BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038265
(883 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 86/235 (36%), Gaps = 54/235 (22%)
Query: 570 SAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRY 629
+ + LP L L L+ N ++ LP SI L L+ L++ C EL ELP+ +
Sbjct: 114 AGLXELPDTXQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPL-- 170
Query: 630 LVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCP 689
+ S G+ L SLR + + L I L L+SL I + P
Sbjct: 171 ---------ASTDASGEHQGLVNLQSLRL----EWTGIRSLPASIANLQNLKSLKIRNSP 217
Query: 690 RLISLPPAMKYLSSLETLILLKCESLDXXXXXXXXXXGSHHDCNNVRSHLRTLCVAEXXX 749
L +L PA+ +L LE L L C +L
Sbjct: 218 -LSALGPAIHHLPKLEELDLRGCTAL---------------------------------- 242
Query: 750 XXXXXXXXXXGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLP 804
G L+ L + DC N + LP + L LE L + C LS LP
Sbjct: 243 ---RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICE---------LQSLQTL 612
L L L + + LP + +L +LR L + ++ +LP + L +LQ+L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 613 NLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFE 672
L + + LP I L +L+ + S L I L L L + C L
Sbjct: 189 RL-EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 673 DIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESL 715
+ L+ L++ C L++LP + L+ LE L L C +L
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 765 LQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPAL 824
LQ TI D LP + + LE L + P L +LP + L L+ L+I CP L
Sbjct: 106 LQHXTI-DAAGLXELPDTXQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPEL 163
Query: 825 CERCKPLTGED 835
E +PL D
Sbjct: 164 TELPEPLASTD 174
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 545 ERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSIC 604
E T + + I+ ++L+ L + NS + L + +L +L LDL G ++ P
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 605 ELQSLQTLNLGDCLELEELPKDIRYLVSL 633
L+ L L DC L LP DI L L
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 778 ALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPAL 824
+LP S+ +L+ L++L I + P LS+L +HHL L+ L + C AL
Sbjct: 197 SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL 242
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 40/244 (16%)
Query: 256 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGT-TGYNLQ 313
R LL++DDVW+ +W +L +IL+TTR V +MG +L
Sbjct: 237 RSLLILDDVWD----SW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 287
Query: 314 ELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL--YGSTDEH 371
+ + LSLF+ K +L + I+++C+G PL V +G+LL + + E+
Sbjct: 288 KEKGLEILSLFVNM-------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEY 340
Query: 372 DWEHVRDNDIWKLRQAP----DDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHL 427
+ +++ ++R++ + + A+ +S + L +K + SI KD K + L
Sbjct: 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400
Query: 428 VQFWMAQGLLQSPNENEELEKIGMRYFKE---LCSR---SFFQDLGDL-LPGLEVFNC-Q 479
W E EE+E I + + C R SF L DL + L NC Q
Sbjct: 401 CILW--------DMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQ 452
Query: 480 IHDL 483
+ DL
Sbjct: 453 LQDL 456
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 40/244 (16%)
Query: 256 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGT-TGYNLQ 313
R LL++DDVW+ +W +L +IL+TTR V +MG +L
Sbjct: 243 RSLLILDDVWD----SW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 293
Query: 314 ELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL--YGSTDEH 371
+ + LSLF+ K +L + I+++C+G PL V +G+LL + + E+
Sbjct: 294 KEKGLEILSLFVNM-------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEY 346
Query: 372 DWEHVRDNDIWKLRQAP----DDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHL 427
+ +++ ++R++ + + A+ +S + L +K + SI KD K + L
Sbjct: 347 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 406
Query: 428 VQFWMAQGLLQSPNENEELEKIGMRYFKE---LCSR---SFFQDLGDL-LPGLEVFNC-Q 479
W E EE+E I + + C R SF L DL + L NC Q
Sbjct: 407 CILW--------DMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQ 458
Query: 480 IHDL 483
+ DL
Sbjct: 459 LQDL 462
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 8 IEKLLEKLGSFAYEELLLFCGVKNDLEKLKETLTTVKSVVLDAEE--KQVHSHQLRDWLE 65
I L+ KLG EE L GVK ++E L + L + + ++ E ++ Q + W +
Sbjct: 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWAD 62
Query: 66 KLKDACYDAEDALDEFEVE 84
++++ Y ED +D+F V+
Sbjct: 63 EVRELSYVIEDVVDKFLVQ 81
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 38/228 (16%)
Query: 256 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGT-TGYNLQ 313
R LL++DDVW DP W +L +IL+TTR V +MG L
Sbjct: 237 RSLLILDDVW--DP--W-----VLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLG 287
Query: 314 ELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDW 373
+ LSLF+ K +L I+++C+G PL V +G+LL + +
Sbjct: 288 REKGLEILSLFVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAY 340
Query: 374 --EHVRDNDIWKLRQAP----DDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHL 427
+++ ++R++ + + A+ +S + L +K + SI KD K + L
Sbjct: 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400
Query: 428 VQFWMAQGLLQSPNENEELEKIGMRYFKE---LCSR---SFFQDLGDL 469
W E EE+E I + + C+R SF L DL
Sbjct: 401 CVLWDL--------ETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDL 440
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 38/228 (16%)
Query: 256 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGT-TGYNLQ 313
R LL++DDVW DP W +L +IL+TT V +MG L
Sbjct: 244 RSLLILDDVW--DP--W-----VLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLG 294
Query: 314 ELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDW 373
+ LSLF+ K +L I+++C+G PL V +G+LL + +
Sbjct: 295 REKGLEILSLFVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAY 347
Query: 374 --EHVRDNDIWKLRQAP----DDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHL 427
+++ ++R++ + + A+ +S + L +K + SI KD K + L
Sbjct: 348 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 407
Query: 428 VQFWMAQGLLQSPNENEELEKIGMRYFKE---LCSR---SFFQDLGDL 469
W E EE+E I + + C+R SF L DL
Sbjct: 408 CVLWDL--------ETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDL 447
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 523 NDFASFLPD-LGRVRTIMLPIDDERTSQSFVTS-----CISKSKSLRVLVLMNSAIEV-L 575
N+F+ LP+ L + +L +D +S +F C + +L+ L L N+ +
Sbjct: 350 NEFSGELPESLTNLSASLLTLD--LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 576 PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635
P + N +L L LS N +P+S+ L L+ L L + E+P+++ Y+ +L
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 636 FVVTTKQ-KSLLESGIGCLSSLRFLMISD---CGNLEYLFEDIDQLSVLR 681
++ + SG+ ++L ++ +S+ G + ++ L++L+
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 523 NDFASFLPD-LGRVRTIMLPIDDERTSQSFVTS-----CISKSKSLRVLVLMNSAIEV-L 575
N+F+ LP+ L + +L +D +S +F C + +L+ L L N+ +
Sbjct: 353 NEFSGELPESLTNLSASLLTLD--LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 576 PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635
P + N +L L LS N +P+S+ L L+ L L + E+P+++ Y+ +L
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 636 FVVTTKQ-KSLLESGIGCLSSLRFLMISD---CGNLEYLFEDIDQLSVLR 681
++ + SG+ ++L ++ +S+ G + ++ L++L+
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
>pdb|2AN1|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|C Chain C, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|D Chain D, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
Length = 292
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 194 IPIVGIGGLGKTA-LAKLVYNDQKDFGKRQIMTKIINSVIGGNHGN------LDPDRMQK 246
+P + +G+ A LA +V D G + + + +VIG N GN LDPD +
Sbjct: 52 VPTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQ 111
Query: 247 VLRDSLNG-----KRYLL 259
L D L G KR+LL
Sbjct: 112 QLSDVLEGRYISEKRFLL 129
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
Length = 591
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 34 EKLKETLTTVKSVVLDAEEKQVHSHQLRDWLEKLKDACYDAEDALDEFEVEDLRRQVIKQ 93
E+L + +KS DA K + + + +E K A E+ L + EV+ R+ KQ
Sbjct: 482 EQLADARRDLKSAKADA--KVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQ 539
Query: 94 RSIGRKLRNFFGSSNPIAFCFRMGHQLKKI-----RERF 127
++G NF +A+C + G ++KI RE+F
Sbjct: 540 IALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQREKF 578
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
Length = 592
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 34 EKLKETLTTVKSVVLDAEEKQVHSHQLRDWLEKLKDACYDAEDALDEFEVEDLRRQVIKQ 93
E+L + +KS DA K + + + +E K A E+ L + EV+ R+ KQ
Sbjct: 483 EQLADARRDLKSAKADA--KVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQ 540
Query: 94 RSIGRKLRNFFGSSNPIAFCFRMGHQLKKI-----RERF 127
++G NF +A+C + G ++KI RE+F
Sbjct: 541 IALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQREKF 579
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 34 EKLKETLTTVKSVVLDAEEKQVHSHQLRDWLEKLKDACYDAEDALDEFEVEDLRRQVIKQ 93
E+L + +KS DA K + + + +E K A E+ L + EV+ R+ KQ
Sbjct: 454 EQLADARRDLKSAKADA--KVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQ 511
Query: 94 RSIGRKLRNFFGSSNPIAFCFRMGHQLKKI-----RERF 127
++G NF +A+C + G ++KI RE+F
Sbjct: 512 IALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQREKF 550
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 34 EKLKETLTTVKSVVLDAEEKQVHSHQLRDWLEKLKDACYDAEDALDEFEVEDLRRQVIKQ 93
E+L + +KS DA K + + + +E K A E+ L + EV+ R+ KQ
Sbjct: 455 EQLADARRDLKSAKADA--KVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQ 512
Query: 94 RSIGRKLRNFFGSSNPIAFCFRMGHQLKKI-----RERF 127
++G NF +A+C + G ++KI RE+F
Sbjct: 513 IALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQREKF 551
>pdb|4HV4|A Chain A, 2.25 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From
Yersinia Pestis Co92 In Complex With Amp
pdb|4HV4|B Chain B, 2.25 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From
Yersinia Pestis Co92 In Complex With Amp
Length = 494
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 118 HQLKKIRERFDEIANMMGKFNLTLRLDDHRRVVHEEREP------THSFVRTSDIIGRYE 171
H+ + R+ +D+ AN++ + ++ L LD V+ EP + + RT G+ +
Sbjct: 385 HRYTRTRDLYDDFANVLSQVDVLLMLD-----VYAAGEPPIPGADSRALCRTIRNRGKLD 439
Query: 172 -----DGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTA 206
D E E+L Q +GE +I + G G +GK A
Sbjct: 440 PILVPDSESAPEMLAQILNGE----DLILVQGAGNIGKIA 475
>pdb|4HAO|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
pdb|4HAO|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
Length = 304
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 204 KTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGN------LDPDRMQKVLRDSLNG--- 254
K LA +V D G +++ + VIG N GN LDPD + L D L G
Sbjct: 64 KADLAVVVGGDGNMLGAARVLARYDIKVIGVNRGNLGFLTDLDPDNALQQLSDVLEGEYL 123
Query: 255 --KRYLL 259
+R+LL
Sbjct: 124 SEQRFLL 130
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 78/390 (20%), Positives = 147/390 (37%), Gaps = 81/390 (20%)
Query: 470 LPGLEVFNCQIHDLMHDL--------ALLVAKGECLMVNSAGQSIPKSVRHLSFVSANAL 521
L L++ CQI+ + D L++ + + S PK+++HL F+
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 522 RNDFASFLPDLGRVRTIMLPIDDERTSQSFV--TSCISK--------SKSLRVLVLMNSA 571
DF +P+ +++T +S ++ IS ++ L+VL N+A
Sbjct: 119 SIDF--------------IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164
Query: 572 IEVLPRK-MGNLRQLRHLDLSGN-RKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRY 629
I L ++ M +L+Q +L L+ N I + + Q+LN G L + K ++
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224
Query: 630 LVSLRMFVVTTKQ-----------KSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLS 678
+++ T + + L E + ++ + + N + F + +L
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 679 VLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDXXXXXXXXXXGSHHDCNNVRSH 738
+ + L LP + LS+L+ L+L +
Sbjct: 285 L-------TATHLSELPSGLVGLSTLKKLVL-------------------------SANK 312
Query: 739 LRTLCVAEXXXXXXXXXXXXXGSSKTLQMLT--IGDCPNFMALPRSLKDLEALE--NLLI 794
LC G++K L++ T + + N L S D+E + NL +
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 795 TSCPKLSSLPEGMHHLTTLKTLAIEECPAL 824
+ L SL + +LKT A +ECP L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 508 KSVRHLSFVSANALR-NDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLV 566
+ + HL F +N + ++F+ FL I L I T +F + SL VL
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFL---SLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLK 451
Query: 567 LMNSAIE--VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELP 624
+ ++ + LP LR L LDLS + + P + L SLQ LN+ +L+ +P
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVP 510
Query: 625 KDI 627
I
Sbjct: 511 DGI 513
>pdb|1QI9|A Chain A, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
pdb|1QI9|B Chain B, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
Length = 556
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 103 FFGSSNPIAFCFRMGHQLKKIRERFDEIANMMGKFNLTLRLDDHRRVVHEEREPTHSF-V 161
F G N +A G Q+ I RFD I ++ +T+R H+ ++ E T F +
Sbjct: 465 FEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTL-HQELMTFAEESTFEFRL 523
Query: 162 RTSDIIGRYEDGEKIIE 178
T ++I ++DG I+
Sbjct: 524 FTGEVIKLFQDGTFTID 540
>pdb|2QMC|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
Length = 188
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 278 LLLGGAEGSKILVTTR---SNKVALIMGTMRGTTG--YNLQELPYKDCLSLF-MKCAFKE 331
L++G GS+I+ T SN + M + +++Q LP + + F M K+
Sbjct: 87 LVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWLPDELRIEKFGMPADVKD 146
Query: 332 GKEKHPNLVKIGEKIMEK-----CRGIPLAVRTVGSLLYGSTD 369
NL K+G +I+ K I + +T GS+ YGSTD
Sbjct: 147 ------NLTKMGYQIVTKPVMGDVNAIQVLPKTKGSVFYGSTD 183
>pdb|2NQO|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2QM6|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|3FNM|B Chain B, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|D Chain D, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 188
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 278 LLLGGAEGSKILVTTR---SNKVALIMGTMRGTTG--YNLQELPYKDCLSLF-MKCAFKE 331
L++G GS+I+ T SN + M + +++Q LP + + F M K+
Sbjct: 87 LVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWLPDELRIEKFGMPADVKD 146
Query: 332 GKEKHPNLVKIGEKIMEK-----CRGIPLAVRTVGSLLYGSTD 369
NL K+G +I+ K I + +T GS+ YGSTD
Sbjct: 147 ------NLTKMGYQIVTKPVMGDVNAIQVLPKTKGSVFYGSTD 183
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 763 KTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSS--LPEGMHHLTTLKTLAIEE 820
KT+ L C N + +E LE + C KLSS LP L T++ A +
Sbjct: 275 KTVPYLLCSGCSNLTKVVXDNSAIETLEPRVFXDCVKLSSVTLPTA---LKTIQVYAFKN 331
Query: 821 CPALCERCKP 830
C AL P
Sbjct: 332 CKALSTISYP 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,270,080
Number of Sequences: 62578
Number of extensions: 977351
Number of successful extensions: 2787
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2720
Number of HSP's gapped (non-prelim): 103
length of query: 883
length of database: 14,973,337
effective HSP length: 107
effective length of query: 776
effective length of database: 8,277,491
effective search space: 6423333016
effective search space used: 6423333016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)