BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038262
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
           And O-glucosyltransferase Involved In Xenobiotic
           Metabolism In Plants
 pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
           And O-Glucosyltransferase Involved In Xenobiotic
           Metabolism In Plants
 pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
           And O-Glucosyltransferase Involved In Xenobiotic
           Metabolism In Plants
          Length = 480

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 22/101 (21%)

Query: 199 LQEYTRQLMQLYSLGARKVIV-----------------ASVGPIGCIPYQLARFSGNNST 241
           L E+ ++L+ L+ L    VI                  +S+  +   P  L   S  +ST
Sbjct: 23  LVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVDLTDLS--SST 80

Query: 242 RCNENINKAIVLFNSGLRKLVDQF-NGGQLPGSKFILVDSY 281
           R    I+  +   N  LRK+ D F  GG+LP +  ++VD +
Sbjct: 81  RIESRISLTVTRSNPELRKVFDSFVEGGRLPTA--LVVDLF 119


>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
           Ananatis
          Length = 501

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 17  ARASSQIQPQGLQVPCFFIFGDSLVDNGN---NNRILTLARANYRPYGVDFPQGATGRFT 73
           ++ +S I+ + L+    F    SL+  GN    + I TL  A  R +GV FP+G TG   
Sbjct: 168 SKVASYIEDEHLRQAFSF---HSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALV 224

Query: 74  NG 75
            G
Sbjct: 225 QG 226


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,808,626
Number of Sequences: 62578
Number of extensions: 470338
Number of successful extensions: 745
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 3
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)