Query 038265
Match_columns 883
No_of_seqs 587 out of 4958
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:14:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-76 4.9E-81 688.0 45.5 733 11-781 8-788 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.1E-63 8.9E-68 611.4 48.2 650 117-827 133-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-38 2.5E-43 338.7 11.8 264 169-440 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.5E-24 3.2E-29 269.8 14.8 295 555-856 159-468 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.3E-24 4.9E-29 268.1 15.4 338 509-858 141-493 (968)
6 KOG0444 Cytoskeletal regulator 99.9 9.4E-25 2E-29 229.6 -5.0 314 509-851 56-373 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.1E-21 2.4E-26 205.7 3.9 285 554-856 143-432 (873)
8 PLN03210 Resistant to P. syrin 99.8 1.1E-19 2.4E-24 225.9 20.0 286 552-850 550-903 (1153)
9 KOG4194 Membrane glycoprotein 99.8 3.1E-21 6.7E-26 202.4 2.6 282 559-858 124-410 (873)
10 KOG0444 Cytoskeletal regulator 99.8 7.6E-22 1.7E-26 207.9 -4.8 278 556-857 74-356 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 4.3E-20 9.4E-25 185.7 -7.1 246 556-823 64-309 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 6.2E-19 1.4E-23 177.5 -4.5 274 527-823 222-540 (565)
13 KOG0618 Serine/threonine phosp 99.6 8.4E-17 1.8E-21 178.8 -0.7 208 633-852 243-488 (1081)
14 PRK15370 E3 ubiquitin-protein 99.6 1.2E-14 2.6E-19 168.8 12.2 225 560-823 199-427 (754)
15 KOG0617 Ras suppressor protein 99.5 9.4E-17 2E-21 143.1 -5.3 165 530-701 30-195 (264)
16 PRK15370 E3 ubiquitin-protein 99.5 1.3E-14 2.8E-19 168.5 10.2 252 560-854 178-429 (754)
17 PRK15387 E3 ubiquitin-protein 99.5 5.3E-14 1.2E-18 162.2 14.3 217 559-823 241-457 (788)
18 PRK15387 E3 ubiquitin-protein 99.5 7.2E-14 1.6E-18 161.1 14.9 242 560-858 222-463 (788)
19 KOG0618 Serine/threonine phosp 99.5 6.9E-16 1.5E-20 171.6 -2.4 108 555-664 40-147 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.5 1.6E-15 3.4E-20 164.1 -3.2 160 554-713 17-204 (319)
21 KOG0617 Ras suppressor protein 99.4 1.7E-15 3.7E-20 135.2 -5.4 152 558-713 31-184 (264)
22 cd00116 LRR_RI Leucine-rich re 99.4 1.3E-14 2.9E-19 156.8 -0.1 189 525-713 15-232 (319)
23 KOG4237 Extracellular matrix p 99.3 7.2E-14 1.6E-18 141.3 -3.5 126 563-689 70-199 (498)
24 PRK04841 transcriptional regul 99.3 3.4E-10 7.4E-15 140.6 24.1 286 163-492 13-332 (903)
25 KOG4237 Extracellular matrix p 99.2 2.8E-13 6E-18 137.1 -5.5 242 545-799 76-358 (498)
26 TIGR03015 pepcterm_ATPase puta 99.1 5.6E-09 1.2E-13 109.6 21.7 172 191-364 43-242 (269)
27 PRK00411 cdc6 cell division co 99.1 2.1E-08 4.5E-13 111.6 24.7 289 161-466 27-358 (394)
28 TIGR00635 ruvB Holliday juncti 99.0 3.8E-09 8.3E-14 112.9 16.3 263 164-466 4-289 (305)
29 PRK00080 ruvB Holliday junctio 99.0 4.9E-09 1.1E-13 112.7 16.4 266 163-466 24-310 (328)
30 KOG4658 Apoptotic ATPase [Sign 99.0 1.2E-10 2.6E-15 137.8 3.4 102 561-663 546-651 (889)
31 PF01637 Arch_ATPase: Archaeal 99.0 4.1E-09 8.9E-14 108.2 13.1 186 166-359 1-233 (234)
32 KOG0532 Leucine-rich repeat (L 99.0 2.7E-11 5.8E-16 128.5 -3.9 144 565-713 55-200 (722)
33 TIGR02928 orc1/cdc6 family rep 99.0 2.4E-07 5.3E-12 101.9 26.6 288 163-466 14-350 (365)
34 KOG0532 Leucine-rich repeat (L 98.9 3.6E-11 7.9E-16 127.5 -5.1 129 555-688 116-244 (722)
35 KOG3207 Beta-tubulin folding c 98.9 2.6E-10 5.7E-15 117.6 -1.2 213 557-801 118-340 (505)
36 KOG3207 Beta-tubulin folding c 98.9 7.1E-10 1.5E-14 114.5 1.9 182 530-713 118-312 (505)
37 PF05729 NACHT: NACHT domain 98.8 1.8E-08 3.8E-13 97.3 10.7 131 192-328 1-163 (166)
38 COG2909 MalT ATP-dependent tra 98.7 7E-07 1.5E-11 100.8 20.5 288 163-493 18-339 (894)
39 COG3899 Predicted ATPase [Gene 98.7 3.2E-07 6.8E-12 109.7 18.2 250 165-423 1-327 (849)
40 KOG4341 F-box protein containi 98.7 4.2E-10 9.2E-15 115.5 -5.8 263 555-826 159-441 (483)
41 PRK13342 recombination factor 98.7 1.1E-07 2.5E-12 105.3 12.5 181 164-363 12-199 (413)
42 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.3E-13 97.0 3.4 102 559-664 18-123 (175)
43 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3E-13 113.1 4.8 185 556-783 112-297 (394)
44 COG4886 Leucine-rich repeat (L 98.7 1.9E-08 4.1E-13 112.1 5.3 121 565-688 98-219 (394)
45 COG2256 MGS1 ATPase related to 98.7 9.4E-08 2E-12 98.7 9.5 170 163-357 29-209 (436)
46 KOG1909 Ran GTPase-activating 98.6 1.8E-09 3.8E-14 108.7 -3.0 91 553-644 23-133 (382)
47 KOG1259 Nischarin, modulator o 98.6 4.6E-09 1E-13 102.9 -0.5 128 582-714 283-411 (490)
48 PRK04195 replication factor C 98.6 2.1E-06 4.6E-11 97.2 19.5 241 163-439 13-271 (482)
49 KOG1259 Nischarin, modulator o 98.6 1.5E-08 3.2E-13 99.4 1.3 132 626-800 279-412 (490)
50 PF14580 LRR_9: Leucine-rich r 98.6 2.3E-08 4.9E-13 94.9 2.4 138 568-711 5-149 (175)
51 KOG1909 Ran GTPase-activating 98.6 1.4E-08 3.1E-13 102.3 0.9 239 529-799 26-310 (382)
52 PTZ00112 origin recognition co 98.6 4E-06 8.6E-11 95.6 19.9 201 163-364 754-986 (1164)
53 KOG4341 F-box protein containi 98.5 5.1E-09 1.1E-13 107.7 -3.0 260 560-828 138-418 (483)
54 PRK14961 DNA polymerase III su 98.5 3E-06 6.5E-11 92.2 18.1 187 163-359 15-219 (363)
55 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-09 2.8E-14 106.8 -7.1 159 651-822 207-374 (419)
56 PTZ00202 tuzin; Provisional 98.5 1.5E-05 3.3E-10 84.3 22.2 165 158-328 256-434 (550)
57 PRK12402 replication factor C 98.5 3.7E-06 8.1E-11 91.5 16.5 185 164-359 15-225 (337)
58 PRK14960 DNA polymerase III su 98.5 4.5E-06 9.8E-11 93.7 17.0 187 163-358 14-217 (702)
59 PRK06893 DNA replication initi 98.5 5.8E-07 1.3E-11 91.0 9.3 154 191-364 39-207 (229)
60 TIGR03420 DnaA_homol_Hda DnaA 98.5 2.9E-06 6.3E-11 86.4 14.5 165 169-364 22-205 (226)
61 PLN03150 hypothetical protein; 98.4 3E-07 6.6E-12 107.2 7.6 90 585-674 420-510 (623)
62 PRK07003 DNA polymerase III su 98.4 3.9E-06 8.5E-11 95.2 15.2 189 163-360 15-221 (830)
63 PRK08691 DNA polymerase III su 98.4 7.2E-06 1.6E-10 93.1 17.2 187 163-359 15-219 (709)
64 PLN03150 hypothetical protein; 98.4 3.6E-07 7.7E-12 106.6 7.2 107 561-667 419-528 (623)
65 KOG2120 SCF ubiquitin ligase, 98.4 5.2E-09 1.1E-13 102.6 -7.0 135 560-715 185-326 (419)
66 TIGR01242 26Sp45 26S proteasom 98.4 1.5E-06 3.2E-11 95.0 11.2 184 162-354 120-328 (364)
67 PLN03025 replication factor C 98.4 7.5E-06 1.6E-10 87.7 16.3 175 164-357 13-197 (319)
68 PRK12323 DNA polymerase III su 98.4 9.6E-06 2.1E-10 90.9 17.2 187 163-359 15-224 (700)
69 PRK14956 DNA polymerase III su 98.4 5E-06 1.1E-10 90.9 14.6 184 163-356 17-218 (484)
70 PRK13341 recombination factor 98.4 4.1E-06 8.9E-11 97.7 14.8 172 164-357 28-214 (725)
71 PF05496 RuvB_N: Holliday junc 98.4 3.7E-06 8.1E-11 81.4 11.6 181 163-362 23-223 (233)
72 PRK06645 DNA polymerase III su 98.4 1.2E-05 2.5E-10 89.9 17.3 185 163-357 20-226 (507)
73 PRK14949 DNA polymerase III su 98.4 1.4E-05 3.1E-10 92.6 18.2 188 163-360 15-220 (944)
74 PRK09112 DNA polymerase III su 98.4 1.3E-05 2.8E-10 85.9 16.8 186 162-360 21-240 (351)
75 PRK09087 hypothetical protein; 98.4 1.2E-05 2.6E-10 80.8 15.7 145 191-364 44-199 (226)
76 PF13173 AAA_14: AAA domain 98.3 2.7E-06 5.8E-11 77.6 9.5 113 192-319 3-126 (128)
77 COG3903 Predicted ATPase [Gene 98.3 1.4E-06 3E-11 91.0 8.4 280 189-491 12-313 (414)
78 PRK00440 rfc replication facto 98.3 1.8E-05 4E-10 85.3 17.4 178 164-358 17-201 (319)
79 PRK14963 DNA polymerase III su 98.3 6.6E-06 1.4E-10 92.4 14.1 184 164-358 14-215 (504)
80 PRK07471 DNA polymerase III su 98.3 2.1E-05 4.5E-10 84.8 17.0 184 163-360 18-238 (365)
81 PRK14957 DNA polymerase III su 98.3 1.1E-05 2.3E-10 90.8 15.1 188 163-360 15-221 (546)
82 PRK05896 DNA polymerase III su 98.3 1.3E-05 2.8E-10 90.2 14.9 189 163-361 15-222 (605)
83 PRK05564 DNA polymerase III su 98.3 9.8E-06 2.1E-10 86.6 13.4 175 164-359 4-189 (313)
84 PRK14962 DNA polymerase III su 98.3 1.3E-05 2.7E-10 89.4 14.6 189 163-362 13-221 (472)
85 PRK14964 DNA polymerase III su 98.3 3.5E-05 7.6E-10 85.4 17.8 185 163-357 12-214 (491)
86 PRK15386 type III secretion pr 98.2 5.5E-06 1.2E-10 88.3 10.7 32 763-797 156-187 (426)
87 PRK07994 DNA polymerase III su 98.2 1.1E-05 2.4E-10 92.1 13.9 188 163-360 15-220 (647)
88 cd00009 AAA The AAA+ (ATPases 98.2 6.9E-06 1.5E-10 77.2 10.6 118 167-296 1-131 (151)
89 KOG2028 ATPase related to the 98.2 6.4E-06 1.4E-10 83.6 10.3 128 189-328 160-294 (554)
90 PRK14955 DNA polymerase III su 98.2 3.2E-05 6.9E-10 85.3 16.8 186 163-359 15-227 (397)
91 TIGR02397 dnaX_nterm DNA polym 98.2 3.2E-05 6.9E-10 84.8 16.9 190 163-362 13-220 (355)
92 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.2E-11 67.4 4.5 59 560-618 1-60 (61)
93 KOG0531 Protein phosphatase 1, 98.2 3.8E-07 8.3E-12 101.7 1.2 126 559-689 71-197 (414)
94 PRK14951 DNA polymerase III su 98.2 4.4E-05 9.5E-10 87.2 17.6 187 163-359 15-224 (618)
95 PF13191 AAA_16: AAA ATPase do 98.2 1.8E-06 3.9E-11 84.9 5.7 48 165-215 1-48 (185)
96 PRK03992 proteasome-activating 98.2 5.8E-06 1.3E-10 90.6 10.1 183 163-354 130-337 (389)
97 PRK08903 DnaA regulatory inact 98.2 3.1E-05 6.7E-10 78.8 14.4 155 191-364 42-203 (227)
98 PF13401 AAA_22: AAA domain; P 98.2 4.7E-06 1E-10 76.6 7.7 103 190-294 3-125 (131)
99 PRK14958 DNA polymerase III su 98.2 3.4E-05 7.4E-10 87.0 15.8 186 163-358 15-218 (509)
100 TIGR02903 spore_lon_C ATP-depe 98.2 2.2E-05 4.8E-10 90.8 14.5 188 164-363 154-398 (615)
101 PRK15386 type III secretion pr 98.1 8.5E-06 1.8E-10 86.9 9.5 137 556-712 48-187 (426)
102 PRK07940 DNA polymerase III su 98.1 7.4E-05 1.6E-09 81.2 16.7 187 164-360 5-213 (394)
103 PRK14950 DNA polymerase III su 98.1 5.2E-05 1.1E-09 87.8 16.1 189 163-362 15-223 (585)
104 PRK14969 DNA polymerase III su 98.1 8.9E-05 1.9E-09 84.2 17.7 183 163-355 15-215 (527)
105 KOG0989 Replication factor C, 98.1 2.8E-05 6.1E-10 77.7 11.3 175 163-353 35-223 (346)
106 PRK08451 DNA polymerase III su 98.1 0.00011 2.3E-09 82.4 17.3 188 163-360 13-218 (535)
107 PF13855 LRR_8: Leucine rich r 98.1 4.1E-06 8.9E-11 64.9 4.2 59 583-642 1-60 (61)
108 PRK08727 hypothetical protein; 98.1 7E-05 1.5E-09 76.0 14.4 145 192-357 42-201 (233)
109 PRK14954 DNA polymerase III su 98.1 0.00013 2.8E-09 83.7 18.0 183 163-355 15-223 (620)
110 PRK09111 DNA polymerase III su 98.1 0.00013 2.9E-09 83.5 17.7 188 163-360 23-233 (598)
111 TIGR00678 holB DNA polymerase 98.0 0.00012 2.6E-09 71.9 14.9 154 191-355 14-186 (188)
112 PRK14959 DNA polymerase III su 98.0 6.9E-05 1.5E-09 84.9 14.5 190 164-364 16-225 (624)
113 PRK08084 DNA replication initi 98.0 5.7E-05 1.2E-09 76.8 12.7 149 191-364 45-213 (235)
114 PRK07764 DNA polymerase III su 98.0 0.00016 3.6E-09 85.6 17.2 184 164-358 15-219 (824)
115 KOG0531 Protein phosphatase 1, 98.0 1.8E-06 3.8E-11 96.4 0.6 128 556-689 91-219 (414)
116 PRK06620 hypothetical protein; 98.0 0.00011 2.5E-09 73.1 13.3 138 192-360 45-189 (214)
117 PF00308 Bac_DnaA: Bacterial d 98.0 0.00011 2.4E-09 73.6 13.3 159 190-364 33-212 (219)
118 COG1474 CDC6 Cdc6-related prot 97.9 0.00056 1.2E-08 73.7 18.9 194 164-360 17-238 (366)
119 PRK06305 DNA polymerase III su 97.9 0.00027 5.9E-09 78.8 16.9 182 163-355 16-217 (451)
120 PRK07133 DNA polymerase III su 97.9 0.00027 5.8E-09 81.5 17.0 186 164-360 18-220 (725)
121 PRK14948 DNA polymerase III su 97.9 0.00032 6.9E-09 81.0 17.8 187 164-360 16-222 (620)
122 PRK14952 DNA polymerase III su 97.9 0.00028 6.1E-09 80.3 17.0 189 163-362 12-222 (584)
123 PRK14970 DNA polymerase III su 97.9 0.00014 3E-09 79.9 14.2 185 163-357 16-206 (367)
124 PRK14953 DNA polymerase III su 97.9 0.00035 7.6E-09 78.4 17.5 187 164-361 16-221 (486)
125 PRK14087 dnaA chromosomal repl 97.9 0.00023 5E-09 79.3 15.9 162 191-364 141-323 (450)
126 PF05621 TniB: Bacterial TniB 97.9 0.00059 1.3E-08 69.7 17.2 185 171-358 44-259 (302)
127 COG2255 RuvB Holliday junction 97.9 0.00029 6.3E-09 69.9 14.4 176 163-356 25-219 (332)
128 PRK06647 DNA polymerase III su 97.9 0.00025 5.4E-09 80.9 16.1 186 164-359 16-219 (563)
129 PRK05642 DNA replication initi 97.9 0.00035 7.7E-09 70.9 15.3 149 191-364 45-212 (234)
130 TIGR02639 ClpA ATP-dependent C 97.9 5.5E-05 1.2E-09 90.2 10.9 156 164-328 182-358 (731)
131 PHA02544 44 clamp loader, smal 97.9 0.00013 2.9E-09 78.4 12.4 145 163-326 20-171 (316)
132 TIGR03345 VI_ClpV1 type VI sec 97.8 4.6E-05 9.9E-10 91.5 9.4 157 164-328 187-363 (852)
133 PRK14971 DNA polymerase III su 97.8 0.00042 9.1E-09 80.1 16.7 185 163-357 16-219 (614)
134 PTZ00454 26S protease regulato 97.8 9.4E-05 2E-09 80.7 10.6 183 163-354 144-351 (398)
135 PRK05563 DNA polymerase III su 97.8 0.00065 1.4E-08 77.9 17.8 185 163-358 15-218 (559)
136 PTZ00361 26 proteosome regulat 97.8 4.5E-05 9.8E-10 83.6 7.7 182 164-354 183-389 (438)
137 PRK14965 DNA polymerase III su 97.8 0.00031 6.8E-09 80.9 14.7 187 163-360 15-221 (576)
138 CHL00181 cbbX CbbX; Provisiona 97.8 0.00089 1.9E-08 70.0 16.2 158 165-331 24-212 (287)
139 TIGR02881 spore_V_K stage V sp 97.7 0.00021 4.6E-09 74.1 11.5 157 165-330 7-193 (261)
140 PRK05707 DNA polymerase III su 97.7 0.00067 1.5E-08 72.2 14.9 163 189-360 20-203 (328)
141 CHL00095 clpC Clp protease ATP 97.7 0.00013 2.8E-09 88.2 10.0 156 164-327 179-353 (821)
142 PF05673 DUF815: Protein of un 97.7 0.0008 1.7E-08 66.5 13.6 125 161-297 24-153 (249)
143 PRK11034 clpA ATP-dependent Cl 97.7 0.00012 2.6E-09 86.2 8.9 157 164-328 186-362 (758)
144 KOG2982 Uncharacterized conser 97.7 2.1E-05 4.5E-10 77.9 2.1 94 760-856 196-293 (418)
145 COG1222 RPT1 ATP-dependent 26S 97.6 0.00078 1.7E-08 69.2 13.1 181 164-354 151-357 (406)
146 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00017 3.7E-09 87.4 10.0 155 164-328 173-349 (852)
147 TIGR02880 cbbX_cfxQ probable R 97.6 0.0005 1.1E-08 71.9 12.1 130 192-330 59-210 (284)
148 CHL00176 ftsH cell division pr 97.6 0.00066 1.4E-08 78.5 13.5 177 163-352 182-386 (638)
149 PF12799 LRR_4: Leucine Rich r 97.6 6.9E-05 1.5E-09 53.0 3.4 40 560-600 1-40 (44)
150 PF00004 AAA: ATPase family as 97.5 0.00011 2.4E-09 67.5 5.3 92 194-294 1-111 (132)
151 TIGR00362 DnaA chromosomal rep 97.5 0.00096 2.1E-08 74.2 13.3 156 191-359 136-309 (405)
152 TIGR01241 FtsH_fam ATP-depende 97.5 0.0014 2.9E-08 74.9 14.8 180 162-354 53-260 (495)
153 KOG1859 Leucine-rich repeat pr 97.5 2.8E-06 6.1E-11 93.6 -6.8 124 562-690 166-291 (1096)
154 COG3267 ExeA Type II secretory 97.5 0.0039 8.4E-08 61.5 15.3 172 189-362 49-247 (269)
155 KOG3665 ZYG-1-like serine/thre 97.5 8.1E-05 1.8E-09 86.7 4.6 132 509-644 123-263 (699)
156 PRK14088 dnaA chromosomal repl 97.5 0.0012 2.5E-08 73.7 13.6 157 191-359 130-304 (440)
157 KOG1947 Leucine rich repeat pr 97.5 1.2E-05 2.5E-10 92.6 -2.7 110 558-667 186-308 (482)
158 PRK10865 protein disaggregatio 97.5 0.00023 5E-09 85.9 8.0 157 164-328 178-354 (857)
159 KOG2227 Pre-initiation complex 97.4 0.0015 3.2E-08 69.6 12.5 202 161-364 147-376 (529)
160 PRK12422 chromosomal replicati 97.4 0.0035 7.6E-08 69.7 16.2 150 191-353 141-306 (445)
161 COG1223 Predicted ATPase (AAA+ 97.4 0.002 4.3E-08 63.0 12.2 181 163-353 120-318 (368)
162 TIGR00763 lon ATP-dependent pr 97.4 0.0037 8E-08 75.2 17.5 53 163-215 319-371 (775)
163 TIGR00602 rad24 checkpoint pro 97.4 0.0016 3.5E-08 74.8 13.5 53 162-215 82-134 (637)
164 PRK00149 dnaA chromosomal repl 97.4 0.0019 4E-08 72.9 14.0 156 191-359 148-321 (450)
165 PRK10536 hypothetical protein; 97.4 0.0023 4.9E-08 64.2 12.9 42 164-213 55-96 (262)
166 PRK14086 dnaA chromosomal repl 97.4 0.0016 3.4E-08 73.8 12.9 151 192-358 315-486 (617)
167 KOG1859 Leucine-rich repeat pr 97.4 5.2E-06 1.1E-10 91.5 -6.7 108 554-666 181-291 (1096)
168 KOG2004 Mitochondrial ATP-depe 97.4 0.00037 8.1E-09 77.5 7.2 54 162-215 409-462 (906)
169 TIGR03689 pup_AAA proteasome A 97.3 0.00039 8.4E-09 77.6 7.3 164 163-328 181-378 (512)
170 KOG2543 Origin recognition com 97.3 0.0084 1.8E-07 62.3 16.2 162 163-328 5-193 (438)
171 COG0466 Lon ATP-dependent Lon 97.3 0.00031 6.8E-09 78.5 6.1 53 163-215 322-374 (782)
172 KOG2982 Uncharacterized conser 97.3 0.00014 3.1E-09 72.1 2.9 82 557-641 68-156 (418)
173 PRK07399 DNA polymerase III su 97.3 0.0067 1.5E-07 64.2 15.7 181 164-360 4-221 (314)
174 KOG4579 Leucine-rich repeat (L 97.3 1.8E-05 3.9E-10 69.2 -3.0 102 561-664 28-133 (177)
175 PRK08116 hypothetical protein; 97.3 0.00088 1.9E-08 69.3 8.3 97 192-295 115-221 (268)
176 PRK06871 DNA polymerase III su 97.2 0.019 4.1E-07 60.7 17.8 167 173-355 11-198 (325)
177 PLN00020 ribulose bisphosphate 97.2 0.0018 3.8E-08 67.9 9.7 73 189-266 146-223 (413)
178 KOG1947 Leucine rich repeat pr 97.2 3.7E-05 8E-10 88.4 -2.8 132 581-712 186-331 (482)
179 COG0542 clpA ATP-binding subun 97.2 0.0015 3.3E-08 75.4 9.8 119 163-282 490-620 (786)
180 COG0593 DnaA ATPase involved i 97.2 0.0034 7.3E-08 67.5 11.8 129 190-334 112-263 (408)
181 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00037 8E-09 73.5 4.5 51 165-215 52-102 (361)
182 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0056 1.2E-07 67.2 13.4 198 162-364 188-410 (802)
183 TIGR01243 CDC48 AAA family ATP 97.2 0.0037 8E-08 75.1 13.6 182 163-354 452-657 (733)
184 PF14516 AAA_35: AAA-like doma 97.2 0.016 3.5E-07 62.2 17.2 189 164-366 11-245 (331)
185 PRK08769 DNA polymerase III su 97.2 0.012 2.5E-07 62.2 15.5 171 173-360 13-208 (319)
186 PF12799 LRR_4: Leucine Rich r 97.2 0.00042 9.2E-09 49.0 3.2 34 584-618 2-35 (44)
187 PRK10787 DNA-binding ATP-depen 97.1 0.0029 6.3E-08 75.3 12.1 53 163-215 321-373 (784)
188 cd01128 rho_factor Transcripti 97.1 0.0012 2.6E-08 67.1 7.4 76 190-265 15-113 (249)
189 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0017 3.7E-08 78.2 9.9 129 163-294 565-718 (852)
190 PRK08058 DNA polymerase III su 97.1 0.0098 2.1E-07 63.8 14.6 155 165-326 6-180 (329)
191 smart00382 AAA ATPases associa 97.1 0.0028 6E-08 58.8 9.3 24 192-215 3-26 (148)
192 KOG0991 Replication factor C, 97.1 0.0038 8.3E-08 60.0 9.9 47 163-215 26-72 (333)
193 PF14532 Sigma54_activ_2: Sigm 97.0 0.0013 2.7E-08 60.9 6.4 109 167-295 1-110 (138)
194 KOG3665 ZYG-1-like serine/thre 97.0 0.00042 9.1E-09 80.8 3.8 129 533-665 122-261 (699)
195 PRK07993 DNA polymerase III su 97.0 0.021 4.5E-07 61.1 16.1 170 172-357 10-201 (334)
196 PRK08181 transposase; Validate 97.0 0.002 4.4E-08 66.2 8.0 94 192-295 107-209 (269)
197 PRK06526 transposase; Provisio 97.0 0.0012 2.6E-08 67.5 6.2 93 192-295 99-201 (254)
198 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.8E-08 62.1 5.7 32 585-618 44-75 (233)
199 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0032 7E-08 70.5 10.0 180 164-354 228-429 (489)
200 PRK09183 transposase/IS protei 96.9 0.0017 3.6E-08 66.9 6.8 95 191-295 102-206 (259)
201 COG1875 NYN ribonuclease and A 96.9 0.0029 6.3E-08 65.2 8.3 39 167-211 227-265 (436)
202 PF00910 RNA_helicase: RNA hel 96.9 0.0022 4.7E-08 56.2 6.5 21 194-214 1-21 (107)
203 TIGR01243 CDC48 AAA family ATP 96.9 0.0034 7.5E-08 75.3 10.1 184 163-355 177-382 (733)
204 TIGR02639 ClpA ATP-dependent C 96.9 0.0043 9.3E-08 74.3 10.8 117 164-281 454-579 (731)
205 KOG4579 Leucine-rich repeat (L 96.9 0.00012 2.5E-09 64.3 -1.7 92 555-648 48-140 (177)
206 PRK13531 regulatory ATPase Rav 96.9 0.0016 3.6E-08 71.3 6.6 43 165-215 21-63 (498)
207 PHA00729 NTP-binding motif con 96.9 0.0019 4.2E-08 63.7 6.4 74 190-264 16-91 (226)
208 PRK11331 5-methylcytosine-spec 96.9 0.0019 4.1E-08 70.2 6.9 44 164-215 175-218 (459)
209 PRK06090 DNA polymerase III su 96.9 0.044 9.6E-07 57.8 16.7 169 173-360 12-201 (319)
210 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0036 7.8E-08 76.1 9.9 130 164-294 565-717 (852)
211 PRK09376 rho transcription ter 96.8 0.002 4.3E-08 68.4 6.2 76 190-265 168-266 (416)
212 PRK08118 topology modulation p 96.8 0.0025 5.5E-08 60.8 6.4 64 193-265 3-68 (167)
213 TIGR02640 gas_vesic_GvpN gas v 96.8 0.023 5E-07 58.8 14.0 23 193-215 23-45 (262)
214 PF13177 DNA_pol3_delta2: DNA 96.8 0.0081 1.8E-07 57.0 9.7 123 168-296 1-143 (162)
215 PRK10865 protein disaggregatio 96.8 0.0056 1.2E-07 74.1 10.6 118 163-281 567-696 (857)
216 COG0542 clpA ATP-binding subun 96.8 0.0064 1.4E-07 70.4 10.3 156 164-328 170-346 (786)
217 COG5238 RNA1 Ran GTPase-activa 96.8 0.00043 9.2E-09 68.0 0.7 88 556-644 26-133 (388)
218 PRK06964 DNA polymerase III su 96.8 0.027 5.9E-07 60.0 14.3 94 254-360 131-225 (342)
219 TIGR00767 rho transcription te 96.8 0.0037 8E-08 66.8 7.6 75 191-265 168-265 (415)
220 PRK08699 DNA polymerase III su 96.7 0.011 2.5E-07 62.8 11.3 136 189-327 19-184 (325)
221 COG2812 DnaX DNA polymerase II 96.7 0.01 2.2E-07 66.0 11.1 182 163-354 15-214 (515)
222 TIGR02902 spore_lonB ATP-depen 96.7 0.0065 1.4E-07 69.5 10.0 44 164-213 65-108 (531)
223 PRK07952 DNA replication prote 96.7 0.0046 9.9E-08 62.6 7.6 96 191-294 99-204 (244)
224 COG5238 RNA1 Ran GTPase-activa 96.7 0.00097 2.1E-08 65.5 2.6 86 532-617 29-130 (388)
225 PRK12377 putative replication 96.6 0.0021 4.5E-08 65.3 4.7 95 191-294 101-205 (248)
226 KOG2035 Replication factor C, 96.6 0.026 5.6E-07 56.1 11.8 171 166-359 15-228 (351)
227 COG1373 Predicted ATPase (AAA+ 96.6 0.013 2.9E-07 64.3 11.2 119 193-323 39-162 (398)
228 PRK07261 topology modulation p 96.6 0.0021 4.4E-08 61.8 4.0 64 193-265 2-67 (171)
229 PF13207 AAA_17: AAA domain; P 96.6 0.0015 3.3E-08 58.8 2.9 23 193-215 1-23 (121)
230 PRK08939 primosomal protein Dn 96.6 0.0083 1.8E-07 63.2 8.7 115 168-294 135-260 (306)
231 PRK11034 clpA ATP-dependent Cl 96.6 0.0083 1.8E-07 71.0 9.5 117 164-281 458-583 (758)
232 CHL00095 clpC Clp protease ATP 96.5 0.0068 1.5E-07 73.5 8.8 131 163-294 508-661 (821)
233 PRK04296 thymidine kinase; Pro 96.5 0.0053 1.1E-07 60.1 6.3 102 192-296 3-117 (190)
234 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.03 6.5E-07 56.2 11.5 61 237-299 138-203 (254)
235 PRK15455 PrkA family serine pr 96.5 0.002 4.3E-08 71.6 3.4 55 164-218 76-130 (644)
236 KOG0741 AAA+-type ATPase [Post 96.5 0.012 2.7E-07 63.4 9.1 129 189-327 536-685 (744)
237 PF00158 Sigma54_activat: Sigm 96.5 0.0081 1.8E-07 57.2 7.2 46 166-215 1-46 (168)
238 KOG1514 Origin recognition com 96.5 0.061 1.3E-06 60.6 14.8 162 163-328 395-589 (767)
239 COG2884 FtsE Predicted ATPase 96.4 0.053 1.2E-06 51.0 11.9 56 247-302 147-204 (223)
240 PRK10733 hflB ATP-dependent me 96.4 0.018 3.9E-07 67.6 11.3 158 164-330 152-337 (644)
241 KOG0731 AAA+-type ATPase conta 96.4 0.076 1.6E-06 61.4 15.6 183 162-356 309-520 (774)
242 PRK06921 hypothetical protein; 96.4 0.01 2.2E-07 61.3 8.1 25 191-215 117-141 (266)
243 PF02562 PhoH: PhoH-like prote 96.4 0.0058 1.3E-07 59.6 5.9 38 168-213 4-41 (205)
244 PF01695 IstB_IS21: IstB-like 96.4 0.0013 2.9E-08 63.4 1.2 94 191-295 47-150 (178)
245 PF04665 Pox_A32: Poxvirus A32 96.3 0.009 2E-07 59.7 6.9 24 192-215 14-37 (241)
246 COG2607 Predicted ATPase (AAA+ 96.3 0.011 2.3E-07 57.6 6.9 121 161-295 57-183 (287)
247 PF10443 RNA12: RNA12 protein; 96.3 0.12 2.6E-06 55.7 15.3 196 169-370 1-288 (431)
248 KOG0734 AAA+-type ATPase conta 96.3 0.1 2.2E-06 56.8 14.6 158 163-328 303-484 (752)
249 PRK06696 uridine kinase; Valid 96.3 0.0055 1.2E-07 61.9 5.1 44 168-214 2-45 (223)
250 COG4618 ArpD ABC-type protease 96.2 0.02 4.4E-07 61.9 9.1 23 192-214 363-385 (580)
251 KOG0730 AAA+-type ATPase [Post 96.2 0.051 1.1E-06 60.8 12.4 173 164-342 434-629 (693)
252 PRK04132 replication factor C 96.2 0.084 1.8E-06 62.8 15.0 148 199-359 574-730 (846)
253 PHA02244 ATPase-like protein 96.2 0.018 4E-07 60.9 8.5 95 193-294 121-230 (383)
254 KOG2739 Leucine-rich acidic nu 96.2 0.0017 3.8E-08 64.0 0.9 82 606-687 64-152 (260)
255 PF13671 AAA_33: AAA domain; P 96.2 0.0078 1.7E-07 56.0 5.3 23 193-215 1-23 (143)
256 cd03214 ABC_Iron-Siderophores_ 96.2 0.048 1E-06 53.0 10.9 109 191-299 25-162 (180)
257 TIGR02974 phageshock_pspF psp 96.1 0.033 7.2E-07 59.6 10.4 46 166-215 1-46 (329)
258 PF07728 AAA_5: AAA domain (dy 96.1 0.0011 2.4E-08 61.4 -0.7 22 194-215 2-23 (139)
259 KOG0652 26S proteasome regulat 96.1 0.22 4.9E-06 49.0 14.6 172 164-344 171-371 (424)
260 KOG0744 AAA+-type ATPase [Post 96.1 0.035 7.5E-07 56.5 9.4 69 191-265 177-260 (423)
261 KOG0733 Nuclear AAA ATPase (VC 96.1 0.048 1E-06 60.2 11.1 153 191-354 545-718 (802)
262 PRK06835 DNA replication prote 96.1 0.012 2.6E-07 62.5 6.6 95 192-294 184-288 (329)
263 KOG1969 DNA replication checkp 96.1 0.02 4.3E-07 64.5 8.3 80 189-279 324-411 (877)
264 PRK03839 putative kinase; Prov 96.0 0.0095 2.1E-07 58.0 5.1 23 193-215 2-24 (180)
265 KOG1644 U2-associated snRNP A' 96.0 0.01 2.2E-07 56.2 4.9 102 560-663 42-149 (233)
266 PF13604 AAA_30: AAA domain; P 95.9 0.028 6.1E-07 55.3 8.2 97 191-295 18-131 (196)
267 TIGR01817 nifA Nif-specific re 95.9 0.049 1.1E-06 63.1 11.4 50 162-215 194-243 (534)
268 COG0464 SpoVK ATPases of the A 95.9 0.053 1.2E-06 62.2 11.7 159 164-329 242-424 (494)
269 KOG0727 26S proteasome regulat 95.9 0.16 3.4E-06 49.7 12.7 162 164-330 155-341 (408)
270 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.018 4E-07 53.7 6.2 103 193-296 4-139 (159)
271 KOG0728 26S proteasome regulat 95.9 0.12 2.6E-06 50.5 11.7 151 165-328 147-331 (404)
272 KOG2739 Leucine-rich acidic nu 95.9 0.0043 9.4E-08 61.3 2.1 83 559-643 42-128 (260)
273 PRK11608 pspF phage shock prot 95.9 0.024 5.2E-07 60.7 7.9 48 164-215 6-53 (326)
274 KOG0729 26S proteasome regulat 95.9 0.04 8.7E-07 54.2 8.5 97 164-266 177-281 (435)
275 COG0470 HolB ATPase involved i 95.8 0.051 1.1E-06 58.7 10.6 127 165-295 2-149 (325)
276 cd03216 ABC_Carb_Monos_I This 95.8 0.035 7.6E-07 52.9 8.2 108 191-299 26-146 (163)
277 COG1618 Predicted nucleotide k 95.8 0.0063 1.4E-07 55.4 2.8 25 191-215 5-29 (179)
278 PRK00625 shikimate kinase; Pro 95.8 0.048 1E-06 52.2 9.0 23 193-215 2-24 (173)
279 KOG0739 AAA+-type ATPase [Post 95.8 0.13 2.8E-06 51.8 11.9 93 164-266 133-236 (439)
280 cd03247 ABCC_cytochrome_bd The 95.8 0.062 1.3E-06 52.1 10.0 109 191-299 28-161 (178)
281 PRK12608 transcription termina 95.8 0.023 4.9E-07 60.5 7.3 88 172-264 119-229 (380)
282 cd03228 ABCC_MRP_Like The MRP 95.8 0.062 1.4E-06 51.7 9.9 109 191-299 28-159 (171)
283 PRK15429 formate hydrogenlyase 95.8 0.018 3.9E-07 68.7 7.1 126 163-295 375-521 (686)
284 PRK07667 uridine kinase; Provi 95.7 0.014 3E-07 57.4 5.0 38 173-214 3-40 (193)
285 PRK05800 cobU adenosylcobinami 95.7 0.017 3.7E-07 55.2 5.4 22 193-214 3-24 (170)
286 PF07693 KAP_NTPase: KAP famil 95.7 0.32 7E-06 52.4 16.0 43 170-215 2-44 (325)
287 COG1224 TIP49 DNA helicase TIP 95.7 0.22 4.8E-06 51.6 13.2 49 163-215 38-89 (450)
288 PF13238 AAA_18: AAA domain; P 95.6 0.0074 1.6E-07 54.9 2.6 22 194-215 1-22 (129)
289 KOG2228 Origin recognition com 95.6 0.037 7.9E-07 56.8 7.6 163 164-328 24-219 (408)
290 PRK11889 flhF flagellar biosyn 95.6 0.11 2.3E-06 55.8 11.3 24 190-213 240-263 (436)
291 cd03263 ABC_subfamily_A The AB 95.6 0.089 1.9E-06 53.1 10.6 24 191-214 28-51 (220)
292 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.097 2.1E-06 53.6 10.8 111 191-301 25-182 (246)
293 COG1484 DnaC DNA replication p 95.6 0.038 8.3E-07 56.6 7.7 75 190-273 104-185 (254)
294 PF00448 SRP54: SRP54-type pro 95.6 0.048 1E-06 53.5 8.0 23 191-213 1-23 (196)
295 cd03222 ABC_RNaseL_inhibitor T 95.5 0.077 1.7E-06 51.0 9.2 108 191-300 25-137 (177)
296 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.079 1.7E-06 51.6 9.6 23 193-215 1-23 (183)
297 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.11 2.4E-06 48.2 10.0 104 191-299 26-131 (144)
298 PRK13695 putative NTPase; Prov 95.5 0.037 7.9E-07 53.5 7.0 22 193-214 2-23 (174)
299 COG0396 sufC Cysteine desulfur 95.5 0.2 4.3E-06 49.0 11.5 58 246-303 153-212 (251)
300 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.017 3.7E-07 60.5 4.7 52 164-215 61-112 (358)
301 PF05659 RPW8: Arabidopsis bro 95.5 0.12 2.6E-06 47.5 9.7 81 2-82 3-86 (147)
302 PF00485 PRK: Phosphoribulokin 95.4 0.011 2.5E-07 58.1 3.1 23 193-215 1-23 (194)
303 KOG1532 GTPase XAB1, interacts 95.4 0.057 1.2E-06 53.5 7.6 28 188-215 16-43 (366)
304 cd03225 ABC_cobalt_CbiO_domain 95.4 0.13 2.9E-06 51.4 10.8 24 191-214 27-50 (211)
305 COG1102 Cmk Cytidylate kinase 95.4 0.016 3.5E-07 52.9 3.5 39 193-231 2-42 (179)
306 PRK08233 hypothetical protein; 95.3 0.014 2.9E-07 57.0 3.5 25 191-215 3-27 (182)
307 cd03230 ABC_DR_subfamily_A Thi 95.3 0.099 2.1E-06 50.4 9.4 110 191-300 26-160 (173)
308 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.046 1E-06 54.0 7.2 111 191-303 29-159 (204)
309 cd02019 NK Nucleoside/nucleoti 95.3 0.013 2.9E-07 46.3 2.6 22 193-214 1-22 (69)
310 cd01131 PilT Pilus retraction 95.3 0.025 5.4E-07 55.8 5.1 101 193-298 3-112 (198)
311 COG0465 HflB ATP-dependent Zn 95.3 0.26 5.7E-06 55.8 13.5 187 160-355 146-356 (596)
312 cd03223 ABCD_peroxisomal_ALDP 95.3 0.14 3.1E-06 48.9 10.1 102 191-298 27-151 (166)
313 COG1136 SalX ABC-type antimicr 95.2 0.16 3.4E-06 50.3 10.4 64 239-302 143-210 (226)
314 KOG1051 Chaperone HSP104 and r 95.2 0.12 2.6E-06 61.2 11.1 115 164-281 562-686 (898)
315 TIGR00235 udk uridine kinase. 95.2 0.017 3.6E-07 57.6 3.8 26 189-214 4-29 (207)
316 PRK05480 uridine/cytidine kina 95.2 0.016 3.5E-07 57.9 3.6 27 189-215 4-30 (209)
317 cd03246 ABCC_Protease_Secretio 95.2 0.082 1.8E-06 50.9 8.5 109 191-299 28-160 (173)
318 PRK06547 hypothetical protein; 95.2 0.026 5.6E-07 54.1 4.7 27 189-215 13-39 (172)
319 PTZ00301 uridine kinase; Provi 95.2 0.015 3.2E-07 57.6 3.1 23 191-213 3-25 (210)
320 CHL00206 ycf2 Ycf2; Provisiona 95.2 0.18 3.9E-06 63.8 12.7 26 190-215 1629-1654(2281)
321 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.041 9E-07 54.9 6.2 112 191-302 29-161 (213)
322 PRK05022 anaerobic nitric oxid 95.1 0.068 1.5E-06 61.3 8.8 49 163-215 186-234 (509)
323 cd03269 ABC_putative_ATPase Th 95.1 0.16 3.5E-06 50.7 10.6 24 191-214 26-49 (210)
324 PRK13538 cytochrome c biogenes 95.1 0.19 4.1E-06 49.9 11.0 24 191-214 27-50 (204)
325 PRK14527 adenylate kinase; Pro 95.1 0.1 2.2E-06 51.3 8.9 75 190-265 5-92 (191)
326 COG1120 FepC ABC-type cobalami 95.1 0.24 5.2E-06 50.2 11.4 24 191-214 28-51 (258)
327 cd03369 ABCC_NFT1 Domain 2 of 95.1 0.21 4.7E-06 49.7 11.3 24 191-214 34-57 (207)
328 cd03259 ABC_Carb_Solutes_like 95.1 0.12 2.6E-06 51.8 9.6 23 191-213 26-48 (213)
329 COG1124 DppF ABC-type dipeptid 95.1 0.17 3.8E-06 49.9 10.0 23 191-213 33-55 (252)
330 COG0563 Adk Adenylate kinase a 95.1 0.064 1.4E-06 51.6 7.1 23 193-215 2-24 (178)
331 cd03264 ABC_drug_resistance_li 95.1 0.17 3.8E-06 50.5 10.7 22 193-214 27-48 (211)
332 PRK13657 cyclic beta-1,2-gluca 95.1 0.078 1.7E-06 62.4 9.4 24 191-214 361-384 (588)
333 cd03252 ABCC_Hemolysin The ABC 95.1 0.12 2.6E-06 52.8 9.7 50 250-299 151-201 (237)
334 TIGR02858 spore_III_AA stage I 95.1 0.14 3.1E-06 52.8 10.0 106 190-300 110-234 (270)
335 cd03215 ABC_Carb_Monos_II This 95.1 0.19 4.1E-06 48.9 10.5 25 191-215 26-50 (182)
336 COG0572 Udk Uridine kinase [Nu 95.0 0.021 4.5E-07 55.8 3.6 27 189-215 6-32 (218)
337 cd03224 ABC_TM1139_LivF_branch 95.0 0.15 3.2E-06 51.5 10.1 24 191-214 26-49 (222)
338 PRK06762 hypothetical protein; 95.0 0.018 3.8E-07 55.2 3.1 25 191-215 2-26 (166)
339 KOG0924 mRNA splicing factor A 95.0 0.15 3.3E-06 56.9 10.3 109 191-300 371-515 (1042)
340 PHA02575 1 deoxynucleoside mon 95.0 0.17 3.6E-06 49.8 9.7 22 193-214 2-23 (227)
341 PRK13543 cytochrome c biogenes 95.0 0.24 5.2E-06 49.7 11.3 24 191-214 37-60 (214)
342 PRK13539 cytochrome c biogenes 95.0 0.15 3.3E-06 50.8 9.8 24 191-214 28-51 (207)
343 TIGR00960 3a0501s02 Type II (G 95.0 0.3 6.5E-06 49.0 12.1 24 191-214 29-52 (216)
344 PRK14974 cell division protein 95.0 0.16 3.6E-06 54.0 10.4 24 190-213 139-162 (336)
345 TIGR01650 PD_CobS cobaltochela 94.9 0.13 2.8E-06 54.1 9.3 43 165-215 46-88 (327)
346 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.047 1E-06 58.8 6.3 104 189-297 60-169 (362)
347 COG1117 PstB ABC-type phosphat 94.9 0.19 4.2E-06 48.4 9.4 25 189-213 31-55 (253)
348 PF03215 Rad17: Rad17 cell cyc 94.9 0.1 2.2E-06 59.1 9.0 51 164-215 19-69 (519)
349 PRK10923 glnG nitrogen regulat 94.9 0.17 3.7E-06 57.7 11.2 48 164-215 138-185 (469)
350 KOG2123 Uncharacterized conser 94.9 0.0011 2.4E-08 65.4 -5.6 53 561-616 20-72 (388)
351 PRK13540 cytochrome c biogenes 94.9 0.17 3.8E-06 50.0 9.9 24 191-214 27-50 (200)
352 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.9 0.23 4.9E-06 50.2 10.9 24 191-214 48-71 (224)
353 PRK00279 adk adenylate kinase; 94.9 0.071 1.5E-06 53.5 7.1 73 193-266 2-88 (215)
354 cd03226 ABC_cobalt_CbiO_domain 94.8 0.28 6.1E-06 48.8 11.3 24 191-214 26-49 (205)
355 PRK12339 2-phosphoglycerate ki 94.8 0.08 1.7E-06 51.9 7.2 42 191-232 3-46 (197)
356 cd03238 ABC_UvrA The excision 94.8 0.12 2.5E-06 49.7 8.1 109 191-299 21-153 (176)
357 PRK09270 nucleoside triphospha 94.8 0.026 5.6E-07 57.3 3.9 26 189-214 31-56 (229)
358 cd03258 ABC_MetN_methionine_tr 94.8 0.17 3.8E-06 51.5 10.0 24 191-214 31-54 (233)
359 PRK15177 Vi polysaccharide exp 94.8 0.24 5.2E-06 49.5 10.8 24 191-214 13-36 (213)
360 COG2274 SunT ABC-type bacterio 94.8 0.2 4.3E-06 59.0 11.6 23 191-213 499-521 (709)
361 cd03251 ABCC_MsbA MsbA is an e 94.8 0.15 3.3E-06 51.9 9.5 24 191-214 28-51 (234)
362 cd03301 ABC_MalK_N The N-termi 94.8 0.19 4.1E-06 50.4 10.0 24 191-214 26-49 (213)
363 PRK05541 adenylylsulfate kinas 94.8 0.02 4.4E-07 55.4 2.8 26 190-215 6-31 (176)
364 cd03265 ABC_DrrA DrrA is the A 94.8 0.21 4.6E-06 50.3 10.3 24 191-214 26-49 (220)
365 TIGR00968 3a0106s01 sulfate AB 94.8 0.19 4E-06 51.4 10.0 24 191-214 26-49 (237)
366 cd03248 ABCC_TAP TAP, the Tran 94.8 0.18 3.9E-06 51.1 9.8 24 191-214 40-63 (226)
367 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.7 0.2 4.2E-06 51.3 10.2 24 191-214 29-52 (238)
368 TIGR01277 thiQ thiamine ABC tr 94.7 0.27 5.8E-06 49.3 10.9 24 191-214 24-47 (213)
369 TIGR01360 aden_kin_iso1 adenyl 94.7 0.023 5E-07 55.7 3.1 25 191-215 3-27 (188)
370 COG1126 GlnQ ABC-type polar am 94.7 0.31 6.7E-06 47.2 10.3 23 191-213 28-50 (240)
371 PF00406 ADK: Adenylate kinase 94.7 0.076 1.7E-06 49.9 6.5 80 196-277 1-94 (151)
372 cd03254 ABCC_Glucan_exporter_l 94.7 0.19 4.1E-06 51.0 9.8 24 191-214 29-52 (229)
373 TIGR03864 PQQ_ABC_ATP ABC tran 94.7 0.18 3.9E-06 51.4 9.7 24 191-214 27-50 (236)
374 PF13306 LRR_5: Leucine rich r 94.7 0.11 2.4E-06 47.1 7.3 57 556-615 8-66 (129)
375 PRK04040 adenylate kinase; Pro 94.7 0.024 5.3E-07 55.2 3.0 24 192-215 3-26 (188)
376 PRK13650 cbiO cobalt transport 94.7 0.26 5.6E-06 51.7 11.0 24 191-214 33-56 (279)
377 TIGR02868 CydC thiol reductant 94.7 0.12 2.7E-06 59.8 9.4 25 190-214 360-384 (529)
378 KOG0927 Predicted transporter 94.6 0.22 4.8E-06 54.6 10.3 56 247-303 231-287 (614)
379 cd03293 ABC_NrtD_SsuB_transpor 94.6 0.26 5.6E-06 49.7 10.6 24 191-214 30-53 (220)
380 PRK11248 tauB taurine transpor 94.6 0.19 4.2E-06 51.9 9.8 24 191-214 27-50 (255)
381 COG4608 AppF ABC-type oligopep 94.6 0.17 3.7E-06 51.0 8.9 113 191-303 39-178 (268)
382 cd03292 ABC_FtsE_transporter F 94.6 0.28 6E-06 49.2 10.7 24 191-214 27-50 (214)
383 TIGR03522 GldA_ABC_ATP gliding 94.6 0.3 6.6E-06 51.8 11.5 24 191-214 28-51 (301)
384 TIGR02857 CydD thiol reductant 94.6 0.15 3.3E-06 59.2 9.9 25 190-214 347-371 (529)
385 PF00560 LRR_1: Leucine Rich R 94.6 0.023 5E-07 33.3 1.6 19 562-580 2-20 (22)
386 TIGR00708 cobA cob(I)alamin ad 94.6 0.11 2.5E-06 49.1 7.1 105 192-296 6-141 (173)
387 PF13306 LRR_5: Leucine rich r 94.6 0.11 2.4E-06 47.1 7.1 104 527-640 6-112 (129)
388 TIGR00150 HI0065_YjeE ATPase, 94.6 0.052 1.1E-06 49.0 4.6 41 171-215 6-46 (133)
389 PRK09544 znuC high-affinity zi 94.5 0.29 6.2E-06 50.4 10.8 24 191-214 30-53 (251)
390 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.12 2.6E-06 48.9 7.4 108 192-301 26-146 (157)
391 KOG0730 AAA+-type ATPase [Post 94.5 0.2 4.4E-06 56.3 10.0 180 165-353 185-385 (693)
392 COG1428 Deoxynucleoside kinase 94.5 0.026 5.6E-07 54.3 2.7 25 191-215 4-28 (216)
393 cd03253 ABCC_ATM1_transporter 94.5 0.22 4.7E-06 50.8 9.9 52 248-299 148-200 (236)
394 cd03285 ABC_MSH2_euk MutS2 hom 94.5 0.033 7.2E-07 55.9 3.7 169 190-365 29-218 (222)
395 cd00544 CobU Adenosylcobinamid 94.5 0.058 1.3E-06 51.4 5.1 22 193-214 1-22 (169)
396 cd03244 ABCC_MRP_domain2 Domai 94.5 0.43 9.4E-06 48.1 11.8 24 191-214 30-53 (221)
397 PRK10908 cell division protein 94.5 0.45 9.7E-06 48.0 11.9 24 191-214 28-51 (222)
398 cd03300 ABC_PotA_N PotA is an 94.5 0.24 5.3E-06 50.3 10.0 24 191-214 26-49 (232)
399 cd03267 ABC_NatA_like Similar 94.5 0.38 8.2E-06 49.0 11.4 24 191-214 47-70 (236)
400 TIGR01351 adk adenylate kinase 94.4 0.075 1.6E-06 53.1 6.1 71 194-265 2-87 (210)
401 PRK00771 signal recognition pa 94.4 0.24 5.2E-06 54.8 10.4 25 190-214 94-118 (437)
402 cd03266 ABC_NatA_sodium_export 94.4 0.25 5.3E-06 49.8 9.9 24 191-214 31-54 (218)
403 cd03218 ABC_YhbG The ABC trans 94.4 0.28 6.1E-06 49.9 10.4 24 191-214 26-49 (232)
404 PF01583 APS_kinase: Adenylyls 94.4 0.037 8E-07 51.5 3.3 25 191-215 2-26 (156)
405 COG1936 Predicted nucleotide k 94.4 0.032 6.8E-07 51.8 2.8 20 193-212 2-21 (180)
406 PF08433 KTI12: Chromatin asso 94.4 0.021 4.6E-07 58.8 1.9 23 192-214 2-24 (270)
407 TIGR01188 drrA daunorubicin re 94.4 0.31 6.8E-06 51.8 10.9 24 191-214 19-42 (302)
408 cd03231 ABC_CcmA_heme_exporter 94.3 0.34 7.3E-06 48.0 10.5 24 191-214 26-49 (201)
409 TIGR03410 urea_trans_UrtE urea 94.3 0.27 5.8E-06 50.0 10.0 24 191-214 26-49 (230)
410 TIGR03375 type_I_sec_LssB type 94.3 0.16 3.5E-06 61.1 9.6 24 191-214 491-514 (694)
411 PF07726 AAA_3: ATPase family 94.3 0.026 5.5E-07 50.0 2.0 22 194-215 2-23 (131)
412 cd02027 APSK Adenosine 5'-phos 94.3 0.047 1E-06 51.1 4.0 23 193-215 1-23 (149)
413 PRK13647 cbiO cobalt transport 94.3 0.27 5.9E-06 51.4 10.2 24 191-214 31-54 (274)
414 TIGR02203 MsbA_lipidA lipid A 94.3 0.13 2.7E-06 60.5 8.5 24 191-214 358-381 (571)
415 KOG2123 Uncharacterized conser 94.3 0.0045 9.7E-08 61.3 -2.9 80 556-637 37-123 (388)
416 KOG0738 AAA+-type ATPase [Post 94.3 0.1 2.3E-06 54.5 6.6 52 164-215 212-269 (491)
417 PTZ00494 tuzin-like protein; P 94.3 5.2 0.00011 43.4 19.0 165 160-328 367-544 (664)
418 COG2842 Uncharacterized ATPase 94.2 0.31 6.8E-06 49.6 9.8 113 162-281 70-191 (297)
419 PRK12723 flagellar biosynthesi 94.2 0.23 5E-06 54.0 9.6 24 190-213 173-196 (388)
420 PRK11176 lipid transporter ATP 94.2 0.12 2.7E-06 60.7 8.3 24 191-214 369-392 (582)
421 TIGR02314 ABC_MetN D-methionin 94.2 0.36 7.8E-06 52.0 11.0 24 191-214 31-54 (343)
422 cd02023 UMPK Uridine monophosp 94.2 0.03 6.4E-07 55.5 2.6 21 193-213 1-21 (198)
423 cd02024 NRK1 Nicotinamide ribo 94.2 0.03 6.6E-07 54.1 2.5 22 193-214 1-22 (187)
424 KOG0651 26S proteasome regulat 94.2 0.067 1.5E-06 54.2 4.9 72 189-266 164-236 (388)
425 KOG2170 ATPase of the AAA+ sup 94.2 0.16 3.5E-06 51.4 7.5 114 165-280 83-203 (344)
426 smart00534 MUTSac ATPase domai 94.2 0.039 8.5E-07 53.8 3.3 109 193-302 1-129 (185)
427 PRK14528 adenylate kinase; Pro 94.2 0.22 4.8E-06 48.6 8.5 24 192-215 2-25 (186)
428 TIGR03574 selen_PSTK L-seryl-t 94.2 0.024 5.3E-07 58.4 1.9 23 193-215 1-23 (249)
429 COG0488 Uup ATPase components 94.1 0.42 9.2E-06 54.3 11.8 61 248-314 450-511 (530)
430 cd02020 CMPK Cytidine monophos 94.1 0.051 1.1E-06 50.7 3.9 23 193-215 1-23 (147)
431 PRK13652 cbiO cobalt transport 94.1 0.48 1E-05 49.6 11.6 24 191-214 30-53 (277)
432 cd02025 PanK Pantothenate kina 94.1 0.031 6.6E-07 56.1 2.5 22 193-214 1-22 (220)
433 KOG0735 AAA+-type ATPase [Post 94.1 0.86 1.9E-05 51.8 13.6 156 164-328 667-848 (952)
434 PRK12726 flagellar biosynthesi 94.1 0.32 7E-06 52.0 10.0 78 189-266 204-296 (407)
435 PRK13537 nodulation ABC transp 94.1 0.41 8.9E-06 50.9 11.1 24 191-214 33-56 (306)
436 PRK09361 radB DNA repair and r 94.1 0.14 2.9E-06 51.9 7.2 25 189-213 21-45 (225)
437 TIGR02237 recomb_radB DNA repa 94.1 0.12 2.5E-06 51.7 6.6 25 189-213 10-34 (209)
438 TIGR03499 FlhF flagellar biosy 94.1 0.17 3.7E-06 53.0 8.0 23 190-212 193-215 (282)
439 PRK06067 flagellar accessory p 94.1 0.11 2.4E-06 52.9 6.5 24 189-212 23-46 (234)
440 PRK13409 putative ATPase RIL; 94.0 0.35 7.7E-06 56.3 11.3 111 191-301 365-520 (590)
441 cd03298 ABC_ThiQ_thiamine_tran 94.0 0.43 9.3E-06 47.7 10.6 24 191-214 24-47 (211)
442 PRK11247 ssuB aliphatic sulfon 94.0 0.55 1.2E-05 48.5 11.6 24 191-214 38-61 (257)
443 PRK11174 cysteine/glutathione 94.0 0.39 8.4E-06 56.6 11.9 23 191-213 376-398 (588)
444 PRK13546 teichoic acids export 94.0 0.6 1.3E-05 48.4 11.9 24 191-214 50-73 (264)
445 PRK11153 metN DL-methionine tr 94.0 0.3 6.6E-06 52.8 10.1 24 191-214 31-54 (343)
446 PF12061 DUF3542: Protein of u 94.0 0.13 2.8E-06 51.9 6.5 71 11-81 301-372 (402)
447 TIGR02322 phosphon_PhnN phosph 94.0 0.042 9.2E-07 53.3 3.1 24 192-215 2-25 (179)
448 PRK05703 flhF flagellar biosyn 94.0 0.46 1E-05 52.7 11.5 21 191-211 221-241 (424)
449 PTZ00088 adenylate kinase 1; P 93.9 0.12 2.7E-06 51.9 6.4 22 194-215 9-30 (229)
450 COG4088 Predicted nucleotide k 93.9 0.063 1.4E-06 51.1 3.8 23 192-214 2-24 (261)
451 TIGR03740 galliderm_ABC gallid 93.9 0.23 5E-06 50.2 8.4 24 191-214 26-49 (223)
452 cd00227 CPT Chloramphenicol (C 93.9 0.042 9.2E-07 53.1 2.9 24 192-215 3-26 (175)
453 TIGR01846 type_I_sec_HlyB type 93.9 0.18 4E-06 60.5 8.9 24 191-214 483-506 (694)
454 PRK11388 DNA-binding transcrip 93.9 0.16 3.5E-06 60.2 8.3 48 164-215 325-372 (638)
455 PRK00131 aroK shikimate kinase 93.9 0.043 9.2E-07 53.0 2.9 25 191-215 4-28 (175)
456 TIGR01193 bacteriocin_ABC ABC- 93.9 0.2 4.2E-06 60.5 9.2 24 191-214 500-523 (708)
457 PRK10820 DNA-binding transcrip 93.8 0.16 3.6E-06 58.2 8.0 49 163-215 203-251 (520)
458 PRK00889 adenylylsulfate kinas 93.8 0.053 1.2E-06 52.4 3.5 24 191-214 4-27 (175)
459 PRK02496 adk adenylate kinase; 93.8 0.16 3.5E-06 49.5 7.0 73 193-266 3-89 (184)
460 cd02021 GntK Gluconate kinase 93.8 0.04 8.7E-07 51.7 2.6 23 193-215 1-23 (150)
461 PRK12724 flagellar biosynthesi 93.8 0.47 1E-05 51.6 10.8 24 190-213 222-245 (432)
462 TIGR03796 NHPM_micro_ABC1 NHPM 93.8 0.42 9.1E-06 57.7 11.8 24 191-214 505-528 (710)
463 PRK06217 hypothetical protein; 93.8 0.044 9.5E-07 53.4 2.8 23 193-215 3-25 (183)
464 PRK11160 cysteine/glutathione 93.8 0.2 4.3E-06 58.6 8.7 25 191-215 366-390 (574)
465 PRK12727 flagellar biosynthesi 93.8 0.2 4.3E-06 56.0 8.0 24 190-213 349-372 (559)
466 COG2019 AdkA Archaeal adenylat 93.8 0.054 1.2E-06 49.8 3.0 25 191-215 4-28 (189)
467 cd03245 ABCC_bacteriocin_expor 93.8 0.47 1E-05 47.8 10.4 24 191-214 30-53 (220)
468 PF08477 Miro: Miro-like prote 93.8 0.056 1.2E-06 48.3 3.2 22 194-215 2-23 (119)
469 cd03115 SRP The signal recogni 93.7 0.36 7.8E-06 46.5 9.1 22 193-214 2-23 (173)
470 cd03284 ABC_MutS1 MutS1 homolo 93.7 0.048 1E-06 54.5 3.0 21 192-212 31-51 (216)
471 cd02028 UMPK_like Uridine mono 93.7 0.044 9.5E-07 53.0 2.7 22 193-214 1-22 (179)
472 TIGR03263 guanyl_kin guanylate 93.7 0.051 1.1E-06 52.8 3.2 24 192-215 2-25 (180)
473 PRK05986 cob(I)alamin adenolsy 93.7 0.13 2.8E-06 49.5 5.7 105 191-296 22-159 (191)
474 TIGR00554 panK_bact pantothena 93.7 0.084 1.8E-06 54.9 4.8 23 189-211 60-82 (290)
475 cd01428 ADK Adenylate kinase ( 93.7 0.42 9.2E-06 47.0 9.7 22 194-215 2-23 (194)
476 TIGR00958 3a01208 Conjugate Tr 93.7 0.25 5.4E-06 59.4 9.5 25 190-214 506-530 (711)
477 PRK05439 pantothenate kinase; 93.7 0.091 2E-06 55.1 5.0 25 189-213 84-108 (311)
478 PF01078 Mg_chelatase: Magnesi 93.6 0.095 2.1E-06 51.0 4.7 44 164-215 3-46 (206)
479 cd03217 ABC_FeS_Assembly ABC-t 93.6 0.44 9.5E-06 47.2 9.7 109 191-299 26-168 (200)
480 cd03289 ABCC_CFTR2 The CFTR su 93.6 0.39 8.6E-06 50.0 9.7 24 191-214 30-53 (275)
481 PRK11614 livF leucine/isoleuci 93.6 0.31 6.7E-06 49.7 8.9 24 191-214 31-54 (237)
482 PRK13635 cbiO cobalt transport 93.6 0.55 1.2E-05 49.2 10.9 24 191-214 33-56 (279)
483 TIGR01192 chvA glucan exporter 93.6 0.27 5.8E-06 57.7 9.5 23 191-213 361-383 (585)
484 cd00983 recA RecA is a bacter 93.6 0.11 2.3E-06 54.9 5.4 25 189-213 53-77 (325)
485 PF03308 ArgK: ArgK protein; 93.6 0.1 2.3E-06 52.2 5.0 38 172-213 14-51 (266)
486 TIGR03411 urea_trans_UrtD urea 93.6 0.69 1.5E-05 47.3 11.5 24 191-214 28-51 (242)
487 PRK13548 hmuV hemin importer A 93.6 0.63 1.4E-05 48.1 11.2 24 191-214 28-51 (258)
488 KOG0726 26S proteasome regulat 93.6 0.53 1.2E-05 47.3 9.8 97 164-266 185-289 (440)
489 PRK10751 molybdopterin-guanine 93.6 0.072 1.6E-06 50.6 3.7 26 189-214 4-29 (173)
490 cd01133 F1-ATPase_beta F1 ATP 93.6 0.075 1.6E-06 54.4 4.1 25 191-215 69-93 (274)
491 PF10236 DAP3: Mitochondrial r 93.5 0.85 1.8E-05 48.4 12.2 49 309-357 258-306 (309)
492 PRK13636 cbiO cobalt transport 93.5 0.65 1.4E-05 48.8 11.3 24 191-214 32-55 (283)
493 TIGR01842 type_I_sec_PrtD type 93.5 0.3 6.5E-06 56.8 9.6 24 191-214 344-367 (544)
494 PRK14531 adenylate kinase; Pro 93.5 0.19 4E-06 49.0 6.6 23 193-215 4-26 (183)
495 COG4181 Predicted ABC-type tra 93.5 1.2 2.7E-05 41.3 11.1 56 247-302 156-214 (228)
496 TIGR03797 NHPM_micro_ABC2 NHPM 93.5 0.5 1.1E-05 56.8 11.6 24 191-214 479-502 (686)
497 KOG0736 Peroxisome assembly fa 93.4 0.34 7.3E-06 55.4 9.1 100 160-266 668-775 (953)
498 PRK11308 dppF dipeptide transp 93.4 0.5 1.1E-05 50.7 10.4 24 191-214 41-64 (327)
499 COG0237 CoaE Dephospho-CoA kin 93.4 0.077 1.7E-06 51.9 3.8 24 191-214 2-25 (201)
500 TIGR01425 SRP54_euk signal rec 93.4 0.48 1E-05 52.0 10.2 23 190-212 99-121 (429)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-76 Score=688.01 Aligned_cols=733 Identities=28% Similarity=0.421 Sum_probs=549.9
Q ss_pred HHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHhhhcchhhhhhhhhHHHHHHHH
Q 038265 11 LLEKLGSFAYEELLLFCGVKNDLEKLKETLTTVKSVVLDAEEKQVHSHQLRDWLEKLKDACYDAEDALDEFEVEDLRRQV 90 (883)
Q Consensus 11 ~~~kl~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~v~~wl~~l~~~~~d~ed~ld~~~~~~~~~~~ 90 (883)
.++|+.+++.+++..+.++++.+..|+++|..++++++|++.++.....+..|.+.+++++|+++|.++.+.+....++.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~ 87 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKA 87 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888889999999999999999999999999999999999889999999999999999999999999887665432
Q ss_pred hhc---ccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHHhhcccccccccCcCc--cccccccCccccCccCCc
Q 038265 91 IKQ---RSIGRKLRNFFGSSNPIAFCFRMGHQLKKIRERFDEIANMMGKFNLTLRLDDHR--RVVHEEREPTHSFVRTSD 165 (883)
Q Consensus 91 ~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 165 (883)
... +....+..++. .+++..+..+..+.+++.++.+....++......... ..++..++ ..+.....+
T Consensus 88 ~~~l~~~~~~~~~~c~~------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~ 160 (889)
T KOG4658|consen 88 NDLLSTRSVERQRLCLC------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVE-TRPIQSESD 160 (889)
T ss_pred hHHhhhhHHHHHHHhhh------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcc-cCCCCcccc
Confidence 211 10001111111 3455566666666666666666666555333111110 01111122 222333334
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC----------------CCCcHHHHHHHHHH
Q 038265 166 IIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ----------------KDFGKRQIMTKIIN 229 (883)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----------------~~~~~~~~~~~i~~ 229 (883)
||.+..++++.+.|.... ..+|+|+||||+||||||+.++|+. +.|+...++..|+.
T Consensus 161 -VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred -ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 999999999999998743 3899999999999999999999987 57888999999999
Q ss_pred HhhCC--CCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHH-HcccCC
Q 038265 230 SVIGG--NHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALI-MGTMRG 306 (883)
Q Consensus 230 ~~~~~--~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-~~~~~~ 306 (883)
.+... .+.....++++..+.+.|++|||||||||||+.. +|+.+..++|....||+|++|||+..|+.. ++..
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~-- 309 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD-- 309 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC--
Confidence 87542 3333334788899999999999999999999875 599999999999889999999999999987 5543
Q ss_pred CCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCHHHHHHHHcccccccc-
Q 038265 307 TTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDWEHVRDNDIWKLR- 385 (883)
Q Consensus 307 ~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~- 385 (883)
..++++.|+++|||+||++.+|......++.+.++|++++++|+|+|||+.++|+.|+.+.+..+|+.+.+...+...
T Consensus 310 -~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~ 388 (889)
T KOG4658|consen 310 -YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAA 388 (889)
T ss_pred -ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccC
Confidence 789999999999999999999887666666789999999999999999999999999999999999999887655532
Q ss_pred ---CCCCCcchHHHHhhcCCChhhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCCCchHHHHHHHHHHHHHhCCC
Q 038265 386 ---QAPDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEELEKIGMRYFKELCSRSF 462 (883)
Q Consensus 386 ---~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~~~~~~~~~l~~L~~~~l 462 (883)
...+.++.++++||+.||++.|.||+|||+||+||.|+.+.|+.+|+||||+.+......+++.|..|+++|++++|
T Consensus 389 ~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~L 468 (889)
T KOG4658|consen 389 DFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASL 468 (889)
T ss_pred CCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHH
Confidence 22457899999999999999999999999999999999999999999999998876788899999999999999999
Q ss_pred ceecCCCCCCceeeeeehhHHHHHHHHHHhc-----CceEEEcCC--CCCC-----CcceEEEEEEecccccccccccCC
Q 038265 463 FQDLGDLLPGLEVFNCQIHDLMHDLALLVAK-----GECLMVNSA--GQSI-----PKSVRHLSFVSANALRNDFASFLP 530 (883)
Q Consensus 463 l~~~~~~~~~~~~~~~~mHdli~dla~~i~~-----~e~~~~~~~--~~~i-----~~~~~~l~~~~~~~~~~~~~~~~~ 530 (883)
+......+ ...+|+|||++|++|.++++ .+..++... ...+ +...|++++.++..... ..-.
T Consensus 469 l~~~~~~~---~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~ 542 (889)
T KOG4658|consen 469 LIEERDEG---RKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSS 542 (889)
T ss_pred Hhhccccc---ceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCC
Confidence 98765432 23345999999999999998 555444432 1222 34678888887765543 2234
Q ss_pred CCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCc-cccccccccCCCCCceEecccCCccccccCccccCCCcc
Q 038265 531 DLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNS-AIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSL 609 (883)
Q Consensus 531 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 609 (883)
.++.+++|.+..+.. ........+|..++.|++|||++| .+..+|+.+++|.+||||+++++. +..+|..+.++..|
T Consensus 543 ~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence 556899998873221 244455667889999999999965 468999999999999999999865 88999999999999
Q ss_pred cEeecCCCCCCccCCccccCCcccCEEEeCCccccc---cccccCCCCCCCeEEeecCCCccccccccccCcccce----
Q 038265 610 QTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL---LESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRS---- 682 (883)
Q Consensus 610 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~---- 682 (883)
.+||+..+.....+|.....|++|++|.+....... .-..+.++.+|+.+....+.. .+...+..++.|++
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 999999887777777777779999999997654221 112345556666666544332 12223344455543
Q ss_pred eeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCC
Q 038265 683 LVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSS 762 (883)
Q Consensus 683 L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 762 (883)
+.+.+ ......+..+..+.+|+.|.+.+|...+........ ... +. ...++..+.+.+|....++. |. ...
T Consensus 699 l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~--~~~--~~-~f~~l~~~~~~~~~~~r~l~-~~--~f~ 769 (889)
T KOG4658|consen 699 LSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES--LIV--LL-CFPNLSKVSILNCHMLRDLT-WL--LFA 769 (889)
T ss_pred hhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccc--cch--hh-hHHHHHHHHhhccccccccc-hh--hcc
Confidence 33323 233455667888999999999999876432211100 000 00 12245555566665555443 22 245
Q ss_pred CCccEEeecCCCCCccCCc
Q 038265 763 KTLQMLTIGDCPNFMALPR 781 (883)
Q Consensus 763 ~~L~~L~l~~~~~l~~lp~ 781 (883)
++|+.|.+..|+.+..+..
T Consensus 770 ~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred CcccEEEEecccccccCCC
Confidence 8899999998887776543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.1e-63 Score=611.40 Aligned_cols=650 Identities=20% Similarity=0.321 Sum_probs=458.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCcC---ccccc--cccCccccCccCCccccchhhHHHHHHHHhcCCCCCCCCe
Q 038265 117 GHQLKKIRERFDEIANMMGKFNLTLRLDDH---RRVVH--EEREPTHSFVRTSDIIGRYEDGEKIIELLMQTSDGESETV 191 (883)
Q Consensus 117 ~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 191 (883)
..++++|++++.+++...+.. ......+. ...+. .......+..+.+++|||+++++++..+|... ..++
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~-~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYH-SQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCcee-cCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCce
Confidence 357899999999998876532 21100000 00011 01111223345678999999999999988543 3568
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC-CCCcH---------------------------HHHHHHHHHHhhCCCCCCCChHH
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ-KDFGK---------------------------RQIMTKIINSVIGGNHGNLDPDR 243 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~---------------------------~~~~~~i~~~~~~~~~~~~~~~~ 243 (883)
++|+||||||+||||||+++|++. ..|+. ..++..++.++...... ....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI--KIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc--ccCC
Confidence 999999999999999999998875 12211 12233334443322111 1111
Q ss_pred HHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccCCCCceecCCCChhcHHHH
Q 038265 244 MQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMRGTTGYNLQELPYKDCLSL 323 (883)
Q Consensus 244 ~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l~~L~~~~a~~l 323 (883)
...+++.++++|+||||||||+. ..|+.+.......++||+||||||+++++..++.. ++|+++.+++++||+|
T Consensus 286 -~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~---~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 -LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID---HIYEVCLPSNELALEM 359 (1153)
T ss_pred -HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC---eEEEecCCCHHHHHHH
Confidence 14577889999999999999754 46888877666677899999999999998766443 7899999999999999
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCHHHHHHHHccccccccCCCCCcchHHHHhhcCCC
Q 038265 324 FMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLP 403 (883)
Q Consensus 324 f~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~ 403 (883)
|+++||+...+ .+++.+++++|+++|+|+||||+++|++|+++ +..+|+.++...... .+..+.++|++||++|+
T Consensus 360 F~~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~ 434 (1153)
T PLN03210 360 FCRSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLN 434 (1153)
T ss_pred HHHHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccC
Confidence 99999976543 44688999999999999999999999999875 678999988764332 24579999999999998
Q ss_pred h-hhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCCCchHHHHHHHHHHHHHhCCCceecCCCCCCceeeeeehhH
Q 038265 404 P-HLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEELEKIGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHD 482 (883)
Q Consensus 404 ~-~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHd 482 (883)
+ ..|.||+++|+||.+..++ .+..|++.+.... ..-++.|++++|++... ..+ .|||
T Consensus 435 ~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~------~~~--~MHd 492 (1153)
T PLN03210 435 NKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE------DIV--EMHS 492 (1153)
T ss_pred ccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC------CeE--Ehhh
Confidence 6 5999999999999987665 3667777764421 12388899999997642 234 9999
Q ss_pred HHHHHHHHHhcCce-------EEEcCC-------CCCCCcceEEEEEEecccccc-cccccCCCCCceeEEeeccCCcc-
Q 038265 483 LMHDLALLVAKGEC-------LMVNSA-------GQSIPKSVRHLSFVSANALRN-DFASFLPDLGRVRTIMLPIDDER- 546 (883)
Q Consensus 483 li~dla~~i~~~e~-------~~~~~~-------~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~- 546 (883)
++|+||+.+++.+. ...... ...-...++.+++........ -....|..+.+|+.|.+......
T Consensus 493 Ll~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 493 LLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc
Confidence 99999999987553 111000 001112344443322111110 01123455666666555321100
Q ss_pred --------------------------chhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccC
Q 038265 547 --------------------------TSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLP 600 (883)
Q Consensus 547 --------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp 600 (883)
.....+|..| .+.+|+.|+++++.+..+|..+..+++|++|+|++|..++.+|
T Consensus 573 ~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 573 KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred cccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC
Confidence 0001112222 3467888888888888888888888899999998887778888
Q ss_pred ccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCc-cccccccccCCCCCCCeEEeecCCCccccccccc----
Q 038265 601 NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK-QKSLLESGIGCLSSLRFLMISDCGNLEYLFEDID---- 675 (883)
Q Consensus 601 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~---- 675 (883)
. ++.+++|++|+|++|..+..+|..+.++++|+.|++++| .+..+|..+ ++++|+.|++++|..++.+|....
T Consensus 652 ~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~ 729 (1153)
T PLN03210 652 D-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISW 729 (1153)
T ss_pred c-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCe
Confidence 5 788889999999988888888988889999999999875 445666544 677888888887765544332100
Q ss_pred ----------------------------------------------cCcccceeeeccccCCCCCcccCCCCCCccEEEe
Q 038265 676 ----------------------------------------------QLSVLRSLVINSCPRLISLPPAMKYLSSLETLIL 709 (883)
Q Consensus 676 ----------------------------------------------~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L 709 (883)
.+++|+.|+|++|.....+|.++.++++|+.|+|
T Consensus 730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 1235667777777777778888888888888888
Q ss_pred ccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccc
Q 038265 710 LKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEAL 789 (883)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L 789 (883)
++|..+...+. .....+|+.|++++|..+..+|.. .++|+.|+|++| .+..+|.++..+++|
T Consensus 810 s~C~~L~~LP~------------~~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l~~L 871 (1153)
T PLN03210 810 ENCINLETLPT------------GINLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKFSNL 871 (1153)
T ss_pred CCCCCcCeeCC------------CCCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcCCCC
Confidence 88876543221 113457888888888888777653 368889999887 466789889999999
Q ss_pred cccccccccccccCCCCCCCCCCcCeeeccCCcchhhh
Q 038265 790 ENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCER 827 (883)
Q Consensus 790 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~ 827 (883)
+.|+|++|+.+..+|..+..+++|+.+++++|++++..
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 99999999999999988889999999999999988643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-38 Score=338.66 Aligned_cols=264 Identities=36% Similarity=0.604 Sum_probs=204.4
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---------------CCCcHHHHHHHHHHHhhC
Q 038265 169 RYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---------------KDFGKRQIMTKIINSVIG 233 (883)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---------------~~~~~~~~~~~i~~~~~~ 233 (883)
||.++++|.++|.... .+.++|+|+||||+||||||++++++. ...+...++..++.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 668999999999999999999999872 334457788888888865
Q ss_pred CCC---CCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccCCCCce
Q 038265 234 GNH---GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMRGTTGY 310 (883)
Q Consensus 234 ~~~---~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~ 310 (883)
... ...+.+.....+.+.|+++++||||||||+. ..|+.+...++....||+||||||+..++...... ...|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~ 152 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVI 152 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEE
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccc--cccc
Confidence 522 4567788999999999999999999999854 47888888887777899999999999887665531 2689
Q ss_pred ecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCHHHHHHHHccccccccC---C
Q 038265 311 NLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDWEHVRDNDIWKLRQ---A 387 (883)
Q Consensus 311 ~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~---~ 387 (883)
++++|+++||++||.+.++.......+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+.+........ .
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999997655222344557789999999999999999999997655778899887654444322 3
Q ss_pred CCCcchHHHHhhcCCChhhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcCC
Q 038265 388 PDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSP 440 (883)
Q Consensus 388 ~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~ 440 (883)
...++.++.+||+.||++.|.||+|||+||+++.|+.+.++++|+++|+++..
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 45689999999999999999999999999999999999999999999999754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.5e-24 Score=269.77 Aligned_cols=295 Identities=20% Similarity=0.183 Sum_probs=145.4
Q ss_pred hhccCCcccEEEecCcccc-ccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCccc
Q 038265 555 CISKSKSLRVLVLMNSAIE-VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSL 633 (883)
Q Consensus 555 ~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L 633 (883)
.+..+++|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++|++|+|++|...+.+|..++++++|
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 3444455555555554442 344444455555555555444444444445555555555555444444445445555555
Q ss_pred CEEEeCCcccc-ccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccC
Q 038265 634 RMFVVTTKQKS-LLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 634 ~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~ 712 (883)
++|++++|.+. .+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+..+++|+.|++++|
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 55555544443 33344444555555555444443444444444455555555544444444444444445555554444
Q ss_pred CCCccCCcccc-------------ccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccC
Q 038265 713 ESLDLNLNMEM-------------EEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMAL 779 (883)
Q Consensus 713 ~~l~~~~~~~~-------------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~l 779 (883)
........... ...+..+.......+|+.|++++|.....+|.++ ..+++|+.|++++|.....+
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccC
Confidence 32111000000 0000000011122355555555554444455544 34455666666666555556
Q ss_pred CccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchh
Q 038265 780 PRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSD 856 (883)
Q Consensus 780 p~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 856 (883)
|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|..... ....+..+.++..+++.+|.+....
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR-----INSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc-----cChhhccCCCCcEEECcCceeeeec
Confidence 66666666677777777666666666666667777777766642211 1112234667777888887765433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.3e-24 Score=268.11 Aligned_cols=338 Identities=17% Similarity=0.156 Sum_probs=219.8
Q ss_pred ceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccc-ccccccCCCCCceE
Q 038265 509 SVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIE-VLPRKMGNLRQLRH 587 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 587 (883)
.++.+.+..+.. ....+..+..+.+|+.|.+..+. .....+..+.++++|++|++++|.+. .+|..++++.+|++
T Consensus 141 ~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 141 NLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCEEECcCCcc-cccCChHHhcCCCCCEEECccCc---ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 344454433322 22234445566667776665221 12233445566667777777666654 45666666666777
Q ss_pred ecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccc-ccccccCCCCCCCeEEeecCCC
Q 038265 588 LDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISDCGN 666 (883)
Q Consensus 588 L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 666 (883)
|++++|...+.+|..++++++|++|++++|...+.+|..++++++|+.|++++|.+. ..|..+..+++|+.|++++|..
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 777666655566666666667777777666666666666666666666666666654 3455566666666666666655
Q ss_pred ccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccc-------------cccccCCCCCC
Q 038265 667 LEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNME-------------MEEEGSHHDCN 733 (883)
Q Consensus 667 ~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~-------------~~~~~~~~~~~ 733 (883)
...+|..+.++++|+.|++++|...+.+|..+..+++|+.|++++|.......... +...+..+...
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 55555556666666666666666555556666666666666666554321111000 00001111112
Q ss_pred CCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCc
Q 038265 734 NVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTL 813 (883)
Q Consensus 734 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L 813 (883)
....+|+.|++++|.....+|..+ ..+++|+.|++++|+....+|..+..+++|+.|++++|.....+|..+..+++|
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 223478999999987777888887 688999999999999888899999999999999999999888888888899999
Q ss_pred CeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhhh
Q 038265 814 KTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 814 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~ 858 (883)
+.|++++|........ .....++..+++.+|.+....+.
T Consensus 455 ~~L~L~~n~~~~~~p~------~~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 455 QMLSLARNKFFGGLPD------SFGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred cEEECcCceeeeecCc------ccccccceEEECcCCccCCccCh
Confidence 9999999975432211 22347899999999998865543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=9.4e-25 Score=229.63 Aligned_cols=314 Identities=24% Similarity=0.335 Sum_probs=228.6
Q ss_pred ceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEe
Q 038265 509 SVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHL 588 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 588 (883)
++.|+++.++.... +.+.+..++.||++.+..+... ...+ |.-+-++..|.+||||.|.+...|..+....++-+|
T Consensus 56 kLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LK-nsGi-P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLK-NSGI-PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccc-cCCC-CchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 45566665554432 3466778889999888643322 2233 334557999999999999999999999999999999
Q ss_pred cccCCccccccCcccc-CCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccccc-ccccCCCCCCCeEEeecCC-
Q 038265 589 DLSGNRKIKKLPNSIC-ELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMISDCG- 665 (883)
Q Consensus 589 ~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~- 665 (883)
+||+|+ +..+|..++ +++.|-+||||+ +.+..+|..+..|.+|+.|.|++|.+... -..+..+++|+.|.+++.+
T Consensus 132 NLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 132 NLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 999886 889998765 899999999997 57889999999999999999999988732 1345677889999998854
Q ss_pred CccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEec
Q 038265 666 NLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVA 745 (883)
Q Consensus 666 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 745 (883)
-+..+|.++..+.+|+.++++.| .+..+|..+.++++|+.|+|++|....+... ...-.+|+.|+++
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~------------~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMT------------EGEWENLETLNLS 276 (1255)
T ss_pred hhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeecc------------HHHHhhhhhhccc
Confidence 45678999999999999999875 4778899999999999999999875543321 1112267777777
Q ss_pred cCCCCccchhhhhcCCCCCccEEeecCCCC-CccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcch
Q 038265 746 ELTQLLELPQWLLQGSSKTLQMLTIGDCPN-FMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPAL 824 (883)
Q Consensus 746 ~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~-l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 824 (883)
.+ .++.+|..+ ..+++|+.|.+.+|.. ...+|++++.+.+|+.+..++|. ++.+|+++..|+.|+.|.++.|..+
T Consensus 277 rN-QLt~LP~av--cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 277 RN-QLTVLPDAV--CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cc-hhccchHHH--hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee
Confidence 75 677777776 6677777777776653 24567777777777777766644 6666666666666666666665443
Q ss_pred hhhhCCCCCCCCCccCCCCeeeeCCCc
Q 038265 825 CERCKPLTGEDWPKIAHIPQIDLDGEM 851 (883)
Q Consensus 825 ~~~~~~~~~~~~~~~~~l~~l~l~~n~ 851 (883)
+- .+...-+..|..|++..|+
T Consensus 353 TL------PeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 353 TL------PEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ec------hhhhhhcCCcceeeccCCc
Confidence 21 1112334455555555554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.1e-21 Score=205.74 Aligned_cols=285 Identities=17% Similarity=0.142 Sum_probs=148.8
Q ss_pred HhhccCCcccEEEecCccccccccc-cCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcc
Q 038265 554 SCISKSKSLRVLVLMNSAIEVLPRK-MGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVS 632 (883)
Q Consensus 554 ~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 632 (883)
..++-++.||.||||.|.+..+|.. +..-.++++|+|++|.+...--..|..+.+|.+|.|++|....--+..|.+|++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 3455566677777777777666543 444456777777776644333445666667777777765444333345566777
Q ss_pred cCEEEeCCcccccc-ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEecc
Q 038265 633 LRMFVVTTKQKSLL-ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLK 711 (883)
Q Consensus 633 L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~ 711 (883)
|+.|+|..|.+... ...|.++++|+.|.+..|+..+---..|-.+.++++|+|..|+....-..++.++..|+.|++++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 77777777766643 33466666666666666543332223445566666666666554444445566666666666666
Q ss_pred CCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccc
Q 038265 712 CESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALEN 791 (883)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 791 (883)
|..-... .+.|..+.+|+.|+|+++ .++.++...+ ..+..|++|.|+.|.....-...+..+++|++
T Consensus 303 NaI~rih-----------~d~WsftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 303 NAIQRIH-----------IDSWSFTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred hhhheee-----------cchhhhcccceeEecccc-ccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 5432211 122444456666666664 4445544332 33445555555554322211223444555555
Q ss_pred cccccccccccC---CCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchh
Q 038265 792 LLITSCPKLSSL---PEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSD 856 (883)
Q Consensus 792 L~L~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 856 (883)
|+|++|.....+ ...+..+++|+.|.+.||. ........+..+..+.+|++.+|.|..+.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-----lk~I~krAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-----LKSIPKRAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCce-----eeecchhhhccCcccceecCCCCcceeec
Confidence 555555432222 1223445555555555542 11122223444455555555555554444
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.1e-19 Score=225.87 Aligned_cols=286 Identities=24% Similarity=0.375 Sum_probs=181.4
Q ss_pred hHHhhccCCcccEEEecCccc-------cccccccCCCC-CceEecccCCccccccCccccCCCcccEeecCCCCCCccC
Q 038265 552 VTSCISKSKSLRVLVLMNSAI-------EVLPRKMGNLR-QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEEL 623 (883)
Q Consensus 552 ~~~~~~~~~~L~~L~l~~~~~-------~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 623 (883)
....|.+|++|+.|.+.++.. ..+|..+..++ +|+.|++.++. +..+|..+ .+.+|+.|++++| .+..+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s-~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGS-KLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCc-ccccc
Confidence 345577788888887765432 13555555543 47777777654 56666655 4567777777664 35556
Q ss_pred CccccCCcccCEEEeCCcc-ccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCC
Q 038265 624 PKDIRYLVSLRMFVVTTKQ-KSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLS 702 (883)
Q Consensus 624 p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~ 702 (883)
|.++..+++|+.|+++++. +..+| .++.+++|++|++++|..+..+|..++++++|+.|++++|..++.+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 6666677777777776553 33333 46666777777777777666777777777777777777776666666654 566
Q ss_pred CccEEEeccCCCCccCCccc-------------cccccC--------C------------------CCCCCCCCCcceEE
Q 038265 703 SLETLILLKCESLDLNLNME-------------MEEEGS--------H------------------HDCNNVRSHLRTLC 743 (883)
Q Consensus 703 ~L~~L~L~~~~~l~~~~~~~-------------~~~~~~--------~------------------~~~~~~~~~L~~L~ 743 (883)
+|+.|++++|..+....... ...... . ......+.+|+.|+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 67777776665432211000 000000 0 00001124788888
Q ss_pred eccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccC--------------------
Q 038265 744 VAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSL-------------------- 803 (883)
Q Consensus 744 l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~l-------------------- 803 (883)
+++|+.+..+|..+ ..+++|+.|+|++|..++.+|..+ ++++|+.|+|++|..+..+
T Consensus 785 Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i 861 (1153)
T PLN03210 785 LSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV 861 (1153)
T ss_pred CCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence 88888888888887 788899999999988888888765 6788888888887665544
Q ss_pred CCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCC
Q 038265 804 PEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGE 850 (883)
Q Consensus 804 p~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n 850 (883)
|..+..+++|+.|++++|+++..... ....+++|+.+++.++
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~l~~-----~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQRVSL-----NISKLKHLETVDFSDC 903 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCccCc-----ccccccCCCeeecCCC
Confidence 44456678889999999888765332 1234455555555443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.1e-21 Score=202.41 Aligned_cols=282 Identities=19% Similarity=0.148 Sum_probs=164.6
Q ss_pred CCcccEEEecCccccccc-cccCCCCCceEecccCCccccccCc-cccCCCcccEeecCCCCCCccCCccccCCcccCEE
Q 038265 559 SKSLRVLVLMNSAIEVLP-RKMGNLRQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 636 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 636 (883)
..+|+.|+|.+|.|.++. +.+..++.|+.||||.|. +..+|. ++..-.++++|+|++|.+...--..|..+.+|..|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 344555555555554442 234445555555555543 333332 23333455555555544333333344555555555
Q ss_pred EeCCcccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCC
Q 038265 637 VVTTKQKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESL 715 (883)
Q Consensus 637 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l 715 (883)
.|+.|.++.+|. .|.++++|+.|+|..|..-..-...|..+++|+.|.|..|....--...|..|.++++|+|+.|...
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 555555554443 3334555555555554321111233455556666655555443333344556666666666665433
Q ss_pred ccCCccccccccCCCCCCCCCCCcceEEeccCCCCccc-hhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccccc
Q 038265 716 DLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLEL-PQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLI 794 (883)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 794 (883)
.+... .......|+.|+++.+. +..+ +..+ ..+++|+.|+|++|....--+..+..+..|++|+|
T Consensus 283 ~vn~g-----------~lfgLt~L~~L~lS~Na-I~rih~d~W--sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 283 AVNEG-----------WLFGLTSLEQLDLSYNA-IQRIHIDSW--SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred hhhcc-----------cccccchhhhhccchhh-hheeecchh--hhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 22211 12344578888888863 3332 2222 46789999999998755555667888999999999
Q ss_pred ccccccccCCC-CCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhhh
Q 038265 795 TSCPKLSSLPE-GMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 795 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~ 858 (883)
++|. +..+.+ .+..+++|+.|||+.|.. .. |-......|..+..++.|.+.||.++.+...
T Consensus 349 s~Ns-i~~l~e~af~~lssL~~LdLr~N~l-s~-~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 349 SHNS-IDHLAEGAFVGLSSLHKLDLRSNEL-SW-CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred cccc-hHHHHhhHHHHhhhhhhhcCcCCeE-EE-EEecchhhhccchhhhheeecCceeeecchh
Confidence 9987 444443 467789999999999863 22 2233556688899999999999999998864
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=7.6e-22 Score=207.92 Aligned_cols=278 Identities=20% Similarity=0.304 Sum_probs=167.7
Q ss_pred hccCCcccEEEecCcccc--ccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCcc-ccCCcc
Q 038265 556 ISKSKSLRVLVLMNSAIE--VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKD-IRYLVS 632 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~ 632 (883)
++.++.||.+++..|+++ .+|..+..+..|..||||+|+ +.+.|..+...+++-+|+||+| .+..+|.. +.+|+.
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTD 151 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHh
Confidence 444555555555555553 455555566666666666654 5556665666666666666653 44455543 345666
Q ss_pred cCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccC-CCCCcccCCCCCCccEEEecc
Q 038265 633 LRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPR-LISLPPAMKYLSSLETLILLK 711 (883)
Q Consensus 633 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~l~~~l~~l~~L~~L~L~~ 711 (883)
|-+|+|++|.+..+|+.+..+.+|++|+|++|.....-...+..+++|+.|.+++.+. +..+|.++..+.+|..++++.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 6666666666666666666666666666666543222222333455555556655443 235666666666666666665
Q ss_pred CCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccc
Q 038265 712 CESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALEN 791 (883)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 791 (883)
|+.- ..+.|.....+|+.|+|+++ .++++.... +...+|++|++|.|. ++.+|..+..++.|+.
T Consensus 232 N~Lp------------~vPecly~l~~LrrLNLS~N-~iteL~~~~--~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 232 NNLP------------IVPECLYKLRNLRRLNLSGN-KITELNMTE--GEWENLETLNLSRNQ-LTVLPDAVCKLTKLTK 295 (1255)
T ss_pred cCCC------------cchHHHhhhhhhheeccCcC-ceeeeeccH--HHHhhhhhhccccch-hccchHHHhhhHHHHH
Confidence 4321 12334444557778888875 566655444 445678888888874 6778888888888888
Q ss_pred cccccccc-cccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 792 LLITSCPK-LSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 792 L~L~~c~~-l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
|.+.+|.. .+-+|.+++.+.+|+.+...+|.. . ...+.......++.|.++.|.+-.+..
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-E-----lVPEglcRC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-E-----LVPEGLCRCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhcccc-c-----cCchhhhhhHHHHHhcccccceeechh
Confidence 88888775 346888888888888888877631 1 111112233456777888887666553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=4.3e-20 Score=185.72 Aligned_cols=246 Identities=32% Similarity=0.366 Sum_probs=186.6
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
+.++..|.+|+++.|.+..+|..++.+..++.|++++|+ +.++|..++.+.+|..|+++.| ...++|++++.+..|..
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLED 141 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhh
Confidence 556777888888888888888888888888888888775 6777877888888888888773 56677778888888888
Q ss_pred EEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCC
Q 038265 636 FVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESL 715 (883)
Q Consensus 636 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l 715 (883)
|+..+|++...|.++..+.+|..|++.+|.. ..+|+..-+++.|++|+... +.++.+|+.++.+.+|+.|++..|...
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccc
Confidence 8888888888887888888888888877543 44555555578888887755 346778888888888888888777654
Q ss_pred ccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccc
Q 038265 716 DLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLIT 795 (883)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~ 795 (883)
.++. ...|..|+.|+++.+ .++.+|.... ..+++|..||+.+| .+++.|+.+.-+.+|+.|+++
T Consensus 220 ~lPe-------------f~gcs~L~Elh~g~N-~i~~lpae~~-~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 220 FLPE-------------FPGCSLLKELHVGEN-QIEMLPAEHL-KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred cCCC-------------CCccHHHHHHHhccc-HHHhhHHHHh-cccccceeeecccc-ccccCchHHHHhhhhhhhccc
Confidence 4332 334556777777764 6777777663 57788889999887 478888888888889999998
Q ss_pred cccccccCCCCCCCCCCcCeeeccCCcc
Q 038265 796 SCPKLSSLPEGMHHLTTLKTLAIEECPA 823 (883)
Q Consensus 796 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 823 (883)
+|. +..+|..++++ .|+.|-+.|||.
T Consensus 284 NN~-is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 284 NND-ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CCc-cccCCcccccc-eeeehhhcCCch
Confidence 876 67788888888 899999999885
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=6.2e-19 Score=177.46 Aligned_cols=274 Identities=24% Similarity=0.281 Sum_probs=191.2
Q ss_pred ccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCC
Q 038265 527 SFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICEL 606 (883)
Q Consensus 527 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 606 (883)
..|+.|+.|..+.+. .+.....+....+++++|.+||+..|.++++|..++-+.+|.+||+|+|. +..+|.+++++
T Consensus 222 Pef~gcs~L~Elh~g---~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl 297 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVG---ENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL 297 (565)
T ss_pred CCCCccHHHHHHHhc---ccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc
Confidence 466777777766554 23333334445568899999999999999999999989999999999776 78889889998
Q ss_pred CcccEeecCCCCCC-------------------------------------ccCC----ccccCCcccCEEEeCCccccc
Q 038265 607 QSLQTLNLGDCLEL-------------------------------------EELP----KDIRYLVSLRMFVVTTKQKSL 645 (883)
Q Consensus 607 ~~L~~L~L~~~~~~-------------------------------------~~lp----~~~~~l~~L~~L~l~~~~~~~ 645 (883)
+|+.|-+.||..- ...| .....+.+.+.|+++.-+++.
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~ 376 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL 376 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence 8888888876421 0011 122335567777777777777
Q ss_pred cccccCCCCC---CCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccc
Q 038265 646 LESGIGCLSS---LRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNME 722 (883)
Q Consensus 646 ~~~~~~~l~~---L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~ 722 (883)
+|..+..... ....+++.|. +..+|..+..++.+.+.-+..++...-.|..++.+++|..|++++|..-+++..
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-- 453 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-- 453 (565)
T ss_pred CCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh--
Confidence 7654433322 5667777754 456777777777777665556666777777788888888888887643322211
Q ss_pred cccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccC-CccCCCCccccccccccccccc
Q 038265 723 MEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMAL-PRSLKDLEALENLLITSCPKLS 801 (883)
Q Consensus 723 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~L~~c~~l~ 801 (883)
......|+.|+++.+ .+..+|... -....|+.+-.++|+ ++.+ |++++++.+|..|+|.+|. +.
T Consensus 454 ----------~~~lv~Lq~LnlS~N-rFr~lP~~~--y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~nNd-lq 518 (565)
T KOG0472|consen 454 ----------MGSLVRLQTLNLSFN-RFRMLPECL--YELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQNND-LQ 518 (565)
T ss_pred ----------hhhhhhhheeccccc-ccccchHHH--hhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCCCc-hh
Confidence 111225777788776 677788776 344556666666554 5555 4458899999999998876 77
Q ss_pred cCCCCCCCCCCcCeeeccCCcc
Q 038265 802 SLPEGMHHLTTLKTLAIEECPA 823 (883)
Q Consensus 802 ~lp~~l~~l~~L~~L~l~~c~~ 823 (883)
.+|..++++++|++|+++|||.
T Consensus 519 ~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hCChhhccccceeEEEecCCcc
Confidence 8899999999999999999973
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=8.4e-17 Score=178.76 Aligned_cols=208 Identities=25% Similarity=0.228 Sum_probs=122.0
Q ss_pred cCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccC
Q 038265 633 LRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 633 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~ 712 (883)
|++++++.|.+..+|.+++.+.+|+.|+..+|.. ..+|..+...++|+.|.+..|. +..+|.....+++|++|+|..|
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 3344444444444444555555555555544332 3344444444445555444432 4456666677888888888766
Q ss_pred CCCccCCcccc--------------------------------------ccccCCCCCCCCCCCcceEEeccCCCCccch
Q 038265 713 ESLDLNLNMEM--------------------------------------EEEGSHHDCNNVRSHLRTLCVAELTQLLELP 754 (883)
Q Consensus 713 ~~l~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 754 (883)
....+...... .......+......+|+.|+|+++ .+..+|
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fp 399 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFP 399 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCC
Confidence 54332210000 000000111122348888888886 677777
Q ss_pred hhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCC
Q 038265 755 QWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGE 834 (883)
Q Consensus 755 ~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~ 834 (883)
...+ ..+..|+.|+|||| .++.+|..+..++.|++|...+|. +..+| .+..++.|+.+|++.|. ++......
T Consensus 400 as~~-~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~--- 471 (1081)
T KOG0618|consen 400 ASKL-RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPE--- 471 (1081)
T ss_pred HHHH-hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccch-hhhhhhhh---
Confidence 7664 67788888999998 477888888888888888887765 66777 57788899999997664 32221111
Q ss_pred CCCccCCCCeeeeCCCcc
Q 038265 835 DWPKIAHIPQIDLDGEMI 852 (883)
Q Consensus 835 ~~~~~~~l~~l~l~~n~i 852 (883)
-..-+.|+.+++.||.-
T Consensus 472 -~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 472 -ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -hCCCcccceeeccCCcc
Confidence 11116778888888874
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=1.2e-14 Score=168.77 Aligned_cols=225 Identities=22% Similarity=0.328 Sum_probs=153.0
Q ss_pred CcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeC
Q 038265 560 KSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 639 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 639 (883)
++|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. ++|+.|+|++|. +..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECc
Confidence 467788888888888877654 478888888775 556776543 468888888765 446776553 478888888
Q ss_pred CccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCC
Q 038265 640 TKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNL 719 (883)
Q Consensus 640 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~ 719 (883)
+|.+..+|..+. ++|+.|++++|. ++.+|..+. ++|+.|++++|.. ..+|..+ .++|+.|++++|..-.+..
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSL-TALPETL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcc-ccCCccc--cccceeccccCCccccCCh
Confidence 888777665543 578888888764 445554432 4678888877654 3455543 3578888888775332111
Q ss_pred ccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccc
Q 038265 720 NMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPK 799 (883)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~ 799 (883)
..+.+|+.|++++| .+..+|..+ .++|+.|+|++|. +..+|..+. .+|+.|++++|..
T Consensus 343 --------------~l~~sL~~L~Ls~N-~L~~LP~~l----p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L 400 (754)
T PRK15370 343 --------------SLPPELQVLDVSKN-QITVLPETL----PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNL 400 (754)
T ss_pred --------------hhcCcccEEECCCC-CCCcCChhh----cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCc
Confidence 11247888888887 466677654 2689999999885 556776553 4789999999774
Q ss_pred cccCCCCC----CCCCCcCeeeccCCcc
Q 038265 800 LSSLPEGM----HHLTTLKTLAIEECPA 823 (883)
Q Consensus 800 l~~lp~~l----~~l~~L~~L~l~~c~~ 823 (883)
..+|..+ ..++++..|++.+||.
T Consensus 401 -~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 401 -VRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -ccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 4666544 3457888999999885
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=9.4e-17 Score=143.11 Aligned_cols=165 Identities=29% Similarity=0.445 Sum_probs=138.3
Q ss_pred CCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcc
Q 038265 530 PDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSL 609 (883)
Q Consensus 530 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 609 (883)
-+++++..|.++.+. ....+..+..+.+|++|++++|+++.+|.+++.+++|+.|++.-|. +..+|..|+.++.|
T Consensus 30 f~~s~ITrLtLSHNK----l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK----LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCc----eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchh
Confidence 345556666665322 2233445788999999999999999999999999999999999876 78899999999999
Q ss_pred cEeecCCCCCC-ccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccc
Q 038265 610 QTLNLGDCLEL-EELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSC 688 (883)
Q Consensus 610 ~~L~L~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (883)
+.|||+.|+.. ..+|..|..++.|+.|.++.|.+..+|..++++++||.|.+..|+.+ .+|..++.++.|+.|.+.+|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999987655 45899999999999999999999999999999999999999997655 58999999999999999986
Q ss_pred cCCCCCcccCCCC
Q 038265 689 PRLISLPPAMKYL 701 (883)
Q Consensus 689 ~~~~~l~~~l~~l 701 (883)
+ +..+|+.+.++
T Consensus 184 r-l~vlppel~~l 195 (264)
T KOG0617|consen 184 R-LTVLPPELANL 195 (264)
T ss_pred e-eeecChhhhhh
Confidence 5 56677665543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.3e-14 Score=168.50 Aligned_cols=252 Identities=19% Similarity=0.253 Sum_probs=186.6
Q ss_pred CcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeC
Q 038265 560 KSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 639 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 639 (883)
.+...|+++++.+..+|..+. .+|+.|++++|. +..+|..+. ++|++|++++|. +..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 467899999999999998764 589999999986 678888664 699999999865 567887653 589999999
Q ss_pred CccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCC
Q 038265 640 TKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNL 719 (883)
Q Consensus 640 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~ 719 (883)
+|.+..+|..+. ++|+.|++++| .+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|....+..
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCc
Confidence 999998886654 58999999975 5567776553 589999999975 456776442 478999999875432211
Q ss_pred ccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccc
Q 038265 720 NMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPK 799 (883)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~ 799 (883)
....+|+.|++++| .++.+|..+ .++|+.|++++|+ +..+|..+. ++|+.|+|++|.
T Consensus 322 --------------~l~~sL~~L~Ls~N-~Lt~LP~~l----~~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~- 378 (754)
T PRK15370 322 --------------TLPPGLKTLEAGEN-ALTSLPASL----PPELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNA- 378 (754)
T ss_pred --------------cccccceeccccCC-ccccCChhh----cCcccEEECCCCC-CCcCChhhc--CCcCEEECCCCc-
Confidence 12247999999997 577788755 3799999999986 566777553 789999999987
Q ss_pred cccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccc
Q 038265 800 LSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKS 854 (883)
Q Consensus 800 l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 854 (883)
+..+|..+. ++|+.|++++|.. ...... .........++..+++.+|.+..
T Consensus 379 Lt~LP~~l~--~sL~~LdLs~N~L-~~LP~s-l~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 379 LTNLPENLP--AALQIMQASRNNL-VRLPES-LPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCCCCHhHH--HHHHHHhhccCCc-ccCchh-HHHHhhcCCCccEEEeeCCCccH
Confidence 557787553 4799999999853 111100 00011223567789999999864
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=5.3e-14 Score=162.17 Aligned_cols=217 Identities=26% Similarity=0.252 Sum_probs=148.6
Q ss_pred CCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEe
Q 038265 559 SKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 638 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 638 (883)
.++|++|++++|.++.+|.. .++|+.|++++|. +..+|.. ..+|+.|++++| .+..+|.. +++|+.|++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeEC
Confidence 46788888888888888753 3578888888876 5566653 256778888876 44566653 467888888
Q ss_pred CCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccC
Q 038265 639 TTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLN 718 (883)
Q Consensus 639 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~ 718 (883)
++|.+..+|.. ..+|+.|++++|.. +.+|. ...+|+.|+|++|. +..+|.. .++|+.|++++|..-.+.
T Consensus 310 S~N~L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~---lp~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP 378 (788)
T PRK15387 310 SDNQLASLPAL---PSELCKLWAYNNQL-TSLPT---LPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLP 378 (788)
T ss_pred CCCccccCCCC---cccccccccccCcc-ccccc---cccccceEecCCCc-cCCCCCC---CcccceehhhccccccCc
Confidence 88888776642 24577778877543 44553 12478888888765 4456653 346777777766432211
Q ss_pred CccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccccccccc
Q 038265 719 LNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCP 798 (883)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~ 798 (883)
....+|+.|++++| .+..+|.. .++|+.|++++|. +..+|.. ..+|+.|++++|.
T Consensus 379 ---------------~l~~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 379 ---------------ALPSGLKELIVSGN-RLTSLPVL-----PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQ 433 (788)
T ss_pred ---------------ccccccceEEecCC-cccCCCCc-----ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCc
Confidence 11236888888876 46666643 2678889998886 5567753 3568888888877
Q ss_pred ccccCCCCCCCCCCcCeeeccCCcc
Q 038265 799 KLSSLPEGMHHLTTLKTLAIEECPA 823 (883)
Q Consensus 799 ~l~~lp~~l~~l~~L~~L~l~~c~~ 823 (883)
+..+|..+.++++|+.|++++||.
T Consensus 434 -Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 434 -LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -ccccChHHhhccCCCeEECCCCCC
Confidence 567888888888999999988874
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=7.2e-14 Score=161.11 Aligned_cols=242 Identities=24% Similarity=0.257 Sum_probs=162.4
Q ss_pred CcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeC
Q 038265 560 KSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 639 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 639 (883)
++|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|+.|++++|. +..+|.. ..+|+.|+++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIF 290 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECc
Confidence 3677788888888777753 4677888888775 5566642 3577788887754 4455542 2567778888
Q ss_pred CccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCC
Q 038265 640 TKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNL 719 (883)
Q Consensus 640 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~ 719 (883)
+|.+..+|. .+++|+.|++++|. +..+|.. ..+|+.|++++|.. ..+|.. ..+|+.|+|++|..-.++
T Consensus 291 ~N~Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~Ls~LP- 358 (788)
T PRK15387 291 GNQLTSLPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQLASLP- 358 (788)
T ss_pred CCccccccc---cccccceeECCCCc-cccCCCC---cccccccccccCcc-cccccc---ccccceEecCCCccCCCC-
Confidence 888776664 34678888888764 4445542 24577777877653 455542 247888888887533221
Q ss_pred ccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccc
Q 038265 720 NMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPK 799 (883)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~ 799 (883)
....+|+.|++++| .+..+|... .+|+.|++++|. +..+|.. .++|+.|++++|.
T Consensus 359 --------------~lp~~L~~L~Ls~N-~L~~LP~l~-----~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~- 413 (788)
T PRK15387 359 --------------TLPSELYKLWAYNN-RLTSLPALP-----SGLKELIVSGNR-LTSLPVL---PSELKELMVSGNR- 413 (788)
T ss_pred --------------CCCcccceehhhcc-ccccCcccc-----cccceEEecCCc-ccCCCCc---ccCCCEEEccCCc-
Confidence 12246778888775 566677532 579999999885 5567753 3679999999987
Q ss_pred cccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhhh
Q 038265 800 LSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 800 l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~ 858 (883)
+..+|.. +.+|+.|++++|.. +.. ...+..+.++..+++++|.+......
T Consensus 414 LssIP~l---~~~L~~L~Ls~NqL-t~L-----P~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 414 LTSLPML---PSGLLSLSVYRNQL-TRL-----PESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCCCcc---hhhhhhhhhccCcc-ccc-----ChHHhhccCCCeEECCCCCCCchHHH
Confidence 5567753 35788899988753 211 22355678899999999999865544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=6.9e-16 Score=171.59 Aligned_cols=108 Identities=30% Similarity=0.388 Sum_probs=95.3
Q ss_pred hhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccC
Q 038265 555 CISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 634 (883)
Q Consensus 555 ~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 634 (883)
+..+.-+|+.|++++|.+..+|..+..+.+|+.|+++.| .+...|.+.+++.+|++|+|.+ +.+..+|.++..+++|+
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQ 117 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccc
Confidence 344455599999999999999999999999999999976 5899999999999999999985 78899999999999999
Q ss_pred EEEeCCccccccccccCCCCCCCeEEeecC
Q 038265 635 MFVVTTKQKSLLESGIGCLSSLRFLMISDC 664 (883)
Q Consensus 635 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 664 (883)
+|++++|.+...|..+..++.+..+..++|
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 999999999988888888888887777776
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=1.6e-15 Score=164.14 Aligned_cols=160 Identities=21% Similarity=0.137 Sum_probs=93.5
Q ss_pred HhhccCCcccEEEecCcccc-----ccccccCCCCCceEecccCCccc------cccCccccCCCcccEeecCCCCCCcc
Q 038265 554 SCISKSKSLRVLVLMNSAIE-----VLPRKMGNLRQLRHLDLSGNRKI------KKLPNSICELQSLQTLNLGDCLELEE 622 (883)
Q Consensus 554 ~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~------~~lp~~~~~l~~L~~L~L~~~~~~~~ 622 (883)
..+..+.+|++|+++++.+. .++..+...++|++|+++++... ..++..+.++++|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34455566778888777763 35555666677777777776532 12334456677788888877766555
Q ss_pred CCccccCCcc---cCEEEeCCccccc-----cccccCCC-CCCCeEEeecCCCcc----ccccccccCcccceeeecccc
Q 038265 623 LPKDIRYLVS---LRMFVVTTKQKSL-----LESGIGCL-SSLRFLMISDCGNLE----YLFEDIDQLSVLRSLVINSCP 689 (883)
Q Consensus 623 lp~~~~~l~~---L~~L~l~~~~~~~-----~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~ 689 (883)
.+..+..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.... .++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 5544444444 7777777766551 12234445 677777777765431 233344555667777776665
Q ss_pred CCC----CCcccCCCCCCccEEEeccCC
Q 038265 690 RLI----SLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 690 ~~~----~l~~~l~~l~~L~~L~L~~~~ 713 (883)
... .++..+..+++|+.|++++|.
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 432 223334445566666666653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.7e-15 Score=135.19 Aligned_cols=152 Identities=28% Similarity=0.440 Sum_probs=122.8
Q ss_pred cCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEE
Q 038265 558 KSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 637 (883)
Q Consensus 558 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 637 (883)
.+.++..|.||.|.+..+|..+..+.+|+.|++++|+ ++++|.+++.+++|+.|+++- +.+..+|.+|+.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence 4567778888888888888888888888999888776 788888888888888888876 46677888888888888888
Q ss_pred eCCcccc--ccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 638 VTTKQKS--LLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 638 l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
+++|++. .+|..|..++.|+-|++++| ..+.+|..++++++|+.|.+..|. +-++|..++.+..|+.|.+.+|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce
Confidence 8888776 56777777888888888874 457788888888888888887755 45678888888888888887753
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=1.3e-14 Score=156.84 Aligned_cols=189 Identities=22% Similarity=0.175 Sum_probs=134.9
Q ss_pred ccccCCCCCceeEEeeccCCccc-hhhhhHHhhccCCcccEEEecCccccc-------cccccCCCCCceEecccCCccc
Q 038265 525 FASFLPDLGRVRTIMLPIDDERT-SQSFVTSCISKSKSLRVLVLMNSAIEV-------LPRKMGNLRQLRHLDLSGNRKI 596 (883)
Q Consensus 525 ~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-------lp~~~~~l~~L~~L~l~~~~~~ 596 (883)
....++.+..++.+.+..+.... ....+...+...++|+.|+++++.+.. ++..+..+++|++|++++|...
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 34455566778888887444321 223345567778889999999887663 3445677889999999998866
Q ss_pred cccCccccCCCc---ccEeecCCCCCCc----cCCccccCC-cccCEEEeCCcccc-----ccccccCCCCCCCeEEeec
Q 038265 597 KKLPNSICELQS---LQTLNLGDCLELE----ELPKDIRYL-VSLRMFVVTTKQKS-----LLESGIGCLSSLRFLMISD 663 (883)
Q Consensus 597 ~~lp~~~~~l~~---L~~L~L~~~~~~~----~lp~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~ 663 (883)
...+..+..+.+ |++|++++|...+ .+...+..+ ++|+.|++++|.+. .++..+..+++|++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 556655555555 9999999987652 233455667 89999999999887 2334566778999999999
Q ss_pred CCCcc----ccccccccCcccceeeeccccCCC----CCcccCCCCCCccEEEeccCC
Q 038265 664 CGNLE----YLFEDIDQLSVLRSLVINSCPRLI----SLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 664 ~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~L~L~~~~ 713 (883)
|.... .++..+..+++|+.|++++|.... .++..+..+++|+.|++++|.
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 86542 234455667899999999987532 344556778889999998874
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=7.2e-14 Score=141.31 Aligned_cols=126 Identities=25% Similarity=0.353 Sum_probs=66.4
Q ss_pred cEEEecCccccccccc-cCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCcc-ccCCcccCEEEeCC
Q 038265 563 RVLVLMNSAIEVLPRK-MGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKD-IRYLVSLRMFVVTT 640 (883)
Q Consensus 563 ~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~ 640 (883)
..++|..|.|+.+|+. |+.+++||.||||+|.+...-|+.|..+++|-.|-+-+++.+..+|+. |+.|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 3455555666655543 555666666666665544455555656665555555554555555542 45555566555555
Q ss_pred cccc-ccccccCCCCCCCeEEeecCCCcccccc-ccccCcccceeeecccc
Q 038265 641 KQKS-LLESGIGCLSSLRFLMISDCGNLEYLFE-DIDQLSVLRSLVINSCP 689 (883)
Q Consensus 641 ~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 689 (883)
|.+. .....+..+++|..|.+.+|. +..++. .+..+..++.+.+.-|.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 5554 222345555555555555533 223332 44555555555554443
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=3.4e-10 Score=140.63 Aligned_cols=286 Identities=13% Similarity=0.121 Sum_probs=171.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC----------CCCcHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ----------KDFGKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----------~~~~~~~~~~~i~~~~~ 232 (883)
...+|-|.. |.+.|... ...+++.|+|++|.||||++..+.... ..-++..++..++..+.
T Consensus 13 ~~~~~~R~r----l~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRER----LLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchH----HHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 456777765 44444321 457899999999999999999987543 22245566666666652
Q ss_pred CCCC-------------CCCChHHHHHHHHHHcC--CCceEEEEeCCCCCChhhHH-HHHHhcCCCCCCCEEEEeecChH
Q 038265 233 GGNH-------------GNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNEDPRAWG-ELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 233 ~~~~-------------~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
.... ...+.......+...+. +++++|||||+...+..... .+...+....++.++|||||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 1100 00122223333333333 68899999999776543433 34444444456778999999842
Q ss_pred HHH--HHcccCCCCceecC----CCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCH
Q 038265 297 VAL--IMGTMRGTTGYNLQ----ELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDE 370 (883)
Q Consensus 297 v~~--~~~~~~~~~~~~l~----~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~ 370 (883)
... ..... ....++. +|+.+|+.++|..... .... .+...+|.+.|+|.|+++..++..+......
T Consensus 164 ~~~~~~l~~~--~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 164 PLGIANLRVR--DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIE---AAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCchHhHHhc--CcceecCHHhCCCCHHHHHHHHHhccC---CCCC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 111 11111 1345555 9999999999987652 1112 2456789999999999999998877543211
Q ss_pred HHHHHHHccccccccC-CCCCcchHHHHh-hcCCChhhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCCCchHHH
Q 038265 371 HDWEHVRDNDIWKLRQ-APDDILPALRLS-YDQLPPHLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEELEK 448 (883)
Q Consensus 371 ~~w~~~~~~~~~~~~~-~~~~i~~~l~~s-y~~L~~~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~~~~ 448 (883)
... . .+.+.. ....+...+.-. |+.||+..+..++..|+++ .++.. +. ..+... +
T Consensus 236 ~~~--~----~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~-----~~l~~~--------~ 292 (903)
T PRK04841 236 LHD--S----ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LI-----VRVTGE--------E 292 (903)
T ss_pred hhh--h----hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HH-----HHHcCC--------C
Confidence 000 0 011111 123455554443 8999999999999999986 33432 22 112111 1
Q ss_pred HHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHHHHHHHh
Q 038265 449 IGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHDLALLVA 492 (883)
Q Consensus 449 ~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~dla~~i~ 492 (883)
.+...+++|.+.+++....... ...| +.|++++++.....
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~~~--~~~y--r~H~L~r~~l~~~l 332 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMDDS--GEWF--RYHPLFASFLRHRC 332 (903)
T ss_pred cHHHHHHHHHHCCCeeEeecCC--CCEE--ehhHHHHHHHHHHH
Confidence 2456789999999965322111 2356 68999999887654
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=2.8e-13 Score=137.13 Aligned_cols=242 Identities=21% Similarity=0.179 Sum_probs=162.5
Q ss_pred ccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCCceEecccCCccccccCc-cccCCCcccEeecCCCCCCcc
Q 038265 545 ERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCLELEE 622 (883)
Q Consensus 545 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~ 622 (883)
.+....+++..|+.+++||.|||++|.|+.+ |..|..+..|..|-+-+|..++.+|. .|++|..|+-|.+.-|.....
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 3456677788899999999999999999877 67788899888887777556888885 477899999999988776666
Q ss_pred CCccccCCcccCEEEeCCcccccccc-ccCCCCCCCeEEeecCCCc------------cccccccccCcc----------
Q 038265 623 LPKDIRYLVSLRMFVVTTKQKSLLES-GIGCLSSLRFLMISDCGNL------------EYLFEDIDQLSV---------- 679 (883)
Q Consensus 623 lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~------------~~~~~~l~~l~~---------- 679 (883)
....+..+++|..|.+..|.+..++. .+..+.+++++.+..|... ...|..++....
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 67788999999999999998887765 6788888888887665421 111222222211
Q ss_pred ------------ccee---eeccccCCCCCc-ccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEE
Q 038265 680 ------------LRSL---VINSCPRLISLP-PAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLC 743 (883)
Q Consensus 680 ------------L~~L---~l~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 743 (883)
++.+ -.+.|......| ..|..+++|+.|+|++|..-.+....+ .....++.|.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF-----------e~~a~l~eL~ 304 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF-----------EGAAELQELY 304 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh-----------cchhhhhhhh
Confidence 1111 111222222223 236677788888887765433322111 1223566666
Q ss_pred eccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccc
Q 038265 744 VAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPK 799 (883)
Q Consensus 744 l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~ 799 (883)
|..+ .+..+...++ ..+..|+.|+|.+|+....-|..|..+.+|.+|+|-.|+.
T Consensus 305 L~~N-~l~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRN-KLEFVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcc-hHHHHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 6664 5555555554 5567777777777776666677777777777777776664
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=5.6e-09 Score=109.59 Aligned_cols=172 Identities=20% Similarity=0.195 Sum_probs=110.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC------------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHH----H-cC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK------------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRD----S-LN 253 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~----~-l~ 253 (883)
..++.|+|++|+||||+++.+++... ..+..+++..+...+... ....+.......+.+ . ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~-~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLE-TEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCC-CCCCCHHHHHHHHHHHHHHHHhC
Confidence 45899999999999999999988642 235566676776665322 222222223333332 2 26
Q ss_pred CCceEEEEeCCCCCChhhHHHHHHhcCCC---CCCCEEEEeecChHHHHHHcc-------cCCCCceecCCCChhcHHHH
Q 038265 254 GKRYLLVMDDVWNEDPRAWGELKSLLLGG---AEGSKILVTTRSNKVALIMGT-------MRGTTGYNLQELPYKDCLSL 323 (883)
Q Consensus 254 ~kr~LlvlDdv~~~~~~~~~~l~~~l~~~---~~gs~iivTtr~~~v~~~~~~-------~~~~~~~~l~~L~~~~a~~l 323 (883)
+++.++|+||+|..+...++.+....... .....|++|.... ....... ......+++++++.+|..++
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 78899999999987766677665432211 2223455665432 2211110 00124678999999999999
Q ss_pred HHHHHhcCCCCCC-cchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 324 FMKCAFKEGKEKH-PNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 324 f~~~a~~~~~~~~-~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
+...+...+.... .-..+..+.|++.++|.|..|..++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9887754332212 2234678999999999999999998876
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.08 E-value=2.1e-08 Score=111.59 Aligned_cols=289 Identities=14% Similarity=0.109 Sum_probs=163.6
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---------------CCCcHHHHHH
Q 038265 161 VRTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---------------KDFGKRQIMT 225 (883)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---------------~~~~~~~~~~ 225 (883)
..++.++||++++++|...+..... +.....+.|+|++|+|||++++.++++. ...+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3467899999999999998854321 1334567899999999999999998753 1224457778
Q ss_pred HHHHHhhCCC--CCCCChHHHHHHHHHHcC--CCceEEEEeCCCCCC----hhhHHHHHHhcCCCCCCCE--EEEeecCh
Q 038265 226 KIINSVIGGN--HGNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNED----PRAWGELKSLLLGGAEGSK--ILVTTRSN 295 (883)
Q Consensus 226 ~i~~~~~~~~--~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtr~~ 295 (883)
.++.++.+.. ....+.++....+.+.+. +++.+||||+++... ......+...+.. .++++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 8888775422 223355666777777765 456899999997532 1223333332222 22333 56666654
Q ss_pred HHHHHHc----ccCCCCceecCCCChhcHHHHHHHHHhcCC--CCCCcc-hHHHHHHHHHHhCCCchHHHHHHhhh--c-
Q 038265 296 KVALIMG----TMRGTTGYNLQELPYKDCLSLFMKCAFKEG--KEKHPN-LVKIGEKIMEKCRGIPLAVRTVGSLL--Y- 365 (883)
Q Consensus 296 ~v~~~~~----~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~--~~~~~~-~~~~~~~i~~~c~glPLai~~~~~~L--~- 365 (883)
.+..... ..-....+.+++++.++..+++..++.... ....++ +..+++......|..+.|+.++-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4332211 111124678999999999999988763221 111222 22223333233455777777664322 1
Q ss_pred --CC--CCHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhhhHHhhhhccCCC--CcccchhHHHHH--HHHhcCC
Q 038265 366 --GS--TDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPK--DYKFASVHLVQF--WMAQGLL 437 (883)
Q Consensus 366 --~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~--~~~~~~~~Li~~--w~a~gli 437 (883)
+. -+.++...+.+.. -.....-.+..||.+.|..+..++...+ ...+...++... .+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 1333443333221 0123445688999998887766553321 123444444321 2222221
Q ss_pred cCCCCCchHHHHHHHHHHHHHhCCCceec
Q 038265 438 QSPNENEELEKIGMRYFKELCSRSFFQDL 466 (883)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 466 (883)
... ........++..|...+++...
T Consensus 334 ~~~----~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YEP----RTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCc----CcHHHHHHHHHHHHhcCCeEEE
Confidence 111 0123356789999999998754
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=3.8e-09 Score=112.92 Aligned_cols=263 Identities=16% Similarity=0.140 Sum_probs=137.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-CcHHHHHHHHHHHhhCCCCCCCChH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-FGKRQIMTKIINSVIGGNHGNLDPD 242 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (883)
.+|||+++.++++..++..... .......+.++|++|+|||+||+.+.+.... +... .+. ......
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~----------~~~--~~~~~~ 70 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKIT----------SGP--ALEKPG 70 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEe----------ccc--hhcCch
Confidence 4699999999999888854221 1133456889999999999999999876521 1000 000 000111
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcC-------------------CCCCCCEEEEeecChHHHHHHcc
Q 038265 243 RMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLL-------------------GGAEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 243 ~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~-------------------~~~~gs~iivTtr~~~v~~~~~~ 303 (883)
.+...+.. + +...++++|++........+.+...+. ...+.+-|..||+...+......
T Consensus 71 ~l~~~l~~-~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 71 DLAAILTN-L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred hHHHHHHh-c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh
Confidence 11111111 1 233455666654322211111211110 11224555667775433322111
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCHHHHHHHHcccccc
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDWEHVRDNDIWK 383 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~~~~ 383 (883)
.....+.+++++.++..+++.+.+...+...+ .+....|++.|+|.|-.+..++..+. ..........
T Consensus 149 -R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~~~~~~~ 216 (305)
T TIGR00635 149 -RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVR--------DFAQVRGQKI 216 (305)
T ss_pred -hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHH--------HHHHHcCCCC
Confidence 01246799999999999999988854332222 35568899999999977665555431 1110000000
Q ss_pred c-cCCCCCcchHHHHhhcCCChhhhHHhh-hhccCCCCcccchhHHHHHHHHhcCCcCCCCCchHHHHHHHHHH-HHHhC
Q 038265 384 L-RQAPDDILPALRLSYDQLPPHLKQCFA-YCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEELEKIGMRYFK-ELCSR 460 (883)
Q Consensus 384 ~-~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~~~~~~~~~l~-~L~~~ 460 (883)
. ..........+...|..++++.+..+. .++.+..+ .+....+... +... ...+...++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~------lg~~------~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAA------LGED------ADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHH------hCCC------cchHHHhhhHHHHHc
Confidence 0 000011122245568888888887666 44556433 4444333221 1111 123455577 69999
Q ss_pred CCceec
Q 038265 461 SFFQDL 466 (883)
Q Consensus 461 ~ll~~~ 466 (883)
+++...
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999643
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.03 E-value=4.9e-09 Score=112.74 Aligned_cols=266 Identities=17% Similarity=0.169 Sum_probs=140.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPD 242 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (883)
-.+|+|+++.++.+..++..... .......+.++|++|+|||++|+.+.+.....- ....+. ......
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~---------~~~~~~--~~~~~~ 91 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGVNI---------RITSGP--ALEKPG 91 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe---------EEEecc--cccChH
Confidence 46799999999998887754211 123355788999999999999999988752100 000000 000111
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCC-------------------CCCCCEEEEeecChHHHHHHcc
Q 038265 243 RMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG-------------------GAEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 243 ~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~iivTtr~~~v~~~~~~ 303 (883)
.+...+. .+ ++.-+|++|+++.......+.+...+.. ..+.+-|..|++...+......
T Consensus 92 ~l~~~l~-~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 92 DLAAILT-NL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHHHHHH-hc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH
Confidence 1112111 12 2345667777754332111212111110 0124455667664433222111
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCHHHHHHHHcccccc
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDWEHVRDNDIWK 383 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~~~~ 383 (883)
.....+++++++.++..+++.+.+...+.... .+....|++.|+|.|-.+..+...+. .|........ -
T Consensus 170 -Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~-I 238 (328)
T PRK00080 170 -RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGV-I 238 (328)
T ss_pred -hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCC-C
Confidence 01146899999999999999988855433322 35678999999999965555544331 2221110000 0
Q ss_pred ccCCCCCcchHHHHhhcCCChhhhHHhh-hhccCCCCcccchhHHHHHHHHhcCCcCCCCCchHHHHHHHHHH-HHHhCC
Q 038265 384 LRQAPDDILPALRLSYDQLPPHLKQCFA-YCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEELEKIGMRYFK-ELCSRS 461 (883)
Q Consensus 384 ~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~~~~~~~~~l~-~L~~~~ 461 (883)
....-......+...|..|++..+..+. ....|+.+ .+..+.+.. - +... ...+++.++ .|++.+
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~-----~-lg~~------~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAA-----A-LGEE------RDTIEDVYEPYLIQQG 305 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHH-----H-HCCC------cchHHHHhhHHHHHcC
Confidence 0000011223445667888888877775 55666655 455444322 1 1111 122344455 788889
Q ss_pred Cceec
Q 038265 462 FFQDL 466 (883)
Q Consensus 462 ll~~~ 466 (883)
+++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 98643
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=1.2e-10 Score=137.80 Aligned_cols=102 Identities=32% Similarity=0.440 Sum_probs=48.8
Q ss_pred cccEEEecCcc--ccccccc-cCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEE
Q 038265 561 SLRVLVLMNSA--IEVLPRK-MGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 637 (883)
Q Consensus 561 ~L~~L~l~~~~--~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 637 (883)
.|+.|-+.+|. +..++.. |..++.|++|||++|....++|.+++.+-+|++|++++ +.+..+|.++++|++|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence 45555554443 3333322 44455555555555554555555555555555555554 33445555555555555555
Q ss_pred eCCcccc-ccccccCCCCCCCeEEeec
Q 038265 638 VTTKQKS-LLESGIGCLSSLRFLMISD 663 (883)
Q Consensus 638 l~~~~~~-~~~~~~~~l~~L~~L~l~~ 663 (883)
+..+... .++.....+++|++|.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcccccEEEeec
Confidence 5544332 2222223355555555543
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.99 E-value=4.1e-09 Score=108.22 Aligned_cols=186 Identities=21% Similarity=0.209 Sum_probs=94.8
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC------------CcHHHHHHHH------
Q 038265 166 IIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD------------FGKRQIMTKI------ 227 (883)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~------------~~~~~~~~~i------ 227 (883)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++.+.+.... .........+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSL 74 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHH
Confidence 799999999999988652 3568999999999999999999876511 0111111121
Q ss_pred ----HHHh---hCCCC-------CCCChHHHHHHHHHHc--CCCceEEEEeCCCCCC------hhhHHHHHHhcCC--CC
Q 038265 228 ----INSV---IGGNH-------GNLDPDRMQKVLRDSL--NGKRYLLVMDDVWNED------PRAWGELKSLLLG--GA 283 (883)
Q Consensus 228 ----~~~~---~~~~~-------~~~~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~------~~~~~~l~~~l~~--~~ 283 (883)
...+ ..... ...........+.+.+ .+++++||+||+.... ..-...+...+.. ..
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ 154 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc
Confidence 1111 11100 0011122222232333 2356999999995433 1111223333322 12
Q ss_pred CCCEEEEeecChHHHHH-Hc----ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 284 EGSKILVTTRSNKVALI-MG----TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 284 ~gs~iivTtr~~~v~~~-~~----~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
..-.+|+++........ .. .......+.+++|+.+++++++....-.. ... +...+...+|...+||+|..|.
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 23344455444444332 00 11112458999999999999999876333 111 2234556899999999998876
Q ss_pred H
Q 038265 359 T 359 (883)
Q Consensus 359 ~ 359 (883)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2.7e-11 Score=128.54 Aligned_cols=144 Identities=31% Similarity=0.464 Sum_probs=92.1
Q ss_pred EEecCccccccccccC--CCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcc
Q 038265 565 LVLMNSAIEVLPRKMG--NLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 642 (883)
Q Consensus 565 L~l~~~~~~~lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 642 (883)
|.|++-.++.+|..-. .+..-...+++.|+ ..++|..++.+-.|+.|.|..| .+..+|..++++..|++|+++.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence 4455555555554322 22333456666665 5667776777777777777653 445566677777777777777777
Q ss_pred ccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 643 KSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 643 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
+..+|..++.|+ |+.|-+++ ++++.+|..++.+..|..|+.+.|. +..+|+.++.+.+|+.|.+..|.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh
Confidence 777766666655 66666665 4456677777777777777776654 45667667777777777766654
No 33
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.96 E-value=2.4e-07 Score=101.91 Aligned_cols=288 Identities=15% Similarity=0.117 Sum_probs=160.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------------------CCCcHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-------------------KDFGKRQI 223 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------------------~~~~~~~~ 223 (883)
++.++||++++++|..++..... +.....+.|+|++|+|||+++++++++. ...+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 45799999999999999865221 1334578999999999999999998642 11235677
Q ss_pred HHHHHHHhhC--CCC--CCCChHHHHHHHHHHcC--CCceEEEEeCCCCCC---hhhHHHHHHhc-CCCC--CCCEEEEe
Q 038265 224 MTKIINSVIG--GNH--GNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNED---PRAWGELKSLL-LGGA--EGSKILVT 291 (883)
Q Consensus 224 ~~~i~~~~~~--~~~--~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iivT 291 (883)
+..++.++.+ ... ...+..+....+.+.+. +++++||||+++... ......+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 8888887742 211 12234455555656553 567899999997652 11112222221 1111 22345555
Q ss_pred ecChHHHHHHc----ccCCCCceecCCCChhcHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHhCCCchHH-HHHHhhh
Q 038265 292 TRSNKVALIMG----TMRGTTGYNLQELPYKDCLSLFMKCAFKE--GKEKHPNLVKIGEKIMEKCRGIPLAV-RTVGSLL 364 (883)
Q Consensus 292 tr~~~v~~~~~----~~~~~~~~~l~~L~~~~a~~lf~~~a~~~--~~~~~~~~~~~~~~i~~~c~glPLai-~~~~~~L 364 (883)
|.......... ..-....+.+++.+.++..+++..++... .....++..+...+++....|.|-.+ .++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55443321111 11111468899999999999999887311 11122333445566777778888443 3222111
Q ss_pred --c---CC--CCHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhhhHHhhhhccCC--CCcccchhHHHHHH--HH
Q 038265 365 --Y---GS--TDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFP--KDYKFASVHLVQFW--MA 433 (883)
Q Consensus 365 --~---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp--~~~~~~~~~Li~~w--~a 433 (883)
+ +. -+.+..+.+.+.. -.....-++..||.+.|..+..++..- .+..+...++...+ ++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 00 1222222222111 012334567889998887666554321 33345555555422 22
Q ss_pred hcCCcCCCCCchHHHHHHHHHHHHHhCCCceec
Q 038265 434 QGLLQSPNENEELEKIGMRYFKELCSRSFFQDL 466 (883)
Q Consensus 434 ~gli~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 466 (883)
+.+ . ...........++..|...+++...
T Consensus 322 ~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred Hhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 211 1 1112245567889999999999765
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=3.6e-11 Score=127.55 Aligned_cols=129 Identities=28% Similarity=0.402 Sum_probs=60.3
Q ss_pred hhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccC
Q 038265 555 CISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 634 (883)
Q Consensus 555 ~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 634 (883)
++.++..|.+|+|+.|.+..+|..++.|+ |+.|-+++|+ ++.+|..++.++.|..||.+.| .+..+|..++.+.+|+
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr 192 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLR 192 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHH
Confidence 34444445555555555555554444443 4444444432 4444544554445555555432 3344444455555555
Q ss_pred EEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccc
Q 038265 635 MFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSC 688 (883)
Q Consensus 635 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (883)
.|++..|.+..+|..+..| .|.+||++. +++..+|..|.+|+.|+.|-|.+|
T Consensus 193 ~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 193 DLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred HHHHhhhhhhhCCHHHhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccC
Confidence 5555555544444444422 244444443 333444545555555555555443
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.6e-10 Score=117.61 Aligned_cols=213 Identities=21% Similarity=0.128 Sum_probs=124.9
Q ss_pred ccCCcccEEEecCcccccccc--ccCCCCCceEecccCCcccc--ccCccccCCCcccEeecCCCCCCccCCcc-ccCCc
Q 038265 557 SKSKSLRVLVLMNSAIEVLPR--KMGNLRQLRHLDLSGNRKIK--KLPNSICELQSLQTLNLGDCLELEELPKD-IRYLV 631 (883)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~ 631 (883)
++++.|+...|.++.+...+. ....|++++.|||++|-+.. .+-.....+|+|+.|+|+.|....-.... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467788888888888776663 56778888888888874322 22233456888888888876543221111 13566
Q ss_pred ccCEEEeCCcccc--ccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCC-cccCCCCCCccEEE
Q 038265 632 SLRMFVVTTKQKS--LLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISL-PPAMKYLSSLETLI 708 (883)
Q Consensus 632 ~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~ 708 (883)
+|+.|.++.|.++ .+......+|+|+.|++.+|..+..-......+..|+.|+|++|+.+..- -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 7777777777766 12223345677777777776433222233345667777777776654321 13456667777776
Q ss_pred eccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCC--ccCCCC
Q 038265 709 LLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALP--RSLKDL 786 (883)
Q Consensus 709 L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp--~~~~~l 786 (883)
++.|..-++.. -.+ ..+.. ...+++|++|+++.|+. ..++ ..+..+
T Consensus 278 ls~tgi~si~~-------------------------~d~---~s~~k---t~~f~kL~~L~i~~N~I-~~w~sl~~l~~l 325 (505)
T KOG3207|consen 278 LSSTGIASIAE-------------------------PDV---ESLDK---THTFPKLEYLNISENNI-RDWRSLNHLRTL 325 (505)
T ss_pred ccccCcchhcC-------------------------CCc---cchhh---hcccccceeeecccCcc-ccccccchhhcc
Confidence 66653221110 000 00000 13568899999998864 2222 235567
Q ss_pred ccccccccccccccc
Q 038265 787 EALENLLITSCPKLS 801 (883)
Q Consensus 787 ~~L~~L~L~~c~~l~ 801 (883)
++|+.|.+..|+..+
T Consensus 326 ~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 326 ENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhhcccccccc
Confidence 788888877776543
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7.1e-10 Score=114.47 Aligned_cols=182 Identities=18% Similarity=0.157 Sum_probs=98.4
Q ss_pred CCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccc---cccccCCCCCceEecccCCccccccCc-cccC
Q 038265 530 PDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEV---LPRKMGNLRQLRHLDLSGNRKIKKLPN-SICE 605 (883)
Q Consensus 530 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 605 (883)
.++.+|+.+.+.....+....- .....|++++.|||+.|-+.. +-.....+++|+.|+|+.|.+..-... .-..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3556667766654333322211 334567777777777776642 223345677777777777753221111 0124
Q ss_pred CCcccEeecCCCCCCc-cCCccccCCcccCEEEeCCcc-ccccccccCCCCCCCeEEeecCCCcccc-ccccccCcccce
Q 038265 606 LQSLQTLNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQ-KSLLESGIGCLSSLRFLMISDCGNLEYL-FEDIDQLSVLRS 682 (883)
Q Consensus 606 l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~ 682 (883)
+++|+.|.|+.|.... .+-.....+++|..|++..|. +..-.....-+..|+.|+|++|+.+..- ....+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 5677777777776542 222334556777777777774 2211122334566777777776554321 134567777777
Q ss_pred eeeccccCCC-CCccc-----CCCCCCccEEEeccCC
Q 038265 683 LVINSCPRLI-SLPPA-----MKYLSSLETLILLKCE 713 (883)
Q Consensus 683 L~l~~~~~~~-~l~~~-----l~~l~~L~~L~L~~~~ 713 (883)
|+++.|.... ..|+. ...+++|++|++..|+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 7777665422 22222 2345566666665543
No 37
>PF05729 NACHT: NACHT domain
Probab=98.84 E-value=1.8e-08 Score=97.28 Aligned_cols=131 Identities=19% Similarity=0.265 Sum_probs=78.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCC------------------CCcH----HHHHHHHHHHhhCCCCCCCChHHHHHHHH
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQK------------------DFGK----RQIMTKIINSVIGGNHGNLDPDRMQKVLR 249 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~------------------~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 249 (883)
+++.|+|.+|+||||+++.++.... .... ..+...+..... .. ..... ..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~--~~~~~---~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLP-ES--IAPIE---ELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhc-cc--hhhhH---HHHH
Confidence 5899999999999999999876540 0000 112222222111 11 01111 1122
Q ss_pred H-HcCCCceEEEEeCCCCCChh-------hHHH-HHHhcCC-CCCCCEEEEeecChHHHHHHcccCCCCceecCCCChhc
Q 038265 250 D-SLNGKRYLLVMDDVWNEDPR-------AWGE-LKSLLLG-GAEGSKILVTTRSNKVALIMGTMRGTTGYNLQELPYKD 319 (883)
Q Consensus 250 ~-~l~~kr~LlvlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l~~L~~~~ 319 (883)
. ....++++||+|++++.... .+.. +...+.. ..+++++|||||................+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 2 22578999999999764321 1222 2333333 35689999999987664333222233679999999999
Q ss_pred HHHHHHHHH
Q 038265 320 CLSLFMKCA 328 (883)
Q Consensus 320 a~~lf~~~a 328 (883)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987764
No 38
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.74 E-value=7e-07 Score=100.80 Aligned_cols=288 Identities=18% Similarity=0.184 Sum_probs=176.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------------CCCcHHHHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-------------KDFGKRQIMTKIIN 229 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------------~~~~~~~~~~~i~~ 229 (883)
+...|-|.. +.+.|... .+.+.+.|..++|-|||||+-.+.... ..-++..+...++.
T Consensus 18 ~~~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred cccccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHH
Confidence 445566654 66666442 467999999999999999998886422 44567777777776
Q ss_pred HhhCC-------------CCCCCChHHHHHHHHHHcC--CCceEEEEeCCCCCCh-hhHHHHHHhcCCCCCCCEEEEeec
Q 038265 230 SVIGG-------------NHGNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNEDP-RAWGELKSLLLGGAEGSKILVTTR 293 (883)
Q Consensus 230 ~~~~~-------------~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtr 293 (883)
.+... .....+...+.+.+...+. .++..+||||..-... .-...+...+....++-.+|||||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 66311 1122334445555555454 3689999999865432 223345555566677889999999
Q ss_pred ChHHHHHHcccCCCCceecC----CCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCC
Q 038265 294 SNKVALIMGTMRGTTGYNLQ----ELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTD 369 (883)
Q Consensus 294 ~~~v~~~~~~~~~~~~~~l~----~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~ 369 (883)
...-.......-....+++. .++.+|+.++|..... . +-....++.+.+..+|=+-|+..++=.+++..+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l---~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L---PLDAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C---CCChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 86544322211111233333 4788999999987651 1 111244688999999999999999988873333
Q ss_pred HHHHHHHHccccccccCCCCCcchHH-HHhhcCCChhhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCCCchHHH
Q 038265 370 EHDWEHVRDNDIWKLRQAPDDILPAL-RLSYDQLPPHLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEELEK 448 (883)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~~~~ 448 (883)
.+.--.. +....+.+.+.| .--++.||+.+|..++-||+++.- . ..|+... +.++
T Consensus 243 ~~q~~~~-------LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L-------------tg~~ 298 (894)
T COG2909 243 AEQSLRG-------LSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL-------------TGEE 298 (894)
T ss_pred HHHHhhh-------ccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-------------hcCC
Confidence 2211111 111111222222 234789999999999999998542 1 1122211 1123
Q ss_pred HHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHHHHHHHhc
Q 038265 449 IGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHDLALLVAK 493 (883)
Q Consensus 449 ~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~dla~~i~~ 493 (883)
.+...+++|.+++++-..-++. ...| +.|.+..++-+.-..
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~--~~Wf--ryH~LFaeFL~~r~~ 339 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDE--GQWF--RYHHLFAEFLRQRLQ 339 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCC--Ccee--ehhHHHHHHHHhhhc
Confidence 4567799999999975432222 2456 889999998765544
No 39
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.72 E-value=3.2e-07 Score=109.66 Aligned_cols=250 Identities=17% Similarity=0.222 Sum_probs=148.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC------------CCC------c-HHHHHH
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ------------KDF------G-KRQIMT 225 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------------~~~------~-~~~~~~ 225 (883)
.++||+.+++.|...+..... ....++.+.|..|||||+|+++|.... .+| . ..+.++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHH
Confidence 378999999999998876432 445699999999999999999997754 111 0 112222
Q ss_pred HHHHHh------------------------------------hCCCCC-----CCChHH-----HHHHHHHHc-CCCceE
Q 038265 226 KIINSV------------------------------------IGGNHG-----NLDPDR-----MQKVLRDSL-NGKRYL 258 (883)
Q Consensus 226 ~i~~~~------------------------------------~~~~~~-----~~~~~~-----~~~~l~~~l-~~kr~L 258 (883)
++..++ .+.... ...... ....+.... +.++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 222221 110000 001111 112222333 356999
Q ss_pred EEEeCCCCCChhhHHHHHHhcCCCCC----CCEEEEeecChHH-HHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCC
Q 038265 259 LVMDDVWNEDPRAWGELKSLLLGGAE----GSKILVTTRSNKV-ALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGK 333 (883)
Q Consensus 259 lvlDdv~~~~~~~~~~l~~~l~~~~~----gs~iivTtr~~~v-~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~ 333 (883)
+|+||+.+.|....+-+......... ...|..+...... ............+.+.||+..+..++.........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~- 236 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK- 236 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc-
Confidence 99999988876666555444332210 1123332222211 22222222236899999999999999888763221
Q ss_pred CCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCC------CCHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhhh
Q 038265 334 EKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGS------TDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHLK 407 (883)
Q Consensus 334 ~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 407 (883)
....+....|+++..|+|+.+..+-..+... .+...|..-. .........+++.+.+..-.+.||...|
T Consensus 237 ---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~--~~i~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 237 ---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSI--ASLGILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred ---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccH--HhcCCchhhHHHHHHHHHHHhcCCHHHH
Confidence 2233567899999999999999999888753 2233333111 0001111112344467788999999999
Q ss_pred HHhhhhccCCCCcccc
Q 038265 408 QCFAYCSIFPKDYKFA 423 (883)
Q Consensus 408 ~~fl~~s~fp~~~~~~ 423 (883)
..+...|++...+..+
T Consensus 312 ~Vl~~AA~iG~~F~l~ 327 (849)
T COG3899 312 EVLKAAACIGNRFDLD 327 (849)
T ss_pred HHHHHHHHhCccCCHH
Confidence 9999999997655433
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.70 E-value=4.2e-10 Score=115.47 Aligned_cols=263 Identities=19% Similarity=0.192 Sum_probs=143.4
Q ss_pred hhccCCcccEEEecCccc-c--ccccccCCCCCceEecccCCcccccc--CccccCCCcccEeecCCCCCCcc--CCccc
Q 038265 555 CISKSKSLRVLVLMNSAI-E--VLPRKMGNLRQLRHLDLSGNRKIKKL--PNSICELQSLQTLNLGDCLELEE--LPKDI 627 (883)
Q Consensus 555 ~~~~~~~L~~L~l~~~~~-~--~lp~~~~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~L~~~~~~~~--lp~~~ 627 (883)
+...+++++.|.+.++.. + .+-..-..+++|++|++..|..++.. -.....+++|++|++++|..+.. +..-.
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 345566666666655541 1 11111234666677776665544321 11223466777777777655433 11122
Q ss_pred cCCcccCEEEeCCccccc---cccccCCCCCCCeEEeecCCCccccc--cccccCcccceeeeccccCCCCCc--ccCCC
Q 038265 628 RYLVSLRMFVVTTKQKSL---LESGIGCLSSLRFLMISDCGNLEYLF--EDIDQLSVLRSLVINSCPRLISLP--PAMKY 700 (883)
Q Consensus 628 ~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~l~--~~l~~ 700 (883)
..+++|+.+.+.+|.-.. +...-..+.-+.++++..|..+++.. ..-..+..|+.|+.++|......+ .-..+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 334444444444432211 11111233445555555665444322 112346677777777776644322 12345
Q ss_pred CCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccC-
Q 038265 701 LSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMAL- 779 (883)
Q Consensus 701 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~l- 779 (883)
+.+|+.|.++.|..++....... ...+..|+.+++..|....+..-.-+..+++.|+.|.++.|..++..
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l---------~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTML---------GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred CCceEEEeccccchhhhhhhhhh---------hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence 67788888877775443221111 23344677777777655444322223367888888888888765543
Q ss_pred ----CccCCCCcccccccccccccccc-CCCCCCCCCCcCeeeccCCcchhh
Q 038265 780 ----PRSLKDLEALENLLITSCPKLSS-LPEGMHHLTTLKTLAIEECPALCE 826 (883)
Q Consensus 780 ----p~~~~~l~~L~~L~L~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~ 826 (883)
...-..+..|..|.|++|+.+.. .-+.+..+++|+.+++.+|...+.
T Consensus 390 i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 390 IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 33345567888888999887653 334567788899999988876554
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.69 E-value=1.1e-07 Score=105.30 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=105.5
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-CcHHHHHHHHHHHhhCCCCCCC
Q 038265 164 SDIIGRYEDGEK---IIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-FGKRQIMTKIINSVIGGNHGNL 239 (883)
Q Consensus 164 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~~~~i~~~~~~~~~~~~ 239 (883)
+++||.+..+.. +..++.. .....+.++|++|+||||+|+.+++.... |-. +........
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~----------l~a~~~~~~ 75 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA----------LSAVTSGVK 75 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE----------EecccccHH
Confidence 468888877655 6676643 33557888999999999999999875421 100 000000000
Q ss_pred ChHHHHHHHHHH-cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEE--eecChHHHHHHcccCCCCceecCCCC
Q 038265 240 DPDRMQKVLRDS-LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV--TTRSNKVALIMGTMRGTTGYNLQELP 316 (883)
Q Consensus 240 ~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~~~~~~~~~~~~~l~~L~ 316 (883)
+.....+..... ..+++.+|++|+++.......+.+...+.. |..++| ||.+...............+.+.+++
T Consensus 76 ~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls 152 (413)
T PRK13342 76 DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLS 152 (413)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCC
Confidence 111122222211 245788999999987765555556555543 445554 34443221111111223678999999
Q ss_pred hhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhh
Q 038265 317 YKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSL 363 (883)
Q Consensus 317 ~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 363 (883)
.++..+++.+.+.........-..+....|++.|+|.|..+..+...
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999886633211100222355678999999999766554433
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.1e-08 Score=97.02 Aligned_cols=102 Identities=28% Similarity=0.433 Sum_probs=24.3
Q ss_pred CCcccEEEecCccccccccccC-CCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccc-cCCcccCEE
Q 038265 559 SKSLRVLVLMNSAIEVLPRKMG-NLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDI-RYLVSLRMF 636 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L 636 (883)
...++.|+|+++.|..+. .++ .+.+|+.|++++|. +..++. +..+++|++|++++|. +..++..+ ..+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 345666666666666553 343 45666666666664 445543 5556666666666543 33343333 245566666
Q ss_pred EeCCccccccc--cccCCCCCCCeEEeecC
Q 038265 637 VVTTKQKSLLE--SGIGCLSSLRFLMISDC 664 (883)
Q Consensus 637 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~ 664 (883)
++++|.+..+. ..+..+++|+.|++.+|
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 66665554221 12233444444444443
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.4e-08 Score=113.13 Aligned_cols=185 Identities=31% Similarity=0.388 Sum_probs=135.9
Q ss_pred hccCCcccEEEecCccccccccccCCCC-CceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccC
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLR-QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 634 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 634 (883)
+..++.+..|++.++.+..+|.....+. +|+.|++++|. +..+|..+..+++|+.|++++| .+..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 3445788899999999999888887774 89999999876 7777767888999999999875 5667777776888889
Q ss_pred EEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCC
Q 038265 635 MFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCES 714 (883)
Q Consensus 635 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~ 714 (883)
.|++++|.+..+|..+..+..|++|.+++|.. ...+..+.+++++..|.+.+|. ...++..+..+++|++|++++|.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~- 266 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQ- 266 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCce-eeeccchhccccccceecccccc-
Confidence 99999998888887666777788888887643 3345667777788877765544 33445666777777777777653
Q ss_pred CccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccC
Q 038265 715 LDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSL 783 (883)
Q Consensus 715 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~ 783 (883)
+..++. + +.+.+|+.|+++++.....+|...
T Consensus 267 -----------------------------------i~~i~~-~--~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 267 -----------------------------------ISSISS-L--GSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred -----------------------------------cccccc-c--cccCccCEEeccCccccccchhhh
Confidence 223332 2 466788899998887666655433
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.9e-08 Score=112.09 Aligned_cols=121 Identities=29% Similarity=0.346 Sum_probs=52.3
Q ss_pred EEecCccccccccccCCCCCceEecccCCccccccCccccCCC-cccEeecCCCCCCccCCccccCCcccCEEEeCCccc
Q 038265 565 LVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQ-SLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQK 643 (883)
Q Consensus 565 L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 643 (883)
+++..+.+...+..+..+..++.|++.+|. +..+|.....+. +|+.|++++ +.+..+|..++.+++|+.|+++.|.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchh
Confidence 344444432222333333444455544443 444444444442 455555544 23333444444455555555555554
Q ss_pred cccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccc
Q 038265 644 SLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSC 688 (883)
Q Consensus 644 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (883)
..++...+.+++|+.|++++| .+..+|..++.+..|++|.+++|
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 444433334445555555442 22334433333344445544443
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.65 E-value=9.4e-08 Score=98.71 Aligned_cols=170 Identities=18% Similarity=0.278 Sum_probs=101.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCcHHHHHHHHHHHhhCCCCCCCCh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFGKRQIMTKIINSVIGGNHGNLDP 241 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 241 (883)
..+++|-...+.++++ . ..+.-...||++|+||||||+.+..... .|.. + .......
T Consensus 29 Q~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~----------~---sAv~~gv 86 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA----------L---SAVTSGV 86 (436)
T ss_pred hHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEE----------e---ccccccH
Confidence 3445555555554443 2 5577788999999999999999876541 1100 0 1111122
Q ss_pred HHHHHHHH----HHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEE--eecChHHHHHHcccCCCCceecCCC
Q 038265 242 DRMQKVLR----DSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV--TTRSNKVALIMGTMRGTTGYNLQEL 315 (883)
Q Consensus 242 ~~~~~~l~----~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~~~~~~~~~~~~~l~~L 315 (883)
.++...+. ....++|.+|++|.|+.-+-. +-...+|.-..|.-|+| ||.++...-.-.....+.++++++|
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~---QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L 163 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNKA---QQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPL 163 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcChh---hhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecC
Confidence 23322222 234589999999999765432 33344555566877776 7777644322222233478999999
Q ss_pred ChhcHHHHHHHHHhcCCCCCC---cch-HHHHHHHHHHhCCCchHH
Q 038265 316 PYKDCLSLFMKCAFKEGKEKH---PNL-VKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 316 ~~~~a~~lf~~~a~~~~~~~~---~~~-~~~~~~i~~~c~glPLai 357 (883)
+.++-.+++.+.+........ ..+ .+...-+++.++|---+.
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 999999999884422221111 112 235567888888876443
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=1.8e-09 Score=108.68 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=53.6
Q ss_pred HHhhccCCcccEEEecCcccc-----ccccccCCCCCceEecccCCcccc----ccCcc-------ccCCCcccEeecCC
Q 038265 553 TSCISKSKSLRVLVLMNSAIE-----VLPRKMGNLRQLRHLDLSGNRKIK----KLPNS-------ICELQSLQTLNLGD 616 (883)
Q Consensus 553 ~~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~~-------~~~l~~L~~L~L~~ 616 (883)
......+..+..++|++|.+. .+.+.+.+.++|+..++++- +.+ ++|+. +-+++.|++||||+
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334556777888888888774 34455666677888887742 232 33432 33566788888887
Q ss_pred CCCCccCCcc----ccCCcccCEEEeCCcccc
Q 038265 617 CLELEELPKD----IRYLVSLRMFVVTTKQKS 644 (883)
Q Consensus 617 ~~~~~~lp~~----~~~l~~L~~L~l~~~~~~ 644 (883)
|-....-+.. +..+..|++|.|.+|.+.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 6554443333 234555555555555443
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=4.6e-09 Score=102.90 Aligned_cols=128 Identities=22% Similarity=0.185 Sum_probs=87.2
Q ss_pred CCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEe
Q 038265 582 LRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMI 661 (883)
Q Consensus 582 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 661 (883)
...|+.||||+|. +..+.+++.-+|.++.|++|.|.... + .++..+++|++|++++|.+..+..+-.++.|+++|.+
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 4567778888775 66777777777888888888754432 2 2467777888888888877766555566778888888
Q ss_pred ecCCCccccccccccCcccceeeeccccCCC-CCcccCCCCCCccEEEeccCCC
Q 038265 662 SDCGNLEYLFEDIDQLSVLRSLVINSCPRLI-SLPPAMKYLSSLETLILLKCES 714 (883)
Q Consensus 662 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~L~L~~~~~ 714 (883)
+.|. ++.+ ..++++-+|..|++++|+.-. .-...++++|.|++|.|.+|+.
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 7743 3333 456777788888888766422 1124577788888888877653
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.60 E-value=2.1e-06 Score=97.25 Aligned_cols=241 Identities=16% Similarity=0.181 Sum_probs=135.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIG 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~ 233 (883)
-.+++|.++..+++.+|+.....+ ...+.+.|+|++|+||||+|+.++++.. .+........++.....
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~ 90 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAAT 90 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhc
Confidence 356999999999999998653211 2267899999999999999999988762 01111111111111100
Q ss_pred CCCCCCChHHHHHHHHHHcC-CCceEEEEeCCCCCCh----hhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccCCCC
Q 038265 234 GNHGNLDPDRMQKVLRDSLN-GKRYLLVMDDVWNEDP----RAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMRGTT 308 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~ 308 (883)
. ..+. .++-+||+|+++.... .....+...+.. .+..||+|+.+..-...-.....+.
T Consensus 91 ~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~ 153 (482)
T PRK04195 91 S---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACL 153 (482)
T ss_pred c---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccce
Confidence 0 0111 3678999999976432 335555555543 3345777765432111000111236
Q ss_pred ceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCC---CHHHHHHHHcccccccc
Q 038265 309 GYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGST---DEHDWEHVRDNDIWKLR 385 (883)
Q Consensus 309 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~---~~~~w~~~~~~~~~~~~ 385 (883)
.+++.+++.++....+...+...+.... .+....|++.++|..-.+......+.... +.+.-..+.. .
T Consensus 154 ~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~ 224 (482)
T PRK04195 154 MIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------R 224 (482)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------C
Confidence 7899999999999988887755444322 35668899999997766554433343321 2222222211 1
Q ss_pred CCCCCcchHHHHhhc-CCChhhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcC
Q 038265 386 QAPDDILPALRLSYD-QLPPHLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQS 439 (883)
Q Consensus 386 ~~~~~i~~~l~~sy~-~L~~~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~ 439 (883)
....+++.++..-+. .-.......+.. ..++.+ .+-.|+.+++...
T Consensus 225 d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 225 DREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccc
Confidence 223455666654443 222222222221 223333 4668999998754
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=1.5e-08 Score=99.42 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=79.7
Q ss_pred cccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCcc
Q 038265 626 DIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLE 705 (883)
Q Consensus 626 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 705 (883)
.+..++.|+.+++++|.++.+..++.-++.++.|++++|.... ...+..+++|+.|+|++|. +..+..+-..+.+++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccch-hHhhhhhHhhhcCEe
Confidence 3444566666777777666665556666677777776655432 2335666667777776643 333333434455556
Q ss_pred EEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccC--CccC
Q 038265 706 TLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMAL--PRSL 783 (883)
Q Consensus 706 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~l--p~~~ 783 (883)
+|.|+.| .+.++... +.+-+|..||+++|+. ..+ -.++
T Consensus 356 tL~La~N------------------------------------~iE~LSGL---~KLYSLvnLDl~~N~I-e~ldeV~~I 395 (490)
T KOG1259|consen 356 TLKLAQN------------------------------------KIETLSGL---RKLYSLVNLDLSSNQI-EELDEVNHI 395 (490)
T ss_pred eeehhhh------------------------------------hHhhhhhh---Hhhhhheeccccccch-hhHHHhccc
Confidence 6665553 22222211 3456788889988853 332 2468
Q ss_pred CCCcccccccccccccc
Q 038265 784 KDLEALENLLITSCPKL 800 (883)
Q Consensus 784 ~~l~~L~~L~L~~c~~l 800 (883)
+++|+|+.|.|.+|+..
T Consensus 396 G~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 396 GNLPCLETLRLTGNPLA 412 (490)
T ss_pred ccccHHHHHhhcCCCcc
Confidence 89999999999999854
No 50
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=2.3e-08 Score=94.85 Aligned_cols=138 Identities=26% Similarity=0.336 Sum_probs=51.2
Q ss_pred cCccccccccccCCCCCceEecccCCccccccCcccc-CCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccccc
Q 038265 568 MNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSIC-ELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL 646 (883)
Q Consensus 568 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 646 (883)
..+.++..|. +.++.++++|+|++|. +..+.. ++ .+.+|+.|++++|. +..++ ++..+++|+.|++++|.+..+
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ---------------------------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-
T ss_pred cccccccccc-cccccccccccccccc-cccccc-hhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCcc
Confidence 3444555553 3456689999999987 555543 65 58899999999864 44554 678899999999999999987
Q ss_pred cccc-CCCCCCCeEEeecCCC--ccccccccccCcccceeeeccccCCCCC---cccCCCCCCccEEEecc
Q 038265 647 ESGI-GCLSSLRFLMISDCGN--LEYLFEDIDQLSVLRSLVINSCPRLISL---PPAMKYLSSLETLILLK 711 (883)
Q Consensus 647 ~~~~-~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~l---~~~l~~l~~L~~L~L~~ 711 (883)
...+ ..+++|++|++++|.. +..+ ..+..+++|+.|+|.+|+....- ...+..+|+|+.||-..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 5545 3689999999988753 2222 45678899999999998865431 12456788899887654
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=1.4e-08 Score=102.28 Aligned_cols=239 Identities=19% Similarity=0.190 Sum_probs=140.1
Q ss_pred CCCCCceeEEeeccCCcc-chhhhhHHhhccCCcccEEEecCccc----ccccc-------ccCCCCCceEecccCCccc
Q 038265 529 LPDLGRVRTIMLPIDDER-TSQSFVTSCISKSKSLRVLVLMNSAI----EVLPR-------KMGNLRQLRHLDLSGNRKI 596 (883)
Q Consensus 529 ~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~----~~lp~-------~~~~l~~L~~L~l~~~~~~ 596 (883)
...+..+..+.++.+..+ .-.......+.+.+.|+..++++-.. ..+|+ .+-.+++|++|+||.|-+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 445566777777643332 22345566677778888888876432 23343 3445678899999888654
Q ss_pred cccCc----cccCCCcccEeecCCCCCCcc-------------CCccccCCcccCEEEeCCccccccc-----cccCCCC
Q 038265 597 KKLPN----SICELQSLQTLNLGDCLELEE-------------LPKDIRYLVSLRMFVVTTKQKSLLE-----SGIGCLS 654 (883)
Q Consensus 597 ~~lp~----~~~~l~~L~~L~L~~~~~~~~-------------lp~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~ 654 (883)
...+. -+..+.+|++|.|.+|-.... .-..+.+-++|+.+....|.+..-+ ..+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 33332 345688889998887754321 1122344567777777777765322 3455567
Q ss_pred CCCeEEeecCCCcc----ccccccccCcccceeeeccccCCC----CCcccCCCCCCccEEEeccCCCCccCCccccccc
Q 038265 655 SLRFLMISDCGNLE----YLFEDIDQLSVLRSLVINSCPRLI----SLPPAMKYLSSLETLILLKCESLDLNLNMEMEEE 726 (883)
Q Consensus 655 ~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 726 (883)
.|+.+.++.|..-. -+...+..+++|+.|+|..|.... .+...+..+++|+.|++++|..-+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~---------- 255 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN---------- 255 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc----------
Confidence 77777777665321 123445667777777777765432 233345556667777776663211
Q ss_pred cCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCc----cCCccCCCCccccccccccccc
Q 038265 727 GSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFM----ALPRSLKDLEALENLLITSCPK 799 (883)
Q Consensus 727 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~L~~c~~ 799 (883)
.+...+...+ ....|+|+.|.+.+|.... .+...+...|.|..|+|++|..
T Consensus 256 ---------------------~Ga~a~~~al-~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 256 ---------------------EGAIAFVDAL-KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ---------------------ccHHHHHHHH-hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1111222222 2446788888888886543 1222345578888888888875
No 52
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.56 E-value=4e-06 Score=95.56 Aligned_cols=201 Identities=11% Similarity=0.053 Sum_probs=109.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------------------CCCcHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------------------KDFGKRQ 222 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------------------~~~~~~~ 222 (883)
++.+.||++++++|...|...-.+ .....++-|+|++|+|||+.++.|.+.. .-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 467899999999999888653321 1234678899999999999999996543 1123556
Q ss_pred HHHHHHHHhhCCCC-CCCChHHHHHHHHHHcC---CCceEEEEeCCCCCChhhHHHHHHhcC-CCCCCCEEEE--eecCh
Q 038265 223 IMTKIINSVIGGNH-GNLDPDRMQKVLRDSLN---GKRYLLVMDDVWNEDPRAWGELKSLLL-GGAEGSKILV--TTRSN 295 (883)
Q Consensus 223 ~~~~i~~~~~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlvlDdv~~~~~~~~~~l~~~l~-~~~~gs~iiv--Ttr~~ 295 (883)
++..|..++.+... ......+....+...+. +...+||||+++......-+.+...+. ....+++|+| +|.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 77777777744322 22233344444444442 234589999996532111111222221 1124566555 33221
Q ss_pred HH----HHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHH-HHHHHHHHhCCCchHHHHHHhhh
Q 038265 296 KV----ALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVK-IGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 296 ~v----~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~-~~~~i~~~c~glPLai~~~~~~L 364 (883)
+. ...+...-+...+...+.+.++-.+++..++........++..+ +|+.++..-|-.=.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 11111111113466799999999999999885332222232222 33333333333445665554443
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=5.1e-09 Score=107.71 Aligned_cols=260 Identities=17% Similarity=0.218 Sum_probs=174.5
Q ss_pred CcccEEEecCccc---cccccccCCCCCceEecccCCcccccc--CccccCCCcccEeecCCCCCCccCC--ccccCCcc
Q 038265 560 KSLRVLVLMNSAI---EVLPRKMGNLRQLRHLDLSGNRKIKKL--PNSICELQSLQTLNLGDCLELEELP--KDIRYLVS 632 (883)
Q Consensus 560 ~~L~~L~l~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~ 632 (883)
..|+.|.++++.- ..+-....+++++++|++.+|..++.- -..-..+++|++|++-.|..+.... .....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3577788877653 344344578899999999998755421 1222368999999999887765432 23356889
Q ss_pred cCEEEeCCcccc---ccccccCCCCCCCeEEeecCCCccc--cccccccCcccceeeeccccCCCCCc--ccCCCCCCcc
Q 038265 633 LRMFVVTTKQKS---LLESGIGCLSSLRFLMISDCGNLEY--LFEDIDQLSVLRSLVINSCPRLISLP--PAMKYLSSLE 705 (883)
Q Consensus 633 L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~ 705 (883)
|.+|+++.+..- .+.....++.+++.+.+.+|...+. +-..-+.+.-+.++++..|..++... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999876432 2222345666788887777765432 21222345567777777776655322 2234577889
Q ss_pred EEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCcc--CCccC
Q 038265 706 TLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMA--LPRSL 783 (883)
Q Consensus 706 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~--lp~~~ 783 (883)
.|+.++|..++....... ...+.+|+.|.+.+|..+++.-...+..+++.|+.+++..|..... +-..-
T Consensus 298 ~l~~s~~t~~~d~~l~aL---------g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWAL---------GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhcccCCCCCchHHHHHH---------hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 999998877543322211 2234589999999998887766666667889999999998865542 33334
Q ss_pred CCCccccccccccccccccC-----CCCCCCCCCcCeeeccCCcchhhhh
Q 038265 784 KDLEALENLLITSCPKLSSL-----PEGMHHLTTLKTLAIEECPALCERC 828 (883)
Q Consensus 784 ~~l~~L~~L~L~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~l~~~~ 828 (883)
.+++.|++|.|++|..+... ...-.....|..+.+++||.+++..
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 67899999999999876643 3333456789999999999877653
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3e-06 Score=92.23 Aligned_cols=187 Identities=16% Similarity=0.151 Sum_probs=115.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhC-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIG- 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~- 233 (883)
-.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+... +...-....++......
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 357999999999998888652 2356789999999999999999977541 11111122222221100
Q ss_pred ----CCCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 234 ----GNHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 234 ----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
........+...+.+... ..+++-++|+|+++..+...+..+...+.......++|++|.+.. +.....
T Consensus 90 ~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~-- 167 (363)
T PRK14961 90 LIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL-- 167 (363)
T ss_pred eEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH--
Confidence 000112233332222221 124556999999987776667777777766566777777776543 222211
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
..+..+++.+++.++..+.+...+...+.... .+.+..|++.++|.|-.+..
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 12367999999999999988887754432222 24567899999998864433
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.3e-09 Score=106.83 Aligned_cols=159 Identities=17% Similarity=0.215 Sum_probs=87.5
Q ss_pred CCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCC--cccCCCCCCccEEEeccCCCCccCCccccccccC
Q 038265 651 GCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISL--PPAMKYLSSLETLILLKCESLDLNLNMEMEEEGS 728 (883)
Q Consensus 651 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l--~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 728 (883)
..+.+|+.|.+.++..-..+...+..-.+|+.|+|+.|+..... .-.+.+|+.|..|+|++|..-+......
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~------ 280 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA------ 280 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH------
Confidence 34455555555554444444444555555555555555544321 1124455556666666554221110000
Q ss_pred CCCCCCCCCCcceEEeccCCCC---ccchhhhhcCCCCCccEEeecCCCCCcc-CCccCCCCccccccccccccccccCC
Q 038265 729 HHDCNNVRSHLRTLCVAELTQL---LELPQWLLQGSSKTLQMLTIGDCPNFMA-LPRSLKDLEALENLLITSCPKLSSLP 804 (883)
Q Consensus 729 ~~~~~~~~~~L~~L~l~~~~~l---~~l~~~~~~~~~~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~L~~c~~l~~lp 804 (883)
......+|+.|+++++... ..+... ...+|+|..|||++|..++. .-..+..++.|++|.++.|..+ +|
T Consensus 281 ---V~hise~l~~LNlsG~rrnl~~sh~~tL--~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p 353 (419)
T KOG2120|consen 281 ---VAHISETLTQLNLSGYRRNLQKSHLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IP 353 (419)
T ss_pred ---HhhhchhhhhhhhhhhHhhhhhhHHHHH--HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--Ch
Confidence 0111225666666655321 122222 36789999999999876653 2224567889999999998753 33
Q ss_pred C---CCCCCCCcCeeeccCCc
Q 038265 805 E---GMHHLTTLKTLAIEECP 822 (883)
Q Consensus 805 ~---~l~~l~~L~~L~l~~c~ 822 (883)
. .+...|+|.+|++.||-
T Consensus 354 ~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 354 ETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHeeeeccCcceEEEEecccc
Confidence 2 34667899999999873
No 56
>PTZ00202 tuzin; Provisional
Probab=98.54 E-value=1.5e-05 Score=84.27 Aligned_cols=165 Identities=10% Similarity=0.151 Sum_probs=103.2
Q ss_pred ccCccCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHHHHHHH
Q 038265 158 HSFVRTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMTKIINS 230 (883)
Q Consensus 158 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~~i~~~ 230 (883)
..+.+..+|+||+++...+...|.... ....+++.|.|++|+|||||++.+.... +..+..+++..++.+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~A 332 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKA 332 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHH
Confidence 344566789999999999999886532 1234699999999999999999988765 333778999999998
Q ss_pred hhCCCCCCCChHHHHHHHHHHc-----C-CCceEEEEeCCCCCCh-hhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcc
Q 038265 231 VIGGNHGNLDPDRMQKVLRDSL-----N-GKRYLLVMDDVWNEDP-RAWGELKSLLLGGAEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlvlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 303 (883)
+.... .....++.+.|.+.+ . +++.+||+-==...+. .-+.+.. .+.....-|.|++----+.+......
T Consensus 333 LGV~p--~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 333 LGVPN--VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred cCCCC--cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhccc
Confidence 86422 222233444443332 3 6777777753211111 1111111 23333456778876654443322222
Q ss_pred cCCCCceecCCCChhcHHHHHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
.+.-..|.+..++.++|.++-.+..
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhcc
Confidence 2223578899999999988766543
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=3.7e-06 Score=91.51 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=107.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC---------CcHHHHHHHHHHHhhCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD---------FGKRQIMTKIINSVIGG 234 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------~~~~~~~~~i~~~~~~~ 234 (883)
++++|++..++.+..++.. ...+.+.++|++|+||||+|+.+.+.... ++...+.......+...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 5689999999999888854 23345789999999999999998765411 11111111110100000
Q ss_pred C-----------CCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-H
Q 038265 235 N-----------HGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-V 297 (883)
Q Consensus 235 ~-----------~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 297 (883)
. ......+.....+.... ...+-+||+||++.........+...+......+++|+||.... +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 0 00001111112221111 23445899999976654445556655554445678888876532 1
Q ss_pred HHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 298 ALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 298 ~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
..... .....+++.+++.++..+++...+...+.... .+....+++.++|.+-.+..
T Consensus 169 ~~~L~--sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIR--SRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhc--CCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 11111 12257888999999999999887754443322 35667888999887755544
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.5e-06 Score=93.74 Aligned_cols=187 Identities=14% Similarity=0.137 Sum_probs=117.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhC-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIG- 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~- 233 (883)
-.++||.+...+.|..++... .-.+.+.++|+.|+||||+|+.+.+... .++.-.....+...-..
T Consensus 14 FddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 357999999999999988652 2357889999999999999998876541 11111122222111000
Q ss_pred ----CCCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccC
Q 038265 234 ----GNHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMR 305 (883)
Q Consensus 234 ----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~ 305 (883)
........++..+.+... ..+++-++|+|+++..+......+...+.....+.++|++|.+..-... ....
T Consensus 89 viEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~-TIlS 167 (702)
T PRK14960 89 LIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI-TVIS 167 (702)
T ss_pred eEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH-HHHH
Confidence 000112233333322221 2356678999999877766777777777665567788887776432211 1112
Q ss_pred CCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 306 GTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 306 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
.+..+++++++.++..+.+.+.+...+.... .+....|++.++|.+..+.
T Consensus 168 RCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 168 RCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2378999999999999999888755443322 2455789999999774443
No 59
>PRK06893 DNA replication initiation factor; Validated
Probab=98.46 E-value=5.8e-07 Score=91.02 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=90.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED 268 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~ 268 (883)
.+.+.++|++|+|||+|++++++... ..... +-..- ..+.....+.+.+. +.-+|||||+|...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~--y~~~~-----------~~~~~~~~~~~~~~-~~dlLilDDi~~~~ 104 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAI--YIPLS-----------KSQYFSPAVLENLE-QQDLVCLDDLQAVI 104 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE--EeeHH-----------HhhhhhHHHHhhcc-cCCEEEEeChhhhc
Confidence 35789999999999999999987531 00000 00000 00001111222222 33589999998642
Q ss_pred -hhhHHH-HHHhcCCC-CCCCEEEE-eecC---------hHHHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCC
Q 038265 269 -PRAWGE-LKSLLLGG-AEGSKILV-TTRS---------NKVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEK 335 (883)
Q Consensus 269 -~~~~~~-l~~~l~~~-~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~ 335 (883)
...|+. +...+... ..|..+|| |++. +.+...+... ..++++++++++.++++.+.++..+...
T Consensus 105 ~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~pd~e~~~~iL~~~a~~~~l~l 181 (229)
T PRK06893 105 GNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLNDLTDEQKIIVLQRNAYQRGIEL 181 (229)
T ss_pred CChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 234553 33323221 23555654 4543 3455544432 6889999999999999999987544332
Q ss_pred CcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 336 HPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 336 ~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
+ .++..-|++++.|..-++..+-..|
T Consensus 182 ~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 182 S---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred C---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2 3566788899988877666555444
No 60
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.46 E-value=2.9e-06 Score=86.42 Aligned_cols=165 Identities=14% Similarity=0.152 Sum_probs=96.9
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-------CcHHHHHHHHHHHhhCCCCCCCCh
Q 038265 169 RYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-------FGKRQIMTKIINSVIGGNHGNLDP 241 (883)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~ 241 (883)
.+..++.+..++.. .....|.|+|++|+|||+||+.+++.... .+...+....
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~-------------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD-------------- 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------------
Confidence 44566677776532 33568999999999999999999765310 0111111000
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCChh-hH-HHHHHhcCC-CCCCCEEEEeecChH---------HHHHHcccCCCCc
Q 038265 242 DRMQKVLRDSLNGKRYLLVMDDVWNEDPR-AW-GELKSLLLG-GAEGSKILVTTRSNK---------VALIMGTMRGTTG 309 (883)
Q Consensus 242 ~~~~~~l~~~l~~kr~LlvlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~~ 309 (883)
..+.+.+.+ .-+||+||++..+.. .| +.+...+.. ...+.++|+||+... +...+. ....
T Consensus 82 ----~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~---~~~~ 153 (226)
T TIGR03420 82 ----PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA---WGLV 153 (226)
T ss_pred ----HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh---cCee
Confidence 111122333 348999999764432 22 334333322 123447889888532 111221 1257
Q ss_pred eecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 310 YNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 310 ~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
+++.++++++...++...+...+... -.+....+++.+.|.|..+.-+-..+
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 89999999999999987653332222 23556788888999998877765444
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=3e-07 Score=107.17 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=44.4
Q ss_pred ceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccc-ccccccCCCCCCCeEEeec
Q 038265 585 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISD 663 (883)
Q Consensus 585 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~ 663 (883)
++.|+|++|.+.+.+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.+. .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555555444455555555555555555555444455555555555555555555444 3344444444444444444
Q ss_pred CCCcccccccc
Q 038265 664 CGNLEYLFEDI 674 (883)
Q Consensus 664 ~~~~~~~~~~l 674 (883)
|.....+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 44444444433
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=3.9e-06 Score=95.24 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=118.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHH----
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINS---- 230 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~---- 230 (883)
-+++||.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+... .++.-.....|...
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 357999999999999988542 2356778999999999999998876541 22222222222211
Q ss_pred hhC-CCCCCCChHHHHHHHHHHc----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccC
Q 038265 231 VIG-GNHGNLDPDRMQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMR 305 (883)
Q Consensus 231 ~~~-~~~~~~~~~~~~~~l~~~l----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~ 305 (883)
+.. +.......+++.+.+.... .++.-++|||+++..+...|..+...+-......++|+||.+..-... ....
T Consensus 90 viEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~-TIrS 168 (830)
T PRK07003 90 YVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV-TVLS 168 (830)
T ss_pred EEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc-hhhh
Confidence 000 0001122333333333221 245558899999888777788887777665667888888887543211 1112
Q ss_pred CCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc-hHHHHH
Q 038265 306 GTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP-LAVRTV 360 (883)
Q Consensus 306 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 360 (883)
.+..+.++.++.++..+.+.+.+...+... ..+....|++.++|.. -|+..+
T Consensus 169 RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 169 RCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred heEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 236799999999999999988774443322 2355678999998865 355443
No 63
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=7.2e-06 Score=93.08 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=114.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhh--
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVI-- 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~-- 232 (883)
-.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+... .++.......+...-.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 357999999999999998652 2346789999999999999998877541 1111111111111100
Q ss_pred ---CCCCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 233 ---GGNHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 233 ---~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
-........+.+.+.+... ..+++-++|+|+++..+......+...+......+++|++|.+.. +.....
T Consensus 90 vlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr-- 167 (709)
T PRK08691 90 LLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL-- 167 (709)
T ss_pred eEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH--
Confidence 0001122233333333221 235667899999977665556666666655445667777776532 211111
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
..+..+.+.+++.++....+.+.+-..+.... .+....|++.++|.+.-+..
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHH
Confidence 11256888999999999999888755443322 24568899999998854433
No 64
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=3.6e-07 Score=106.61 Aligned_cols=107 Identities=24% Similarity=0.351 Sum_probs=90.7
Q ss_pred cccEEEecCcccc-ccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeC
Q 038265 561 SLRVLVLMNSAIE-VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 639 (883)
Q Consensus 561 ~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 639 (883)
.++.|+|+++.+. .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999986 788889999999999999998778999999999999999999999889999999999999999999
Q ss_pred Ccccc-ccccccCCC-CCCCeEEeecCCCc
Q 038265 640 TKQKS-LLESGIGCL-SSLRFLMISDCGNL 667 (883)
Q Consensus 640 ~~~~~-~~~~~~~~l-~~L~~L~l~~~~~~ 667 (883)
+|.+. .+|..+..+ .++..+++.+|..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 99887 566665543 45667777766543
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.2e-09 Score=102.64 Aligned_cols=135 Identities=24% Similarity=0.226 Sum_probs=76.0
Q ss_pred CcccEEEecCcccc--ccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEE
Q 038265 560 KSLRVLVLMNSAIE--VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 637 (883)
Q Consensus 560 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 637 (883)
..|++|||++..++ .+..-+..|.+|+.|.+.++..-..+-..+.+-.+|+.|||+.|+.+.+....
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~----------- 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ----------- 253 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH-----------
Confidence 35777888877765 34444566778888888877765556566677778888888887655432211
Q ss_pred eCCccccccccccCCCCCCCeEEeecCCCccccccc-c-ccCcccceeeeccccCCC---CCcccCCCCCCccEEEeccC
Q 038265 638 VTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFED-I-DQLSVLRSLVINSCPRLI---SLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 638 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l-~~l~~L~~L~l~~~~~~~---~l~~~l~~l~~L~~L~L~~~ 712 (883)
..+.+++.|+.|+++.|......... + .--++|..|+|+||...- .+..-...+++|..|||++|
T Consensus 254 ----------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 254 ----------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred ----------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 12345556666666666544332111 1 112456666666654311 11111234566666666665
Q ss_pred CCC
Q 038265 713 ESL 715 (883)
Q Consensus 713 ~~l 715 (883)
..+
T Consensus 324 v~l 326 (419)
T KOG2120|consen 324 VML 326 (419)
T ss_pred ccc
Confidence 433
No 66
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.40 E-value=1.5e-06 Score=94.95 Aligned_cols=184 Identities=17% Similarity=0.119 Sum_probs=102.0
Q ss_pred cCCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCC
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDG-------ESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGG 234 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~ 234 (883)
...++.|+++.++++.+.+..+... +-...+-|.++|++|+|||++|+++++.....-..-....+.....+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhH
Confidence 3457999999999998877432110 112345699999999999999999988763221111111111111110
Q ss_pred CCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-----------hh---hHHHHHHhcCC--CCCCCEEEEeecChHHH
Q 038265 235 NHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-----------PR---AWGELKSLLLG--GAEGSKILVTTRSNKVA 298 (883)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~---~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 298 (883)
........+...-...+.+|+||+++... .. .+.++...+.. ...+.+||.||......
T Consensus 200 -----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 200 -----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred -----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 11111122222223467899999986421 11 12222222221 13466788888764322
Q ss_pred HHH--cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 299 LIM--GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 299 ~~~--~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
... ........+.+...+.++..++|..++.+......-+ ...+++.+.|..
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 111 1111135789999999999999998875443221112 256777777754
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=7.5e-06 Score=87.68 Aligned_cols=175 Identities=12% Similarity=0.124 Sum_probs=105.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--CCcHHHHHHHHHHHhhCCCCCCCCh
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--DFGKRQIMTKIINSVIGGNHGNLDP 241 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~ 241 (883)
.+++|.++.++.|..++.. .+.+-+.++|++|+||||+|+.+.+... .+.. ..-.+... .....
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~------~~~eln~s--d~~~~ 78 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKE------AVLELNAS--DDRGI 78 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCcc------ceeeeccc--ccccH
Confidence 5689999888888877654 2233467899999999999999877541 1110 00000000 01112
Q ss_pred HHHHHHHHHHc-------CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCceecC
Q 038265 242 DRMQKVLRDSL-------NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTGYNLQ 313 (883)
Q Consensus 242 ~~~~~~l~~~l-------~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~~~l~ 313 (883)
+.....++... .++.-++|||+++.........+...+......+++|+++.... +...... .+..+++.
T Consensus 79 ~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S--Rc~~i~f~ 156 (319)
T PLN03025 79 DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS--RCAIVRFS 156 (319)
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH--hhhcccCC
Confidence 22222222211 13466999999987765555556555544445677877775431 1111111 12578999
Q ss_pred CCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 314 ELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 314 ~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
++++++..+.+...+...+.... .+....|++.++|..-.+
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999999888755443322 245678899998876433
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=9.6e-06 Score=90.91 Aligned_cols=187 Identities=18% Similarity=0.213 Sum_probs=116.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-------------CcHHHHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-------------FGKRQIMTKIIN 229 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~~~~~~~i~~ 229 (883)
-.++||-+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+...- ++.......|..
T Consensus 15 FddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 357999999999999988653 33567899999999999999988765421 111112222211
Q ss_pred HhhCC-----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHH
Q 038265 230 SVIGG-----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVAL 299 (883)
Q Consensus 230 ~~~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 299 (883)
.-..+ .......+++.+.+... ..++.-++|+|+++..+...+..+...+-....++++|++|.+ ..+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 10000 00122334444333332 1356669999999888777777777776655556666666654 33332
Q ss_pred HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 300 IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 300 ~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
... ..+..+.+..++.++..+.+.+.+...+... ..+....|++.++|.|.-...
T Consensus 170 TIr--SRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 170 TVL--SRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHH--HHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 211 1237899999999999998888764333221 224457889999999864433
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5e-06 Score=90.85 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=112.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC--------CcHHHHHHHHHHHhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD--------FGKRQIMTKIINSVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--------~~~~~~~~~i~~~~~~~ 234 (883)
-.++||-+..+..|..++... .-.+.+.++|+.|+||||+|+.+.+.... ++.-.....+.......
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 357999999999998888652 22357899999999999999999776521 11111111222111100
Q ss_pred ----C-CCCCChHHHHH---HHHH-HcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHHHHccc
Q 038265 235 ----N-HGNLDPDRMQK---VLRD-SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVALIMGTM 304 (883)
Q Consensus 235 ----~-~~~~~~~~~~~---~l~~-~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~ 304 (883)
. ......+...+ .+.. ...++.-++|+|+++..+...+..+...+-.......+|++|.+ ..+.....
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~-- 169 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL-- 169 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH--
Confidence 0 01111222222 2211 12356679999999888777788877776554445555555554 33322221
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLA 356 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (883)
..+..|.+.+++.++..+.+.+.+...+... ..+....|++.++|.+.-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHH
Confidence 1236799999999999999888875444322 234568899999998843
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.38 E-value=4.1e-06 Score=97.70 Aligned_cols=172 Identities=19% Similarity=0.277 Sum_probs=98.1
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCc-HHHHHHHHHHHhhCCCCCC
Q 038265 164 SDIIGRYEDGE---KIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFG-KRQIMTKIINSVIGGNHGN 238 (883)
Q Consensus 164 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~-~~~~~~~i~~~~~~~~~~~ 238 (883)
++|+|.+..+. .+...+.. .+...+.++|++|+||||+|+.+++... .|. ...... ..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-----------~i 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-----------GV 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----------hh
Confidence 56899888774 45555533 3355678999999999999999987652 111 000000 00
Q ss_pred CChHHHHHHHHHHc--CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEe--ecChH--HHHHHcccCCCCceec
Q 038265 239 LDPDRMQKVLRDSL--NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVT--TRSNK--VALIMGTMRGTTGYNL 312 (883)
Q Consensus 239 ~~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~~~~~~~~~~~~~l 312 (883)
.+.........+.+ .+++.++||||++.......+.+...+. .|+.++|+ |.++. +..... .....+.+
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~--SR~~v~~l 165 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALV--SRSRLFRL 165 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhh--ccccceec
Confidence 01111222222222 2467899999998766555555554443 35555553 44432 111111 11367999
Q ss_pred CCCChhcHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 313 QELPYKDCLSLFMKCAFKE----GKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 313 ~~L~~~~a~~lf~~~a~~~----~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
++++.++...++.+.+... +.....-..+....|++.+.|..-.+
T Consensus 166 ~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 166 KSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 9999999999998776310 01111122345678888888875433
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.36 E-value=3.7e-06 Score=81.42 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=95.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCcHHHHHHHHHHHhhCCCCCCCCh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFGKRQIMTKIINSVIGGNHGNLDP 241 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 241 (883)
-++|||.++-++.+.-++.... .......-+..||++|+||||||..+.+... .|. ...+. .....
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~----------~~sg~--~i~k~ 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK----------ITSGP--AIEKA 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE----------EEECC--C--SC
T ss_pred HHHccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHhccCCCeE----------eccch--hhhhH
Confidence 4689999988887655443211 1224577889999999999999999988762 110 01111 11122
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCC--------CCCCCE-----------EEEeecChHHHHHHc
Q 038265 242 DRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG--------GAEGSK-----------ILVTTRSNKVALIMG 302 (883)
Q Consensus 242 ~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~--------~~~gs~-----------iivTtr~~~v~~~~~ 302 (883)
.++...+.. + +++-+|++|.++..+...-+.+.+++-+ .++++| |=.|||...+.....
T Consensus 90 ~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLr 167 (233)
T PF05496_consen 90 GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLR 167 (233)
T ss_dssp HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCC
T ss_pred HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHH
Confidence 334443332 3 3566888899987665444444444322 122222 335777644332222
Q ss_pred ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHh
Q 038265 303 TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGS 362 (883)
Q Consensus 303 ~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 362 (883)
.. -.-..+++..+.+|-.++..+.+..-+. +-..+.+.+|+++|.|-|--..-+-.
T Consensus 168 dR-Fgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 168 DR-FGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp TT-SSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred hh-cceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 11 0123478889999988888887744332 23346789999999999964443333
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.2e-05 Score=89.94 Aligned_cols=185 Identities=15% Similarity=0.204 Sum_probs=116.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC------------CcHHHHHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD------------FGKRQIMTKIINS 230 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~------------~~~~~~~~~i~~~ 230 (883)
-.+++|-+..+..+...+... .-.+.+.++|+.|+||||+|+.+++.... ...-.....+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 357899999999888877542 33467899999999999999999776521 1111111112111
Q ss_pred hhCC-----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEee-cChHHHHH
Q 038265 231 VIGG-----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT-RSNKVALI 300 (883)
Q Consensus 231 ~~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~ 300 (883)
.... .......+++...+... ..+++-++|+|+++......+..+...+....+.+.+|++| +...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0000 01122334444333322 23567789999998877778888888877666666666544 44444332
Q ss_pred HcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 301 MGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 301 ~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
... .+..+++.+++.++..+.+...+...+.... .+....|++.++|.+--+
T Consensus 175 I~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IIS--RCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHh--cceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 221 2367999999999999999988855443222 244577899999977443
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.4e-05 Score=92.63 Aligned_cols=188 Identities=16% Similarity=0.163 Sum_probs=116.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC--------CcHHHHHHHHHHHh---
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD--------FGKRQIMTKIINSV--- 231 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--------~~~~~~~~~i~~~~--- 231 (883)
-.++||-+..++.|.+++... .-.+.+.++|+.|+||||+|+.+.+.... +..-.....+....
T Consensus 15 FddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 357999999999998888652 23456789999999999999999876521 11111111111110
Q ss_pred -h-CCCCCCCChHHHHHHHHH----HcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 232 -I-GGNHGNLDPDRMQKVLRD----SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 232 -~-~~~~~~~~~~~~~~~l~~----~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
. -........+.+...+.. -..+++-++|||+++.........+...+-......++|++|.+.. +.....
T Consensus 90 viEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl-- 167 (944)
T PRK14949 90 LIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL-- 167 (944)
T ss_pred EEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH--
Confidence 0 000001122222222211 1235677999999988877777777777766556677777665533 322211
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
..+..|++++++.++..+++.+.+-..+.. ...+....|++.++|.|--+..+
T Consensus 168 SRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 168 SRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 123789999999999999998877443222 22355688999999988644433
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=1.3e-05 Score=85.92 Aligned_cols=186 Identities=12% Similarity=0.139 Sum_probs=115.8
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-----Cc---------HHHHHHHH
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-----FG---------KRQIMTKI 227 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-----~~---------~~~~~~~i 227 (883)
....++|-++..+.+...+... .-.+.+.|+|+.|+||||+|+.+.+..-. +. .......+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 3467999999999999988652 34567999999999999999888665411 11 11222222
Q ss_pred HHHhhCC----------C----CCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEE
Q 038265 228 INSVIGG----------N----HGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKI 288 (883)
Q Consensus 228 ~~~~~~~----------~----~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~i 288 (883)
.....++ . ......+++. .+.+++ .+++-++|+|+++..+......+...+.....+..+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 2211000 0 0112234332 333333 346679999999888777777777777654455665
Q ss_pred EEeecChH-HHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 289 LVTTRSNK-VALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 289 ivTtr~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
|++|..+. +..... ..+..+.+.+++.++..+++....... . ...+....+++.++|.|.....+
T Consensus 175 iLit~~~~~llptIr--SRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIR--SRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHH--hhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555432 222221 224789999999999999998743111 1 11344678999999999755444
No 75
>PRK09087 hypothetical protein; Validated
Probab=98.36 E-value=1.2e-05 Score=80.79 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=86.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC--C
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE--D 268 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~--~ 268 (883)
.+.+.|||+.|+|||+|++.+++..... -.+.+.....+...+.+ -+|++||+... +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~-------------------~i~~~~~~~~~~~~~~~--~~l~iDDi~~~~~~ 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL-------------------LIHPNEIGSDAANAAAE--GPVLIEDIDAGGFD 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE-------------------EecHHHcchHHHHhhhc--CeEEEECCCCCCCC
Confidence 3578999999999999999887653211 00010111111111111 37888999543 2
Q ss_pred hhhHHHHHHhcCCCCCCCEEEEeecC---------hHHHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcch
Q 038265 269 PRAWGELKSLLLGGAEGSKILVTTRS---------NKVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNL 339 (883)
Q Consensus 269 ~~~~~~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~ 339 (883)
..++-.+...+.. .|..||+|++. ++....+... ..+++++++.++-.+++.+.+...+...+
T Consensus 103 ~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~~~~~~~~~~l~--- 174 (226)
T PRK09087 103 ETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIFKLFADRQLYVD--- 174 (226)
T ss_pred HHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHHHHHHHcCCCCC---
Confidence 2222223322222 36679998874 3333333332 78999999999999999988854322222
Q ss_pred HHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 340 VKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 340 ~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
.++..-|++++.|..-++..+-..|
T Consensus 175 ~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 175 PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3566778888888777666544433
No 76
>PF13173 AAA_14: AAA domain
Probab=98.33 E-value=2.7e-06 Score=77.63 Aligned_cols=113 Identities=20% Similarity=0.360 Sum_probs=71.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
+++.|.|+.|+||||++++++.+.. .++........ ..+ ..+.+.+....++.+++||+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA------------DPD-LLEYFLELIKPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh------------hhh-hHHHHHHhhccCCcEEEEeh
Confidence 5899999999999999998876532 11111111000 000 23444444445788999999
Q ss_pred CCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHH--cccCC-CCceecCCCChhc
Q 038265 264 VWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIM--GTMRG-TTGYNLQELPYKD 319 (883)
Q Consensus 264 v~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--~~~~~-~~~~~l~~L~~~~ 319 (883)
+... .+|......+.+..+..+|++|+......... ....+ ...+++.||+..|
T Consensus 70 iq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 70 IQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 9654 46777777776655678999999987666331 11111 1357888888766
No 77
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=1.4e-06 Score=91.01 Aligned_cols=280 Identities=18% Similarity=0.215 Sum_probs=169.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc-cC-----------CCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN-DQ-----------KDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKR 256 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~-~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr 256 (883)
...+.|.++|.|||||||++-.+.. .. .+++....+.-++-...+-. ..+.+.....+..+...+|
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~--~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAHAASEYADGVAFVDLAPITDPALVFPTLAGALGLH--VQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHhHhhhcccceeeeeccccCchhHhHHHHHhhcccc--cccchHHHHHHHHHHhhhh
Confidence 3467999999999999999977766 11 34444444444433322111 1122334446667778899
Q ss_pred eEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccCCCCceecCCCChh-cHHHHHHHHHhcCCCC-
Q 038265 257 YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMRGTTGYNLQELPYK-DCLSLFMKCAFKEGKE- 334 (883)
Q Consensus 257 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l~~L~~~-~a~~lf~~~a~~~~~~- 334 (883)
.++|+||..+.- ..-..+...+..+.+.-.|+.|+|..... .++..+.+..|+.. ++.++|...+......
T Consensus 90 ~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 90 ALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV------AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc------cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 999999983211 11122333445555566789999875432 34477888888765 7999998877443332
Q ss_pred -CCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCC-------HHHHHHHHccccccccCCCCCcchHHHHhhcCCChhh
Q 038265 335 -KHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTD-------EHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHL 406 (883)
Q Consensus 335 -~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~-------~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 406 (883)
..........+|.++.+|.|++|...++..+.-.. .+.|..+..- ..............+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHH
Confidence 12233456789999999999999999998865322 1233322221 00011112356788999999999999
Q ss_pred hHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCCCchHHHHHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHH
Q 038265 407 KQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEELEKIGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHD 486 (883)
Q Consensus 407 k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~d 486 (883)
+--|.-++.|..++.... ..|.+.|-.. ....-..+.-+..++++++.......+. ..| +.-+-.+.
T Consensus 242 ~~~~~rLa~~~g~f~~~l----~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~--a~~--Rl~eT~r~ 308 (414)
T COG3903 242 RALFGRLAVFVGGFDLGL----ALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGR--ARY--RLLETGRR 308 (414)
T ss_pred HHHhcchhhhhhhhcccH----HHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhH--HHH--HHHHHHHH
Confidence 999999999988776653 2334433211 1122234555777888888654432221 223 44455555
Q ss_pred HHHHH
Q 038265 487 LALLV 491 (883)
Q Consensus 487 la~~i 491 (883)
|+..+
T Consensus 309 Yalae 313 (414)
T COG3903 309 YALAE 313 (414)
T ss_pred HHHHH
Confidence 55444
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.32 E-value=1.8e-05 Score=85.32 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDR 243 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 243 (883)
.+++|+++.++.+..++.. ...+.+.++|.+|+||||+|+.+.+....-.... ..-.+... .....+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~----~~i~~~~~--~~~~~~~ 84 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRE----NFLELNAS--DERGIDV 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc----ceEEeccc--cccchHH
Confidence 5689999999999998854 2234579999999999999999977641110000 00000000 0011111
Q ss_pred HHHHHHHHc-----C-CCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCceecCCCC
Q 038265 244 MQKVLRDSL-----N-GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTGYNLQELP 316 (883)
Q Consensus 244 ~~~~l~~~l-----~-~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~~~l~~L~ 316 (883)
....+.+.. . ..+-++++|+++.........+...+....+.+++|+++.... +...... ....+++.+++
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~ 162 (319)
T PRK00440 85 IRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLK 162 (319)
T ss_pred HHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH--HhheeeeCCCC
Confidence 112222221 1 3456899999976655555667766665556677887775321 1111111 12468999999
Q ss_pred hhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 317 YKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 317 ~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
+++....+...+...+.... .+....+++.++|.+.-+.
T Consensus 163 ~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 163 KEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999999888755443322 3456788999999876543
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=6.6e-06 Score=92.37 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-------CcHHHHHHHHHHHhhC---
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-------FGKRQIMTKIINSVIG--- 233 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------~~~~~~~~~i~~~~~~--- 233 (883)
++++|-+...+.|..++... .-.+.+.++|++|+||||+|+.+++.... +........+......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 56899999888888888652 23467899999999999999998766521 1110111111110000
Q ss_pred --CCCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHcccC
Q 038265 234 --GNHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMGTMR 305 (883)
Q Consensus 234 --~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~ 305 (883)
........+...+ +.+.+ .+++-++|+|+++......+..+...+....+.+.+|++|... .+..... .
T Consensus 89 el~~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~--S 165 (504)
T PRK14963 89 EIDAASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL--S 165 (504)
T ss_pred EecccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh--c
Confidence 0001122222222 33322 3466689999998777667778887777655566666666543 2222121 1
Q ss_pred CCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 306 GTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 306 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
.+..+++.+++.++..+.+.+.+...+.... .+....|++.++|.+--+.
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2368999999999999999998855543322 3456889999999885443
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=2.1e-05 Score=84.77 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=115.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-----CC-------------CcHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-----KD-------------FGKRQIM 224 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-----~~-------------~~~~~~~ 224 (883)
..+++|-++..+.+.+.+... .-.+.+.++|+.|+||+|+|..+.+.. .. .+.-...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 467999999999999888652 335678999999999999998776543 11 0111112
Q ss_pred HHHHHHhhCC---------CC-----CCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCC
Q 038265 225 TKIINSVIGG---------NH-----GNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEG 285 (883)
Q Consensus 225 ~~i~~~~~~~---------~~-----~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~g 285 (883)
..+.....++ .. .....+++ +.+.+.+ .+++-++|+|+++..+......+...+-....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 2221111110 00 11223332 2233333 246679999999888877777777777665567
Q ss_pred CEEEEeecChHHHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 286 SKILVTTRSNKVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 286 s~iivTtr~~~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
+.+|++|.+....... ....+..+.+.+++.++..+++..... .. .+ .....+++.++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpt-i~SRc~~i~l~~l~~~~i~~~L~~~~~---~~-~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPT-IRSRCRKLRLRPLAPEDVIDALAAAGP---DL-PD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHH-hhccceEEECCCCCHHHHHHHHHHhcc---cC-CH---HHHHHHHHHcCCCHHHHHHH
Confidence 7788888776432111 123347899999999999999987541 11 11 12267899999999865544
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.1e-05 Score=90.80 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=113.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhC-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIG- 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~- 233 (883)
-.+++|-+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+... .++.-.....+-..-..
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 357899999999999888542 2346688999999999999999976431 11111111111110000
Q ss_pred ----CCCCCCChHHHHHH---HHH-HcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHccc
Q 038265 234 ----GNHGNLDPDRMQKV---LRD-SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMGTM 304 (883)
Q Consensus 234 ----~~~~~~~~~~~~~~---l~~-~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~ 304 (883)
........++.... +.. -..+++-++|+|+++..+...+..+...+-.....+.+|++|.+. .+.... .
T Consensus 90 lieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI--~ 167 (546)
T PRK14957 90 LIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTI--L 167 (546)
T ss_pred eEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhH--H
Confidence 00011122222222 221 123566799999998777777777887777665667666655543 222121 1
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch-HHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL-AVRTV 360 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 360 (883)
..+..+++.+++.++..+.+.+.+...+... ..+....|++.++|.+- |+..+
T Consensus 168 SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 168 SRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred HheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2237899999999998888887664433221 23455788999999664 44444
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.3e-05 Score=90.16 Aligned_cols=189 Identities=17% Similarity=0.196 Sum_probs=113.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~~ 234 (883)
-.+++|.+..++.+.+++... .-.+.+.++|+.|+||||+|+.+.+... .++.......+.......
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 357899999999999888552 2346789999999999999999876541 122222222222111100
Q ss_pred -----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHccc
Q 038265 235 -----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMGTM 304 (883)
Q Consensus 235 -----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~ 304 (883)
.......+++...+... ..+++-++|+|+++..+...+..+...+......+.+|++|... .+.....
T Consensus 90 iieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~-- 167 (605)
T PRK05896 90 IVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII-- 167 (605)
T ss_pred eEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH--
Confidence 00112233332222211 12334469999998777667777777776655566666555443 3322211
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch-HHHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL-AVRTVG 361 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 361 (883)
..+..+++.++++++....+...+...+.... .+.+..+++.++|.+- |+..+-
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 12368999999999999888887744332222 2456788999999664 444433
No 83
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=9.8e-06 Score=86.59 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=113.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~~i~~~~~~~~~ 236 (883)
.+++|-+.-.+.+..++... .-.+...++|+.|+||||+|+.++... ...+...+ .....
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~--------~~~~~ 70 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF--------KPINK 70 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEe--------ccccC
Confidence 46889888889899888542 335688999999999999999887643 01111000 00011
Q ss_pred CCCChHHHHHHHHH----HcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccCCCCceec
Q 038265 237 GNLDPDRMQKVLRD----SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMRGTTGYNL 312 (883)
Q Consensus 237 ~~~~~~~~~~~l~~----~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l 312 (883)
.....+++.+.+.. -..+++=++|+|+++..+...+..+...+....+++.+|++|.+.+.... .....+..+.+
T Consensus 71 ~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~-TI~SRc~~~~~ 149 (313)
T PRK05564 71 KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILD-TIKSRCQIYKL 149 (313)
T ss_pred CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcH-HHHhhceeeeC
Confidence 22334444433331 12345668888888777777888899999887889999998876542211 00122368999
Q ss_pred CCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 313 QELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 313 ~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
.++++++....+..... + .. .+.+..++..++|.|..+..
T Consensus 150 ~~~~~~~~~~~l~~~~~--~--~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 150 NRLSKEEIEKFISYKYN--D--IK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred CCcCHHHHHHHHHHHhc--C--CC---HHHHHHHHHHcCCCHHHHHH
Confidence 99999998887765431 1 11 23356789999998865443
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.3e-05 Score=89.37 Aligned_cols=189 Identities=17% Similarity=0.185 Sum_probs=109.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhC-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIG- 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~- 233 (883)
-+++||.+...+.+...+... .-.+.+.++|++|+||||+|+.+.+... ++..-.....+......
T Consensus 13 ~~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 357999988888887777542 2235689999999999999999976541 11111111111110000
Q ss_pred ----CCCCCCChHHHHHHHHHH-----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHcc
Q 038265 234 ----GNHGNLDPDRMQKVLRDS-----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMGT 303 (883)
Q Consensus 234 ----~~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~ 303 (883)
........+.+. .+.+. ..+++-++|+|+++.......+.+...+........+|++|.++ .+.....
T Consensus 88 v~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~- 165 (472)
T PRK14962 88 VIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTII- 165 (472)
T ss_pred cEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHh-
Confidence 000111222222 22222 23466799999997655445556666665544445555555442 3322222
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCC-chHHHHHHh
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGI-PLAVRTVGS 362 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 362 (883)
..+..+++.+++.++....+...+...+...+ .+....|++.++|. +.|+..+-.
T Consensus 166 -SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 166 -SRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred -cCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 22367899999999998888887754433222 24567788877654 566666654
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.5e-05 Score=85.41 Aligned_cols=185 Identities=21% Similarity=0.232 Sum_probs=116.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------CCCcHHHHHHHHHHHhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------KDFGKRQIMTKIINSVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~~~~~~i~~~~~~~ 234 (883)
-.++||-+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+.+.. .+++.-.....|......+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 467999999888888877542 224588999999999999999887632 2223323333333221110
Q ss_pred -----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHHHHccc
Q 038265 235 -----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVALIMGTM 304 (883)
Q Consensus 235 -----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~ 304 (883)
.......++....+... ..+++-++|+|+++..+......+...+....+.+++|++|.+ ..+.....
T Consensus 87 v~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~-- 164 (491)
T PRK14964 87 VIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTII-- 164 (491)
T ss_pred EEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHH--
Confidence 01122333333332221 1345668999999877766777787777766667777776644 33332221
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
..+..+++.+++.++..+.+...+...+.... .+....|++.++|.+..+
T Consensus 165 SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 165 SRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred HhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 12367899999999999999988755443322 245578999999877543
No 86
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=5.5e-06 Score=88.31 Aligned_cols=32 Identities=28% Similarity=0.608 Sum_probs=18.7
Q ss_pred CCccEEeecCCCCCccCCccCCCCccccccccccc
Q 038265 763 KTLQMLTIGDCPNFMALPRSLKDLEALENLLITSC 797 (883)
Q Consensus 763 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c 797 (883)
++|++|++++|..+. +|..+. .+|+.|.++.|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 467777777766442 343332 46777777654
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.1e-05 Score=92.09 Aligned_cols=188 Identities=13% Similarity=0.143 Sum_probs=115.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhC-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIG- 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~- 233 (883)
-.++||-+..++.|...+... .-.+.+.++|+.|+||||+|+.+.+... .++.-.....|...-..
T Consensus 15 f~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCC
Confidence 467999999999888888652 2345678999999999999999976541 12222222222211000
Q ss_pred ----CCCCCCChHHHHHHHHH----HcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 234 ----GNHGNLDPDRMQKVLRD----SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 234 ----~~~~~~~~~~~~~~l~~----~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
........++..+.+.. -..+++-++|+|+++.........+...+-......++|++|.+.. +.....
T Consensus 90 ~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~-- 167 (647)
T PRK07994 90 LIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL-- 167 (647)
T ss_pred ceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH--
Confidence 00001223333322222 1245667999999988777777777777766555666666666543 221111
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
..+..|.+.+++.++..+.+.+.+...+.. ...+....|++.++|.+--...+
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 124789999999999999988876433322 12244578999999988644333
No 88
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=6.9e-06 Score=77.24 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=65.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCC-------cHHHHHHHHHHHhhCCCCCCC
Q 038265 167 IGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDF-------GKRQIMTKIINSVIGGNHGNL 239 (883)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~ 239 (883)
+|++..+..+...+.. ...+.+.|+|++|+|||++++.+++..... +.................
T Consensus 1 ~~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh---
Confidence 4788888888888754 234588999999999999999998764110 111111100000000000
Q ss_pred ChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCC------CCCCEEEEeecChH
Q 038265 240 DPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG------AEGSKILVTTRSNK 296 (883)
Q Consensus 240 ~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 296 (883)
............++.++|+||++.........+...+... ..+.+||+||....
T Consensus 72 ---~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112233457789999999754222233333333322 35778888887643
No 89
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.24 E-value=6.4e-06 Score=83.57 Aligned_cols=128 Identities=20% Similarity=0.355 Sum_probs=81.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHH-----HHcCCCceEEEEeC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLR-----DSLNGKRYLLVMDD 263 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~-----~~l~~kr~LlvlDd 263 (883)
.+...+.+||++|+||||||+.+.+.....+.+ +..-........++...+. ..+.++|.+|++|.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~Syr---------fvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDE 230 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYR---------FVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDE 230 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceE---------EEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHH
Confidence 567788999999999999999998766332210 0000111112222222222 23567899999999
Q ss_pred CCCCChhhHHHHHHhcCCCCCCCEEEE--eecChHHHHHHcccCCCCceecCCCChhcHHHHHHHHH
Q 038265 264 VWNEDPRAWGELKSLLLGGAEGSKILV--TTRSNKVALIMGTMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 264 v~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
|...+. .+-..++|.-..|+-++| ||.++...........+.++.++.|+.++-..++.+..
T Consensus 231 iHRFNk---sQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 231 IHRFNK---SQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhhhh---hhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 965432 233345666667876666 77776554333333445889999999999999888744
No 90
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.2e-05 Score=85.29 Aligned_cols=186 Identities=15% Similarity=0.169 Sum_probs=112.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC----------------CcHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD----------------FGKRQIMTK 226 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----------------~~~~~~~~~ 226 (883)
-.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+...- .+.-.....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 357899999888888888542 23456889999999999999988665411 111111111
Q ss_pred HHHHhhCC-----CCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-h
Q 038265 227 IINSVIGG-----NHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-N 295 (883)
Q Consensus 227 i~~~~~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~ 295 (883)
+....... .......+++.+. .+.+ .+++-++|+|+++......+..+...+....+.+.+|++|.. .
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11110000 0011123333332 2333 345668899999877766788888887766667776666543 3
Q ss_pred HHHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 296 KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 296 ~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
.+...... ....+++.++++++..+.+...+-..+... ..+.+..|++.++|.+--+..
T Consensus 169 kl~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 169 KIPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HhHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 33322111 125688999999999888887764333221 235668899999997754433
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.23 E-value=3.2e-05 Score=84.83 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=114.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~~ 234 (883)
-.+++|.+..++.+.+++... .-.+.+.++|++|+||||+|+.+..... .++.-.....+.......
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 356899999999999988652 2346788999999999999988865531 111111111111110000
Q ss_pred -----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 235 -----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 235 -----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
.......+...+.+... ..+++-++|+|+++.........+...+....+.+.+|++|.+.. +......
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s- 166 (355)
T TIGR02397 88 VIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS- 166 (355)
T ss_pred EEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh-
Confidence 00111222222222211 224556899999976655566677777765556677777776544 2222211
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHh
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGS 362 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 362 (883)
....+++.++++++..+.+...+...+...+ .+.+..+++.++|.|..+.....
T Consensus 167 -r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 167 -RCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred -heeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHHH
Confidence 1257889999999999998887754443222 25667889999999876655443
No 92
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.5e-06 Score=67.41 Aligned_cols=59 Identities=31% Similarity=0.438 Sum_probs=39.9
Q ss_pred CcccEEEecCcccccccc-ccCCCCCceEecccCCccccccCccccCCCcccEeecCCCC
Q 038265 560 KSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCL 618 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 618 (883)
++|++|++++|.+..+|. .+..+++|++|++++|.....-|..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 457777777777777764 46677777777777766443344566777777777777664
No 93
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=3.8e-07 Score=101.66 Aligned_cols=126 Identities=26% Similarity=0.317 Sum_probs=64.7
Q ss_pred CCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEe
Q 038265 559 SKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 638 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 638 (883)
+..++.+.+..+.+..+-..++.+.+|..|++.+|. +..+...+..+++|++|++++|.+ ..+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I-~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKI-TKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccccc-cccc-chhhccchhhhee
Confidence 344444445555555433445555666666666554 444443345566666666665432 2221 3444555666666
Q ss_pred CCccccccccccCCCCCCCeEEeecCCCccccc-cccccCcccceeeecccc
Q 038265 639 TTKQKSLLESGIGCLSSLRFLMISDCGNLEYLF-EDIDQLSVLRSLVINSCP 689 (883)
Q Consensus 639 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 689 (883)
.+|.+..+. .+..+++|+.+++++|.....-+ . +..+.+|+.+.+.+|.
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 666655442 34446666666666654332111 1 3556666666666544
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=4.4e-05 Score=87.15 Aligned_cols=187 Identities=17% Similarity=0.223 Sum_probs=115.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-------------CCcHHHHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-------------DFGKRQIMTKIIN 229 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-------------~~~~~~~~~~i~~ 229 (883)
-+++||-+..++.|.+++... .-.+.+.++|+.|+||||+|+.+.+... .++.......|-.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 357999888888888888652 3346789999999999999998855431 1222222222211
Q ss_pred HhhCC-----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHH
Q 038265 230 SVIGG-----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVAL 299 (883)
Q Consensus 230 ~~~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 299 (883)
.-..+ .......++..+.+... ..++.-++|||+++..+...+..+...+.......++|++|.+ ..+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 11000 00112233333333221 1234558999999888877777777777665556677766654 33322
Q ss_pred HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 300 IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 300 ~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
.. ...+..+++++++.++..+.+.+.+...+.... .+....|++.++|.+--+..
T Consensus 170 TI--lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TV--LSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HH--HHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 21 122378999999999999999887754443322 24567888999987744433
No 95
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.20 E-value=1.8e-06 Score=84.88 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=32.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.||||+++++++...+... .....+.+.|+|++|+|||+|.++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999521 23556899999999999999999886654
No 96
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.20 E-value=5.8e-06 Score=90.63 Aligned_cols=183 Identities=19% Similarity=0.129 Sum_probs=99.1
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
.+++.|+++.++++.+.+..+.. -+-...+-|.++|++|+|||++|+++++.....-..-...++.....+.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~- 208 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGE- 208 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccc-
Confidence 45789999999999887633210 0113356789999999999999999988653110000011111111111
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCC-----------ChhhHHHHHHhc---CC--CCCCCEEEEeecChHHHH
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE-----------DPRAWGELKSLL---LG--GAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~~~~~~~l~~~l---~~--~~~gs~iivTtr~~~v~~ 299 (883)
........+...-...+.+|+||+++.. +......+...+ .. ...+..||.||...+...
T Consensus 209 ----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 209 ----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD 284 (389)
T ss_pred ----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence 1111222222222356789999999642 011111222222 21 123556777777644322
Q ss_pred HHcc--cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 300 IMGT--MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 300 ~~~~--~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
..-. ..-...+.+...+.++..++|..+..+......-++ ..+++.+.|.-
T Consensus 285 ~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 285 PAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred HHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 2111 112357899999999999999988744332211222 45666666643
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.18 E-value=3.1e-05 Score=78.76 Aligned_cols=155 Identities=20% Similarity=0.147 Sum_probs=84.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChh
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPR 270 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~ 270 (883)
...+.|+|.+|+|||+||+.+++.....+ ......+.......+ ... ...-++|+||+...+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~--------------~~~~~i~~~~~~~~~-~~~-~~~~~liiDdi~~l~~~ 105 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGG--------------RNARYLDAASPLLAF-DFD-PEAELYAVDDVERLDDA 105 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC--------------CcEEEEehHHhHHHH-hhc-ccCCEEEEeChhhcCch
Confidence 45789999999999999999987531000 000000000110111 111 23447899999654332
Q ss_pred hHHHHHHhcCCC-CCCC-EEEEeecChHHHHH-----HcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHH
Q 038265 271 AWGELKSLLLGG-AEGS-KILVTTRSNKVALI-----MGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIG 343 (883)
Q Consensus 271 ~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~~-----~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~ 343 (883)
.-+.+...+... ..+. .||+|++....... .........+++.++++++-..++.+.+...+.. --.+..
T Consensus 106 ~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~---l~~~al 182 (227)
T PRK08903 106 QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ---LADEVP 182 (227)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHH
Confidence 222333333221 1233 36666664322110 0011112578999999987777776654322222 223566
Q ss_pred HHHHHHhCCCchHHHHHHhhh
Q 038265 344 EKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 344 ~~i~~~c~glPLai~~~~~~L 364 (883)
..+++.+.|.+..+..+-..+
T Consensus 183 ~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 183 DYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhccCCHHHHHHHHHHH
Confidence 788889999999888777665
No 98
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=4.7e-06 Score=76.60 Aligned_cols=103 Identities=23% Similarity=0.290 Sum_probs=68.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC------------------CCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ------------------KDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDS 251 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 251 (883)
+.+++.|+|.+|+|||++++++.+.. ...+...+...++..+........+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35689999999999999999987743 112577888888888865554445677777888887
Q ss_pred cCCCc-eEEEEeCCCCC-ChhhHHHHHHhcCCCCCCCEEEEeecC
Q 038265 252 LNGKR-YLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRS 294 (883)
Q Consensus 252 l~~kr-~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 294 (883)
+...+ .+||+|+++.- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76654 59999999654 4334444443333 567788887764
No 99
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.4e-05 Score=86.95 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=114.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------CCCcHHHHHHHHHHHhhC-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------KDFGKRQIMTKIINSVIG- 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~~~~~~i~~~~~~- 233 (883)
-.++||-+..++.+.+++... .-.+.+.++|+.|+||||+|+.+.+.. .+++.-.....|...-..
T Consensus 15 f~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 357999999999999999652 234578899999999999999887654 112222222222111100
Q ss_pred ----CCCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 234 ----GNHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 234 ----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
........++..+.+... ..++.-++|+|+++..+......+...+....+.+++|++|.+.. +.... .
T Consensus 90 ~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI--~ 167 (509)
T PRK14958 90 LFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV--L 167 (509)
T ss_pred EEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH--H
Confidence 001122333333322221 134566899999988777777777777776666777777665532 22111 1
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
..+..+++.+++.++..+.+...+-..+.... .+....|++.++|.+.-+.
T Consensus 168 SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 168 SRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHH
Confidence 12367889999999988877777644433222 2345678889999875443
No 100
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.17 E-value=2.2e-05 Score=90.85 Aligned_cols=188 Identities=21% Similarity=0.239 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-----------C----------CcHHH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-----------D----------FGKRQ 222 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-----------~----------~~~~~ 222 (883)
++++|++..+..+...+.. .....+.|+|++|+||||+|+.+++... . .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 5689999999998887743 2345799999999999999999875331 0 01111
Q ss_pred HHHHHH---------------HHhh-------------C-----CCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh
Q 038265 223 IMTKII---------------NSVI-------------G-----GNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP 269 (883)
Q Consensus 223 ~~~~i~---------------~~~~-------------~-----~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~ 269 (883)
+...++ .... + +.....+ ...+..+.+.+..+++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 111110 0000 0 0011111 2356677788888888888888877777
Q ss_pred hhHHHHHHhcCCCCCCCEEEE--eecChHHHH-HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 038265 270 RAWGELKSLLLGGAEGSKILV--TTRSNKVAL-IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKI 346 (883)
Q Consensus 270 ~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~-~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i 346 (883)
..|+.+...+....+...|+| ||++..... .... ....+.+.+++.+|.++++.+.+...+.... .++...|
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L 381 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELI 381 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 778888776666665555555 566443211 1111 1246788999999999999988743221111 2344555
Q ss_pred HHHhCCCchHHHHHHhh
Q 038265 347 MEKCRGIPLAVRTVGSL 363 (883)
Q Consensus 347 ~~~c~glPLai~~~~~~ 363 (883)
.+++..-+-|+..++..
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 55554445566555444
No 101
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=8.5e-06 Score=86.88 Aligned_cols=137 Identities=22% Similarity=0.388 Sum_probs=89.1
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
+..+++++.|++++|.+..+|. + ..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 5557899999999999999983 2 3479999999988888888755 368999999998777777754 566
Q ss_pred EEeCCccccccccccCCC-CCCCeEEeecCCCcc--ccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccC
Q 038265 636 FVVTTKQKSLLESGIGCL-SSLRFLMISDCGNLE--YLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 636 L~l~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~ 712 (883)
|++..+....+ ..+ ++|+.|.+.+++... .++. .-.++|+.|++++|.... +|..+. .+|+.|.++.+
T Consensus 117 L~L~~n~~~~L----~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSI----KNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCccc----ccCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 66665543221 122 356677664432111 1110 012578888888777542 343322 47777777654
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=7.4e-05 Score=81.24 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHHccCC-------CCcHHHHHHHHHHHhh
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDG----ESETVSVIPIVGIGGLGKTALAKLVYNDQK-------DFGKRQIMTKIINSVI 232 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-------~~~~~~~~~~i~~~~~ 232 (883)
++++|-+..++.+...+...... ...-.+.+.++|++|+|||++|+.+..... ..+.-.....+.....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46899999999999988653200 001357789999999999999998865431 1111111112211111
Q ss_pred CC------CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHH
Q 038265 233 GG------NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIM 301 (883)
Q Consensus 233 ~~------~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~ 301 (883)
++ .......+++.+.+... ..+++-++|+|+++..+......+...+-...++..+|++|.+.. +....
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 00 01112333333322221 124555888899988776666667776666566777777777643 22222
Q ss_pred cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 302 GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 302 ~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
. ..+..+.+.+++.++..+.+.... +. . .+.+..++..++|.|.....+
T Consensus 165 r--SRc~~i~f~~~~~~~i~~~L~~~~---~~--~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 165 R--SRCRHVALRTPSVEAVAEVLVRRD---GV--D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred H--hhCeEEECCCCCHHHHHHHHHHhc---CC--C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 224789999999999988887432 11 1 244678899999999644333
No 103
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.2e-05 Score=87.78 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=116.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIG 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~ 233 (883)
-.++||-+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+... .++.......+......
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCC
Confidence 357999999999998888652 2346778999999999999998876541 22223333333322111
Q ss_pred C-----CCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHc
Q 038265 234 G-----NHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMG 302 (883)
Q Consensus 234 ~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~ 302 (883)
+ .......+.+.+.+ +.+ .+++-++|+|+++.......+.+...+......+.+|++|.+. .+.....
T Consensus 90 d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 90 DVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred eEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 0 00122333333222 222 2456689999997766666667777766655667777666543 2222221
Q ss_pred ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHh
Q 038265 303 TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGS 362 (883)
Q Consensus 303 ~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 362 (883)
..+..+++..++.++....+...+...+.... .+.+..|++.++|.+..+...-.
T Consensus 169 --SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 169 --SRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred --hccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 12367889999999988888887754433222 25567899999998865554433
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=8.9e-05 Score=84.24 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=111.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHh---
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSV--- 231 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~--- 231 (883)
-.++||-+..++.+..++... .-.+.+.++|+.|+||||+|+.+.+... +++.-.....+-..-
T Consensus 15 f~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 357899999999999888652 2346778999999999999999876541 121111111111100
Q ss_pred -hC-CCCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 232 -IG-GNHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 232 -~~-~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
.. ........+.+.+.+... ..+++-++|+|+++.........+...+......+.+|++|.++. +.... .
T Consensus 90 ~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI--~ 167 (527)
T PRK14969 90 LIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV--L 167 (527)
T ss_pred eeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH--H
Confidence 00 001122333333332221 135667999999987776666777777766555677776665532 22111 1
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL 355 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (883)
..+..+++.+++.++..+.+.+.+...+.. ...+....|++.++|.+-
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 168 SRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 112678999999999998888776443322 122455788999999775
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.09 E-value=2.8e-05 Score=77.73 Aligned_cols=175 Identities=13% Similarity=0.131 Sum_probs=109.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC--CcHHHHHHHHHHHhhCCCCCCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD--FGKRQIMTKIINSVIGGNHGNLD 240 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~ 240 (883)
.++++|-+..+..+.+.+.. ........+|++|.|||+-|+.+...... .-...++. +........+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~-----lnaSderGis 103 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE-----LNASDERGIS 103 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh-----hccccccccc
Confidence 46789999999888888865 34678899999999999999988765421 00001110 0000000000
Q ss_pred h--HHHH--HHHHHHc---C---CCc-eEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHH-HHHcccCCCC
Q 038265 241 P--DRMQ--KVLRDSL---N---GKR-YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGTT 308 (883)
Q Consensus 241 ~--~~~~--~~l~~~l---~---~kr-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~ 308 (883)
. +... ..+.... . .++ -.+|||+++....+.|..+...+......++.|+.+..-... .... ..+.
T Consensus 104 vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~--SRC~ 181 (346)
T KOG0989|consen 104 VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV--SRCQ 181 (346)
T ss_pred chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH--hhHH
Confidence 0 0000 0000001 0 122 378999999999999999999988877777766665542221 1111 1126
Q ss_pred ceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCC
Q 038265 309 GYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGI 353 (883)
Q Consensus 309 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 353 (883)
.|..++|..++...-+...+-..+.+.+. +..+.|++.++|-
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGD 223 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCc
Confidence 78999999999999999888666554332 4557888988884
No 106
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.00011 Score=82.36 Aligned_cols=188 Identities=14% Similarity=0.146 Sum_probs=116.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhh--
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVI-- 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~-- 232 (883)
-.++||-+...+.+...+... .-.+...++|+.|+||||+|+.+.+... ++..-.....+.....
T Consensus 13 fdeiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 357999999999998888542 3356778999999999999998766531 1111111111111110
Q ss_pred ---CCCCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 233 ---GGNHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 233 ---~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
.........+.+.+.+... ..+++-++|+|+++..+......+...+-...+.+++|++|.+.. +.....
T Consensus 88 v~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~-- 165 (535)
T PRK08451 88 IIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL-- 165 (535)
T ss_pred EEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH--
Confidence 0011111234444444321 124566889999988777677777777766566777777776642 111111
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
..+..+++.+++.++..+.+...+...+.... .+.+..|++.++|.+.-+...
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 12368999999999999988887754443322 356688999999988554444
No 107
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=4.1e-06 Score=64.94 Aligned_cols=59 Identities=29% Similarity=0.464 Sum_probs=35.0
Q ss_pred CCceEecccCCccccccC-ccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcc
Q 038265 583 RQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 642 (883)
Q Consensus 583 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 642 (883)
++|++|++++|. +..+| ..+.++++|++|++++|.....-|..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356677777664 44444 355666777777776654443334455666666666666654
No 108
>PRK08727 hypothetical protein; Validated
Probab=98.07 E-value=7e-05 Score=76.02 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=82.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHH---HHHcCCCceEEEEeCCCCCC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVL---RDSLNGKRYLLVMDDVWNED 268 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l---~~~l~~kr~LlvlDdv~~~~ 268 (883)
..+.|+|..|+|||+|++++++....-+.... -.+..+....+ .+.+ .+--+||+||+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~--------------y~~~~~~~~~~~~~~~~l-~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSA--------------YLPLQAAAGRLRDALEAL-EGRSLVALDGLESIA 106 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEE--------------EEeHHHhhhhHHHHHHHH-hcCCEEEEeCccccc
Confidence 46999999999999999998765311000000 00011111111 1122 234599999996432
Q ss_pred -hhhHHH-HHHhcCC-CCCCCEEEEeecCh---------HHHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCC
Q 038265 269 -PRAWGE-LKSLLLG-GAEGSKILVTTRSN---------KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKH 336 (883)
Q Consensus 269 -~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~ 336 (883)
...|.. +...+.. ...|..||+||+.. ++...+.. ...+++++++.++-.+++.+.+...+...
T Consensus 107 ~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~---~~~~~l~~~~~e~~~~iL~~~a~~~~l~l- 182 (233)
T PRK08727 107 GQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ---CIRIGLPVLDDVARAAVLRERAQRRGLAL- 182 (233)
T ss_pred CChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc---CceEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 122332 2222211 12356799999852 22222212 26899999999999999998775433222
Q ss_pred cchHHHHHHHHHHhCCCchHH
Q 038265 337 PNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 337 ~~~~~~~~~i~~~c~glPLai 357 (883)
-.+...-|++.+.|-.-++
T Consensus 183 --~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 183 --DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred --CHHHHHHHHHhCCCCHHHH
Confidence 2355677888887766554
No 109
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00013 Score=83.66 Aligned_cols=183 Identities=15% Similarity=0.173 Sum_probs=110.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC----------------CcHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD----------------FGKRQIMTK 226 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----------------~~~~~~~~~ 226 (883)
-.++||-+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+...- ++.-.....
T Consensus 15 f~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 357999999999888887542 33466889999999999999888665411 111111111
Q ss_pred HHHHhhCC-----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hH
Q 038265 227 IINSVIGG-----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NK 296 (883)
Q Consensus 227 i~~~~~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 296 (883)
+...-... .......+++...+... ..+++-++|+|+++.........+...+......+.+|++|.+ ..
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11110000 00112234444333222 2345557899999877766677787777765556666655543 33
Q ss_pred HHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch
Q 038265 297 VALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL 355 (883)
Q Consensus 297 v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (883)
+..... ..+..+++.+++.++....+...+...+.... .+.+..|++.++|..-
T Consensus 170 Ll~TI~--SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 170 IPATIA--SRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMR 223 (620)
T ss_pred hhHHHH--hhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHH
Confidence 322211 22368999999999988888876644332222 2456789999999654
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00013 Score=83.52 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=116.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-------------CCcHHHHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-------------DFGKRQIMTKIIN 229 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-------------~~~~~~~~~~i~~ 229 (883)
-.++||.+..++.|.+.+... .-.+-+.++|+.|+||||+|+.+.+... .++.......+..
T Consensus 23 f~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 457999999999999988652 3355788999999999999999977541 1111111222222
Q ss_pred HhhCC-----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeec-ChHHHH
Q 038265 230 SVIGG-----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTR-SNKVAL 299 (883)
Q Consensus 230 ~~~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~ 299 (883)
....+ .......+++.+.+... ..+++-++|+|+++.........+...+....+++.+|++|. ...+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 11110 00112233333322211 124555799999987776667777777766556777766553 333332
Q ss_pred HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 300 IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 300 ~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
... ..+..+++..++.++....+.+.+...+.... .+....|++.++|.+.-+...
T Consensus 178 tI~--SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 178 TVL--SRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHH--hheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 221 12368999999999999999888754443322 245678899999988655443
No 111
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.04 E-value=0.00012 Score=71.90 Aligned_cols=154 Identities=15% Similarity=0.137 Sum_probs=92.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhh------CCCCCCCChHHHHHHHHHH----c
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVI------GGNHGNLDPDRMQKVLRDS----L 252 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~l~~~----l 252 (883)
.+.+.++|+.|+||||+|+.+.+... ....-.....+...-. .........+...+.+... .
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 46899999999999999988865531 1111111111111000 0000112333443333221 1
Q ss_pred CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHcccCCCCceecCCCChhcHHHHHHHHHhcC
Q 038265 253 NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKE 331 (883)
Q Consensus 253 ~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~ 331 (883)
.+.+-++|+|+++.......+.+...+....+.+.+|++|++. .+..... .....+++.+++.++..+.+.+.
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~--sr~~~~~~~~~~~~~~~~~l~~~---- 167 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR--SRCQVLPFPPLSEEALLQWLIRQ---- 167 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH--hhcEEeeCCCCCHHHHHHHHHHc----
Confidence 3456689999998777666777888777666677777777654 2222111 12368999999999988888776
Q ss_pred CCCCCcchHHHHHHHHHHhCCCch
Q 038265 332 GKEKHPNLVKIGEKIMEKCRGIPL 355 (883)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~c~glPL 355 (883)
+. . .+.+..|++.++|.|.
T Consensus 168 gi--~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 168 GI--S---EEAAELLLALAGGSPG 186 (188)
T ss_pred CC--C---HHHHHHHHHHcCCCcc
Confidence 11 1 2557899999999885
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=6.9e-05 Score=84.92 Aligned_cols=190 Identities=14% Similarity=0.205 Sum_probs=116.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhCC-
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIGG- 234 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~~- 234 (883)
.+++|-+..++.|...+... .-.+.+.++|+.|+||||+|+.+.+... .++.-.....+.......
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 57899888888888877542 2246788999999999999998876652 222222222332211100
Q ss_pred ----CCCCCChHHHHHHHHHH-----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHHHHccc
Q 038265 235 ----NHGNLDPDRMQKVLRDS-----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVALIMGTM 304 (883)
Q Consensus 235 ----~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~ 304 (883)
.......+.... +.+. ..+++-++|+|+++..+......+...+........+|++|.+ ..+.....
T Consensus 91 ~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~-- 167 (624)
T PRK14959 91 VEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV-- 167 (624)
T ss_pred EEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH--
Confidence 001112232222 2222 2356679999999877766677777777554445566666655 33332211
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc-hHHHHHHhhh
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP-LAVRTVGSLL 364 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~L 364 (883)
..+..+++.+++.++..+.+...+...+.... .+.+..|++.++|.+ .|+..+...+
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11267899999999999888887754433222 245678889999965 6777666544
No 113
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.03 E-value=5.7e-05 Score=76.79 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCC------C-cHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKD------F-GKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~------~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
...+.|+|++|+|||+|++.+++.... | ...... .... .+.+.+.+ --++++||
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~--------------~~~~----~~~~~~~~-~dlliiDd 105 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA--------------WFVP----EVLEGMEQ-LSLVCIDN 105 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh--------------hhhH----HHHHHhhh-CCEEEEeC
Confidence 357899999999999999998765310 1 000000 0001 11222221 24899999
Q ss_pred CCCCC-hhhHHHHH-HhcCCC-CCC-CEEEEeecCh---------HHHHHHcccCCCCceecCCCChhcHHHHHHHHHhc
Q 038265 264 VWNED-PRAWGELK-SLLLGG-AEG-SKILVTTRSN---------KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFK 330 (883)
Q Consensus 264 v~~~~-~~~~~~l~-~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~ 330 (883)
+.... ...|+... ..+... ..| .++|+||+.+ +....+... .+++++++++++-.+++.+++..
T Consensus 106 i~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g---~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 106 IECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG---QIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC---ceeeecCCCHHHHHHHHHHHHHH
Confidence 96532 12344322 222211 123 4799999854 233333332 68999999999999999886744
Q ss_pred CCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 331 EGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
.+... -.++..-|++++.|..-++..+-..+
T Consensus 183 ~~~~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 183 RGFEL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred cCCCC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 33222 23566788888888776665554443
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00016 Score=85.65 Aligned_cols=184 Identities=16% Similarity=0.187 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhC--
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIG-- 233 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~-- 233 (883)
.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+... .++.-.....+...-..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 57999999999999988652 2346789999999999999999876551 12221222222211000
Q ss_pred -----CCCCCCChHHHHHHHHHH-----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHc
Q 038265 234 -----GNHGNLDPDRMQKVLRDS-----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMG 302 (883)
Q Consensus 234 -----~~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~ 302 (883)
+.......+++.+ +++. ..+++-++|||+++......+..|...+..-...+.+|++|.+. .+...+.
T Consensus 90 dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr 168 (824)
T PRK07764 90 DVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR 168 (824)
T ss_pred cEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH
Confidence 0001112333333 2222 23455688999998888777778888887766677777666543 3332222
Q ss_pred ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 303 TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 303 ~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
..+..|++..++.++..+++.+.+-..+.... .+....|++.++|.+..+.
T Consensus 169 --SRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 169 --SRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred --hheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 22378999999999988888876644333212 2345778999999884433
No 115
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.8e-06 Score=96.38 Aligned_cols=128 Identities=30% Similarity=0.351 Sum_probs=88.8
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
+..+.+|..|++.+|.+..+...+..+++|++|++++|. +..+.. +..++.|+.|++++|.. ..+ ..+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNLI-SDI-SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCcc-hhc-cCCccchhhhc
Confidence 566788888888888888876657788888999998876 666654 67777888888888643 333 25556888888
Q ss_pred EEeCCccccccccc-cCCCCCCCeEEeecCCCccccccccccCcccceeeecccc
Q 038265 636 FVVTTKQKSLLESG-IGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCP 689 (883)
Q Consensus 636 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 689 (883)
+++++|.+..+... ...+.+|+.+.+.+|.... ...+..+..+..+++..|.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence 88888888866543 4777888888888765322 2233344444444554443
No 116
>PRK06620 hypothetical protein; Validated
Probab=97.97 E-value=0.00011 Score=73.13 Aligned_cols=138 Identities=14% Similarity=0.044 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhh
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRA 271 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~ 271 (883)
+.+.|||++|+|||+|++.+.+....+-.. .... . .+.. +..-++++||++......
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~------------~~~~---~-------~~~~-~~~d~lliDdi~~~~~~~ 101 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK------------DIFF---N-------EEIL-EKYNAFIIEDIENWQEPA 101 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc------------hhhh---c-------hhHH-hcCCEEEEeccccchHHH
Confidence 578999999999999999987765321100 0000 0 0111 233578899996322111
Q ss_pred HHHHHHhcCCCCCCCEEEEeecChHH-------HHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHH
Q 038265 272 WGELKSLLLGGAEGSKILVTTRSNKV-------ALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGE 344 (883)
Q Consensus 272 ~~~l~~~l~~~~~gs~iivTtr~~~v-------~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~ 344 (883)
...+...+. ..|..||+|++.+.. ...+... .++++++++.++-.+++.+.+...+... -.++..
T Consensus 102 lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g---l~~~l~~pd~~~~~~~l~k~~~~~~l~l---~~ev~~ 173 (214)
T PRK06620 102 LLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV---LSILLNSPDDELIKILIFKHFSISSVTI---SRQIID 173 (214)
T ss_pred HHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC---ceEeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHH
Confidence 112222222 246689999885322 2223222 5799999999998888887764322221 135667
Q ss_pred HHHHHhCCCchHHHHH
Q 038265 345 KIMEKCRGIPLAVRTV 360 (883)
Q Consensus 345 ~i~~~c~glPLai~~~ 360 (883)
-|++++.|.--.+.-+
T Consensus 174 ~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 174 FLLVNLPREYSKIIEI 189 (214)
T ss_pred HHHHHccCCHHHHHHH
Confidence 7778777765544433
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.97 E-value=0.00011 Score=73.61 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=92.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEE
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLV 260 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llv 260 (883)
....+.|+|..|+|||.|.+++++... -++..++...+...+... .. ..+++.++ .-=+|+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~-----~~----~~~~~~~~-~~DlL~ 102 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDG-----EI----EEFKDRLR-SADLLI 102 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTT-----SH----HHHHHHHC-TSSEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcc-----cc----hhhhhhhh-cCCEEE
Confidence 344678999999999999999987641 124556666666555431 11 23444444 345788
Q ss_pred EeCCCCCChh-hHHHH-HHhcCC-CCCCCEEEEeecCh---------HHHHHHcccCCCCceecCCCChhcHHHHHHHHH
Q 038265 261 MDDVWNEDPR-AWGEL-KSLLLG-GAEGSKILVTTRSN---------KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 261 lDdv~~~~~~-~~~~l-~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
+||++..... .|.+. ...+.. ...|.+||+|++.. .....+... ..+++++++.++..+++.+.+
T Consensus 103 iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G---l~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 103 IDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG---LVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp EETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS---EEEEE----HHHHHHHHHHHH
T ss_pred EecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc---chhhcCCCCHHHHHHHHHHHH
Confidence 9999654322 23322 111111 12466899999642 222333332 679999999999999999988
Q ss_pred hcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 329 FKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
...+...+ .+++.-|++.+.+..-.+..+-..|
T Consensus 180 ~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 180 KERGIELP---EEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHTT--S----HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHhCCCCc---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 65444322 3556777777777666555544433
No 118
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00056 Score=73.72 Aligned_cols=194 Identities=20% Similarity=0.224 Sum_probs=116.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---------------CCCcHHHHHHHHH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---------------KDFGKRQIMTKII 228 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---------------~~~~~~~~~~~i~ 228 (883)
..+.+|+++++++...|...-.+ ....-+.|+|.+|+|||+.++.+.++. ..-+..+++..++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 34999999999999888654322 223348999999999999999998765 2235678888888
Q ss_pred HHhhCCCCCCCChHHHHHHHHHHcC--CCceEEEEeCCCCCChhhHHHHHHhcCCCC-CCCEE--EEeecChHHHHHHc-
Q 038265 229 NSVIGGNHGNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNEDPRAWGELKSLLLGGA-EGSKI--LVTTRSNKVALIMG- 302 (883)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--ivTtr~~~v~~~~~- 302 (883)
+.+.......+...+..+.+.+.+. ++.+++|||+++......-+.+-..+.... ..++| |..+-+........
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 8886544455666677777777764 478999999996532211122222222111 14444 33444433332221
Q ss_pred ---ccCCCCceecCCCChhcHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHhCC-CchHHHHH
Q 038265 303 ---TMRGTTGYNLQELPYKDCLSLFMKCAFK---EGKEKHPNLVKIGEKIMEKCRG-IPLAVRTV 360 (883)
Q Consensus 303 ---~~~~~~~~~l~~L~~~~a~~lf~~~a~~---~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~ 360 (883)
..-+...+...|-+.+|-.+.+..++-. .+. ..+...+++..++..-+| .=.||.++
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1111134667788888888888877632 222 233444445555555554 33444443
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00027 Score=78.81 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=108.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhh-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVI- 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~- 232 (883)
-.+++|.+..++.+.+++... .-.+.+.++|+.|+||||+|+.+.+... .++.-.....+-..-.
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 357999999999999888542 2246788999999999999988866541 1111111111110000
Q ss_pred ----CCCCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHc
Q 038265 233 ----GGNHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMG 302 (883)
Q Consensus 233 ----~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~ 302 (883)
-........+++.. +.+.+ .+++-++|+|+++.........+...+.....+..+|++|... .+.....
T Consensus 91 d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~ 169 (451)
T PRK06305 91 DVLEIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTIL 169 (451)
T ss_pred ceEEeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHH
Confidence 00001111233222 22222 2567789999997665555566776766655566777666432 2221111
Q ss_pred ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch
Q 038265 303 TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL 355 (883)
Q Consensus 303 ~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (883)
..+..+++.++++++..+.+...+-..+... ..+.+..|++.++|.+-
T Consensus 170 --sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 170 --SRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLR 217 (451)
T ss_pred --HhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 1236789999999999888887764433222 22456789999999764
No 120
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00027 Score=81.49 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC---C---CcHHHHHHHHHHH----hhC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK---D---FGKRQIMTKIINS----VIG 233 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~---~~~~~~~~~i~~~----~~~ 233 (883)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+..... . +.+.......... +..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 56899999999999988652 3356788999999999999998876541 0 1111111111000 000
Q ss_pred CCCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHHHHcccCCC
Q 038265 234 GNHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVALIMGTMRGT 307 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~ 307 (883)
........+++.+ +.+.+ .+++-++|+|+++......+..+...+-.......+|++|.. ..+..... ..+
T Consensus 93 daasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~--SRc 169 (725)
T PRK07133 93 DAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL--SRV 169 (725)
T ss_pred eccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH--hhc
Confidence 0001122333222 22222 356668999999877766777777776655555555555543 33332211 123
Q ss_pred CceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch-HHHHH
Q 038265 308 TGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL-AVRTV 360 (883)
Q Consensus 308 ~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 360 (883)
..+++.+++.++..+.+...+...+.... .+.+..|++.++|.+- |+..+
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 68999999999999888877644332222 2456789999999764 44433
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00032 Score=81.01 Aligned_cols=187 Identities=14% Similarity=0.201 Sum_probs=113.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----------CCcHHHHHHHHHHHhhC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK----------DFGKRQIMTKIINSVIG 233 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----------~~~~~~~~~~i~~~~~~ 233 (883)
.+++|.+...+.|..++... .-.+.+.++|+.|+||||+|+.+.+... .++.......+......
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 56899999999999888652 2235678999999999999999977641 12222222333222111
Q ss_pred -----CCCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcc
Q 038265 234 -----GNHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGT 303 (883)
Q Consensus 234 -----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~ 303 (883)
........+.+.+.+... ..+++-++|+|+++......+..+...+......+.+|++|.+.. +.....
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr- 169 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII- 169 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH-
Confidence 011122333443333221 124556889999987776677778777766555566666555433 222111
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
..+..+++..++.++....+.+.+...+.... .+.+..|++.++|.+..+...
T Consensus 170 -SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 -SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred -hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 12367888899999888888777644332222 245678999999987544433
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00028 Score=80.35 Aligned_cols=189 Identities=16% Similarity=0.201 Sum_probs=115.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhC-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIG- 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~- 233 (883)
-.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+... +++.-.....+...-.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 357999999999999988652 3356788999999999999999876542 12211222222110000
Q ss_pred ------CCCCCCChHHHHHHHHHH-----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHHHH
Q 038265 234 ------GNHGNLDPDRMQKVLRDS-----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVALIM 301 (883)
Q Consensus 234 ------~~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~ 301 (883)
........+...+ +++. ..+++-++|+|+++.........+...+........+|++|.+ ..+....
T Consensus 87 ~dvieidaas~~gvd~iRe-l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 87 IDVVELDAASHGGVDDTRE-LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred ceEEEeccccccCHHHHHH-HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 0001112333222 2221 1345668899999887777777777777765566666665544 3333222
Q ss_pred cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch-HHHHHHh
Q 038265 302 GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL-AVRTVGS 362 (883)
Q Consensus 302 ~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 362 (883)
. ..+..+++..++.++..+.+...+...+.... .+....|++.++|.+- |+..+-.
T Consensus 166 ~--SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 166 R--SRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred H--HhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 12368999999999998888887754443222 2455778899999774 4444433
No 123
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00014 Score=79.92 Aligned_cols=185 Identities=16% Similarity=0.200 Sum_probs=108.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHH-HHHhhCCCCCCCCh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKI-INSVIGGNHGNLDP 241 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~ 241 (883)
-.+++|.+...+.+.+.+... .-.+.+.++|++|+||||+|+.+.+....-....--... ...+..........
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 356899999999999988642 234688999999999999999886654210000000000 00000001111223
Q ss_pred HHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHHHHcccCCCCceecCCCC
Q 038265 242 DRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVALIMGTMRGTTGYNLQELP 316 (883)
Q Consensus 242 ~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~~~l~~L~ 316 (883)
+.....+.+. ..+++-++++|+++......+..+...+......+.+|++|.. ..+..... .....++..+++
T Consensus 91 ~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~--sr~~~v~~~~~~ 168 (367)
T PRK14970 91 DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL--SRCQIFDFKRIT 168 (367)
T ss_pred HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH--hcceeEecCCcc
Confidence 3333333321 2245568999999766655666776666554445566665543 22222111 112578999999
Q ss_pred hhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 317 YKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 317 ~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
+++....+...+...+.... .+....+++.++|.+-.+
T Consensus 169 ~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 169 IKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 99999998887755443322 256678888898866533
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00035 Score=78.39 Aligned_cols=187 Identities=16% Similarity=0.157 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHH----h
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINS----V 231 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~----~ 231 (883)
.+++|-+...+.+.+++... .-.+.+.++|+.|+||||+|+.+..... +++.......+-.. +
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 56899999999999988652 2345678899999999999998876541 11111111111110 0
Q ss_pred h-CCCCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHccc
Q 038265 232 I-GGNHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMGTM 304 (883)
Q Consensus 232 ~-~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~ 304 (883)
. -........+.. +.+.+.. .+++-++|+|+++.........+...+....+...+|++|.+. .+.....
T Consensus 91 ~eidaas~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~-- 167 (486)
T PRK14953 91 IEIDAASNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL-- 167 (486)
T ss_pred EEEeCccCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHH--
Confidence 0 000011122222 2232222 3566799999998776666677777776655566666655432 2222111
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVG 361 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 361 (883)
..+..+.+.+++.++....+...+-..+.... .+.+..|++.++|.+..+....
T Consensus 168 SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 168 SRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 11267899999999998888887754443222 2455778889999776544443
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00023 Score=79.30 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=98.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEE
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVM 261 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llvl 261 (883)
..-+.|+|..|+|||+|++++.+... -.+...+...+...+.... .....+++.++ +.-+||+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~dvLiI 212 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-------KEIEQFKNEIC-QNDVLII 212 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cCCEEEE
Confidence 34689999999999999999987431 1234556666655543210 11223344443 3458899
Q ss_pred eCCCCCCh-hhH-HHHHHhcCC-CCCCCEEEEeecChH---------HHHHHcccCCCCceecCCCChhcHHHHHHHHHh
Q 038265 262 DDVWNEDP-RAW-GELKSLLLG-GAEGSKILVTTRSNK---------VALIMGTMRGTTGYNLQELPYKDCLSLFMKCAF 329 (883)
Q Consensus 262 Ddv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~ 329 (883)
||+..... ..+ +.+...+.. ...|..||+|+.... +...+.. .-++.+++++.++-.+++.+.+-
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~---Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM---GLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC---CceeccCCcCHHHHHHHHHHHHH
Confidence 99965432 122 223222221 123457888876432 1122222 25678999999999999999885
Q ss_pred cCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 330 KEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
..+.. ..--.++..-|++.++|.|-.+.-+...+
T Consensus 290 ~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 290 NQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred hcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 43321 11224677889999999998877766544
No 126
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.91 E-value=0.00059 Score=69.74 Aligned_cols=185 Identities=16% Similarity=0.152 Sum_probs=112.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------------------CCCcHHHHHHHHHHHh
Q 038265 171 EDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-------------------KDFGKRQIMTKIINSV 231 (883)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------------------~~~~~~~~~~~i~~~~ 231 (883)
+.++++.+++..+. ..+.+-+.|+|..|+|||++++++.... ...+...+...|+.++
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 34555666665542 3667789999999999999999998654 3446788999999999
Q ss_pred hCCCCCCCChHHHHHHHHHHcCC-CceEEEEeCCCCC------ChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcc-
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNG-KRYLLVMDDVWNE------DPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGT- 303 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~- 303 (883)
........+.......+...++. +-=+||+|.+.+. ...+.-.....+.+.-.=+-|.|-|++.--+-....
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 76666666666666666666765 4458899999652 122233334444444444556666654222211100
Q ss_pred -cCCCCceecCCCChhcH-HHHHHHHH--hcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 304 -MRGTTGYNLQELPYKDC-LSLFMKCA--FKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 304 -~~~~~~~~l~~L~~~~a-~~lf~~~a--~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
......+.+.....++- ..|+.... .+-..+..-...+++..|...++|+.=-+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 01114566666655443 44443332 222222222456788999999999874443
No 127
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.91 E-value=0.00029 Score=69.88 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=99.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPD 242 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (883)
-.+|||.++-.+++.-.+..+. ......--|.++|++|.||||||.-+.+....- ++ ......-....
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn---------~k--~tsGp~leK~g 92 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIANELGVN---------LK--ITSGPALEKPG 92 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC---------eE--ecccccccChh
Confidence 3579999988888766654332 233556788999999999999999998765100 00 00000111122
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcC--------CCCCCCEEE-----------EeecChHHHHHHcc
Q 038265 243 RMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLL--------GGAEGSKIL-----------VTTRSNKVALIMGT 303 (883)
Q Consensus 243 ~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~--------~~~~gs~ii-----------vTtr~~~v~~~~~~ 303 (883)
++...+-. | .+.=++++|.++.......+-+-+++- +.++++|.| .|||.-.+......
T Consensus 93 DlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 93 DLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH
Confidence 22222222 2 233455667776544322222222221 223444433 68886433322221
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLA 356 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (883)
.- ..+.+++--+.+|-.+...+.+..-+.. -..+.+.+|+++..|-|--
T Consensus 171 RF-Gi~~rlefY~~~eL~~Iv~r~a~~l~i~---i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 171 RF-GIIQRLEFYTVEELEEIVKRSAKILGIE---IDEEAALEIARRSRGTPRI 219 (332)
T ss_pred hc-CCeeeeecCCHHHHHHHHHHHHHHhCCC---CChHHHHHHHHhccCCcHH
Confidence 11 1456777788888888888887433332 2235678999999999953
No 128
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00025 Score=80.94 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=114.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhC--
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIG-- 233 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~-- 233 (883)
.+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+.+... +++.-.....+...-..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 57999999999999988652 3356789999999999999999977641 11111112222111000
Q ss_pred ---CCCCCCChHHHHHHHHH----HcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHcccC
Q 038265 234 ---GNHGNLDPDRMQKVLRD----SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMGTMR 305 (883)
Q Consensus 234 ---~~~~~~~~~~~~~~l~~----~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~ 305 (883)
........++..+.... -..+++-++|+|+++..+...+..+...+....+.+.+|++|.+. .+..... .
T Consensus 91 ~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~--S 168 (563)
T PRK06647 91 IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK--S 168 (563)
T ss_pred EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH--H
Confidence 00111223333332211 123566689999998777667777777777655666776666543 2222211 1
Q ss_pred CCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 306 GTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 306 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
.+..++..+++.++..+.+...+...+.... .+.+..|++.++|.+-.+..
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2357899999999998888887754443222 35567788999998754433
No 129
>PRK05642 DNA replication initiation factor; Validated
Probab=97.88 E-value=0.00035 Score=70.90 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=86.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--C-----CcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--D-----FGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
...+.|+|..|+|||.|++++++... . .+...+... ...+.+.+.+-. ++|+||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~d-~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLEQYE-LVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhhhCC-EEEEec
Confidence 35789999999999999999876431 0 011111110 012233333322 688999
Q ss_pred CCCCC-hhhHHH-HHHhcCC-CCCCCEEEEeecChHHH---------HHHcccCCCCceecCCCChhcHHHHHHHHHhcC
Q 038265 264 VWNED-PRAWGE-LKSLLLG-GAEGSKILVTTRSNKVA---------LIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKE 331 (883)
Q Consensus 264 v~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~v~---------~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~ 331 (883)
+.... ...|+. +...+.. ...|..||+|++..... ..+.. ...+++++++.++-.+++..++...
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~---gl~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL---ALVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc---CeeeecCCCCHHHHHHHHHHHHHHc
Confidence 96432 224443 3333321 12466799988753221 12211 1568899999999999998766443
Q ss_pred CCCCCcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 332 GKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
+...+ .++..-|++++.|..-++..+-..|
T Consensus 183 ~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 183 GLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred CCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 32222 3666788888888776666555444
No 130
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.88 E-value=5.5e-05 Score=90.20 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=83.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHH------HHHHHHHHHhh-CCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKR------QIMTKIINSVI-GGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~------~~~~~i~~~~~-~~~~ 236 (883)
+.++||+++++++.+.|... ...-+.++|++|+|||++|+.+......-+.. .++.--+..+. +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~ 255 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKY 255 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccc
Confidence 46999999999999988652 23346799999999999999987754110000 00000001111 1111
Q ss_pred CCCChHHHHHHHHHHc-CCCceEEEEeCCCCCC---------hhhHHHHHHhcCCCCCCCEEEEeecChHHHHH----Hc
Q 038265 237 GNLDPDRMQKVLRDSL-NGKRYLLVMDDVWNED---------PRAWGELKSLLLGGAEGSKILVTTRSNKVALI----MG 302 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~----~~ 302 (883)
. .+.++....+.+.+ +.++.+|++|+++.-. ...-+.+.+.+.. + .-++|-+|...+.... ..
T Consensus 256 ~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~~e~~~~~~~d~a 332 (731)
T TIGR02639 256 R-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTYEEYKNHFEKDRA 332 (731)
T ss_pred c-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCHHHHHHHhhhhHH
Confidence 1 12223333333333 3468999999986321 1112223333332 1 2244544443221110 00
Q ss_pred ccCCCCceecCCCChhcHHHHHHHHH
Q 038265 303 TMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 303 ~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
.......+++.+++.++..+++....
T Consensus 333 l~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 333 LSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11112578999999999999998665
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.85 E-value=0.00013 Score=78.41 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=84.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPD 242 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (883)
-.+++|.++..+.+..++... .-..++.++|++|+||||+|+.+++.... +. ..+.... ...+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~~-~~--------~~i~~~~---~~~~ 82 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVGA-EV--------LFVNGSD---CRID 82 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCc-cc--------eEeccCc---ccHH
Confidence 467899999999999988642 33568888999999999999999876411 00 0000010 0111
Q ss_pred HHHHHHHHH-----cCCCceEEEEeCCCCC-ChhhHHHHHHhcCCCCCCCEEEEeecChHHH-HHHcccCCCCceecCCC
Q 038265 243 RMQKVLRDS-----LNGKRYLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGTTGYNLQEL 315 (883)
Q Consensus 243 ~~~~~l~~~-----l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~~~l~~L 315 (883)
.....+.+. ..+.+-++|+|+++.. .......+...+.....++++|+||...... .... .....+.+...
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~--sR~~~i~~~~p 160 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR--SRCRVIDFGVP 160 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH--hhceEEEeCCC
Confidence 111212221 1234568899999765 2222334444455445678899988754321 1111 11245677777
Q ss_pred ChhcHHHHHHH
Q 038265 316 PYKDCLSLFMK 326 (883)
Q Consensus 316 ~~~~a~~lf~~ 326 (883)
+.++..+++..
T Consensus 161 ~~~~~~~il~~ 171 (316)
T PHA02544 161 TKEEQIEMMKQ 171 (316)
T ss_pred CHHHHHHHHHH
Confidence 77777666554
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.84 E-value=4.6e-05 Score=91.47 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=85.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHH------HHHHHHHHHhh-CCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKR------QIMTKIINSVI-GGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~------~~~~~i~~~~~-~~~~ 236 (883)
+.+|||++++.++++.|... ...-+.++|.+|+||||+|+.+......-... .++.--+..+. +...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 46899999999999988652 23355699999999999999987764111000 00000000111 1111
Q ss_pred CCCChHHHHHHHHHHc-CCCceEEEEeCCCCCC-------hhhHH-HHHHhcCCCCCCCEEEEeecChHHHHHH----cc
Q 038265 237 GNLDPDRMQKVLRDSL-NGKRYLLVMDDVWNED-------PRAWG-ELKSLLLGGAEGSKILVTTRSNKVALIM----GT 303 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~iivTtr~~~v~~~~----~~ 303 (883)
...-.+.+...+.+.- .+++.+|++|+++... ..+.. .+.+.+.. ..-++|-||......... ..
T Consensus 261 ~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL 338 (852)
T TIGR03345 261 KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKKYFEKDPAL 338 (852)
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHH
Confidence 1111123333333332 2478999999986431 11111 13333322 124556566543221111 01
Q ss_pred cCCCCceecCCCChhcHHHHHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
......+.+++++.++..+++....
T Consensus 339 ~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 339 TRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 1122679999999999999986554
No 133
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00042 Score=80.08 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=113.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIG 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~ 233 (883)
-.+++|-+...+.+..++... .-.+.+.++|+.|+||||+|+.+..... .++.-.....+-.....
T Consensus 16 f~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 357999999999999988652 3356789999999999999988766431 11111111111110000
Q ss_pred -----CCCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEee-cChHHHHHHcc
Q 038265 234 -----GNHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT-RSNKVALIMGT 303 (883)
Q Consensus 234 -----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~~~ 303 (883)
........+.+...+.+. ..+++=++|+|+++......+..+...+.....++.+|++| +...+.....
T Consensus 91 n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~- 169 (614)
T PRK14971 91 NIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTIL- 169 (614)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHH-
Confidence 001112233444433221 22455588999998877777888888877666667766655 3333332221
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
..+..+++.+++.++....+...+...+.... .+.+..|++.++|..--+
T Consensus 170 -SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 170 -SRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred -hhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 12367999999999999988887754443322 245678999999976543
No 134
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=9.4e-05 Score=80.67 Aligned_cols=183 Identities=19% Similarity=0.153 Sum_probs=99.7
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
-.++.|.+...++|.+.+..+-. .+-...+-|.++|++|+|||++|+++++.....-..-.-..+.....+.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge- 222 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGE- 222 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcch-
Confidence 45788999888888776542110 1113456799999999999999999988763211100011111111111
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC----------hhh----HHHHHHhcCC--CCCCCEEEEeecChHHHH
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED----------PRA----WGELKSLLLG--GAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~~----~~~l~~~l~~--~~~gs~iivTtr~~~v~~ 299 (883)
....+.+.+.......+.+|++|+++... ... ..++...+.. ...+..||.||...+...
T Consensus 223 ----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 223 ----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred ----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 11222333333445678999999985320 001 1122222222 224567888887654432
Q ss_pred HH--cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 300 IM--GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 300 ~~--~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
.. ....-...+.+...+.++..++|.....+.+....-++ .++++.+.|.-
T Consensus 299 pAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 299 PALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred HHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 21 11122356889999999988888877643322222233 45566666554
No 135
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00065 Score=77.94 Aligned_cols=185 Identities=17% Similarity=0.183 Sum_probs=111.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------CCCcHHHHHHHHHHHhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------KDFGKRQIMTKIINSVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~~~~~~i~~~~~~~ 234 (883)
-++++|.+...+.+.+++... .-.+.+.++|+.|+||||+|+.+.+.. .+++.......+......+
T Consensus 15 f~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD 89 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 467999999999999988653 335678889999999999998886553 1222222222222211100
Q ss_pred -----CCCCCChHHHHHHHHHH-----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh-HHHHHHcc
Q 038265 235 -----NHGNLDPDRMQKVLRDS-----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMGT 303 (883)
Q Consensus 235 -----~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~ 303 (883)
.......+...+ +++. ..+++-++|+|+++......+..+...+........+|++|... .+.....
T Consensus 90 v~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~- 167 (559)
T PRK05563 90 VIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL- 167 (559)
T ss_pred eEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH-
Confidence 001122232222 2222 23456688999998777667777777766554555556555433 2221111
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
..+..++..+++.++..+.+...+...+.... .+....|++.++|.+..+.
T Consensus 168 -SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 168 -SRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred -hHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 12367889999999998888887754443222 2456778888888775433
No 136
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.80 E-value=4.5e-05 Score=83.65 Aligned_cols=182 Identities=18% Similarity=0.129 Sum_probs=98.6
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (883)
.++.|.++.++++.+.+..+-. -+-...+-|.++|++|+|||++|+++++.....-..-.-.++.....+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~G--- 259 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLG--- 259 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcc---
Confidence 5678999999988887642210 011234568899999999999999999875211000000111111111
Q ss_pred CCCChHHHHHHHHHHcCCCceEEEEeCCCCCC--------h--hh----HHHHHHhcCC--CCCCCEEEEeecChHHHHH
Q 038265 237 GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED--------P--RA----WGELKSLLLG--GAEGSKILVTTRSNKVALI 300 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------~--~~----~~~l~~~l~~--~~~gs~iivTtr~~~v~~~ 300 (883)
.....+...+.......+.+|+||+++... . .. ...+...+.. ...+.+||.||...+....
T Consensus 260 --e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 260 --DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred --hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 111122233333334678899999974310 0 00 1112222221 1235678888886555443
Q ss_pred Hcc--cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 301 MGT--MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 301 ~~~--~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
.-. ......+++...+.++..++|..+..........++ ..++..+.|.-
T Consensus 338 aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 338 ALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred HhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 211 112357899999999999999987743322222233 34555555543
No 137
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00031 Score=80.89 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=111.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~~ 234 (883)
-.++||.+...+.+..++... .-.+.+.++|+.|+||||+|+.+.+... +++.......+...-..+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 357999999999998888552 2346778999999999999998876541 122222222222111000
Q ss_pred -----CCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC-hHHHHHHcc
Q 038265 235 -----NHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVALIMGT 303 (883)
Q Consensus 235 -----~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~ 303 (883)
.......++.. .+.+.+ .+++-++|+|+++..+......+...+-.....+.+|++|.+ ..+.....
T Consensus 90 ~~eid~~s~~~v~~ir-~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~- 167 (576)
T PRK14965 90 VFEIDGASNTGVDDIR-ELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL- 167 (576)
T ss_pred eeeeeccCccCHHHHH-HHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH-
Confidence 00111222322 222222 245558899999877766677777777665556667665544 33332221
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc-hHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP-LAVRTV 360 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 360 (883)
..+..+++.+++.++....+...+...+.... .+....|++.++|.. .|+..+
T Consensus 168 -SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 168 -SRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred -HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 12367889999999988888776644333222 245577888998865 444443
No 138
>CHL00181 cbbX CbbX; Provisional
Probab=97.76 E-value=0.00089 Score=69.97 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=82.4
Q ss_pred ccccchhhHHHHHHHHh--------cCCC-CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHH
Q 038265 165 DIIGRYEDGEKIIELLM--------QTSD-GESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKI 227 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~--------~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i 227 (883)
+++|.++.+++|.++.. ...+ ........+.++|++|+||||+|+.+++... .+-... ...+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~-~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT-RDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec-HHHH
Confidence 47777666665544321 0000 1112234588899999999999999965421 110000 1122
Q ss_pred HHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC---------ChhhHHHHHHhcCCCCCCCEEEEeecChHHH
Q 038265 228 INSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE---------DPRAWGELKSLLLGGAEGSKILVTTRSNKVA 298 (883)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 298 (883)
.....+.. .......+.+. ..-+|++|++... ....-+.+...+.....+.+||+++....+.
T Consensus 103 ~~~~~g~~-----~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 103 VGQYIGHT-----APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHhccc-----hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 22222211 11222223322 2359999999642 1112233444454544566777777544332
Q ss_pred HHHcc-----cCCCCceecCCCChhcHHHHHHHHHhcC
Q 038265 299 LIMGT-----MRGTTGYNLQELPYKDCLSLFMKCAFKE 331 (883)
Q Consensus 299 ~~~~~-----~~~~~~~~l~~L~~~~a~~lf~~~a~~~ 331 (883)
..... ......+.+++++.+|..+++...+...
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 21110 0112578999999999999988887443
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.75 E-value=0.00021 Score=74.12 Aligned_cols=157 Identities=14% Similarity=0.216 Sum_probs=78.7
Q ss_pred ccccchhhHHHHHHHHhc---------CCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcH---HHHH----HHHH
Q 038265 165 DIIGRYEDGEKIIELLMQ---------TSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGK---RQIM----TKII 228 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---~~~~----~~i~ 228 (883)
+++|.+...++|.+.... ..-...+...-+.++|++|+||||+|+.+++.....+. ..+. .++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 478888777766543211 00012244567889999999999999999764210000 0000 0111
Q ss_pred HHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC--------hhhHHHHHHhcCCCCCCCEEEEeecChHHHHH
Q 038265 229 NSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED--------PRAWGELKSLLLGGAEGSKILVTTRSNKVALI 300 (883)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 300 (883)
....+ .........+.+. ..-+|++|+++.-. ....+.+...+........+|+++........
T Consensus 87 ~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 87 GEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF 158 (261)
T ss_pred hhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence 11111 1112222222222 23588999996421 11223344444333333355555543322110
Q ss_pred ------HcccCCCCceecCCCChhcHHHHHHHHHhc
Q 038265 301 ------MGTMRGTTGYNLQELPYKDCLSLFMKCAFK 330 (883)
Q Consensus 301 ------~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~ 330 (883)
... .....+.+++++.++-.+++.+.+..
T Consensus 159 ~~~~p~L~s-Rf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 159 LSLNPGLRS-RFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred HhcChHHHh-ccceEEEECCCCHHHHHHHHHHHHHH
Confidence 100 01145788999999999999877743
No 140
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00067 Score=72.15 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=97.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC--------CCCcHHHHHHHHHHHhhC-------CC-CCCCChHHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ--------KDFGKRQIMTKIINSVIG-------GN-HGNLDPDRMQKVLRDSL 252 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~~~~~~i~~~~~~-------~~-~~~~~~~~~~~~l~~~l 252 (883)
.-.+.+.++|+.|+||||+|+.+.... ..++.-.....+...-.+ .. ......+++.+.+...-
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 446788999999999999998886544 111211222222211111 00 01233444444332211
Q ss_pred ----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHH-HHcccCCCCceecCCCChhcHHHHHHHH
Q 038265 253 ----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL-IMGTMRGTTGYNLQELPYKDCLSLFMKC 327 (883)
Q Consensus 253 ----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~~~~~~~~~~~~l~~L~~~~a~~lf~~~ 327 (883)
.+++-++|+|+++..+......+...+-....++.+|+||.+..... ... ..+..+.+.+++.+++.+.+...
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~--SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK--SRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred hccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH--hhceeeeCCCcCHHHHHHHHHHh
Confidence 23344557799988887777778777766666788888888754321 111 22367999999999999888765
Q ss_pred HhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 328 AFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 328 a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
. ... ..+.+..++..++|.|+....+
T Consensus 178 ~-~~~------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 178 L-PES------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred c-ccC------ChHHHHHHHHHcCCCHHHHHHH
Confidence 3 111 1233457789999999754443
No 141
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.69 E-value=0.00013 Score=88.17 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=83.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHH-------HHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIM-------TKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~-------~~i~~~~~~~~~ 236 (883)
+.++||+++++++.+.|... ...-+.++|++|+|||++|+.+.......+....+ -++..-+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~ 252 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY 252 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC
Confidence 45899999999999999652 22345799999999999999887654211110000 001111112111
Q ss_pred CCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-------hhhH-HHHHHhcCCCCCCCEEEEeecChHHHHHHc----cc
Q 038265 237 GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-------PRAW-GELKSLLLGGAEGSKILVTTRSNKVALIMG----TM 304 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-------~~~~-~~l~~~l~~~~~gs~iivTtr~~~v~~~~~----~~ 304 (883)
...-.+.+...+.+.-..++.+|++|+++.-. ..+. .-+.+.+.. + .-++|.+|.......... ..
T Consensus 253 ~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l~~IgaTt~~ey~~~ie~D~aL~ 330 (821)
T CHL00095 253 RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-ELQCIGATTLDEYRKHIEKDPALE 330 (821)
T ss_pred ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-CcEEEEeCCHHHHHHHHhcCHHHH
Confidence 11112223333333334578999999985210 0111 122323322 1 235565665544322111 01
Q ss_pred CCCCceecCCCChhcHHHHHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKC 327 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~ 327 (883)
.....+.+...+.++...++...
T Consensus 331 rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 331 RRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcceEEecCCCCHHHHHHHHHHH
Confidence 11256788888988888887654
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.68 E-value=0.0008 Score=66.51 Aligned_cols=125 Identities=27% Similarity=0.372 Sum_probs=72.0
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCC
Q 038265 161 VRTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLD 240 (883)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 240 (883)
+.-++++|.+...+.|++-...-..+ ....-|.+||..|.|||++++++.+....-+ ++-+.-....-.+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~G--------LRlIev~k~~L~~ 93 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQG--------LRLIEVSKEDLGD 93 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcC--------ceEEEECHHHhcc
Confidence 44567999999999887644221111 3355678899999999999999977542211 1111001111123
Q ss_pred hHHHHHHHHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCC---CC-CCEEEEeecChHH
Q 038265 241 PDRMQKVLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG---AE-GSKILVTTRSNKV 297 (883)
Q Consensus 241 ~~~~~~~l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~---~~-gs~iivTtr~~~v 297 (883)
...+.+.++. +..||+|++||+.- .+...+..++..+.++ .| +..|..||-.++.
T Consensus 94 l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 94 LPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred HHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 3344444442 45799999999843 2334566777766543 23 3334445444433
No 143
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00012 Score=86.17 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=83.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----CCc--HHHHHHHHHHHhh-CCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK----DFG--KRQIMTKIINSVI-GGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~--~~~~~~~i~~~~~-~~~~ 236 (883)
+.++||++++.++.+.|.... ..-+.++|++|+|||++|+.++.... ++. ...++.-....+. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~ 259 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccch
Confidence 358999999999999886621 23446899999999999999876530 000 0000000011111 1111
Q ss_pred CCCChHHHHHHHHHHc-CCCceEEEEeCCCCC--------ChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHc----c
Q 038265 237 GNLDPDRMQKVLRDSL-NGKRYLLVMDDVWNE--------DPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMG----T 303 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~----~ 303 (883)
.. +.+.....+.+.+ +.++.+|++|+++.- ...+...+...+...+ .-+||-+|...+...... .
T Consensus 260 ~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 260 RG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred hh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHH
Confidence 11 2222222222222 456789999999632 1122222222222211 234555555443221110 0
Q ss_pred cCCCCceecCCCChhcHHHHHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
......+.+++++.++..+++....
T Consensus 338 ~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 338 ARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0112578999999999999998664
No 144
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=2.1e-05 Score=77.93 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=59.5
Q ss_pred CCCCCccEEeecCCCCCc-cCCccCCCCccccccccccccccccCC--CCCCCCCCcCeeeccCCcchhhhhCCCCCCCC
Q 038265 760 GSSKTLQMLTIGDCPNFM-ALPRSLKDLEALENLLITSCPKLSSLP--EGMHHLTTLKTLAIEECPALCERCKPLTGEDW 836 (883)
Q Consensus 760 ~~~~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 836 (883)
..+|++..+.+..|+.-+ .-..+...+|.+-.|+|+.++ +.+.. ..+..+|.|..|.+.++|.....-. ....+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~ 272 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRF 272 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCcccccccC--CcceE
Confidence 456888888888887543 223455667888888888866 33322 2467889999999999986543211 11223
Q ss_pred CccCCCCeee-eCCCcccchh
Q 038265 837 PKIAHIPQID-LDGEMIKSSD 856 (883)
Q Consensus 837 ~~~~~l~~l~-l~~n~i~~~~ 856 (883)
--+.+++++. ++|..|....
T Consensus 273 llIaRL~~v~vLNGskIss~e 293 (418)
T KOG2982|consen 273 LLIARLTKVQVLNGSKISSRE 293 (418)
T ss_pred EEEeeccceEEecCcccchhh
Confidence 4567777774 4555666554
No 145
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00078 Score=69.23 Aligned_cols=181 Identities=19% Similarity=0.132 Sum_probs=112.1
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (883)
.++=|-++.+++|.+.+.-+-. -+-..++=|.++|++|.|||-||++|+++.+.-..+-.-.++.+...|+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEG- 229 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEG- 229 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccc-
Confidence 4566888888888887644321 12345678999999999999999999998754333333344444444432
Q ss_pred CCCChHHHHHHHHHHcC-CCceEEEEeCCCCCC--------------hhhHHHHHHhcCCC--CCCCEEEEeecChHHHH
Q 038265 237 GNLDPDRMQKVLRDSLN-GKRYLLVMDDVWNED--------------PRAWGELKSLLLGG--AEGSKILVTTRSNKVAL 299 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~ 299 (883)
..+...+.+.-+ .....|++|.++... +...-++..-+.++ ...-|||..|...++..
T Consensus 230 -----aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 230 -----ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD 304 (406)
T ss_pred -----hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccC
Confidence 233344433333 467999999986421 11122333344433 23568999888766554
Q ss_pred HHc--ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 300 IMG--TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 300 ~~~--~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
..- ...-++.+++..-+.+.-.++|.-++.+-.....-++ +.+++.|.|.-
T Consensus 305 PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 305 PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 322 2223478899977777778888888855444333344 45666777665
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.64 E-value=0.00017 Score=87.42 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=82.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-CcHHHH------HHHHHHHhh-CCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-FGKRQI------MTKIINSVI-GGN 235 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~------~~~i~~~~~-~~~ 235 (883)
+.+|||++++.++++.|... .-.-+.++|++|+|||++|+.+..+... ..+..+ ..++ ..+. +..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~-~~l~a~~~ 245 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM-GALIAGAK 245 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH-HHHhhcch
Confidence 45999999999999998652 2334568999999999999988776411 101000 0000 1111 111
Q ss_pred CCCCChH-HHHHHHHHHcC-CCceEEEEeCCCCCC-------hhhHHHHHHhcCCCCCC-CEEEEeecChHHHHHH----
Q 038265 236 HGNLDPD-RMQKVLRDSLN-GKRYLLVMDDVWNED-------PRAWGELKSLLLGGAEG-SKILVTTRSNKVALIM---- 301 (883)
Q Consensus 236 ~~~~~~~-~~~~~l~~~l~-~kr~LlvlDdv~~~~-------~~~~~~l~~~l~~~~~g-s~iivTtr~~~v~~~~---- 301 (883)
... +.+ .+...+.+.-+ +++.+|++|+++.-. ..+..++.. +....| -++|-+|.........
T Consensus 246 ~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk--~~l~~g~i~~IgaTt~~e~r~~~~~d~ 322 (852)
T TIGR03346 246 YRG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLK--PALARGELHCIGATTLDEYRKYIEKDA 322 (852)
T ss_pred hhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhc--hhhhcCceEEEEeCcHHHHHHHhhcCH
Confidence 111 222 23333333222 468999999996321 001111111 111223 3455555444331111
Q ss_pred cccCCCCceecCCCChhcHHHHHHHHH
Q 038265 302 GTMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 302 ~~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
........+.+...+.++..+++....
T Consensus 323 al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 323 ALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 111122568899999999999887664
No 147
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.63 E-value=0.0005 Score=71.92 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
.-+.++|++|+|||++|+.+..... .|-... ..+++....+. ........+.+. ..-+|+||+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~-~~~l~~~~~g~-----~~~~~~~~~~~a---~~gvL~iDE 129 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT-RDDLVGQYIGH-----TAPKTKEILKRA---MGGVLFIDE 129 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec-HHHHhHhhccc-----chHHHHHHHHHc---cCcEEEEec
Confidence 3588999999999999976654321 110000 11222222221 112222223322 336889999
Q ss_pred CCCC---------ChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHccc-----CCCCceecCCCChhcHHHHHHHHHh
Q 038265 264 VWNE---------DPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTM-----RGTTGYNLQELPYKDCLSLFMKCAF 329 (883)
Q Consensus 264 v~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~-----~~~~~~~l~~L~~~~a~~lf~~~a~ 329 (883)
+... .....+.+...+.....+.+||+++............ .....+++++++.+|-.+++...+-
T Consensus 130 i~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 130 AYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred hhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 9632 1122344555555555566777776543222211110 0125689999999999999888774
Q ss_pred c
Q 038265 330 K 330 (883)
Q Consensus 330 ~ 330 (883)
.
T Consensus 210 ~ 210 (284)
T TIGR02880 210 E 210 (284)
T ss_pred H
Confidence 3
No 148
>CHL00176 ftsH cell division protein; Validated
Probab=97.59 E-value=0.00066 Score=78.48 Aligned_cols=177 Identities=18% Similarity=0.227 Sum_probs=98.6
Q ss_pred CCccccchhhHHHHHHHH---hcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CC---cHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELL---MQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQK-DF---GKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~---~~~~~~~~i~~~~~ 232 (883)
-.+++|.++..+++.+.+ ..+.. -+....+-|.++|++|+|||++|++++.... +| +...+.. ...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~----~~~ 257 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE----MFV 257 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH----Hhh
Confidence 457889887776665543 22110 0112345699999999999999999987652 11 1122211 111
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC----------hhhHHH-HHHh---cCC--CCCCCEEEEeecChH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGE-LKSL---LLG--GAEGSKILVTTRSNK 296 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~~~~~-l~~~---l~~--~~~gs~iivTtr~~~ 296 (883)
+ .....+...+.......+.+|++|+++... ...+++ +... +.. ...+-.||.||...+
T Consensus 258 g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~ 332 (638)
T CHL00176 258 G-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVD 332 (638)
T ss_pred h-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchH
Confidence 1 122334445555566788999999996421 112222 2222 221 234556777776654
Q ss_pred HHHHHc--ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCC
Q 038265 297 VALIMG--TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRG 352 (883)
Q Consensus 297 v~~~~~--~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g 352 (883)
.....- ...-...+.+...+.++-.++++.++..... .+ ......+++.+.|
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--SP--DVSLELIARRTPG 386 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--ch--hHHHHHHHhcCCC
Confidence 433211 1112357888999999999999888743211 11 1223567777777
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=6.9e-05 Score=53.04 Aligned_cols=40 Identities=40% Similarity=0.552 Sum_probs=25.3
Q ss_pred CcccEEEecCccccccccccCCCCCceEecccCCccccccC
Q 038265 560 KSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLP 600 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp 600 (883)
++|++|++++|.++.+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 35677777777777777667777777777777765 44433
No 150
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=0.00011 Score=67.48 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=50.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccCCC----CcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCC-CceEEEEeCCCCCC
Q 038265 194 IPIVGIGGLGKTALAKLVYNDQKD----FGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNG-KRYLLVMDDVWNED 268 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~~ 268 (883)
|.|+|++|+||||+|+.+.+.... .+...+.. .........+...+.+.-.. ++.+|++||++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS---------SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT---------SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccc---------ccccccccccccccccccccccceeeeeccchhcc
Confidence 578999999999999999887621 11111110 11111222333333333233 48999999996543
Q ss_pred hhh-----------HHHHHHhcCCCC---CCCEEEEeecC
Q 038265 269 PRA-----------WGELKSLLLGGA---EGSKILVTTRS 294 (883)
Q Consensus 269 ~~~-----------~~~l~~~l~~~~---~gs~iivTtr~ 294 (883)
... ...+...+.... .+..||.||..
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 322 233444443322 23566667765
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.52 E-value=0.00096 Score=74.22 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=87.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEE
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVM 261 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llvl 261 (883)
...+.|+|++|+|||+|++++++... ..+...+...+...+... ..+ .+.+.+++ .-+|||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~-~dlLii 205 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNN-----KME----EFKEKYRS-VDLLLI 205 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcC-----CHH----HHHHHHHh-CCEEEE
Confidence 45689999999999999999987541 112334444444443221 122 22333332 348899
Q ss_pred eCCCCCChhhH--HHHHHhcCC-CCCCCEEEEeecCh-HHHHHH-----cccCCCCceecCCCChhcHHHHHHHHHhcCC
Q 038265 262 DDVWNEDPRAW--GELKSLLLG-GAEGSKILVTTRSN-KVALIM-----GTMRGTTGYNLQELPYKDCLSLFMKCAFKEG 332 (883)
Q Consensus 262 Ddv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~-~v~~~~-----~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~ 332 (883)
||++......+ +.+...+.. ...|..+|+||... .....+ .-......+.+++.+.++-.+++...+...+
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~ 285 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG 285 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 99965322111 122222211 11355688887642 211111 1111124688999999999999998885433
Q ss_pred CCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 333 KEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 333 ~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
...+ .++...|++.+.|.+-.+.-
T Consensus 286 ~~l~---~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 286 LELP---DEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred CCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 2222 35667788888887765443
No 152
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.52 E-value=0.0014 Score=74.92 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=96.2
Q ss_pred cCCccccchhhHHHHHHHHh---cCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CC---cHHHHHHHHHHHh
Q 038265 162 RTSDIIGRYEDGEKIIELLM---QTS---DGESETVSVIPIVGIGGLGKTALAKLVYNDQK-DF---GKRQIMTKIINSV 231 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~---~~~~~~~~i~~~~ 231 (883)
.-.+++|.++..+++.+.+. .+. ..+....+-+.++|++|+|||++|+++.+... +| +...+. ...
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~----~~~ 128 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV----EMF 128 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH----HHH
Confidence 34578898887776655443 110 00113345688999999999999999987652 11 112221 111
Q ss_pred hCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC----------hhhHHHHHH----hcCC--CCCCCEEEEeecCh
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGELKS----LLLG--GAEGSKILVTTRSN 295 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~~~~~l~~----~l~~--~~~gs~iivTtr~~ 295 (883)
.+ .....+...+.......+.+|++|+++... ...+..... .+.. ...+-.||.||..+
T Consensus 129 ~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 129 VG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred hc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 11 122334444555555677999999995421 111222211 1211 12344566666654
Q ss_pred HHHHH-H-cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 296 KVALI-M-GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 296 ~v~~~-~-~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
..... . ....-...+.+...+.++-.++|..+..........+ ...+++.+.|.-
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGFS 260 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCCC
Confidence 32221 1 1111235788999999888899988763322211111 246777777633
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.51 E-value=2.8e-06 Score=93.57 Aligned_cols=124 Identities=24% Similarity=0.219 Sum_probs=67.3
Q ss_pred ccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCcc-ccCCcccCEEEeCC
Q 038265 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKD-IRYLVSLRMFVVTT 640 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~ 640 (883)
|.+.+.++|.+..+..++.-++.|+.|+|++|++.. .- .+..|+.|++|||+.| .+..+|.- ...+. |..|++++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecc
Confidence 444455555555555555566666677777665332 22 3555666677777664 33444432 12222 66666666
Q ss_pred ccccccccccCCCCCCCeEEeecCCCccc-cccccccCcccceeeeccccC
Q 038265 641 KQKSLLESGIGCLSSLRFLMISDCGNLEY-LFEDIDQLSVLRSLVINSCPR 690 (883)
Q Consensus 641 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 690 (883)
|.++.+ .++.++.+|+.||+++|-..+. -..-+..+..|+.|.|.||+.
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 666654 3566666666677666432211 012234556666666666653
No 154
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0039 Score=61.45 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=103.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC------------CCCcHHHHHHHHHHHhhCCCCCCCChHHHHH----HHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ------------KDFGKRQIMTKIINSVIGGNHGNLDPDRMQK----VLRDSL 252 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~l~~~l 252 (883)
.+..++.++|.-|.|||.++++..... ..++...+...++.++... ..+....... .+....
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHHHHH
Confidence 345699999999999999999543322 4455666777777776552 2223332222 333322
Q ss_pred -CCCc-eEEEEeCCCCCChhhHHHHHHhcCCCCCCC---EEEEeecCh---H-HHHHHc-ccCCCCc-eecCCCChhcHH
Q 038265 253 -NGKR-YLLVMDDVWNEDPRAWGELKSLLLGGAEGS---KILVTTRSN---K-VALIMG-TMRGTTG-YNLQELPYKDCL 321 (883)
Q Consensus 253 -~~kr-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtr~~---~-v~~~~~-~~~~~~~-~~l~~L~~~~a~ 321 (883)
+++| ..++.|++........+.++........++ +|+..-..+ . ....+. ....... |++.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 4677 899999997766666666655443222222 233332211 0 000000 0011123 899999999999
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHh
Q 038265 322 SLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGS 362 (883)
Q Consensus 322 ~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 362 (883)
.++..+..+.+.+.+--..+....|....+|.|.+|..++.
T Consensus 207 ~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 207 LYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 98888876554432222335567889999999999987764
No 155
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=8.1e-05 Score=86.71 Aligned_cols=132 Identities=14% Similarity=0.212 Sum_probs=86.8
Q ss_pred ceEEEEEEecccccccccccCC-CCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceE
Q 038265 509 SVRHLSFVSANALRNDFASFLP-DLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRH 587 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 587 (883)
+++++.+.+.......++..+. .+|.|++|.+.+. ......+.....++++|+.||+|+++++.+ .++++|++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~--~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR--QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc--eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4566666555444555544443 4788899888632 222223455677899999999999999988 78899999999
Q ss_pred ecccCCccccccC--ccccCCCcccEeecCCCCCCccC--C----ccccCCcccCEEEeCCcccc
Q 038265 588 LDLSGNRKIKKLP--NSICELQSLQTLNLGDCLELEEL--P----KDIRYLVSLRMFVVTTKQKS 644 (883)
Q Consensus 588 L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~l--p----~~~~~l~~L~~L~l~~~~~~ 644 (883)
|.+.+-. +..-. ..+.+|++|++||+|........ . ..-..|++|+.||.|++.+.
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9988543 22211 24778999999999974433221 1 11133677777777766554
No 156
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.50 E-value=0.0012 Score=73.70 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=88.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEE
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVM 261 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llvl 261 (883)
..-+.|+|.+|+|||+|++++.+... -.+...++.++...+... +.+ .+++..+.+.-+|++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~-----~~~----~f~~~~~~~~dvLlI 200 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG-----KLN----EFREKYRKKVDVLLI 200 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcc-----cHH----HHHHHHHhcCCEEEE
Confidence 34599999999999999999987641 113445555555544221 122 233333344568999
Q ss_pred eCCCCCC-hhhH-HHHHHhcCC-CCCCCEEEEeec-ChHHHHHH----c-ccCCCCceecCCCChhcHHHHHHHHHhcCC
Q 038265 262 DDVWNED-PRAW-GELKSLLLG-GAEGSKILVTTR-SNKVALIM----G-TMRGTTGYNLQELPYKDCLSLFMKCAFKEG 332 (883)
Q Consensus 262 Ddv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtr-~~~v~~~~----~-~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~ 332 (883)
||++... ...+ +.+...+.. ...|..||+||. .+.-...+ . -......+.+++.+.++-.+++.+.+...+
T Consensus 201 DDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~ 280 (440)
T PRK14088 201 DDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH 280 (440)
T ss_pred echhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC
Confidence 9996431 1111 122222211 112446888874 33222111 1 011125778999999999999998874332
Q ss_pred CCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 333 KEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 333 ~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
...+ .++..-|++.+.|.--.+.-
T Consensus 281 ~~l~---~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 281 GELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred CCCC---HHHHHHHHhccccCHHHHHH
Confidence 2222 35667788887776544443
No 157
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.48 E-value=1.2e-05 Score=92.61 Aligned_cols=110 Identities=25% Similarity=0.234 Sum_probs=47.9
Q ss_pred cCCcccEEEecCcc-ccc--cccccCCCCCceEecccCC-ccccccC----ccccCCCcccEeecCCCCCCccC-Cccc-
Q 038265 558 KSKSLRVLVLMNSA-IEV--LPRKMGNLRQLRHLDLSGN-RKIKKLP----NSICELQSLQTLNLGDCLELEEL-PKDI- 627 (883)
Q Consensus 558 ~~~~L~~L~l~~~~-~~~--lp~~~~~l~~L~~L~l~~~-~~~~~lp----~~~~~l~~L~~L~L~~~~~~~~l-p~~~- 627 (883)
.++.|+.|.+.++. +.. +-.....+++|+.|+++++ ......+ .....+++|+.|+++.|..+... -..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35556655555442 222 2233445556666666552 1111111 12233456666666665532211 1111
Q ss_pred cCCcccCEEEeCCcc-cc--ccccccCCCCCCCeEEeecCCCc
Q 038265 628 RYLVSLRMFVVTTKQ-KS--LLESGIGCLSSLRFLMISDCGNL 667 (883)
Q Consensus 628 ~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L~~L~l~~~~~~ 667 (883)
..+++|+.|.+.++. ++ .+......+++|++|++++|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 224555555544443 22 11122344555666666655543
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.47 E-value=0.00023 Score=85.86 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=82.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcH-HHH------HHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGK-RQI------MTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~~~------~~~i~~~~~~~~~ 236 (883)
+.++||+.++.++++.|... ...-+.++|.+|+|||++|+.+......-.. ..+ .-++-..+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 45999999999999998652 2335679999999999999988776511000 000 0000000011111
Q ss_pred CCCChHHHHHHHHHHc-CCCceEEEEeCCCCCCh-------hhHHH-HHHhcCCCCCCCEEEEeecChHHHHHH----cc
Q 038265 237 GNLDPDRMQKVLRDSL-NGKRYLLVMDDVWNEDP-------RAWGE-LKSLLLGGAEGSKILVTTRSNKVALIM----GT 303 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~~-------~~~~~-l~~~l~~~~~gs~iivTtr~~~v~~~~----~~ 303 (883)
...-.+.+...+.+.. .+++.+|++|+++.... .+-.. +.+.+.. ..-++|-||......... ..
T Consensus 252 ~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al 329 (857)
T PRK10865 252 RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAAL 329 (857)
T ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHH
Confidence 1111222333333322 35789999999864210 01111 2222211 133555555544432111 11
Q ss_pred cCCCCceecCCCChhcHHHHHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
......+.+...+.++..++++...
T Consensus 330 ~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 330 ERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1112467788888899998887654
No 159
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.0015 Score=69.57 Aligned_cols=202 Identities=14% Similarity=0.124 Sum_probs=115.6
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----C-----------CcHHHHHH
Q 038265 161 VRTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK----D-----------FGKRQIMT 225 (883)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~-----------~~~~~~~~ 225 (883)
..++.++||+.++..+.+++...-+ .....-+-|.|.+|.|||.+...++.+.. . -....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3467799999999999999876432 24456788999999999999999988761 1 23567777
Q ss_pred HHHHHhhCCCCCCCChHHHHHHHHHHcCCC--ceEEEEeCCCCCChhhHHHHHHhcC-CCCCCCEEEEeecCh--HHH--
Q 038265 226 KIINSVIGGNHGNLDPDRMQKVLRDSLNGK--RYLLVMDDVWNEDPRAWGELKSLLL-GGAEGSKILVTTRSN--KVA-- 298 (883)
Q Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlvlDdv~~~~~~~~~~l~~~l~-~~~~gs~iivTtr~~--~v~-- 298 (883)
.|...+...........+....+.+...+. -+|+|+|..+.-....-..+-..|- ..-+++|+|+.---. +..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 887777333222222344555666666553 5899999885422111111211121 123566666543211 111
Q ss_pred --HHHcc--cCCCCceecCCCChhcHHHHHHHHHhcCCCCC--CcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 299 --LIMGT--MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEK--HPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 299 --~~~~~--~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~--~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
..... .-....+..++-+.++..++|..+.-...... .+..+-.|++++...|-+--|+.+.-+++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 11125677889999999999998873322111 11222233444444444555555554444
No 160
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.44 E-value=0.0035 Score=69.71 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=81.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC-------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK-------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
..-+.|+|+.|+|||+|++++.+... ..+...+...+...+... . ...+++.++ +.-++++||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~dvLiIDD 210 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSG-----E----MQRFRQFYR-NVDALFIED 210 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcc-----h----HHHHHHHcc-cCCEEEEcc
Confidence 35688999999999999999987541 112233333433333211 1 122333333 345888999
Q ss_pred CCCCChhhH--HHHHHhcCC-CCCCCEEEEeecCh-HHH----HHHcc-cCCCCceecCCCChhcHHHHHHHHHhcCCCC
Q 038265 264 VWNEDPRAW--GELKSLLLG-GAEGSKILVTTRSN-KVA----LIMGT-MRGTTGYNLQELPYKDCLSLFMKCAFKEGKE 334 (883)
Q Consensus 264 v~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~-~v~----~~~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~ 334 (883)
+.......+ +.+...+.. ...|..||+||... ... ..... ......+++++++.++-.+++.+.+...+..
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~ 290 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIR 290 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 865332222 122222111 01355788888642 111 11111 1112578899999999999999888543322
Q ss_pred CCcchHHHHHHHHHHhCCC
Q 038265 335 KHPNLVKIGEKIMEKCRGI 353 (883)
Q Consensus 335 ~~~~~~~~~~~i~~~c~gl 353 (883)
.+ .++..-|++.+.|.
T Consensus 291 l~---~evl~~la~~~~~d 306 (445)
T PRK12422 291 IE---ETALDFLIEALSSN 306 (445)
T ss_pred CC---HHHHHHHHHhcCCC
Confidence 22 23445566665543
No 161
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.002 Score=63.00 Aligned_cols=181 Identities=19% Similarity=0.143 Sum_probs=99.2
Q ss_pred CCccccchhhHHH---HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCC
Q 038265 163 TSDIIGRYEDGEK---IIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNL 239 (883)
Q Consensus 163 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 239 (883)
-+++||.++.... |.+.|..+..=++--.+-|..+|++|.|||.+|+++.+.....-..--..+++..-.+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG------ 193 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG------ 193 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh------
Confidence 3578998876553 4555654322233557889999999999999999999987322111111122222211
Q ss_pred ChHHHHHH-HHHHcCCCceEEEEeCCCCCCh--------hhHHHHHHh----cCC--CCCCCEEEEeecChHHHHHHccc
Q 038265 240 DPDRMQKV-LRDSLNGKRYLLVMDDVWNEDP--------RAWGELKSL----LLG--GAEGSKILVTTRSNKVALIMGTM 304 (883)
Q Consensus 240 ~~~~~~~~-l~~~l~~kr~LlvlDdv~~~~~--------~~~~~l~~~----l~~--~~~gs~iivTtr~~~v~~~~~~~ 304 (883)
+....+.. ....-+.-++.+.+|.++-... .+..++..+ +.+ .+.|-..|-.|.++......--.
T Consensus 194 dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs 273 (368)
T COG1223 194 DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS 273 (368)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh
Confidence 12222222 2233345789999998753210 111122222 222 24566666667666555432211
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCC
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGI 353 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 353 (883)
.-..-++....+++|-.+++..++-.-..+.... .+.++++.+|+
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 1224577788889999999998884333222222 24566666654
No 162
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.43 E-value=0.0037 Score=75.23 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=39.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+++|.++..++|.+++....-....+.+++.++|++|+|||++|+.+.+..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999887643210111234589999999999999999998765
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.42 E-value=0.0016 Score=74.79 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=41.8
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.-++++|-++.++++..++....- .....+++.|+|++|+||||+++.+....
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999865321 12334689999999999999999998764
No 164
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.42 E-value=0.0019 Score=72.87 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=89.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEE
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVM 261 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llvl 261 (883)
...+.|+|++|+|||+|++++.+... ..+...+...+...+... .. ..+.+.++ +.-+|||
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~----~~~~~~~~-~~dlLii 217 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNN-----TM----EEFKEKYR-SVDVLLI 217 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcC-----cH----HHHHHHHh-cCCEEEE
Confidence 45689999999999999999987641 123344444444443211 11 22333333 3448999
Q ss_pred eCCCCCChhh-H-HHHHHhcCC-CCCCCEEEEeecChH--HH---HHHc-ccCCCCceecCCCChhcHHHHHHHHHhcCC
Q 038265 262 DDVWNEDPRA-W-GELKSLLLG-GAEGSKILVTTRSNK--VA---LIMG-TMRGTTGYNLQELPYKDCLSLFMKCAFKEG 332 (883)
Q Consensus 262 Ddv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~--v~---~~~~-~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~ 332 (883)
||++...... + +.+...+.. ...|..||+||.... +. .... -......+++++.+.++-.+++...+...+
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~ 297 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG 297 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC
Confidence 9996532211 1 122222211 113456888886532 11 1111 111125789999999999999999885432
Q ss_pred CCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 333 KEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 333 ~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
...+ .++..-|++.+.|..-.+.-
T Consensus 298 ~~l~---~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 298 IDLP---DEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred CCCC---HHHHHHHHcCcCCCHHHHHH
Confidence 2222 35667888888887765443
No 165
>PRK10536 hypothetical protein; Provisional
Probab=97.42 E-value=0.0023 Score=64.23 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=34.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..+.++......+..++.. ..+|.+.|++|+|||+||.++..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999998854 24999999999999999987654
No 166
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.40 E-value=0.0016 Score=73.75 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEe
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMD 262 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlD 262 (883)
..+.|+|..|+|||.|++++.+... ..+...+..++...+... . ...+++.+.+ -=+||||
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~-----~----~~~f~~~y~~-~DLLlID 384 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDG-----K----GDSFRRRYRE-MDILLVD 384 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhc-----c----HHHHHHHhhc-CCEEEEe
Confidence 3589999999999999999987541 112344444444433211 1 1223333332 3478899
Q ss_pred CCCCCChh-hHH-HHHHhcCC-CCCCCEEEEeecCh---------HHHHHHcccCCCCceecCCCChhcHHHHHHHHHhc
Q 038265 263 DVWNEDPR-AWG-ELKSLLLG-GAEGSKILVTTRSN---------KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFK 330 (883)
Q Consensus 263 dv~~~~~~-~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~ 330 (883)
|+...... .|+ .+...+.. ...|..|||||... .+...+.. .-.++++..+.+.-.+++.+++..
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~---GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW---GLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc---CceEEcCCCCHHHHHHHHHHHHHh
Confidence 99654321 222 22222221 12355788888852 12222222 267899999999999999988854
Q ss_pred CCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 331 EGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
.+.... .++..-|++++.+..-.|.
T Consensus 462 r~l~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 462 EQLNAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred cCCCCC---HHHHHHHHHhccCCHHHHH
Confidence 433222 3455666666665544333
No 167
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=5.2e-06 Score=91.51 Aligned_cols=108 Identities=27% Similarity=0.291 Sum_probs=78.9
Q ss_pred HhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCcc-ccCCCcccEeecCCCCCCccCCccccCCcc
Q 038265 554 SCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNS-ICELQSLQTLNLGDCLELEELPKDIRYLVS 632 (883)
Q Consensus 554 ~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 632 (883)
..+.-++.|+.|+|+.|++.... .+..|++|++|||+.|. +..+|.. ...+. |+.|++++| .+..+ .++.+|++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhh
Confidence 34555688899999999988775 77888999999999887 6667651 12333 899999875 44444 37888999
Q ss_pred cCEEEeCCccccccc--cccCCCCCCCeEEeecCCC
Q 038265 633 LRMFVVTTKQKSLLE--SGIGCLSSLRFLMISDCGN 666 (883)
Q Consensus 633 L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~ 666 (883)
|+.||+++|.+.... ..+..+..|..|.|.+|..
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999999998776321 2345567888888888753
No 168
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00037 Score=77.47 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=44.3
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-+.+.+|+++-.++|++++.-..=.++.+.+++..+|++|||||++|+.++...
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 356789999999999999865322344667899999999999999999987655
No 169
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.35 E-value=0.00039 Score=77.57 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=86.4
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCC------cHHHHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDF------GKRQIMTKIIN 229 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~~~~~~~i~~ 229 (883)
-.++.|.+..++++.+.+..+.. .+-...+-+.++|++|+|||++|+++++..... ....++.-...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 35688899999988887642110 011234568999999999999999998875211 00000000000
Q ss_pred HhhCCCCCCCChHHHHHHH----HHH-cCCCceEEEEeCCCCCC-------hhhH-----HHHHHhcCCC--CCCCEEEE
Q 038265 230 SVIGGNHGNLDPDRMQKVL----RDS-LNGKRYLLVMDDVWNED-------PRAW-----GELKSLLLGG--AEGSKILV 290 (883)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l----~~~-l~~kr~LlvlDdv~~~~-------~~~~-----~~l~~~l~~~--~~gs~iiv 290 (883)
.+... ... ..+.....+ ++. -.+++++|+||+++..- ..+. .++...+... ..+..||.
T Consensus 261 eLl~k-yvG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ 338 (512)
T TIGR03689 261 ELLNK-YVG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIG 338 (512)
T ss_pred hhccc-ccc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEe
Confidence 00000 000 111111222 221 13478999999996421 0111 2333333322 13445566
Q ss_pred eecChHHHHHHcc--cCCCCceecCCCChhcHHHHHHHHH
Q 038265 291 TTRSNKVALIMGT--MRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 291 Ttr~~~v~~~~~~--~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
||...+.....-. ..-...+++...+.++..++|..+.
T Consensus 339 ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 339 ASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 6655443221111 1112468999999999999999886
No 170
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.34 E-value=0.0084 Score=62.34 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=93.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC----------CCCcHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ----------KDFGKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----------~~~~~~~~~~~i~~~~~ 232 (883)
.+.+.+|+..+..+..++.... ..-+.+|.|+|..|.|||.+.+.+++.. +-|..+.++..|+....
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc
Confidence 4568899999999998885532 1345667999999999999999998876 56788889999998874
Q ss_pred CCCCCCCCh----HH---HHHHHHH--HcC--CCceEEEEeCCCCCC---hhhHHHHHHhcCCCCCCCEEEEeecChHHH
Q 038265 233 GGNHGNLDP----DR---MQKVLRD--SLN--GKRYLLVMDDVWNED---PRAWGELKSLLLGGAEGSKILVTTRSNKVA 298 (883)
Q Consensus 233 ~~~~~~~~~----~~---~~~~l~~--~l~--~kr~LlvlDdv~~~~---~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 298 (883)
..+...... +. ....+.+ ... ++.++||||+++.-. ..-...+...-.-.....-+|+++--....
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 211111111 11 2222222 122 358999999995421 111111111100111123344444432222
Q ss_pred HH---HcccCCCCceecCCCChhcHHHHHHHHH
Q 038265 299 LI---MGTMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 299 ~~---~~~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
.. +++... .++....-+.+|-.+++.+.-
T Consensus 162 ~y~~n~g~~~i-~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 162 QYLINTGTLEI-VVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HhhcccCCCCc-eEEecCCCCHHHHHHHHhcCC
Confidence 22 233211 355667778888888876643
No 171
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00031 Score=78.52 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=42.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+.+.+|.++..++|++.|.-..-...-..+++.+||++|||||+|++.+++..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 56789999999999999864211122445799999999999999999997755
No 172
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00014 Score=72.14 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=46.9
Q ss_pred ccCCcccEEEecCccccc---cccccCCCCCceEecccCCcccc---ccCccccCCCcccEeecCCCCCC-ccCCccccC
Q 038265 557 SKSKSLRVLVLMNSAIEV---LPRKMGNLRQLRHLDLSGNRKIK---KLPNSICELQSLQTLNLGDCLEL-EELPKDIRY 629 (883)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~L~~~~~~-~~lp~~~~~ 629 (883)
+.+..++.|||.+|.++. +-.-+.++++|++|+++.|+... .+| -.+.+|++|-|.+.... ......+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 456777788888877753 33345677788888887765422 222 23456777777653221 122233445
Q ss_pred CcccCEEEeCCc
Q 038265 630 LVSLRMFVVTTK 641 (883)
Q Consensus 630 l~~L~~L~l~~~ 641 (883)
++.++.|.++.|
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 555566655555
No 173
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0067 Score=64.24 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---CCCcHHHHHHHHHHHhh--------
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---KDFGKRQIMTKIINSVI-------- 232 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~~~~~~~i~~~~~-------- 232 (883)
.+++|-+...+.+...+... .-.+...++|+.|+||+++|..+.+.. ...+.... ..+...-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~-~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIR-RRLEEGNHPDLLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHh-cccccCCCCCEEEEec
Confidence 46899999999999888652 234799999999999999998775543 11000000 00000000
Q ss_pred -----C---------------CCCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCE
Q 038265 233 -----G---------------GNHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSK 287 (883)
Q Consensus 233 -----~---------------~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ 287 (883)
+ ........++. +.+.+.+ .+++-++|+|+++..+......+...+-... .+.
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 0 00011122222 2333433 3566789999998777767777777775544 445
Q ss_pred EEEeecCh-HHHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 288 ILVTTRSN-KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 288 iivTtr~~-~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
+|++|.+. .+..... ..+..+++.++++++..+.+........ .......++..++|.|.....+
T Consensus 156 fILi~~~~~~Ll~TI~--SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIV--SRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHH--hhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 66555543 3332222 2247899999999999999987652111 0111357889999999655443
No 174
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=1.8e-05 Score=69.22 Aligned_cols=102 Identities=22% Similarity=0.314 Sum_probs=61.4
Q ss_pred cccEEEecCccccccccc---cCCCCCceEecccCCccccccCcccc-CCCcccEeecCCCCCCccCCccccCCcccCEE
Q 038265 561 SLRVLVLMNSAIEVLPRK---MGNLRQLRHLDLSGNRKIKKLPNSIC-ELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 636 (883)
Q Consensus 561 ~L~~L~l~~~~~~~lp~~---~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 636 (883)
.+..++|++|.+-.+++. +....+|+..+|++|. .+.+|+.+. +.+.+++|++++ +.+..+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 345566666666544443 3344456666777665 555665554 344667777765 4566667667777777777
Q ss_pred EeCCccccccccccCCCCCCCeEEeecC
Q 038265 637 VVTTKQKSLLESGIGCLSSLRFLMISDC 664 (883)
Q Consensus 637 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 664 (883)
+++.|.+...|..+..+.+|-.|+..++
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCC
Confidence 7777776666655555666666655543
No 175
>PRK08116 hypothetical protein; Validated
Probab=97.26 E-value=0.00088 Score=69.29 Aligned_cols=97 Identities=24% Similarity=0.310 Sum_probs=55.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCC--C-----CcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQK--D-----FGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDV 264 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~--~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv 264 (883)
..+.++|.+|+|||.||.++++... . .+...++..+........ ..+ ...+.+.+.+-. ||||||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~--~~~----~~~~~~~l~~~d-lLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG--KED----ENEIIRSLVNAD-LLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc--ccc----HHHHHHHhcCCC-EEEEecc
Confidence 4689999999999999999988641 1 133444444443322111 111 122334444444 8999999
Q ss_pred CCCChhhHHH--HHHhcCC-CCCCCEEEEeecCh
Q 038265 265 WNEDPRAWGE--LKSLLLG-GAEGSKILVTTRSN 295 (883)
Q Consensus 265 ~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 295 (883)
......+|.. +...+.. -..|..+||||...
T Consensus 188 g~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 6554455644 2222221 12456799998753
No 176
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.019 Score=60.69 Aligned_cols=167 Identities=10% Similarity=0.067 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------CCCcHHHHHHHHHHHhhCC-------CCC
Q 038265 173 GEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------KDFGKRQIMTKIINSVIGG-------NHG 237 (883)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~~~~~~i~~~~~~~-------~~~ 237 (883)
.+.+...+..+ .-.+...++|+.|+||+++|+.+.... ..++.-.....+...-.++ ...
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNK 85 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCC
Confidence 34555555432 335788899999999999998886543 1122222222222111110 111
Q ss_pred CCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCcee
Q 038265 238 NLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTGYN 311 (883)
Q Consensus 238 ~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~~~ 311 (883)
....++..+ +.+.+ .+++=++|+|+++.........+...+-...+++.+|++|.++. +..... ..+..+.
T Consensus 86 ~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~--SRC~~~~ 162 (325)
T PRK06871 86 DIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY--SRCQTWL 162 (325)
T ss_pred CCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH--hhceEEe
Confidence 223343333 22222 25566888999988887777778877777777888888887653 222211 1236899
Q ss_pred cCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch
Q 038265 312 LQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL 355 (883)
Q Consensus 312 l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (883)
+.++++++..+.+..... . .. ..+...+..++|.|+
T Consensus 163 ~~~~~~~~~~~~L~~~~~---~--~~---~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSS---A--EI---SEILTALRINYGRPL 198 (325)
T ss_pred CCCCCHHHHHHHHHHHhc---c--Ch---HHHHHHHHHcCCCHH
Confidence 999999999988887541 1 11 124567788999996
No 177
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.21 E-value=0.0018 Score=67.86 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=43.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHH-----cCCCceEEEEeC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDS-----LNGKRYLLVMDD 263 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDd 263 (883)
..++.++|||++|.|||.+|+++++.....-..---.++... +...++..+.+.++.. -+++.++|++|+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk-----~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE-----NAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC-----cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 557899999999999999999999886321111111111111 1111222222333222 246889999999
Q ss_pred CCC
Q 038265 264 VWN 266 (883)
Q Consensus 264 v~~ 266 (883)
++.
T Consensus 221 IDA 223 (413)
T PLN00020 221 LDA 223 (413)
T ss_pred hhh
Confidence 863
No 178
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.20 E-value=3.7e-05 Score=88.41 Aligned_cols=132 Identities=26% Similarity=0.324 Sum_probs=79.7
Q ss_pred CCCCceEecccCCccccc--cCccccCCCcccEeecCCC-CCCccCC----ccccCCcccCEEEeCCcc-ccc--ccccc
Q 038265 581 NLRQLRHLDLSGNRKIKK--LPNSICELQSLQTLNLGDC-LELEELP----KDIRYLVSLRMFVVTTKQ-KSL--LESGI 650 (883)
Q Consensus 581 ~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~-~~~~~lp----~~~~~l~~L~~L~l~~~~-~~~--~~~~~ 650 (883)
.++.|+.|.+.++..+.. +-.....+++|+.|++++| ......+ .....+.+|+.|+++.+. ++. +....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478899999988876664 3344667899999999873 3322222 233456788888888766 331 11112
Q ss_pred CCCCCCCeEEeecCCCccc--cccccccCcccceeeeccccCCCC--CcccCCCCCCccEEEeccC
Q 038265 651 GCLSSLRFLMISDCGNLEY--LFEDIDQLSVLRSLVINSCPRLIS--LPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 651 ~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~--l~~~l~~l~~L~~L~L~~~ 712 (883)
..+++|+.|.+.+|..++. +......+++|++|+|++|..+.. +.....++++|+.|.+..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 2367888888777764321 222335677788888887776532 3333445666666554443
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0015 Score=75.43 Aligned_cols=119 Identities=20% Similarity=0.367 Sum_probs=80.6
Q ss_pred CCccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHH-HHHHHh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMT-KIINSV 231 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~-~i~~~~ 231 (883)
...++|-++.+..+.+.+..... +......+....|+.|||||-||+++.... -.|++.+... .-...+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHH
Confidence 35789999999999888765321 223445688889999999999998886543 4566666654 344555
Q ss_pred hCCCCCCCChHHHHHHHHHHcCCCce-EEEEeCCCCCChhhHHHHHHhcCCC
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNGKRY-LLVMDDVWNEDPRAWGELKSLLLGG 282 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~kr~-LlvlDdv~~~~~~~~~~l~~~l~~~ 282 (883)
.|...+-...++ .-.+-+..++++| +|.||.+...+.+-..-+...|.++
T Consensus 570 IGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 570 IGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred hCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 555444333222 2345566677877 8889999887776666666666554
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0034 Score=67.53 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=79.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccCC---------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEE
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQK---------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLV 260 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llv 260 (883)
....+.|||..|.|||.|++++.+... ......+...++..+.. .-.+.+++.. .-=+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~---------~~~~~Fk~~y--~~dlll 180 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD---------NEMEKFKEKY--SLDLLL 180 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh---------hhHHHHHHhh--ccCeee
Confidence 467899999999999999999988651 12334444444444332 1123444444 334889
Q ss_pred EeCCCCCCh-hhHH----HHHHhcCCCCCCCEEEEeecC---------hHHHHHHcccCCCCceecCCCChhcHHHHHHH
Q 038265 261 MDDVWNEDP-RAWG----ELKSLLLGGAEGSKILVTTRS---------NKVALIMGTMRGTTGYNLQELPYKDCLSLFMK 326 (883)
Q Consensus 261 lDdv~~~~~-~~~~----~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~ 326 (883)
+||++-... ..|+ .+...+.. .|-.||+|++. +.+....... -.+++.+++.+.....+.+
T Consensus 181 IDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~G---l~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 181 IDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWG---LVVEIEPPDDETRLAILRK 255 (408)
T ss_pred echHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhce---eEEeeCCCCHHHHHHHHHH
Confidence 999964221 1122 22223333 23389999964 2333334333 6899999999999999999
Q ss_pred HHhcCCCC
Q 038265 327 CAFKEGKE 334 (883)
Q Consensus 327 ~a~~~~~~ 334 (883)
.+...+..
T Consensus 256 ka~~~~~~ 263 (408)
T COG0593 256 KAEDRGIE 263 (408)
T ss_pred HHHhcCCC
Confidence 77544443
No 181
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.18 E-value=0.00037 Score=73.46 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=42.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+++|.++.++++++++.....+.+...++++++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999976543334556899999999999999999886654
No 182
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0056 Score=67.19 Aligned_cols=198 Identities=14% Similarity=0.097 Sum_probs=107.3
Q ss_pred cCCccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSD------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
.-.++=|.++.+.++.+++..-.. -+-...+=|.++|++|.|||.||+++.++..-.-..---.+++....|
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG-- 265 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG-- 265 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc--
Confidence 345778999999999888754211 112345778999999999999999999887322111122334433332
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-hhhH----------HHHHHhcCC----CCCCCEEEE---eecChHH
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-PRAW----------GELKSLLLG----GAEGSKILV---TTRSNKV 297 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-~~~~----------~~l~~~l~~----~~~gs~iiv---Ttr~~~v 297 (883)
.+++.+.+.+.+.-..-.+++++|+++-.. ..+| .++...+.. ...|-.||| |+|-..+
T Consensus 266 ---ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 266 ---ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred ---ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 345556666666777889999999996421 1111 123222221 112333433 4443222
Q ss_pred HHHHc-ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 298 ALIMG-TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 298 ~~~~~-~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
-.... ...-++-+.+...++..-.+++...+.+-.....-++.++|+.---+.|--=.|+...|+..
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 11111 11123567777777777777777766544443333444433322222233334444444443
No 183
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.17 E-value=0.0037 Score=75.07 Aligned_cols=182 Identities=16% Similarity=0.088 Sum_probs=97.3
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCcHHHHHHHHHHHhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFGKRQIMTKIINSVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~~~~i~~~~~~~ 234 (883)
-.++.|.+...+.+.+.+.-+.. .+-...+-|.++|++|+|||++|+++.+... .|-.. --.+++..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v-~~~~l~~~---- 526 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV-RGPEILSK---- 526 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE-ehHHHhhc----
Confidence 34678888888777776532110 0112345688999999999999999988752 11000 00111111
Q ss_pred CCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC------C--h----hhHHHHHHhcCCC--CCCCEEEEeecChHHHHH
Q 038265 235 NHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE------D--P----RAWGELKSLLLGG--AEGSKILVTTRSNKVALI 300 (883)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~------~--~----~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~ 300 (883)
....+...+...+...-...+.+|++|+++.. + . ....++...+.+. ..+--||.||..++....
T Consensus 527 -~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 527 -WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred -ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 11112233333444444567899999998531 0 0 0112233333321 234456667766554332
Q ss_pred Hcc--cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 301 MGT--MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 301 ~~~--~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
.-. ..-...+.+...+.++-.++|..+..+.......++ ..+++.+.|.-
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 211 122367888999999999999876533221111122 45667777654
No 184
>PF14516 AAA_35: AAA-like domain
Probab=97.17 E-value=0.016 Score=62.22 Aligned_cols=189 Identities=15% Similarity=0.096 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-----------------CCC-cHHHHHH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-----------------KDF-GKRQIMT 225 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-----------------~~~-~~~~~~~ 225 (883)
+..|.|...-+++.+.+..+ ...+.|.|+-.+|||+|..++.+.. ..+ +...++.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHH
Confidence 34578886666677777542 3489999999999999998886543 112 3444555
Q ss_pred HHHHHhhCC----CC-------CCCChHHHHHHHHHHc---CCCceEEEEeCCCCCCh-----hhHHHHHHhcCCCC---
Q 038265 226 KIINSVIGG----NH-------GNLDPDRMQKVLRDSL---NGKRYLLVMDDVWNEDP-----RAWGELKSLLLGGA--- 283 (883)
Q Consensus 226 ~i~~~~~~~----~~-------~~~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~-----~~~~~l~~~l~~~~--- 283 (883)
.++..+... .. ...........+.+.+ ..++++|+||+++..-. .++-.+.+.+-...
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 554444211 10 0011223334444432 25899999999964321 12222222221111
Q ss_pred --CCCEEEEeecChHHHHHH----cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 284 --EGSKILVTTRSNKVALIM----GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 284 --~gs~iivTtr~~~v~~~~----~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
..+-.+|........... ........+.+++++.+|..+|...+... ..+ ...++|...++|+|.-+
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~---~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQ---EQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCH---HHHHHHHHHHCCCHHHH
Confidence 111122222211111111 11122357899999999999998876421 111 22689999999999999
Q ss_pred HHHHhhhcC
Q 038265 358 RTVGSLLYG 366 (883)
Q Consensus 358 ~~~~~~L~~ 366 (883)
..++..+..
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 999999965
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.012 Score=62.17 Aligned_cols=171 Identities=14% Similarity=0.172 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-----CCCcHHHHHHHHHHHhhCC--------CC---
Q 038265 173 GEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-----KDFGKRQIMTKIINSVIGG--------NH--- 236 (883)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-----~~~~~~~~~~~i~~~~~~~--------~~--- 236 (883)
.+++...+..+ .-.+.+.++|+.|+||+++|..+.... ...........+...-.++ ..
T Consensus 13 ~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~ 87 (319)
T PRK08769 13 YDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD 87 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc
Confidence 44555555432 335678999999999999998886544 1111111111111110000 00
Q ss_pred ---CCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCC
Q 038265 237 ---GNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGT 307 (883)
Q Consensus 237 ---~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~ 307 (883)
.....+++.+ +.+.+ .+++=++|+|+++..+...-..+...+-....++.+|++|.+.. +..... ..+
T Consensus 88 k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr--SRC 164 (319)
T PRK08769 88 KLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR--SRC 164 (319)
T ss_pred cccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH--hhh
Confidence 0112333222 22222 24566899999987776666667766666666787888777543 222211 123
Q ss_pred CceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 308 TGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 308 ~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
..+.+.+++.+++.+.+... +. . ...+..++..++|.|+....+
T Consensus 165 q~i~~~~~~~~~~~~~L~~~----~~--~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQ----GV--S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHc----CC--C---hHHHHHHHHHcCCCHHHHHHH
Confidence 67899999999998887643 11 1 123567899999999865544
No 186
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.15 E-value=0.00042 Score=49.02 Aligned_cols=34 Identities=44% Similarity=0.673 Sum_probs=20.8
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCC
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCL 618 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 618 (883)
+|++|++++|. +..+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 56667777665 45566666667777777776653
No 187
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.14 E-value=0.0029 Score=75.33 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=40.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+.+.+|.++..++|.+++............++.++|++|+||||+|+.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999998863211111344689999999999999999997654
No 188
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.12 E-value=0.0012 Score=67.12 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=47.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC----------------CCCcHHHHHHHHHHHhhCCCCCCCChH------HHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ----------------KDFGKRQIMTKIINSVIGGNHGNLDPD------RMQKV 247 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~ 247 (883)
....++|+|++|+|||||++.+++.. ..++..+++..+...+........... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999865 225667777777433322222211111 11222
Q ss_pred HHHH-cCCCceEEEEeCCC
Q 038265 248 LRDS-LNGKRYLLVMDDVW 265 (883)
Q Consensus 248 l~~~-l~~kr~LlvlDdv~ 265 (883)
.+.. -.++++++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 24799999999984
No 189
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.11 E-value=0.0017 Score=78.23 Aligned_cols=129 Identities=18% Similarity=0.289 Sum_probs=76.8
Q ss_pred CCccccchhhHHHHHHHHhcCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccC----C---CCcHHHHHH-HHHHHh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTS---DGESETVSVIPIVGIGGLGKTALAKLVYNDQ----K---DFGKRQIMT-KIINSV 231 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~---~~~~~~~~~-~i~~~~ 231 (883)
...++|.++.++.+.+.+.... ........++.++|+.|+|||.+|+.+.... . .++...+.. .-...+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l 644 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRL 644 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccc
Confidence 3578999999999998885421 1122334578999999999999998775443 1 223333321 112223
Q ss_pred hCCCCCCCC---hHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCC-----------CCCEEEEeecC
Q 038265 232 IGGNHGNLD---PDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRS 294 (883)
Q Consensus 232 ~~~~~~~~~---~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 294 (883)
.+....... ...+...++ +...-+|+||++...+...++.+...+..+. ..+-||+||..
T Consensus 645 ~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 645 KGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred cCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 333222111 122223333 2455699999998877777777766665442 45667777764
No 190
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.0098 Score=63.82 Aligned_cols=155 Identities=10% Similarity=0.137 Sum_probs=91.5
Q ss_pred cccc-chhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------CCCcHHHHHHHHHHHhhCC-
Q 038265 165 DIIG-RYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------KDFGKRQIMTKIINSVIGG- 234 (883)
Q Consensus 165 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~~~~~~i~~~~~~~- 234 (883)
.++| -+..++.+...+... .-.+...++|+.|+||||+|+.+.+.. ..++.-.....+...-..+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 555666666666432 345678999999999999998885543 1111112222221111100
Q ss_pred -----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 235 -----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 235 -----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
.......+++.+.+... ..+.+=++|+|+++..+......+...+-...+++.+|++|.++. +.... .
T Consensus 81 ~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI--r 158 (329)
T PRK08058 81 HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI--L 158 (329)
T ss_pred EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH--H
Confidence 01112334443333221 234556799999977776666677777777667888888887643 22211 1
Q ss_pred CCCCceecCCCChhcHHHHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMK 326 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~ 326 (883)
..+..+++.+++.++..+.+..
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHH
Confidence 2237899999999998777764
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.0028 Score=58.76 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+.|+|++|+||||+|+.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999998776
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.09 E-value=0.0038 Score=60.01 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=37.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-.++||.++.++++.-...+ .+.+-+.|.||+|+||||-+..+.+..
T Consensus 26 l~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 35799999999988766544 456778999999999999988876543
No 193
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.05 E-value=0.0013 Score=60.87 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=64.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHH
Q 038265 167 IGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQK 246 (883)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (883)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++......... +......... .+
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~---------~~~~~~~~~~----~~ 63 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGP---------FIVIDCASLP----AE 63 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS----------CCCCCHHCTC----HH
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCC---------eEEechhhCc----HH
Confidence 577778888887775532 233467999999999999999998875321000 0000000011 11
Q ss_pred HHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCC-CCCCCEEEEeecCh
Q 038265 247 VLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG-GAEGSKILVTTRSN 295 (883)
Q Consensus 247 ~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~ 295 (883)
.+.+ .+.--++|+|++.-+...-..+...+.. .....|+|.||+..
T Consensus 64 ~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 64 LLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp HHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred HHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 2222 2555678999987776566666666653 35678999999853
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.04 E-value=0.00042 Score=80.85 Aligned_cols=129 Identities=25% Similarity=0.312 Sum_probs=79.0
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccc--ccccccCCCCCceEecccCCccccccCccccCCCccc
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIE--VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQ 610 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 610 (883)
.+|+.|.+.. .......++...-..+|.|+.|.+++-.+. .+..-..++++|..||+|++. +..+ ..++.+++|+
T Consensus 122 ~nL~~LdI~G-~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISG-SELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccc-cchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 4566666652 122344455555566888888888876663 333445677888888888764 6666 4578888888
Q ss_pred EeecCCCCCCccCC--ccccCCcccCEEEeCCccccccc-------cccCCCCCCCeEEeecCC
Q 038265 611 TLNLGDCLELEELP--KDIRYLVSLRMFVVTTKQKSLLE-------SGIGCLSSLRFLMISDCG 665 (883)
Q Consensus 611 ~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~ 665 (883)
+|.+.+- ....-+ ..+.+|++|+.||+|.......+ ..-..+|+|+.||.++..
T Consensus 199 ~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 8888652 222211 35567888888888765443222 111236677777776644
No 195
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.021 Score=61.10 Aligned_cols=170 Identities=15% Similarity=0.096 Sum_probs=102.6
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------CCCcHHHHHHHHHHHhh-------CCC-
Q 038265 172 DGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------KDFGKRQIMTKIINSVI-------GGN- 235 (883)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~~~~~~i~~~~~-------~~~- 235 (883)
..+++...+..+ .-.+-+.+.|+.|+||+++|..+.... ..++.-.....+..... +..
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG 84 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc
Confidence 345566666432 446788999999999999998875543 12222222222221111 111
Q ss_pred CCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCc
Q 038265 236 HGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTG 309 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~ 309 (883)
......++..+.. +.+ .+++=++|+|+++.........+...+-...+++.+|++|.+.+ +..... ..+..
T Consensus 85 ~~~I~idqiR~l~-~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr--SRCq~ 161 (334)
T PRK07993 85 KSSLGVDAVREVT-EKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR--SRCRL 161 (334)
T ss_pred cccCCHHHHHHHH-HHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH--hcccc
Confidence 0123344444333 222 35666899999988777777777777777667788888777644 332221 12367
Q ss_pred eecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 310 YNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 310 ~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
+.+.+++.+++.+.+.... +. . .+.+..++..++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~--~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TM--S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CC--C---HHHHHHHHHHcCCCHHHH
Confidence 8999999999988776532 11 1 123567889999999643
No 196
>PRK08181 transposase; Validated
Probab=97.01 E-value=0.002 Score=66.17 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC--C-----CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ--K-----DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDV 264 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~--~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv 264 (883)
.-+.++|++|+|||.||.++.+.. . -++...++..+.... ...+.+. .+ +.+ .+-=||||||+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~-----~~~~~~~---~l-~~l-~~~dLLIIDDl 176 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR-----RELQLES---AI-AKL-DKFDLLILDDL 176 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH-----hCCcHHH---HH-HHH-hcCCEEEEecc
Confidence 358999999999999999987643 1 123344444443221 1112222 12 222 23359999999
Q ss_pred CCCChhhHH--HHHHhcCCCCCCCEEEEeecCh
Q 038265 265 WNEDPRAWG--ELKSLLLGGAEGSKILVTTRSN 295 (883)
Q Consensus 265 ~~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 295 (883)
.......|. .+...+...-.+..+||||..+
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 654333332 2333332211123688888754
No 197
>PRK06526 transposase; Provisional
Probab=97.00 E-value=0.0012 Score=67.55 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC--CCC-----cHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ--KDF-----GKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDV 264 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~--~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv 264 (883)
.-+.++|++|+|||+||.++.... ..+ ....++..+.... .. ......+.+ + .+.-+||+||+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~----~~----~~~~~~l~~-l-~~~dlLIIDD~ 168 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH----HA----GRLQAELVK-L-GRYPLLIVDEV 168 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH----hc----CcHHHHHHH-h-ccCCEEEEccc
Confidence 468999999999999999886654 111 2223333332211 00 111222222 2 23458999999
Q ss_pred CCCChhhHH--HHHHhcCC-CCCCCEEEEeecCh
Q 038265 265 WNEDPRAWG--ELKSLLLG-GAEGSKILVTTRSN 295 (883)
Q Consensus 265 ~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 295 (883)
.......+. .+...+.. ...+ .+||||..+
T Consensus 169 g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 169 GYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 654322222 22332221 1224 488888754
No 198
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0013 Score=62.09 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=14.2
Q ss_pred ceEecccCCccccccCccccCCCcccEeecCCCC
Q 038265 585 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCL 618 (883)
Q Consensus 585 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 618 (883)
...+||++|. +..++. +..++.|.+|.|++|.
T Consensus 44 ~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr 75 (233)
T KOG1644|consen 44 FDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR 75 (233)
T ss_pred cceecccccc-hhhccc-CCCccccceEEecCCc
Confidence 4445555443 333332 3344555555554443
No 199
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.99 E-value=0.0032 Score=70.46 Aligned_cols=180 Identities=16% Similarity=0.078 Sum_probs=92.2
Q ss_pred CccccchhhHHHHHHHHh---cC-CCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC----CcHHHHHHHHHHHhhCCC
Q 038265 164 SDIIGRYEDGEKIIELLM---QT-SDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD----FGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~---~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~~~~~~~i~~~~~~~~ 235 (883)
.++.|.+.-.+.+.+... .. ..-+-...+-|.++|++|+|||.+|+++.+.... .+...+. ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~----~~----- 298 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF----GG----- 298 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc----cc-----
Confidence 457787665555543211 00 0011134567899999999999999999887521 1111111 11
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh-------h-hH----HHHHHhcCCCCCCCEEEEeecChHHHHH-H-
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP-------R-AW----GELKSLLLGGAEGSKILVTTRSNKVALI-M- 301 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-------~-~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~-~- 301 (883)
....+...+.+.+...-...+++|++|+++..-. . .- ..+...+.....+--||.||.+...... +
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~all 378 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEIL 378 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHh
Confidence 1111223333344433345789999999963210 0 00 1122222222334445567765432211 1
Q ss_pred cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 302 GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 302 ~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
....-+..+.++..+.++-.++|..+..+.......+ .....+++.+.|.-
T Consensus 379 R~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~--~dl~~La~~T~GfS 429 (489)
T CHL00195 379 RKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK--YDIKKLSKLSNKFS 429 (489)
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccc--cCHHHHHhhcCCCC
Confidence 1112235788999999999999988874432211111 11245666665544
No 200
>PRK09183 transposase/IS protein; Provisional
Probab=96.95 E-value=0.0017 Score=66.95 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=50.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC--CC-----CcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ--KD-----FGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
...+.|+|++|+|||+||..+.... .. ++...+...+....... .....+.+. ..+.-++|+||
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~--------~~~~~~~~~-~~~~dlLiiDd 172 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQG--------RYKTTLQRG-VMAPRLLIIDE 172 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCC--------cHHHHHHHH-hcCCCEEEEcc
Confidence 3468899999999999999986543 11 12233333332221110 111222222 23456999999
Q ss_pred CCCCChhhHH--HHHHhcCCC-CCCCEEEEeecCh
Q 038265 264 VWNEDPRAWG--ELKSLLLGG-AEGSKILVTTRSN 295 (883)
Q Consensus 264 v~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 295 (883)
+.......+. .+...+... ..++ +||||...
T Consensus 173 lg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 173 IGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred cccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 9754333332 233333211 2344 88888653
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.95 E-value=0.0029 Score=65.21 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=31.5
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHH
Q 038265 167 IGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLV 211 (883)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v 211 (883)
-+|..+..--.++|.+ +++..|.+.|.+|.|||.||.++
T Consensus 227 ~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 227 RPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred CcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHH
Confidence 3566666667788876 55889999999999999999665
No 202
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.93 E-value=0.0022 Score=56.15 Aligned_cols=21 Identities=48% Similarity=0.596 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 038265 194 IPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~ 214 (883)
|-|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987543
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.92 E-value=0.0034 Score=75.32 Aligned_cols=184 Identities=18% Similarity=0.141 Sum_probs=94.8
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
-+++.|.++.++++.+.+..+-. -+-...+-|.++|++|+|||+||+++++.....-..--..++...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~----- 251 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK----- 251 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc-----
Confidence 34688999999998887642210 011234678899999999999999998765211000000011111
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-----------hhhHHHHHHhcCCC-CCCCEEEE-eecChHHH-HHH
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLLGG-AEGSKILV-TTRSNKVA-LIM 301 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~iiv-Ttr~~~v~-~~~ 301 (883)
........+...+.........+|+||+++... .....++...+... ..+..++| ||....-. ...
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al 331 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPAL 331 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHH
Confidence 111122333344444445667899999985421 01112333333322 22334444 44433211 111
Q ss_pred cc-cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch
Q 038265 302 GT-MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL 355 (883)
Q Consensus 302 ~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (883)
.. ..-...+.+...+.++-.+++............ .....+++.+.|.--
T Consensus 332 ~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 332 RRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred hCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 10 011245778888888888888865522111111 123567777777653
No 204
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.91 E-value=0.0043 Score=74.27 Aligned_cols=117 Identities=19% Similarity=0.348 Sum_probs=67.9
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----CCcHHHHHH-HHHHHhhCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQK----DFGKRQIMT-KIINSVIGGN 235 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~~~~~~-~i~~~~~~~~ 235 (883)
..++|.++.++.+.+.+..... .......++.++|+.|+|||+||+.++.... .++...... .....+.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 4688999888888888764210 1112345688999999999999999977651 122222211 1122233222
Q ss_pred CCCCChHHHHHHHHHHcCCC-ceEEEEeCCCCCChhhHHHHHHhcCC
Q 038265 236 HGNLDPDRMQKVLRDSLNGK-RYLLVMDDVWNEDPRAWGELKSLLLG 281 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~k-r~LlvlDdv~~~~~~~~~~l~~~l~~ 281 (883)
......+. ...+.+.++.+ .-+++||+++..+...+..+...+..
T Consensus 534 ~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 534 PGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred CCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 22111111 12233344333 45999999988887777777776654
No 205
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.91 E-value=0.00012 Score=64.29 Aligned_cols=92 Identities=23% Similarity=0.390 Sum_probs=72.0
Q ss_pred hhccCCcccEEEecCccccccccccCC-CCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCccc
Q 038265 555 CISKSKSLRVLVLMNSAIEVLPRKMGN-LRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSL 633 (883)
Q Consensus 555 ~~~~~~~L~~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L 633 (883)
.+.....|...+|++|.++.+|+.+.. .+.++.|++++|. +..+|..+..++.|+.|+++.| .+...|..+..|.+|
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKL 125 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhH
Confidence 455667788889999999888887643 4578889998876 7788888888999999999875 455667777778888
Q ss_pred CEEEeCCcccccccc
Q 038265 634 RMFVVTTKQKSLLES 648 (883)
Q Consensus 634 ~~L~l~~~~~~~~~~ 648 (883)
-+|+..+|....++-
T Consensus 126 ~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 126 DMLDSPENARAEIDV 140 (177)
T ss_pred HHhcCCCCccccCcH
Confidence 888888887765553
No 206
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.91 E-value=0.0016 Score=71.27 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++||++.++.+...+... .-|.|.|++|+|||++|+.+....
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHHh
Confidence 4899999999888877553 258899999999999999998643
No 207
>PHA00729 NTP-binding motif containing protein
Probab=96.90 E-value=0.0019 Score=63.66 Aligned_cols=74 Identities=23% Similarity=0.186 Sum_probs=40.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCC-Cc-eEEEEeCC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNG-KR-YLLVMDDV 264 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr-~LlvlDdv 264 (883)
+...|.|+|.+|+||||||..+.+... +....+..+...-..+......+.+++...+.....+ .+ =+||+||+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~-~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~ 91 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF-WKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDA 91 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH-hhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 356799999999999999999876531 0000000000000011111223556666666655433 22 38999994
No 208
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.89 E-value=0.0019 Score=70.20 Aligned_cols=44 Identities=25% Similarity=0.189 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++++.++..+.+...|.. .+.|.++|++|+|||++|+++++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4678889999999998854 2467889999999999999987654
No 209
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.044 Score=57.82 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHHHHHHHhhCC-------C-CC
Q 038265 173 GEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMTKIINSVIGG-------N-HG 237 (883)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~~i~~~~~~~-------~-~~ 237 (883)
.+++...+... .-.+.+.++|+.|+||+++|+.+.... ...+.-..-..+.....++ . ..
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 44555555332 345789999999999999998886543 1111111122222111110 0 11
Q ss_pred CCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCcee
Q 038265 238 NLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTGYN 311 (883)
Q Consensus 238 ~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~~~ 311 (883)
....+++.+ +.+.+ .+++=++|+|+++.........+...+-...+++.+|++|.+++ +..... ..+..+.
T Consensus 87 ~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~--SRCq~~~ 163 (319)
T PRK06090 87 SITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV--SRCQQWV 163 (319)
T ss_pred cCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH--hcceeEe
Confidence 233444433 33333 23455889999988877777778877777667787777777643 332222 2246899
Q ss_pred cCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 312 LQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 312 l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
+.+++.+++.+.+.... .+ .+..++..++|.|+....+
T Consensus 164 ~~~~~~~~~~~~L~~~~----~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 164 VTPPSTAQAMQWLKGQG----IT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCCCCHHHHHHHHHHcC----Cc-------hHHHHHHHcCCCHHHHHHH
Confidence 99999999988886531 11 1356788999999866544
No 210
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.87 E-value=0.0036 Score=76.10 Aligned_cols=130 Identities=19% Similarity=0.317 Sum_probs=75.1
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHHH-HHHHhh
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMTK-IINSVI 232 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~~-i~~~~~ 232 (883)
..++|.+..++.+...+..... .......++.++|+.|+|||++|+.+.... -.++....... ....+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 4689999999999998865321 111224578899999999999999997643 11122222111 112222
Q ss_pred CCCCCCCChHHHHHHHHHHcC-CCceEEEEeCCCCCChhhHHHHHHhcCCCC-----------CCCEEEEeecC
Q 038265 233 GGNHGNLDPDRMQKVLRDSLN-GKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRS 294 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 294 (883)
+........++ ...+.+.++ ....+|+||++...+...+..+...+..+. ..+-||+||..
T Consensus 645 g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 645 GAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred CCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 22221111111 012223332 333599999998888877777777664431 23447777764
No 211
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.82 E-value=0.002 Score=68.45 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=44.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC--------------CCC--cHHHHHHHHHHHhhCCCCCCCChH------HHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ--------------KDF--GKRQIMTKIINSVIGGNHGNLDPD------RMQKV 247 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~--------------~~~--~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~ 247 (883)
.....+|+|++|+||||||+.+|+.. ..+ +...++..+...+........... ...+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999865 222 344555555432222211111111 11111
Q ss_pred HHHH-cCCCceEEEEeCCC
Q 038265 248 LRDS-LNGKRYLLVMDDVW 265 (883)
Q Consensus 248 l~~~-l~~kr~LlvlDdv~ 265 (883)
.+.. -.+++++|++|++.
T Consensus 248 Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHcCCCEEEEEEChH
Confidence 2222 36799999999984
No 212
>PRK08118 topology modulation protein; Reviewed
Probab=96.81 E-value=0.0025 Score=60.85 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=40.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccCC--CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQK--DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVW 265 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~ 265 (883)
.|.|+|++|+||||||+.+++... .++...+.. .......+.++....+.+.+++.. .|+|+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~-------~~~w~~~~~~~~~~~~~~~~~~~~--wVidG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW-------KPNWEGVPKEEQITVQNELVKEDE--WIIDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc-------ccCCcCCCHHHHHHHHHHHhcCCC--EEEeCCc
Confidence 589999999999999999998752 122222221 112223334455556666666666 4778874
No 213
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.81 E-value=0.023 Score=58.84 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-|.+.|++|+|||++|+.+....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 56689999999999999998643
No 214
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.80 E-value=0.0081 Score=57.04 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=74.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---C----CCcHHHHHHHHHHHhhC------C
Q 038265 168 GRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---K----DFGKRQIMTKIINSVIG------G 234 (883)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~----~~~~~~~~~~i~~~~~~------~ 234 (883)
|-+...+.+.+.+... .-.+.+.++|+.|+||+++|..+.+.. . .++.......+...... .
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4456666777776542 335678999999999999998886654 1 11111222222221111 1
Q ss_pred CC--CCCChHHHHHHHHHHcC-----CCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH
Q 038265 235 NH--GNLDPDRMQKVLRDSLN-----GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 235 ~~--~~~~~~~~~~~l~~~l~-----~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
.. .....++.. .+.+.+. +++=++|+|+++.........+...+-....++.+|++|++..
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred ccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 11 123445544 4444443 3456899999988888888888888877778899999998754
No 215
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.79 E-value=0.0056 Score=74.10 Aligned_cols=118 Identities=19% Similarity=0.322 Sum_probs=68.5
Q ss_pred CCccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccC----C---CCcHHHHHHH-HHHHh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQ----K---DFGKRQIMTK-IINSV 231 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~---~~~~~~~~~~-i~~~~ 231 (883)
...++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++.. . .++...+... ....+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L 646 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence 34689999999998888764210 111223578899999999999999997643 1 1223333221 22333
Q ss_pred hCCCCCCCChHHHHHHHHHHcCC-CceEEEEeCCCCCChhhHHHHHHhcCC
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNG-KRYLLVMDDVWNEDPRAWGELKSLLLG 281 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~~~~~~~~l~~~l~~ 281 (883)
.+........+. ...+.+.++. ..-+|+||++...+...+..+...+..
T Consensus 647 iG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 647 VGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 332222111111 1123333333 336999999987777777777766643
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0064 Score=70.42 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=86.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHH-------HHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIM-------TKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~-------~~i~~~~~~~~~ 236 (883)
+.++||++++.++++.|..-.. + --.++|.+|||||++|.-++.+.-.-++-..+ .++..-..+...
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---N---NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGaky 243 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---N---NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKY 243 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---C---CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccc
Confidence 3589999999999999976431 1 12567999999999997666554211111111 111121223333
Q ss_pred CCCChHHHHHHHHHHc-CCCceEEEEeCCCCC-------C--hhhHHHHHHhcCCCCCCCEEEEeecChHHHHHH----c
Q 038265 237 GNLDPDRMQKVLRDSL-NGKRYLLVMDDVWNE-------D--PRAWGELKSLLLGGAEGSKILVTTRSNKVALIM----G 302 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~-------~--~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~----~ 302 (883)
.. +.++..+.+.+.+ +..++.+++|.++.. . .+.-.-+++++..+ .--.|=.||-++ .-+.. .
T Consensus 244 RG-eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~E-YRk~iEKD~A 320 (786)
T COG0542 244 RG-EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLDE-YRKYIEKDAA 320 (786)
T ss_pred cC-cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHHH-HHHHhhhchH
Confidence 32 3444444444444 456899999998642 0 11222233333332 222344455432 22111 1
Q ss_pred ccCCCCceecCCCChhcHHHHHHHHH
Q 038265 303 TMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 303 ~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
.....+.+.|...+.+++..+++...
T Consensus 321 L~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 321 LERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 11223788999999999999988655
No 217
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.77 E-value=0.00043 Score=67.97 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=56.9
Q ss_pred hccCCcccEEEecCcccc-----ccccccCCCCCceEecccCCcccc----ccCc-------cccCCCcccEeecCCCCC
Q 038265 556 ISKSKSLRVLVLMNSAIE-----VLPRKMGNLRQLRHLDLSGNRKIK----KLPN-------SICELQSLQTLNLGDCLE 619 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~-------~~~~l~~L~~L~L~~~~~ 619 (883)
+..+..+..++||+|.|. .+...+.+-.+|+..+++.- +++ ++|+ .+-+||.|+..+||+|..
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 334677788888888774 34455566667777777643 222 2222 355688888888888776
Q ss_pred CccCCcc----ccCCcccCEEEeCCcccc
Q 038265 620 LEELPKD----IRYLVSLRMFVVTTKQKS 644 (883)
Q Consensus 620 ~~~lp~~----~~~l~~L~~L~l~~~~~~ 644 (883)
....|.. +..-+.|.||.+++|.+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 6665543 455677777777777655
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.027 Score=59.99 Aligned_cols=94 Identities=12% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCC
Q 038265 254 GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEG 332 (883)
Q Consensus 254 ~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~ 332 (883)
+++=++|+|+++......+..+...+-...+++.+|++|.+++ +..... ..+..+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~--SRcq~i~~~~~~~~~~~~~L~~~~---- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTIL--SRCRQFPMTVPAPEAAAAWLAAQG---- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHH--hcCEEEEecCCCHHHHHHHHHHcC----
Confidence 4455888999988888888888888877777887777776643 332221 123689999999999998887642
Q ss_pred CCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 333 KEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 333 ~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
. .+ ...++..++|.|.....+
T Consensus 205 ~--~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 V--AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--Ch-----HHHHHHHcCCCHHHHHHH
Confidence 1 11 123577889999644433
No 219
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.75 E-value=0.0037 Score=66.81 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=49.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC----------------CCCcHHHHHHHHHHHhhCCCCCCCChH------HHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ----------------KDFGKRQIMTKIINSVIGGNHGNLDPD------RMQKVL 248 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~l 248 (883)
...++|+|++|+|||||++.+++.. ..+++.+++..+...+........... ...+..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 4689999999999999999998863 336778888887655533322221111 111122
Q ss_pred HHH-cCCCceEEEEeCCC
Q 038265 249 RDS-LNGKRYLLVMDDVW 265 (883)
Q Consensus 249 ~~~-l~~kr~LlvlDdv~ 265 (883)
+.. -.+++++|++|.+.
T Consensus 248 e~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHcCCCeEEEEEChh
Confidence 222 35799999999984
No 220
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.011 Score=62.77 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=77.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC---------CCCcHHHHHHHHHHHhhCC-------C----C----CCCChHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ---------KDFGKRQIMTKIINSVIGG-------N----H----GNLDPDRM 244 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~---------~~~~~~~~~~~i~~~~~~~-------~----~----~~~~~~~~ 244 (883)
.-.+.+.++|+.|+||||+|+.+.... ..++.-.....+.....++ . . .....+++
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 445678999999999999998886543 1222212222221111100 0 0 11234443
Q ss_pred HHHHHHHcC-----CCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCceecCCCChh
Q 038265 245 QKVLRDSLN-----GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTGYNLQELPYK 318 (883)
Q Consensus 245 ~~~l~~~l~-----~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~~~l~~L~~~ 318 (883)
.+. .+.+. +++=++|+|++...+...-..+...+.....++.+|++|.+.. +..... ..+..+.+.+++.+
T Consensus 99 R~l-~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~--SRc~~~~~~~~~~~ 175 (325)
T PRK08699 99 REI-IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK--SRCRKMVLPAPSHE 175 (325)
T ss_pred HHH-HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH--HHhhhhcCCCCCHH
Confidence 332 23322 3344556688877776666666666655445677888887754 222211 22378899999999
Q ss_pred cHHHHHHHH
Q 038265 319 DCLSLFMKC 327 (883)
Q Consensus 319 ~a~~lf~~~ 327 (883)
++.+.+...
T Consensus 176 ~~~~~L~~~ 184 (325)
T PRK08699 176 EALAYLRER 184 (325)
T ss_pred HHHHHHHhc
Confidence 998888653
No 221
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.01 Score=66.04 Aligned_cols=182 Identities=15% Similarity=0.213 Sum_probs=108.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------CCCcHHHHHHHHHHHhhC-
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------KDFGKRQIMTKIINSVIG- 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~~~~~~i~~~~~~- 233 (883)
-+++||-+.-...|.+.+... .-.+-....|+-|+||||+|+-+.... .+++.-...++|-..-..
T Consensus 15 F~evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence 356899999999999988653 234556778999999999998886544 233333333333222000
Q ss_pred ----CCCCCCChHHHHHHHHHHc----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHccc
Q 038265 234 ----GNHGNLDPDRMQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTM 304 (883)
Q Consensus 234 ----~~~~~~~~~~~~~~l~~~l----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 304 (883)
+.......++..+.+.+.. .+|.=+.|+|.|+-.....|..+...+-.....-..|+.|.+.+ +.... .
T Consensus 90 viEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI--l 167 (515)
T COG2812 90 VIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI--L 167 (515)
T ss_pred chhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh--h
Confidence 0001112222222222211 34555889999977677777777776666556667677666643 21111 1
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
..++.|.++.++.++-...+...+-..+.... .+....|++..+|..
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 22478999999999988888888754443322 233455666666643
No 222
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.73 E-value=0.0065 Score=69.53 Aligned_cols=44 Identities=34% Similarity=0.428 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
++++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998876442 234568899999999999999975
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.71 E-value=0.0046 Score=62.60 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=54.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCC-------CcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKD-------FGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
...+.++|.+|+|||+||.++.+.... .+..+++..+-.... ....+.+ .+.+.+. +.=+|||||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~---~~~~~~~----~~l~~l~-~~dlLvIDD 170 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFS---NSETSEE----QLLNDLS-NVDLLVIDE 170 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHh---hccccHH----HHHHHhc-cCCEEEEeC
Confidence 357899999999999999999876511 134444444333221 0111121 2333344 345888999
Q ss_pred CCCCChhhHHH--HHHhcCCC-CCCCEEEEeecC
Q 038265 264 VWNEDPRAWGE--LKSLLLGG-AEGSKILVTTRS 294 (883)
Q Consensus 264 v~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 294 (883)
+......+|+. +...+... ...-.+||||..
T Consensus 171 ig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 171 IGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 97766566664 22222211 123457777764
No 224
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.70 E-value=0.00097 Score=65.54 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=46.5
Q ss_pred CCceeEEeeccCCcc-chhhhhHHhhccCCcccEEEecCcccc----ccc-------cccCCCCCceEecccCCcccccc
Q 038265 532 LGRVRTIMLPIDDER-TSQSFVTSCISKSKSLRVLVLMNSAIE----VLP-------RKMGNLRQLRHLDLSGNRKIKKL 599 (883)
Q Consensus 532 ~~~l~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~----~lp-------~~~~~l~~L~~L~l~~~~~~~~l 599 (883)
+..+..+.++.+..+ .....+..++.+-++|++.+++.-... .+| +.+-+|++|+..+||.|-+-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 444455555432222 223344555666666777666643321 222 23456777777777777654444
Q ss_pred Ccc----ccCCCcccEeecCCC
Q 038265 600 PNS----ICELQSLQTLNLGDC 617 (883)
Q Consensus 600 p~~----~~~l~~L~~L~L~~~ 617 (883)
|+. +++-+.|++|.+++|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC
Confidence 432 445667777777665
No 225
>PRK12377 putative replication protein; Provisional
Probab=96.65 E-value=0.0021 Score=65.27 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=51.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--C-----CcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--D-----FGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
...+.++|.+|+|||+||.++.+... . .+...++..+-..... ..... .+.+.+ .+-=||||||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~----~~~~~----~~l~~l-~~~dLLiIDD 171 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN----GQSGE----KFLQEL-CKVDLLVLDE 171 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc----cchHH----HHHHHh-cCCCEEEEcC
Confidence 35789999999999999999987651 1 1233344433332211 11111 222222 3556999999
Q ss_pred CCCCChhhHHH--HHHhcCCC-CCCCEEEEeecC
Q 038265 264 VWNEDPRAWGE--LKSLLLGG-AEGSKILVTTRS 294 (883)
Q Consensus 264 v~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 294 (883)
+.......|.. +...+... ...-.+||||-.
T Consensus 172 lg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 172 IGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 96554445543 22222221 123347888764
No 226
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.64 E-value=0.026 Score=56.12 Aligned_cols=171 Identities=13% Similarity=0.121 Sum_probs=97.0
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-----------------------------
Q 038265 166 IIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK----------------------------- 216 (883)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----------------------------- 216 (883)
+.++++....+...... .+..-..++|+.|.||-|.+..+.++.-
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 66777766666665532 4467788999999999999977766541
Q ss_pred -----------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCce-EEEEeCCCCCChhhHHHHHHhcCCCCC
Q 038265 217 -----------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRY-LLVMDDVWNEDPRAWGELKSLLLGGAE 284 (883)
Q Consensus 217 -----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlvlDdv~~~~~~~~~~l~~~l~~~~~ 284 (883)
.+..+.+..+++.+......- +.-..+.| ++|+-.+++-..++=..+.+..-.-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 111222333333332211000 01112344 566666654433232334444433345
Q ss_pred CCEEEEeecChH-HHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc-hHHHH
Q 038265 285 GSKILVTTRSNK-VALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP-LAVRT 359 (883)
Q Consensus 285 gs~iivTtr~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~ 359 (883)
.+|+|+...... +-..... .+-.+++...+++|....++..+-+.+...+ .+++.+|+++++|.- .||-+
T Consensus 157 ~~RlIl~cns~SriIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred CceEEEEecCcccchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHH
Confidence 678877443311 1111111 1246889999999999999998866554433 577899999998864 34433
No 227
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.62 E-value=0.013 Score=64.31 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=70.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCC--CCCChHHHHHHHHHHcCCCceEEEEeCCCCCChh
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNH--GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPR 270 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~ 270 (883)
++.|.|+-++||||+++.+......- ++- ..-.+. ......+....+.+.-..++..|+||.|.. ..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~--------~iy-~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~--v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE--------IIY-INFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQN--VP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc--------eEE-EEecchhcchhhHHHHHHHHHHhhccCCceEEEecccC--ch
Confidence 99999999999999997665543110 000 000000 000111111222222222788999999954 45
Q ss_pred hHHHHHHhcCCCCCCCEEEEeecChHHHHHH--ccc-CCCCceecCCCChhcHHHH
Q 038265 271 AWGELKSLLLGGAEGSKILVTTRSNKVALIM--GTM-RGTTGYNLQELPYKDCLSL 323 (883)
Q Consensus 271 ~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--~~~-~~~~~~~l~~L~~~~a~~l 323 (883)
+|+.....+.+.++. +|++|+-+....... ... .....+++-||+..|-..+
T Consensus 108 ~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 108 DWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred hHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 899988888887766 889888875443211 111 1125788999998887654
No 228
>PRK07261 topology modulation protein; Provisional
Probab=96.59 E-value=0.0021 Score=61.82 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=40.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccCC--CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQK--DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVW 265 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~ 265 (883)
.|.|+|++|+||||||+.+..... ......+. ........+.++....+.+.+.+.+ .|+|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH-------FQPNWQERDDDDMIADISNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE-------eccccccCCHHHHHHHHHHHHhCCC--EEEcCcc
Confidence 489999999999999999876531 11110000 1112233455667777777887776 6788873
No 229
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.57 E-value=0.0015 Score=58.82 Aligned_cols=23 Identities=43% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998863
No 230
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.56 E-value=0.0083 Score=63.23 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=65.3
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--C-----CcHHHHHHHHHHHhhCCCCCCCC
Q 038265 168 GRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--D-----FGKRQIMTKIINSVIGGNHGNLD 240 (883)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~-----~~~~~~~~~i~~~~~~~~~~~~~ 240 (883)
++........+++..-.. ....+-+.++|..|+|||.||.++++... . +....++.++...... .+
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~-----~~ 207 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISD-----GS 207 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhc-----Cc
Confidence 444444545555543211 12346799999999999999999988751 1 1234455554443311 11
Q ss_pred hHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHH--HHHhc-CCC-CCCCEEEEeecC
Q 038265 241 PDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGE--LKSLL-LGG-AEGSKILVTTRS 294 (883)
Q Consensus 241 ~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 294 (883)
.. +.+. .+ .+-=||||||+..+...+|.. +...+ ... ..+-.+|+||-.
T Consensus 208 ~~---~~l~-~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 208 VK---EKID-AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HH---HHHH-Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 2222 22 245589999997776677753 43333 222 235568888864
No 231
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.55 E-value=0.0083 Score=70.96 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=67.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----CCcHHHHHH-HHHHHhhCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQK----DFGKRQIMT-KIINSVIGGN 235 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~~~~~~-~i~~~~~~~~ 235 (883)
..++|-++.++.|.+.+..... ........+.++|++|+|||++|+.+..... .++...... .....+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 3578999999998888763210 1112345789999999999999998877551 122222211 1123333322
Q ss_pred CCCCChHHHHHHHHHHcCC-CceEEEEeCCCCCChhhHHHHHHhcCC
Q 038265 236 HGNLDPDRMQKVLRDSLNG-KRYLLVMDDVWNEDPRAWGELKSLLLG 281 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~~~~~~~~l~~~l~~ 281 (883)
......+ ....+.+.++. ..-+++||+++..+...+..+...+..
T Consensus 538 ~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 538 PGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred CCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 1111100 11123333333 446999999988777667767666543
No 232
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.52 E-value=0.0068 Score=73.52 Aligned_cols=131 Identities=18% Similarity=0.291 Sum_probs=74.3
Q ss_pred CCccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHH-HHHHHh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMT-KIINSV 231 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~-~i~~~~ 231 (883)
...++|-++.++.+...+..... ........+.++|+.|+|||+||+.+.+.. -.++...+.. .-...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l 587 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKL 587 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHh
Confidence 35689999999999888753211 111224567789999999999998886643 1112222111 011112
Q ss_pred hCCCCCCCChHHHHHHHHHHcCCCc-eEEEEeCCCCCChhhHHHHHHhcCCC-----------CCCCEEEEeecC
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNGKR-YLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTTRS 294 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~kr-~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 294 (883)
.+........++ ...+.+.++.++ -+++||+++..+...+..+...+..+ -..+-||+||..
T Consensus 588 ~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 588 IGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred cCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 222111111111 112344444444 58999999888877777777766543 135556777764
No 233
>PRK04296 thymidine kinase; Provisional
Probab=96.49 E-value=0.0053 Score=60.14 Aligned_cols=102 Identities=12% Similarity=0.046 Sum_probs=55.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC-----------CCCcHHHHHHHHHHHhhCCCC--CCCChHHHHHHHHHHcCCCceE
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ-----------KDFGKRQIMTKIINSVIGGNH--GNLDPDRMQKVLRDSLNGKRYL 258 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~-----------~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~l~~kr~L 258 (883)
.++.|+|..|.||||+|..+..+. ..++.+.....+..++.-... ......++...+.+ ..++.-+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dv 81 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDC 81 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCE
Confidence 478899999999999997775543 122323222233333311000 01233444444544 3334459
Q ss_pred EEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH
Q 038265 259 LVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 259 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
||+|.+.-.+..+..++...+ ...|..||+|.++.+
T Consensus 82 viIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred EEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 999999543322223333332 235788999998754
No 234
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.03 Score=56.24 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=38.3
Q ss_pred CCCChHHHHHH-HHHHcCCCceEEEEeCCC----CCChhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 237 GNLDPDRMQKV-LRDSLNGKRYLLVMDDVW----NEDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 237 ~~~~~~~~~~~-l~~~l~~kr~LlvlDdv~----~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
...+..+.++. +.+.|.++.=|++||.-- .........+...+... |..||++|.+-....
T Consensus 138 ~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~ 203 (254)
T COG1121 138 GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVM 203 (254)
T ss_pred cccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhH
Confidence 44555565554 556788999999999642 22233333344444443 889999999866543
No 235
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.48 E-value=0.002 Score=71.56 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=43.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDF 218 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 218 (883)
.+++|.++.+++|++.|.....+-+.+-+++.++|++|+||||||+.+.+-.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3699999999999999844322223456799999999999999999997755444
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.012 Score=63.43 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=73.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCCh----HHHHHHHHHHcCCCceEEEEeCC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDP----DRMQKVLRDSLNGKRYLLVMDDV 264 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~l~~~l~~kr~LlvlDdv 264 (883)
.+...|.+.|++|+|||+||..+..... |.-..+. .++.....++ ..+.....+.-+..=-.||+||+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~-FPFvKii-------Spe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdi 607 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSD-FPFVKII-------SPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDI 607 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcC-CCeEEEe-------ChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcch
Confidence 5577888999999999999998877642 1110000 0011111122 23334445555667789999999
Q ss_pred CCCChhhHHHH------------HHhcCC-CCCCCE--EEEeecChHHHHHHcccCC-CCceecCCCCh-hcHHHHHHHH
Q 038265 265 WNEDPRAWGEL------------KSLLLG-GAEGSK--ILVTTRSNKVALIMGTMRG-TTGYNLQELPY-KDCLSLFMKC 327 (883)
Q Consensus 265 ~~~~~~~~~~l------------~~~l~~-~~~gs~--iivTtr~~~v~~~~~~~~~-~~~~~l~~L~~-~~a~~lf~~~ 327 (883)
. ...+|-.+ .-.+.. ..+|-| |+-||....+...++.... ...|.++.++. ++..+.++..
T Consensus 608 E--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 608 E--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred h--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 3 33333322 222222 123444 4557777788877765422 24688888876 6677766654
No 237
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.47 E-value=0.0081 Score=57.23 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=34.2
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 166 IIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+||....+.++.+.+.... ....-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888999888876533 112456799999999999999999865
No 238
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.46 E-value=0.061 Score=60.60 Aligned_cols=162 Identities=18% Similarity=0.164 Sum_probs=93.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---------CCC-----------cHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---------KDF-----------GKRQ 222 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---------~~~-----------~~~~ 222 (883)
+..+-+|+.+..+|...+...-.. ......+-|.|.+|+|||..+..|.+.. ..| .+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 345679999999998888654322 2334589999999999999999998743 222 3678
Q ss_pred HHHHHHHHhhCCCCCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCC-CCCCCEEEEeecC--
Q 038265 223 IMTKIINSVIGGNHGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLG-GAEGSKILVTTRS-- 294 (883)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~-- 294 (883)
++..|...+.+.... .....+.+..+. +.+.+++++|+++..-...=+.+-..|.+ ..++||++|.+=-
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 888888888665432 223333344333 34678999998743211111122233333 4568887665421
Q ss_pred hHHH-HHH----cccCCCCceecCCCChhcHHHHHHHHH
Q 038265 295 NKVA-LIM----GTMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 295 ~~v~-~~~----~~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
.+.- ..+ ...-+-..+..++-++.+-.++...+.
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 0110 111 111112455666666666666555544
No 239
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.43 E-value=0.053 Score=51.03 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=36.0
Q ss_pred HHHHHcCCCceEEEEeCCCC--CChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHc
Q 038265 247 VLRDSLNGKRYLLVMDDVWN--EDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMG 302 (883)
Q Consensus 247 ~l~~~l~~kr~LlvlDdv~~--~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 302 (883)
.|.+.+-+++-+++=|.--. +...+|+-+.-+-.-+..|..||++|.+.++...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 35556667788888885311 123456554433334557999999999998876653
No 240
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.43 E-value=0.018 Score=67.60 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=85.5
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CC---cHHHHHHHHHHHhhC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD------GESETVSVIPIVGIGGLGKTALAKLVYNDQK-DF---GKRQIMTKIINSVIG 233 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~---~~~~~~~~i~~~~~~ 233 (883)
.++.|.+...+++.+.+..... ....-.+-|.++|++|+|||++|+.+.+... +| +...+.. ...
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~----~~~- 226 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE----MFV- 226 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH----hhh-
Confidence 4577877776666554422100 0011123499999999999999999988652 11 1222211 111
Q ss_pred CCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC----------hhhHHHHHHh----cCC--CCCCCEEEEeecChHH
Q 038265 234 GNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGELKSL----LLG--GAEGSKILVTTRSNKV 297 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~~~~~l~~~----l~~--~~~gs~iivTtr~~~v 297 (883)
......+...+.......+.+|++|+++... ...+...... +.. ...+.-||.||..++.
T Consensus 227 ----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 227 ----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred ----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 1122333444444445578899999986521 1122222221 222 1234455557776654
Q ss_pred HHHHcc--cCCCCceecCCCChhcHHHHHHHHHhc
Q 038265 298 ALIMGT--MRGTTGYNLQELPYKDCLSLFMKCAFK 330 (883)
Q Consensus 298 ~~~~~~--~~~~~~~~l~~L~~~~a~~lf~~~a~~ 330 (883)
....-. ....+.+.+...+.++-.+++..+...
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 432211 122367888888888888888877643
No 241
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.076 Score=61.38 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=103.6
Q ss_pred cCCccccchhhHHHHHH---HHhcCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCC----cHHHHHHHHHHHh
Q 038265 162 RTSDIIGRYEDGEKIIE---LLMQTS---DGESETVSVIPIVGIGGLGKTALAKLVYNDQKDF----GKRQIMTKIINSV 231 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~---~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~~~~~~~i~~~~ 231 (883)
.-.++.|-++..++|.+ .|..+. +-+..-++=|.++|++|.|||-||++++-..... +..++.. .+
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE----~~ 384 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE----MF 384 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH----Hh
Confidence 34578898876666555 443321 1122446778999999999999999998887321 2222322 22
Q ss_pred hCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC------------h---hhHHHHHHhcCCCCCCC--EEEEeecC
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED------------P---RAWGELKSLLLGGAEGS--KILVTTRS 294 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~------------~---~~~~~l~~~l~~~~~gs--~iivTtr~ 294 (883)
.+. ......+.....-...+..|.+|+++... . ....++..-+.+...++ -++-+|..
T Consensus 385 ~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr 459 (774)
T KOG0731|consen 385 VGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNR 459 (774)
T ss_pred ccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCC
Confidence 111 11222223333334577899999875421 1 11223333333333333 23345555
Q ss_pred hHHHHHH--cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchH
Q 038265 295 NKVALIM--GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLA 356 (883)
Q Consensus 295 ~~v~~~~--~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (883)
.++.... ....-++.+.++.-+.....++|..++..-... .+..++++ |+...-|.+=|
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 5554432 222234788999999999999999988443322 34445556 88888777744
No 242
>PRK06921 hypothetical protein; Provisional
Probab=96.41 E-value=0.01 Score=61.28 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...+.++|.+|+|||+||.++.+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999998764
No 243
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.40 E-value=0.0058 Score=59.64 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=25.7
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 168 GRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+..+.....+.|.. ..+|.+.|++|.|||.||.+..-
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al 41 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAAL 41 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHH
Confidence 455666777777763 45999999999999999966643
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.36 E-value=0.0013 Score=63.35 Aligned_cols=94 Identities=18% Similarity=0.256 Sum_probs=47.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
..-+.++|.+|+|||.||.++.+.. .-....+++..+-. .. ....... . .+.+. +-=||||||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~----~~-~~~~~~~---~-~~~l~-~~dlLilDD 116 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ----SR-SDGSYEE---L-LKRLK-RVDLLILDD 116 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC----CH-CCTTHCH---H-HHHHH-TSSCEEEET
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc----cc-cccchhh---h-cCccc-cccEecccc
Confidence 3569999999999999998887654 11234444444322 11 1112222 2 22333 234778999
Q ss_pred CCCCChhhHHH--HHHhcCCC-CCCCEEEEeecCh
Q 038265 264 VWNEDPRAWGE--LKSLLLGG-AEGSKILVTTRSN 295 (883)
Q Consensus 264 v~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~~ 295 (883)
+-.....+|.. +...+... ..+ .+||||...
T Consensus 117 lG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 117 LGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp CTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 97655445532 11111111 123 588888753
No 245
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.34 E-value=0.009 Score=59.72 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-.++|+|..|+|||||+..+....
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh
Confidence 367899999999999998886544
No 246
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.30 E-value=0.011 Score=57.56 Aligned_cols=121 Identities=25% Similarity=0.359 Sum_probs=71.0
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCC
Q 038265 161 VRTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLD 240 (883)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 240 (883)
++-..++|.+...+.+++-...-. .+....-|.+||.-|+||++|++++.+....-..+ +.. ....+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr---------LVE--V~k~d 123 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR---------LVE--VDKED 123 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe---------EEE--EcHHH
Confidence 344578999988888876432211 11334568999999999999999997765221111 100 00111
Q ss_pred hHHHHHHHHHHc--CCCceEEEEeCCCC-CChhhHHHHHHhcCCC---CCCCEEEEeecCh
Q 038265 241 PDRMQKVLRDSL--NGKRYLLVMDDVWN-EDPRAWGELKSLLLGG---AEGSKILVTTRSN 295 (883)
Q Consensus 241 ~~~~~~~l~~~l--~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtr~~ 295 (883)
...+. .+.+.| ...||.|..||..- .+...+..++..+.++ .|.-.++..|.++
T Consensus 124 l~~Lp-~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 124 LATLP-DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred HhhHH-HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 12222 223333 46899999999843 3455677788877653 2333455555554
No 247
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.29 E-value=0.12 Score=55.74 Aligned_cols=196 Identities=16% Similarity=0.179 Sum_probs=111.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHH-HHHHccC----------------------------CCCc
Q 038265 169 RYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALA-KLVYNDQ----------------------------KDFG 219 (883)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~----------------------------~~~~ 219 (883)
|.+..++|..||.+.. -.+|.|.|+-|+||+.|+ .++.++. .-|.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 6678899999998743 359999999999999999 6665543 1111
Q ss_pred HHHHHHH-------HHHHhhCCCCC--CCChHHHHHH-------HHH-------------------Hc---CCCceEEEE
Q 038265 220 KRQIMTK-------IINSVIGGNHG--NLDPDRMQKV-------LRD-------------------SL---NGKRYLLVM 261 (883)
Q Consensus 220 ~~~~~~~-------i~~~~~~~~~~--~~~~~~~~~~-------l~~-------------------~l---~~kr~Llvl 261 (883)
...++.. ..+.+.|...+ .....++.++ +++ +| ..+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 1122211 12222332221 1111222221 111 01 123568999
Q ss_pred eCCCCCC---hhhHHHHHHhc--CCCCCCCEEEEeecChHHHHHHc---ccCCCCceecCCCChhcHHHHHHHHHhcCCC
Q 038265 262 DDVWNED---PRAWGELKSLL--LGGAEGSKILVTTRSNKVALIMG---TMRGTTGYNLQELPYKDCLSLFMKCAFKEGK 333 (883)
Q Consensus 262 Ddv~~~~---~~~~~~l~~~l--~~~~~gs~iivTtr~~~v~~~~~---~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~ 333 (883)
|+.-... ..-|+.+...- ....+=.+||++|-+........ .....+.+.+.-.+.+-|.++...+......
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~ 234 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTE 234 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccc
Confidence 9985432 11222222210 11234568999888755544332 1233467889999999999999988744311
Q ss_pred C------------CC-----cchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCH
Q 038265 334 E------------KH-----PNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDE 370 (883)
Q Consensus 334 ~------------~~-----~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~ 370 (883)
. .. .....-....++..||==.-+..+++.++...++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 235 DSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 0 00 1233344667788888888888888888765443
No 248
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.1 Score=56.79 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCccccchh---hHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCc--HHHHHHHHHHHhhC
Q 038265 163 TSDIIGRYE---DGEKIIELLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFG--KRQIMTKIINSVIG 233 (883)
Q Consensus 163 ~~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~--~~~~~~~i~~~~~~ 233 (883)
..++-|-|+ ++++|++.|.++.. -++.=++=|.++|++|.|||-||+++.-... +|- ...-+.+++-.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG--- 379 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG--- 379 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc---
Confidence 456678765 45667777765421 1223357789999999999999999987762 111 01111122111
Q ss_pred CCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC--hhhH---------HHHHHhcCCCCC--CCEEEEeecChHHHHH
Q 038265 234 GNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED--PRAW---------GELKSLLLGGAE--GSKILVTTRSNKVALI 300 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--~~~~---------~~l~~~l~~~~~--gs~iivTtr~~~v~~~ 300 (883)
.....+.+.+...-++-++.|++|.++... ...| .++..-+.+..+ |--||-.|..++....
T Consensus 380 -----vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 380 -----VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred -----ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 112222333333445678999999986531 1112 233334444433 4333334555555544
Q ss_pred HcccCCC--CceecCCCChhcHHHHHHHHH
Q 038265 301 MGTMRGT--TGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 301 ~~~~~~~--~~~~l~~L~~~~a~~lf~~~a 328 (883)
.-+.++. ..+.|...+..--.++|..+.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 3333332 344454444444455555554
No 249
>PRK06696 uridine kinase; Validated
Probab=96.26 E-value=0.0055 Score=61.91 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=34.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 168 GRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.|++-+++|.+.+.... ..+..+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35666777888776522 256789999999999999999988654
No 250
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.23 E-value=0.02 Score=61.94 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..++|+|+.|+||||||+.+.--
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcc
Confidence 48999999999999999998543
No 251
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.051 Score=60.81 Aligned_cols=173 Identities=17% Similarity=0.114 Sum_probs=90.5
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCcHHHHHHHHHHHhhCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~~~~i~~~~~~~~ 235 (883)
+++=|.++-..++.+.+.-+.. -+-...+-|..+|+||.|||++|+++.+..+ .|-. ---.+++..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls-vkgpEL~sk----- 507 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS-VKGPELFSK----- 507 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee-ccCHHHHHH-----
Confidence 4555666666655544332210 1225577899999999999999999988762 1100 000111111
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-----------hhhHHHHHHhcCCCCCCCEEEE--eecChHHHHHH-
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLLGGAEGSKILV--TTRSNKVALIM- 301 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~~~- 301 (883)
+...++..+.+.+++.-+--..+|.||.++... ..-..++..-+.+......|+| .|..++.....
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~AL 587 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPAL 587 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHH
Confidence 122233344444444445567899999885421 1112233344444333333333 33333332221
Q ss_pred -cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHH
Q 038265 302 -GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKI 342 (883)
Q Consensus 302 -~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~ 342 (883)
....-++.+-++.-+.+.-.++|..++.+-.....-++.++
T Consensus 588 lRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~L 629 (693)
T KOG0730|consen 588 LRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEEL 629 (693)
T ss_pred cCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHH
Confidence 11122356778888888888999999855443333244443
No 252
>PRK04132 replication factor C small subunit; Provisional
Probab=96.19 E-value=0.084 Score=62.79 Aligned_cols=148 Identities=9% Similarity=0.021 Sum_probs=88.7
Q ss_pred CCCCcHHHHHHHHHccC--CCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHc-----C-CCceEEEEeCCCCCChh
Q 038265 199 IGGLGKTALAKLVYNDQ--KDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSL-----N-GKRYLLVMDDVWNEDPR 270 (883)
Q Consensus 199 ~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlvlDdv~~~~~~ 270 (883)
|.++||||+|.+++++. +.++.. .-.+... .....+.+.+.+.+.. . .+.-++|+|+++..+..
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~------~lElNAS--d~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~ 645 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHN------FLELNAS--DERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD 645 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCe------EEEEeCC--CcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHH
Confidence 77899999999998763 000000 0000000 0011222222332221 1 24579999999888777
Q ss_pred hHHHHHHhcCCCCCCCEEEEeecChHH-HHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHH
Q 038265 271 AWGELKSLLLGGAEGSKILVTTRSNKV-ALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEK 349 (883)
Q Consensus 271 ~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~ 349 (883)
+...+...+-.....+++|++|.+..- .... ...+..+.+.+++.++-.+.+...+...+...+ .+....|++.
T Consensus 646 AQnALLk~lEep~~~~~FILi~N~~~kIi~tI--rSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~e~L~~Ia~~ 720 (846)
T PRK04132 646 AQQALRRTMEMFSSNVRFILSCNYSSKIIEPI--QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYI 720 (846)
T ss_pred HHHHHHHHhhCCCCCeEEEEEeCChhhCchHH--hhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHH
Confidence 777777777665567788877776432 2111 122478999999999988888877643332212 3466889999
Q ss_pred hCCCchHHHH
Q 038265 350 CRGIPLAVRT 359 (883)
Q Consensus 350 c~glPLai~~ 359 (883)
++|.+.....
T Consensus 721 s~GDlR~AIn 730 (846)
T PRK04132 721 AEGDMRRAIN 730 (846)
T ss_pred cCCCHHHHHH
Confidence 9998854433
No 253
>PHA02244 ATPase-like protein
Probab=96.18 E-value=0.018 Score=60.94 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=49.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccCC-CCc-HHHHHHHHHHHhhCC--CCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQK-DFG-KRQIMTKIINSVIGG--NHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED 268 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~~-~~~-~~~~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~ 268 (883)
-|.|+|++|+|||+||++++.... +|- ...+... . .+.+. ....+.... +...+ .+--+++||++....
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~-~-~L~G~i~~~g~~~dgp----Ll~A~-~~GgvLiLDEId~a~ 193 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDE-F-ELKGFIDANGKFHETP----FYEAF-KKGGLFFIDEIDASI 193 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHH-H-hhcccccccccccchH----HHHHh-hcCCEEEEeCcCcCC
Confidence 467899999999999999987642 111 1111110 0 01110 001111111 11112 345699999997655
Q ss_pred hhhHHHHHHhcCC-----------CCCCCEEEEeecC
Q 038265 269 PRAWGELKSLLLG-----------GAEGSKILVTTRS 294 (883)
Q Consensus 269 ~~~~~~l~~~l~~-----------~~~gs~iivTtr~ 294 (883)
......+...+.. .+++.++|+|+..
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 4444444444421 1357788888864
No 254
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0017 Score=64.03 Aligned_cols=82 Identities=18% Similarity=0.106 Sum_probs=40.3
Q ss_pred CCcccEeecCCC--CCCccCCccccCCcccCEEEeCCccccccc--cccCCCCCCCeEEeecCCCcccc---ccccccCc
Q 038265 606 LQSLQTLNLGDC--LELEELPKDIRYLVSLRMFVVTTKQKSLLE--SGIGCLSSLRFLMISDCGNLEYL---FEDIDQLS 678 (883)
Q Consensus 606 l~~L~~L~L~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~ 678 (883)
|++|+.|.++.| .....++.....+++|++|+++.|.+..+. ..+..+.+|..|++.+|.....- -..+.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 445555555554 333444444444455555555555554211 12345566777777776543310 01233456
Q ss_pred ccceeeecc
Q 038265 679 VLRSLVINS 687 (883)
Q Consensus 679 ~L~~L~l~~ 687 (883)
+|+.|+-..
T Consensus 144 ~L~~LD~~d 152 (260)
T KOG2739|consen 144 SLKYLDGCD 152 (260)
T ss_pred hhccccccc
Confidence 676665433
No 255
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.17 E-value=0.0078 Score=56.00 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998654
No 256
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.16 E-value=0.048 Score=52.99 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=61.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--------------CCcHHHHHHH------HHHHhh-----CCCCCCCChHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--------------DFGKRQIMTK------IINSVI-----GGNHGNLDPDRMQ 245 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--------------~~~~~~~~~~------i~~~~~-----~~~~~~~~~~~~~ 245 (883)
-.+++|.|..|.|||||++.+..... .++....... ++..+. .......+..+.+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 45999999999999999999976541 1112111111 222221 1112223333333
Q ss_pred H-HHHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCC-CC-CCEEEEeecChHHHH
Q 038265 246 K-VLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG-AE-GSKILVTTRSNKVAL 299 (883)
Q Consensus 246 ~-~l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 299 (883)
. .+...+...+-++++|+.-. .|....+.+...+... .. |..||++|.+.....
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2 34556677888999998743 2333444444444322 12 678899998876543
No 257
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.13 E-value=0.033 Score=59.63 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=35.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 166 IIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+||+...+.++.+.+.... ..-.-|.|+|..|+||+++|+.++...
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888888776533 223468999999999999999998654
No 258
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.13 E-value=0.0011 Score=61.43 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 038265 194 IPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~~ 215 (883)
|.++|++|+|||+||+.++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999987654
No 259
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.22 Score=48.96 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=91.4
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (883)
+++-|-+..++++++.+.-+.+ -+-..++-|..+|++|.|||-+|++...+...--..-.-.++.+..++
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIG--- 247 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIG--- 247 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhc---
Confidence 5677899999999998765432 122445678999999999999999987664211011001112222222
Q ss_pred CCCChHHHHHHHHHHc----CCCceEEEEeCCCCCC--------------hhhHHHHHHhcCCCC--CCCEEEEeecChH
Q 038265 237 GNLDPDRMQKVLRDSL----NGKRYLLVMDDVWNED--------------PRAWGELKSLLLGGA--EGSKILVTTRSNK 296 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l----~~kr~LlvlDdv~~~~--------------~~~~~~l~~~l~~~~--~gs~iivTtr~~~ 296 (883)
+..+.++... ...+..|++|.++-.. +...-++...+.+.. ..-+||..|..-+
T Consensus 248 ------dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 248 ------DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred ------chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 2223334322 3467899999875311 011122333344433 3456777665433
Q ss_pred HHHHH--cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHH
Q 038265 297 VALIM--GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGE 344 (883)
Q Consensus 297 v~~~~--~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~ 344 (883)
+.... ....-.+.++....+++.-.++++-++.+-....+-++.++++
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 33211 1111235677766666655566665554444433445554443
No 260
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.035 Score=56.47 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=43.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC-----CCCc--------HHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCc-
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ-----KDFG--------KRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKR- 256 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~-----~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr- 256 (883)
-++|.++|+||.|||+|+++++++. ..+. -..++...+.+- ..-...+.+.|.+.+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES------gKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES------GKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh------hhHHHHHHHHHHHHHhCCCc
Confidence 4899999999999999999999876 2221 223333333221 1123445556666666555
Q ss_pred -eEEEEeCCC
Q 038265 257 -YLLVMDDVW 265 (883)
Q Consensus 257 -~LlvlDdv~ 265 (883)
+.+.+|.|.
T Consensus 251 lVfvLIDEVE 260 (423)
T KOG0744|consen 251 LVFVLIDEVE 260 (423)
T ss_pred EEEEEeHHHH
Confidence 456688884
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.048 Score=60.23 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC-CC---cHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK-DF---GKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWN 266 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~-~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 266 (883)
..=|.+||++|.|||-||++|.|... .| -.-+++... .| .++..+.+.+.+.-..-.++|++|.++.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY----VG-----ESErAVR~vFqRAR~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY----VG-----ESERAVRQVFQRARASAPCVIFFDEIDA 615 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH----hh-----hHHHHHHHHHHHhhcCCCeEEEecchhh
Confidence 45688999999999999999999862 11 111222211 11 1223334444445556899999999864
Q ss_pred C-----C------hhhHHHHHHhcCCC--CCCCEEEEeecChHHHHHHc--ccCCCCceecCCCChhcHHHHHHHHHhcC
Q 038265 267 E-----D------PRAWGELKSLLLGG--AEGSKILVTTRSNKVALIMG--TMRGTTGYNLQELPYKDCLSLFMKCAFKE 331 (883)
Q Consensus 267 ~-----~------~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~--~~~~~~~~~l~~L~~~~a~~lf~~~a~~~ 331 (883)
. + ..-..++..-+.+. ..|--||-.|..+++....- ...-+...-|+..+.+|-.++++..+...
T Consensus 616 L~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~ 695 (802)
T KOG0733|consen 616 LVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT 695 (802)
T ss_pred cCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccC
Confidence 2 1 11122344344432 34555666666555543221 21223567788888999999999888543
Q ss_pred CCCCC--cchHHHHHHHHHHhCCCc
Q 038265 332 GKEKH--PNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 332 ~~~~~--~~~~~~~~~i~~~c~glP 354 (883)
..+.. -++.+++.. .+|.|.-
T Consensus 696 k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 696 KPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCCCcccCHHHHhhc--ccccCCc
Confidence 33322 245444432 3454543
No 262
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.06 E-value=0.012 Score=62.51 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC--CC-----CcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ--KD-----FGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDV 264 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~--~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv 264 (883)
.-+.++|.+|+|||+||.++.+.. .. ++...++..+....... .. ..... .+.+. +-=||||||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~---~~---~~~~~-~~~l~-~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNN---DK---ELEEV-YDLLI-NCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhcc---ch---hHHHH-HHHhc-cCCEEEEecc
Confidence 569999999999999999997765 11 22334443332211110 00 11111 22222 2248999999
Q ss_pred CCCChhhHHH--HHHhcCCC-CCCCEEEEeecC
Q 038265 265 WNEDPRAWGE--LKSLLLGG-AEGSKILVTTRS 294 (883)
Q Consensus 265 ~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 294 (883)
.......|.. +...+... ..+-.+||||..
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 6654444432 33322221 224568888875
No 263
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.05 E-value=0.02 Score=64.51 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=47.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHH------c--CCCceEEE
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDS------L--NGKRYLLV 260 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~------l--~~kr~Llv 260 (883)
+.-+|..++|++|+||||||..++++.. |.+.++ ...+.-+...+.++|... + .+++.-+|
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG-YsVvEI----------NASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLV 392 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG-YSVVEI----------NASDERTAPMVKEKIENAVQNHSVLDADSRPVCLV 392 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC-ceEEEe----------cccccccHHHHHHHHHHHHhhccccccCCCcceEE
Confidence 5568999999999999999999988751 111000 000111122222233322 2 25777899
Q ss_pred EeCCCCCChhhHHHHHHhc
Q 038265 261 MDDVWNEDPRAWGELKSLL 279 (883)
Q Consensus 261 lDdv~~~~~~~~~~l~~~l 279 (883)
+|.++.......+.+...+
T Consensus 393 iDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 393 IDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred EecccCCcHHHHHHHHHHH
Confidence 9999776654555555544
No 264
>PRK03839 putative kinase; Provisional
Probab=96.00 E-value=0.0095 Score=57.98 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 265
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.98 E-value=0.01 Score=56.25 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=65.3
Q ss_pred CcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCC--ccccCCcccCEEE
Q 038265 560 KSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELP--KDIRYLVSLRMFV 637 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~ 637 (883)
.....+||++|.+..++ .+..++.|.+|.+.+|.+...-|.--..+++|++|.|.+|+. ..+- .-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceee
Confidence 45677899999988774 567888999999998875444444333567899999988643 3322 2345566666666
Q ss_pred eCCccccccc----cccCCCCCCCeEEeec
Q 038265 638 VTTKQKSLLE----SGIGCLSSLRFLMISD 663 (883)
Q Consensus 638 l~~~~~~~~~----~~~~~l~~L~~L~l~~ 663 (883)
+-+|....-. -.+..+++|++||+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666554221 1344556666666544
No 266
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.95 E-value=0.028 Score=55.29 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=49.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--CCc------HHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHc---------C
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--DFG------KRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSL---------N 253 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l---------~ 253 (883)
-+++.|.|.+|+||||+++.+..... .+. .......+.... +. ....+...+...- .
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~-~~-----~a~Ti~~~l~~~~~~~~~~~~~~ 91 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT-GI-----EAQTIHSFLYRIPNGDDEGRPEL 91 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH-TS------EEEHHHHTTEECCEECCSSCC-
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh-Cc-----chhhHHHHHhcCCcccccccccC
Confidence 35888999999999999988754331 010 011111111111 00 0000001100000 2
Q ss_pred CCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh
Q 038265 254 GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 295 (883)
Q Consensus 254 ~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 295 (883)
.++-++|+|++.-.+...+..+...... .|+|+|+.--..
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 3446999999977776677777766655 577888776443
No 267
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.93 E-value=0.049 Score=63.06 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=40.2
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
....++|....+.++.+.+.... ....-|.|+|..|+|||++|+.+++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999998876532 223467899999999999999998764
No 268
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.053 Score=62.18 Aligned_cols=159 Identities=17% Similarity=0.149 Sum_probs=88.8
Q ss_pred CccccchhhHHHHHHHH---hcCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CC-cHHHHHHHHHHHhhCC
Q 038265 164 SDIIGRYEDGEKIIELL---MQTSDG----ESETVSVIPIVGIGGLGKTALAKLVYNDQK-DF-GKRQIMTKIINSVIGG 234 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L---~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~-~~~~~~~~i~~~~~~~ 234 (883)
.++.|.+...+.+.+.+ ..-.+. .-...+.+.++|++|.|||.||+++.+... .| ..... +++...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~--~l~sk~--- 316 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS--ELLSKW--- 316 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH--HHhccc---
Confidence 34556665555554433 221110 124456899999999999999999999542 11 11111 222211
Q ss_pred CCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC------C-----hhhHHHHHHhcCCCCC--CCEEEEeecChHHHHHH
Q 038265 235 NHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE------D-----PRAWGELKSLLLGGAE--GSKILVTTRSNKVALIM 301 (883)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~------~-----~~~~~~l~~~l~~~~~--gs~iivTtr~~~v~~~~ 301 (883)
.......+.+.+....+.....|++|.++.- + .....++...+..... +..||-||-.+......
T Consensus 317 --vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 317 --VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred --cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHh
Confidence 1223334444555555678999999998541 1 0223334444443233 33345555544433321
Q ss_pred ccc--CCCCceecCCCChhcHHHHHHHHHh
Q 038265 302 GTM--RGTTGYNLQELPYKDCLSLFMKCAF 329 (883)
Q Consensus 302 ~~~--~~~~~~~l~~L~~~~a~~lf~~~a~ 329 (883)
-.. .-...+.+.+-+.++..+.|..+..
T Consensus 395 ~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 395 LLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 111 2235788999999999999999884
No 269
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.16 Score=49.74 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (883)
.++-|.+-..+++.+...-+-. -+-+..+-|.++|++|.|||.||++|.++...--++-.-.++.+.-.++..
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence 4566777777777766533211 122446778999999999999999999987433233223333333333322
Q ss_pred CCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh----------hhHHH----HHHhcCC--CCCCCEEEEeecChHHHHH
Q 038265 237 GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP----------RAWGE----LKSLLLG--GAEGSKILVTTRSNKVALI 300 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~----------~~~~~----l~~~l~~--~~~gs~iivTtr~~~v~~~ 300 (883)
. ...+.++-.-.+-.-.|++|.++.... .+... +.....+ ...+-+||..|...+....
T Consensus 235 r-----mvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldp 309 (408)
T KOG0727|consen 235 R-----MVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDP 309 (408)
T ss_pred H-----HHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCH
Confidence 1 122222223345678899998854211 11111 1122222 2345688887764332221
Q ss_pred H--cccCCCCceecCCCChhcHHHHHHHHHhc
Q 038265 301 M--GTMRGTTGYNLQELPYKDCLSLFMKCAFK 330 (883)
Q Consensus 301 ~--~~~~~~~~~~l~~L~~~~a~~lf~~~a~~ 330 (883)
. ....-.+.++...-+..+-.-.|.....+
T Consensus 310 allrpgrldrkiefplpdrrqkrlvf~titsk 341 (408)
T KOG0727|consen 310 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK 341 (408)
T ss_pred hhcCCccccccccCCCCchhhhhhhHHhhhhc
Confidence 1 11111356666655555555566655533
No 270
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.90 E-value=0.018 Score=53.70 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC----------------CCCcHHHHHHHHHHHh----hCCC--CCCCChHH-------
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ----------------KDFGKRQIMTKIINSV----IGGN--HGNLDPDR------- 243 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~----------------~~~~~~~~~~~i~~~~----~~~~--~~~~~~~~------- 243 (883)
+|-|++..|.||||+|....-+. ...+...++..+ ..+ .+.. ....+..+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 67888888999999996654332 122333333332 111 0110 01111111
Q ss_pred HHHHHHHHcCCCc-eEEEEeCCCC---CChhhHHHHHHhcCCCCCCCEEEEeecChH
Q 038265 244 MQKVLRDSLNGKR-YLLVMDDVWN---EDPRAWGELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 244 ~~~~l~~~l~~kr-~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
..+..++.+.... =|+|||++-. ......+.+...+....++..||+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222334444444 4999999732 233455677777777777889999999854
No 271
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.12 Score=50.51 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=85.1
Q ss_pred ccccc-hhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC----CcHHHHHHHHHHHhh
Q 038265 165 DIIGR-YEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKD----FGKRQIMTKIINSVI 232 (883)
Q Consensus 165 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~~~~~~~i~~~~~ 232 (883)
++||. +..+++|.+.+.-+.. -+-.+++-|.++|++|.|||-||++|+++..- .+..++... ..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk----~i 222 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK----YI 222 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH----Hh
Confidence 45654 5556666665533211 12355678999999999999999999998632 222333322 22
Q ss_pred CCCCCCCChHHHHHHHHHHc----CCCceEEEEeCCCCCC--------------hhhHHHHHHhcCC--CCCCCEEEEee
Q 038265 233 GGNHGNLDPDRMQKVLRDSL----NGKRYLLVMDDVWNED--------------PRAWGELKSLLLG--GAEGSKILVTT 292 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l----~~kr~LlvlDdv~~~~--------------~~~~~~l~~~l~~--~~~gs~iivTt 292 (883)
++. ..++++.. ..-+-.|++|.+++.. +...-++...+.+ ..++-+||..|
T Consensus 223 geg---------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimat 293 (404)
T KOG0728|consen 223 GEG---------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMAT 293 (404)
T ss_pred hhh---------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEec
Confidence 221 12222211 2356788888886521 0111123333332 24567888888
Q ss_pred cChHHHHHHc--ccCCCCceecCCCChhcHHHHHHHHH
Q 038265 293 RSNKVALIMG--TMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 293 r~~~v~~~~~--~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
..-++....- ....++.++..+.+++.-.+++.-+.
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 7655554322 22334678888888777777777655
No 272
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0043 Score=61.29 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=36.6
Q ss_pred CCcccEEEecCccccccccccCCCCCceEecccCC--ccccccCccccCCCcccEeecCCCCCC--ccCCccccCCcccC
Q 038265 559 SKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGN--RKIKKLPNSICELQSLQTLNLGDCLEL--EELPKDIRYLVSLR 634 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~L~~~~~~--~~lp~~~~~l~~L~ 634 (883)
+..|+.|++.+..++++ ..+..|++|++|.++.| .....++...-++++|++|++++|.+- ..++ .+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchh
Confidence 34444444444444433 23334555555555555 333334433444455555555554322 1111 223344455
Q ss_pred EEEeCCccc
Q 038265 635 MFVVTTKQK 643 (883)
Q Consensus 635 ~L~l~~~~~ 643 (883)
.|++.+|..
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 555554443
No 273
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.86 E-value=0.024 Score=60.74 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|+...+.++.+.+.... ..-.-|.|+|..|+||+++|+.++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 458999999999998886543 223468899999999999999998654
No 274
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.04 Score=54.17 Aligned_cols=97 Identities=24% Similarity=0.256 Sum_probs=62.7
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTS-------DGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (883)
+++=|-.+.++++.+....+. .-+-+..+-|.++|++|.|||-+|++|.|+....-++-+-.++.+.-.++.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgeg- 255 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG- 255 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhh-
Confidence 456677888888777653221 012244677899999999999999999999876666555555555444331
Q ss_pred CCCChHHHHHHHHHHcCC-CceEEEEeCCCC
Q 038265 237 GNLDPDRMQKVLRDSLNG-KRYLLVMDDVWN 266 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~ 266 (883)
......+.+-.+. |-++|++|.++.
T Consensus 256 -----armvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 256 -----ARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred -----HHHHHHHHHHhcccceEEEEeecccc
Confidence 2333344444444 557888998753
No 275
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.051 Score=58.65 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=73.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCc--------HHHHHHHHHHH------
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFG--------KRQIMTKIINS------ 230 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~~~~~~~i~~~------ 230 (883)
.++|-+....++..+..... ...+.+.++|++|+||||+|.++.+..-... .......+...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46778888888888886432 2344699999999999999998877651110 00011111110
Q ss_pred -hhCCCCCCCC-hHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh
Q 038265 231 -VIGGNHGNLD-PDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 295 (883)
Q Consensus 231 -~~~~~~~~~~-~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 295 (883)
+........+ ..+.+..+.+.. .++.-++++|+++......-..+...+-.....+.+|++|.+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 0111111111 112222222222 2467799999997766555555666666666778888888743
No 276
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.84 E-value=0.035 Score=52.89 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=58.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCCc---------HHHH-HHHHHHHhhCCCCCCCChHHHHH-HHHHHcCCCceEE
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDFG---------KRQI-MTKIINSVIGGNHGNLDPDRMQK-VLRDSLNGKRYLL 259 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~l~~~l~~kr~Ll 259 (883)
-.+++|.|..|.|||||.+.+.....+.. .... .....+...+.. ...+..+.+. .+...+-.++=++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~-~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV-YQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEE-EecCHHHHHHHHHHHHHhcCCCEE
Confidence 35999999999999999999976542111 0000 001111111000 0133333332 3445566777888
Q ss_pred EEeCCCC-CChhhHHHHHHhcCCC-CCCCEEEEeecChHHHH
Q 038265 260 VMDDVWN-EDPRAWGELKSLLLGG-AEGSKILVTTRSNKVAL 299 (883)
Q Consensus 260 vlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 299 (883)
++|+.-. .|....+.+...+... ..|..||++|.+.....
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 9998743 2333444444444321 23667889998876443
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.0063 Score=55.39 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.--|+|.||+|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999997654
No 278
>PRK00625 shikimate kinase; Provisional
Probab=95.83 E-value=0.048 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.|.++||+|+||||+++.+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 279
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.13 Score=51.81 Aligned_cols=93 Identities=24% Similarity=0.342 Sum_probs=58.2
Q ss_pred CccccchhhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--CCcH--HHHHHHHHHHhhC
Q 038265 164 SDIIGRYEDGEKIIELLMQTS------DGESETVSVIPIVGIGGLGKTALAKLVYNDQK--DFGK--RQIMTKIINSVIG 233 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~--~~~~~~i~~~~~~ 233 (883)
+++.|-+...+.+.+...-+- ++.....+-|.++|++|.||+.||++|..... -|++ .++....+ +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm----G 208 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM----G 208 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh----c
Confidence 467788888888777654321 12234478899999999999999999987763 2222 22222221 1
Q ss_pred CCCCCCChHHHHHHHHHHc-CCCceEEEEeCCCC
Q 038265 234 GNHGNLDPDRMQKVLRDSL-NGKRYLLVMDDVWN 266 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~ 266 (883)
+ .+.+..-+.+.. .+|.-.|++|.++.
T Consensus 209 E------SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 209 E------SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred c------HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1 233333333332 46889999999864
No 280
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.81 E-value=0.062 Score=52.09 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCC---------CcHHHHHHHHHHHh--hCCC------------CCCCChHHHHH-
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKD---------FGKRQIMTKIINSV--IGGN------------HGNLDPDRMQK- 246 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~---------~~~~~~~~~i~~~~--~~~~------------~~~~~~~~~~~- 246 (883)
-.+++|.|..|.|||||++.+...... .+.........+.+ ..+. ....+..+.+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 358999999999999999999776421 11111111111111 0111 11122222222
Q ss_pred HHHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 247 VLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 247 ~l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
.+...+-.++=++++|+.... |....+.+...+.....+..||++|.+.....
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 244555677788899987532 33333444444433224677899998877654
No 281
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.81 E-value=0.023 Score=60.50 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=52.9
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC----------------CCCcHHHHHHHHHHHhhCCC
Q 038265 172 DGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ----------------KDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----------------~~~~~~~~~~~i~~~~~~~~ 235 (883)
...++++.+..- .+..-+.|+|.+|+|||||++.+.+.. ..-++.+++..+...+....
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 344577776532 223466999999999999999876532 33456777777776654322
Q ss_pred CCCCChH------HHHHHHHHH-cCCCceEEEEeCC
Q 038265 236 HGNLDPD------RMQKVLRDS-LNGKRYLLVMDDV 264 (883)
Q Consensus 236 ~~~~~~~------~~~~~l~~~-l~~kr~LlvlDdv 264 (883)
....... ...+....+ -.+++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1111111 111111221 1579999999998
No 282
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.062 Score=51.67 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCC---------cHHHHH-HHHHHHh--hCCCCCC---------CChHHHHH-HH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDF---------GKRQIM-TKIINSV--IGGNHGN---------LDPDRMQK-VL 248 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------~~~~~~-~~i~~~~--~~~~~~~---------~~~~~~~~-~l 248 (883)
-.+++|.|..|.|||||.+.+....... +....- ....+.+ ....... .+..+.++ .+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 4589999999999999999997764211 111100 0111111 0111000 12222222 24
Q ss_pred HHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 249 RDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 249 ~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
...+..+.=+++||+... -|....+.+...+.....+..||++|.+.....
T Consensus 108 a~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 108 ARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 455667778999998743 233344444444433233567889998876654
No 283
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.76 E-value=0.018 Score=68.74 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=70.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----CCc---HHHHHHHHHH-HhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK----DFG---KRQIMTKIIN-SVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~---~~~~~~~i~~-~~~~~ 234 (883)
...++|+...+.++.+.+.... ..-.-|.|+|..|+|||++|+.+++... +|- -..+....+. .+.+.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~ 450 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 450 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCc
Confidence 3469999999999887776432 2234789999999999999999987541 111 0111111111 11121
Q ss_pred CCCCCC--hHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCC-----------CCCEEEEeecCh
Q 038265 235 NHGNLD--PDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRSN 295 (883)
Q Consensus 235 ~~~~~~--~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 295 (883)
...... .......+ -....=.|+||+|..........+...+.... .+.|||.||...
T Consensus 451 ~~~~~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 451 ERGAFTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred ccccccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111100 00011111 11234569999998776655566666654321 345888888653
No 284
>PRK07667 uridine kinase; Provisional
Probab=95.71 E-value=0.014 Score=57.44 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 173 GEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+.+.+.+.... ....+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666664422 34589999999999999999888653
No 285
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.70 E-value=0.017 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
++.|.|.+|+||||+|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999888655
No 286
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.69 E-value=0.32 Score=52.43 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 170 YEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+...+.+.+.+.... .....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344566677675532 2567899999999999999998885543
No 287
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.66 E-value=0.22 Score=51.64 Aligned_cols=49 Identities=33% Similarity=0.387 Sum_probs=36.0
Q ss_pred CCccccchhhHHH---HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEK---IIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+.+||..+..+. +++++.... -..+.|.|+|++|.|||+||..+.+..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 4679998766553 556654432 346789999999999999998886653
No 288
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.65 E-value=0.0074 Score=54.91 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 038265 194 IPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~~ 215 (883)
|+|.|++|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999997764
No 289
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.65 E-value=0.037 Score=56.76 Aligned_cols=163 Identities=20% Similarity=0.187 Sum_probs=88.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCC--------------cHHHHHHHHHH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDF--------------GKRQIMTKIIN 229 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------~~~~~~~~i~~ 229 (883)
..++|-.++..++-+++....-. ....-|.|+|+.|.|||+|...+..+.+.+ ...-.+..|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 34889999988888887653211 223467899999999999997776553111 12334556665
Q ss_pred HhhCC----CCCCCChHHHHHHHHHHcC------CCceEEEEeCCCCCChhhHHHHHHhcC-----CCCCCCEEEEeecC
Q 038265 230 SVIGG----NHGNLDPDRMQKVLRDSLN------GKRYLLVMDDVWNEDPRAWGELKSLLL-----GGAEGSKILVTTRS 294 (883)
Q Consensus 230 ~~~~~----~~~~~~~~~~~~~l~~~l~------~kr~LlvlDdv~~~~~~~~~~l~~~l~-----~~~~gs~iivTtr~ 294 (883)
++..+ .....+..+....+-..|+ +-++.+|+|.++-.....-..+.-.+. ...|=|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 55211 1112223333344444443 245888888875432222222222221 23566778899996
Q ss_pred hHHH---HHHcccCCC-CceecCCCChhcHHHHHHHHH
Q 038265 295 NKVA---LIMGTMRGT-TGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 295 ~~v~---~~~~~~~~~-~~~~l~~L~~~~a~~lf~~~a 328 (883)
.-.. +.....-.. .++-.+.++-++-..+++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 3221 122111111 244556666677666666655
No 290
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.11 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+.++|+++|++|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999988754
No 291
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.61 E-value=0.089 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 292
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.60 E-value=0.097 Score=53.63 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=60.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC------------------C------CCcHHHHHH--------------HHHHHhh
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ------------------K------DFGKRQIMT--------------KIINSVI 232 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~------------------~------~~~~~~~~~--------------~i~~~~~ 232 (883)
-.+++|+|..|+|||||++.+.... + .....+.+. +++..+.
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 4699999999999999999996543 0 011222211 1111110
Q ss_pred -----CCCCCCCChHHHHH-HHHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCC--CCCCEEEEeecChHHHHHH
Q 038265 233 -----GGNHGNLDPDRMQK-VLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG--AEGSKILVTTRSNKVALIM 301 (883)
Q Consensus 233 -----~~~~~~~~~~~~~~-~l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~ 301 (883)
.......+..+.+. .+...|..+.=+++||..-.. |......+...+... ..|..||++|.+...+...
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 01111223333332 244566677889999987332 333333343333321 2366799999887665543
No 293
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.038 Score=56.62 Aligned_cols=75 Identities=24% Similarity=0.259 Sum_probs=44.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccCC-------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEe
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQK-------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMD 262 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlD 262 (883)
+..-+.++|.+|+|||.||.++.+..- -+...+++.++...... . .....+.+.++ +-=|||||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~----~----~~~~~l~~~l~-~~dlLIiD 174 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE----G----RLEEKLLRELK-KVDLLIID 174 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc----C----chHHHHHHHhh-cCCEEEEe
Confidence 355789999999999999999987652 12344555555443321 1 11112222221 22388999
Q ss_pred CCCCCChhhHH
Q 038265 263 DVWNEDPRAWG 273 (883)
Q Consensus 263 dv~~~~~~~~~ 273 (883)
|+-......|.
T Consensus 175 DlG~~~~~~~~ 185 (254)
T COG1484 175 DIGYEPFSQEE 185 (254)
T ss_pred cccCccCCHHH
Confidence 99765444444
No 294
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.56 E-value=0.048 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=19.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+++|.++|+.|+||||.+.+++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH
Confidence 36999999999999998866643
No 295
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.54 E-value=0.077 Score=51.04 Aligned_cols=108 Identities=19% Similarity=0.085 Sum_probs=56.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHH-HHHHhhCCCCCCCChHHHH-HHHHHHcCCCceEEEEeCCCCC-
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTK-IINSVIGGNHGNLDPDRMQ-KVLRDSLNGKRYLLVMDDVWNE- 267 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlvlDdv~~~- 267 (883)
-.+++|+|+.|.|||||++.+..-..+..-.-.+.. -+. ..... ...+..+.+ -.+...+..+.-++++|+.-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~q~-~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV-YKPQY-IDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE-EEccc-CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 359999999999999999999765421110000000 000 00000 013333322 2345566677889999987432
Q ss_pred ChhhHHHHHHhcCCC-CC-CCEEEEeecChHHHHH
Q 038265 268 DPRAWGELKSLLLGG-AE-GSKILVTTRSNKVALI 300 (883)
Q Consensus 268 ~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~~ 300 (883)
|......+...+... .. +..||++|.+......
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 333333333333321 12 3568888888765543
No 296
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.53 E-value=0.079 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998765
No 297
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.52 E-value=0.11 Score=48.22 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=57.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHH-HHHHHHcCCCceEEEEeCCCC-CC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQ-KVLRDSLNGKRYLLVMDDVWN-ED 268 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlvlDdv~~-~~ 268 (883)
-.+++|.|..|.|||||++.+........-.-.+.. ...+ +- ....+..+.+ -.+...+..+.=++++|+.-. -|
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~-~~~i-~~-~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS-TVKI-GY-FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC-eEEE-EE-EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 359999999999999999999775422110000000 0000 00 0013333322 234556667778899998743 24
Q ss_pred hhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 269 PRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 269 ~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
....+.+...+... +..||++|.+.....
T Consensus 103 ~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 103 LESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 44455555555433 346888888766553
No 298
>PRK13695 putative NTPase; Provisional
Probab=95.50 E-value=0.037 Score=53.47 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988655
No 299
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.2 Score=48.97 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=35.1
Q ss_pred HHHHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCC-CCCCCEEEEeecChHHHHHHcc
Q 038265 246 KVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLG-GAEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 246 ~~l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~ 303 (883)
..+.+.+--++-+.|||..++- |.++...+...+.. ..+|+.++|.|..+.++.....
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~p 212 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP 212 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCC
Confidence 3444445556779999998652 33344444333321 2347778888888888876643
No 300
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.46 E-value=0.017 Score=60.51 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=44.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|+|.++.++++++.+.....+.+.+-+|+.++|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999987665556778999999999999999998886554
No 301
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.45 E-value=0.12 Score=47.54 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=66.3
Q ss_pred Cccc-chH-HHHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhcccC-ChHHHHHHHHHHhhhcchhhhh
Q 038265 2 VESF-FPI-EKLLEKLGSFAYEELLLFCGVKNDLEKLKETLTTVKSVVLDAEEKQVH-SHQLRDWLEKLKDACYDAEDAL 78 (883)
Q Consensus 2 a~~~-~~v-~~~~~kl~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~-~~~v~~wl~~l~~~~~d~ed~l 78 (883)
||.+ .|+ +.+++.+...+.+.......++.-+++|..+++.|..++++.+.-+.. +..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 4445 344 888999999999999999999999999999999999999998875433 3333677889999999999999
Q ss_pred hhhh
Q 038265 79 DEFE 82 (883)
Q Consensus 79 d~~~ 82 (883)
..|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 9873
No 302
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.40 E-value=0.011 Score=58.14 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
||+|.|.+|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999886544
No 303
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.36 E-value=0.057 Score=53.54 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.8
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 188 SETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 188 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+..+|.++||+|+||||..++++.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 3567789999999999999999987654
No 304
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.36 E-value=0.13 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||++.+...
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999654
No 305
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.016 Score=52.86 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHHHh
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIINSV 231 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~~~ 231 (883)
+|.|.|++|+||||+|+.+.++. ...+...++.++.++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~ 42 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARER 42 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHc
Confidence 68999999999999999998886 4555667788877664
No 306
>PRK08233 hypothetical protein; Provisional
Probab=95.35 E-value=0.014 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4699999999999999999997654
No 307
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.099 Score=50.39 Aligned_cols=110 Identities=24% Similarity=0.266 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCC---------cHHHHHHHHHHHh--hCCC---CCC--------CChHHHHH-H
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDF---------GKRQIMTKIINSV--IGGN---HGN--------LDPDRMQK-V 247 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------~~~~~~~~i~~~~--~~~~---~~~--------~~~~~~~~-~ 247 (883)
-.+++|+|..|.|||||++.+.....+. .....-......+ ..+. ... .+..+.+. .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 4589999999999999999997754211 1110001111111 0111 011 12222222 3
Q ss_pred HHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCC-CCCCEEEEeecChHHHHH
Q 038265 248 LRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG-AEGSKILVTTRSNKVALI 300 (883)
Q Consensus 248 l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 300 (883)
+...+..++=++++|+.-.. |....+.+...+... ..|..||++|.+......
T Consensus 106 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 55566778889999987432 333334444444321 236778999988775543
No 308
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.33 E-value=0.046 Score=54.00 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=57.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC-----CCC-----cHHHHHHHHHHHhhCCCCCCCChHHHH---HHHHHH--cCCC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ-----KDF-----GKRQIMTKIINSVIGGNHGNLDPDRMQ---KVLRDS--LNGK 255 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~-----~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~l~~~--l~~k 255 (883)
.++++|.|+.|.||||+.+.+.--. .-| ..-.+...+...+.............. ..+... +..+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 4789999999999999998875321 111 011122222222211111111111111 112222 2457
Q ss_pred ceEEEEeCCCCC-Chhh----HHHHHHhcCCCCCCCEEEEeecChHHHHHHcc
Q 038265 256 RYLLVMDDVWNE-DPRA----WGELKSLLLGGAEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 256 r~LlvlDdv~~~-~~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 303 (883)
+-|+++|..-.. +..+ ...+...+.. .|+.+|+||.+..++.....
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 889999997432 1111 1123333333 37899999999988876654
No 309
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.29 E-value=0.013 Score=46.35 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988654
No 310
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.28 E-value=0.025 Score=55.84 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=54.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccCCCC---------cHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQKDF---------GKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
+|.|+|+.|+||||++..+....... +..+....-............+.....+.++..++...=.+++|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 78999999999999998875544110 000111000000000000111223455677788887788999999
Q ss_pred CCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHH
Q 038265 264 VWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA 298 (883)
Q Consensus 264 v~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 298 (883)
+. +......+.... ..|..++.|+....+.
T Consensus 83 ir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 83 MR--DLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CC--CHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 94 332333333222 2455677777766554
No 311
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.26 Score=55.83 Aligned_cols=187 Identities=17% Similarity=0.116 Sum_probs=100.5
Q ss_pred CccCCccccchhhHHHHHH---HHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhC
Q 038265 160 FVRTSDIIGRYEDGEKIIE---LLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIG 233 (883)
Q Consensus 160 ~~~~~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~ 233 (883)
.+...+..|.++..+++.+ .|..+.. -+..-++=|.++|++|.|||.||+++............-.+.+....
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV- 224 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV- 224 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc-
Confidence 3456778898877666554 4544321 12244678999999999999999999888732211111111222221
Q ss_pred CCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC----------hhhHHHHHHhc----CCCC--CCCEEEEeecChHH
Q 038265 234 GNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGELKSLL----LGGA--EGSKILVTTRSNKV 297 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~~~~~l~~~l----~~~~--~gs~iivTtr~~~v 297 (883)
........+...+..++-++.|++|.++... ..++++-...+ .... .|-.|+..|-.++|
T Consensus 225 ----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdV 300 (596)
T COG0465 225 ----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDV 300 (596)
T ss_pred ----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCccc
Confidence 1223344556666777778999999886421 23344433322 2222 23333434444555
Q ss_pred HHHHcc--cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch
Q 038265 298 ALIMGT--MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL 355 (883)
Q Consensus 298 ~~~~~~--~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 355 (883)
....-. ..-++.+.++..+-..-.+.+.-++........-++. .|++.+-|.--
T Consensus 301 lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 301 LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCccc
Confidence 533222 2223556666666666677777666332222112222 26666666543
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.25 E-value=0.14 Score=48.87 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCC---------------------CcHHHHHHHHHHHhhCCCCCCCChHHHH-HHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKD---------------------FGKRQIMTKIINSVIGGNHGNLDPDRMQ-KVL 248 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~l 248 (883)
-.+++|+|..|.|||||++.+...... +....+...+.. ......+..+.+ -.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHHHHH
Confidence 458999999999999999999765310 011111222110 012223333332 234
Q ss_pred HHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCCCCCCEEEEeecChHHH
Q 038265 249 RDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGGAEGSKILVTTRSNKVA 298 (883)
Q Consensus 249 ~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 298 (883)
...+..++=++++|+.-. .|......+...+... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 455667777889997633 2333333444444332 45688888886654
No 313
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.24 E-value=0.16 Score=50.31 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=39.6
Q ss_pred CChHHHHH-HHHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCC--CCCCEEEEeecChHHHHHHc
Q 038265 239 LDPDRMQK-VLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG--AEGSKILVTTRSNKVALIMG 302 (883)
Q Consensus 239 ~~~~~~~~-~l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~ 302 (883)
.+..+.++ .+.+.|-.++-+|+-|+--. -|...-+.+...+... ..|..||+.|.++.++..+.
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34444333 46667788888999996421 1333334444444432 34778999999999997653
No 314
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.12 Score=61.18 Aligned_cols=115 Identities=19% Similarity=0.292 Sum_probs=72.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCC--CCeEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHHHHHHHhhCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGES--ETVSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMTKIINSVIGG 234 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~~i~~~~~~~ 234 (883)
..++|-++.+..|.+.+.....+-. .....+.+.|+.|+|||-||+++..-. -..+..++.. ...+.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e--vskligs 639 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE--VSKLIGS 639 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh--hhhccCC
Confidence 4678888888888888876432211 256788889999999999998885543 2234555554 3344333
Q ss_pred CCCCCChHHHHHHHHHHcCCCce-EEEEeCCCCCChhhHHHHHHhcCC
Q 038265 235 NHGNLDPDRMQKVLRDSLNGKRY-LLVMDDVWNEDPRAWGELKSLLLG 281 (883)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~kr~-LlvlDdv~~~~~~~~~~l~~~l~~ 281 (883)
...- -..+....+.+.+++++| +|+||||+..+......+...+..
T Consensus 640 p~gy-vG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 640 PPGY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred Cccc-ccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 2221 122333467777877776 777999987776555544455543
No 315
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.24 E-value=0.017 Score=57.63 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998754
No 316
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.23 E-value=0.016 Score=57.92 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+..+|+|.|.+|+||||||+.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999987653
No 317
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.23 E-value=0.082 Score=50.95 Aligned_cols=109 Identities=21% Similarity=0.269 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCC---------cHHHH-HHHHHHHh--hCCCCC--C-------CChHHHHH-HH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDF---------GKRQI-MTKIINSV--IGGNHG--N-------LDPDRMQK-VL 248 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------~~~~~-~~~i~~~~--~~~~~~--~-------~~~~~~~~-~l 248 (883)
-.+++|+|..|.|||||.+.+.....+. +.... .....+.+ ..+... . .+..+.++ .+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~l 107 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHH
Confidence 3589999999999999999997654111 11000 00111111 111110 0 22222222 24
Q ss_pred HHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCC-CCCCCEEEEeecChHHHH
Q 038265 249 RDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLG-GAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 249 ~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 299 (883)
...+..+.=+++||+... -|......+...+.. ...|..||++|.+.....
T Consensus 108 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 445566777889998743 233333344444332 123677889988876553
No 318
>PRK06547 hypothetical protein; Provisional
Probab=95.19 E-value=0.026 Score=54.06 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
....+|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 557899999999999999999997653
No 319
>PTZ00301 uridine kinase; Provisional
Probab=95.18 E-value=0.015 Score=57.59 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..+|||.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999987754
No 320
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.17 E-value=0.18 Score=63.81 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+-|.++|++|.|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35678999999999999999999887
No 321
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.14 E-value=0.041 Score=54.87 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=55.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc-----CCCCc-----HHHHHHHHHHHhhCCCCCCC---ChHHHHHHHHH--HcCCC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND-----QKDFG-----KRQIMTKIINSVIGGNHGNL---DPDRMQKVLRD--SLNGK 255 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~-----~~~~~-----~~~~~~~i~~~~~~~~~~~~---~~~~~~~~l~~--~l~~k 255 (883)
.+++.|+|+.|.||||+.+.+... ...+- ....+.++...+........ ....-.+.+.. .+..+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 478999999999999999887521 10000 00111122211111110000 01111111222 23467
Q ss_pred ceEEEEeCCCCCC-hhhHH----HHHHhcCCC-CCCCEEEEeecChHHHHHHc
Q 038265 256 RYLLVMDDVWNED-PRAWG----ELKSLLLGG-AEGSKILVTTRSNKVALIMG 302 (883)
Q Consensus 256 r~LlvlDdv~~~~-~~~~~----~l~~~l~~~-~~gs~iivTtr~~~v~~~~~ 302 (883)
+-|++||..-... ..+.. .+...+... ..+..+|+||.+.+.+....
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 8999999985432 11111 122233222 23457999999988876653
No 322
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.14 E-value=0.068 Score=61.27 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=40.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...++|+...++++.+.+.... ..-.-|.|+|..|+|||++|+.++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4679999999999998886643 334578999999999999999998764
No 323
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.16 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999654
No 324
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.13 E-value=0.19 Score=49.94 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999654
No 325
>PRK14527 adenylate kinase; Provisional
Probab=95.12 E-value=0.1 Score=51.29 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=42.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHH----------HhhCCCCCCCChHHHHHHHHHHcCCCc-
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIIN----------SVIGGNHGNLDPDRMQKVLRDSLNGKR- 256 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~----------~~~~~~~~~~~~~~~~~~l~~~l~~kr- 256 (883)
...+|.|+|++|+||||+|+.+.+.. ...+...++..... ..... ......+.....+.+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~-g~~~p~~~~~~l~~~~l~~~~~ 83 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEA-GDLVPDELILALIRDELAGMEP 83 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCC
Confidence 45799999999999999999987654 33333333332211 11111 111223345556666665411
Q ss_pred eEEEEeCCC
Q 038265 257 YLLVMDDVW 265 (883)
Q Consensus 257 ~LlvlDdv~ 265 (883)
.-+|+|+..
T Consensus 84 ~~~VlDGfp 92 (191)
T PRK14527 84 VRVIFDGFP 92 (191)
T ss_pred CcEEEcCCC
Confidence 248899875
No 326
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.11 E-value=0.24 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|+.|+|||||.+.++.-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999999763
No 327
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.10 E-value=0.21 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|..|.|||||++.+..-
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999643
No 328
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.12 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
-.+++|+|+.|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999865
No 329
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.17 Score=49.86 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..++||+|..|.|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999843
No 330
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.064 Score=51.59 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 331
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.17 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+++|+|+.|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999743
No 332
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.09 E-value=0.078 Score=62.36 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...++|+|..|.|||||++.+..-
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998543
No 333
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.08 E-value=0.12 Score=52.81 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=30.4
Q ss_pred HHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 250 DSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 250 ~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
..+-.++=+++||+.... |....+.+...+.....|..||++|.+.....
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 151 RALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 344455679999987432 44344444444433224677999999887654
No 334
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.08 E-value=0.14 Score=52.80 Aligned_cols=106 Identities=17% Similarity=0.077 Sum_probs=58.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccCCCC---------cHH--HHHHHHHHHhh--CCCC-----CCCChHHHHHHHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQKDF---------GKR--QIMTKIINSVI--GGNH-----GNLDPDRMQKVLRDS 251 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------~~~--~~~~~i~~~~~--~~~~-----~~~~~~~~~~~l~~~ 251 (883)
+..-++|+|+.|.|||||.+.+....... +.. .-..++..... .... ...+...-...+...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~ 189 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMML 189 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHH
Confidence 35789999999999999999998765221 111 11123322211 1100 111111111122222
Q ss_pred c-CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHH
Q 038265 252 L-NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALI 300 (883)
Q Consensus 252 l-~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 300 (883)
+ ...+=++++|.+- ....+..+...+. .|..||+||.+..+...
T Consensus 190 i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 190 IRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 2 3578899999984 3334555555443 47789999998766443
No 335
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.07 E-value=0.19 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-.+++|.|..|.|||||.+.+....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997654
No 336
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.021 Score=55.76 Aligned_cols=27 Identities=41% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++.+|||.|.+|+||||+|+.++...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998765
No 337
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.04 E-value=0.15 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999988643
No 338
>PRK06762 hypothetical protein; Provisional
Probab=95.03 E-value=0.018 Score=55.24 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 339
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.01 E-value=0.15 Score=56.90 Aligned_cols=109 Identities=26% Similarity=0.358 Sum_probs=58.4
Q ss_pred eEEEEEEcCCCCcHHH-HHHHHHccC------------CCCcHHHHHHHHHHHhh---CCCC-------CCCChHHH---
Q 038265 191 VSVIPIVGIGGLGKTA-LAKLVYNDQ------------KDFGKRQIMTKIINSVI---GGNH-------GNLDPDRM--- 244 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTt-La~~v~~~~------------~~~~~~~~~~~i~~~~~---~~~~-------~~~~~~~~--- 244 (883)
-.||.|+|..|+|||| ||+.+|.+- .......+.+.+.+++. +... ...+.+..
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~Iky 450 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKY 450 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEEE
Confidence 4699999999999987 678888764 11222333444444441 1110 00011100
Q ss_pred ---HHHHHHHcC----CCceEEEEeCCCCCChhhHHHHHHhc---CCCCCCCEEEEeecChHHHHH
Q 038265 245 ---QKVLRDSLN----GKRYLLVMDDVWNEDPRAWGELKSLL---LGGAEGSKILVTTRSNKVALI 300 (883)
Q Consensus 245 ---~~~l~~~l~----~kr~LlvlDdv~~~~~~~~~~l~~~l---~~~~~gs~iivTtr~~~v~~~ 300 (883)
.-.+++.|+ .|--.||+|.+++... .-+.+...+ ......-|+||||-..+....
T Consensus 451 mTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliVtSATm~a~kf 515 (1042)
T KOG0924|consen 451 MTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIVTSATMDAQKF 515 (1042)
T ss_pred eccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEEeeccccHHHH
Confidence 012344444 4556899999976542 122222222 223347799999987655443
No 340
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.00 E-value=0.17 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|+|+||+|+||||.|+.+-..
T Consensus 2 iI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhc
Confidence 7999999999999999988544
No 341
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.99 E-value=0.24 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999654
No 342
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.97 E-value=0.15 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999998654
No 343
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.97 E-value=0.3 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=94.95 E-value=0.16 Score=54.00 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+..+|+++|++|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997766643
No 345
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.94 E-value=0.13 Score=54.07 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=31.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++=..+....+..++.. .+-|.|.|.+|+||||+|+.+....
T Consensus 46 ~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHHH
Confidence 444444555667777743 2358999999999999999997754
No 346
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.94 E-value=0.047 Score=58.84 Aligned_cols=104 Identities=21% Similarity=0.162 Sum_probs=60.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccCCC-----CcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQKD-----FGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDD 263 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDd 263 (883)
...+=+-|||..|.|||.|+-.+|+.... ..--.++.++-+.+....... .....+.+.+.++..||.+|.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~----~~l~~va~~l~~~~~lLcfDE 135 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD----DPLPQVADELAKESRLLCFDE 135 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC----ccHHHHHHHHHhcCCEEEEee
Confidence 44678899999999999999999987622 122244444444443222111 123344566677777999999
Q ss_pred CCCCChhhHHHHHHhcCC-CCCCCEEEEeecChHH
Q 038265 264 VWNEDPRAWGELKSLLLG-GAEGSKILVTTRSNKV 297 (883)
Q Consensus 264 v~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v 297 (883)
..=.|..+---+...+.. ...|. |||+|.|...
T Consensus 136 F~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 136 FQVTDIADAMILKRLFEALFKRGV-VLVATSNRPP 169 (362)
T ss_pred eeccchhHHHHHHHHHHHHHHCCC-EEEecCCCCh
Confidence 865554443333333332 23454 5555555433
No 347
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.91 E-value=0.19 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..-+|.++.|+.|.||||+.+.+..
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 4467999999999999999998844
No 348
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.90 E-value=0.1 Score=59.15 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+++--.+-++++..||..... +....+++.+.|++|+||||.++.+++..
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455556667889999865321 22345699999999999999999998765
No 349
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.88 E-value=0.17 Score=57.72 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|+...+.++...+.... .....|.|+|.+|+|||++|+.++...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 358999988888877765422 234468899999999999999998865
No 350
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.0011 Score=65.43 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=24.7
Q ss_pred cccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCC
Q 038265 561 SLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGD 616 (883)
Q Consensus 561 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 616 (883)
+.+.|++.+|++..+ ....+++.|++|.||-|. +..+.. +..|++|+.|+|+.
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRk 72 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRK 72 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHh
Confidence 344455555555443 123345555555555544 333322 44455555555554
No 351
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.87 E-value=0.17 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999988654
No 352
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.87 E-value=0.23 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 353
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.85 E-value=0.071 Score=53.49 Aligned_cols=73 Identities=12% Similarity=0.223 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHH----------HhhCCCCCCCChHHHHHHHHHHcCCC--ceE
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIIN----------SVIGGNHGNLDPDRMQKVLRDSLNGK--RYL 258 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~----------~~~~~~~~~~~~~~~~~~l~~~l~~k--r~L 258 (883)
.|.|.|++|+||||+|+.+.... ...+..+++.+.+. ..... ......+.....+.+.++.. .--
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~-g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDA-GELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhccCccCC
Confidence 47899999999999999987664 22222223322211 11111 12233444555666666442 225
Q ss_pred EEEeCCCC
Q 038265 259 LVMDDVWN 266 (883)
Q Consensus 259 lvlDdv~~ 266 (883)
+|||+.+.
T Consensus 81 ~VlDGfPr 88 (215)
T PRK00279 81 FLLDGFPR 88 (215)
T ss_pred EEEecCCC
Confidence 89999864
No 354
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.85 E-value=0.28 Score=48.78 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 359999999999999999999654
No 355
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.85 E-value=0.08 Score=51.88 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=30.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--CCcHHHHHHHHHHHhh
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--DFGKRQIMTKIINSVI 232 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~~~~~~~i~~~~~ 232 (883)
..+|.|.|.+|+||||+|+.+..... .....+.+.+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~ 46 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYV 46 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhc
Confidence 46899999999999999999988752 2234455555555443
No 356
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.84 E-value=0.12 Score=49.74 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC---------CCCcHHH----HHHHHHHHhhCC------CCCCCChHHHHH-HHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ---------KDFGKRQ----IMTKIINSVIGG------NHGNLDPDRMQK-VLRD 250 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~---------~~~~~~~----~~~~i~~~~~~~------~~~~~~~~~~~~-~l~~ 250 (883)
-.+++|+|+.|+|||||.+.+..+. ..+.... ...+.+..+.-. .....+..+.+. .+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 4589999999999999999885322 0010000 012233333211 111223333222 2344
Q ss_pred HcCCC--ceEEEEeCCCC-CChhhHHHHHHhcCCC-CCCCEEEEeecChHHHH
Q 038265 251 SLNGK--RYLLVMDDVWN-EDPRAWGELKSLLLGG-AEGSKILVTTRSNKVAL 299 (883)
Q Consensus 251 ~l~~k--r~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 299 (883)
.+..+ .=++++|+.-. -|....+.+...+... ..|..||++|.+.....
T Consensus 101 al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 55556 67888898633 2333444444444321 24677999999877653
No 357
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.84 E-value=0.026 Score=57.29 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....+|+|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988654
No 358
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.17 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|+|||||++.+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999654
No 359
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.83 E-value=0.24 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||.+.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999754
No 360
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.83 E-value=0.2 Score=58.99 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999854
No 361
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.15 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998644
No 362
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.79 E-value=0.19 Score=50.40 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 363
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.78 E-value=0.02 Score=55.40 Aligned_cols=26 Identities=42% Similarity=0.575 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...+|.+.|+.|+||||+|+.++...
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999997654
No 364
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.21 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999653
No 365
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.75 E-value=0.19 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|..|.|||||.+.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999643
No 366
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.75 E-value=0.18 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999654
No 367
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.75 E-value=0.2 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 459999999999999999999754
No 368
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.72 E-value=0.27 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|..|.|||||++.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999654
No 369
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.71 E-value=0.023 Score=55.69 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|+|.|++|+||||+|+.+....
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999987554
No 370
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.70 E-value=0.31 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..||+|+|+.|+|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45999999999999999999854
No 371
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.70 E-value=0.076 Score=49.85 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=44.4
Q ss_pred EEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHH----------HhhCCCCCCCChHHHHHHHHHHcCC--CceEEEE
Q 038265 196 IVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIIN----------SVIGGNHGNLDPDRMQKVLRDSLNG--KRYLLVM 261 (883)
Q Consensus 196 I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~----------~~~~~~~~~~~~~~~~~~l~~~l~~--kr~Llvl 261 (883)
|.|++|+||||+|+.+..+. ...+...++.+.+. +.... -.....+-+.+.+...+.. ..--+||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~-g~~vp~~~v~~ll~~~l~~~~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDN-GELVPDELVIELLKERLEQPPCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHT-TSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHh-hccchHHHHHHHHHHHHhhhcccceeee
Confidence 68999999999999998875 23344444443322 11111 1122344555666666643 3566889
Q ss_pred eCCCCCChhhHHHHHH
Q 038265 262 DDVWNEDPRAWGELKS 277 (883)
Q Consensus 262 Ddv~~~~~~~~~~l~~ 277 (883)
|+.= .+..+.+.+..
T Consensus 80 dGfP-rt~~Qa~~l~~ 94 (151)
T PF00406_consen 80 DGFP-RTLEQAEALEE 94 (151)
T ss_dssp ESB--SSHHHHHHHHH
T ss_pred eecc-ccHHHHHHHHH
Confidence 9983 23333444443
No 372
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.69 E-value=0.19 Score=51.03 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|+.|.|||||.+.+...
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999654
No 373
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.68 E-value=0.18 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999643
No 374
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.67 E-value=0.11 Score=47.09 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=19.8
Q ss_pred hccCCcccEEEecCcccccccc-ccCCCCCceEecccCCccccccC-ccccCCCcccEeecC
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLG 615 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~ 615 (883)
|.++.+|+.+.+.. .+..++. .+.++.+|+.+.+.++ +..++ ..+..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 44455555555543 2333332 2444445555555432 22222 223344445555553
No 375
>PRK04040 adenylate kinase; Provisional
Probab=94.66 E-value=0.024 Score=55.19 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999887764
No 376
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.65 E-value=0.26 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||.+.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999754
No 377
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.65 E-value=0.12 Score=59.83 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999543
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.64 E-value=0.22 Score=54.60 Aligned_cols=56 Identities=23% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcc
Q 038265 247 VLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 247 ~l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 303 (883)
.+.+.|-.++.|+.||+--.. |...-.-+..+|.....+ .++|++|.++......+
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhh
Confidence 345556678899999986432 322333344555443333 68999999887766554
No 379
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.26 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|+|||||++.+...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 380
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.19 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999643
No 381
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.63 E-value=0.17 Score=50.98 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=67.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--------------CCc---HHHHHHHHHHHhh------CCCCCCCChHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--------------DFG---KRQIMTKIINSVI------GGNHGNLDPDRMQKV 247 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--------------~~~---~~~~~~~i~~~~~------~~~~~~~~~~~~~~~ 247 (883)
..+++|+|..|.||||+++.+..-.. .+. ...-..+++..+. .......+..+.++.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 45999999999999999999976541 111 2223344444432 112233344455543
Q ss_pred -HHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCC--CCCCCEEEEeecChHHHHHHcc
Q 038265 248 -LRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLG--GAEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 248 -l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~ 303 (883)
+.+.+.-+.-++|.|..-+. |...-.++...+.+ ...|-..+..|.+-.++..+..
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 56678889999999987432 22112333333332 2346678888888888776543
No 382
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.61 E-value=0.28 Score=49.20 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999654
No 383
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.61 E-value=0.3 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|.|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999654
No 384
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.59 E-value=0.15 Score=59.15 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....++|+|..|.|||||++.+..-
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998553
No 385
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.58 E-value=0.023 Score=33.27 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=10.4
Q ss_pred ccEEEecCccccccccccC
Q 038265 562 LRVLVLMNSAIEVLPRKMG 580 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~ 580 (883)
|++|++++|.++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555443
No 386
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.57 E-value=0.11 Score=49.06 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=58.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC---------------C-CCcHHHHHHHHHHHh--hCCC--CCCCCh-------HHH
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ---------------K-DFGKRQIMTKIINSV--IGGN--HGNLDP-------DRM 244 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~---------------~-~~~~~~~~~~i~~~~--~~~~--~~~~~~-------~~~ 244 (883)
..|-|++..|.||||.|..+.-+. . ..+....+....-.+ .+.. +...+. .+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 85 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAA 85 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHH
Confidence 478888889999999996554332 1 223333433320000 1111 111111 112
Q ss_pred HHHHHHHcCCCc-eEEEEeCCCC---CChhhHHHHHHhcCCCCCCCEEEEeecChH
Q 038265 245 QKVLRDSLNGKR-YLLVMDDVWN---EDPRAWGELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 245 ~~~l~~~l~~kr-~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
-+..++.+...+ =|+|||.+-. ....+.+++...+....++.-||+|-|+..
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 233444554544 4999998731 123345567777777777889999999853
No 387
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.56 E-value=0.11 Score=47.09 Aligned_cols=104 Identities=13% Similarity=0.291 Sum_probs=57.1
Q ss_pred ccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccccc-ccCCCCCceEecccCCccccccC-cccc
Q 038265 527 SFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLP-NSIC 604 (883)
Q Consensus 527 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~ 604 (883)
..|..+.+|+.+.+.. ....+....|..++.|+.+.+.++ +..++. .+.++.+|+.+.+.+ . ...++ ..+.
T Consensus 6 ~~F~~~~~l~~i~~~~----~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~ 78 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN----TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFS 78 (129)
T ss_dssp TTTTT-TT--EEEETS----T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTT
T ss_pred HHHhCCCCCCEEEECC----CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccccccc
Confidence 3466778888888752 233445567888989999999875 766654 467777899999975 3 44444 3455
Q ss_pred CCCcccEeecCCCCCCccCC-ccccCCcccCEEEeCC
Q 038265 605 ELQSLQTLNLGDCLELEELP-KDIRYLVSLRMFVVTT 640 (883)
Q Consensus 605 ~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~ 640 (883)
.+++|+.+++..+ ...++ ..+.++ +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6889999998653 33333 334554 666666654
No 388
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.55 E-value=0.052 Score=49.02 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 171 EDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
++..++-+.|...- ....+|.+.|.-|.||||+++.+.+..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34455555554321 223589999999999999999998764
No 389
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.54 E-value=0.29 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999754
No 390
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.12 Score=48.89 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCCCCc---------HHHH-HHHHHHHhhCCCCCCCChHHH-HHHHHHHcCCCceEEE
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQKDFG---------KRQI-MTKIINSVIGGNHGNLDPDRM-QKVLRDSLNGKRYLLV 260 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~~~~-~~~i~~~~~~~~~~~~~~~~~-~~~l~~~l~~kr~Llv 260 (883)
.+++|+|..|.|||||++.+........ .... .......+. -. ...+..+. .-.+...+....=+++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~-~~-~qlS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIG-YV-PQLSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceE-EE-eeCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5999999999999999999977542110 0000 001111110 00 00222222 2234555666778999
Q ss_pred EeCCCCC-ChhhHHHHHHhcCCC-CCCCEEEEeecChHHHHHH
Q 038265 261 MDDVWNE-DPRAWGELKSLLLGG-AEGSKILVTTRSNKVALIM 301 (883)
Q Consensus 261 lDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 301 (883)
+|+.-.. |......+...+... ..+..+|++|.+.......
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 9987432 333344444433321 1256788998887766543
No 391
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.2 Score=56.26 Aligned_cols=180 Identities=19% Similarity=0.114 Sum_probs=97.3
Q ss_pred ccccchhhHHHHHHHHhcCC-------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCC
Q 038265 165 DIIGRYEDGEKIIELLMQTS-------DGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHG 237 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~ 237 (883)
.+-|-...+..+.+...-+- ..+....+-+..+|++|+|||-++++|.++...|-...--.++++...++
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gE--- 261 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGE--- 261 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccc---
Confidence 45555656665555443211 01234467889999999999999999998875332222223344433332
Q ss_pred CCChHHHHHHHHHHcCCC-ceEEEEeCCCCCC----------hhhHHHHHHhcCCCCCCCEE--EEeecChHHHHHHcc-
Q 038265 238 NLDPDRMQKVLRDSLNGK-RYLLVMDDVWNED----------PRAWGELKSLLLGGAEGSKI--LVTTRSNKVALIMGT- 303 (883)
Q Consensus 238 ~~~~~~~~~~l~~~l~~k-r~LlvlDdv~~~~----------~~~~~~l~~~l~~~~~gs~i--ivTtr~~~v~~~~~~- 303 (883)
+...+.+.+.+..+.+ +..|.+|+++..- ..--.++...+.+..+.+++ |-||+.+.-....-.
T Consensus 262 --te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR 339 (693)
T KOG0730|consen 262 --TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR 339 (693)
T ss_pred --hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc
Confidence 3445666777777888 9999999885421 11122333333333333333 345555433221111
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCC
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGI 353 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 353 (883)
....+-+.+.-.+.++-.++++...-.-+.....++ ..|+..+.|.
T Consensus 340 gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l----~~iA~~thGy 385 (693)
T KOG0730|consen 340 GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDL----EDIAVSTHGY 385 (693)
T ss_pred CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhH----HHHHHHccch
Confidence 122345667777777777777766633332212233 4455555554
No 392
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.026 Score=54.33 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 393
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.22 Score=50.84 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 248 LRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 248 l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
+...+-.++=+++||+... -|....+.+...+.....|..||++|.+.....
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 200 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 3445566778999998753 233344445444443223667888888876654
No 394
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.50 E-value=0.033 Score=55.93 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=76.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC-----C-----CCcHHHHHHHHHHHhhCCCC--CCC-ChHHHHHHHHHHc--CC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ-----K-----DFGKRQIMTKIINSVIGGNH--GNL-DPDRMQKVLRDSL--NG 254 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~-----~-----~~~~~~~~~~i~~~~~~~~~--~~~-~~~~~~~~l~~~l--~~ 254 (883)
..+++.|.|+.|.||||+.+.+..-. . ..........++..+..... ... ....-...+...+ ..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~ 108 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSAT 108 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCC
Confidence 45799999999999999998875211 0 00000011111111110000 001 1111112222233 35
Q ss_pred CceEEEEeCCCCC----C--hhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccCCCCceecCCCChhcHHHHHHHHH
Q 038265 255 KRYLLVMDDVWNE----D--PRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 255 kr~LlvlDdv~~~----~--~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
.+-|++||..-.. | ...|..+ ..+.. ..|+.+|+||....+...+.....-...++.....++.-++-..+-
T Consensus 109 ~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~~~Y~ 186 (222)
T cd03285 109 ENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLTMLYK 186 (222)
T ss_pred CCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEeEEEE
Confidence 7889999998321 1 1122222 23322 2478899999987776654322111112221111110001100011
Q ss_pred hcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhc
Q 038265 329 FKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLY 365 (883)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 365 (883)
...+... ...+-++++.+ |+|-.+...|..+.
T Consensus 187 l~~G~~~----~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 187 VEKGACD----QSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred EeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 1112111 23356666666 89988888777664
No 395
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.50 E-value=0.058 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
++.|.|.+|+|||++|.++...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999877543
No 396
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.49 E-value=0.43 Score=48.08 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999654
No 397
>PRK10908 cell division protein FtsE; Provisional
Probab=94.47 E-value=0.45 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|+|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999654
No 398
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.24 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999654
No 399
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.46 E-value=0.38 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.+...
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999653
No 400
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.43 E-value=0.075 Score=53.09 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=41.5
Q ss_pred EEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHH----------HhhCCCCCCCChHHHHHHHHHHcCCC---ceE
Q 038265 194 IPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIIN----------SVIGGNHGNLDPDRMQKVLRDSLNGK---RYL 258 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~----------~~~~~~~~~~~~~~~~~~l~~~l~~k---r~L 258 (883)
|.|.|++|+||||+|+.+.... ...+..+++...+. +.... ......+.....+.+.+... ..-
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~-g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEK-GELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 6889999999999999997654 33334344433221 11111 12223344556666666541 345
Q ss_pred EEEeCCC
Q 038265 259 LVMDDVW 265 (883)
Q Consensus 259 lvlDdv~ 265 (883)
+|||+..
T Consensus 81 ~ilDGfP 87 (210)
T TIGR01351 81 FILDGFP 87 (210)
T ss_pred EEEeCCC
Confidence 7899974
No 401
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.43 E-value=0.24 Score=54.84 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...+|.++|.+|+||||.|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999877543
No 402
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.43 E-value=0.25 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 403
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.42 E-value=0.28 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999653
No 404
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.37 E-value=0.037 Score=51.45 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|-|.|.+|+||||||+++.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997653
No 405
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.032 Score=51.80 Aligned_cols=20 Identities=45% Similarity=0.755 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 038265 193 VIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~ 212 (883)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 406
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.35 E-value=0.021 Score=58.84 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+.|.|+|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999988664
No 407
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.35 E-value=0.31 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||.+.+..-
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999654
No 408
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.34 E-value=0.34 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999988654
No 409
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.33 E-value=0.27 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999998643
No 410
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.32 E-value=0.16 Score=61.09 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...|+|+|..|.|||||++.+..-
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999988543
No 411
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.32 E-value=0.026 Score=50.01 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 038265 194 IPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~~ 215 (883)
|.|+|.+|+||||+|+.+....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6799999999999999997765
No 412
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.31 E-value=0.047 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999886654
No 413
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.31 E-value=0.27 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 359999999999999999999653
No 414
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.30 E-value=0.13 Score=60.53 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...|+|+|..|.|||||++.+...
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999988543
No 415
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.0045 Score=61.27 Aligned_cols=80 Identities=29% Similarity=0.289 Sum_probs=62.0
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCc--cccCCCcccEeecCCCCCCccCCcc-----cc
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPN--SICELQSLQTLNLGDCLELEELPKD-----IR 628 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~-----~~ 628 (883)
..+|+.|++|.|+-|.|+++ ..+..|.+|+.|.|+.|. +..+.+ -+.++++|++|-|..|...+.-+.. +.
T Consensus 37 c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 46799999999999999988 467889999999999887 444432 3668999999999888777766543 34
Q ss_pred CCcccCEEE
Q 038265 629 YLVSLRMFV 637 (883)
Q Consensus 629 ~l~~L~~L~ 637 (883)
-|++|+.|+
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 566666664
No 416
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.1 Score=54.53 Aligned_cols=52 Identities=31% Similarity=0.321 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTS------DGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+++.|..+..+-|.+...-+- .+--...+-|..+|++|.|||-||++|+...
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 356677666666666543321 0122446789999999999999999998875
No 417
>PTZ00494 tuzin-like protein; Provisional
Probab=94.26 E-value=5.2 Score=43.44 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=91.9
Q ss_pred CccCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------CCCcHHHHHHHHHHHhh
Q 038265 160 FVRTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-------KDFGKRQIMTKIINSVI 232 (883)
Q Consensus 160 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------~~~~~~~~~~~i~~~~~ 232 (883)
+.....+|.|+++-..+...|..-. ...++|+++.|.-|.||++|.+....+. +--...+-+..+++.+.
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKALg 443 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRALG 443 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHhC
Confidence 3445678999988887777776532 3668999999999999999998877665 11223445556666654
Q ss_pred CCCCCC-CCh-HHHH---HHHHHHcCCCceEEEEeCCCCCCh-hhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccCC
Q 038265 233 GGNHGN-LDP-DRMQ---KVLRDSLNGKRYLLVMDDVWNEDP-RAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMRG 306 (883)
Q Consensus 233 ~~~~~~-~~~-~~~~---~~l~~~l~~kr~LlvlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~ 306 (883)
-..... -|. +=+. ..-+....++.=+||+-==...+. .-+.+.. .|.....-|.|++----+.+.......+.
T Consensus 444 V~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPR 522 (664)
T PTZ00494 444 VSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRR 522 (664)
T ss_pred CCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCcc
Confidence 322211 011 1111 112223445555666542111111 1111111 23333345778776554443322222223
Q ss_pred CCceecCCCChhcHHHHHHHHH
Q 038265 307 TTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 307 ~~~~~l~~L~~~~a~~lf~~~a 328 (883)
-..|.+..++..+|.++-.+..
T Consensus 523 LDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 523 LDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ceeEecCCcCHHHHHHHHhccc
Confidence 3578999999999988866654
No 418
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.25 E-value=0.31 Score=49.63 Aligned_cols=113 Identities=20% Similarity=0.202 Sum_probs=73.2
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---------CCCcHHHHHHHHHHHhh
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---------KDFGKRQIMTKIINSVI 232 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---------~~~~~~~~~~~i~~~~~ 232 (883)
..++|+|...-. ++..++.... ...+.+.|+|+.|+|||+-++.+++.. ..|....+...+.....
T Consensus 70 ~~~~~l~tkt~r-~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~i~~~~~ 144 (297)
T COG2842 70 LAPDFLETKTVR-RIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILIICAAAF 144 (297)
T ss_pred ccccccccchhH-hHhhhhhhhh----hcCceEEEeccccchhHHHHHhhcccCccceeecCChhhHHHHHHHHHHHHHh
Confidence 345677765533 3444443322 334489999999999999999999876 33444555555544443
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCC
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG 281 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~ 281 (883)
... .....+....+...+.+..-+++.|+.+.......+.+......
T Consensus 145 ~~~--~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 145 GAT--DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred ccc--chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 222 22334455566667788888999999988777778877765544
No 419
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.23 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..++|.++|+.|+||||.+..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999976653
No 420
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.25 E-value=0.12 Score=60.72 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...++|+|..|.|||||++.+...
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999999553
No 421
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.23 E-value=0.36 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||.+.+..-
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999653
No 422
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.22 E-value=0.03 Score=55.45 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 038265 193 VIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+|+|.|++|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 423
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.21 E-value=0.03 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 424
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.067 Score=54.23 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=41.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHH-HHHHHcCCCceEEEEeCCCC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQK-VLRDSLNGKRYLLVMDDVWN 266 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~l~~~l~~kr~LlvlDdv~~ 266 (883)
..++.++|||++|.|||-+|+.|+.....-...-.-.++...-.++ ...+++ +.+..-.-.++.|.+|+++.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE------saRlIRemf~yA~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE------SARLIRDMFRYAREVIPCIIFMDEIDA 236 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc------HHHHHHHHHHHHhhhCceEEeehhhhh
Confidence 4467999999999999999999988763211111111222111111 122222 22222234669999999853
No 425
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.19 E-value=0.16 Score=51.45 Aligned_cols=114 Identities=16% Similarity=0.254 Sum_probs=65.2
Q ss_pred ccccchhhHHHHHHHHhcC-CCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcH-HHHHHHHHHHhhCCCCCCCCh-
Q 038265 165 DIIGRYEDGEKIIELLMQT-SDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGK-RQIMTKIINSVIGGNHGNLDP- 241 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~- 241 (883)
.++|.--..+.|+..+..- .+..+.++-+++.+|..|+||...++.+.+..-.-+. ........... ........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~--hFP~~~~ie 160 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATL--HFPHASKIE 160 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhc--cCCChHHHH
Confidence 3556544444455444321 1234577889999999999999999888776521111 11122222111 11111122
Q ss_pred ---HHHHHHHHHHcC-CCceEEEEeCCCCCChhhHHHHHHhcC
Q 038265 242 ---DRMQKVLRDSLN-GKRYLLVMDDVWNEDPRAWGELKSLLL 280 (883)
Q Consensus 242 ---~~~~~~l~~~l~-~kr~LlvlDdv~~~~~~~~~~l~~~l~ 280 (883)
+++...++..++ -+|-|+|+|+++.....-.+.+.+.+.
T Consensus 161 ~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 161 DYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 233444444443 489999999998877766777777665
No 426
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.18 E-value=0.039 Score=53.82 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=53.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC-----CCCc-HH----HHHHHHHHHhhCCCCCC---CChHHHHHHHHHHcCC--Cce
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ-----KDFG-KR----QIMTKIINSVIGGNHGN---LDPDRMQKVLRDSLNG--KRY 257 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~-----~~~~-~~----~~~~~i~~~~~~~~~~~---~~~~~~~~~l~~~l~~--kr~ 257 (883)
++.|.|+.|.||||+.+.+.-.. ..+- .. ..+..++..+....... .....-...+...+.. ++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999885211 0000 00 00011111111000000 0111222233444433 889
Q ss_pred EEEEeCCCCC-ChhhHH----HHHHhcCCCCCCCEEEEeecChHHHHHHc
Q 038265 258 LLVMDDVWNE-DPRAWG----ELKSLLLGGAEGSKILVTTRSNKVALIMG 302 (883)
Q Consensus 258 LlvlDdv~~~-~~~~~~----~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 302 (883)
|+++|..-.. +..+-. .+...+.. ..++.+|++|.+.++...+.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 9999998432 221111 22222222 13678999999988776553
No 427
>PRK14528 adenylate kinase; Provisional
Probab=94.15 E-value=0.22 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999987654
No 428
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.15 E-value=0.024 Score=58.36 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.|.++|.+|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999887543
No 429
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.14 E-value=0.42 Score=54.28 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=40.6
Q ss_pred HHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcccCCCCceecCC
Q 038265 248 LRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGTMRGTTGYNLQE 314 (883)
Q Consensus 248 l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l~~ 314 (883)
+...+..+.=++|||.--+. |....+.+..++... +| .||+.|.++.......+ ..+.+.+
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va~----~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVAT----RIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhcc----eEEEEcC
Confidence 44555678889999976432 445556666666543 35 48889999888776654 5666654
No 430
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.14 E-value=0.051 Score=50.68 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 431
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.48 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999754
No 432
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.12 E-value=0.031 Score=56.10 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|||.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999888543
No 433
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.86 Score=51.81 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=82.4
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----CCcHHHHHHHHHHHhh
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQK----DFGKRQIMTKIINSVI 232 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~~~~~~~i~~~~~ 232 (883)
.++-|..+..+-+.+.+.-+.. ..-.-..-|.++|++|.|||.||-++..... ..-.-+++. ..+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~----KyI 742 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS----KYI 742 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH----HHh
Confidence 3556776666666666543321 0112234688999999999999999876641 011122222 222
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-----------hhhHHHHHHhcCC--CCCCCEEEEeecChHHHH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLLG--GAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~ 299 (883)
|. +++.......+.-.-+++.+.+|..++.. ..-..++...+.+ +-.|--|+-.|..++...
T Consensus 743 Ga-----SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 743 GA-----SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred cc-----cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccC
Confidence 22 23344445555556799999999986521 1223344444443 234555554443333332
Q ss_pred HHcccCC--CCceecCCCChhcHHHHHHHHH
Q 038265 300 IMGTMRG--TTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 300 ~~~~~~~--~~~~~l~~L~~~~a~~lf~~~a 328 (883)
..-..+| ++.+.-+..++.|-+++|...+
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 2111111 1233334455666677777665
No 434
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.11 E-value=0.32 Score=51.99 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=43.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC------------CCCcH--HHHHHHHHHHhhCCCCCCCChHHHHHHHHHHc-C
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ------------KDFGK--RQIMTKIINSVIGGNHGNLDPDRMQKVLRDSL-N 253 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~------------~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l-~ 253 (883)
.+.++++++|+.|+||||++..+.... +.|.. ..-+......+.-......+..++...+...- .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 446899999999999999997775432 33322 22233322222111112335555555554332 1
Q ss_pred CCceEEEEeCCCC
Q 038265 254 GKRYLLVMDDVWN 266 (883)
Q Consensus 254 ~kr~LlvlDdv~~ 266 (883)
+..=+|++|-.-.
T Consensus 284 ~~~D~VLIDTAGr 296 (407)
T PRK12726 284 NCVDHILIDTVGR 296 (407)
T ss_pred CCCCEEEEECCCC
Confidence 3456888898744
No 435
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.11 E-value=0.41 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|+.|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999654
No 436
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.10 E-value=0.14 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....++.|+|.+|+|||++|.++..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567999999999999999988764
No 437
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.08 E-value=0.12 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+++.|+|++|+|||++|.++..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV 34 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5568999999999999999987754
No 438
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.08 E-value=0.17 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
..++++++|+.|+||||++..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999996664
No 439
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.07 E-value=0.11 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
+...++.|+|.+|+|||++|.++.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHH
Confidence 556799999999999999998874
No 440
>PRK13409 putative ATPase RIL; Provisional
Probab=94.03 E-value=0.35 Score=56.30 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=61.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC-----------------C------CCcHHHHH-------------HHHHHHhh--
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ-----------------K------DFGKRQIM-------------TKIINSVI-- 232 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~-----------------~------~~~~~~~~-------------~~i~~~~~-- 232 (883)
..+++|+|+.|+|||||++.+.... + ..+..+.+ .+++..+.
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 3589999999999999999997542 0 01111111 11111110
Q ss_pred ---CCCCCCCChHHHHHH-HHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCC--CCCCEEEEeecChHHHHHH
Q 038265 233 ---GGNHGNLDPDRMQKV-LRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG--AEGSKILVTTRSNKVALIM 301 (883)
Q Consensus 233 ---~~~~~~~~~~~~~~~-l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~ 301 (883)
.......+..+.+.. +...+..+.=+++||.--. .|...-..+...+... ..|..||++|.+...+...
T Consensus 445 ~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 445 RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 111122333443333 4456677788999997632 2333333444444321 2356788888887766544
No 441
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.43 Score=47.71 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|..|.|||||.+.+...
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999653
No 442
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.03 E-value=0.55 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.+...
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999653
No 443
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.02 E-value=0.39 Score=56.59 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...++|+|..|.|||||++.+..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999988854
No 444
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.02 E-value=0.6 Score=48.38 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|.|+.|.|||||++.+...
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 445
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.01 E-value=0.3 Score=52.79 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999653
No 446
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.01 E-value=0.13 Score=51.94 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=52.8
Q ss_pred HHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhc-ccCChHHHHHHHHHHhhhcchhhhhhhh
Q 038265 11 LLEKLGSFAYEELLLFCGVKNDLEKLKETLTTVKSVVLDAEEK-QVHSHQLRDWLEKLKDACYDAEDALDEF 81 (883)
Q Consensus 11 ~~~kl~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~-~~~~~~v~~wl~~l~~~~~d~ed~ld~~ 81 (883)
++.++-..-......+.-++.+++-++.+++.+|.||+..... ..+-........++-+.||++|++||.|
T Consensus 301 lL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 301 LLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 4444444433333344457899999999999999999986443 4333348899999999999999999987
No 447
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.99 E-value=0.042 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999986654
No 448
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.97 E-value=0.46 Score=52.69 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLV 211 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v 211 (883)
.++++++|++|+||||++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 469999999999999987554
No 449
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.95 E-value=0.12 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 038265 194 IPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~~ 215 (883)
|.|.|++|+||||+|+.+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999997764
No 450
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.91 E-value=0.063 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+.|.+.|.+|+||||+|+++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 36788999999999999988654
No 451
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.89 E-value=0.23 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999998653
No 452
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.88 E-value=0.042 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998764
No 453
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=93.88 E-value=0.18 Score=60.52 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...++|+|..|.|||||++.+...
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999654
No 454
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.87 E-value=0.16 Score=60.23 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+.++|....+.++.+.+.... ....-|.|+|..|+||+++|+++++..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 568999999988888776532 222347899999999999999998754
No 455
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.87 E-value=0.043 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...|.++|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998865
No 456
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.87 E-value=0.2 Score=60.47 Aligned_cols=24 Identities=46% Similarity=0.574 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...|+|+|..|.|||||++.+..-
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998543
No 457
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.85 E-value=0.16 Score=58.18 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=37.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++++|....+.++.+.+.... ..-.-|.|+|..|+||+++|++++...
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHHhC
Confidence 3579999998888888775422 112348899999999999999987653
No 458
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.84 E-value=0.053 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999988765
No 459
>PRK02496 adk adenylate kinase; Provisional
Probab=93.84 E-value=0.16 Score=49.45 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=41.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHHH----------hhCCCCCCCChHHHHHHHHHHcCC--CceE
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIINS----------VIGGNHGNLDPDRMQKVLRDSLNG--KRYL 258 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~~~~l~~~l~~--kr~L 258 (883)
.+.|.|++|+||||+|+.+.... ...+...++...+.. ... .......+.....+.+.+.. .+--
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMD-KGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHH-CCCccCHHHHHHHHHHHHhCcCccCC
Confidence 47889999999999999987654 233333444332211 110 01122233444556666543 2234
Q ss_pred EEEeCCCC
Q 038265 259 LVMDDVWN 266 (883)
Q Consensus 259 lvlDdv~~ 266 (883)
+|||+...
T Consensus 82 ~vldGfPr 89 (184)
T PRK02496 82 WILDGFPR 89 (184)
T ss_pred EEEeCCCC
Confidence 78899854
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.83 E-value=0.04 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999987764
No 461
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.47 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+++++|++|+||||++..+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999977754
No 462
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.80 E-value=0.42 Score=57.69 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...|+|+|..|.|||||++.+..-
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999543
No 463
>PRK06217 hypothetical protein; Validated
Probab=93.80 E-value=0.044 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.|.|.|++|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 464
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.78 E-value=0.2 Score=58.64 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...++|+|+.|.|||||++.+....
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999996543
No 465
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.77 E-value=0.2 Score=55.97 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+|+|+|++|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999977653
No 466
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.054 Score=49.76 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|+|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999997775544
No 467
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.76 E-value=0.47 Score=47.75 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|+.|.|||||++.+...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999654
No 468
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.75 E-value=0.056 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 038265 194 IPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~~ 215 (883)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 469
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.74 E-value=0.36 Score=46.49 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999777554
No 470
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.73 E-value=0.048 Score=54.53 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 038265 192 SVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~ 212 (883)
++++|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 799999999999999999884
No 471
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.73 E-value=0.044 Score=53.05 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888654
No 472
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.73 E-value=0.051 Score=52.84 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 489999999999999999998864
No 473
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.72 E-value=0.13 Score=49.50 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC---------------C-CCcHHHHHHHHHHHh----hCCC--CCCCChH------
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ---------------K-DFGKRQIMTKIINSV----IGGN--HGNLDPD------ 242 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~---------------~-~~~~~~~~~~i~~~~----~~~~--~~~~~~~------ 242 (883)
...|-|+|..|-||||.|..+.-+. . ..+....+..+- .+ .+.. +...+.+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHHH
Confidence 3589999999999999996664433 1 233334443310 11 1111 1111111
Q ss_pred -HHHHHHHHHcCCCc-eEEEEeCCCC---CChhhHHHHHHhcCCCCCCCEEEEeecChH
Q 038265 243 -RMQKVLRDSLNGKR-YLLVMDDVWN---EDPRAWGELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 243 -~~~~~l~~~l~~kr-~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
..-+..++.+...+ =|+|||.+-. ......+++...+....++.-||+|-|+..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233344554444 4999998732 233445677777777777889999999853
No 474
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.70 E-value=0.084 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLV 211 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v 211 (883)
....+|||.|..|+||||+|+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARIL 82 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999765
No 475
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.68 E-value=0.42 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 038265 194 IPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 194 v~I~G~gGiGKTtLa~~v~~~~ 215 (883)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 476
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=93.66 E-value=0.25 Score=59.40 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....++|+|+.|.|||||++.+..-
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999988654
No 477
>PRK05439 pantothenate kinase; Provisional
Probab=93.66 E-value=0.091 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+|||.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999987754
No 478
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.65 E-value=0.095 Score=50.97 Aligned_cols=44 Identities=27% Similarity=0.274 Sum_probs=31.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+++|-+..+..+.-.... .+-+.++|++|+|||++|+.+..-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 5688988777766655533 3578999999999999999996544
No 479
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.65 E-value=0.44 Score=47.15 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC----------------CCCcHHHHHHH-H--------------HHHhhCCCCCCC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ----------------KDFGKRQIMTK-I--------------INSVIGGNHGNL 239 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~----------------~~~~~~~~~~~-i--------------~~~~~~~~~~~~ 239 (883)
..+++|+|..|.|||||.+.+.... ...+....... + ..+.........
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~L 105 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGF 105 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhccccC
Confidence 4599999999999999999987751 01111111000 0 000000011122
Q ss_pred ChHHHHH-HHHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCC-CCCCEEEEeecChHHHH
Q 038265 240 DPDRMQK-VLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG-AEGSKILVTTRSNKVAL 299 (883)
Q Consensus 240 ~~~~~~~-~l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 299 (883)
+..+.++ .+...+..++=++++|+.-. .|....+.+...+... ..|..||++|.+.....
T Consensus 106 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 3333222 24455666778999998743 2333344444444321 23667889998877654
No 480
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.64 E-value=0.39 Score=49.99 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 358999999999999999998643
No 481
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.64 E-value=0.31 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||.+.+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999643
No 482
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.55 Score=49.18 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|.|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 33 GEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999754
No 483
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.63 E-value=0.27 Score=57.67 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...++|+|+.|.|||||++.+..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999998854
No 484
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.62 E-value=0.11 Score=54.91 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+.-+++-|+|++|+||||||.+++.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~ 77 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA 77 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5568999999999999999987653
No 485
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.62 E-value=0.1 Score=52.18 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=26.4
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 172 DGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...++++.+.... .+..+|||.|+||+|||||.-++..
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHH
Confidence 3445666665422 4568999999999999999977644
No 486
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.61 E-value=0.69 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|.|..|.|||||.+.+...
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 487
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.59 E-value=0.63 Score=48.14 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 488
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.53 Score=47.34 Aligned_cols=97 Identities=21% Similarity=0.188 Sum_probs=60.7
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (883)
.++=|-+..+++|.+...-+-+ .+-...+-|.++|.+|.|||-||++|+|+...-..+-+-.++++.-.++..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGp 264 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 264 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccch
Confidence 4566888888888887643321 122446778899999999999999999987443344444444444443321
Q ss_pred CCCChHHHHHHHHHHc-CCCceEEEEeCCCC
Q 038265 237 GNLDPDRMQKVLRDSL-NGKRYLLVMDDVWN 266 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~ 266 (883)
.+...+.+.. ..-.-.+++|.++-
T Consensus 265 ------klvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 265 ------KLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred ------HHHHHHHHHHHhcCCceEEeehhhh
Confidence 2333333222 34567788887753
No 489
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.58 E-value=0.072 Score=50.59 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....+++|+|..|+|||||++.+...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 34679999999999999999888643
No 490
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=93.57 E-value=0.075 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-.-++|.|.+|+|||||++.+++..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i 93 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNI 93 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHH
Confidence 4578999999999999999988764
No 491
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.53 E-value=0.85 Score=48.37 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=33.8
Q ss_pred ceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 309 GYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 309 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
++++++++.+|+..++.-++-..-...........+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999888743322211233345567777779998643
No 492
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.51 E-value=0.65 Score=48.80 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|..|.|||||++.+..-
T Consensus 32 Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 32 GEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 359999999999999999999654
No 493
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=93.49 E-value=0.3 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...++|+|+.|.|||||++.+...
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999654
No 494
>PRK14531 adenylate kinase; Provisional
Probab=93.48 E-value=0.19 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.|.|.|++|+||||+++.+....
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997765
No 495
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.47 E-value=1.2 Score=41.33 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=35.0
Q ss_pred HHHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcC--CCCCCCEEEEeecChHHHHHHc
Q 038265 247 VLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLL--GGAEGSKILVTTRSNKVALIMG 302 (883)
Q Consensus 247 ~l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~~ 302 (883)
.+.+.+..++-+++-|.--. -|...-+++...+. +...|+..|+.|.++.++..|.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhh
Confidence 35566777777888885421 12222233433332 3456888999999999998775
No 496
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=93.46 E-value=0.5 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...++|+|..|.|||||++.+..-
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998543
No 497
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.34 Score=55.44 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=61.1
Q ss_pred CccCCccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--CCcHHHHHHHHHHHh
Q 038265 160 FVRTSDIIGRYEDGEKIIELLMQTSD------GESETVSVIPIVGIGGLGKTALAKLVYNDQK--DFGKRQIMTKIINSV 231 (883)
Q Consensus 160 ~~~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~~~~~~~i~~~~ 231 (883)
.+.=+++=|-++-..+|.+-+.-+-. .+-....=|.++|++|.|||-+|++|+.... -+++. =.+++..-
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVK--GPELLNMY 745 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK--GPELLNMY 745 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeec--CHHHHHHH
Confidence 33345677888888888876543210 1112245788999999999999999977641 01000 01122222
Q ss_pred hCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCC
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWN 266 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 266 (883)
.| .+++.+.+...+.-..++++|.+|.+++
T Consensus 746 VG-----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 746 VG-----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred hc-----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22 2344455555666667999999999976
No 498
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.44 E-value=0.5 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|..|.|||||++.+..-
T Consensus 41 Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 41 GKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 359999999999999999999654
No 499
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.42 E-value=0.077 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|||+|+.|+||||.|+.+-+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~ 25 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL 25 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc
Confidence 358999999999999999999774
No 500
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.41 E-value=0.48 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
...+|.++|.+|+||||+|..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999997765
Done!