BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038264
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 182/363 (50%), Gaps = 47/363 (12%)
Query: 46 MVKPQDYACEEHQVMTKDGYIISVQRIPVGR-SGGAPGDRP---------PDGSSWVLLP 95
M+ Y EE++V+T+DGYI+ V RIP G+ + G G RP ++W+
Sbjct: 11 MITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATNWISNL 70
Query: 96 PDQALAFVLADNEFDVWLANTRGTTYSLGHSSLSPQDKVYWNWSWDELVSDELPAMFQYV 155
P+ +LAF+LAD +DVWL N+RG T++ + SP +W +S+DE+ +LPA ++
Sbjct: 71 PNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFI 130
Query: 156 YNETGQK-LHYVGHSQGSLIALGALSNQQPL-NMWKSAALLAPVSYLNQISS--NLVRLA 211
+TGQK LHYVGHSQG+ I A S L K+ LAPV+ + S N +R
Sbjct: 131 VKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIKTFYALAPVATVKYTKSLINKLRFV 190
Query: 212 ADNMIANVSYWLDLAKFDPLGAPAITLIAEICVKQGID--CRDLMSAFSGKDCSLKSSGA 269
++ + F P L E+C ++ ++ C + + G D ++
Sbjct: 191 PQSLFKFI---FGDKIFYPHNFFDQFLATEVCSREMLNLLCSNALFIICGFDSKNFNTSR 247
Query: 270 M----------------------IKEGTLAMYDYKDENENKKHYGQPTPPVYNMTSIPKD 307
+ +K G YD+ +N+ HY Q PP YN+T++ +
Sbjct: 248 LDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAYDWGSPVQNRMHYDQSQPPYYNVTAM--N 305
Query: 308 FPLFLCHGGADSLSDVKDVKLLINSLKNHVRDRLELHFIDKYAHVDFILGVNAKKVVYDP 367
P+ + +GG D L+D +DV LL+ L N + + E+ F Y H+DFI ++A + VY+
Sbjct: 306 VPIAVWNGGKDLLADPQDVGLLLPKLPNLIYHK-EIPF---YNHLDFIWAMDAPQEVYND 361
Query: 368 LIA 370
+++
Sbjct: 362 IVS 364
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 177/371 (47%), Gaps = 63/371 (16%)
Query: 46 MVKPQDYACEEHQVMTKDGYIISVQRIPVGRSGGAPGDRPP----------DGSSWVLLP 95
M+ Y EE++V+T+DGYI+ + RIP GR R P ++W+
Sbjct: 19 MITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNL 78
Query: 96 PDQALAFVLADNEFDVWLANTRGTTYSLGHSSLSPQDKVYWNWSWDELVSDELPAMFQYV 155
P+ +LAF+LAD +DVWL N+RG T++ + SP +W +S+DE+ +LPA ++
Sbjct: 79 PNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFI 138
Query: 156 YNETGQ-KLHYVGHSQGSLIALGALSNQQPL-NMWKSAALLAPVSY----------LNQI 203
+TGQ KLHYVGHSQG+ I A S L K+ LAPV+ L +
Sbjct: 139 LKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLV 198
Query: 204 SSNLVRLAADNMIANVSYWLDLAKFDPLGAPAITLIAEICVKQGID--CRDLMSAFSGKD 261
S L +L N I ++ D +F L E+C ++ +D C + + G D
Sbjct: 199 PSFLFKLIFGNKIFYPHHFFD--QF---------LATEVCSRETVDLLCSNALFIICGFD 247
Query: 262 C------------SLKSSGA----------MIKEGTLAMYDYKDENENKKHYGQPTPPVY 299
S +G +K G +D+ +N HY Q PP Y
Sbjct: 248 TMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYY 307
Query: 300 NMTSIPKDFPLFLCHGGADSLSDVKDVKLLINSLKNHVRDRLELHFIDKYAHVDFILGVN 359
N+T + P+ + +GG D L+D DV LL++ L N + R I Y H+DFI ++
Sbjct: 308 NLTDM--HVPIAVWNGGNDLLADPHDVDLLLSKLPNLIYHRK----IPPYNHLDFIWAMD 361
Query: 360 AKKVVYDPLIA 370
A + VY+ +++
Sbjct: 362 APQAVYNEIVS 372
>pdb|4FHG|A Chain A, Spore Photoproduct Lyase C140s Mutant
Length = 368
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 317 ADSLSDVKDVKLLINSLKNHVR-----DRLELHFIDKYAHVDFIL 356
A S SD+ + L +SLK + D L F+ KY HVD +L
Sbjct: 165 AASTSDIVGIDHLTHSLKKAIEFIGATDYGRLRFVTKYEHVDHLL 209
>pdb|3R4Y|A Chain A, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) From Saccharophagus Degradans 2-40
pdb|3R4Y|B Chain B, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) From Saccharophagus Degradans 2-40
pdb|3R4Z|A Chain A, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) In Complex With Alpha-D-Galactopyranose
From Saccharophagus Degradans 2- 40
pdb|3R4Z|B Chain B, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) In Complex With Alpha-D-Galactopyranose
From Saccharophagus Degradans 2- 40
Length = 374
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 101 AFVLADNEFDVWLANTRGTTYSLGHSSLSPQDKVYWNWSWDE 142
A + D+E+ VW T+G ++G S +P+DKV+ WD+
Sbjct: 55 AVLKVDDEYHVWY--TKGEGETVGFGSDNPEDKVF---PWDK 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,129,254
Number of Sequences: 62578
Number of extensions: 541297
Number of successful extensions: 1210
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 13
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)