +..++||+|+
T Consensus 130 ~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l 209 (499)
T PRK11230 130 NLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLAL 209 (499)
T ss_pred HHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhh
Confidence 99999999999853333345555678999999999999999999999999999999999999972 1347899999
Q ss_pred hhccccCCceEEEEEEEEEEEecCCeeEEEEEEecchhhHHHHHHH
Q 038259 186 IRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHK 231 (501)
Q Consensus 186 ~rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~~~~~~~~~~~ 231 (501)
++||+ |+|||||++|||++|.|+....+.+.|+..+++.+++..
T Consensus 210 ~~Gs~--GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 210 FTGSE--GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred hccCC--CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 99999 999999999999999999777777777654444444443
No 5
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=5.6e-32 Score=281.74 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=163.2
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcC
Q 038259 29 FSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQA 107 (501)
Q Consensus 29 ~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~ 107 (501)
|+....+.|.+|++|+|++||+++|++|++ |++++|+|||+.+.+.. + +++|||++||+| ++|+++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~--g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D--GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C--CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 888778899999999999999999999974 79999999999875542 2 799999999997 9999999999999
Q ss_pred CCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-ccCCCcchHHHh
Q 038259 108 GATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-RESMGEDLFWAI 186 (501)
Q Consensus 108 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a~ 186 (501)
|+++.+|.+.|.++|+.++..+ .+..++|||.+++|++|.+ ..||..+|+|++++||++||++++ +..+|+|||||+
T Consensus 78 G~~l~~l~~~L~~~G~~l~~~~-~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~ 155 (419)
T TIGR01679 78 GTRLGALGPQLAQRGLGLENQG-DIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAA 155 (419)
T ss_pred CCCHHHHHHHHHHcCCccccCC-CCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHH
Confidence 9999999999999986554334 4455789999999999975 579999999999999999999997 666789999999
Q ss_pred hccccCCceEEEEEEEEEEEecCCeeEEEEEEecchhhHHHHHHHHHHHHH
Q 038259 187 RGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVAN 237 (501)
Q Consensus 187 rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (501)
|||+ |+|||||++|||++|.......... . ...++++.+.++..
T Consensus 156 ~g~~--G~lGVIt~vtl~~~p~~~~~~~~~~-~----~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 156 RVSL--GALGVISQVTLQTVALFRLRRRDWR-R----PLAQTLERLDEFVD 199 (419)
T ss_pred HhCC--CceEEEEEEEEEeecceEeEEEEEe-c----CHHHHHHHHHHHHh
Confidence 9999 9999999999999998864332111 1 23445555665554
No 6
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=7.9e-32 Score=286.38 Aligned_cols=180 Identities=19% Similarity=0.231 Sum_probs=158.5
Q ss_pred cCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEc-CCCCCCCCCcccC-CCEEEEEccCCCC-eEEcCCCCEEE
Q 038259 28 RFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRS-GGHDFEGLSYVSQ-VPFVVIDLLNLSE-INVDAVAKTAW 104 (501)
Q Consensus 28 r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~g-gGh~~~g~~~~~~-~~~vvIdl~~l~~-i~~d~~~~~v~ 104 (501)
.|+....+.|.+|++|+|++||+++|++|+++++||+++| +||++.+.+.... +++++|||++||+ +++|.++++|+
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEE
Confidence 3999999999999999999999999999999999999996 6999876544321 1369999999999 59999999999
Q ss_pred EcCCCcHHHHHHHHHHhCCCceecc-CCCCcccccccccCCCCCCcc-cccccccccEeEEEEEecCC------cEEe-c
Q 038259 105 VQAGATLGQLYYRIAEKSKNLGFPA-GLCPTVGAGGHISGGGYGVML-RKFGLAADNIVDAHLIDANG------RFLD-R 175 (501)
Q Consensus 105 v~~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~g~~~-~~~G~~~d~v~~~~vV~~~G------~v~~-~ 175 (501)
|+||+++.+|.+.|.++|+ .++. +....++|||.+++|++|... ++||..+|+|++++||++|| ++++ +
T Consensus 103 V~AG~~l~~L~~~L~~~Gl--al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s 180 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAGL--ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILS 180 (557)
T ss_pred ECCCCcHHHHHHHHHHcCC--EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeC
Confidence 9999999999999999975 4443 345668999999999999866 58899999999999999999 7776 6
Q ss_pred cCCCcchHHHhhccccCCceEEEEEEEEEEEecCCe
Q 038259 176 ESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPST 211 (501)
Q Consensus 176 ~~~~~dl~~a~rg~~~~g~~Givt~~t~k~~p~~~~ 211 (501)
..+|+|||||+|||+ |+|||||++|||++|.+..
T Consensus 181 ~~~~~dLf~a~rgsl--G~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 181 EGDTPNEFNAAKVSL--GVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CCCCHHHHHhhccCC--CccEeeeEEEEEEEccccc
Confidence 667899999999999 9999999999999998763
No 7
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.2e-32 Score=290.13 Aligned_cols=186 Identities=27% Similarity=0.399 Sum_probs=166.1
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATL 111 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~ 111 (501)
....|.+++.|+|++||+++|++|+++++||++||+||++.|.+... . +++|||++||+| ++|+++.+|+|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 45689999999999999999999999999999999999999877765 2 899999999999 79999999999999999
Q ss_pred HHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe--c----cCCCcchHHH
Q 038259 112 GQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD--R----ESMGEDLFWA 185 (501)
Q Consensus 112 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~--~----~~~~~dl~~a 185 (501)
.+|.++|.++|+.+.+.+++..+++|||+++++++|..+.+||...|+|+++++|++||++++ . +..+.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999986555555665579999999999999999999999999999999999999996 2 3456899999
Q ss_pred hhccccCCceEEEEEEEEEEEecCCeeEEEEEEecch
Q 038259 186 IRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLE 222 (501)
Q Consensus 186 ~rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~~ 222 (501)
..||. |+|||||++|+|++|.|+........+...
T Consensus 186 ~iGs~--GtlGiit~~tl~l~p~~~~~~~~~~~~~~~ 220 (459)
T COG0277 186 FVGSE--GTLGIITEATLKLLPLPETKATAVAGFPSI 220 (459)
T ss_pred cccCC--ccceEEEEEEEEeccCCchheEEEEeCCCH
Confidence 99999 999999999999999988766655555443
No 8
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=3.3e-32 Score=283.73 Aligned_cols=190 Identities=22% Similarity=0.305 Sum_probs=163.4
Q ss_pred EEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHHHHH
Q 038259 40 IITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLYYRI 118 (501)
Q Consensus 40 vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l 118 (501)
||+|+|++||+++|++|+++++|++++|+|||+.|.+...+ ++++|||++||+| ++|+++.+++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987665443 4899999999998 999999999999999999999999
Q ss_pred HHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-c-----cCCCcchHHHhhccccC
Q 038259 119 AEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-R-----ESMGEDLFWAIRGGGIG 192 (501)
Q Consensus 119 ~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~-----~~~~~dl~~a~rg~~~~ 192 (501)
.++|+.+++.+++...++|||.+++++.|..+.+||...|+|++++||++||++++ . ...++||++.+.|+.
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-- 157 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE-- 157 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC--
Confidence 99985443345555567899999999999999999999999999999999999996 1 334689999999999
Q ss_pred CceEEEEEEEEEEEecCCeeEEEEEEecchhhHHHHHHHH
Q 038259 193 ASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKW 232 (501)
Q Consensus 193 g~~Givt~~t~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (501)
|+|||||+++||++|.|+....+.+.|+..+++.+++..+
T Consensus 158 GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 158 GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 9999999999999999997766666666544444444433
No 9
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3.9e-32 Score=284.86 Aligned_cols=197 Identities=19% Similarity=0.242 Sum_probs=170.5
Q ss_pred cCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEc
Q 038259 28 RFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQ 106 (501)
Q Consensus 28 r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~ 106 (501)
+|++...+.|..+++|+|++||+++|++|++++++|+++|+|||+.+.+... +.+|||++||+| ++|.++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 4999899999999999999999999999999999999999999999877654 457999999997 999999999999
Q ss_pred CCCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-ccCCCcchHHH
Q 038259 107 AGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-RESMGEDLFWA 185 (501)
Q Consensus 107 ~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a 185 (501)
||+++.+|.+.|.++|+.+. ..|.++.++|||.+++|+||... +||..+|+|++++||+++|+++. +..+|+|||||
T Consensus 130 AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg~-~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~A 207 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTGA-KLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFL 207 (541)
T ss_pred CCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCCC-CCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHH
Confidence 99999999999999975332 24778889999999999999865 79999999999999999999997 66678999999
Q ss_pred hhccccCCceEEEEEEEEEEEecCCeeEEEEEEecchhhHHHHHHHHHHHH
Q 038259 186 IRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNLEQNATKIVHKWQYVA 236 (501)
Q Consensus 186 ~rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (501)
.|||. |+|||||++|||+.|.+..... .+. ..+.++++.+.++.
T Consensus 208 argsl--G~LGVItevTLr~~Pa~~l~~~---~~~--~~~~e~l~~~~~~~ 251 (541)
T TIGR01676 208 ARCGL--GGLGVVAEVTLQCVERQELVEH---TFI--SNMKDIKKNHKKFL 251 (541)
T ss_pred HhcCC--CceEeEEEEEEEEEeccceeEE---EEe--cCHHHHHHHHHHHH
Confidence 99999 9999999999999999874322 111 13455666666654
No 10
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=2.3e-30 Score=256.31 Aligned_cols=178 Identities=21% Similarity=0.359 Sum_probs=152.8
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcccCCCEEEEEcc---CCCCe-EEcCCCCE
Q 038259 29 FSTPNTPKPLVIITPLDVSQVQAAIKCSKKH--GLQIRLRSGGHDFEGLSYVSQVPFVVIDLL---NLSEI-NVDAVAKT 102 (501)
Q Consensus 29 ~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~--~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~---~l~~i-~~d~~~~~ 102 (501)
|.......|.+|..|+|++||++++|.|... ++||.+||+|||..|.+.... +|++|.|+ .|+++ .+..+...
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~y 134 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLY 134 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccce
Confidence 4445567999999999999999999999999 899999999999999887632 47665543 45665 55666799
Q ss_pred EEEcCCCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-ccCCCcc
Q 038259 103 AWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-RESMGED 181 (501)
Q Consensus 103 v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~d 181 (501)
|.|.||..|-+|.+++.++|+.-.++.... ..+|||.++.+|.|..+.+||...+||++++||+++|++++ ++..|++
T Consensus 135 vdV~~g~~Widll~~t~e~GL~p~swtDyl-~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~ 213 (505)
T KOG1231|consen 135 VDVSAGTLWIDLLDYTLEYGLSPFSWTDYL-PLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSN 213 (505)
T ss_pred EEeeCChhHHHHHHHHHHcCCCccCcCCcc-ceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCce
Confidence 999999999999999999975212222222 37899999999999999999999999999999999999997 7778999
Q ss_pred hHHHhhccccCCceEEEEEEEEEEEecCC
Q 038259 182 LFWAIRGGGIGASFGVIVAWKVRLVPVPS 210 (501)
Q Consensus 182 l~~a~rg~~~~g~~Givt~~t~k~~p~~~ 210 (501)
||+++.||. |+|||||+++++|+|+|.
T Consensus 214 lf~~vlGgl--GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 214 LFFLVLGGL--GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeeccC--cceeeEEEEEEEeccCCc
Confidence 999999999 999999999999999994
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.2e-29 Score=255.66 Aligned_cols=169 Identities=22% Similarity=0.308 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEcCCC-CCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHHHHHHHhC
Q 038259 45 DVSQVQAAIKCSKKHGLQIRLRSGGH-DFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLYYRIAEKS 122 (501)
Q Consensus 45 s~~~v~~~v~~a~~~~~~~~v~ggGh-~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g 122 (501)
.++||+++|++|+++++|++++|||| ++.+... . +++|||++||+| ++|+++.+|+|+||+++.+|.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~--~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL--A--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC--C--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 4556532 2 579999999998 9999999999999999999999999998
Q ss_pred CCceeccC-CCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEec------cCCCcchHHHhhccccCCce
Q 038259 123 KNLGFPAG-LCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLDR------ESMGEDLFWAIRGGGIGASF 195 (501)
Q Consensus 123 ~~l~~~~g-~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~~------~~~~~dl~~a~rg~~~~g~~ 195 (501)
..+++.++ .+..++|||++++|++|..+.+||..+|+|+++++|++||++++. +..++||||+++||. |+|
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~--GtL 156 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL--GTL 156 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC--chh
Confidence 65555443 444588999999999999999999999999999999999999962 335789999999999 999
Q ss_pred EEEEEEEEEEEecCCeeEEEEEEe
Q 038259 196 GVIVAWKVRLVPVPSTVTRCLVTR 219 (501)
Q Consensus 196 Givt~~t~k~~p~~~~~~~~~~~~ 219 (501)
||||++|||++|.|+....+.+.+
T Consensus 157 GVitevtlkl~P~p~~~~t~~~~~ 180 (352)
T PRK11282 157 GVLLEVSLKVLPRPRAELTLRLEM 180 (352)
T ss_pred hhheEEEEEEEecCceEEEEEEec
Confidence 999999999999998765544444
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=1.4e-28 Score=260.03 Aligned_cols=178 Identities=20% Similarity=0.277 Sum_probs=159.0
Q ss_pred cCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEc
Q 038259 28 RFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQ 106 (501)
Q Consensus 28 r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~ 106 (501)
+|++...+.|..++.|+|++||+++|++|+++++||+++|+|||+.+..... +.+|||++|++| ++|.+.++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4999999999999999999999999999999999999999999998776654 346899999997 999999999999
Q ss_pred CCCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-ccCCCcchHHH
Q 038259 107 AGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-RESMGEDLFWA 185 (501)
Q Consensus 107 ~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a 185 (501)
||+++.+|.+.|.++|+.+.. .|.....+|||.+++|+||... .+|..+|+|++++||+++|++++ +..+++||||+
T Consensus 165 AG~~l~~L~~~L~~~GLal~n-~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~a 242 (573)
T PLN02465 165 AGARVQQVVEALRPHGLTLQN-YASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFRL 242 (573)
T ss_pred cCCCHHHHHHHHHHcCCEecc-CCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHhH
Confidence 999999999999999854433 2455667899999999999865 68889999999999999999887 66678999999
Q ss_pred hhccccCCceEEEEEEEEEEEecCCee
Q 038259 186 IRGGGIGASFGVIVAWKVRLVPVPSTV 212 (501)
Q Consensus 186 ~rg~~~~g~~Givt~~t~k~~p~~~~~ 212 (501)
.|++. |.|||||++|||+.|.++..
T Consensus 243 ar~gl--G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 243 ARCGL--GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred hhccC--CCCcEEEEEEEEEEecCceE
Confidence 99998 99999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=3.3e-27 Score=209.51 Aligned_cols=136 Identities=34% Similarity=0.552 Sum_probs=124.6
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCC-eEEcCCCCEEEEcCCCcHHHHH
Q 038259 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSE-INVDAVAKTAWVQAGATLGQLY 115 (501)
Q Consensus 37 p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~-i~~d~~~~~v~v~~G~~~~~l~ 115 (501)
|.+|++|+|++||+++|++|+++++|+.++|+||++.+.+... ++++|||++|++ +++|++.++++|+||+++.+|+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 8899999999999999999999999999999999999776633 499999999999 5999999999999999999999
Q ss_pred HHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe
Q 038259 116 YRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD 174 (501)
Q Consensus 116 ~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~ 174 (501)
++|.++|+.+.+.++.+..++|||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999875444457888888999999999999999999999999999999999999985
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=3.9e-25 Score=220.30 Aligned_cols=164 Identities=23% Similarity=0.257 Sum_probs=137.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccC-CCCeEEcCCCCEEEEcCCCcH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLN-LSEINVDAVAKTAWVQAGATL 111 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~-l~~i~~d~~~~~v~v~~G~~~ 111 (501)
....|.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ +++|||++ |+.|++ ++.+++|+||+.+
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~ 102 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPL 102 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcH
Confidence 456899999999999999999999999999999999999876554433 89999998 999855 4568999999999
Q ss_pred HHHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecCCcEEeccCCCcchHHHhhcc
Q 038259 112 GQLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGG 189 (501)
Q Consensus 112 ~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~ 189 (501)
.+|.++|.++|+ ++++..|.+++ | ||+.+++++.|| ..+|+|+++++|++||++++.. +.|++|+||++
T Consensus 103 ~~L~~~l~~~Gl~gle~~~gipGT--V-----GGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s 173 (298)
T PRK13905 103 IKLARFAAEAGLSGLEFAAGIPGT--V-----GGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHS 173 (298)
T ss_pred HHHHHHHHHcCCCcchhccCCCcc--h-----hHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccc
Confidence 999999999987 66667776665 3 355555566676 7899999999999999999743 35999999999
Q ss_pred ccCCceEEEEEEEEEEEecC
Q 038259 190 GIGASFGVIVAWKVRLVPVP 209 (501)
Q Consensus 190 ~~~g~~Givt~~t~k~~p~~ 209 (501)
.+.+.+||||+++||++|..
T Consensus 174 ~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 174 ALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred cCCCCCEEEEEEEEEEcCCC
Confidence 83435899999999999963
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=2.6e-24 Score=222.49 Aligned_cols=196 Identities=17% Similarity=0.187 Sum_probs=161.3
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCC----CEEEEEccCCCCe-EEcCCCCEEEEcC
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQV----PFVVIDLLNLSEI-NVDAVAKTAWVQA 107 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~----~~vvIdl~~l~~i-~~d~~~~~v~v~~ 107 (501)
....|.+||+|.|++||+++|++|+++++||++||||++..|.+.+... ++|+|||++||+| ++| ++.+++|+|
T Consensus 35 ~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVeP 113 (564)
T PRK11183 35 GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALP 113 (564)
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeC
Confidence 3558999999999999999999999999999999999999988876532 3899999999998 788 567899999
Q ss_pred CCcHHHHHHHHHHhCCCceeccCC-CCcccccccccCCCCCCcccccccccccEeEEEEEecCCcE-------Ee--c--
Q 038259 108 GATLGQLYYRIAEKSKNLGFPAGL-CPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRF-------LD--R-- 175 (501)
Q Consensus 108 G~~~~~l~~~l~~~g~~l~~~~g~-~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v-------~~--~-- 175 (501)
|+++.+|.++|.++|+-.....|+ |-.++|||.++.++.|....+||...+.++. ++|+++|++ +. .
T Consensus 114 GVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~ 192 (564)
T PRK11183 114 GTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETP 192 (564)
T ss_pred CCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCH
Confidence 999999999999997532221233 2234688999999999999999999999998 999999999 32 1
Q ss_pred -------cCCCc----------------------------------chHHHh--hccccCCceEEEEEEEEEEEecCCee
Q 038259 176 -------ESMGE----------------------------------DLFWAI--RGGGIGASFGVIVAWKVRLVPVPSTV 212 (501)
Q Consensus 176 -------~~~~~----------------------------------dl~~a~--rg~~~~g~~Givt~~t~k~~p~~~~~ 212 (501)
+..+. |+...+ .||. |.+||| +++++++|.|+..
T Consensus 193 e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse--GkLgV~-avrLdtfp~p~~~ 269 (564)
T PRK11183 193 EEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA--GKLAVF-AVRLDTFPAEKNT 269 (564)
T ss_pred HHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC--ceEEEE-EEEeccccCCCcc
Confidence 11233 777777 8888 999999 9999999999998
Q ss_pred EEEEEEecchhhHHHHHHHHH
Q 038259 213 TRCLVTRNLEQNATKIVHKWQ 233 (501)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ 233 (501)
..|.+.++..+.+.++...+.
T Consensus 270 ~vf~ig~n~~~~~~~~rr~il 290 (564)
T PRK11183 270 QVFYIGTNDPAVLTEIRRHIL 290 (564)
T ss_pred eEEEEeCCCHHHHHHHHHHHH
Confidence 888888876655555554443
No 16
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.92 E-value=4.9e-24 Score=206.52 Aligned_cols=188 Identities=21% Similarity=0.296 Sum_probs=172.7
Q ss_pred cccccCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCE
Q 038259 24 IQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKT 102 (501)
Q Consensus 24 ~~n~r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~ 102 (501)
.+|..|...++..-..+..|.|+++|++++++|+++++.|++.||-++..|.|.+.- +.|||+|.+||+| ++|+-.++
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGi 155 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGI 155 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccce
Confidence 467789999999999999999999999999999999999999999999988887764 3799999999998 89999999
Q ss_pred EEEcCCCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe------cc
Q 038259 103 AWVQAGATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD------RE 176 (501)
Q Consensus 103 v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~------~~ 176 (501)
+++++|+.+.++..+|++.|+.+++..|.-+++-|||.+++++.|..--+||...-+|+++|+|+|+|+|+. .+
T Consensus 156 l~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKD 235 (511)
T KOG1232|consen 156 LKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKD 235 (511)
T ss_pred EEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhccc
Confidence 999999999999999999987777777888888899999999999999999999999999999999999985 45
Q ss_pred CCCcchHHHhhccccCCceEEEEEEEEEEEecCCeeEE
Q 038259 177 SMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTR 214 (501)
Q Consensus 177 ~~~~dl~~a~rg~~~~g~~Givt~~t~k~~p~~~~~~~ 214 (501)
.++.|+-..+.|+. |++||||.+++-+.|.|+.+..
T Consensus 236 NTgydlkhLFIGSE--GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 236 NTGYDLKHLFIGSE--GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred CccccchhheecCC--ceeeEEeeEEEeecCCCcceeE
Confidence 56789999999999 9999999999999999986543
No 17
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.90 E-value=1.2e-22 Score=201.71 Aligned_cols=184 Identities=26% Similarity=0.278 Sum_probs=158.7
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcC
Q 038259 29 FSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQA 107 (501)
Q Consensus 29 ~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~ 107 (501)
|..+..++..-+-+|+|++||.++|+.|++++.++++.|.||+..+..+.+ |.+|+|.+||++ ++|++.++|||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 334455566667779999999999999999999999999999999887755 699999999997 9999999999999
Q ss_pred CCcHHHHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-ccCCCcchHHHh
Q 038259 108 GATLGQLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-RESMGEDLFWAI 186 (501)
Q Consensus 108 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a~ 186 (501)
|+++.||.+++++.|+-|.. .+....++|||+++.|.||.....|+.....+....++.++|.++. ++...||+|.|.
T Consensus 119 GirlrQLie~~~~~GlsL~~-~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AA 197 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLGLSLPN-APSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAA 197 (518)
T ss_pred CcCHHHHHHHHHhcCccccC-CCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhh
Confidence 99999999999998764433 3566668899999999999988778888778888888889998776 777789999999
Q ss_pred hccccCCceEEEEEEEEEEEecCCeeEEEEEE
Q 038259 187 RGGGIGASFGVIVAWKVRLVPVPSTVTRCLVT 218 (501)
Q Consensus 187 rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~ 218 (501)
+-|. |-+|||.++||++.|.-+...++.++
T Consensus 198 kvSL--G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 198 KVSL--GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred hhcc--cceeEEEEEEEEEEecceeeeEEEEe
Confidence 9999 99999999999999998876665553
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.89 E-value=4.3e-23 Score=205.38 Aligned_cols=163 Identities=17% Similarity=0.231 Sum_probs=138.3
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEEEEcCCCcHH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLG 112 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 112 (501)
....|++++.|+|++||++++++|+++++|+.++|+|||++..+.+.+ +++|+|++|+.|+++ +.+++|+||+.+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 466899999999999999999999999999999999999885554443 899999999999876 4689999999999
Q ss_pred HHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecCCcEEeccCCCcchHHHhhccc
Q 038259 113 QLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGG 190 (501)
Q Consensus 113 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 190 (501)
+|.+++.++|+ +++++.|.++++| | +..++++.|| ...|.+.+++|+++||++++... .|+.|+||.+.
T Consensus 109 ~L~~~~~~~gl~Gle~~~giPGtVG--G-----av~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~--~e~~f~YR~s~ 179 (305)
T PRK12436 109 DVSRIALDHNLTGLEFACGIPGSVG--G-----ALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK--EAFEFGYRKSV 179 (305)
T ss_pred HHHHHHHHcCCccchhhcCCccchh--H-----HHHhcCccchhehheeeeEEEEEeCCCCEEEEEH--HHhcCcCCCCc
Confidence 99999999987 7788888888744 4 4444455577 56788999999999999997443 58999999997
Q ss_pred cCCceEEEEEEEEEEEec
Q 038259 191 IGASFGVIVAWKVRLVPV 208 (501)
Q Consensus 191 ~~g~~Givt~~t~k~~p~ 208 (501)
|.....||++++||+.+.
T Consensus 180 ~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 180 FANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCCEEEEEEEEEEcCC
Confidence 555568999999999874
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.88 E-value=1.9e-22 Score=199.10 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=138.1
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEEEEcCCCcHH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLG 112 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 112 (501)
....|.++++|+|++||++++++|+++++|+.|+|+|||.+..+...+ +++|++++|+.+.+++ +.+++|+||+.+.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 455899999999999999999999999999999999999987776554 8999999999887766 5799999999999
Q ss_pred HHHHHHHHhCCCceeccCCCCcccccccccCCCCCCcccccccccc-cEeEEEEEecCCcEEeccCCCcchHHHhhcccc
Q 038259 113 QLYYRIAEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAAD-NIVDAHLIDANGRFLDRESMGEDLFWAIRGGGI 191 (501)
Q Consensus 113 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d-~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~ 191 (501)
+|.+++.++|+ .|.+..+|+.| +.||+.+++++.||..++ .|+++++|++||++++... .|+.|+||.|.|
T Consensus 86 ~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCcccc
Confidence 99999999986 24444445545 356788888899998764 7899999999999987443 599999999986
Q ss_pred CCce-EEEEEEEEEEEe
Q 038259 192 GASF-GVIVAWKVRLVP 207 (501)
Q Consensus 192 ~g~~-Givt~~t~k~~p 207 (501)
.... .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 5544 799999999844
No 20
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=4.3e-22 Score=201.11 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=139.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEEEEcCCCcHH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLG 112 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 112 (501)
....+++++.|+|++||++++++|+++++|+.|+|+|||.+..+.+.+ ++||+++ ++.++++.++.+|+|+||+.|.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 456899999999999999999999999999999999999886665454 8999997 5889887666799999999999
Q ss_pred HHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecC-CcEEeccCCCcchHHHhhcc
Q 038259 113 QLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDAN-GRFLDRESMGEDLFWAIRGG 189 (501)
Q Consensus 113 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~-G~v~~~~~~~~dl~~a~rg~ 189 (501)
+|.+++.++|+ ||++..|+++|||.+. -++.+.|| ...|.|.++++++.+ |++++.. +.||+|+||+|
T Consensus 106 ~l~~~a~~~GL~GlE~laGIPGTVGGAv-------~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S 176 (363)
T PRK13903 106 DVVARTVEAGLGGLECLSGIPGSAGATP-------VQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTS 176 (363)
T ss_pred HHHHHHHHcCCccccccCCCCcchhhHh-------hcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceecccc
Confidence 99999999998 7999999999976333 33444455 568999999999965 9998744 46999999998
Q ss_pred ccCC-ceEEEEEEEEEEEecC
Q 038259 190 GIGA-SFGVIVAWKVRLVPVP 209 (501)
Q Consensus 190 ~~~g-~~Givt~~t~k~~p~~ 209 (501)
.|.+ +++|||+++||++|..
T Consensus 177 ~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 177 VLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred ccCCCCCEEEEEEEEEEEcCC
Confidence 6555 3899999999999863
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=6.5e-22 Score=196.49 Aligned_cols=163 Identities=21% Similarity=0.229 Sum_probs=131.0
Q ss_pred CCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccC-CCCeEEcCCCCEEEEcCCCc
Q 038259 32 PNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLN-LSEINVDAVAKTAWVQAGAT 110 (501)
Q Consensus 32 ~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~-l~~i~~d~~~~~v~v~~G~~ 110 (501)
.....|++++.|+|++||++++++|+++++|+.++|+|||.+..+.+.+ +++|++++ ++.+..+ +.+++|+||+.
T Consensus 31 ~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~ 106 (302)
T PRK14652 31 RVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAP 106 (302)
T ss_pred ecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCc
Confidence 3566999999999999999999999999999999999999875444343 89999977 5556544 46999999999
Q ss_pred HHHHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCccc-ccccccccEeEEEEEecCCcEEeccCCCcchHHHhhc
Q 038259 111 LGQLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLR-KFGLAADNIVDAHLIDANGRFLDRESMGEDLFWAIRG 188 (501)
Q Consensus 111 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~-~~G~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg 188 (501)
+.+|.+++.++|+ ++++..|.++ +.||+..++++ +||.++|+|+++++|+++| ++... ..|+.|+||+
T Consensus 107 ~~~L~~~~~~~GL~GlE~l~gIPG-------TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~ 176 (302)
T PRK14652 107 ISRLPARAHAHGLVGMEFLAGIPG-------TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRT 176 (302)
T ss_pred HHHHHHHHHHcCCcccccccCCCc-------chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccce
Confidence 9999999999986 4555555544 33455566654 6678999999999999999 44322 3599999999
Q ss_pred cccCCceEEEEEEEEEEEecC
Q 038259 189 GGIGASFGVIVAWKVRLVPVP 209 (501)
Q Consensus 189 ~~~~g~~Givt~~t~k~~p~~ 209 (501)
+.|++ .||||+++||++|..
T Consensus 177 s~~~~-~~II~~a~~~L~~~~ 196 (302)
T PRK14652 177 CRLPP-GAVITRVEVRLRPGD 196 (302)
T ss_pred eccCC-CeEEEEEEEEEecCC
Confidence 87554 489999999999954
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=6.4e-22 Score=196.97 Aligned_cols=162 Identities=20% Similarity=0.228 Sum_probs=135.3
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEEEEcCCCcHHH
Q 038259 34 TPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLGQ 113 (501)
Q Consensus 34 ~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~~ 113 (501)
...+.+++.|+|++||+++|++|+++++|+.++|+|||.+..+.+.+ +++|++++|++|+++. .+++||||+.+.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~ 109 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIID 109 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHH
Confidence 45799999999999999999999999999999999999886555454 8999999999998763 5899999999999
Q ss_pred HHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecCCcEEeccCCCcchHHHhhcccc
Q 038259 114 LYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGGI 191 (501)
Q Consensus 114 l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~ 191 (501)
|.+++.++|+ +++++.|.+++ .||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||.+.|
T Consensus 110 l~~~~~~~Gl~GlE~~~gIPGt-------VGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~~ 180 (307)
T PRK13906 110 VSRVARDYALTGLEFACGIPGS-------IGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSII 180 (307)
T ss_pred HHHHHHHcCCccchhhcCCCcc-------HhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCcccC
Confidence 9999999986 45555554443 4466666677775 88999999999999999997443 589999999875
Q ss_pred CCceEEEEEEEEEEEec
Q 038259 192 GASFGVIVAWKVRLVPV 208 (501)
Q Consensus 192 ~g~~Givt~~t~k~~p~ 208 (501)
...--||++++|++.|.
T Consensus 181 ~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 181 QKEHLVVLEAAFTLAPG 197 (307)
T ss_pred CCCCEEEEEEEEEECCC
Confidence 54445999999999873
No 23
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.82 E-value=1.5e-19 Score=175.79 Aligned_cols=187 Identities=21% Similarity=0.275 Sum_probs=160.5
Q ss_pred CCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccCCC--EEEEEccCCCCe-EEcCCCCEEE
Q 038259 29 FSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEG-LSYVSQVP--FVVIDLLNLSEI-NVDAVAKTAW 104 (501)
Q Consensus 29 ~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~--~vvIdl~~l~~i-~~d~~~~~v~ 104 (501)
|.......|+.||.|+..+||.++|+.|.+|++-+.+.|||++..+ ..++.+.. -+-+|++.||+| =+|.++.++.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 4556678999999999999999999999999999999999999874 55544322 344788999998 7899999999
Q ss_pred EcCCCcHHHHHHHHHHhCCCceeccCCCC----cccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe-----c
Q 038259 105 VQAGATLGQLYYRIAEKSKNLGFPAGLCP----TVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD-----R 175 (501)
Q Consensus 105 v~~G~~~~~l~~~l~~~g~~l~~~~g~~~----~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-----~ 175 (501)
+++|+.-.+|.+.|.+.|+ ..|..| -.++||.+++.+.||--..||.+-|-|+.+++|+|.|.+.. .
T Consensus 233 ~eaGIvGQ~LERqL~~~G~----t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PR 308 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGF----TCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPR 308 (613)
T ss_pred EecCcchHHHHHHHhhcCc----ccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCc
Confidence 9999999999999999875 334433 35789999999999999999999999999999999998874 3
Q ss_pred cCCCcchHHHhhccccCCceEEEEEEEEEEEecCCeeEEEEEEecc
Q 038259 176 ESMGEDLFWAIRGGGIGASFGVIVAWKVRLVPVPSTVTRCLVTRNL 221 (501)
Q Consensus 176 ~~~~~dl~~a~rg~~~~g~~Givt~~t~k~~p~~~~~~~~~~~~~~ 221 (501)
-+.+||+-.-+.|+. |++||||++|+|+.|.|+......+.|+.
T Consensus 309 mS~GPDihh~IlGSE--GTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 309 MSSGPDIHHIILGSE--GTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred ccCCCCcceEEeccC--cceeEEEEEEEEEeechhhhhcCccccCc
Confidence 356899999999999 99999999999999999876666666664
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=1.4e-19 Score=179.31 Aligned_cols=166 Identities=18% Similarity=0.184 Sum_probs=133.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCC-CeEEcCCCCEEEEcCCCcH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLS-EINVDAVAKTAWVQAGATL 111 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~-~i~~d~~~~~v~v~~G~~~ 111 (501)
.....++++.|++++||++++++|+++++|+.++|+|||.+..+.+.+ +++|++++++ .+..+.+..+++|+||+.|
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 455889999999999999999999999999999999999998887665 9999998754 6666655559999999999
Q ss_pred HHHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecCCcEEeccCCCcchHHHhhcc
Q 038259 112 GQLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGG 189 (501)
Q Consensus 112 ~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~ 189 (501)
.+|..++.++|+ ++++..|+++| .||+.-++.+.|| ..+|+|.++++++.+|++++... .||+|+||.|
T Consensus 95 ~~l~~~~~~~GL~GlE~l~GIPGT-------vGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~S 165 (295)
T PRK14649 95 AGTARRLAAQGWAGLEWAEGLPGT-------IGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRTS 165 (295)
T ss_pred HHHHHHHHHcCCccccccCCCCcc-------hhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCccccee
Confidence 999999999986 45555554443 3343334444454 77899999999999999987433 4999999998
Q ss_pred ccCCc--------eEEEEEEEEEEEecC
Q 038259 190 GIGAS--------FGVIVAWKVRLVPVP 209 (501)
Q Consensus 190 ~~~g~--------~Givt~~t~k~~p~~ 209 (501)
.|... --||++++|++.|..
T Consensus 166 ~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 166 VLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred ecccccccccccCCeEEEEEEEEECCCC
Confidence 74443 239999999998753
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=6.8e-19 Score=173.84 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=136.6
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEEEEcCCCcHH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLG 112 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 112 (501)
.....++++.|++++||++++++|++ ++|+.++|+|+|.+..+.+.+ ++||.+++|+.++++. ..++|+||+.+.
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~~--~~v~v~AG~~l~ 104 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVDN--DKIICESGLSLK 104 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEeC--CEEEEeCCCcHH
Confidence 45578899999999999999999999 999999999999998887665 8999998899998863 589999999999
Q ss_pred HHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCccccccc-ccccEeEEEEEecCCcEEeccCCCcchHHHhhccc
Q 038259 113 QLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFGL-AADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGG 190 (501)
Q Consensus 113 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 190 (501)
+|..++.++|+ ||++..|+++| |||. .-++++.||. ..|.|.++++++ +|++++... .|+.|.||.+.
T Consensus 105 ~L~~~~~~~GL~GlE~l~gIPGT--VGGA-----v~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~--~e~~f~YR~S~ 174 (297)
T PRK14653 105 KLCLVAAKNGLSGFENAYGIPGS--VGGA-----VYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK--NEIKFSYRNSI 174 (297)
T ss_pred HHHHHHHHCCCcchhhhcCCchh--HHHH-----HHHhCccCchhhheeEEEEEEEC-CCEEEEEch--hhccccCcccc
Confidence 99999999998 78888888777 4444 4455556886 789999999999 788886433 49999999987
Q ss_pred cCCc-eEEEEEEEEEEEecC
Q 038259 191 IGAS-FGVIVAWKVRLVPVP 209 (501)
Q Consensus 191 ~~g~-~Givt~~t~k~~p~~ 209 (501)
|... --|||+++||+.|..
T Consensus 175 ~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 175 FKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCCCCcEEEEEEEEEEecCC
Confidence 5542 239999999998853
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=4e-18 Score=165.08 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=146.9
Q ss_pred CCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEEEEcCCCcH
Q 038259 32 PNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATL 111 (501)
Q Consensus 32 ~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~ 111 (501)
+.....+.++.|++++|++++++++.++++|+.+.|+|+|.+..+.+.+ +++|.+.+++.++++.+...+++++|+.|
T Consensus 16 riGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~ 93 (291)
T COG0812 16 RIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPW 93 (291)
T ss_pred ecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcH
Confidence 3566889999999999999999999999999999999999887776665 99999999999988877779999999999
Q ss_pred HHHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCccccccc-ccccEeEEEEEecCCcEEeccCCCcchHHHhhcc
Q 038259 112 GQLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFGL-AADNIVDAHLIDANGRFLDRESMGEDLFWAIRGG 189 (501)
Q Consensus 112 ~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~ 189 (501)
.+|.+++.++|+ ||++..|+++||| |+.-|+.+.||. +.|.+.++++++.+|++.+... .||-|+||-|
T Consensus 94 ~~l~~~~~~~gl~GlE~l~gIPGsvG-------gav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~--~el~f~YR~S 164 (291)
T COG0812 94 HDLVRFALENGLSGLEFLAGIPGSVG-------GAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA--EELGFGYRTS 164 (291)
T ss_pred HHHHHHHHHcCCcchhhhcCCCcccc-------hhhhccCcccccchheeEEEEEEEcCCCCEEEEEH--HHhCcccccC
Confidence 999999999998 8999999998855 566677778885 6799999999999999997443 5999999999
Q ss_pred ccCCceEEEEEEEEEEEec
Q 038259 190 GIGASFGVIVAWKVRLVPV 208 (501)
Q Consensus 190 ~~~g~~Givt~~t~k~~p~ 208 (501)
.|.....||++++|++.|-
T Consensus 165 ~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 165 PFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred cCCCCCEEEEEEEEEeCCC
Confidence 8666669999999999985
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=1e-17 Score=164.93 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=139.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc-cCCCEEEEEccCCCCeEEcCCCCEEEEcCCCcH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYV-SQVPFVVIDLLNLSEINVDAVAKTAWVQAGATL 111 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~-~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~ 111 (501)
.....+.++.|+|++|+++++++++++++|+.+.|+|+|.+..+.+ .+ +++|.+.+|+.++++. ..++|+||+.|
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~ 104 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNF 104 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcH
Confidence 4557888999999999999999999999999999999999887765 54 8889887799998863 47999999999
Q ss_pred HHHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecCCcEEeccCCCcchHHHhhcc
Q 038259 112 GQLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGG 189 (501)
Q Consensus 112 ~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~ 189 (501)
.+|..++.++|+ ||++..|+++||| |+.-++.+.|| ...|.|.++++++.+|++++... .|+.|+||.|
T Consensus 105 ~~l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~--~e~~f~YR~S 175 (302)
T PRK14650 105 EDLCKFALQNELSGLEFIYGLPGTLG-------GAIWMNARCFGNEISEILDKITFIDEKGKTICKKF--KKEEFKYKIS 175 (302)
T ss_pred HHHHHHHHHcCCchhhhhcCCCcchh-------HHHHhhCCccccchheeEEEEEEEECCCCEEEEEH--HHcCcccccc
Confidence 999999999998 7899999988855 55566677787 56799999999999999987433 5899999998
Q ss_pred ccCCceEEEEEEEEEEEecC
Q 038259 190 GIGASFGVIVAWKVRLVPVP 209 (501)
Q Consensus 190 ~~~g~~Givt~~t~k~~p~~ 209 (501)
.|...-.||++++|++.|..
T Consensus 176 ~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 176 PFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred cCCCCCEEEEEEEEEEcCCC
Confidence 75443369999999998854
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.73 E-value=2.2e-17 Score=164.98 Aligned_cols=163 Identities=17% Similarity=0.091 Sum_probs=136.9
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEc-CCC--CEEEEcCCC
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVD-AVA--KTAWVQAGA 109 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d-~~~--~~v~v~~G~ 109 (501)
.....+.++.|+|++|+++++++|+++++|+.+.|+|+|.+..+ +.+ |++|.+ +|+.++++ .+. ..++++||+
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCC
Confidence 45588899999999999999999999999999999999998777 554 888887 59999873 222 389999999
Q ss_pred cHHHHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecC-CcEEeccCCCcchHHHh
Q 038259 110 TLGQLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDAN-GRFLDRESMGEDLFWAI 186 (501)
Q Consensus 110 ~~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~-G~v~~~~~~~~dl~~a~ 186 (501)
.|.+|.+++.++|+ ||++..|+++||| |+.-++.+.|| ...|.|.++++++.+ |++++... .|+.|+|
T Consensus 93 ~~~~l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~--~e~~f~Y 163 (334)
T PRK00046 93 NWHDLVLWTLQQGMPGLENLALIPGTVG-------AAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA--AECRFGY 163 (334)
T ss_pred cHHHHHHHHHHcCchhhHHhcCCCcchh-------HHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH--HHcCccc
Confidence 99999999999998 7888889888855 45556677777 467999999999987 99887433 5999999
Q ss_pred hccccCCc---eEEEEEEEEEEEec
Q 038259 187 RGGGIGAS---FGVIVAWKVRLVPV 208 (501)
Q Consensus 187 rg~~~~g~---~Givt~~t~k~~p~ 208 (501)
|-|.|... --||++++|++.|-
T Consensus 164 R~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 164 RDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred ccccCCCCCcCCEEEEEEEEEecCC
Confidence 99975543 34999999999985
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=1e-16 Score=159.93 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=136.9
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEc---CCCCEEEEcCCC
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVD---AVAKTAWVQAGA 109 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d---~~~~~v~v~~G~ 109 (501)
.....++++.|+|++|+++++++++++++|+.+.|+|+|.+..+.+.+ ++||.+.+|+.+++. .+...++|++|+
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~ 103 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGL 103 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCC
Confidence 455788899999999999999999999999999999999988777665 899999779998752 232479999999
Q ss_pred cHHHHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCccccccc-ccccEeEEEEE--------------------e
Q 038259 110 TLGQLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFGL-AADNIVDAHLI--------------------D 167 (501)
Q Consensus 110 ~~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~-~~d~v~~~~vV--------------------~ 167 (501)
.|.+|..++.++|+ ||++..|+++||| |+.-++.+.||. ..|.|.+++++ +
T Consensus 104 ~~~~Lv~~~~~~gl~GlE~laGIPGTVG-------GAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~ 176 (354)
T PRK14648 104 PVAALLAFCAHHALRGLETFAGLPGSVG-------GAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQD 176 (354)
T ss_pred cHHHHHHHHHHcCCcchhhhcCCCcchh-------hHhhhcCCccceEhhheEEEEEEEeccCccccccccccccccccc
Confidence 99999999999998 7888888888855 566667778884 67999999999 5
Q ss_pred cCCcE-------------EeccCCCcchHHHhhccccCCc--------eEEEEEEEEEEEecC
Q 038259 168 ANGRF-------------LDRESMGEDLFWAIRGGGIGAS--------FGVIVAWKVRLVPVP 209 (501)
Q Consensus 168 ~~G~v-------------~~~~~~~~dl~~a~rg~~~~g~--------~Givt~~t~k~~p~~ 209 (501)
.+|++ ++. .+.|+.|+||-|.|... --||++++|++.|..
T Consensus 177 ~~g~~~~~~~~~~~~~~~~~~--~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 177 KRGECLGLDGGPFTCSSFQTV--FARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred CCCceecccccccccccceEe--cHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 66776 221 23689999999975542 249999999998853
No 30
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.64 E-value=9.5e-17 Score=113.67 Aligned_cols=47 Identities=45% Similarity=0.825 Sum_probs=34.7
Q ss_pred cccCCCCCCCCCCCCCCcchhhhchhhhhhhcccHHHHHHHHhhcCCCCCCcCCCCCC
Q 038259 432 AYINYRDLDIGTNNQGYTSIKQASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSIP 489 (501)
Q Consensus 432 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~yyg~n~~RL~~IK~kyDP~n~F~~~~sI~ 489 (501)
+|+||+|.+++ ..+|.+.|||+|++||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999998865 127999999999999999999999999999999997
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.63 E-value=3.9e-16 Score=152.43 Aligned_cols=166 Identities=22% Similarity=0.251 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccC---CCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHHHHHH
Q 038259 44 LDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQ---VPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLYYRIA 119 (501)
Q Consensus 44 ~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~---~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~ 119 (501)
+.+.+||+-|+..+..+-+-.+..+.-+|+..+.... ....-|++..|..| ++|.++++|+|+|+|+++++.++|.
T Consensus 61 qrVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~li 140 (543)
T KOG1262|consen 61 QRVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLI 140 (543)
T ss_pred HHHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhc
Confidence 4555666666665556555555556666665444321 11344666665555 9999999999999999999999999
Q ss_pred HhCCCceeccCCCCcccccccccCCCCCCcccccccccccEeEEEEEecCCcEEe--ccCCCcchHHHhhccccCCceEE
Q 038259 120 EKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDANGRFLD--RESMGEDLFWAIRGGGIGASFGV 197 (501)
Q Consensus 120 ~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~--~~~~~~dl~~a~rg~~~~g~~Gi 197 (501)
+.|+.|++.+- ....+|||++.|-|+-..|.+||+..|.+.+.|||++||++++ .+++++|||+|+-.|. |++|.
T Consensus 141 p~g~tLaV~~E-ldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq--GTlgf 217 (543)
T KOG1262|consen 141 PKGYTLAVLPE-LDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ--GTLGF 217 (543)
T ss_pred cCCceeeeecc-cccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEccccc--Cchhe
Confidence 99887776654 3457899999999999999999999999999999999999996 4557899999999999 99999
Q ss_pred EEEEEEEEEecCCee
Q 038259 198 IVAWKVRLVPVPSTV 212 (501)
Q Consensus 198 vt~~t~k~~p~~~~~ 212 (501)
.+.+|+|+.|..+.+
T Consensus 218 LVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 218 LVAATIRIIKVKKYV 232 (543)
T ss_pred eeeeEEEEEeccceE
Confidence 999999999998854
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=2e-14 Score=139.70 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=123.4
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccC-CCCeEEcCCCCEEEEcCCCcHH
Q 038259 34 TPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLN-LSEINVDAVAKTAWVQAGATLG 112 (501)
Q Consensus 34 ~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~-l~~i~~d~~~~~v~v~~G~~~~ 112 (501)
....++++ |++++|+++++ ++|+.+.|+|+|.+..+.+.+ ++||.+.+ ++.++++. +|+||+.|.
T Consensus 18 GG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~ 83 (273)
T PRK14651 18 GGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLP 83 (273)
T ss_pred CceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHH
Confidence 44566777 99999999988 589999999999988777665 89898866 66666532 699999999
Q ss_pred HHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecCCcEEeccCCCcchHHHhhccc
Q 038259 113 QLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGG 190 (501)
Q Consensus 113 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 190 (501)
+|.+++.++|+ |+++..|+++||| |+.-|+.+.|| ...|.|.++++++ +|++++... .|+.|+||.+.
T Consensus 84 ~l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~--~e~~f~YR~S~ 153 (273)
T PRK14651 84 GLVRRAARLGLSGLEGLVGIPAQVG-------GAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP--DELGFGYRHSG 153 (273)
T ss_pred HHHHHHHHCCCcchhhhcCCCcchh-------hHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH--HHccccccccC
Confidence 99999999998 8999999998855 55566677777 4679999999997 899887443 59999999987
Q ss_pred cCCceEEEEEEEEEEEec
Q 038259 191 IGASFGVIVAWKVRLVPV 208 (501)
Q Consensus 191 ~~g~~Givt~~t~k~~p~ 208 (501)
|.. --||++++|++.|.
T Consensus 154 ~~~-~~iIl~a~f~l~~~ 170 (273)
T PRK14651 154 LPP-GHVVTRVRLKLRPS 170 (273)
T ss_pred CCC-CEEEEEEEEEECCC
Confidence 544 25999999999885
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.32 E-value=5.4e-12 Score=121.57 Aligned_cols=145 Identities=15% Similarity=0.140 Sum_probs=115.3
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEEEEcCCCcHH
Q 038259 33 NTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGATLG 112 (501)
Q Consensus 33 ~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 112 (501)
.....++++.|++.+ + ++|+.+.|+|+|.+..+.+.+ +++ -+++|+.++++. .+++++||+.+.
T Consensus 15 iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~ 78 (257)
T PRK13904 15 IGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSG 78 (257)
T ss_pred ECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHH
Confidence 445777888888887 6 899999999999987776543 554 345688888854 479999999999
Q ss_pred HHHHHHHHhCC-CceeccCCCCcccccccccCCCCCCcccccc-cccccEeEEEEEecCCcEEeccCCCcchHHHhhccc
Q 038259 113 QLYYRIAEKSK-NLGFPAGLCPTVGAGGHISGGGYGVMLRKFG-LAADNIVDAHLIDANGRFLDRESMGEDLFWAIRGGG 190 (501)
Q Consensus 113 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 190 (501)
+|.+++.++|+ ||++..|+++||| |+.-++.+.|| ...|.|.++++++ |+ + ...|+.|+||.+.
T Consensus 79 ~l~~~~~~~gl~GlE~l~gIPGtVG-------GAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~ 144 (257)
T PRK13904 79 KIFNYAKKNNLGGFEFLGKLPGTLG-------GLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSG 144 (257)
T ss_pred HHHHHHHHCCCchhhhhcCCCccHH-------HHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcC
Confidence 99999999998 7999999998855 44555666677 4679999999998 42 2 2369999999987
Q ss_pred cCCceEEEEEEEEEEEecCC
Q 038259 191 IGASFGVIVAWKVRLVPVPS 210 (501)
Q Consensus 191 ~~g~~Givt~~t~k~~p~~~ 210 (501)
|. .||++++||+.|..+
T Consensus 145 ~~---~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 145 IN---GVILEARFKKTHGFD 161 (257)
T ss_pred CC---cEEEEEEEEECCCCH
Confidence 33 499999999998543
No 34
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.62 E-value=0.0026 Score=62.35 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=25.8
Q ss_pred hchhhhhhhcccHHHHHHHHhhcCCCCCCcCCCCC
Q 038259 454 ASVWGSKYFKNNFKRLVRVKSMVDPHNFFRNEQSI 488 (501)
Q Consensus 454 ~~~~~~~yyg~n~~RL~~IK~kyDP~n~F~~~~sI 488 (501)
.++| +..||+.|+|+++.|++|||.+++.-.|.|
T Consensus 247 ~~dW-~~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 247 QEDW-RRHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 3479 578999999999999999999999988877
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.46 E-value=0.018 Score=52.80 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=51.5
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHH
Q 038259 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEG-LSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQL 114 (501)
Q Consensus 37 p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l 114 (501)
+..++.|+|.+|+.++++ .+-...+.+||++... ...+......+||++++... .|..+++.+++|+++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 456789999999999998 2336799999998532 11111113589999876443 33334678999999999999
Q ss_pred HHH
Q 038259 115 YYR 117 (501)
Q Consensus 115 ~~~ 117 (501)
.+.
T Consensus 78 ~~~ 80 (171)
T PF00941_consen 78 EES 80 (171)
T ss_dssp HHH
T ss_pred hhc
Confidence 876
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=94.99 E-value=0.08 Score=51.85 Aligned_cols=140 Identities=18% Similarity=0.149 Sum_probs=81.9
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHHHH
Q 038259 39 VIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLYYR 117 (501)
Q Consensus 39 ~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~ 117 (501)
-+..|+|.+|+.++++ +++-...+.+||++..... ......++||++++ .. .+..+++.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 4678999999988876 3433467899999974211 12123688999975 44 34446679999999999999863
Q ss_pred H------HHhCCCceeccCCCCcccccccccCCCCCCccccccccccc-----EeEEEEEecCCcEEeccCCCcchHHHh
Q 038259 118 I------AEKSKNLGFPAGLCPTVGAGGHISGGGYGVMLRKFGLAADN-----IVDAHLIDANGRFLDRESMGEDLFWAI 186 (501)
Q Consensus 118 l------~~~g~~l~~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~-----v~~~~vV~~~G~v~~~~~~~~dl~~a~ 186 (501)
. .+.-..+ -.+..-...+|||.+..+--. .|. .+..+|+..+++.+.. .|+|
T Consensus 79 ~~~~~~L~~a~~~v-as~qIRN~aTiGGNl~~a~p~---------sD~~p~LlAldA~v~l~~~r~vpl----~~f~--- 141 (258)
T PRK09799 79 RFIPAALREALGFV-YSRHLRNQSTIGGEIAARQEE---------SVLLPVLLALDAELVFGNGETLSI----EDYL--- 141 (258)
T ss_pred cccHHHHHHHHHHh-CCHHHhccchhHHHhhcCCcc---------HHHHHHHHHcCCEEEEecCcEEeH----HHhc---
Confidence 2 1110000 011233445688887644221 222 2455666666654421 1332
Q ss_pred hccccCCceEEEEEEEEE
Q 038259 187 RGGGIGASFGVIVAWKVR 204 (501)
Q Consensus 187 rg~~~~g~~Givt~~t~k 204 (501)
.|.. + .|||++.+.
T Consensus 142 ~g~~--~--Eil~~I~iP 155 (258)
T PRK09799 142 ACPC--D--RLLTEIIIP 155 (258)
T ss_pred CCCC--C--cEEEEEEcC
Confidence 3322 2 588888664
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.26 E-value=0.096 Score=52.26 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=84.2
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCCcccCCCEEEEEccCCC---CeEEcCCCCEEEEcCCCcHHHH
Q 038259 39 VIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFE-GLSYVSQVPFVVIDLLNLS---EINVDAVAKTAWVQAGATLGQL 114 (501)
Q Consensus 39 ~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~-g~~~~~~~~~vvIdl~~l~---~i~~d~~~~~v~v~~G~~~~~l 114 (501)
-++.|+|.+|..++++. +. ...+.+||++.. ....+......+||++++. .|+.. ++..+++|+++++.++
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~-~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLA-EDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEec-CCCEEEEEeCCcHHHH
Confidence 57889999999988764 22 357899999963 2112222236889999765 44432 3467999999999999
Q ss_pred HH--HHHHhCCCce------eccCCCCcccccccccCCCCCCcccccccccccE-------eEEEEEecCCcEEeccCCC
Q 038259 115 YY--RIAEKSKNLG------FPAGLCPTVGAGGHISGGGYGVMLRKFGLAADNI-------VDAHLIDANGRFLDRESMG 179 (501)
Q Consensus 115 ~~--~l~~~g~~l~------~~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v-------~~~~vV~~~G~v~~~~~~~ 179 (501)
.+ .+.+.-..|. -.+..-...++||.+..+... .|.+ -.+++..++|+-...-
T Consensus 81 ~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p~---------sD~~~~Llal~A~v~i~~~~g~R~vp~--- 148 (291)
T PRK09971 81 IEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGATS---------ADSAPPLFALDAKLEIHSPNGVRFVPI--- 148 (291)
T ss_pred hcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCcc---------hhHHHHHHHcCCEEEEEcCCCcEEEEH---
Confidence 85 2222100000 012333456788888654322 2322 2345556677422110
Q ss_pred cchHHHhhccccCCceEEEEEEEEEEEe
Q 038259 180 EDLFWAIRGGGIGASFGVIVAWKVRLVP 207 (501)
Q Consensus 180 ~dl~~a~rg~~~~g~~Givt~~t~k~~p 207 (501)
.|+|-+.+-.. -..--+||++.+...+
T Consensus 149 ~df~~g~~~t~-l~~~Eil~~I~iP~~~ 175 (291)
T PRK09971 149 NGFYTGPGKVS-LEHDEILVAFIIPPEP 175 (291)
T ss_pred HHhcCCccccc-cCCCceEEEEEeCCCC
Confidence 24443322111 0122489988776543
No 38
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.66 E-value=0.22 Score=48.67 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=61.7
Q ss_pred EEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHHHH-
Q 038259 40 IITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLYYR- 117 (501)
Q Consensus 40 vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~- 117 (501)
++.|+|.+|..++++ +++-.-.+.+||++..-.-. .....++||++++ .. .|..+++.+++|+++++.++...
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 578999999988765 34323578899999752211 1113588999875 43 34445578999999999998752
Q ss_pred -----HHHhCCCceeccCCCCcccccccccCCC
Q 038259 118 -----IAEKSKNLGFPAGLCPTVGAGGHISGGG 145 (501)
Q Consensus 118 -----l~~~g~~l~~~~g~~~~vgvgG~~~ggg 145 (501)
|.+.- ...-.+-.-...++||.+..+.
T Consensus 79 ~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 79 LTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred chHHHHHHHH-HHhCCHHHhccccHHHHhhcCC
Confidence 22210 0000123334556888886543
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.91 E-value=0.25 Score=52.63 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=87.8
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHH
Q 038259 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEG-LSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQL 114 (501)
Q Consensus 37 p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l 114 (501)
..-++.|+|.+|+.++++. +. ...+.+||++... ..........+||++++..+ .|..++..++|||++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988763 32 3678999999632 11112123688999986543 33345678999999999999
Q ss_pred HHHHHHhCCCc----ee--ccCCCCcccccccccCCCCCCcccccccccccE-----e--EEEEEecCCcEEeccCCCcc
Q 038259 115 YYRIAEKSKNL----GF--PAGLCPTVGAGGHISGGGYGVMLRKFGLAADNI-----V--DAHLIDANGRFLDRESMGED 181 (501)
Q Consensus 115 ~~~l~~~g~~l----~~--~~g~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v-----~--~~~vV~~~G~v~~~~~~~~d 181 (501)
...+.+.=..| .. ....-...+|||.+..+... .|.. + .+++...+|+-...- .|
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP~---------sD~~p~LlALdA~v~l~~~~G~R~vpl---~d 335 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSPI---------GDSPPALIALGARLTLRKGEGRRTLPL---ED 335 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCCc---------hHHHHHHHHcCCEEEEEcCCCcEEEeH---HH
Confidence 87665431000 00 12234456688888654321 2221 2 345556667422110 25
Q ss_pred hHHHhhccccCCceEEEEEEEEE
Q 038259 182 LFWAIRGGGIGASFGVIVAWKVR 204 (501)
Q Consensus 182 l~~a~rg~~~~g~~Givt~~t~k 204 (501)
+|-.++-.. -..--||+++.+.
T Consensus 336 F~~g~~kt~-L~~~EiI~~I~iP 357 (467)
T TIGR02963 336 FFIDYGKTD-RQPGEFVEALHVP 357 (467)
T ss_pred hhccccccc-CCCCceEEEEEec
Confidence 554443321 0222589988776
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=91.53 E-value=0.36 Score=48.69 Aligned_cols=75 Identities=27% Similarity=0.365 Sum_probs=51.1
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHH
Q 038259 38 LVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEG-LSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLY 115 (501)
Q Consensus 38 ~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 115 (501)
--++.|+|.+|..++++. ++ .-.+.+||++... .-.+......+||++++..+ .|..+++.+++|++|++.++.
T Consensus 5 f~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred ceEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 357889999999888763 32 3468999998531 11111123688999975443 233345789999999999986
Q ss_pred H
Q 038259 116 Y 116 (501)
Q Consensus 116 ~ 116 (501)
+
T Consensus 81 ~ 81 (321)
T TIGR03195 81 E 81 (321)
T ss_pred h
Confidence 5
No 41
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=90.71 E-value=0.41 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=20.2
Q ss_pred ccHHHHHHHHhhcCCCCCCcCC
Q 038259 464 NNFKRLVRVKSMVDPHNFFRNE 485 (501)
Q Consensus 464 ~n~~RL~~IK~kyDP~n~F~~~ 485 (501)
.++.+..+||+++||+++|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 6889999999999999999865
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=89.80 E-value=0.44 Score=46.81 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCCcc-cCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHHH
Q 038259 43 PLDVSQVQAAIKCSKKHGLQIRLRSGGHDFE-GLSYV-SQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLYY 116 (501)
Q Consensus 43 p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~-g~~~~-~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~ 116 (501)
|+|.+|+.++++. +. ..++.+||+++. ..-.. ......+||++++... .|..+++.+++|+++++.++.+
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 7888888888774 22 367899999863 21111 1113688999986554 4555668999999999999964
No 43
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=88.90 E-value=0.4 Score=45.87 Aligned_cols=76 Identities=8% Similarity=0.113 Sum_probs=42.4
Q ss_pred eEEEEEEeeeCCcchhhHHHHHHHHHHhhccccccCCCCccccCCCCCCCCCCCCCCcchhhhchhhhhhhcc-cHHHHH
Q 038259 392 LYKIFYGVAWGEDRTSRRHIDWIRRLYGYMTPYVSKNPREAYINYRDLDIGTNNQGYTSIKQASVWGSKYFKN-NFKRLV 470 (501)
Q Consensus 392 ~~~i~~~~~w~~~~~~~~~~~wi~~~~~~l~~~~~~~~~g~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~yyg~-n~~RL~ 470 (501)
..++.+...-.++.+.+...++.+++++.+..+ +|+-.-+-.... ....|-...+|+ .+.-++
T Consensus 168 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----gG~is~eHG~G~-----------~k~~~~~~~~~~~~~~~~~ 231 (248)
T PF02913_consen 168 NLHLYILFDPRDPEEPERAEALWDELYELVLEL-----GGSISAEHGIGK-----------LKKPYLEEEYGPAALRLMR 231 (248)
T ss_dssp EEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHT-----T-BBSSSSGGGH-----------HHHHHHCHHCHHHHHHHHH
T ss_pred eEEEEeecccchHHHHHHHHHHHHHHHHHHHhc-----ccccccccchhh-----------hhHHHHHHhcchHHHHHHH
Confidence 455544443334555666777777777666654 122211111110 122344455664 799999
Q ss_pred HHHhhcCCCCCCc
Q 038259 471 RVKSMVDPHNFFR 483 (501)
Q Consensus 471 ~IK~kyDP~n~F~ 483 (501)
+||+.+||+|++.
T Consensus 232 ~iK~~~DP~~ilN 244 (248)
T PF02913_consen 232 AIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHH-TTS-BS
T ss_pred HhhhccCCccCCC
Confidence 9999999999986
No 44
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=88.11 E-value=0.95 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=16.6
Q ss_pred ccHHHHHHHHhhcCCCCCCcC
Q 038259 464 NNFKRLVRVKSMVDPHNFFRN 484 (501)
Q Consensus 464 ~n~~RL~~IK~kyDP~n~F~~ 484 (501)
.++.+..++|+++||+|+|.+
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--
T ss_pred cCHHHHHHHHHHhCCCCCCCC
Confidence 899999999999999999976
No 45
>PLN02906 xanthine dehydrogenase
Probab=85.80 E-value=1.2 Score=53.70 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=55.9
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHH
Q 038259 38 LVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEG-LSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLY 115 (501)
Q Consensus 38 ~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 115 (501)
.-++.|+|.+|+.++++. +. .-++.+||++... .........++||++++..+ .|..++..++|||++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 458899999999987763 22 3578899999732 11222223688999986544 344456789999999999999
Q ss_pred HHHHHh
Q 038259 116 YRIAEK 121 (501)
Q Consensus 116 ~~l~~~ 121 (501)
..|.+.
T Consensus 305 ~~l~~~ 310 (1319)
T PLN02906 305 NLFRKV 310 (1319)
T ss_pred HHHHHH
Confidence 865443
No 46
>PLN00192 aldehyde oxidase
Probab=83.75 E-value=2.5 Score=51.03 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=57.1
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHH
Q 038259 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLY 115 (501)
Q Consensus 37 p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 115 (501)
..-++.|.|.+|+.++++.....+-..++..||+++.-.-. .....++||++++..+ .|..++..++|||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 44689999999999887632100123678899999642211 2223688999975544 344456789999999999998
Q ss_pred HHHHHh
Q 038259 116 YRIAEK 121 (501)
Q Consensus 116 ~~l~~~ 121 (501)
..+.+.
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 765553
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=82.40 E-value=2.9 Score=50.43 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=55.6
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccCCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHHHH
Q 038259 38 LVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEG-LSYVSQVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQLY 115 (501)
Q Consensus 38 ~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 115 (501)
.-++.|.|.+|+.++++. +. .-++..||+++.- ..........+||++++..+ .+..++..++|||++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 458899999999988764 32 3578899999742 11211112578999886554 344456789999999999998
Q ss_pred HHHHH
Q 038259 116 YRIAE 120 (501)
Q Consensus 116 ~~l~~ 120 (501)
..|.+
T Consensus 313 ~~l~~ 317 (1330)
T TIGR02969 313 DILAD 317 (1330)
T ss_pred HHHHH
Confidence 86543
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=77.10 E-value=7.7 Score=38.41 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=53.4
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccCCCEEEEEccCCC-Ce-EEcCCCCEEEEcCCCcHHH
Q 038259 37 PLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEG-LSYVSQVPFVVIDLLNLS-EI-NVDAVAKTAWVQAGATLGQ 113 (501)
Q Consensus 37 p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g-~~~~~~~~~vvIdl~~l~-~i-~~d~~~~~v~v~~G~~~~~ 113 (501)
+..+.+|.|.+|..++++ +++ --.+.+|||++.. .-.....+.-+||++++. .. .+..+++.+++||-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 556889999988877776 444 5789999999763 222122246789998874 22 3334567799999999999
Q ss_pred HHH
Q 038259 114 LYY 116 (501)
Q Consensus 114 l~~ 116 (501)
+.+
T Consensus 79 i~~ 81 (284)
T COG1319 79 IAR 81 (284)
T ss_pred HHh
Confidence 863
No 49
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=70.94 E-value=8 Score=41.17 Aligned_cols=68 Identities=25% Similarity=0.424 Sum_probs=50.9
Q ss_pred CCCCCceecCCCCChhhHhhhccccccCCCCCCCCccEEEecCCHHHHHHHHHHHHHC-CCcEEE-----EcCCCC-CCC
Q 038259 2 SSISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKH-GLQIRL-----RSGGHD-FEG 74 (501)
Q Consensus 2 ~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~-~~~~~v-----~ggGh~-~~g 74 (501)
-+|.|.|+.-+-|+-+.+.. ++-.. .....|-..+.|.+.++|..+|+.|+++ ..||.+ |+|||. |..
T Consensus 122 ~~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweD 196 (717)
T COG4981 122 APIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWED 196 (717)
T ss_pred CCcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhh
Confidence 37899999999999998864 22221 1245889999999999999999999998 457655 344554 544
No 50
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=70.60 E-value=9.4 Score=38.87 Aligned_cols=142 Identities=20% Similarity=0.118 Sum_probs=82.0
Q ss_pred CccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCccc-CCCEEEEEccCCCCe-EEcCCCCEEEEcCCCcHHH
Q 038259 36 KPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVS-QVPFVVIDLLNLSEI-NVDAVAKTAWVQAGATLGQ 113 (501)
Q Consensus 36 ~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~-~~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~ 113 (501)
--+.++.|.+.+|+.+++. .+-..++..|++++.-..... .+-..+|-+..+..+ +|+...+.+++|+|++..+
T Consensus 202 ~~~r~~~P~~l~D~a~l~a----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~ 277 (493)
T COG4630 202 GDDRFIVPATLADFADLLA----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQ 277 (493)
T ss_pred CCceeEeeccHHHHHHHHh----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHH
Confidence 3445788999999998875 344578888888854222111 111234444444443 4445668999999999999
Q ss_pred HHHHHHHhCCCce---eccCC---CCcccccccccCCCCCCccccccccc--ccEeEEEEEecCCcEEe-ccCCCcchHH
Q 038259 114 LYYRIAEKSKNLG---FPAGL---CPTVGAGGHISGGGYGVMLRKFGLAA--DNIVDAHLIDANGRFLD-RESMGEDLFW 184 (501)
Q Consensus 114 l~~~l~~~g~~l~---~~~g~---~~~vgvgG~~~ggg~g~~~~~~G~~~--d~v~~~~vV~~~G~v~~-~~~~~~dl~~ 184 (501)
.++.|.+.=-.|. --.|. -..-++||.+..|.-- |-+. =..++.++++-.|+-.+ .. -.|+|-
T Consensus 278 a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPI------GDtPPaLIALgA~ltLr~g~~~RtlP--Le~~Fi 349 (493)
T COG4630 278 AYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPI------GDTPPALIALGATLTLRSGDGRRTLP--LEDYFI 349 (493)
T ss_pred HHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcC------CCCCchhhhcCcEEEEEecCCccccc--HHHHHH
Confidence 9999987621110 00122 1233467777554421 2221 12367777776665443 11 137788
Q ss_pred Hhhcc
Q 038259 185 AIRGG 189 (501)
Q Consensus 185 a~rg~ 189 (501)
+|+--
T Consensus 350 ~Y~kq 354 (493)
T COG4630 350 AYGKQ 354 (493)
T ss_pred Hhhhh
Confidence 87643
No 51
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=58.05 E-value=5.5 Score=41.50 Aligned_cols=21 Identities=24% Similarity=0.719 Sum_probs=19.5
Q ss_pred ccHHHHHHHHhhcCCCCCCcC
Q 038259 464 NNFKRLVRVKSMVDPHNFFRN 484 (501)
Q Consensus 464 ~n~~RL~~IK~kyDP~n~F~~ 484 (501)
.|+.+..+||+++||++||..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 799999999999999999954
No 52
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=50.05 E-value=10 Score=38.81 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=18.3
Q ss_pred ccc-HHHHHHHHhhcCCCCCCcC
Q 038259 463 KNN-FKRLVRVKSMVDPHNFFRN 484 (501)
Q Consensus 463 g~n-~~RL~~IK~kyDP~n~F~~ 484 (501)
..+ .+-.++||++|||+++|.-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 344 6888999999999999963
No 53
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=40.45 E-value=31 Score=31.83 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCCCC
Q 038259 49 VQAAIKCSKKHGLQIRLRSGGHDFE 73 (501)
Q Consensus 49 v~~~v~~a~~~~~~~~v~ggGh~~~ 73 (501)
..+.++|++++++|+.|.++|.++-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 3457889999999999999999864
No 54
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.60 E-value=37 Score=31.07 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=31.3
Q ss_pred ccCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEE
Q 038259 27 FRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRL 65 (501)
Q Consensus 27 ~r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v 65 (501)
+||-. -..|..+|...+++++.++.+.|++.+++..+
T Consensus 117 ~~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 117 RRWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 45754 45899999999999999999999999987544
No 55
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=36.42 E-value=2.4e+02 Score=30.94 Aligned_cols=131 Identities=14% Similarity=0.208 Sum_probs=77.0
Q ss_pred cCC-HHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEcc--CCCC---eEEcCCC---CEEEEcCCC----
Q 038259 43 PLD-VSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLL--NLSE---INVDAVA---KTAWVQAGA---- 109 (501)
Q Consensus 43 p~s-~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~--~l~~---i~~d~~~---~~v~v~~G~---- 109 (501)
|.+ .++|.+.++.+.+++-++....+-.++...-.+.+ |+||-| .|=+ --.++++ .+.-|=|--
T Consensus 308 p~~~~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD---VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~ 384 (741)
T TIGR00178 308 PAAQQEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD---VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAG 384 (741)
T ss_pred ChhhHHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC---eEEecCcHHHHhccCCccCCCCCcccceeecCCccchH
Confidence 444 46799999999999999999998887777666654 888854 1211 1122222 233332322
Q ss_pred cHHHHHHHHHHhCCCceecc---CCCCcccccccccCCCCCCcccccccccc-----cEeEEEEEecCCcEEe-ccCCCc
Q 038259 110 TLGQLYYRIAEKSKNLGFPA---GLCPTVGAGGHISGGGYGVMLRKFGLAAD-----NIVDAHLIDANGRFLD-RESMGE 180 (501)
Q Consensus 110 ~~~~l~~~l~~~g~~l~~~~---g~~~~vgvgG~~~ggg~g~~~~~~G~~~d-----~v~~~~vV~~~G~v~~-~~~~~~ 180 (501)
...++.+.|.++|. +.+ |+.+.||+ ++- -+--||..-- .==.++||+.+|+++- -+.+.-
T Consensus 385 vYq~~I~~ck~nGa---fDp~TmGsV~NVGL---MAq-----KAEEYGSHdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~G 453 (741)
T TIGR00178 385 VYQVVIEDCKQNGA---FDPTTMGTVPNVGL---MAQ-----KAEEYGSHDKTFQIPADGVVRVVDSSGEVLLEQSVEAG 453 (741)
T ss_pred HHHHHHHHHHhcCC---CCcccccCCcchhH---hHH-----HHHHhcCCCcceecCCCceEEEEeCCCCEEEEeeccCC
Confidence 24566677888873 333 55555443 222 2233443211 1123788999999884 333446
Q ss_pred chHHHhh
Q 038259 181 DLFWAIR 187 (501)
Q Consensus 181 dl~~a~r 187 (501)
|+|.++.
T Consensus 454 DIwRmcq 460 (741)
T TIGR00178 454 DIWRMCQ 460 (741)
T ss_pred cchhhhh
Confidence 8888775
No 56
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=35.52 E-value=2.3e+02 Score=29.73 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=32.0
Q ss_pred CccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCC
Q 038259 36 KPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGG 69 (501)
Q Consensus 36 ~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggG 69 (501)
....|+.|+-+|-..++.+.++++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5678999999999999999999999999999988
No 57
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.16 E-value=47 Score=33.38 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=35.5
Q ss_pred eecCCCCChhhHhhhccccccCCCCCCCCccEEEecCC------HHHHHHHHHHHHHCC------CcEEEEcCCC
Q 038259 8 TYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLD------VSQVQAAIKCSKKHG------LQIRLRSGGH 70 (501)
Q Consensus 8 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s------~~~v~~~v~~a~~~~------~~~~v~ggGh 70 (501)
|--|....|.+.++. .+.||. ....+++|.. +++|.++++.+.+.+ +=|.+||||+
T Consensus 20 ITs~~gAa~~D~~~~--~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 20 ITSPTGAAIQDFLRT--LKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EeCCchHHHHHHHHH--HHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 334444456666542 244653 4556666654 688999999998654 5577888885
No 58
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=34.61 E-value=99 Score=30.29 Aligned_cols=92 Identities=15% Similarity=-0.008 Sum_probs=58.6
Q ss_pred CCCceecCCCCChhhHhhhccccccCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCE
Q 038259 4 ISKVTYTKINSSYSSVLNFTIQNFRFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPF 83 (501)
Q Consensus 4 ~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~ 83 (501)
+...|++|+-|+.+.+.. . ...++++|++++-+...+.|.+-++.=|||... ... -
T Consensus 131 P~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~---D 186 (263)
T COG0351 131 PLATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV---D 186 (263)
T ss_pred ccCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce---e
Confidence 456788888888776532 1 258899999999999999999988888899754 111 2
Q ss_pred EEEEccC---CCCeEEcCCCCEEEEcCCCcHHHHHHHHHHhC
Q 038259 84 VVIDLLN---LSEINVDAVAKTAWVQAGATLGQLYYRIAEKS 122 (501)
Q Consensus 84 vvIdl~~---l~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g 122 (501)
++.|-.. |..-.++.. =+=|.|+++......-...|
T Consensus 187 ~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 187 VLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EEEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 3333221 111122222 23588999877665444444
No 59
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=33.63 E-value=63 Score=28.74 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=25.9
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCcEEEEc
Q 038259 39 VIITPLDVSQVQAAIKCSKKHGLQIRLRS 67 (501)
Q Consensus 39 ~vv~p~s~~~v~~~v~~a~~~~~~~~v~g 67 (501)
.|+.|.+.+|+..++++|-+..-|+.+|=
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 57999999999999999999888888873
No 60
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=31.91 E-value=86 Score=31.09 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=36.1
Q ss_pred ecCCCCChhhHhhhccccccCCCCCCCCcc-EEEecCCHHHHHHHHHHHHHCCCcEEEEc
Q 038259 9 YTKINSSYSSVLNFTIQNFRFSTPNTPKPL-VIITPLDVSQVQAAIKCSKKHGLQIRLRS 67 (501)
Q Consensus 9 ~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~p~s~~~v~~~v~~a~~~~~~~~v~g 67 (501)
=.|.+-+|.++.+. .|. -++..-++++|.+++..+.+.++|+.+.|
T Consensus 243 P~p~~vd~~~wlk~-------------ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~G 289 (324)
T COG2144 243 PYPADVDFRQWLKR-------------YPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIG 289 (324)
T ss_pred CCcccccHHHHHHh-------------CCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEE
Confidence 35777888887653 344 56777777899999999999999999987
No 61
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=31.67 E-value=90 Score=26.53 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=27.9
Q ss_pred CccEEEecCCHHHHHHHHHHHHHCCCcEEE
Q 038259 36 KPLVIITPLDVSQVQAAIKCSKKHGLQIRL 65 (501)
Q Consensus 36 ~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v 65 (501)
.+..|+...|++|+.++-+.|++.|++..+
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l 84 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSIKHKL 84 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 799999999999999999999999988665
No 62
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=31.22 E-value=1.1e+02 Score=27.78 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=31.9
Q ss_pred EEEecCCHH-HHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEE
Q 038259 39 VIITPLDVS-QVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTA 103 (501)
Q Consensus 39 ~vv~p~s~~-~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v 103 (501)
.++.|.+.+ |+++.++.+.+.++|++..+ -..-...+.... --+-||++--+.+-.++++..+
T Consensus 86 llfs~~~~~~e~~~~a~~L~~~gi~~v~Vs-~~~~~~~~l~~~-~~~~Idl~~~~~LvP~EdG~Ri 149 (172)
T PF10740_consen 86 LLFSPFSTDEEAVALAKQLIEQGIPFVGVS-PNKPDEEDLEDL-ADVHIDLKLPKPLVPTEDGDRI 149 (172)
T ss_dssp EEEES-S--HHHHHHHHHHHHHT--EEEEE--SS---TTGGG--SSS-EE----S-SEE-TTS-EE
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCEEEEE-ecCCCCCchhhh-hhheeecccCCCcccCCCCCEe
Confidence 466777777 99999999999999999998 111111122221 1256898887888777776555
No 63
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=30.27 E-value=3.4e+02 Score=29.92 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=47.3
Q ss_pred CCCccE-EEecCCHHHHHHHHHHHHHCC-CcEEEEcC-CCCCCCCCcccCCCEEEEEccCCCCeEEcCCCCEEEEcCCCc
Q 038259 34 TPKPLV-IITPLDVSQVQAAIKCSKKHG-LQIRLRSG-GHDFEGLSYVSQVPFVVIDLLNLSEINVDAVAKTAWVQAGAT 110 (501)
Q Consensus 34 ~~~p~~-vv~p~s~~~v~~~v~~a~~~~-~~~~v~gg-Gh~~~g~~~~~~~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~ 110 (501)
++.|.. |..|++++|+++.+.+|..++ -|+.+|=- |+......... .-.++..+ ..-+-+....+.+.=|..
T Consensus 438 ~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~---~~~~~~Gk--~~i~~~G~~vail~~G~~ 512 (627)
T COG1154 438 RCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPE---LEPLEIGK--GELLKEGEKVAILAFGTM 512 (627)
T ss_pred hcCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccc---cccccccc--eEEEecCCcEEEEecchh
Confidence 456665 568999999999999999998 69988742 33221111100 11233332 112234556777888887
Q ss_pred HHHHHHH
Q 038259 111 LGQLYYR 117 (501)
Q Consensus 111 ~~~l~~~ 117 (501)
+......
T Consensus 513 ~~~al~v 519 (627)
T COG1154 513 LPEALKV 519 (627)
T ss_pred hHHHHHH
Confidence 7655543
No 64
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=28.97 E-value=82 Score=28.61 Aligned_cols=31 Identities=10% Similarity=0.322 Sum_probs=25.8
Q ss_pred cEEEecCCHHHHHHHHHHHHH--CCCcEEEEcC
Q 038259 38 LVIITPLDVSQVQAAIKCSKK--HGLQIRLRSG 68 (501)
Q Consensus 38 ~~vv~p~s~~~v~~~v~~a~~--~~~~~~v~gg 68 (501)
..|+.|.+.+|+..++++|-+ .+-|+.+|-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 458999999999999999999 5678888754
No 65
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=25.82 E-value=41 Score=36.58 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcCCCCCCcCC
Q 038259 466 FKRLVRVKSMVDPHNFFRNE 485 (501)
Q Consensus 466 ~~RL~~IK~kyDP~n~F~~~ 485 (501)
+.+..+|++++||+++|.++
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78889999999999999764
No 66
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=25.53 E-value=1.6e+02 Score=24.85 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHCCCcE-EEEcCCCC
Q 038259 34 TPKPLVIITPLDVSQVQAAIKCSKKHGLQI-RLRSGGHD 71 (501)
Q Consensus 34 ~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~-~v~ggGh~ 71 (501)
...+..++.+.|++|+.++.+.|++.|++. .++-.|+.
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 458999999999999999999999999874 55556654
No 67
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=25.20 E-value=70 Score=33.81 Aligned_cols=32 Identities=38% Similarity=0.466 Sum_probs=18.4
Q ss_pred cEEEecCCH------HHHHHHHHHHHHC--CCcEEEEcCC
Q 038259 38 LVIITPLDV------SQVQAAIKCSKKH--GLQIRLRSGG 69 (501)
Q Consensus 38 ~~vv~p~s~------~~v~~~v~~a~~~--~~~~~v~ggG 69 (501)
..+++|..+ .+|.++|+.+.+. ++=|.+||||
T Consensus 164 ~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 164 EVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred eEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 455555544 6666666666653 4455666666
No 68
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=24.85 E-value=43 Score=36.66 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=21.8
Q ss_pred hhhhhhhcccHHHHHHHHhhcCCCCCCcCC
Q 038259 456 VWGSKYFKNNFKRLVRVKSMVDPHNFFRNE 485 (501)
Q Consensus 456 ~~~~~yyg~n~~RL~~IK~kyDP~n~F~~~ 485 (501)
.+.+. |+ +.+..++++++||+++|.++
T Consensus 538 ~L~~~-YP--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKR-FP--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhh-CC--HHHHHHHHHHhCCCCccCCH
Confidence 44444 45 99999999999999999764
No 69
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=24.43 E-value=1.5e+02 Score=24.86 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHCCCcE-EEEcCCCC
Q 038259 34 TPKPLVIITPLDVSQVQAAIKCSKKHGLQI-RLRSGGHD 71 (501)
Q Consensus 34 ~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~-~v~ggGh~ 71 (501)
...+..++...|++++.++.+.|++.|+|. .|+-.|+.
T Consensus 48 ~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~T 86 (116)
T PF01981_consen 48 NGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRT 86 (116)
T ss_dssp TTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 358899999999999999999999999986 56667776
No 70
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=22.74 E-value=1.4e+02 Score=25.26 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=33.3
Q ss_pred cCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcE-EEEcCCCC
Q 038259 28 RFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQI-RLRSGGHD 71 (501)
Q Consensus 28 r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~-~v~ggGh~ 71 (501)
+|.. ...+..++.+.+++|+.++.+.|.+.|++. .++=.|+.
T Consensus 43 ~W~~--~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~T 85 (115)
T cd02407 43 AWEL--EGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGRT 85 (115)
T ss_pred HHHh--CCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 4643 458999999999999999999999999874 55555553
No 71
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=22.50 E-value=1e+02 Score=23.51 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=23.0
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccCCCEEEEEccCCCC
Q 038259 39 VIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHDFEGLSYVSQVPFVVIDLLNLSE 93 (501)
Q Consensus 39 ~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~~~vvIdl~~l~~ 93 (501)
.++.|++-+|+++++...++.+ .+++|++.|+.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g~----------------------~Vivnl~~l~~ 34 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREGK----------------------IVIVNLENLDD 34 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT------------------------EEEE-TTS-H
T ss_pred EEEeeCCHHHHHHHHHHHHcCC----------------------EEEEECCCCCH
Confidence 4789999999999998877633 57788887764
No 72
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.39 E-value=1.1e+02 Score=25.15 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=28.8
Q ss_pred CccE-EEecCCHHHHHHHHHHHHHCCCcEEEEcCC
Q 038259 36 KPLV-IITPLDVSQVQAAIKCSKKHGLQIRLRSGG 69 (501)
Q Consensus 36 ~p~~-vv~p~s~~~v~~~v~~a~~~~~~~~v~ggG 69 (501)
.|.. +|.+.+-.|++.++..|.+.|+||.+.+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 4554 577788899999999999999999998754
No 73
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=21.93 E-value=1.3e+02 Score=27.11 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=25.1
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCcEEEE
Q 038259 38 LVIITPLDVSQVQAAIKCSKKHGLQIRLR 66 (501)
Q Consensus 38 ~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ 66 (501)
..|+.|.+.+|...+++++.+++-|+.++
T Consensus 136 ~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 136 LKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 45889999999999999999988787664
No 74
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.88 E-value=1.4e+02 Score=24.91 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=27.0
Q ss_pred EEecCCHHHHHHHHHHHHHCCCcEEEEcCCCC
Q 038259 40 IITPLDVSQVQAAIKCSKKHGLQIRLRSGGHD 71 (501)
Q Consensus 40 vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~ 71 (501)
+=.+....|+.++++.|+++|.|+....+.++
T Consensus 54 iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 54 ISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34566789999999999999999988887665
No 75
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.42 E-value=1.2e+02 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=29.0
Q ss_pred CccEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCC
Q 038259 36 KPLVIITPLDVSQVQAAIKCSKKHGLQIRLRSGGHD 71 (501)
Q Consensus 36 ~p~~vv~p~s~~~v~~~v~~a~~~~~~~~v~ggGh~ 71 (501)
.+++++.-.+++.+.+.+++|.++++|+.+--.|.+
T Consensus 67 ~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 67 EADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp H-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred cCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 488999999999999999999999999998777764
No 76
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=21.14 E-value=2.1e+02 Score=24.19 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHCCCcE-EEEcCCCC
Q 038259 34 TPKPLVIITPLDVSQVQAAIKCSKKHGLQI-RLRSGGHD 71 (501)
Q Consensus 34 ~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~-~v~ggGh~ 71 (501)
...+..++...|++|+.++.+.|++.|++. .++=.|+.
T Consensus 47 ~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~T 85 (115)
T TIGR00283 47 EGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGHT 85 (115)
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 457899999999999999999999999985 45555553
No 77
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=20.40 E-value=1.6e+02 Score=24.97 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=32.4
Q ss_pred cCCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCcE-EEEcCCC
Q 038259 28 RFSTPNTPKPLVIITPLDVSQVQAAIKCSKKHGLQI-RLRSGGH 70 (501)
Q Consensus 28 r~~~~~~~~p~~vv~p~s~~~v~~~v~~a~~~~~~~-~v~ggGh 70 (501)
+|.. ...+..++...+++++.++.+.|.+.+++. .++=.|+
T Consensus 43 ~W~~--~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG~ 84 (115)
T cd02430 43 AWER--EGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAGR 84 (115)
T ss_pred HHHh--cCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4643 337889999999999999999999999985 4444554
Done!