Query 038265
Match_columns 883
No_of_seqs 587 out of 4958
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-41 4.6E-46 391.6 21.8 302 167-496 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-33 5E-38 361.2 26.1 300 159-495 119-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.6E-33 5.4E-38 325.6 22.8 270 165-488 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.5E-30 8.5E-35 302.9 22.5 292 162-492 122-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 4.3E-26 1.5E-30 274.6 18.6 264 559-824 393-717 (768)
6 2id5_A Lingo-1, leucine rich r 99.9 1.5E-24 5.2E-29 247.2 24.9 300 534-855 33-335 (477)
7 4eco_A Uncharacterized protein 99.9 5.9E-25 2E-29 258.5 22.0 335 509-862 250-609 (636)
8 4ecn_A Leucine-rich repeat pro 99.9 7E-25 2.4E-29 261.8 21.8 160 552-714 440-631 (876)
9 3v47_A TOLL-like receptor 5B a 99.9 6.6E-25 2.3E-29 248.7 20.1 331 506-857 28-412 (455)
10 4eco_A Uncharacterized protein 99.9 4.5E-25 1.5E-29 259.5 18.9 330 509-858 207-584 (636)
11 3rgz_A Protein brassinosteroid 99.9 3.9E-25 1.3E-29 266.3 18.0 314 526-857 311-721 (768)
12 4ecn_A Leucine-rich repeat pro 99.9 3.6E-24 1.2E-28 255.7 23.9 322 525-863 481-850 (876)
13 2id5_A Lingo-1, leucine rich r 99.9 4.4E-24 1.5E-28 243.3 21.7 304 504-824 28-333 (477)
14 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-24 3.6E-29 233.0 13.0 252 533-825 50-305 (313)
15 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-23 7.5E-28 240.4 23.6 325 505-856 18-484 (520)
16 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-23 5.3E-28 246.6 22.6 338 505-857 29-514 (606)
17 3t6q_A CD180 antigen; protein- 99.9 1.5E-23 5.1E-28 246.7 22.4 302 534-857 255-564 (606)
18 4fmz_A Internalin; leucine ric 99.9 2.4E-23 8.1E-28 226.8 21.4 302 509-853 45-346 (347)
19 4fcg_A Uncharacterized protein 99.9 7.8E-24 2.7E-28 227.6 16.5 222 559-821 80-311 (328)
20 3t6q_A CD180 antigen; protein- 99.9 3.1E-23 1.1E-27 244.0 23.1 220 627-857 274-517 (606)
21 3v47_A TOLL-like receptor 5B a 99.9 2E-23 6.7E-28 236.6 19.2 316 533-858 30-389 (455)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.1E-23 2.8E-27 237.7 24.6 325 505-856 49-513 (562)
23 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-22 5.9E-27 245.9 26.8 301 506-822 22-373 (844)
24 2z63_A TOLL-like receptor 4, v 99.9 8.4E-23 2.9E-27 238.6 22.9 176 675-857 344-535 (570)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-22 4E-27 234.3 22.9 315 533-858 21-462 (520)
26 4fcg_A Uncharacterized protein 99.9 5E-23 1.7E-27 221.3 16.8 230 582-857 80-318 (328)
27 1ogq_A PGIP-2, polygalacturona 99.9 3.5E-23 1.2E-27 221.2 14.8 255 508-804 50-308 (313)
28 3o6n_A APL1; leucine-rich repe 99.9 2E-22 6.8E-27 223.1 20.3 304 531-858 43-357 (390)
29 4fmz_A Internalin; leucine ric 99.9 3.7E-22 1.3E-26 217.4 22.0 279 508-822 66-344 (347)
30 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-22 5.7E-27 234.9 19.7 135 506-644 24-161 (549)
31 1xku_A Decorin; proteoglycan, 99.9 8.3E-22 2.8E-26 212.8 23.8 273 561-855 32-308 (330)
32 3oja_B Anopheles plasmodium-re 99.9 2.6E-22 8.8E-27 234.7 21.0 271 554-856 69-361 (597)
33 3vq2_A TLR4, TOLL-like recepto 99.9 2.5E-22 8.6E-27 236.3 20.3 276 556-857 281-562 (606)
34 1ziw_A TOLL-like receptor 3; i 99.9 7.1E-22 2.4E-26 235.7 23.5 161 504-668 21-185 (680)
35 2ft3_A Biglycan; proteoglycan, 99.9 9.6E-22 3.3E-26 212.4 20.7 239 561-822 34-275 (332)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-21 8.1E-26 225.3 25.3 126 533-666 52-181 (562)
37 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-21 9.9E-26 217.0 24.2 294 509-856 43-355 (457)
38 1o6v_A Internalin A; bacterial 99.9 2.7E-21 9.1E-26 219.2 22.5 313 508-856 68-391 (466)
39 3o6n_A APL1; leucine-rich repe 99.9 1.9E-21 6.4E-26 215.3 20.3 290 508-826 45-354 (390)
40 3j0a_A TOLL-like receptor 5; m 99.9 3.8E-21 1.3E-25 234.0 24.8 316 532-857 23-379 (844)
41 3oja_B Anopheles plasmodium-re 99.9 1.5E-21 5E-26 228.3 19.5 286 558-857 49-341 (597)
42 3zyi_A Leucine-rich repeat-con 99.9 6E-21 2E-25 215.4 23.4 245 562-823 56-302 (452)
43 1o6v_A Internalin A; bacterial 99.9 8.1E-21 2.8E-25 215.3 23.7 278 508-824 90-388 (466)
44 2z63_A TOLL-like receptor 4, v 99.9 2.8E-21 9.6E-26 225.7 19.8 170 652-824 345-531 (570)
45 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-21 7.4E-26 218.0 17.9 279 508-822 64-350 (457)
46 3zyj_A Leucine-rich repeat-con 99.9 1E-20 3.4E-25 212.8 23.3 244 562-823 45-291 (440)
47 1ziw_A TOLL-like receptor 3; i 99.9 6.6E-21 2.2E-25 227.4 23.1 259 533-797 25-306 (680)
48 2ft3_A Biglycan; proteoglycan, 99.9 6.1E-21 2.1E-25 206.1 19.3 172 533-714 54-229 (332)
49 1xku_A Decorin; proteoglycan, 99.9 1.1E-20 3.8E-25 203.9 20.5 269 533-851 52-330 (330)
50 2z81_A CD282 antigen, TOLL-lik 99.9 2E-21 6.9E-26 225.7 15.6 177 533-713 26-207 (549)
51 2z66_A Variable lymphocyte rec 99.8 1.6E-20 5.5E-25 200.4 18.7 225 560-823 28-260 (306)
52 4g8a_A TOLL-like receptor 4; l 99.8 7.4E-20 2.5E-24 216.7 25.8 342 504-856 48-583 (635)
53 2z80_A TOLL-like receptor 2, v 99.8 5.2E-21 1.8E-25 208.5 14.3 250 560-823 52-313 (353)
54 1ozn_A Reticulon 4 receptor; N 99.8 4.4E-20 1.5E-24 194.7 17.8 224 562-824 13-238 (285)
55 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-21 1.1E-25 206.5 8.4 254 547-826 21-277 (317)
56 1jl5_A Outer protein YOPM; leu 99.8 5.9E-19 2E-23 198.0 24.4 331 506-881 89-438 (454)
57 1wwl_A Monocyte differentiatio 99.8 5.9E-21 2E-25 204.0 6.8 155 556-713 39-212 (312)
58 4g8a_A TOLL-like receptor 4; l 99.8 3.1E-19 1.1E-23 211.4 21.7 315 533-858 52-560 (635)
59 2z66_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 191.1 17.7 227 533-801 28-262 (306)
60 3zyi_A Leucine-rich repeat-con 99.8 7.9E-19 2.7E-23 198.0 22.7 252 584-857 55-307 (452)
61 3zyj_A Leucine-rich repeat-con 99.8 9.7E-19 3.3E-23 196.6 23.1 252 584-857 44-296 (440)
62 2z80_A TOLL-like receptor 2, v 99.8 7.9E-20 2.7E-24 199.2 13.7 279 557-857 28-318 (353)
63 3oja_A Leucine-rich immune mol 99.8 3.2E-20 1.1E-24 210.5 10.8 238 556-819 30-270 (487)
64 1ozn_A Reticulon 4 receptor; N 99.8 3E-19 1E-23 188.3 14.5 249 559-821 31-284 (285)
65 1z7x_W Ribonuclease inhibitor; 99.8 2E-21 6.9E-26 220.5 -3.8 207 507-713 2-238 (461)
66 3g06_A SSPH2 (leucine-rich rep 99.8 3.5E-18 1.2E-22 197.5 21.7 262 534-858 41-302 (622)
67 3g06_A SSPH2 (leucine-rich rep 99.8 7.3E-18 2.5E-22 194.9 23.9 237 533-824 61-297 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-19 6.6E-24 192.7 9.9 269 527-824 28-299 (317)
69 3oja_A Leucine-rich immune mol 99.8 8E-19 2.7E-23 199.0 14.0 219 581-824 32-250 (487)
70 1wwl_A Monocyte differentiatio 99.8 3.7E-19 1.3E-23 190.0 8.8 219 562-822 65-307 (312)
71 1p9a_G Platelet glycoprotein I 99.8 1E-17 3.5E-22 176.3 18.9 153 556-712 6-158 (290)
72 1jl5_A Outer protein YOPM; leu 99.8 1.4E-17 4.8E-22 186.8 21.1 281 533-855 131-431 (454)
73 2z62_A TOLL-like receptor 4, v 99.8 7.2E-18 2.5E-22 176.8 16.8 147 565-713 12-160 (276)
74 1p9a_G Platelet glycoprotein I 99.8 1.8E-17 6E-22 174.5 18.9 203 578-824 5-208 (290)
75 2z62_A TOLL-like receptor 4, v 99.8 6.3E-18 2.2E-22 177.2 15.4 203 560-800 28-237 (276)
76 3rfs_A Internalin B, repeat mo 99.8 1.1E-17 3.6E-22 174.8 17.1 211 556-813 37-248 (272)
77 1z7x_W Ribonuclease inhibitor; 99.7 2.6E-20 8.8E-25 211.3 -4.0 336 509-856 29-414 (461)
78 2o6q_A Variable lymphocyte rec 99.7 4.8E-17 1.7E-21 169.7 19.7 150 560-712 16-167 (270)
79 2o6q_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 169.2 19.7 200 584-823 17-217 (270)
80 2ast_B S-phase kinase-associat 99.7 4E-19 1.4E-23 192.4 2.4 153 560-712 70-232 (336)
81 2xwt_C Thyrotropin receptor; s 99.7 3.4E-17 1.2E-21 167.5 14.3 205 572-823 23-238 (239)
82 3rfs_A Internalin B, repeat mo 99.7 4E-17 1.4E-21 170.4 15.0 177 531-713 39-216 (272)
83 2ast_B S-phase kinase-associat 99.7 4.5E-18 1.5E-22 184.1 7.3 177 533-713 70-258 (336)
84 3ogk_B Coronatine-insensitive 99.7 7.9E-19 2.7E-23 205.9 0.6 287 553-857 213-530 (592)
85 1h6u_A Internalin H; cell adhe 99.7 9.4E-17 3.2E-21 170.7 15.9 192 557-799 38-229 (308)
86 3qfl_A MLA10; coiled-coil, (CC 99.7 3.9E-18 1.3E-22 149.1 3.0 78 9-86 4-83 (115)
87 3ogk_B Coronatine-insensitive 99.7 1.8E-18 6.2E-23 202.8 1.1 333 509-857 139-505 (592)
88 2xwt_C Thyrotropin receptor; s 99.7 1.3E-16 4.5E-21 163.1 14.8 199 560-799 31-238 (239)
89 2ca6_A RAN GTPase-activating p 99.7 6.8E-19 2.3E-23 194.3 -2.7 163 551-713 23-227 (386)
90 4glp_A Monocyte differentiatio 99.7 1.4E-16 4.9E-21 169.8 15.3 137 559-696 90-242 (310)
91 4ay9_X Follicle-stimulating ho 99.7 5.9E-16 2E-20 167.9 18.6 238 563-820 12-255 (350)
92 2ca6_A RAN GTPase-activating p 99.7 3.3E-18 1.1E-22 188.8 -0.0 245 527-802 26-318 (386)
93 4glp_A Monocyte differentiatio 99.7 1.5E-16 5.1E-21 169.6 11.9 128 561-689 65-208 (310)
94 1h6u_A Internalin H; cell adhe 99.7 6.7E-16 2.3E-20 164.1 14.7 193 579-823 37-229 (308)
95 3goz_A Leucine-rich repeat-con 99.6 3.9E-17 1.3E-21 178.2 3.0 240 551-822 13-295 (362)
96 3m19_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 152.9 17.2 152 560-713 14-166 (251)
97 4ay9_X Follicle-stimulating ho 99.6 8.1E-15 2.8E-19 159.0 17.8 245 579-849 6-255 (350)
98 2p1m_B Transport inhibitor res 99.6 1.3E-17 4.3E-22 195.7 -4.7 89 761-854 430-520 (594)
99 3goz_A Leucine-rich repeat-con 99.6 6.5E-17 2.2E-21 176.5 -0.2 260 564-856 2-300 (362)
100 3cvr_A Invasion plasmid antige 99.6 3.7E-15 1.3E-19 170.0 14.0 134 559-713 58-191 (571)
101 2p1m_B Transport inhibitor res 99.6 4.3E-17 1.5E-21 191.2 -2.8 332 509-857 106-498 (594)
102 3m19_A Variable lymphocyte rec 99.6 2E-14 6.7E-19 148.0 17.4 125 584-711 15-140 (251)
103 2o6s_A Variable lymphocyte rec 99.6 8.3E-15 2.9E-19 146.1 13.8 124 563-688 10-134 (208)
104 4ezg_A Putative uncharacterize 99.6 4.9E-15 1.7E-19 146.3 11.1 151 557-713 41-192 (197)
105 1h6t_A Internalin B; cell adhe 99.6 1.8E-14 6.3E-19 151.5 13.6 145 558-712 44-188 (291)
106 1m9s_A Internalin B; cell inva 99.5 1.2E-14 4.3E-19 167.7 11.6 146 557-712 40-185 (605)
107 2v9t_B SLIT homolog 2 protein 99.5 5.3E-14 1.8E-18 141.3 14.8 149 563-713 14-163 (220)
108 1m9s_A Internalin B; cell inva 99.5 3.4E-14 1.2E-18 164.1 14.8 147 556-712 61-207 (605)
109 1w5s_A Origin recognition comp 99.5 7.9E-14 2.7E-18 155.2 16.2 290 163-467 21-372 (412)
110 1dce_A Protein (RAB geranylger 99.5 1.5E-16 5.1E-21 182.7 -6.6 203 557-818 346-567 (567)
111 3cvr_A Invasion plasmid antige 99.5 8.4E-14 2.9E-18 158.8 15.7 185 583-807 59-250 (571)
112 1h6t_A Internalin B; cell adhe 99.5 1E-13 3.5E-18 145.8 15.0 169 531-714 44-212 (291)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.5E-18 138.4 14.6 150 562-713 13-164 (220)
114 2o6s_A Variable lymphocyte rec 99.5 2.1E-13 7E-18 136.0 15.5 180 586-812 10-190 (208)
115 4ezg_A Putative uncharacterize 99.5 8.8E-14 3E-18 137.2 12.0 152 628-822 41-192 (197)
116 2qen_A Walker-type ATPase; unk 99.5 2E-12 7E-17 140.3 24.0 286 162-488 10-348 (350)
117 3e6j_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 137.9 14.8 148 562-713 21-170 (229)
118 2fna_A Conserved hypothetical 99.5 2.5E-12 8.5E-17 140.0 21.4 284 162-487 11-355 (357)
119 1xeu_A Internalin C; cellular 99.4 7.4E-13 2.5E-17 136.9 13.1 147 556-713 37-183 (263)
120 2xot_A Amphoterin-induced prot 99.4 8.6E-13 2.9E-17 143.6 13.8 150 563-715 21-176 (361)
121 2v9t_B SLIT homolog 2 protein 99.4 2.1E-12 7.1E-17 129.6 14.4 61 762-822 103-163 (220)
122 1xeu_A Internalin C; cellular 99.4 1.5E-13 5E-18 142.2 5.7 145 558-713 17-161 (263)
123 3e6j_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 131.7 12.5 132 560-692 40-173 (229)
124 2ell_A Acidic leucine-rich nuc 99.4 6.1E-13 2.1E-17 127.5 9.1 129 558-689 22-158 (168)
125 2xot_A Amphoterin-induced prot 99.4 1.4E-12 4.8E-17 141.9 12.3 128 585-715 20-149 (361)
126 2v70_A SLIT-2, SLIT homolog 2 99.4 2E-12 6.8E-17 129.7 12.3 132 560-691 32-166 (220)
127 2je0_A Acidic leucine-rich nuc 99.4 6.8E-13 2.3E-17 124.3 7.4 126 558-686 15-148 (149)
128 1w8a_A SLIT protein; signaling 99.3 5.2E-12 1.8E-16 123.7 12.3 126 563-691 11-139 (192)
129 4b8c_D Glucose-repressible alc 99.3 5.9E-13 2E-17 157.8 6.5 144 551-696 215-359 (727)
130 4b8c_D Glucose-repressible alc 99.3 3.6E-13 1.2E-17 159.7 4.7 124 572-698 213-336 (727)
131 2ell_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 121.9 9.0 133 581-716 22-161 (168)
132 2wfh_A SLIT homolog 2 protein 99.3 1.7E-11 5.9E-16 120.0 12.4 124 563-689 13-137 (193)
133 2je0_A Acidic leucine-rich nuc 99.3 3.5E-12 1.2E-16 119.4 6.2 127 581-710 15-148 (149)
134 1a9n_A U2A', U2A'; complex (nu 99.3 8.2E-12 2.8E-16 120.5 8.6 129 556-689 15-151 (176)
135 1njg_A DNA polymerase III subu 99.2 2E-11 6.7E-16 125.1 11.5 190 164-364 23-231 (250)
136 1dce_A Protein (RAB geranylger 99.2 2.3E-12 7.9E-17 147.9 3.7 176 530-714 346-545 (567)
137 2qby_B CDC6 homolog 3, cell di 99.2 5.6E-10 1.9E-14 122.6 22.0 282 163-467 19-340 (384)
138 1fnn_A CDC6P, cell division co 99.2 7.7E-10 2.6E-14 121.8 23.0 288 163-467 16-352 (389)
139 1w8a_A SLIT protein; signaling 99.2 5.3E-11 1.8E-15 116.5 11.8 125 586-713 11-137 (192)
140 2v1u_A Cell division control p 99.2 8.8E-10 3E-14 121.2 22.9 284 163-466 18-351 (387)
141 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 112.8 12.0 128 562-692 9-138 (177)
142 3sb4_A Hypothetical leucine ri 99.2 1.2E-10 4.2E-15 124.8 13.1 236 559-817 48-327 (329)
143 1a9n_A U2A', U2A'; complex (nu 99.2 3.6E-11 1.2E-15 116.0 7.9 130 578-713 14-151 (176)
144 2wfh_A SLIT homolog 2 protein 99.1 2.3E-10 7.8E-15 111.9 12.4 124 586-713 13-137 (193)
145 1ds9_A Outer arm dynein; leuci 99.1 1.4E-12 4.8E-17 128.7 -5.5 108 578-690 43-152 (198)
146 1ds9_A Outer arm dynein; leuci 99.1 3.8E-12 1.3E-16 125.5 -3.6 128 553-684 41-180 (198)
147 2chg_A Replication factor C sm 99.1 1.4E-09 4.9E-14 109.3 15.2 183 163-363 16-206 (226)
148 2o6r_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 105.6 12.6 126 584-713 8-135 (177)
149 2qby_A CDC6 homolog 1, cell di 99.0 2E-09 6.9E-14 118.3 14.4 287 162-466 18-348 (386)
150 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 104.0 10.2 103 561-665 10-113 (170)
151 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.9E-14 104.2 10.2 101 562-665 14-116 (174)
152 4fdw_A Leucine rich hypothetic 99.0 2.4E-08 8.1E-13 109.3 20.7 266 533-855 113-385 (401)
153 1hqc_A RUVB; extended AAA-ATPa 99.0 2.1E-09 7.2E-14 114.9 11.4 270 163-464 11-323 (324)
154 1sxj_B Activator 1 37 kDa subu 98.9 6.8E-09 2.3E-13 110.9 14.3 182 164-362 21-211 (323)
155 3sb4_A Hypothetical leucine ri 98.9 2.2E-09 7.4E-14 115.0 8.9 273 559-858 24-315 (329)
156 4fdw_A Leucine rich hypothetic 98.8 5.5E-08 1.9E-12 106.4 17.2 240 528-821 131-380 (401)
157 2r9u_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 98.2 9.9 101 585-689 14-116 (174)
158 3g39_A Variable lymphocyte rec 98.8 1.1E-08 3.9E-13 97.5 9.8 104 584-690 10-114 (170)
159 1iqp_A RFCS; clamp loader, ext 98.7 4.2E-08 1.4E-12 104.9 11.0 185 163-364 24-215 (327)
160 1jr3_A DNA polymerase III subu 98.7 1.3E-07 4.4E-12 103.2 13.9 189 164-362 16-222 (373)
161 2ifg_A High affinity nerve gro 98.7 4.5E-08 1.5E-12 105.6 9.9 101 564-666 12-115 (347)
162 3un9_A NLR family member X1; l 98.6 4E-09 1.4E-13 114.3 -0.1 155 559-713 71-250 (372)
163 3un9_A NLR family member X1; l 98.6 1E-08 3.5E-13 111.0 2.7 159 533-691 72-252 (372)
164 2chq_A Replication factor C sm 98.5 3.4E-07 1.2E-11 97.4 12.5 183 164-361 17-204 (319)
165 2ra8_A Uncharacterized protein 98.5 1.7E-08 5.8E-13 108.3 2.0 57 651-710 169-227 (362)
166 2ra8_A Uncharacterized protein 98.5 1.2E-07 3.9E-12 101.8 6.6 154 556-712 135-317 (362)
167 4fs7_A Uncharacterized protein 98.4 5.2E-06 1.8E-10 91.0 19.0 128 527-662 65-193 (394)
168 3te6_A Regulatory protein SIR3 98.4 1.1E-06 3.8E-11 91.3 12.4 157 165-329 21-212 (318)
169 2ifg_A High affinity nerve gro 98.4 6.2E-07 2.1E-11 96.6 10.1 101 587-690 12-115 (347)
170 1sxj_E Activator 1 40 kDa subu 98.4 1.8E-06 6E-11 93.3 12.8 189 164-362 14-238 (354)
171 1sxj_A Activator 1 95 kDa subu 98.4 1.5E-06 5.2E-11 98.5 12.8 191 163-360 38-252 (516)
172 1sxj_D Activator 1 41 kDa subu 98.4 4.5E-06 1.5E-10 90.1 15.8 181 163-361 36-235 (353)
173 3pfi_A Holliday junction ATP-d 98.3 3.4E-06 1.2E-10 90.4 13.9 181 163-362 28-228 (338)
174 3bos_A Putative DNA replicatio 98.3 8.2E-07 2.8E-11 90.1 8.6 175 163-363 27-219 (242)
175 1jbk_A CLPB protein; beta barr 98.3 2.7E-07 9.4E-12 89.9 3.9 47 163-215 21-67 (195)
176 3h4m_A Proteasome-activating n 98.3 1.5E-06 5.2E-11 90.6 9.1 189 163-360 16-230 (285)
177 2z4s_A Chromosomal replication 98.3 8.6E-06 2.9E-10 90.0 15.4 155 191-360 130-305 (440)
178 3pvs_A Replication-associated 98.3 7.6E-06 2.6E-10 90.2 14.5 176 163-361 25-215 (447)
179 2qz4_A Paraplegin; AAA+, SPG7, 98.2 9.3E-06 3.2E-10 83.4 14.2 188 163-361 5-222 (262)
180 3uk6_A RUVB-like 2; hexameric 98.2 1.7E-05 6E-10 85.9 16.7 185 163-361 43-303 (368)
181 4fs7_A Uncharacterized protein 98.2 1.2E-05 4.3E-10 87.9 15.3 149 554-711 156-306 (394)
182 3u61_B DNA polymerase accessor 98.2 5.7E-06 1.9E-10 88.0 12.0 172 163-359 25-214 (324)
183 4gt6_A Cell surface protein; l 98.2 3.8E-05 1.3E-09 84.1 18.8 268 528-823 58-369 (394)
184 3eie_A Vacuolar protein sortin 98.2 7E-06 2.4E-10 87.0 12.0 187 163-362 17-229 (322)
185 2qp9_X Vacuolar protein sortin 98.1 2.3E-05 8E-10 84.0 14.7 187 163-362 50-262 (355)
186 3cf0_A Transitional endoplasmi 98.1 2.1E-05 7.2E-10 82.4 13.0 181 163-356 14-223 (301)
187 1xwi_A SKD1 protein; VPS4B, AA 98.1 6.5E-05 2.2E-09 79.3 16.6 192 163-362 11-224 (322)
188 1l8q_A Chromosomal replication 98.1 3.8E-05 1.3E-09 81.5 14.7 150 190-357 36-204 (324)
189 3syl_A Protein CBBX; photosynt 98.0 2.2E-05 7.4E-10 82.8 12.3 163 165-331 32-220 (309)
190 1io0_A Tropomodulin; LRR prote 98.0 3.1E-06 1.1E-10 81.6 4.6 117 549-665 25-162 (185)
191 2p65_A Hypothetical protein PF 98.0 1.3E-06 4.5E-11 84.5 1.9 47 163-215 21-67 (187)
192 1d2n_A N-ethylmaleimide-sensit 98.0 3.9E-05 1.3E-09 79.1 12.8 169 164-352 33-228 (272)
193 3d8b_A Fidgetin-like protein 1 98.0 4.4E-05 1.5E-09 82.0 13.6 188 163-363 83-297 (357)
194 1sxj_C Activator 1 40 kDa subu 98.0 5.8E-05 2E-09 80.6 14.3 177 164-358 25-209 (340)
195 3b9p_A CG5977-PA, isoform A; A 98.0 8E-05 2.7E-09 77.9 14.7 185 163-362 20-234 (297)
196 2zan_A Vacuolar protein sortin 97.9 4.5E-05 1.5E-09 84.4 12.8 188 163-362 133-346 (444)
197 4gt6_A Cell surface protein; l 97.9 0.00046 1.6E-08 75.3 20.5 281 553-852 56-369 (394)
198 1a5t_A Delta prime, HOLB; zinc 97.9 0.00015 5.2E-09 77.0 16.0 175 170-360 8-204 (334)
199 3vfd_A Spastin; ATPase, microt 97.9 0.00022 7.6E-09 77.6 16.4 187 163-362 114-327 (389)
200 3ec2_A DNA replication protein 97.8 3.6E-05 1.2E-09 73.8 8.5 94 191-294 38-142 (180)
201 3n70_A Transport activator; si 97.8 2.6E-05 9E-10 71.6 7.0 114 165-294 2-115 (145)
202 3e4g_A ATP synthase subunit S, 97.8 2E-05 6.7E-10 73.9 5.1 38 679-716 62-99 (176)
203 4h09_A Hypothetical leucine ri 97.8 0.0021 7.3E-08 69.6 22.3 124 530-663 43-167 (379)
204 1io0_A Tropomodulin; LRR prote 97.7 1.6E-05 5.5E-10 76.5 3.9 119 526-644 29-164 (185)
205 3e4g_A ATP synthase subunit S, 97.7 2.8E-05 9.5E-10 72.9 4.8 37 584-620 62-98 (176)
206 3co5_A Putative two-component 97.7 1.9E-05 6.4E-10 72.5 3.6 111 164-294 4-115 (143)
207 4b4t_J 26S protease regulatory 97.6 0.00041 1.4E-08 73.9 13.4 181 163-354 147-354 (405)
208 1ojl_A Transcriptional regulat 97.6 0.00024 8.1E-09 74.2 11.3 48 164-215 2-49 (304)
209 3hu3_A Transitional endoplasmi 97.6 0.0001 3.5E-09 82.0 8.8 184 164-360 204-414 (489)
210 3rw6_A Nuclear RNA export fact 97.6 1.8E-05 6E-10 80.2 2.1 67 556-624 166-237 (267)
211 2bjv_A PSP operon transcriptio 97.6 5.2E-05 1.8E-09 77.9 5.4 48 164-215 6-53 (265)
212 2w58_A DNAI, primosome compone 97.6 3E-05 1E-09 76.0 3.4 120 164-295 25-159 (202)
213 2r62_A Cell division protease 97.5 2.3E-05 7.7E-10 80.8 2.1 158 163-329 10-197 (268)
214 3rw6_A Nuclear RNA export fact 97.5 1.7E-05 5.9E-10 80.3 1.2 80 604-684 167-257 (267)
215 4b4t_L 26S protease subunit RP 97.5 0.00061 2.1E-08 73.9 13.1 182 163-354 180-387 (437)
216 4h09_A Hypothetical leucine ri 97.5 0.0073 2.5E-07 65.3 21.7 263 527-819 63-341 (379)
217 4b4t_H 26S protease regulatory 97.5 0.00072 2.5E-08 73.0 13.0 183 163-354 208-415 (467)
218 3pxg_A Negative regulator of g 97.5 0.00045 1.5E-08 76.9 11.8 143 164-328 180-338 (468)
219 1qvr_A CLPB protein; coiled co 97.5 7.1E-05 2.4E-09 90.2 5.7 151 163-328 169-345 (854)
220 1in4_A RUVB, holliday junction 97.5 0.0011 3.8E-08 70.2 14.2 178 164-360 25-222 (334)
221 1lv7_A FTSH; alpha/beta domain 97.5 0.0014 4.8E-08 66.6 14.4 183 163-359 11-223 (257)
222 4fcw_A Chaperone protein CLPB; 97.4 0.0003 1E-08 74.0 9.3 51 165-215 18-71 (311)
223 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00014 4.9E-09 86.7 7.2 158 164-328 186-362 (758)
224 3pxi_A Negative regulator of g 97.4 0.00073 2.5E-08 80.5 13.0 144 164-328 180-338 (758)
225 4b4t_M 26S protease regulatory 97.4 0.0004 1.4E-08 75.2 9.1 182 162-354 179-387 (434)
226 1ofh_A ATP-dependent HSL prote 97.3 0.00039 1.3E-08 73.0 8.7 52 164-215 15-74 (310)
227 2gno_A DNA polymerase III, gam 97.3 0.0015 5E-08 67.9 11.8 147 168-328 1-152 (305)
228 2ce7_A Cell division protein F 97.3 0.0022 7.4E-08 70.7 13.6 182 163-354 15-221 (476)
229 4b4t_I 26S protease regulatory 97.2 0.00092 3.1E-08 71.4 9.9 181 163-354 181-388 (437)
230 4b4t_K 26S protease regulatory 97.2 0.0015 5.2E-08 70.6 10.9 181 163-354 171-379 (428)
231 3t15_A Ribulose bisphosphate c 97.1 0.00098 3.3E-08 69.2 8.1 27 189-215 34-60 (293)
232 2c9o_A RUVB-like 1; hexameric 97.1 0.0055 1.9E-07 67.9 14.5 94 257-360 297-409 (456)
233 3cf2_A TER ATPase, transitiona 97.0 0.00096 3.3E-08 77.9 8.1 183 163-354 203-407 (806)
234 2kjq_A DNAA-related protein; s 96.9 0.00042 1.4E-08 63.6 3.2 24 191-214 36-59 (149)
235 1ixz_A ATP-dependent metallopr 96.9 0.0026 8.9E-08 64.5 9.4 179 163-354 15-221 (254)
236 3pxi_A Negative regulator of g 96.7 0.0034 1.2E-07 74.7 9.2 155 164-328 491-675 (758)
237 2dhr_A FTSH; AAA+ protein, hex 96.6 0.011 3.7E-07 65.5 12.5 180 162-354 29-236 (499)
238 1iy2_A ATP-dependent metallopr 96.6 0.0051 1.7E-07 63.3 9.3 179 163-354 39-245 (278)
239 3lw7_A Adenylate kinase relate 96.5 0.019 6.6E-07 54.0 12.2 83 192-280 2-100 (179)
240 3m6a_A ATP-dependent protease 96.5 0.0044 1.5E-07 70.2 8.2 52 164-215 81-132 (543)
241 1ypw_A Transitional endoplasmi 96.4 0.0031 1E-07 75.0 6.9 161 163-328 203-385 (806)
242 2x8a_A Nuclear valosin-contain 96.4 0.012 4.1E-07 60.1 10.1 155 163-328 9-191 (274)
243 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0027 9.1E-08 75.7 5.7 52 164-215 458-512 (758)
244 1qvr_A CLPB protein; coiled co 96.3 0.0055 1.9E-07 73.8 8.4 51 164-214 558-611 (854)
245 1um8_A ATP-dependent CLP prote 96.1 0.012 4.1E-07 63.5 8.7 25 191-215 72-96 (376)
246 3cf2_A TER ATPase, transitiona 96.1 0.0065 2.2E-07 71.0 6.9 163 161-328 474-661 (806)
247 1ye8_A Protein THEP1, hypothet 96.0 0.017 5.8E-07 54.6 8.2 69 252-322 96-170 (178)
248 1g5t_A COB(I)alamin adenosyltr 95.7 0.02 6.7E-07 54.3 7.3 50 247-296 111-164 (196)
249 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.012 4E-07 60.5 5.4 65 191-266 123-193 (331)
250 1rz3_A Hypothetical protein rb 95.5 0.013 4.5E-07 56.7 5.5 42 169-213 3-44 (201)
251 1ji0_A ABC transporter; ATP bi 95.4 0.083 2.8E-06 52.6 11.0 23 192-214 33-55 (240)
252 2cvh_A DNA repair and recombin 95.3 0.046 1.6E-06 53.6 8.8 23 191-213 20-42 (220)
253 2b8t_A Thymidine kinase; deoxy 95.1 0.0071 2.4E-07 59.2 2.1 101 190-295 11-126 (223)
254 3tui_C Methionine import ATP-b 95.1 0.097 3.3E-06 55.1 10.7 64 238-301 163-230 (366)
255 1pgv_A TMD-1, tropomodulin TMD 95.1 0.016 5.4E-07 55.3 4.2 70 551-620 32-111 (197)
256 1pgv_A TMD-1, tropomodulin TMD 95.0 0.013 4.4E-07 55.9 3.6 86 579-664 37-136 (197)
257 3c8u_A Fructokinase; YP_612366 95.0 0.017 5.9E-07 56.2 4.5 37 173-213 8-44 (208)
258 1jr3_D DNA polymerase III, del 95.0 0.38 1.3E-05 50.8 15.3 156 191-360 18-184 (343)
259 3sr0_A Adenylate kinase; phosp 94.9 0.031 1.1E-06 54.1 6.0 70 193-264 2-83 (206)
260 2ixe_A Antigen peptide transpo 94.8 0.055 1.9E-06 54.9 7.9 52 248-299 167-221 (271)
261 2r44_A Uncharacterized protein 94.7 0.019 6.6E-07 60.6 4.3 44 164-215 27-70 (331)
262 1vpl_A ABC transporter, ATP-bi 94.7 0.1 3.4E-06 52.4 9.2 22 192-213 42-63 (256)
263 1qhx_A CPT, protein (chloramph 94.6 0.016 5.4E-07 54.8 3.0 24 192-215 4-27 (178)
264 1odf_A YGR205W, hypothetical 3 94.6 0.024 8.2E-07 58.2 4.5 25 189-213 29-53 (290)
265 3kb2_A SPBC2 prophage-derived 94.6 0.015 5.1E-07 54.6 2.7 23 192-214 2-24 (173)
266 3nbx_X ATPase RAVA; AAA+ ATPas 94.6 0.027 9.4E-07 62.4 5.2 43 165-215 23-65 (500)
267 1zp6_A Hypothetical protein AT 94.5 0.02 6.8E-07 54.9 3.5 25 191-215 9-33 (191)
268 1ly1_A Polynucleotide kinase; 94.5 0.02 6.9E-07 54.2 3.4 22 192-213 3-24 (181)
269 4g1u_C Hemin import ATP-bindin 94.4 0.11 3.8E-06 52.5 8.9 22 192-213 38-59 (266)
270 3vaa_A Shikimate kinase, SK; s 94.3 0.02 7E-07 55.3 3.1 25 191-215 25-49 (199)
271 3hws_A ATP-dependent CLP prote 94.3 0.032 1.1E-06 59.7 4.9 51 165-215 16-75 (363)
272 1kgd_A CASK, peripheral plasma 94.3 0.022 7.6E-07 54.0 3.2 24 191-214 5-28 (180)
273 3nh6_A ATP-binding cassette SU 94.1 0.15 5.2E-06 52.5 9.3 24 191-214 80-103 (306)
274 1gvn_B Zeta; postsegregational 94.1 0.047 1.6E-06 56.0 5.5 27 189-215 31-57 (287)
275 1kag_A SKI, shikimate kinase I 94.1 0.02 6.8E-07 53.8 2.4 24 192-215 5-28 (173)
276 3trf_A Shikimate kinase, SK; a 94.0 0.025 8.6E-07 53.8 3.0 34 191-224 5-40 (185)
277 1knq_A Gluconate kinase; ALFA/ 94.0 0.036 1.2E-06 52.2 4.1 24 191-214 8-31 (175)
278 3uie_A Adenylyl-sulfate kinase 94.0 0.033 1.1E-06 53.9 3.8 25 190-214 24-48 (200)
279 2rhm_A Putative kinase; P-loop 93.9 0.032 1.1E-06 53.5 3.6 39 191-229 5-45 (193)
280 1nks_A Adenylate kinase; therm 93.9 0.03 1E-06 53.6 3.4 24 192-215 2-25 (194)
281 3tau_A Guanylate kinase, GMP k 93.9 0.032 1.1E-06 54.3 3.5 25 191-215 8-32 (208)
282 1ukz_A Uridylate kinase; trans 93.9 0.034 1.2E-06 53.9 3.7 27 189-215 13-39 (203)
283 1z47_A CYSA, putative ABC-tran 93.8 0.19 6.4E-06 52.9 9.5 63 239-301 146-212 (355)
284 1g8p_A Magnesium-chelatase 38 93.8 0.026 9E-07 60.1 2.9 47 163-215 23-69 (350)
285 4eun_A Thermoresistant glucoki 93.8 0.031 1.1E-06 54.0 3.1 24 191-214 29-52 (200)
286 4gp7_A Metallophosphoesterase; 93.7 0.031 1.1E-06 52.4 3.0 22 191-212 9-30 (171)
287 1uf9_A TT1252 protein; P-loop, 93.7 0.037 1.3E-06 53.5 3.7 26 189-214 6-31 (203)
288 3fwy_A Light-independent proto 93.7 0.035 1.2E-06 57.6 3.6 23 189-211 46-68 (314)
289 1y63_A LMAJ004144AAA protein; 93.7 0.037 1.3E-06 52.6 3.5 36 190-225 9-47 (184)
290 2p5t_B PEZT; postsegregational 93.7 0.056 1.9E-06 54.4 5.0 41 174-215 16-56 (253)
291 3iij_A Coilin-interacting nucl 93.7 0.025 8.7E-07 53.5 2.3 25 191-215 11-35 (180)
292 2qt1_A Nicotinamide riboside k 93.6 0.039 1.3E-06 53.6 3.7 26 189-214 19-44 (207)
293 2ga8_A Hypothetical 39.9 kDa p 93.6 0.067 2.3E-06 55.8 5.5 46 167-214 2-47 (359)
294 3tqc_A Pantothenate kinase; bi 93.6 0.06 2.1E-06 55.8 5.2 45 167-213 70-114 (321)
295 2ze6_A Isopentenyl transferase 93.6 0.033 1.1E-06 56.1 3.2 23 192-214 2-24 (253)
296 3jvv_A Twitching mobility prot 93.6 0.17 5.9E-06 53.4 8.8 102 192-299 124-235 (356)
297 3t61_A Gluconokinase; PSI-biol 93.6 0.029 9.9E-07 54.3 2.7 24 191-214 18-41 (202)
298 2bdt_A BH3686; alpha-beta prot 93.6 0.039 1.3E-06 52.7 3.5 23 192-214 3-25 (189)
299 2qor_A Guanylate kinase; phosp 93.6 0.029 1E-06 54.4 2.7 26 190-215 11-36 (204)
300 3fvq_A Fe(3+) IONS import ATP- 93.6 0.26 8.9E-06 51.8 10.0 22 192-213 31-52 (359)
301 1kht_A Adenylate kinase; phosp 93.6 0.036 1.2E-06 53.0 3.2 23 192-214 4-26 (192)
302 1tev_A UMP-CMP kinase; ploop, 93.6 0.038 1.3E-06 53.0 3.4 24 191-214 3-26 (196)
303 1zuh_A Shikimate kinase; alpha 93.6 0.034 1.2E-06 51.9 3.0 36 190-225 6-43 (168)
304 3tr0_A Guanylate kinase, GMP k 93.5 0.037 1.3E-06 53.6 3.3 24 191-214 7-30 (205)
305 3dm5_A SRP54, signal recogniti 93.5 0.4 1.4E-05 51.9 11.5 24 190-213 99-122 (443)
306 3rfe_A Platelet glycoprotein I 93.5 0.092 3.2E-06 46.5 5.5 52 564-618 12-66 (130)
307 3d31_A Sulfate/molybdate ABC t 93.5 0.33 1.1E-05 50.9 10.6 22 192-213 27-48 (348)
308 1uj2_A Uridine-cytidine kinase 93.4 0.041 1.4E-06 55.4 3.6 26 189-214 20-45 (252)
309 2j41_A Guanylate kinase; GMP, 93.4 0.039 1.3E-06 53.5 3.3 25 191-215 6-30 (207)
310 3umf_A Adenylate kinase; rossm 93.4 0.042 1.4E-06 53.5 3.4 27 189-215 27-53 (217)
311 3asz_A Uridine kinase; cytidin 93.4 0.044 1.5E-06 53.4 3.5 24 190-213 5-28 (211)
312 3tlx_A Adenylate kinase 2; str 93.4 0.055 1.9E-06 54.1 4.3 26 190-215 28-53 (243)
313 3a00_A Guanylate kinase, GMP k 93.4 0.033 1.1E-06 53.1 2.5 23 192-214 2-24 (186)
314 3cm0_A Adenylate kinase; ATP-b 93.3 0.049 1.7E-06 51.8 3.7 24 191-214 4-27 (186)
315 2jaq_A Deoxyguanosine kinase; 93.3 0.041 1.4E-06 53.3 3.2 22 193-214 2-23 (205)
316 1jjv_A Dephospho-COA kinase; P 93.3 0.046 1.6E-06 53.0 3.6 22 192-213 3-24 (206)
317 2c95_A Adenylate kinase 1; tra 93.3 0.04 1.4E-06 52.9 3.1 25 191-215 9-33 (196)
318 1via_A Shikimate kinase; struc 93.3 0.033 1.1E-06 52.5 2.4 23 193-215 6-28 (175)
319 2yvu_A Probable adenylyl-sulfa 93.3 0.054 1.9E-06 51.5 4.0 27 189-215 11-37 (186)
320 1xjc_A MOBB protein homolog; s 93.3 0.043 1.5E-06 50.9 3.0 24 190-213 3-26 (169)
321 2if2_A Dephospho-COA kinase; a 93.3 0.041 1.4E-06 53.3 3.1 21 193-213 3-23 (204)
322 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.046 1.6E-06 55.3 3.5 24 191-214 4-27 (260)
323 2cdn_A Adenylate kinase; phosp 93.2 0.049 1.7E-06 52.6 3.6 26 189-214 18-43 (201)
324 1ex7_A Guanylate kinase; subst 93.2 0.033 1.1E-06 52.8 2.2 23 192-214 2-24 (186)
325 2iyv_A Shikimate kinase, SK; t 93.2 0.033 1.1E-06 52.9 2.2 33 193-225 4-38 (184)
326 3rlf_A Maltose/maltodextrin im 93.2 0.29 9.9E-06 51.9 9.6 22 192-213 30-51 (381)
327 1v43_A Sugar-binding transport 93.2 0.24 8.3E-06 52.4 9.1 22 192-213 38-59 (372)
328 2plr_A DTMP kinase, probable t 93.1 0.052 1.8E-06 52.9 3.5 24 192-215 5-28 (213)
329 1cke_A CK, MSSA, protein (cyti 93.1 0.046 1.6E-06 54.0 3.2 35 192-226 6-42 (227)
330 3ney_A 55 kDa erythrocyte memb 93.1 0.048 1.6E-06 52.1 3.1 25 190-214 18-42 (197)
331 1qf9_A UMP/CMP kinase, protein 93.0 0.06 2.1E-06 51.4 3.9 24 191-214 6-29 (194)
332 2bwj_A Adenylate kinase 5; pho 93.0 0.045 1.5E-06 52.7 2.9 24 192-215 13-36 (199)
333 1e6c_A Shikimate kinase; phosp 93.0 0.039 1.3E-06 51.7 2.4 23 192-214 3-25 (173)
334 2grj_A Dephospho-COA kinase; T 93.0 0.056 1.9E-06 51.6 3.5 38 189-226 10-49 (192)
335 2hf9_A Probable hydrogenase ni 92.9 0.08 2.7E-06 52.1 4.8 25 190-214 37-61 (226)
336 2pt5_A Shikimate kinase, SK; a 92.9 0.052 1.8E-06 50.6 3.2 32 193-224 2-35 (168)
337 2it1_A 362AA long hypothetical 92.9 0.22 7.6E-06 52.5 8.3 22 192-213 30-51 (362)
338 1lvg_A Guanylate kinase, GMP k 92.9 0.042 1.4E-06 52.9 2.5 22 192-213 5-26 (198)
339 1tue_A Replication protein E1; 92.9 0.075 2.6E-06 50.6 4.1 37 173-214 45-81 (212)
340 2yyz_A Sugar ABC transporter, 92.9 0.22 7.6E-06 52.5 8.2 22 192-213 30-51 (359)
341 3b5x_A Lipid A export ATP-bind 92.9 0.27 9.1E-06 56.2 9.5 24 191-214 369-392 (582)
342 3ch4_B Pmkase, phosphomevalona 92.8 0.39 1.3E-05 45.7 9.0 37 190-226 10-51 (202)
343 3aez_A Pantothenate kinase; tr 92.8 0.06 2E-06 55.9 3.7 25 189-213 88-112 (312)
344 3r20_A Cytidylate kinase; stru 92.8 0.079 2.7E-06 52.1 4.3 38 191-228 9-48 (233)
345 1aky_A Adenylate kinase; ATP:A 92.8 0.052 1.8E-06 53.3 3.1 25 191-215 4-28 (220)
346 2pez_A Bifunctional 3'-phospho 92.8 0.063 2.2E-06 50.7 3.5 25 190-214 4-28 (179)
347 3dl0_A Adenylate kinase; phosp 92.8 0.078 2.7E-06 51.8 4.3 34 193-226 2-37 (216)
348 2vli_A Antibiotic resistance p 92.8 0.035 1.2E-06 52.7 1.7 25 191-215 5-29 (183)
349 2pbr_A DTMP kinase, thymidylat 92.8 0.056 1.9E-06 51.7 3.2 22 193-214 2-23 (195)
350 2bbw_A Adenylate kinase 4, AK4 92.8 0.054 1.8E-06 54.3 3.2 24 191-214 27-50 (246)
351 2f6r_A COA synthase, bifunctio 92.7 0.062 2.1E-06 55.0 3.7 25 189-213 73-97 (281)
352 2wsm_A Hydrogenase expression/ 92.6 0.084 2.9E-06 51.7 4.4 41 168-214 13-53 (221)
353 2jeo_A Uridine-cytidine kinase 92.6 0.069 2.4E-06 53.4 3.7 24 190-213 24-47 (245)
354 3gmt_A Adenylate kinase; ssgci 92.5 0.2 6.9E-06 48.9 6.8 71 193-264 10-94 (230)
355 3j16_B RLI1P; ribosome recycli 92.5 0.48 1.6E-05 53.9 10.9 111 192-302 379-535 (608)
356 3kl4_A SRP54, signal recogniti 92.5 0.32 1.1E-05 52.6 9.0 24 190-213 96-119 (433)
357 1nn5_A Similar to deoxythymidy 92.5 0.062 2.1E-06 52.4 3.2 24 191-214 9-32 (215)
358 2wwf_A Thymidilate kinase, put 92.5 0.059 2E-06 52.5 3.0 24 191-214 10-33 (212)
359 1zd8_A GTP:AMP phosphotransfer 92.4 0.056 1.9E-06 53.4 2.8 25 191-215 7-31 (227)
360 1htw_A HI0065; nucleotide-bind 92.4 0.087 3E-06 48.4 3.8 24 191-214 33-56 (158)
361 2v54_A DTMP kinase, thymidylat 92.4 0.069 2.4E-06 51.6 3.3 25 191-215 4-28 (204)
362 1znw_A Guanylate kinase, GMP k 92.4 0.067 2.3E-06 51.9 3.2 24 191-214 20-43 (207)
363 3fb4_A Adenylate kinase; psych 92.3 0.062 2.1E-06 52.5 2.9 34 193-226 2-37 (216)
364 2z0h_A DTMP kinase, thymidylat 92.3 0.07 2.4E-06 51.2 3.2 22 193-214 2-23 (197)
365 1s96_A Guanylate kinase, GMP k 92.2 0.071 2.4E-06 52.1 3.2 24 191-214 16-39 (219)
366 1z6g_A Guanylate kinase; struc 92.2 0.06 2E-06 52.8 2.6 23 191-213 23-45 (218)
367 1rj9_A FTSY, signal recognitio 92.0 0.08 2.7E-06 54.7 3.4 24 190-213 101-124 (304)
368 1m7g_A Adenylylsulfate kinase; 92.0 0.091 3.1E-06 51.1 3.7 24 191-214 25-48 (211)
369 2ged_A SR-beta, signal recogni 92.0 0.13 4.4E-06 49.1 4.7 27 189-215 46-72 (193)
370 1gtv_A TMK, thymidylate kinase 92.0 0.045 1.5E-06 53.4 1.4 22 193-214 2-23 (214)
371 3qf4_A ABC transporter, ATP-bi 92.0 0.5 1.7E-05 53.9 10.3 24 191-214 369-392 (587)
372 1vht_A Dephospho-COA kinase; s 92.0 0.092 3.1E-06 51.4 3.7 23 191-213 4-26 (218)
373 4e22_A Cytidylate kinase; P-lo 91.9 0.082 2.8E-06 53.1 3.3 36 191-226 27-64 (252)
374 1zak_A Adenylate kinase; ATP:A 91.9 0.06 2.1E-06 52.9 2.3 25 191-215 5-29 (222)
375 2qgz_A Helicase loader, putati 91.9 0.12 4E-06 53.7 4.5 40 172-214 136-175 (308)
376 2f1r_A Molybdopterin-guanine d 91.6 0.063 2.2E-06 50.1 1.9 22 192-213 3-24 (171)
377 1ny5_A Transcriptional regulat 91.6 0.63 2.1E-05 49.9 10.0 47 165-215 138-184 (387)
378 3d3q_A TRNA delta(2)-isopenten 91.6 0.093 3.2E-06 54.6 3.3 24 192-215 8-31 (340)
379 1g41_A Heat shock protein HSLU 91.5 0.18 6.2E-06 54.6 5.6 52 164-215 15-74 (444)
380 2i3b_A HCR-ntpase, human cance 91.5 0.087 3E-06 50.1 2.8 21 193-213 3-23 (189)
381 4a74_A DNA repair and recombin 91.5 0.1 3.5E-06 51.5 3.4 25 189-213 23-47 (231)
382 1sq5_A Pantothenate kinase; P- 91.4 0.11 3.8E-06 53.9 3.8 25 189-213 78-102 (308)
383 3be4_A Adenylate kinase; malar 91.4 0.087 3E-06 51.6 2.8 24 192-215 6-29 (217)
384 2px0_A Flagellar biosynthesis 91.3 0.098 3.4E-06 53.8 3.2 22 191-212 105-126 (296)
385 3p32_A Probable GTPase RV1496/ 91.3 0.18 6.3E-06 53.4 5.4 25 189-213 77-101 (355)
386 2ehv_A Hypothetical protein PH 91.3 0.1 3.5E-06 52.3 3.3 22 191-212 30-51 (251)
387 3b9q_A Chloroplast SRP recepto 91.3 0.12 4.1E-06 53.3 3.8 24 190-213 99-122 (302)
388 3nwj_A ATSK2; P loop, shikimat 91.3 0.082 2.8E-06 52.8 2.5 24 192-215 49-72 (250)
389 3a8t_A Adenylate isopentenyltr 91.3 0.13 4.5E-06 53.3 4.0 25 191-215 40-64 (339)
390 3ake_A Cytidylate kinase; CMP 91.3 0.11 3.6E-06 50.4 3.2 35 193-227 4-40 (208)
391 3k1j_A LON protease, ATP-depen 91.2 0.14 4.8E-06 58.7 4.7 44 164-215 41-84 (604)
392 2xb4_A Adenylate kinase; ATP-b 91.1 0.11 3.8E-06 51.1 3.2 22 193-214 2-23 (223)
393 1sky_E F1-ATPase, F1-ATP synth 91.1 0.31 1.1E-05 52.9 6.9 23 192-214 152-174 (473)
394 3lnc_A Guanylate kinase, GMP k 91.1 0.072 2.5E-06 52.8 1.9 22 191-212 27-48 (231)
395 3exa_A TRNA delta(2)-isopenten 91.1 0.13 4.4E-06 52.6 3.7 25 191-215 3-27 (322)
396 1np6_A Molybdopterin-guanine d 91.1 0.11 3.8E-06 48.6 3.0 23 191-213 6-28 (174)
397 3crm_A TRNA delta(2)-isopenten 91.1 0.11 3.9E-06 53.6 3.3 24 192-215 6-29 (323)
398 2onk_A Molybdate/tungstate ABC 91.0 0.11 3.9E-06 51.5 3.2 23 192-214 25-47 (240)
399 1yrb_A ATP(GTP)binding protein 91.0 0.14 4.8E-06 51.7 4.0 24 189-212 12-35 (262)
400 1e4v_A Adenylate kinase; trans 91.0 0.11 3.9E-06 50.6 3.1 34 193-226 2-37 (214)
401 1vma_A Cell division protein F 91.0 0.14 5E-06 52.7 4.0 25 189-213 102-126 (306)
402 1q3t_A Cytidylate kinase; nucl 90.9 0.12 4E-06 51.4 3.2 39 189-227 14-54 (236)
403 3bk7_A ABC transporter ATP-bin 90.9 0.44 1.5E-05 54.2 8.3 111 192-302 383-539 (607)
404 1ak2_A Adenylate kinase isoenz 90.9 0.11 3.8E-06 51.5 3.0 25 191-215 16-40 (233)
405 3e70_C DPA, signal recognition 90.8 0.14 4.9E-06 53.3 3.9 25 189-213 127-151 (328)
406 2wji_A Ferrous iron transport 90.8 0.16 5.6E-06 46.9 3.9 23 192-214 4-26 (165)
407 2yl4_A ATP-binding cassette SU 90.8 0.51 1.8E-05 53.9 8.8 24 191-214 370-393 (595)
408 2pcj_A ABC transporter, lipopr 90.7 0.12 4E-06 50.8 3.0 23 192-214 31-53 (224)
409 1oix_A RAS-related protein RAB 90.7 0.17 5.8E-06 48.2 4.0 26 190-215 28-53 (191)
410 3tif_A Uncharacterized ABC tra 90.7 0.12 4.2E-06 51.1 3.1 23 192-214 32-54 (235)
411 4a1f_A DNAB helicase, replicat 90.6 0.34 1.2E-05 50.5 6.5 41 191-231 46-97 (338)
412 3zvl_A Bifunctional polynucleo 90.5 0.14 4.7E-06 55.7 3.6 27 189-215 256-282 (416)
413 2dyk_A GTP-binding protein; GT 90.5 0.16 5.5E-06 46.5 3.5 24 192-215 2-25 (161)
414 1a7j_A Phosphoribulokinase; tr 90.5 0.068 2.3E-06 54.9 1.0 24 190-213 4-27 (290)
415 3b60_A Lipid A export ATP-bind 90.5 0.29 9.9E-06 55.9 6.4 24 191-214 369-392 (582)
416 3foz_A TRNA delta(2)-isopenten 90.4 0.16 5.5E-06 51.8 3.7 26 190-215 9-34 (316)
417 2zej_A Dardarin, leucine-rich 90.4 0.13 4.3E-06 48.8 2.8 22 193-214 4-25 (184)
418 3b85_A Phosphate starvation-in 90.3 0.11 3.7E-06 50.4 2.2 21 192-212 23-43 (208)
419 2cbz_A Multidrug resistance-as 90.3 0.14 4.7E-06 50.8 3.1 23 192-214 32-54 (237)
420 1ltq_A Polynucleotide kinase; 90.3 0.15 5E-06 52.8 3.4 23 192-214 3-25 (301)
421 2og2_A Putative signal recogni 90.2 0.17 5.7E-06 53.4 3.7 25 189-213 155-179 (359)
422 2wjg_A FEOB, ferrous iron tran 90.2 0.24 8.2E-06 46.8 4.6 25 190-214 6-30 (188)
423 3gfo_A Cobalt import ATP-bindi 90.2 0.14 4.8E-06 51.9 3.1 23 192-214 35-57 (275)
424 2qmh_A HPR kinase/phosphorylas 90.2 0.16 5.4E-06 48.1 3.1 23 192-214 35-57 (205)
425 2f9l_A RAB11B, member RAS onco 90.1 0.15 5.1E-06 48.9 3.1 24 191-214 5-28 (199)
426 2yhs_A FTSY, cell division pro 90.1 0.27 9.1E-06 53.8 5.3 25 189-213 291-315 (503)
427 1svm_A Large T antigen; AAA+ f 90.1 0.25 8.5E-06 52.5 5.0 24 190-213 168-191 (377)
428 1b0u_A Histidine permease; ABC 90.0 0.15 5E-06 51.5 3.1 24 191-214 32-55 (262)
429 2w0m_A SSO2452; RECA, SSPF, un 90.0 0.16 5.5E-06 50.1 3.3 23 191-213 23-45 (235)
430 1sgw_A Putative ABC transporte 90.0 0.13 4.4E-06 50.0 2.5 23 192-214 36-58 (214)
431 1mv5_A LMRA, multidrug resista 89.9 0.16 5.6E-06 50.5 3.3 24 191-214 28-51 (243)
432 3end_A Light-independent proto 89.9 0.17 6E-06 52.4 3.6 24 189-212 39-62 (307)
433 1zu4_A FTSY; GTPase, signal re 89.9 0.19 6.3E-06 52.3 3.8 25 189-213 103-127 (320)
434 1g6h_A High-affinity branched- 89.9 0.16 5.3E-06 51.2 3.1 23 192-214 34-56 (257)
435 2d2e_A SUFC protein; ABC-ATPas 89.9 0.17 5.7E-06 50.7 3.3 22 192-213 30-51 (250)
436 3j16_B RLI1P; ribosome recycli 89.8 2 6.9E-05 48.7 12.5 25 191-215 103-127 (608)
437 2olj_A Amino acid ABC transpor 89.8 0.16 5.4E-06 51.2 3.1 24 191-214 50-73 (263)
438 1n0w_A DNA repair protein RAD5 89.8 0.17 5.8E-06 50.3 3.3 23 191-213 24-46 (243)
439 2pze_A Cystic fibrosis transme 89.7 0.16 5.6E-06 50.0 3.1 23 192-214 35-57 (229)
440 4a82_A Cystic fibrosis transme 89.7 0.53 1.8E-05 53.6 7.7 24 191-214 367-390 (578)
441 2vp4_A Deoxynucleoside kinase; 89.7 0.16 5.6E-06 50.1 3.0 26 189-214 18-43 (230)
442 2ff7_A Alpha-hemolysin translo 89.7 0.17 5.7E-06 50.6 3.1 23 192-214 36-58 (247)
443 4eaq_A DTMP kinase, thymidylat 89.7 0.2 6.9E-06 49.3 3.7 26 190-215 25-50 (229)
444 2v9p_A Replication protein E1; 89.6 0.17 5.8E-06 52.0 3.2 23 191-213 126-148 (305)
445 2zu0_C Probable ATP-dependent 89.6 0.18 6E-06 51.1 3.3 22 192-213 47-68 (267)
446 2ce2_X GTPase HRAS; signaling 89.6 0.18 6E-06 46.4 3.0 22 193-214 5-26 (166)
447 3qf4_B Uncharacterized ABC tra 89.5 0.2 6.9E-06 57.3 4.0 24 191-214 381-404 (598)
448 4f4c_A Multidrug resistance pr 89.5 1 3.5E-05 56.6 10.7 24 191-214 444-467 (1321)
449 2ghi_A Transport protein; mult 89.5 0.17 6E-06 50.8 3.1 23 192-214 47-69 (260)
450 2r6a_A DNAB helicase, replicat 89.4 0.65 2.2E-05 51.1 8.0 23 191-213 203-225 (454)
451 3rfe_A Platelet glycoprotein I 89.4 0.49 1.7E-05 41.7 5.6 51 587-641 12-65 (130)
452 1z2a_A RAS-related protein RAB 89.4 0.24 8.2E-06 45.6 3.8 24 191-214 5-28 (168)
453 2qi9_C Vitamin B12 import ATP- 89.4 0.18 6.1E-06 50.3 3.1 23 192-214 27-49 (249)
454 4f4c_A Multidrug resistance pr 89.4 1.1 3.7E-05 56.4 10.7 23 192-214 1106-1128(1321)
455 2ocp_A DGK, deoxyguanosine kin 89.3 0.2 7E-06 49.8 3.5 25 191-215 2-26 (241)
456 2eyu_A Twitching motility prot 89.3 0.22 7.7E-06 50.1 3.7 102 191-298 25-136 (261)
457 3bh0_A DNAB-like replicative h 89.2 1.5 5.1E-05 45.5 10.1 40 191-230 68-118 (315)
458 2nq2_C Hypothetical ABC transp 89.2 0.19 6.4E-06 50.4 3.1 23 192-214 32-54 (253)
459 2yz2_A Putative ABC transporte 89.2 0.19 6.4E-06 50.8 3.1 23 192-214 34-56 (266)
460 2nzj_A GTP-binding protein REM 89.2 0.27 9.2E-06 45.7 4.0 24 191-214 4-27 (175)
461 1q57_A DNA primase/helicase; d 89.2 0.64 2.2E-05 51.9 7.8 43 190-232 241-295 (503)
462 1ls1_A Signal recognition part 89.1 0.22 7.5E-06 51.2 3.6 23 191-213 98-120 (295)
463 1u0j_A DNA replication protein 89.1 0.36 1.2E-05 48.2 5.0 36 175-214 92-127 (267)
464 1nlf_A Regulatory protein REPA 89.0 0.2 6.8E-06 51.2 3.2 22 191-212 30-51 (279)
465 3con_A GTPase NRAS; structural 89.0 0.2 6.9E-06 47.5 3.1 23 192-214 22-44 (190)
466 2ihy_A ABC transporter, ATP-bi 89.0 0.19 6.7E-06 51.0 3.1 23 192-214 48-70 (279)
467 2v3c_C SRP54, signal recogniti 89.0 0.24 8.1E-06 53.9 3.9 24 190-213 98-121 (432)
468 2q6t_A DNAB replication FORK h 89.0 0.64 2.2E-05 50.9 7.5 41 191-231 200-252 (444)
469 1cr0_A DNA primase/helicase; R 89.0 0.2 6.8E-06 51.7 3.2 23 191-213 35-57 (296)
470 2lkc_A Translation initiation 88.9 0.25 8.4E-06 46.2 3.6 26 189-214 6-31 (178)
471 3vkw_A Replicase large subunit 88.9 0.91 3.1E-05 48.9 8.3 102 188-293 158-268 (446)
472 3dzd_A Transcriptional regulat 88.9 0.52 1.8E-05 50.1 6.5 48 164-215 129-176 (368)
473 1svi_A GTP-binding protein YSX 88.9 0.25 8.5E-06 47.0 3.6 25 190-214 22-46 (195)
474 2xxa_A Signal recognition part 88.8 0.24 8.4E-06 53.8 3.8 24 189-212 98-121 (433)
475 3q85_A GTP-binding protein REM 88.8 0.23 7.7E-06 46.0 3.2 23 192-214 3-25 (169)
476 1u8z_A RAS-related protein RAL 88.8 0.22 7.6E-06 45.8 3.1 24 191-214 4-27 (168)
477 3q72_A GTP-binding protein RAD 88.8 0.19 6.7E-06 46.3 2.7 22 193-214 4-25 (166)
478 1c1y_A RAS-related protein RAP 88.7 0.23 7.7E-06 45.8 3.1 22 193-214 5-26 (167)
479 1cp2_A CP2, nitrogenase iron p 88.7 0.23 8E-06 50.3 3.4 21 192-212 2-22 (269)
480 1fzq_A ADP-ribosylation factor 88.6 0.27 9.2E-06 46.3 3.6 26 189-214 14-39 (181)
481 2hxs_A RAB-26, RAS-related pro 88.6 0.36 1.2E-05 45.0 4.5 25 190-214 5-29 (178)
482 2r8r_A Sensor protein; KDPD, P 88.5 0.25 8.5E-06 47.9 3.2 23 192-214 7-29 (228)
483 2j37_W Signal recognition part 88.5 0.47 1.6E-05 52.4 5.9 24 189-212 99-122 (504)
484 2fn4_A P23, RAS-related protei 88.5 0.34 1.2E-05 45.2 4.3 26 189-214 7-32 (181)
485 3sop_A Neuronal-specific septi 88.5 0.23 7.9E-06 50.2 3.2 22 193-214 4-25 (270)
486 2erx_A GTP-binding protein DI- 88.5 0.24 8.4E-06 45.8 3.2 23 192-214 4-26 (172)
487 1kao_A RAP2A; GTP-binding prot 88.4 0.24 8.2E-06 45.5 3.1 23 192-214 4-26 (167)
488 2gj8_A MNME, tRNA modification 88.4 0.28 9.7E-06 45.7 3.6 23 192-214 5-27 (172)
489 3ihw_A Centg3; RAS, centaurin, 88.4 0.24 8.2E-06 46.8 3.1 24 191-214 20-43 (184)
490 1z0j_A RAB-22, RAS-related pro 88.4 0.24 8.2E-06 45.7 3.1 25 191-215 6-30 (170)
491 1ek0_A Protein (GTP-binding pr 88.4 0.24 8.4E-06 45.7 3.1 23 193-215 5-27 (170)
492 1z08_A RAS-related protein RAB 88.3 0.29 1E-05 45.2 3.7 25 190-214 5-29 (170)
493 3eph_A TRNA isopentenyltransfe 88.3 0.23 7.8E-06 52.7 3.1 23 192-214 3-25 (409)
494 3c5c_A RAS-like protein 12; GD 88.1 0.25 8.6E-06 46.8 3.1 24 191-214 21-44 (187)
495 1p5z_B DCK, deoxycytidine kina 88.1 0.19 6.5E-06 50.8 2.3 27 189-215 22-48 (263)
496 1m7b_A RND3/RHOE small GTP-bin 88.1 0.32 1.1E-05 45.9 3.7 25 190-214 6-30 (184)
497 2dr3_A UPF0273 protein PH0284; 88.1 0.24 8.1E-06 49.4 3.0 23 191-213 23-45 (247)
498 1nrj_B SR-beta, signal recogni 88.1 0.28 9.7E-06 47.7 3.5 27 189-215 10-36 (218)
499 2pjz_A Hypothetical protein ST 88.1 0.25 8.4E-06 49.7 3.1 22 192-213 31-52 (263)
500 2j9r_A Thymidine kinase; TK1, 88.1 0.46 1.6E-05 45.6 4.7 100 190-296 27-139 (214)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-41 Score=391.55 Aligned_cols=302 Identities=16% Similarity=0.206 Sum_probs=232.7
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHc---cC--------------CC--CcHHHHHHHH
Q 038265 167 IGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYN---DQ--------------KD--FGKRQIMTKI 227 (883)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~---~~--------------~~--~~~~~~~~~i 227 (883)
|||++++++|.++|.... +..+++|+|+|||||||||||+++|+ .. +. ++...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997532 24689999999999999999999997 21 12 4688899999
Q ss_pred HHHhhCCCC-------CCCChHHHHHHHHHHcCCC-ceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 228 INSVIGGNH-------GNLDPDRMQKVLRDSLNGK-RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 228 ~~~~~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
+.++..... ...+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 998865421 1234566788999999996 9999999999754323332 17999999999999887
Q ss_pred HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCHHHHHHHHcc
Q 038265 300 IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDWEHVRDN 379 (883)
Q Consensus 300 ~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~ 379 (883)
.++.. ...|++++|+++|||+||.+.+|... ..+.+.+++++|+++|+|+||||+++|+.|+.+ . .+|...+.+
T Consensus 280 ~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~ 353 (549)
T 2a5y_B 280 AASQT--CEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNN 353 (549)
T ss_dssp GCCSC--EEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHH
T ss_pred HcCCC--CeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHH
Confidence 65421 25799999999999999999987653 246778899999999999999999999999754 2 223222332
Q ss_pred ccccccCCCCCcchHHHHhhcCCChhhhHHhh-----------hhccCCCCcccchhHHHHHHHHh--cCCcCCCCCchH
Q 038265 380 DIWKLRQAPDDILPALRLSYDQLPPHLKQCFA-----------YCSIFPKDYKFASVHLVQFWMAQ--GLLQSPNENEEL 446 (883)
Q Consensus 380 ~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~s~fp~~~~~~~~~Li~~w~a~--gli~~~~~~~~~ 446 (883)
..+.. ....+..++.+||++||++.|.||+ |||+||+++.++ ++.|+|+ ||+.........
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 22221 3457889999999999999999999 999999999999 8899999 999766434556
Q ss_pred HHHHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHHHHHHHhcCce
Q 038265 447 EKIGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHDLALLVAKGEC 496 (883)
Q Consensus 447 ~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~dla~~i~~~e~ 496 (883)
++.+. ++++|+++||++...... ...| +|||++|++|+.++..++
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~~--~~~~--~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRMP--VLTF--KIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECSS--SCEE--ECCHHHHHHHHTTSCTHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCCC--ceEE--EeChHHHHHHHHHHHHHH
Confidence 67777 999999999999765431 3445 999999999998887665
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-33 Score=361.15 Aligned_cols=300 Identities=20% Similarity=0.249 Sum_probs=227.3
Q ss_pred cCccCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC----CCCc---------------
Q 038265 159 SFVRTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ----KDFG--------------- 219 (883)
Q Consensus 159 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~--------------- 219 (883)
.+.++..||||++++++|.++|.... ..+++|+|+||||+||||||+++|++. ..|.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 34456779999999999999997532 567999999999999999999998873 1121
Q ss_pred HHHHHHHHHHHhhCCC----CCCCChHHHHHHHHHHcCCC--ceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeec
Q 038265 220 KRQIMTKIINSVIGGN----HGNLDPDRMQKVLRDSLNGK--RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTR 293 (883)
Q Consensus 220 ~~~~~~~i~~~~~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 293 (883)
....+..++..+.... ....+.+.+...++..+.++ |+||||||||+.. .|. ...+||+||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~-------~~~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLK-------AFDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHT-------TTCSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHH-------hhcCCCEEEEEcC
Confidence 2233455555554322 22346778888999999877 9999999998532 222 2367999999999
Q ss_pred ChHHHHHHcccCCCCceecCC-CChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCHHH
Q 038265 294 SNKVALIMGTMRGTTGYNLQE-LPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHD 372 (883)
Q Consensus 294 ~~~v~~~~~~~~~~~~~~l~~-L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~ 372 (883)
++.++..+. .....+++.+ |+++||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. ..
T Consensus 266 ~~~~~~~~~--~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 266 DKSVTDSVM--GPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp STTTTTTCC--SCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred CHHHHHhhc--CCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hH
Confidence 998874322 2236799996 99999999999988432 233446689999999999999999999998654 35
Q ss_pred HHHHHccccc----cccCC----CCCcchHHHHhhcCCChhhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCCCc
Q 038265 373 WEHVRDNDIW----KLRQA----PDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNENE 444 (883)
Q Consensus 373 w~~~~~~~~~----~~~~~----~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~ 444 (883)
|+..+..... .+... ...+..++.+||+.|++++|.||+|||+||+++.|+...++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------
Confidence 6655433211 11111 13488999999999999999999999999999999999999999654
Q ss_pred hHHHHHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHHHHHHHhcCc
Q 038265 445 ELEKIGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHDLALLVAKGE 495 (883)
Q Consensus 445 ~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~dla~~i~~~e 495 (883)
++.+..++++|++++|++...... ...| +||+++|++++....++
T Consensus 408 --~~~~~~~l~~L~~~sl~~~~~~~~--~~~~--~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 --TEEVEDILQEFVNKSLLFCNRNGK--SFCY--YLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --HHHHHHHHHHHHHTTSCEEEESSS--SEEE--ECCHHHHHHHHHHTGGG
T ss_pred --HHHHHHHHHHHHhccceEEecCCC--ceEE--EecHHHHHHHHhhhhHH
Confidence 356788999999999998654322 2345 99999999999887654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.6e-33 Score=325.56 Aligned_cols=270 Identities=20% Similarity=0.249 Sum_probs=205.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC----------------CCCcHHHHHHHHH
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ----------------KDFGKRQIMTKII 228 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----------------~~~~~~~~~~~i~ 228 (883)
..|||++++++|.++|... ...++|+|+||||+||||||+++|++. ..++...++..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3599999999999999753 236899999999999999999999642 3445666666666
Q ss_pred HHhhC---CCCCC--------CChHHHHHHHHHHc---CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC
Q 038265 229 NSVIG---GNHGN--------LDPDRMQKVLRDSL---NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS 294 (883)
Q Consensus 229 ~~~~~---~~~~~--------~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 294 (883)
..+.. ..... .+.+.+...+++.+ .++|+||||||||+ ...|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccC
Confidence 54311 10100 12344556677655 78999999999997 3345443 2 69999999999
Q ss_pred hHHHHHHcccCCCCceecC------CCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCC
Q 038265 295 NKVALIMGTMRGTTGYNLQ------ELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGST 368 (883)
Q Consensus 295 ~~v~~~~~~~~~~~~~~l~------~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~ 368 (883)
+.++..+... ..|.++ +|+++||++||++.. +.. . .++..+| |+|+||||+++|+.|+++.
T Consensus 275 ~~Va~~l~g~---~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~---~---eeL~~eI---CgGLPLALkLaGs~Lr~k~ 341 (1221)
T 1vt4_I 275 KQVTDFLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR---P---QDLPREV---LTTNPRRLSIIAESIRDGL 341 (1221)
T ss_dssp SHHHHHHHHH---SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC---T---TTHHHHH---CCCCHHHHHHHHHHHHHSC
T ss_pred hHHHHhcCCC---eEEEecCccccCCcCHHHHHHHHHHHc-CCC---H---HHHHHHH---hCCCHHHHHHHHHHHhCCC
Confidence 9988654432 456777 999999999999984 221 1 1233333 9999999999999998764
Q ss_pred -CHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhh-hHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCCCchH
Q 038265 369 -DEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHL-KQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEEL 446 (883)
Q Consensus 369 -~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~~ 446 (883)
+.+.|+.. ....+..+|++||+.||++. |.||++||+||+++.|+.+.++.+|+++|
T Consensus 342 ~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------- 400 (1221)
T 1vt4_I 342 ATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------- 400 (1221)
T ss_dssp SSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------
T ss_pred CCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------
Confidence 56788753 23568899999999999999 99999999999999999999999998876
Q ss_pred HHHHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHHHH
Q 038265 447 EKIGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHDLA 488 (883)
Q Consensus 447 ~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~dla 488 (883)
++.+..++++|+++||++.... ...| +|||++++++
T Consensus 401 eedAe~~L~eLvdRSLLq~d~~----~~rY--rMHDLllELr 436 (1221)
T 1vt4_I 401 KSDVMVVVNKLHKYSLVEKQPK----ESTI--SIPSIYLELK 436 (1221)
T ss_dssp SHHHHHHHHHHHTSSSSSBCSS----SSEE--BCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEeCC----CCEE--EehHHHHHHh
Confidence 1247889999999999987311 2355 9999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=302.85 Aligned_cols=292 Identities=23% Similarity=0.291 Sum_probs=212.8
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC----------------CCCcHHHHHH
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ----------------KDFGKRQIMT 225 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----------------~~~~~~~~~~ 225 (883)
.++.||||++++++|.++|.... .+.++|+|+||||+||||||++++++. ...+...++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~ 197 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLM 197 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHH
Confidence 45679999999999999997532 457899999999999999999998642 1112333333
Q ss_pred HHH---HHhhCC----CCCCCChHHHHHHHHHHcCC--CceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH
Q 038265 226 KII---NSVIGG----NHGNLDPDRMQKVLRDSLNG--KRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 226 ~i~---~~~~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
.+. ..+... .....+.+.....++..+.+ +++||||||+|+. +.+. .+ .+|++||||||++.
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~-~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLK-AF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHH-TT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHH-Hh---cCCCeEEEECCCcH
Confidence 332 233211 12334567777788887765 7899999999853 2222 22 56899999999998
Q ss_pred HHHHHcccCCCCceec---CCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCCCCHHHH
Q 038265 297 VALIMGTMRGTTGYNL---QELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGSTDEHDW 373 (883)
Q Consensus 297 v~~~~~~~~~~~~~~l---~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~~w 373 (883)
++..+.. ..+++ ++|+.+||++||...++... +...+.+.+|+++|+|+||||.++|+.++.+. ..|
T Consensus 269 ~~~~~~~----~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 269 VTDSVMG----PKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGTTCCS----CEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred HHHhcCC----CceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 7654321 44555 58999999999999985421 12235678999999999999999999998653 357
Q ss_pred HHHHcccccc----cc----CCCCCcchHHHHhhcCCChhhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCCCch
Q 038265 374 EHVRDNDIWK----LR----QAPDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNENEE 445 (883)
Q Consensus 374 ~~~~~~~~~~----~~----~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~~~~ 445 (883)
+......... +. .....+..++..||+.||++.|.||++||+||+++.|+...+...|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 6654432111 11 1123578899999999999999999999999999999999899888543
Q ss_pred HHHHHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHHHHHHHh
Q 038265 446 LEKIGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHDLALLVA 492 (883)
Q Consensus 446 ~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~dla~~i~ 492 (883)
.+.+..++.+|++++|++..... . ...| +||++++++++...
T Consensus 408 -~~~~~~~l~~L~~~~Ll~~~~~~-~-~~~~--~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 -TEEVEDILQEFVNKSLLFCDRNG-K-SFRY--YLHDLQVDFLTEKN 449 (591)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEEET-T-EEEE--ECCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCcCeEEecCC-C-ccEE--EEcHHHHHHHHhhh
Confidence 23467889999999999854321 1 2345 99999999998773
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=4.3e-26 Score=274.63 Aligned_cols=264 Identities=20% Similarity=0.194 Sum_probs=212.4
Q ss_pred CCcccEEEecCcccc-ccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEE
Q 038265 559 SKSLRVLVLMNSAIE-VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 637 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 637 (883)
+++|++|++++|.+. .+|..+.++++|++|++++|...+.+|..++++++|++|++++|...+.+|..+..+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 566777777777776 6677788888888888888877778888888888888888888888888888888888999999
Q ss_pred eCCcccc-ccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCc
Q 038265 638 VTTKQKS-LLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLD 716 (883)
Q Consensus 638 l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~ 716 (883)
+++|.+. .+|..+..+++|+.|++++|.....+|..++.+++|+.|+|++|...+.+|..+..+++|+.|++++|....
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9988887 667788888999999999888777888888899999999999988888888888899999999998875431
Q ss_pred cCCccc-----------------------------------------------------------cccccCCCCCCCCCC
Q 038265 717 LNLNME-----------------------------------------------------------MEEEGSHHDCNNVRS 737 (883)
Q Consensus 717 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~~~ 737 (883)
..+... ....+..+.......
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 111000 000001111122234
Q ss_pred CcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeee
Q 038265 738 HLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLA 817 (883)
Q Consensus 738 ~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 817 (883)
+|+.|++++|.....+|..+ +.+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|..+..+++|+.|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 78899999987667888887 7889999999999998889999999999999999999999889999999999999999
Q ss_pred ccCCcch
Q 038265 818 IEECPAL 824 (883)
Q Consensus 818 l~~c~~l 824 (883)
+++|+..
T Consensus 711 ls~N~l~ 717 (768)
T 3rgz_A 711 LSNNNLS 717 (768)
T ss_dssp CCSSEEE
T ss_pred CcCCccc
Confidence 9998643
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=247.15 Aligned_cols=300 Identities=18% Similarity=0.195 Sum_probs=183.9
Q ss_pred ceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCCceEecccCCccccccCc-cccCCCcccE
Q 038265 534 RVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQLRHLDLSGNRKIKKLPN-SICELQSLQT 611 (883)
Q Consensus 534 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~ 611 (883)
+++.|.+..+. .....+..|.++++|++|+|++|.+..+ |..+.++++|++|+|++|. +..+|. .+.++++|++
T Consensus 33 ~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 33 ETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TCSEEECCSSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCE
T ss_pred CCcEEECCCCc---cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCE
Confidence 55666665322 2223334566677777777777777655 5566777777777777665 344443 4566777777
Q ss_pred eecCCCCCCccCCccccCCcccCEEEeCCcccccc-ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccC
Q 038265 612 LNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPR 690 (883)
Q Consensus 612 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 690 (883)
|+|++|...+..|..+..+++|++|++++|.+..+ +..+..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 77777666666666677777777777777766633 34566777777777777654333334466777777777777665
Q ss_pred CCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEee
Q 038265 691 LISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTI 770 (883)
Q Consensus 691 ~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l 770 (883)
....+..+..+++|+.|++++|..+..... ......+|+.|++++| .++.+|...+ ..+++|+.|+|
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L 255 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTP-----------NCLYGLNLTSLSITHC-NLTAVPYLAV-RHLVYLRFLNL 255 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECT-----------TTTTTCCCSEEEEESS-CCCSCCHHHH-TTCTTCCEEEC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCc-----------ccccCccccEEECcCC-cccccCHHHh-cCccccCeeEC
Confidence 554455666777777777777654432211 0112226777777775 4555664332 56677777777
Q ss_pred cCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCC
Q 038265 771 GDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGE 850 (883)
Q Consensus 771 ~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n 850 (883)
++|......+..+..+++|+.|+|++|......|..+..+++|+.|++++|.. .......+..+.++..+++++|
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-----~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-----TTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC-----SCCCGGGBSCGGGCCEEECCSS
T ss_pred CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC-----ceeCHhHcCCCcccCEEEccCC
Confidence 77765444455566777777777777766555566667777777777777632 1122223445566777777777
Q ss_pred cccch
Q 038265 851 MIKSS 855 (883)
Q Consensus 851 ~i~~~ 855 (883)
++...
T Consensus 331 ~l~c~ 335 (477)
T 2id5_A 331 PLACD 335 (477)
T ss_dssp CEECS
T ss_pred CccCc
Confidence 76543
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.9e-25 Score=258.49 Aligned_cols=335 Identities=14% Similarity=0.128 Sum_probs=257.5
Q ss_pred ceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccC------CcccEEEecCcccccccc--ccC
Q 038265 509 SVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKS------KSLRVLVLMNSAIEVLPR--KMG 580 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~lp~--~~~ 580 (883)
.++.+.+..+... ..++..+.++++|+.|.+..+.. ......+..+..+ ++|++|++++|.+..+|. .++
T Consensus 250 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~ 327 (636)
T 4eco_A 250 DLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327 (636)
T ss_dssp TCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTT-SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT
T ss_pred CCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCC-CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc
Confidence 4667777665433 34567788899999999974320 1121344445554 999999999999999998 899
Q ss_pred CCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcc-cCEEEeCCccccccccccCCCC--CCC
Q 038265 581 NLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVS-LRMFVVTTKQKSLLESGIGCLS--SLR 657 (883)
Q Consensus 581 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~~~l~--~L~ 657 (883)
++++|++|++++|.+.+.+| .++.+++|++|++++|... .+|..+..+++ |++|++++|.+..+|..+..++ +|+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 99999999999998666899 7999999999999987554 89999999999 9999999999998888777655 899
Q ss_pred eEEeecCCCccccccccc-------cCcccceeeeccccCCCCCccc-CCCCCCccEEEeccCCCCccCCccccccccCC
Q 038265 658 FLMISDCGNLEYLFEDID-------QLSVLRSLVINSCPRLISLPPA-MKYLSSLETLILLKCESLDLNLNMEMEEEGSH 729 (883)
Q Consensus 658 ~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 729 (883)
.|++++|......|..+. .+++|+.|++++|... .+|.. +..+++|+.|++++|....+........
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~---- 480 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE---- 480 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET----
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc----
Confidence 999999988777777777 7889999999998765 66654 4568999999999987543222110000
Q ss_pred CCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccc------cccccccC
Q 038265 730 HDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLIT------SCPKLSSL 803 (883)
Q Consensus 730 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~------~c~~l~~l 803 (883)
........+|+.|++++| .+..+|..+....+++|+.|+|++|.... +|..+..+++|+.|+|+ +|...+.+
T Consensus 481 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp TEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred cccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccC
Confidence 000011228999999997 56689987732388999999999997655 99999999999999994 56678889
Q ss_pred CCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhhhhhHH
Q 038265 804 PEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQLSLE 862 (883)
Q Consensus 804 p~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~l~ 862 (883)
|..+..+++|+.|++++|.. +.... .+. +.+..+++++|++..+......+
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l-~~ip~-----~~~--~~L~~L~Ls~N~l~~~~~~~~~~ 609 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDI-RKVNE-----KIT--PNISVLDIKDNPNISIDLSYVCP 609 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCS-----CCC--TTCCEEECCSCTTCEEECTTTHH
T ss_pred hHHHhcCCCCCEEECCCCcC-CccCH-----hHh--CcCCEEECcCCCCccccHHhcch
Confidence 99999999999999999975 22211 122 68999999999999877554333
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=7e-25 Score=261.79 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=125.0
Q ss_pred hHHhhccCCcccEEEecCccccc------------------cccccC--CCCCceEecccCCccccccCccccCCCcccE
Q 038265 552 VTSCISKSKSLRVLVLMNSAIEV------------------LPRKMG--NLRQLRHLDLSGNRKIKKLPNSICELQSLQT 611 (883)
Q Consensus 552 ~~~~~~~~~~L~~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 611 (883)
+|..+.++++|++|+|++|.+.. +|..++ ++++|++|+|++|.+.+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 45567888888888888888877 888877 8888888888888878888888888888888
Q ss_pred eecCCCC-CCc-cCCccccCCc-------ccCEEEeCCcccccccc--ccCCCCCCCeEEeecCCCccccccccccCccc
Q 038265 612 LNLGDCL-ELE-ELPKDIRYLV-------SLRMFVVTTKQKSLLES--GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVL 680 (883)
Q Consensus 612 L~L~~~~-~~~-~lp~~~~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 680 (883)
|+|++|. ..+ .+|..++.++ +|++|++++|.+..+|. .++.+++|+.|++++|... .+| .++.+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 8888876 555 6777666655 88888888888887777 7888888888888876644 666 77777888
Q ss_pred ceeeeccccCCCCCcccCCCCCC-ccEEEeccCCC
Q 038265 681 RSLVINSCPRLISLPPAMKYLSS-LETLILLKCES 714 (883)
Q Consensus 681 ~~L~l~~~~~~~~l~~~l~~l~~-L~~L~L~~~~~ 714 (883)
+.|+|++|... .+|..+..+++ |+.|+|++|..
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 88888777654 67777777777 77777777653
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=6.6e-25 Score=248.74 Aligned_cols=331 Identities=15% Similarity=0.056 Sum_probs=220.6
Q ss_pred CCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCC
Q 038265 506 IPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQ 584 (883)
Q Consensus 506 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~ 584 (883)
+|+.++.+.+..+... ...+..+..+++|+.|.+..+.. .....+..|.++++|++|++++|.+..+ |..+.++++
T Consensus 28 l~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccC-cCChhHhccCccccEEECcCCcc--cceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 5667888877665443 22345677888899988874322 2233345678888999999999888766 677888899
Q ss_pred ceEecccCCccccccCcc--ccCCCcccEeecCCCCCCccCCcc-ccCCcccCEEEeCCcccccc-ccccCCC--CCCCe
Q 038265 585 LRHLDLSGNRKIKKLPNS--ICELQSLQTLNLGDCLELEELPKD-IRYLVSLRMFVVTTKQKSLL-ESGIGCL--SSLRF 658 (883)
Q Consensus 585 L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~-~~~~~~l--~~L~~ 658 (883)
|++|++++|...+..|.. +.++++|++|++++|...+..|.. +..+++|++|++++|.+... +..+..+ .+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999988765555554 788889999999888776666765 78889999999998887743 3344444 45666
Q ss_pred EEeecCCCcccccc--------ccccCcccceeeeccccCCCCCcccCCC------------------------------
Q 038265 659 LMISDCGNLEYLFE--------DIDQLSVLRSLVINSCPRLISLPPAMKY------------------------------ 700 (883)
Q Consensus 659 L~l~~~~~~~~~~~--------~l~~l~~L~~L~l~~~~~~~~l~~~l~~------------------------------ 700 (883)
|++++|......+. .+..+++|+.|++++|......|..+..
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 66666543221111 1224456666666666544433332211
Q ss_pred ---------CCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeec
Q 038265 701 ---------LSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIG 771 (883)
Q Consensus 701 ---------l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~ 771 (883)
.++|+.|++++|...... +.......+|+.|++++|......|..+ ..+++|++|+++
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls 331 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALL-----------KSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLS 331 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEEC-----------TTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECC
T ss_pred cccccccccccCceEEEecCccccccc-----------hhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECC
Confidence 134555555544322211 1112234578888888874333334455 677889999999
Q ss_pred CCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCc
Q 038265 772 DCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEM 851 (883)
Q Consensus 772 ~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~ 851 (883)
+|......|..+..+++|++|+|++|......|..+..+++|+.|++++|... ......+..+++++.+++.+|+
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-----SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-----cCCHhHhccCCcccEEEccCCC
Confidence 88765566777888899999999998876666778888899999999988532 2223345677889999999999
Q ss_pred ccchhh
Q 038265 852 IKSSDI 857 (883)
Q Consensus 852 i~~~~~ 857 (883)
+....+
T Consensus 407 l~~~~~ 412 (455)
T 3v47_A 407 WDCSCP 412 (455)
T ss_dssp BCCCTT
T ss_pred cccCCC
Confidence 887654
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.5e-25 Score=259.49 Aligned_cols=330 Identities=12% Similarity=0.080 Sum_probs=262.1
Q ss_pred ceEEEEEEecccccc----------------cccccCC--CCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCc
Q 038265 509 SVRHLSFVSANALRN----------------DFASFLP--DLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNS 570 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~----------------~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 570 (883)
.++.+.+..+..... .++..+. ++++|+.|.+..+. .....+..+.++++|++|++++|
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCEEECTTC
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCEEECcCC
Confidence 577777766654331 1667777 89999999997433 22344567889999999999999
Q ss_pred c-cc--ccccccCCC------CCceEecccCCccccccCc--cccCCCcccEeecCCCCCCccCCccccCCcccCEEEeC
Q 038265 571 A-IE--VLPRKMGNL------RQLRHLDLSGNRKIKKLPN--SICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 639 (883)
Q Consensus 571 ~-~~--~lp~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 639 (883)
. +. .+|..++++ ++|++|++++|.+. .+|. .++++++|++|++++|...+.+| .+..+++|+.|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 87 489888776 99999999999754 8998 89999999999999988877999 99999999999999
Q ss_pred CccccccccccCCCCC-CCeEEeecCCCccccccccccCc--ccceeeeccccCCCCCcccCC-------CCCCccEEEe
Q 038265 640 TKQKSLLESGIGCLSS-LRFLMISDCGNLEYLFEDIDQLS--VLRSLVINSCPRLISLPPAMK-------YLSSLETLIL 709 (883)
Q Consensus 640 ~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~l~~~l~-------~l~~L~~L~L 709 (883)
+|.+..+|..+..+++ |++|++++|... .+|..+..++ +|+.|++++|...+..|..+. .+++|+.|++
T Consensus 362 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 362 YNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 9999999989999999 999999998754 7888777655 999999999998888888887 7889999999
Q ss_pred ccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcC------CCCCccEEeecCCCCCccCCccC
Q 038265 710 LKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQG------SSKTLQMLTIGDCPNFMALPRSL 783 (883)
Q Consensus 710 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~------~~~~L~~L~l~~~~~l~~lp~~~ 783 (883)
++|..-.+.... .....+|+.|++++| .+..+|...+.. .+++|++|+|++|... .+|..+
T Consensus 441 s~N~l~~lp~~~-----------~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 441 SNNQISKFPKEL-----------FSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CSSCCCSCCTHH-----------HHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred cCCccCcCCHHH-----------HccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 998654322110 112458999999997 455888765321 1239999999999754 889888
Q ss_pred C--CCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhh-hhCCCCCCCCCccCCCCeeeeCCCcccchhhh
Q 038265 784 K--DLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCE-RCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 784 ~--~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~ 858 (883)
. .+++|+.|+|++|...+ +|..+.++++|+.|++++|+.+.. .........+..+++++.+++.+|.+..+...
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred hhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence 7 99999999999998665 999999999999999987763321 11222233456788999999999999777643
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.9e-25 Score=266.34 Aligned_cols=314 Identities=15% Similarity=0.128 Sum_probs=202.9
Q ss_pred cccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccc-ccccccCC-----------------------
Q 038265 526 ASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIE-VLPRKMGN----------------------- 581 (883)
Q Consensus 526 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~----------------------- 581 (883)
+..+..+++|+.|.+..+.. ....+...+.++++|++|++++|.+. .+|..+.+
T Consensus 311 p~~~~~l~~L~~L~L~~n~l--~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNF--SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEE--EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred chHHhcCCCccEEECCCCcc--cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 34445555566665542211 11222233455555555555555554 44444433
Q ss_pred ----CCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccc-ccccccCCCCCC
Q 038265 582 ----LRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSL 656 (883)
Q Consensus 582 ----l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L 656 (883)
+++|++|++++|...+.+|..++++++|++|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 445555555555544455666666666666666666555566666666666666666666665 455556666666
Q ss_pred CeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCC
Q 038265 657 RFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVR 736 (883)
Q Consensus 657 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 736 (883)
++|++++|.....+|..++.+++|+.|+|++|...+.+|.++..+++|+.|++++|..... .+......
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------~p~~l~~l 537 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-----------IPAELGDC 537 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-----------CCGGGGGC
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-----------CCHHHcCC
Confidence 6666666665555666666666666666666666666666666666667776666643321 11122334
Q ss_pred CCcceEEeccCCCCccchhhhhc---------------------------------------------------------
Q 038265 737 SHLRTLCVAELTQLLELPQWLLQ--------------------------------------------------------- 759 (883)
Q Consensus 737 ~~L~~L~l~~~~~l~~l~~~~~~--------------------------------------------------------- 759 (883)
.+|+.|++++|+....+|..++.
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 58999999888655455544321
Q ss_pred -----------CCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhh
Q 038265 760 -----------GSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERC 828 (883)
Q Consensus 760 -----------~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~ 828 (883)
..+++|++|++++|...+.+|..++.+++|+.|+|++|...+.+|..++++++|+.|++++|.....
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~-- 695 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-- 695 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC--
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc--
Confidence 1246789999999988889999999999999999999999999999999999999999999864322
Q ss_pred CCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 829 KPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 829 ~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
....+..++.+..+++++|.+.+.-+
T Consensus 696 ---ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 696 ---IPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp ---CCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ---CChHHhCCCCCCEEECcCCcccccCC
Confidence 22335677889999999999876544
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=3.6e-24 Score=255.65 Aligned_cols=322 Identities=14% Similarity=0.040 Sum_probs=196.0
Q ss_pred ccccCC--CCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcc-cc--ccccccCCCC-------CceEecccC
Q 038265 525 FASFLP--DLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSA-IE--VLPRKMGNLR-------QLRHLDLSG 592 (883)
Q Consensus 525 ~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~lp~~~~~l~-------~L~~L~l~~ 592 (883)
++..+. .+++|+.|.+..+. .....+..+.++++|++|+|++|. +. .+|..++++. +|++|++++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred CChhhhhccCCCCCEEECcCCC---CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 444544 66677777765322 122233456666777777777665 54 3565444443 677777776
Q ss_pred CccccccCc--cccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCC-CCeEEeecCCCccc
Q 038265 593 NRKIKKLPN--SICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSS-LRFLMISDCGNLEY 669 (883)
Q Consensus 593 ~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~ 669 (883)
|.+. .+|. .++++++|++|+|++|... .+| .++.+++|+.|++++|.+..+|..+..+++ |+.|++++|.. ..
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L-~~ 633 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KY 633 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC-CS
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC-Cc
Confidence 6533 6666 6666777777777665544 666 666666777777776666666666666666 77777766553 35
Q ss_pred cccccccCcc--cceeeeccccCCCCCcc---cCC--CCCCccEEEeccCCCCccCCcccc------------ccccCCC
Q 038265 670 LFEDIDQLSV--LRSLVINSCPRLISLPP---AMK--YLSSLETLILLKCESLDLNLNMEM------------EEEGSHH 730 (883)
Q Consensus 670 ~~~~l~~l~~--L~~L~l~~~~~~~~l~~---~l~--~l~~L~~L~L~~~~~l~~~~~~~~------------~~~~~~~ 730 (883)
+|..+..++. |+.|++++|...+.+|. .+. .+++|+.|++++|....+...... ......+
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC
Confidence 5555544433 66666666554443332 111 223455555555433221110000 0000011
Q ss_pred CCCC--------CCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccccccc------
Q 038265 731 DCNN--------VRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITS------ 796 (883)
Q Consensus 731 ~~~~--------~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~------ 796 (883)
.... .+.+|+.|+|++| .+..+|..+....+++|+.|+|++|... .+|..+..+++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCC-ccchhhhcCCCCCEEECCCCCCccc
Confidence 1111 1127899999987 5668887772237899999999998654 4888888999999999976
Q ss_pred ccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhhhhhHHH
Q 038265 797 CPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQLSLER 863 (883)
Q Consensus 797 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~l~~ 863 (883)
|...+.+|..+.++++|+.|+|++|.. ...... +. ++|..|++++|++..+......+.
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-----l~--~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-----LT--PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-----CC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHh-----hc--CCCCEEECCCCCCCccChHHcccc
Confidence 666778888888999999999999865 222111 11 588999999999888775544333
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.4e-24 Score=243.33 Aligned_cols=304 Identities=18% Similarity=0.183 Sum_probs=246.8
Q ss_pred CCCCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccc-cCCC
Q 038265 504 QSIPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRK-MGNL 582 (883)
Q Consensus 504 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l 582 (883)
..+|..++.+.+..+.... ..+..+..+++|+.|.+..+ ......+..|.++++|++|+|++|.+..+|.. +.++
T Consensus 28 ~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n---~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 28 EGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNEN---IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp SCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTS---CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCC---ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 3466788888876655433 23456888999999999743 23334456788999999999999999998865 7899
Q ss_pred CCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccc-cccCCCCCCCeEEe
Q 038265 583 RQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMI 661 (883)
Q Consensus 583 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l 661 (883)
++|++|++++|.+....|..+.++++|++|++++|......|..+..+++|+.|++++|.+..++ ..+..+++|+.|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 99999999999877777888999999999999998877777888999999999999999998665 45889999999999
Q ss_pred ecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcce
Q 038265 662 SDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRT 741 (883)
Q Consensus 662 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 741 (883)
++|......+..+..+++|+.|++++|.....+|..+....+|++|++++|..-...... .....+|+.
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~ 252 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA-----------VRHLVYLRF 252 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH-----------HTTCTTCCE
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH-----------hcCccccCe
Confidence 998776655667899999999999999998888887777789999999998643322100 123458999
Q ss_pred EEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCC
Q 038265 742 LCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEEC 821 (883)
Q Consensus 742 L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c 821 (883)
|++++|. +..++...+ ..+++|+.|+|++|......|..+..+++|+.|+|++|......+..+..+++|+.|++++|
T Consensus 253 L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 253 LNLSYNP-ISTIEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp EECCSSC-CCEECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred eECCCCc-CCccChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 9999974 556555432 67899999999999877777888999999999999999755444445788999999999999
Q ss_pred cch
Q 038265 822 PAL 824 (883)
Q Consensus 822 ~~l 824 (883)
|..
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 854
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.1e-24 Score=232.99 Aligned_cols=252 Identities=19% Similarity=0.205 Sum_probs=167.6
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecC-cccc-ccccccCCCCCceEecccCCccccccCccccCCCccc
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMN-SAIE-VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQ 610 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 610 (883)
.+++.|.+..+...... ..+..+.++++|++|++++ |.+. .+|..++++++|++|++++|.+.+.+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCc-ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 35666666532221100 2234556666666666663 5554 5566666666666666666665456666666666666
Q ss_pred EeecCCCCCCccCCccccCCcccCEEEeCCcccc-ccccccCCCC-CCCeEEeecCCCccccccccccCcccceeeeccc
Q 038265 611 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLS-SLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSC 688 (883)
Q Consensus 611 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (883)
+|++++|...+.+|..+..+++|++|++++|.+. .+|..+..++ +|+.|++++|.....+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 6666666555566666666666666666666665 5555666665 666666666655555566666665 666666666
Q ss_pred cCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEE
Q 038265 689 PRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQML 768 (883)
Q Consensus 689 ~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L 768 (883)
......|..+..+++|+.|++++|. .....|. + ..+++|++|
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~-----------------------------------l~~~~~~-~--~~l~~L~~L 249 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNS-----------------------------------LAFDLGK-V--GLSKNLNGL 249 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSE-----------------------------------ECCBGGG-C--CCCTTCCEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCc-----------------------------------eeeecCc-c--cccCCCCEE
Confidence 6555566666666666666666542 1112222 2 467899999
Q ss_pred eecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchh
Q 038265 769 TIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALC 825 (883)
Q Consensus 769 ~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 825 (883)
++++|.....+|..+..+++|++|+|++|+..+.+|.. ..+++|+.|++.+||.++
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 99999877788999999999999999999988888875 789999999999998664
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=240.42 Aligned_cols=325 Identities=16% Similarity=0.128 Sum_probs=196.7
Q ss_pred CCCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCC
Q 038265 505 SIPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQ 584 (883)
Q Consensus 505 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~ 584 (883)
.+++.++.+.+..+.... ..+..+..+++|++|.+..+. .....+..|.++++|++|++++|.+..+|.. .+++
T Consensus 18 ~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 18 DLSQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp SCCTTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred cccccccEEECCCCcccc-cChhhccccccccEEecCCCc---cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 345678888876665432 233567788999999987433 3344456788899999999999999988877 7899
Q ss_pred ceEecccCCcccc-ccCccccCCCcccEeecCCCCCCccCCccccCCccc--CEEEeCCccc--c-ccccccCC------
Q 038265 585 LRHLDLSGNRKIK-KLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSL--RMFVVTTKQK--S-LLESGIGC------ 652 (883)
Q Consensus 585 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~-~~~~~~~~------ 652 (883)
|++|++++|.+.+ .+|..++++++|++|++++|...+ ..+..+++| +.|++++|.+ . ..|..+..
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 9999999987555 467889999999999998876543 234444555 6666655544 1 11111111
Q ss_pred --------------------CC---------------------------------------------------------C
Q 038265 653 --------------------LS---------------------------------------------------------S 655 (883)
Q Consensus 653 --------------------l~---------------------------------------------------------~ 655 (883)
++ +
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 11 3
Q ss_pred CCeEEeecCCCcccccccc-----------------------------------------------------ccCcccce
Q 038265 656 LRFLMISDCGNLEYLFEDI-----------------------------------------------------DQLSVLRS 682 (883)
Q Consensus 656 L~~L~l~~~~~~~~~~~~l-----------------------------------------------------~~l~~L~~ 682 (883)
|++|++++|...+.+|..+ ..+++|+.
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccE
Confidence 4444444433222333333 34445555
Q ss_pred eeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCC
Q 038265 683 LVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSS 762 (883)
Q Consensus 683 L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 762 (883)
|++++|.....+|..+..+++|+.|++++|........ +.......+|+.|++++|.....+|...+ ..+
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~---------~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-~~l 398 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI---------AEMTTQMKSLQQLDISQNSVSYDEKKGDC-SWT 398 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH---------HHHHTTCTTCCEEECCSSCCBCCGGGCSC-CCC
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccc---------hHHHhhCCCCCEEECCCCcCCcccccchh-ccC
Confidence 55555544444455555555555555555443211000 00011234666666666543332555422 455
Q ss_pred CCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCC
Q 038265 763 KTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHI 842 (883)
Q Consensus 763 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l 842 (883)
++|++|++++|.....+|..+. ++|+.|++++|. +..+|..+..+++|+.|++++|..- ......+..++++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~-----~l~~~~~~~l~~L 470 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK-----SVPDGIFDRLTSL 470 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-----CCCTTTTTTCTTC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCC-----ccCHHHhccCCcc
Confidence 6677777777665555554443 677888888776 4477777778888888888888532 1222235667888
Q ss_pred CeeeeCCCcccchh
Q 038265 843 PQIDLDGEMIKSSD 856 (883)
Q Consensus 843 ~~l~l~~n~i~~~~ 856 (883)
..+++.+|++....
T Consensus 471 ~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 471 QKIWLHTNPWDCSC 484 (520)
T ss_dssp CEEECCSSCBCCCH
T ss_pred cEEECcCCCCcccC
Confidence 88999999887644
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.6e-23 Score=246.62 Aligned_cols=338 Identities=16% Similarity=0.111 Sum_probs=200.5
Q ss_pred CCCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCC
Q 038265 505 SIPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLR 583 (883)
Q Consensus 505 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~ 583 (883)
.+|..++.+.+..+... ...+..+.++++|+.|.+..+. .....+..|.++++|++|++++|.+..+ |..+++++
T Consensus 29 ~~~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 45667777776554432 2223456777888888876332 2333445567778888888888877766 66777788
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCCCCc-cCCccccCCcccCEEEeCCccccccc-ccc-----------
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQKSLLE-SGI----------- 650 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~----------- 650 (883)
+|++|++++|...+..|..++++++|++|++++|...+ .+|..++++++|++|++++|.+...+ ..+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 88888888776444444667777777888777766554 56777777777777777776655321 111
Q ss_pred ----------------CCCCCCCeEEeecCCC------------------------------------------------
Q 038265 651 ----------------GCLSSLRFLMISDCGN------------------------------------------------ 666 (883)
Q Consensus 651 ----------------~~l~~L~~L~l~~~~~------------------------------------------------ 666 (883)
....+|+.|++++|..
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 1112344444444321
Q ss_pred --------------------------------ccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCC
Q 038265 667 --------------------------------LEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCES 714 (883)
Q Consensus 667 --------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~ 714 (883)
+..+| .+..+++|+.|++++|.. +.+|. + .+++|+.|++++|..
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSS
T ss_pred heeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcC
Confidence 12222 455666777888877765 66663 3 667777777766632
Q ss_pred CccCC--------------cccccc----------------------ccCCCCCCCCCCCcceEEeccCCCCccch-hhh
Q 038265 715 LDLNL--------------NMEMEE----------------------EGSHHDCNNVRSHLRTLCVAELTQLLELP-QWL 757 (883)
Q Consensus 715 l~~~~--------------~~~~~~----------------------~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~ 757 (883)
+.... +..... ....+.......+|+.|++++|......| ..+
T Consensus 341 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp CEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred ccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhh
Confidence 21110 000000 00000111122355555555543222222 122
Q ss_pred hcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccc-cCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCC
Q 038265 758 LQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLS-SLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDW 836 (883)
Q Consensus 758 ~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 836 (883)
..+++|++|++++|......|..+..+++|++|++++|.... .+|..+.++++|+.|++++|.... .....+
T Consensus 421 --~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~ 493 (606)
T 3vq2_A 421 --LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-----ISWGVF 493 (606)
T ss_dssp --TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-----ECTTTT
T ss_pred --hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-----cChhhh
Confidence 456777777777776666666777777777778877777665 367777777888888887774321 122335
Q ss_pred CccCCCCeeeeCCCcccchhh
Q 038265 837 PKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 837 ~~~~~l~~l~l~~n~i~~~~~ 857 (883)
..+++++.+++.+|.+....+
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEG
T ss_pred cccccCCEEECCCCcCCCcCH
Confidence 667888888888888877643
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.5e-23 Score=246.73 Aligned_cols=302 Identities=17% Similarity=0.110 Sum_probs=243.7
Q ss_pred ceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEee
Q 038265 534 RVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLN 613 (883)
Q Consensus 534 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 613 (883)
+++.+.+..+ ......+..|..+++|++|++++|.+..+|..+..+++|++|++++|......|..+.++++|++|+
T Consensus 255 ~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKH---YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTC---CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred ceeEEEeecC---ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 6778877633 2334445568889999999999999999999999999999999999986666677899999999999
Q ss_pred cCCCCCCccCCcc-ccCCcccCEEEeCCcccccc---ccccCCCCCCCeEEeecCCCccccccccccCcccceeeecccc
Q 038265 614 LGDCLELEELPKD-IRYLVSLRMFVVTTKQKSLL---ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCP 689 (883)
Q Consensus 614 L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 689 (883)
+++|...+.+|.. +..+++|++|++++|.+... +..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 9999887777655 88999999999999998855 5678999999999999988776677889999999999999988
Q ss_pred CCCCCcc-cCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCcc-ch--hhhhcCCCCCc
Q 038265 690 RLISLPP-AMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLE-LP--QWLLQGSSKTL 765 (883)
Q Consensus 690 ~~~~l~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~--~~~~~~~~~~L 765 (883)
.....|. .+..+++|+.|++++|....... .......+|+.|++++|..... ++ ..+ ..+++|
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~l~~L 478 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-----------QLFDGLPALQHLNLQGNHFPKGNIQKTNSL--QTLGRL 478 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCT-----------TTTTTCTTCCEEECTTCBCGGGEECSSCGG--GGCTTC
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCH-----------HHHhCCCCCCEEECCCCCCCccccccchhh--ccCCCc
Confidence 7666554 48899999999999986432211 1123356899999999854331 22 233 578999
Q ss_pred cEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCee
Q 038265 766 QMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQI 845 (883)
Q Consensus 766 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l 845 (883)
++|++++|......|..+..+++|++|+|++|......|..+.++++| .|++++|... ......+..++++..+
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~-----~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-----IILPSLLPILSQQRTI 552 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC-----CCCGGGHHHHHTSSEE
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc-----ccCHhhcccCCCCCEE
Confidence 999999998777778889999999999999999888888889999999 9999998532 1122224567889999
Q ss_pred eeCCCcccchhh
Q 038265 846 DLDGEMIKSSDI 857 (883)
Q Consensus 846 ~l~~n~i~~~~~ 857 (883)
++.+|++.....
T Consensus 553 ~l~~N~~~c~c~ 564 (606)
T 3t6q_A 553 NLRQNPLDCTCS 564 (606)
T ss_dssp ECTTCCEECSGG
T ss_pred eCCCCCccccCC
Confidence 999999986544
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.4e-23 Score=226.81 Aligned_cols=302 Identities=19% Similarity=0.224 Sum_probs=221.2
Q ss_pred ceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEe
Q 038265 509 SVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHL 588 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 588 (883)
.++.+.+..+..... ..+..+++|+.|.+..+.... ..+ +..+++|++|++++|.+..+| .+..+++|++|
T Consensus 45 ~L~~L~l~~~~i~~~---~~~~~~~~L~~L~l~~n~i~~---~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 45 SITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITD---ISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp TCSEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred cccEEEEeCCccccc---hhhhhcCCccEEEccCCcccc---chh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 456666555443322 235667888999887443322 212 778899999999999988875 58889999999
Q ss_pred cccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCcc
Q 038265 589 DLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLE 668 (883)
Q Consensus 589 ~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 668 (883)
++++|. +..+|. +..+++|++|++++|.....++ .+..+++|++|++++|.+...+. +..+++|+.|++++|.. .
T Consensus 116 ~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~ 190 (347)
T 4fmz_A 116 YLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-E 190 (347)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-C
T ss_pred ECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-c
Confidence 999886 556665 8889999999999887776655 48889999999999988886654 78889999999988754 3
Q ss_pred ccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCC
Q 038265 669 YLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELT 748 (883)
Q Consensus 669 ~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 748 (883)
.++. +..+++|+.|++++|.... ++. +..+++|++|++++|....... .....+|+.|++++|
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~~~-------------~~~l~~L~~L~l~~n- 253 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITDLSP-------------LANLSQLTWLEIGTN- 253 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-------------GTTCTTCCEEECCSS-
T ss_pred cccc-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCCCcc-------------hhcCCCCCEEECCCC-
Confidence 4443 7888999999998876543 333 7788899999999886433221 223458899999887
Q ss_pred CCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhh
Q 038265 749 QLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERC 828 (883)
Q Consensus 749 ~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~ 828 (883)
.+..++. + ..+++|++|++++|. +..++ .+..+++|+.|++++|......|..+..+++|+.|++++|+... ..
T Consensus 254 ~l~~~~~-~--~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~ 327 (347)
T 4fmz_A 254 QISDINA-V--KDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IR 327 (347)
T ss_dssp CCCCCGG-G--TTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CG
T ss_pred ccCCChh-H--hcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-cc
Confidence 5556643 3 578899999999985 44454 47788999999999998776777777888999999999987322 11
Q ss_pred CCCCCCCCCccCCCCeeeeCCCccc
Q 038265 829 KPLTGEDWPKIAHIPQIDLDGEMIK 853 (883)
Q Consensus 829 ~~~~~~~~~~~~~l~~l~l~~n~i~ 853 (883)
.+..+++++.+++.+|.|+
T Consensus 328 ------~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 328 ------PLASLSKMDSADFANQVIK 346 (347)
T ss_dssp ------GGGGCTTCSEESSSCC---
T ss_pred ------Chhhhhccceeehhhhccc
Confidence 1456788889999999875
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=7.8e-24 Score=227.59 Aligned_cols=222 Identities=27% Similarity=0.396 Sum_probs=165.8
Q ss_pred CCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEe
Q 038265 559 SKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 638 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 638 (883)
...++.|+++++.+..+|..+.++++|++|++++|. +..+|..++++++|++|+|++|... .+|..+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 577888888888888888888888888888888886 4488888888888888888886544 77888888888888888
Q ss_pred CCcccc-ccccccC---------CCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEE
Q 038265 639 TTKQKS-LLESGIG---------CLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLI 708 (883)
Q Consensus 639 ~~~~~~-~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~ 708 (883)
++|... .+|..+. .+++|++|++++|.. +.+|..++.+++|+.|++++|... .+|..+..+++|+.|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 875443 4554443 377777777777643 366666777777777777776543 4555666677777777
Q ss_pred eccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcc
Q 038265 709 LLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEA 788 (883)
Q Consensus 709 L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~ 788 (883)
+++|.. ...+|..+ ..+++|++|+|++|+..+.+|..+..+++
T Consensus 236 Ls~n~~-----------------------------------~~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 236 LRGCTA-----------------------------------LRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp CTTCTT-----------------------------------CCBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CcCCcc-----------------------------------hhhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 766542 33344444 56788888888888888888888888888
Q ss_pred ccccccccccccccCCCCCCCCCCcCeeeccCC
Q 038265 789 LENLLITSCPKLSSLPEGMHHLTTLKTLAIEEC 821 (883)
Q Consensus 789 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c 821 (883)
|++|+|++|+.++.+|..+.++++|+.+++..+
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 888888888888888888888888888887653
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=3.1e-23 Score=244.03 Aligned_cols=220 Identities=17% Similarity=0.142 Sum_probs=108.6
Q ss_pred ccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcc-cCCCCCCcc
Q 038265 627 IRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPP-AMKYLSSLE 705 (883)
Q Consensus 627 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~ 705 (883)
+..+++|+.|++++|.+..+|..+..+++|++|++++|......|..+..+++|+.|++++|.....+|. .+..+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 5556666666666666666666666666666666666654444455566666666666666655544443 366666666
Q ss_pred EEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCc-cCC
Q 038265 706 TLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPR-SLK 784 (883)
Q Consensus 706 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~ 784 (883)
.|++++|........ ........+|+.|++++|......|..+ ..+++|++|++++|......|. .+.
T Consensus 354 ~L~l~~n~l~~~~~~---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 354 ELDLSHDDIETSDCC---------NLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp EEECCSSCCCEEEES---------TTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred EEECCCCccccccCc---------chhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcCCCcccchhhh
Confidence 666666543322100 0011122345555555443222222222 3344444444444433322222 234
Q ss_pred CCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhh----------------------hCCCCCCCCCccCCC
Q 038265 785 DLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCER----------------------CKPLTGEDWPKIAHI 842 (883)
Q Consensus 785 ~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~----------------------~~~~~~~~~~~~~~l 842 (883)
.+++|++|++++|......|..+..+++|+.|++++|+..... ........+..++++
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 4444444444444443333444444444444444444321100 011112234556677
Q ss_pred CeeeeCCCcccchhh
Q 038265 843 PQIDLDGEMIKSSDI 857 (883)
Q Consensus 843 ~~l~l~~n~i~~~~~ 857 (883)
+.+++.+|.+....+
T Consensus 503 ~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSI 517 (606)
T ss_dssp CEEECCSSCCCGGGG
T ss_pred CEEECCCCccCcCCh
Confidence 777777777766553
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2e-23 Score=236.63 Aligned_cols=316 Identities=15% Similarity=0.073 Sum_probs=238.3
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccc-cc-ccccCCCCCceEecccCCccccccCccccCCCccc
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIE-VL-PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQ 610 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 610 (883)
++++.|.+..+. .....+..|.++++|++|++++|.+. .+ |..+.++++|++|++++|.+.+..|..++++++|+
T Consensus 30 ~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 678999887432 33344567889999999999999885 45 55689999999999999986666788899999999
Q ss_pred EeecCCCCCCccCCcc--ccCCcccCEEEeCCcccccc-ccc-cCCCCCCCeEEeecCCCccccccccccC--cccceee
Q 038265 611 TLNLGDCLELEELPKD--IRYLVSLRMFVVTTKQKSLL-ESG-IGCLSSLRFLMISDCGNLEYLFEDIDQL--SVLRSLV 684 (883)
Q Consensus 611 ~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~ 684 (883)
+|++++|...+..|.. +..+++|++|++++|.+... |.. +..+++|++|++++|......+..+..+ ++|+.|+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 9999998777666655 88999999999999998865 433 7899999999999987766666667666 7899999
Q ss_pred eccccCCCCCccc--------CCCCCCccEEEeccCCCCccCCcccc-------------------c-------cc--cC
Q 038265 685 INSCPRLISLPPA--------MKYLSSLETLILLKCESLDLNLNMEM-------------------E-------EE--GS 728 (883)
Q Consensus 685 l~~~~~~~~l~~~--------l~~l~~L~~L~L~~~~~l~~~~~~~~-------------------~-------~~--~~ 728 (883)
+++|......+.. +..+++|++|++++|........... . .. ..
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 9987754432222 34678999999999864321100000 0 00 00
Q ss_pred CCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCC
Q 038265 729 HHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMH 808 (883)
Q Consensus 729 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~ 808 (883)
.........+|+.|+++++......|..+ ..+++|++|++++|......|..+..+++|++|+|++|...+..|..+.
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccccccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 00001112479999999986555566666 7889999999999987777788899999999999999987666677788
Q ss_pred CCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhhh
Q 038265 809 HLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 809 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~ 858 (883)
.+++|+.|++++|... ......+..+++++.+++.+|.++.....
T Consensus 345 ~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIR-----ALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcccCCEEECCCCccc-----ccChhhccccccccEEECCCCccccCCHh
Confidence 9999999999999532 22234466789999999999999987654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=8.1e-23 Score=237.70 Aligned_cols=325 Identities=16% Similarity=0.107 Sum_probs=212.4
Q ss_pred CCCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCC
Q 038265 505 SIPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQ 584 (883)
Q Consensus 505 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~ 584 (883)
.+|+.++.+.+..+.... ..+..+..+++|+.|.+..+. .....+..|.++++|++|++++|.+..+|.. .+++
T Consensus 49 ~~~~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 49 DLPPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp TSCTTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCCcCEEECCCCCccc-cChhhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 345677888776655432 234567888899999887432 3344456678889999999999999988877 7889
Q ss_pred ceEecccCCcccc-ccCccccCCCcccEeecCCCCCCccCCccccCCccc--CEEEeCCccc--c-ccccccC-------
Q 038265 585 LRHLDLSGNRKIK-KLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSL--RMFVVTTKQK--S-LLESGIG------- 651 (883)
Q Consensus 585 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~-~~~~~~~------- 651 (883)
|++|++++|.+.+ .+|..++++++|++|++++|...+. .+..+++| +.|++++|.+ . ..|..+.
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 9999999887443 3457888899999999988765432 33344444 7777766655 1 1111111
Q ss_pred -------------------CCC-------------------------------------------------------CCC
Q 038265 652 -------------------CLS-------------------------------------------------------SLR 657 (883)
Q Consensus 652 -------------------~l~-------------------------------------------------------~L~ 657 (883)
.++ +|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 111 444
Q ss_pred eEEeecCCCcccccccc-----------------------------------------------------ccCcccceee
Q 038265 658 FLMISDCGNLEYLFEDI-----------------------------------------------------DQLSVLRSLV 684 (883)
Q Consensus 658 ~L~l~~~~~~~~~~~~l-----------------------------------------------------~~l~~L~~L~ 684 (883)
+|++++|...+.+|..+ +.+++|+.|+
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 359 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEE
Confidence 44444443322333322 4566777777
Q ss_pred eccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCC
Q 038265 685 INSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKT 764 (883)
Q Consensus 685 l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 764 (883)
+++|...+..|..+..+++|+.|++++|..-...... .......+|+.|++++|.....+|...+ ..+++
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~l~~ 429 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA---------LMTKNMSSLETLDVSLNSLNSHAYDRTC-AWAES 429 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH---------HTTTTCTTCCEEECTTSCCBSCCSSCCC-CCCTT
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccch---------hhhcCCCCCCEEECCCCcCCCccChhhh-cCccc
Confidence 7777666666677777777777777776433211100 0112345788888888754333665432 56688
Q ss_pred ccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCe
Q 038265 765 LQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQ 844 (883)
Q Consensus 765 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~ 844 (883)
|++|++++|.....+|..+. ++|+.|+|++|. +..+|..+..+++|+.|++++|..- ......+..++++..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~-----~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-----SVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCC-----CCCTTSTTTCTTCCC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCC-----CCCHHHHhcCCCCCE
Confidence 88888888876666655443 689999999985 5688888889999999999998532 122223667788999
Q ss_pred eeeCCCcccchh
Q 038265 845 IDLDGEMIKSSD 856 (883)
Q Consensus 845 l~l~~n~i~~~~ 856 (883)
+++.+|++.+.-
T Consensus 502 L~l~~N~~~c~c 513 (562)
T 3a79_B 502 IWLHDNPWDCTC 513 (562)
T ss_dssp EECCSCCBCCCH
T ss_pred EEecCCCcCCCc
Confidence 999999987643
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=245.86 Aligned_cols=301 Identities=17% Similarity=0.097 Sum_probs=167.1
Q ss_pred CCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCC
Q 038265 506 IPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQ 584 (883)
Q Consensus 506 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~ 584 (883)
+|+.++.+.+..+... ...+..+..+.+|+.|.+..+. ......+..|.++++|++|+|++|.+..+ |..+.++++
T Consensus 22 lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~--~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTC--CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCC--CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 5666777776554432 2234556677777777776321 12233345567777777777777777655 566777777
Q ss_pred ceEecccCCccccccCcc--ccCCCcccEeecCCCCCCccCC-ccccCCcccCEEEeCCccccc-cccccCCC--CCCCe
Q 038265 585 LRHLDLSGNRKIKKLPNS--ICELQSLQTLNLGDCLELEELP-KDIRYLVSLRMFVVTTKQKSL-LESGIGCL--SSLRF 658 (883)
Q Consensus 585 L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l--~~L~~ 658 (883)
|++|+|++|...+.+|.. ++++++|++|+|++|...+..| ..++++++|++|++++|.+.. .+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 777777777655545544 6677777777777765554433 456777777777777776653 33445544 67777
Q ss_pred EEeecCCCccccccccccCcc------cceeeeccccCCCCCcccCCC--------------------------------
Q 038265 659 LMISDCGNLEYLFEDIDQLSV------LRSLVINSCPRLISLPPAMKY-------------------------------- 700 (883)
Q Consensus 659 L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~l~~~l~~-------------------------------- 700 (883)
|+++.|......+..++.+++ |+.|++++|......+..+..
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 777776655555555555544 777777776544333332211
Q ss_pred ------CCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCC
Q 038265 701 ------LSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCP 774 (883)
Q Consensus 701 ------l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~ 774 (883)
.++|+.|++++|...... +.......+|+.|++++|......|..+ ..+++|++|+|++|.
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLN-----------SRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNL 325 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEEC-----------SCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCC
T ss_pred hhhccccCCccEEECCCCcccccC-----------hhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCC
Confidence 123333443333221110 0011122355566665553222223333 455566666666665
Q ss_pred CCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCc
Q 038265 775 NFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 775 ~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
.....|..+..+++|+.|++++|......+..+.++++|+.|++++|.
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 444445555666666666666665333333345556666666666653
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=8.4e-23 Score=238.62 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=116.9
Q ss_pred ccCcccceeeeccccCCCC--CcccCCCCCCccEEEeccCCCCccCCcc------------ccccccCCC-CCCCCCCCc
Q 038265 675 DQLSVLRSLVINSCPRLIS--LPPAMKYLSSLETLILLKCESLDLNLNM------------EMEEEGSHH-DCNNVRSHL 739 (883)
Q Consensus 675 ~~l~~L~~L~l~~~~~~~~--l~~~l~~l~~L~~L~L~~~~~l~~~~~~------------~~~~~~~~~-~~~~~~~~L 739 (883)
..+++|+.|++++|..... .|..+..+++|++|++++|......... ........+ .......+|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 3556777777777654332 2555667778888888776533221100 000000011 112334588
Q ss_pred ceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCC-ccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeec
Q 038265 740 RTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNF-MALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAI 818 (883)
Q Consensus 740 ~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 818 (883)
+.|++++|......|..+ ..+++|++|++++|... ..+|..+..+++|++|+|++|......|..+..+++|+.|++
T Consensus 424 ~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 888888886555556555 67888999999988765 367888888999999999998877777888888999999999
Q ss_pred cCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 819 EECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 819 ~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
++|.. .......+..++++..+++.+|.+...-.
T Consensus 502 ~~n~l-----~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 502 ASNQL-----KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSSCC-----SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcC-----CCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 98842 12223345677889999999999886543
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=234.32 Aligned_cols=315 Identities=14% Similarity=0.078 Sum_probs=201.6
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCCceEecccCCccccccCccccCCCcccE
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQT 611 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 611 (883)
++++.|.+..+. .....+..|.++++|++|++++|.+..+ |..+.++++|++|++++|. +..+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSE
T ss_pred ccccEEECCCCc---ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccE
Confidence 789999997433 3344556789999999999999999877 6789999999999999997 5688876 8999999
Q ss_pred eecCCCCCCc-cCCccccCCcccCEEEeCCccccccccccCCCCCC--CeEEeecCCC--cccccccccc----------
Q 038265 612 LNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSL--RFLMISDCGN--LEYLFEDIDQ---------- 676 (883)
Q Consensus 612 L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~---------- 676 (883)
|++++|...+ .+|..++.+++|++|++++|.+.. ..+..+++| +.|++++|.. ....|..+..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 9999987766 578999999999999999999875 357778888 9999999866 3333333332
Q ss_pred ----------------Cc---------------------------------------------------------cccee
Q 038265 677 ----------------LS---------------------------------------------------------VLRSL 683 (883)
Q Consensus 677 ----------------l~---------------------------------------------------------~L~~L 683 (883)
++ +|+.|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 22 45555
Q ss_pred eeccccCCCCCcccC-----CCCCCccEEEeccCCCCccCCcccc-----------c---cccCCCCCCCCCCCcceEEe
Q 038265 684 VINSCPRLISLPPAM-----KYLSSLETLILLKCESLDLNLNMEM-----------E---EEGSHHDCNNVRSHLRTLCV 744 (883)
Q Consensus 684 ~l~~~~~~~~l~~~l-----~~l~~L~~L~L~~~~~l~~~~~~~~-----------~---~~~~~~~~~~~~~~L~~L~l 744 (883)
++++|...+.+|..+ ..+++|+.+++++|.. ........ . .......+.....+|+.|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 565555555677766 6677777777666543 21100000 0 00000000123346666666
Q ss_pred ccCCCCccchhhhhcCCCCCccEEeecCCCCCc--cCCccCCCCccccccccccccccccCCCC-CCCCCCcCeeeccCC
Q 038265 745 AELTQLLELPQWLLQGSSKTLQMLTIGDCPNFM--ALPRSLKDLEALENLLITSCPKLSSLPEG-MHHLTTLKTLAIEEC 821 (883)
Q Consensus 745 ~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~c 821 (883)
++|.....+|..+ ..+++|++|++++|.... .+|..+..+++|++|++++|.....+|.. +..+++|+.|++++|
T Consensus 332 s~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 332 SNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp CSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred ECCccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 6664333345544 456666666666665443 34445566666666666666654445543 445556666666555
Q ss_pred cchhhhhCC----------------CCCCCCCccCCCCeeeeCCCcccchhhh
Q 038265 822 PALCERCKP----------------LTGEDWPKIAHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 822 ~~l~~~~~~----------------~~~~~~~~~~~l~~l~l~~n~i~~~~~~ 858 (883)
......... ........++++..+++.+|.+..+...
T Consensus 410 ~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 410 ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 321111100 0111122567778888888888766544
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5e-23 Score=221.30 Aligned_cols=230 Identities=23% Similarity=0.325 Sum_probs=195.3
Q ss_pred CCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEe
Q 038265 582 LRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMI 661 (883)
Q Consensus 582 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 661 (883)
..++++|++++|. +..+|..++++++|++|+|++|... .+|..++.+++|++|++++|.+..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 4689999999987 6689999999999999999997655 8999999999999999999999988989999999999999
Q ss_pred ecCCCcccccccccc---------CcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCC
Q 038265 662 SDCGNLEYLFEDIDQ---------LSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDC 732 (883)
Q Consensus 662 ~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 732 (883)
++|+..+.+|..++. +++|+.|++++|... .+|..+..+++|++|++++|.
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~------------------- 217 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP------------------- 217 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC-------------------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC-------------------
Confidence 999988888877664 899999999987654 888888889999999988763
Q ss_pred CCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCC
Q 038265 733 NNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTT 812 (883)
Q Consensus 733 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~ 812 (883)
+..+|..+ ..+++|++|++++|...+.+|..+..+++|++|+|++|+.++.+|..+.++++
T Consensus 218 -----------------l~~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 218 -----------------LSALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp -----------------CCCCCGGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred -----------------CCcCchhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 22344444 56789999999999999999999999999999999999999999999999999
Q ss_pred cCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 813 LKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 813 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
|+.|+|++|+.+... ...+..++.+..+.+..+.+.....
T Consensus 279 L~~L~L~~n~~~~~i-----P~~l~~L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRL-----PSLIAQLPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp CCEEECTTCTTCCCC-----CGGGGGSCTTCEEECCGGGSCC---
T ss_pred CCEEeCCCCCchhhc-----cHHHhhccCceEEeCCHHHHHHHhh
Confidence 999999999865432 2335667778888888877765553
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.5e-23 Score=221.21 Aligned_cols=255 Identities=16% Similarity=0.150 Sum_probs=211.5
Q ss_pred cceEEEEEEecccccc-cccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccc-ccccccCCCCCc
Q 038265 508 KSVRHLSFVSANALRN-DFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIE-VLPRKMGNLRQL 585 (883)
Q Consensus 508 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L 585 (883)
..++.+.+..+..... ..+..+..+++|+.|.+.. .+......+..+.++++|++|++++|.+. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE--ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC--CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 5688888876655421 4567788899999999972 11222334556889999999999999997 889999999999
Q ss_pred eEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCc-ccCEEEeCCcccc-ccccccCCCCCCCeEEeec
Q 038265 586 RHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLV-SLRMFVVTTKQKS-LLESGIGCLSSLRFLMISD 663 (883)
Q Consensus 586 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~ 663 (883)
++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+..++ +|++|++++|.+. ..|..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999987778999999999999999999988889999999998 9999999999998 6777888887 99999999
Q ss_pred CCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEE
Q 038265 664 CGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLC 743 (883)
Q Consensus 664 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 743 (883)
|......|..+..+++|+.|++++|......|. +..+++|++|++++|..
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l----------------------------- 256 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI----------------------------- 256 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC-----------------------------
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc-----------------------------
Confidence 887777888899999999999999887655555 77888999998887632
Q ss_pred eccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCC
Q 038265 744 VAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLP 804 (883)
Q Consensus 744 l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp 804 (883)
...+|.++ ..+++|++|++++|...+.+|.. ..+++|+.|++++|+.+...|
T Consensus 257 ------~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 257 ------YGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ------EECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ------cCcCChHH--hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 12345555 56789999999999877788876 889999999999999766544
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2e-22 Score=223.13 Aligned_cols=304 Identities=12% Similarity=0.076 Sum_probs=204.7
Q ss_pred CCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccccc-ccCCCCCceEecccCCccccccCccccCCCcc
Q 038265 531 DLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLPNSICELQSL 609 (883)
Q Consensus 531 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 609 (883)
.+.+++.+.+... .....++..+..+++|++|++++|.+..++. .+..+++|++|++++|......|..++++++|
T Consensus 43 ~l~~l~~l~l~~~---~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESC---EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCC---chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 4578899888732 3334455667889999999999999988765 78999999999999998655556778999999
Q ss_pred cEeecCCCCCCccCCcc-ccCCcccCEEEeCCccccccc-cccCCCCCCCeEEeecCCCccccccccccCcccceeeecc
Q 038265 610 QTLNLGDCLELEELPKD-IRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINS 687 (883)
Q Consensus 610 ~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 687 (883)
++|++++|.. ..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.... + .++.+++|+.|++++
T Consensus 120 ~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCS
T ss_pred CEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccc
Confidence 9999999754 466665 589999999999999998654 468899999999999976433 3 255667777777766
Q ss_pred ccCCCCCcccCCCCCCccEEEeccCCCCccCCcccc--------ccccCCCCCCCCCCCcceEEeccCCCCccchhhhhc
Q 038265 688 CPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEM--------EEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQ 759 (883)
Q Consensus 688 ~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 759 (883)
|.... + ...++|+.|++++|..-........ ..............+|+.|++++|......|..+
T Consensus 196 n~l~~-~----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-- 268 (390)
T 3o6n_A 196 NLLST-L----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF-- 268 (390)
T ss_dssp SCCSE-E----ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG--
T ss_pred ccccc-c----CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHc--
Confidence 54321 1 1223444444444432111000000 0000000011233477778887764333335555
Q ss_pred CCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCcc
Q 038265 760 GSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKI 839 (883)
Q Consensus 760 ~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 839 (883)
..+++|++|++++|. +..+|..+..+++|++|+|++|. +..+|..+..+++|+.|++++|+.. ......+
T Consensus 269 ~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~--------~~~~~~~ 338 (390)
T 3o6n_A 269 VKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV--------TLKLSTH 338 (390)
T ss_dssp TTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCC--------CCCCCTT
T ss_pred cccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccc--------eeCchhh
Confidence 567788888888774 45566666677888888888875 4466666677788888888887532 1124566
Q ss_pred CCCCeeeeCCCcccchhhh
Q 038265 840 AHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 840 ~~l~~l~l~~n~i~~~~~~ 858 (883)
+.++.+++.+|++......
T Consensus 339 ~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CCCSEEECCSSCEEHHHHH
T ss_pred ccCCEEEcCCCCccchhHH
Confidence 7888889999988865533
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.7e-22 Score=217.37 Aligned_cols=279 Identities=17% Similarity=0.226 Sum_probs=223.4
Q ss_pred cceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceE
Q 038265 508 KSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRH 587 (883)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 587 (883)
+.++.+.+..+..... +. +..+++|++|.+..+..... ..+..+++|++|++++|.+..+|. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDI--SP-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCccccc--hh-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 4678888766654433 22 78899999999985433322 247899999999999999998876 889999999
Q ss_pred ecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCc
Q 038265 588 LDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNL 667 (883)
Q Consensus 588 L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 667 (883)
|++++|.....++. +..+++|++|++++|... .++. +..+++|+.|++++|.+..++. +..+++|+.|++++|...
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC
Confidence 99999976766665 899999999999997654 4443 8899999999999999987765 889999999999997654
Q ss_pred cccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccC
Q 038265 668 EYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAEL 747 (883)
Q Consensus 668 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 747 (883)
. ++. +..+++|+.|++++|... .++. +..+++|++|++++|...... ......+|+.|++++|
T Consensus 213 ~-~~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 213 D-ITP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDIN-------------AVKDLTKLKMLNVGSN 275 (347)
T ss_dssp C-CGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCG-------------GGTTCTTCCEEECCSS
T ss_pred C-Cch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCCh-------------hHhcCCCcCEEEccCC
Confidence 3 333 889999999999998754 4454 889999999999998644321 1233458999999998
Q ss_pred CCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCc
Q 038265 748 TQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 748 ~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
.+..++. + ..+++|+.|++++|......|..+..+++|++|++++|+.....| +..+++|+.|++++|+
T Consensus 276 -~l~~~~~-~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 276 -QISDISV-L--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCCCCGG-G--GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred -ccCCChh-h--cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 5666654 3 578999999999998777777888899999999999999655444 7889999999999997
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.7e-22 Score=234.88 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=77.8
Q ss_pred CCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccc-cCCCCC
Q 038265 506 IPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRK-MGNLRQ 584 (883)
Q Consensus 506 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l~~ 584 (883)
+++.++.+.+..+... ...+..+..+++|++|.+..+. .....+..|.++++|++|++++|.+..+|.. ++++++
T Consensus 24 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 24 LTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CCTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 3456666666554432 2223455667777777776332 2223334566666777777777766665544 666667
Q ss_pred ceEecccCCcccc-ccCccccCCCcccEeecCCCCCCccCC-ccccCCcccCEEEeCCcccc
Q 038265 585 LRHLDLSGNRKIK-KLPNSICELQSLQTLNLGDCLELEELP-KDIRYLVSLRMFVVTTKQKS 644 (883)
Q Consensus 585 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~ 644 (883)
|++|++++|.... ..|..++++++|++|++++|...+.+| ..+..+++|++|++++|.+.
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 7777776665332 344556666666666666665455554 35566666666666665554
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=8.3e-22 Score=212.76 Aligned_cols=273 Identities=15% Similarity=0.123 Sum_probs=187.4
Q ss_pred cccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCC
Q 038265 561 SLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 640 (883)
Q Consensus 561 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 640 (883)
++++++++++.+..+|..+. ++|++|++++|.+.+..+..++++++|++|++++|...+..|..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 67788888888888776654 5788888888764443344677888888888888766666677788888888888888
Q ss_pred ccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCC--CCcccCCCCCCccEEEeccCCCCccC
Q 038265 641 KQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLI--SLPPAMKYLSSLETLILLKCESLDLN 718 (883)
Q Consensus 641 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~l~~~l~~l~~L~~L~L~~~~~l~~~ 718 (883)
|.+..+|..+. ++|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++|+.|++++|..-...
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 88777665554 688888888776554444557788888888888776532 45566777888888888877543221
Q ss_pred CccccccccCCCCCCCCCCCcceEEeccCCCCccc-hhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccc
Q 038265 719 LNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLEL-PQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSC 797 (883)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c 797 (883)
. ....+|+.|++++|. +..+ +..+ ..+++|++|++++|......+..+..+++|++|+|++|
T Consensus 188 ~--------------~~~~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 188 Q--------------GLPPSLTELHLDGNK-ITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp S--------------SCCTTCSEEECTTSC-CCEECTGGG--TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred c--------------cccccCCEEECCCCc-CCccCHHHh--cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 1 111478888888874 4444 4444 67788888888888765555556778888888888888
Q ss_pred cccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCC-CCccCCCCeeeeCCCcccch
Q 038265 798 PKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGED-WPKIAHIPQIDLDGEMIKSS 855 (883)
Q Consensus 798 ~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~~~~~l~~l~l~~n~i~~~ 855 (883)
. +..+|..+..+++|+.|++++|+.-........+.. ......+..+++.+|++...
T Consensus 251 ~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 251 K-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp C-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred c-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 6 457887788888888888888853211111111111 11245677888888887653
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.6e-22 Score=234.69 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=146.8
Q ss_pred HhhccCCcccEEEecCcccccccc-ccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCcc-ccCCc
Q 038265 554 SCISKSKSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKD-IRYLV 631 (883)
Q Consensus 554 ~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~ 631 (883)
..+..+++|++|+|++|.+..+|. .++.+++|++|+|++|.+.+..|..++++++|++|+|++|... .+|.. +++++
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 147 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCC
Confidence 334445555555555555544432 4455555555555555433333333445555555555544322 33322 34555
Q ss_pred ccCEEEeCCccccccc-cccCCCCCCCeEEeecCCCccccccccccCc-------------------ccceeeeccccCC
Q 038265 632 SLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISDCGNLEYLFEDIDQLS-------------------VLRSLVINSCPRL 691 (883)
Q Consensus 632 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-------------------~L~~L~l~~~~~~ 691 (883)
+|++|++++|.+..++ ..+..+++|++|++++|.... + .++.++ +|+.|++++|..
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l- 223 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI- 223 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C--CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC-
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c--ChhhhhhhhhhhcccCccccccCCchhheeeccCCcc-
Confidence 5555555555544322 234455555555555443221 1 123334 444555544432
Q ss_pred CCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeec
Q 038265 692 ISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIG 771 (883)
Q Consensus 692 ~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~ 771 (883)
..++..+ .++|+.|++++|..... .......+|+.|++++|......|..+ ..+++|+.|+|+
T Consensus 224 ~~~~~~~--~~~L~~L~L~~n~l~~~-------------~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls 286 (597)
T 3oja_B 224 NVVRGPV--NVELTILKLQHNNLTDT-------------AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYIS 286 (597)
T ss_dssp CEEECSC--CSCCCEEECCSSCCCCC-------------GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECT
T ss_pred ccccccc--CCCCCEEECCCCCCCCC-------------hhhccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECC
Confidence 2222211 24566666665542211 112234478888888775444445555 677888888888
Q ss_pred CCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCc
Q 038265 772 DCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEM 851 (883)
Q Consensus 772 ~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~ 851 (883)
+|. +..+|..+..+++|+.|+|++|.. ..+|..+..+++|+.|++++|+.. +..+..++.+..+++.+|.
T Consensus 287 ~N~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 287 NNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV--------TLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp TSC-CCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCCC--------CCCCCTTCCCSEEECCSSC
T ss_pred CCC-CCCCCcccccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCCCC--------CcChhhcCCCCEEEeeCCC
Confidence 875 445666667788888888888764 467766777788888888887632 1124556788888888888
Q ss_pred ccchh
Q 038265 852 IKSSD 856 (883)
Q Consensus 852 i~~~~ 856 (883)
+.+..
T Consensus 357 ~~~~~ 361 (597)
T 3oja_B 357 WDCNS 361 (597)
T ss_dssp EEHHH
T ss_pred CCChh
Confidence 77543
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2.5e-22 Score=236.29 Aligned_cols=276 Identities=16% Similarity=0.050 Sum_probs=217.5
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
+..+++|+.|+++++.+..+| .+..+++|++|++++|.. +.+|. + .+++|++|++++|...+.. .+..+++|++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 354 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSY 354 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCE
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCE
Confidence 778899999999999999888 888899999999999875 88884 5 8999999999988666655 5678999999
Q ss_pred EEeCCcccccc---ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCc-ccCCCCCCccEEEecc
Q 038265 636 FVVTTKQKSLL---ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLP-PAMKYLSSLETLILLK 711 (883)
Q Consensus 636 L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~L~~ 711 (883)
|++++|.+... +..+..+++|++|++++|. +..+|..+..+++|+.|++++|......| ..+..+++|+.|++++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 99999988755 5677888999999999876 45577888899999999999988766666 5788899999999998
Q ss_pred CCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCcc-chhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccc
Q 038265 712 CESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLE-LPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALE 790 (883)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 790 (883)
|....... .......+|+.|++++|..... +|..+ ..+++|++|++++|......|..+..+++|+
T Consensus 434 n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 434 TNTKIDFD-----------GIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp SCCEECCT-----------TTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCccch-----------hhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 86443221 1123345899999988754332 56555 6788999999999987777788888999999
Q ss_pred ccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccC-CCCeeeeCCCcccchhh
Q 038265 791 NLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIA-HIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 791 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~-~l~~l~l~~n~i~~~~~ 857 (883)
+|+|++|......|..+.++++|+.|++++|.. +... ..+..+. ++..+++.+|++.....
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~p-----~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-ETSK-----GILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC-CCEE-----SCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcC-cccC-----HhHhhhcccCcEEEccCCCcccCCc
Confidence 999999987777788888899999999999863 2211 1144454 58889999998876443
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=7.1e-22 Score=235.71 Aligned_cols=161 Identities=19% Similarity=0.162 Sum_probs=123.1
Q ss_pred CCCCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccccc-ccCCC
Q 038265 504 QSIPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPR-KMGNL 582 (883)
Q Consensus 504 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l 582 (883)
..+|..++++.+..+.... ..+..+..+++|++|.+..+. .....+..+.++++|++|++++|.+..+|. .+.++
T Consensus 21 ~~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 21 DDLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp SCSCTTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCCCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 3456788888876655433 233457788999999997433 333445678889999999999999999887 58999
Q ss_pred CCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccccccc-cc--CCCCCCCeE
Q 038265 583 RQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLES-GI--GCLSSLRFL 659 (883)
Q Consensus 583 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~--~~l~~L~~L 659 (883)
++|++|++++|.+.+..|..++++++|++|++++|...+..|..+.++++|++|++++|.+...+. .+ ..+++|+.|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 999999999987554455678999999999999988777778888899999999999998875443 22 345778888
Q ss_pred EeecCCCcc
Q 038265 660 MISDCGNLE 668 (883)
Q Consensus 660 ~l~~~~~~~ 668 (883)
++++|....
T Consensus 177 ~L~~n~l~~ 185 (680)
T 1ziw_A 177 ELSSNQIKE 185 (680)
T ss_dssp ECTTCCCCC
T ss_pred ECCCCcccc
Confidence 887775433
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=9.6e-22 Score=212.37 Aligned_cols=239 Identities=20% Similarity=0.169 Sum_probs=116.2
Q ss_pred cccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCC
Q 038265 561 SLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 640 (883)
Q Consensus 561 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 640 (883)
++++++++++.+..+|..+. ++|++|++++|.+....|..+.++++|++|++++|...+..|..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 35555555555555554442 3555555555543322233455555555555555544444455555555555555555
Q ss_pred ccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCC--CCCcccCCCCCCccEEEeccCCCCccC
Q 038265 641 KQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRL--ISLPPAMKYLSSLETLILLKCESLDLN 718 (883)
Q Consensus 641 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~l~~~l~~l~~L~~L~L~~~~~l~~~ 718 (883)
|.+..+|..+. ++|++|++++|......+..+..+++|+.|++++|... +..|..+..+ +|+.|++++|..-...
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 55554444333 45555555554433222233455555555555555432 1334444444 5555555554322111
Q ss_pred CccccccccCCCCCCCCCCCcceEEeccCCCCccch-hhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccc
Q 038265 719 LNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELP-QWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSC 797 (883)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c 797 (883)
. ....+|+.|+++++. +..++ ..+ ..+++|++|++++|......+..+..+++|++|+|++|
T Consensus 189 ~--------------~~~~~L~~L~l~~n~-i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 189 K--------------DLPETLNELHLDHNK-IQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp S--------------SSCSSCSCCBCCSSC-CCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred c--------------cccCCCCEEECCCCc-CCccCHHHh--cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 0 011345555555542 23222 222 34555555555555443333334555555555555555
Q ss_pred cccccCCCCCCCCCCcCeeeccCCc
Q 038265 798 PKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 798 ~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
. +..+|..+..+++|+.|++++|+
T Consensus 252 ~-l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 252 K-LSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp C-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred c-CeecChhhhcCccCCEEECCCCC
Confidence 4 33555555555555555555554
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=2.4e-21 Score=225.30 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=104.7
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCCceEecccCCccccccCccccCCCcccE
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQT 611 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 611 (883)
++++.|.+..+. .....+..|.++++|++|++++|.+..+ |..+.++++|++|++++|. +..+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNS---ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSE
T ss_pred CCcCEEECCCCC---ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCE
Confidence 689999997433 3344456789999999999999999887 5679999999999999997 6688886 8999999
Q ss_pred eecCCCCCCc-cCCccccCCcccCEEEeCCccccccccccCCCCCC--CeEEeecCCC
Q 038265 612 LNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSL--RFLMISDCGN 666 (883)
Q Consensus 612 L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 666 (883)
|++++|...+ .+|..++++++|++|++++|.+.. ..+..+++| +.|++++|..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 9999987655 356899999999999999998875 345666777 9999999865
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.9e-21 Score=217.00 Aligned_cols=294 Identities=15% Similarity=0.110 Sum_probs=171.1
Q ss_pred ceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEe
Q 038265 509 SVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHL 588 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 588 (883)
.++.+.+..+..... + .+..+++|+.|.+..+..... + +..+++|++|++++|.+..+| ++++++|++|
T Consensus 43 ~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~----~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL----D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp TCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC----C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE----c--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 445555544433221 1 345566666666653332221 1 556666666666666666654 5666666666
Q ss_pred cccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccc-cccccccCCCCCCCeEEeecCCCc
Q 038265 589 DLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQK-SLLESGIGCLSSLRFLMISDCGNL 667 (883)
Q Consensus 589 ~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~ 667 (883)
++++|. +..+| ++.+++|++|++++|...+ +| ++.+++|++|++++|.. ..+ .+..+++|+.|++++|..
T Consensus 112 ~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l- 182 (457)
T 3bz5_A 112 NCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI- 182 (457)
T ss_dssp ECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-
T ss_pred ECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-
Confidence 666665 33344 5666666666666654433 32 56666666666666632 222 355666677777766543
Q ss_pred cccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccC
Q 038265 668 EYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAEL 747 (883)
Q Consensus 668 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 747 (883)
+.+| ++.+++|+.|++++|.... + .+..+++|+.|++++|..-... .....+|+.|++++|
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~ip--------------~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTEID--------------VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSCCC--------------CTTCTTCSEEECCSS
T ss_pred ceec--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccccC--------------ccccCCCCEEEeeCC
Confidence 3343 5666677777776665433 2 2566677777777766432210 123347788888776
Q ss_pred CCCccchhhhhcCCCC----------CccEEeecCCCCCccCCccCCCCccccccccccccccccCCCC--------CCC
Q 038265 748 TQLLELPQWLLQGSSK----------TLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEG--------MHH 809 (883)
Q Consensus 748 ~~l~~l~~~~~~~~~~----------~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~--------l~~ 809 (883)
.+..+|. ..++ +|+.|++++|..+..+| ...+++|+.|++++|+.++.+|.. +.+
T Consensus 244 -~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 244 -PLTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp -CCSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred -cCCCcCH----HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 3444442 2233 44455556665555555 456788999999998877776642 233
Q ss_pred CCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchh
Q 038265 810 LTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSD 856 (883)
Q Consensus 810 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 856 (883)
+++|+.|++++|. ..+-.+..++++..+++.+|.+..+.
T Consensus 317 ~~~L~~L~L~~N~--------l~~l~l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 317 NPKLVYLYLNNTE--------LTELDVSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp CTTCCEEECTTCC--------CSCCCCTTCTTCSEEECCSSCCCBCT
T ss_pred cccCCEEECCCCc--------ccccccccCCcCcEEECCCCCCCCcc
Confidence 4455555555542 22224667788999999999998753
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2.7e-21 Score=219.25 Aligned_cols=313 Identities=19% Similarity=0.232 Sum_probs=161.7
Q ss_pred cceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceE
Q 038265 508 KSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRH 587 (883)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 587 (883)
+.++.+.+..+..... +. +..+++|+.|.+..+.... ..+ +.++++|++|++++|.+..+|. +.++++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~---~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIAD---ITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp TTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred cCCCEEECCCCccCCc--hh-hhccccCCEEECCCCcccc---Chh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 3556665554443322 12 5666777777775332221 111 5677777777777777776654 677777777
Q ss_pred ecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCc
Q 038265 588 LDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNL 667 (883)
Q Consensus 588 L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 667 (883)
|++++|. +..+|. ++.+++|++|++++ . ...++ .+.++++|+.|++++|.+..++ .+..+++|++|++++|...
T Consensus 139 L~l~~n~-l~~~~~-~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 139 LELSSNT-ISDISA-LSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEEEEE-ECCCGG-GTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred EECCCCc-cCCChh-hccCCcccEeecCC-c-ccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccc
Confidence 7777765 334443 45555555555532 1 11222 2555555666666655555443 3455555555555554432
Q ss_pred cccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCcccc-----------ccccCCCCCCCCC
Q 038265 668 EYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEM-----------EEEGSHHDCNNVR 736 (883)
Q Consensus 668 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~ 736 (883)
...+ ++.+++|+.|++++|... .++ .+..+++|+.|++++|........... ... .. ......
T Consensus 213 ~~~~--~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l 286 (466)
T 1o6v_A 213 DITP--LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NI-SPLAGL 286 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CC-GGGTTC
T ss_pred cccc--ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC-cc-ccccCC
Confidence 2211 444555555555554322 222 244445555555554432211100000 000 00 001123
Q ss_pred CCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCee
Q 038265 737 SHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTL 816 (883)
Q Consensus 737 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L 816 (883)
.+|+.|++++| .+..++. + ..+++|+.|++++|......| +..+++|+.|++++|... .++ .+..+++|+.|
T Consensus 287 ~~L~~L~L~~n-~l~~~~~-~--~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L 358 (466)
T 1o6v_A 287 TALTNLELNEN-QLEDISP-I--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVS-SLANLTNINWL 358 (466)
T ss_dssp TTCSEEECCSS-CCSCCGG-G--GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEE
T ss_pred CccCeEEcCCC-cccCchh-h--cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC-Cch-hhccCCCCCEE
Confidence 46666666665 3444443 2 456677777777765443333 556677777777776533 333 46677777777
Q ss_pred eccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchh
Q 038265 817 AIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSD 856 (883)
Q Consensus 817 ~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 856 (883)
++++|+..... ....++++..+++++|.+....
T Consensus 359 ~l~~n~l~~~~-------~~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 359 SAGHNQISDLT-------PLANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp ECCSSCCCBCG-------GGTTCTTCCEEECCCEEEECCC
T ss_pred eCCCCccCccc-------hhhcCCCCCEEeccCCcccCCc
Confidence 77777532111 1445677778888888777643
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.9e-21 Score=215.27 Aligned_cols=290 Identities=17% Similarity=0.147 Sum_probs=215.4
Q ss_pred cceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccccc-ccCCCCCce
Q 038265 508 KSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPR-KMGNLRQLR 586 (883)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~ 586 (883)
..++.+.+..+..... ....+..+++|+.|.+..+. .....+..|..+++|++|++++|.+..+|. .++++++|+
T Consensus 45 ~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchhhC-ChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4567777765543221 12335667899999997433 333445568899999999999999998754 589999999
Q ss_pred EecccCCccccccCcc-ccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCC
Q 038265 587 HLDLSGNRKIKKLPNS-ICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCG 665 (883)
Q Consensus 587 ~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 665 (883)
+|++++|. +..+|.. +.++++|++|++++|...+..|..+..+++|++|++++|.+...+ +..+++|+.|++++|.
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence 99999987 5677765 588999999999998777666778999999999999999988653 4556666666666543
Q ss_pred Cc------------------cccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCcccccccc
Q 038265 666 NL------------------EYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEG 727 (883)
Q Consensus 666 ~~------------------~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 727 (883)
.. ..++. ..+++|+.|++++|.... . ..+..+++|+.|++++|.......
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~-------- 265 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMY-------- 265 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEES--------
T ss_pred ccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcCh--------
Confidence 21 11221 224578888888776543 2 457788899999998886433211
Q ss_pred CCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCC
Q 038265 728 SHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGM 807 (883)
Q Consensus 728 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l 807 (883)
.......+|+.|++++| .+..+|... ..+++|++|++++|. +..+|..+..+++|++|+|++|+. ..+| +
T Consensus 266 ---~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i-~~~~--~ 335 (390)
T 3o6n_A 266 ---HPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI-VTLK--L 335 (390)
T ss_dssp ---GGGTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC-CCCC--C
T ss_pred ---hHccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCcc-ceeC--c
Confidence 11223458999999997 567777665 678999999999995 567888888899999999999984 4555 6
Q ss_pred CCCCCcCeeeccCCcchhh
Q 038265 808 HHLTTLKTLAIEECPALCE 826 (883)
Q Consensus 808 ~~l~~L~~L~l~~c~~l~~ 826 (883)
..+++|+.|++++||.-..
T Consensus 336 ~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 336 STHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CTTCCCSEEECCSSCEEHH
T ss_pred hhhccCCEEEcCCCCccch
Confidence 7889999999999986543
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=3.8e-21 Score=233.99 Aligned_cols=316 Identities=16% Similarity=0.118 Sum_probs=245.8
Q ss_pred CCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcc-cccc-ccccCCCCCceEecccCCccccccCccccCCCcc
Q 038265 532 LGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSA-IEVL-PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSL 609 (883)
Q Consensus 532 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 609 (883)
.++++.|.+..+. .....+..|.++++|++|+|++|. +..+ |..+.++++|++|+|++|.+....|..++++++|
T Consensus 23 p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 4688999998433 334445668999999999999994 4566 6789999999999999998766779999999999
Q ss_pred cEeecCCCCCCccCCcc--ccCCcccCEEEeCCcccccc--ccccCCCCCCCeEEeecCCCccccccccccC--ccccee
Q 038265 610 QTLNLGDCLELEELPKD--IRYLVSLRMFVVTTKQKSLL--ESGIGCLSSLRFLMISDCGNLEYLFEDIDQL--SVLRSL 683 (883)
Q Consensus 610 ~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L 683 (883)
++|+|++|...+.+|.. +.++++|++|++++|.+... +..++++++|++|++++|......+..+..+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 99999999887777765 89999999999999999854 3568999999999999987766667777777 899999
Q ss_pred eeccccCCCCCcccCCCCCC------ccEEEeccCCCCccCCcccccc---------------------------ccCCC
Q 038265 684 VINSCPRLISLPPAMKYLSS------LETLILLKCESLDLNLNMEMEE---------------------------EGSHH 730 (883)
Q Consensus 684 ~l~~~~~~~~l~~~l~~l~~------L~~L~L~~~~~l~~~~~~~~~~---------------------------~~~~~ 730 (883)
++++|......|..+..+++ |+.|++++|............. .....
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 99999888877777766665 9999999884321111000000 00000
Q ss_pred CCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCC
Q 038265 731 DCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHL 810 (883)
Q Consensus 731 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l 810 (883)
.......+|+.|+++++......+..+ ..+++|+.|+|++|......|..+..+++|++|+|++|......|..+..+
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 001113589999999975443344444 678999999999998777778889999999999999998777778889999
Q ss_pred CCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 811 TTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 811 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
++|+.|++++|.. .......+..++++..+++.+|.+..+..
T Consensus 338 ~~L~~L~L~~N~i-----~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 338 PKVAYIDLQKNHI-----AIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp TTCCEEECCSCCC-----CCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred CCCCEEECCCCCC-----CccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 9999999999853 23334456778999999999999987654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.5e-21 Score=228.31 Aligned_cols=286 Identities=17% Similarity=0.165 Sum_probs=219.5
Q ss_pred cCCcccEEEecCccccccccc-cCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEE
Q 038265 558 KSKSLRVLVLMNSAIEVLPRK-MGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 636 (883)
Q Consensus 558 ~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 636 (883)
.+.+++.|+++++.+..+|.. +.++++|++|++++|.+.+..|..++.+++|++|+|++|...+..|..++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 367899999999999999876 5789999999999998655556689999999999999988777667778999999999
Q ss_pred EeCCccccccccc-cCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCC
Q 038265 637 VVTTKQKSLLESG-IGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESL 715 (883)
Q Consensus 637 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l 715 (883)
++++|.+..+|.. ++.+++|++|++++|......|..++.+++|+.|++++|.... ++ +..+++|+.|++++|..-
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCccc
Confidence 9999999977765 5899999999999987766666789999999999999987544 33 445677888888776432
Q ss_pred ccCCccccccc---cC--CCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccc
Q 038265 716 DLNLNMEMEEE---GS--HHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALE 790 (883)
Q Consensus 716 ~~~~~~~~~~~---~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 790 (883)
........... .. .........+|+.|++++|. +... .++ ..+++|+.|+|++|......|..+..+++|+
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~-~~l--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT-AWL--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCC-GGG--GGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCC-hhh--ccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 21110000000 00 00001122478999999874 4444 334 5789999999999987777788999999999
Q ss_pred ccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 791 NLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 791 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
.|+|++|. +..+|..+..+++|+.|++++|+... ....+..+++|..|++.+|.+.....
T Consensus 282 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 282 RLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLH------VERNQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp EEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCC------CGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred EEECCCCC-CCCCCcccccCCCCcEEECCCCCCCc------cCcccccCCCCCEEECCCCCCCCcCh
Confidence 99999987 45577777889999999999996421 11223567899999999999987753
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=6e-21 Score=215.44 Aligned_cols=245 Identities=18% Similarity=0.114 Sum_probs=167.3
Q ss_pred ccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCc
Q 038265 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 641 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 641 (883)
...++.++..+..+|..+. ++|++|+|++|.+....|..+.++++|++|+|++|...+..|..+..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4556666667777776553 46777777777654455666777777777777776555555566777777777777777
Q ss_pred ccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcc-cCCCCCCccEEEeccCCCCccCC
Q 038265 642 QKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPP-AMKYLSSLETLILLKCESLDLNL 719 (883)
Q Consensus 642 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~l~~~~ 719 (883)
.+..++. .+..+++|++|++++|......+..+..+++|+.|++++|+.++.++. .+..+++|+.|++++|..-....
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence 7765543 366677777777777654433334566777777777777666666554 46677777777777764332210
Q ss_pred ccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccc
Q 038265 720 NMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPK 799 (883)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~ 799 (883)
.....+|+.|++++|......|..+ ..+++|+.|++++|......|..+..+++|+.|+|++|..
T Consensus 214 -------------~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 214 -------------LTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp -------------CTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -------------ccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 2233467777777764333335555 6788999999999987777778888999999999999875
Q ss_pred cccCCCCCCCCCCcCeeeccCCcc
Q 038265 800 LSSLPEGMHHLTTLKTLAIEECPA 823 (883)
Q Consensus 800 l~~lp~~l~~l~~L~~L~l~~c~~ 823 (883)
....+..+..+++|+.|++++||.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CccChHHhccccCCCEEEccCCCc
Confidence 544445567889999999999874
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=8.1e-21 Score=215.27 Aligned_cols=278 Identities=17% Similarity=0.179 Sum_probs=172.1
Q ss_pred cceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceE
Q 038265 508 KSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRH 587 (883)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 587 (883)
..++.+.+..+..... +. +..+++|+.|.+..+..... . .+.++++|++|++++|.+..++. +..+++|++
T Consensus 90 ~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~---~--~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 160 (466)
T 1o6v_A 90 TKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITDI---D--PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQ 160 (466)
T ss_dssp TTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC---G--GGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSE
T ss_pred ccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCCCCCC---h--HHcCCCCCCEEECCCCccCCChh-hccCCcccE
Confidence 4677777765544332 22 78899999999975433322 1 27899999999999999887753 555555555
Q ss_pred ecc---------------------cCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccccc
Q 038265 588 LDL---------------------SGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL 646 (883)
Q Consensus 588 L~l---------------------~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 646 (883)
|++ ++|. +..++. +..+++|++|++++|...+..| ++.+++|+.|++++|.+..+
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred eecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence 555 4443 222222 4444455555554443322222 44455555555555554443
Q ss_pred ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccc
Q 038265 647 ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEE 726 (883)
Q Consensus 647 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 726 (883)
+ .+..+++|+.|++++|.... ++. +..+++|+.|++++|.... ++. +..+++|+.|++++|..-....
T Consensus 237 ~-~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~------- 304 (466)
T 1o6v_A 237 G-TLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP------- 304 (466)
T ss_dssp G-GGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG-------
T ss_pred h-hhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh-------
Confidence 2 34455555555555544322 222 5555666666665554332 232 5556666666666654322110
Q ss_pred cCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCC
Q 038265 727 GSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEG 806 (883)
Q Consensus 727 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~ 806 (883)
.....+|+.|++++|. +..++. + ..+++|+.|++++|.. ..+ ..+..+++|+.|++++|+..+..|
T Consensus 305 ------~~~l~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l~~~~~-- 370 (466)
T 1o6v_A 305 ------ISNLKNLTYLTLYFNN-ISDISP-V--SSLTKLQRLFFYNNKV-SDV-SSLANLTNINWLSAGHNQISDLTP-- 370 (466)
T ss_dssp ------GGGCTTCSEEECCSSC-CSCCGG-G--GGCTTCCEEECCSSCC-CCC-GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred ------hcCCCCCCEEECcCCc-CCCchh-h--ccCccCCEeECCCCcc-CCc-hhhccCCCCCEEeCCCCccCccch--
Confidence 2234589999999984 555544 3 5789999999999964 444 368899999999999998766665
Q ss_pred CCCCCCcCeeeccCCcch
Q 038265 807 MHHLTTLKTLAIEECPAL 824 (883)
Q Consensus 807 l~~l~~L~~L~l~~c~~l 824 (883)
+..+++|+.|++++|+..
T Consensus 371 ~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GTTCTTCCEEECCCEEEE
T ss_pred hhcCCCCCEEeccCCccc
Confidence 789999999999999753
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=225.70 Aligned_cols=170 Identities=19% Similarity=0.120 Sum_probs=106.9
Q ss_pred CCCCCCeEEeecCCCccc--cccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCcc--------
Q 038265 652 CLSSLRFLMISDCGNLEY--LFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNM-------- 721 (883)
Q Consensus 652 ~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~-------- 721 (883)
.+++|+.|++++|..... .+..+..+++|+.|++++|.... +|..+..+++|+.|++++|.........
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 345555555555442221 13445556666666666554322 2222445555555555544322111000
Q ss_pred ------ccccccCCCCCCCCCCCcceEEeccCCCC-ccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccccc
Q 038265 722 ------EMEEEGSHHDCNNVRSHLRTLCVAELTQL-LELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLI 794 (883)
Q Consensus 722 ------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 794 (883)
........+.......+|+.|++++|... ..+|..+ ..+++|++|++++|......|..+..+++|++|+|
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 00000111122334568999999998543 3577666 78899999999999877777889999999999999
Q ss_pred ccccccccCCCCCCCCCCcCeeeccCCcch
Q 038265 795 TSCPKLSSLPEGMHHLTTLKTLAIEECPAL 824 (883)
Q Consensus 795 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 824 (883)
++|......|..+.++++|+.|++++||..
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 999876666667899999999999999854
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=2.2e-21 Score=218.02 Aligned_cols=279 Identities=15% Similarity=0.112 Sum_probs=213.3
Q ss_pred cceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceE
Q 038265 508 KSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRH 587 (883)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 587 (883)
+.++.+.+..+..... .+..+++|+.|.+..+..... .+..+++|++|++++|.+..+| ++.+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee------ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 4577777766554432 267889999999985443322 1788999999999999999886 889999999
Q ss_pred ecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCc
Q 038265 588 LDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNL 667 (883)
Q Consensus 588 L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 667 (883)
|++++|. +..+| ++.+++|++|++++|..++.+ .+..+++|+.|++++|.+..+| +..+++|+.|++++|...
T Consensus 132 L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 132 LNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred EECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 9999987 44454 889999999999998777777 4788999999999999999876 889999999999997644
Q ss_pred cccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccC
Q 038265 668 EYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAEL 747 (883)
Q Consensus 668 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 747 (883)
. + .++.+++|+.|++++|...+ +| +..+++|+.|++++|..-....... ...........+|+.|++++|
T Consensus 205 ~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l----~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 205 K-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL----SKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp C-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC----TTCCEEECTTCCCSCCCCTTC
T ss_pred e-e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC----CCCCEEeccCCCCCEEECCCC
Confidence 3 4 48899999999999987654 66 7899999999999986443221000 000000011126777788888
Q ss_pred CCCccchhhhhcCCCCCccEEeecCCCCCccCCcc--------CCCCccccccccccccccccCCCCCCCCCCcCeeecc
Q 038265 748 TQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRS--------LKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIE 819 (883)
Q Consensus 748 ~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~--------~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~ 819 (883)
..+..+|. ..+++|+.|++++|..++.+|.. +..+++|+.|++++|.... ++ +.++++|+.|+++
T Consensus 275 ~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 275 TQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCV 347 (457)
T ss_dssp TTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECC
T ss_pred ccCCcccc----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECC
Confidence 77777762 56799999999999877766542 4567888888888887544 54 8899999999999
Q ss_pred CCc
Q 038265 820 ECP 822 (883)
Q Consensus 820 ~c~ 822 (883)
+|.
T Consensus 348 ~N~ 350 (457)
T 3bz5_A 348 NAH 350 (457)
T ss_dssp SSC
T ss_pred CCC
Confidence 885
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=212.81 Aligned_cols=244 Identities=17% Similarity=0.140 Sum_probs=158.6
Q ss_pred ccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCc
Q 038265 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 641 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 641 (883)
...++.++..+..+|..+. .++++|+|++|.+....+..+.++++|++|+|++|......|..+..+++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4456666666666666554 46666777766544444455666677777777666554444456666677777777776
Q ss_pred ccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcc-cCCCCCCccEEEeccCCCCccCC
Q 038265 642 QKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPP-AMKYLSSLETLILLKCESLDLNL 719 (883)
Q Consensus 642 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~l~~~~ 719 (883)
.+..++. .+..+++|++|++++|......+..+..+++|+.|++++|+.+..++. .+..+++|++|++++|..-.+..
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 6665543 466667777777766554333334566667777777766665555544 46666777777776664332210
Q ss_pred ccccccccCCCCCCCCCCCcceEEeccCCCCccc-hhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccccccccc
Q 038265 720 NMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLEL-PQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCP 798 (883)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~ 798 (883)
.....+|+.|++++| .+..+ |..+ ..+++|+.|+|++|......+..+..+++|+.|+|++|.
T Consensus 203 -------------~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 203 -------------LTPLIKLDELDLSGN-HLSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp -------------CTTCSSCCEEECTTS-CCCEECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred -------------cCCCcccCEEECCCC-ccCccChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 222346777777776 34444 4444 677899999999987766667788889999999999987
Q ss_pred ccccCCCCCCCCCCcCeeeccCCcc
Q 038265 799 KLSSLPEGMHHLTTLKTLAIEECPA 823 (883)
Q Consensus 799 ~l~~lp~~l~~l~~L~~L~l~~c~~ 823 (883)
.....+..+..+++|+.|++++||.
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCccChhHhccccCCCEEEcCCCCc
Confidence 6554455667889999999998885
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=6.6e-21 Score=227.35 Aligned_cols=259 Identities=15% Similarity=0.049 Sum_probs=171.2
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCCceEecccCCccccccCc-cccCCCccc
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQLRHLDLSGNRKIKKLPN-SICELQSLQ 610 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~ 610 (883)
++++.|.+..+. .....+..|.++++|++|++++|.+..+ |..++++++|++|++++|. +..+|. .++++++|+
T Consensus 25 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCC
Confidence 678999987433 3334456688999999999999999876 5668899999999999987 556665 699999999
Q ss_pred EeecCCCCCCccCCccccCCcccCEEEeCCcccccc-ccccCCCCCCCeEEeecCCCccccccccc--cCcccceeeecc
Q 038265 611 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMISDCGNLEYLFEDID--QLSVLRSLVINS 687 (883)
Q Consensus 611 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~ 687 (883)
+|++++|...+..|..++++++|++|++++|.+... +..+..+++|++|++++|......+..++ .+++|+.|++++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999999876655567899999999999999988744 55688999999999999865444444433 568999999999
Q ss_pred ccCCCCCcccCCCCCCccEEEeccCCCCc----------------cCCccccccccCCCCCCCC--CCCcceEEeccCCC
Q 038265 688 CPRLISLPPAMKYLSSLETLILLKCESLD----------------LNLNMEMEEEGSHHDCNNV--RSHLRTLCVAELTQ 749 (883)
Q Consensus 688 ~~~~~~l~~~l~~l~~L~~L~L~~~~~l~----------------~~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~ 749 (883)
|...+..|..+..+++|+.|++.++..-. ..........+..+..... ..+|+.|++++|..
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 87766666667666666666555432100 0000000000000000011 12366677766532
Q ss_pred CccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccc
Q 038265 750 LLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSC 797 (883)
Q Consensus 750 l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c 797 (883)
....|..+ ..+++|++|++++|......|..+..+++|+.|++++|
T Consensus 261 ~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 261 NVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CEECTTTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CccCcccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 22223333 45666666666666554444444555555555555443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.1e-21 Score=206.07 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=137.7
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCCceEecccCCccccccCccccCCCcccE
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQT 611 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 611 (883)
++++.|.+..+. .....+..|.++++|++|++++|.+..+ |..+.++++|++|++++|. +..+|..+. ++|++
T Consensus 54 ~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCE
T ss_pred CCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCE
Confidence 578888887433 2334455688999999999999999877 6789999999999999986 668887665 89999
Q ss_pred eecCCCCCCccCCccccCCcccCEEEeCCcccc---ccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccc
Q 038265 612 LNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS---LLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSC 688 (883)
Q Consensus 612 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (883)
|++++|......+..+..+++|+.|++++|.+. ..+..+..+ +|+.|++++|. +..+|..+. ++|+.|++++|
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCC
Confidence 999997665544456899999999999999886 445567777 99999999876 445666554 79999999998
Q ss_pred cCCCCCcccCCCCCCccEEEeccCCC
Q 038265 689 PRLISLPPAMKYLSSLETLILLKCES 714 (883)
Q Consensus 689 ~~~~~l~~~l~~l~~L~~L~L~~~~~ 714 (883)
......+..+..+++|+.|++++|..
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcC
Confidence 87666667899999999999998753
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.1e-20 Score=203.86 Aligned_cols=269 Identities=15% Similarity=0.168 Sum_probs=191.1
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc-ccccCCCCCceEecccCCccccccCccccCCCcccE
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL-PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQT 611 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 611 (883)
++++.|.+..+. .....+..|.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+|..+. ++|++
T Consensus 52 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCE
T ss_pred CCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccE
Confidence 577888886433 2333445688899999999999999877 7789999999999999987 667887665 79999
Q ss_pred eecCCCCCCccCCccccCCcccCEEEeCCcccc---ccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccc
Q 038265 612 LNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS---LLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSC 688 (883)
Q Consensus 612 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (883)
|++++|...+..+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.. ..+|..+. ++|+.|++++|
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l~~n 202 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGN 202 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCC--TTCSEEECTTS
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCcccc--ccCCEEECCCC
Confidence 999998766666667899999999999999886 4456788899999999998754 45665543 89999999998
Q ss_pred cCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEE
Q 038265 689 PRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQML 768 (883)
Q Consensus 689 ~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L 768 (883)
......|..+..+++|+.|++++|...... +..+ ..+++|++|
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------------------~~~~--~~l~~L~~L 245 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVD-----------------------------------NGSL--ANTPHLREL 245 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEEC-----------------------------------TTTG--GGSTTCCEE
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeC-----------------------------------hhhc--cCCCCCCEE
Confidence 876666788999999999999987432211 0111 345667777
Q ss_pred eecCCCCCccCCccCCCCccccccccccccccccCCCCCC------CCCCcCeeeccCCcchhhhhCCCCCCCCCccCCC
Q 038265 769 TIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMH------HLTTLKTLAIEECPALCERCKPLTGEDWPKIAHI 842 (883)
Q Consensus 769 ~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l 842 (883)
++++|. +..+|..+..+++|++|++++|+....-+..+. ..++|+.|++.+||..... .....+..+.++
T Consensus 246 ~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~---i~~~~f~~~~~l 321 (330)
T 1xku_A 246 HLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE---IQPSTFRCVYVR 321 (330)
T ss_dssp ECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG---SCGGGGTTCCCG
T ss_pred ECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc---cCccccccccce
Confidence 777764 446676777777777777777764332222222 2366777777777743211 112335556667
Q ss_pred CeeeeCCCc
Q 038265 843 PQIDLDGEM 851 (883)
Q Consensus 843 ~~l~l~~n~ 851 (883)
..+++.+|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 777777663
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=2e-21 Score=225.69 Aligned_cols=177 Identities=21% Similarity=0.199 Sum_probs=134.3
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccc-cccCCCCCceEecccCCccccccCccccCCCcccE
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLP-RKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQT 611 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 611 (883)
+++++|.+..+. .....+..|.++++|++|++++|.+..++ ..+.++++|++|++++|.+.+..|..++++++|++
T Consensus 26 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 578999987433 23334456889999999999999998776 57899999999999999855555556999999999
Q ss_pred eecCCCCCCc-cCCccccCCcccCEEEeCCcc-ccccc-cccCCCCCCCeEEeecCCCccccccccccCcccceeeeccc
Q 038265 612 LNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQ-KSLLE-SGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSC 688 (883)
Q Consensus 612 L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (883)
|++++|...+ ..|..+.++++|++|++++|. +..+| ..+..+++|++|++++|......|..++.+++|+.|++++|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999987655 467789999999999999997 45444 57899999999999998877667777777777777777665
Q ss_pred cCCCCCccc-CCCCCCccEEEeccCC
Q 038265 689 PRLISLPPA-MKYLSSLETLILLKCE 713 (883)
Q Consensus 689 ~~~~~l~~~-l~~l~~L~~L~L~~~~ 713 (883)
.. ..+|.. +..+++|++|++++|.
T Consensus 183 ~~-~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 183 ES-AFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp BS-TTHHHHHHHSTTTBSEEEEESCB
T ss_pred cc-cccchhhHhhcccccEEEccCCc
Confidence 43 223322 2335555555555543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.6e-20 Score=200.36 Aligned_cols=225 Identities=23% Similarity=0.191 Sum_probs=122.2
Q ss_pred CcccEEEecCccccccccc-cCCCCCceEecccCCcccc--ccCccccCCCcccEeecCCCCCCccCCccccCCcccCEE
Q 038265 560 KSLRVLVLMNSAIEVLPRK-MGNLRQLRHLDLSGNRKIK--KLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 636 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 636 (883)
++|++|++++|.+..+|.. +.++++|++|++++|.... ..|..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 3455555555555555443 3455555555555544221 113334445555555555432 23344445555555555
Q ss_pred EeCCccccccc--cccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCC-CCcccCCCCCCccEEEeccCC
Q 038265 637 VVTTKQKSLLE--SGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLI-SLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 637 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~L~L~~~~ 713 (883)
++++|.+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|.... .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 55555544333 234445555555555544333333444455555555555444332 234444445555555554432
Q ss_pred CCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccc-hhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccc
Q 038265 714 SLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLEL-PQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENL 792 (883)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 792 (883)
+..+ |..+ ..+++|++|++++|......+..+..+++|+.|
T Consensus 187 ------------------------------------l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 187 ------------------------------------LEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp ------------------------------------CCEECTTTT--TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred ------------------------------------cCCcCHHHh--cCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 2222 3333 566788888888886555445567778888888
Q ss_pred ccccccccccCCCCCCCCC-CcCeeeccCCcc
Q 038265 793 LITSCPKLSSLPEGMHHLT-TLKTLAIEECPA 823 (883)
Q Consensus 793 ~L~~c~~l~~lp~~l~~l~-~L~~L~l~~c~~ 823 (883)
+|++|......|..+..++ +|+.|++++||.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 8888887777777777774 888888888774
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=7.4e-20 Score=216.70 Aligned_cols=342 Identities=15% Similarity=0.133 Sum_probs=227.2
Q ss_pred CCCCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccccc-ccCCC
Q 038265 504 QSIPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPR-KMGNL 582 (883)
Q Consensus 504 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l 582 (883)
..+|.+++.+.+..+.+. .-.+..|..+++|+.|.+..+. .....+..|.++++|++|+|++|.++.+|. .|.++
T Consensus 48 ~~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 457788899887665543 2234568889999999997433 334455678899999999999999998875 47899
Q ss_pred CCceEecccCCccccccCccccCCCcccEeecCCCCCCc-cCCccccCCcccCEEEeCCccccccc-cccC---------
Q 038265 583 RQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQKSLLE-SGIG--------- 651 (883)
Q Consensus 583 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~--------- 651 (883)
++|++|++++|.+.+..+..++++++|++|++++|.... .+|..+..+++|++|++++|.+..++ ..+.
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999999987444334468899999999999876544 46788889999999999887654211 0000
Q ss_pred --------------------------------------------------------------------------------
Q 038265 652 -------------------------------------------------------------------------------- 651 (883)
Q Consensus 652 -------------------------------------------------------------------------------- 651 (883)
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence
Q ss_pred ------------------------------------------CCCCCCeEEeecCCCccc-------------------c
Q 038265 652 ------------------------------------------CLSSLRFLMISDCGNLEY-------------------L 670 (883)
Q Consensus 652 ------------------------------------------~l~~L~~L~l~~~~~~~~-------------------~ 670 (883)
...+|+.|++.+|..... .
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 001122222222210000 0
Q ss_pred ccccccCcccceeeeccccCCC-------------------------CCcccCCCCCCccEEEeccCCCCccCCccc---
Q 038265 671 FEDIDQLSVLRSLVINSCPRLI-------------------------SLPPAMKYLSSLETLILLKCESLDLNLNME--- 722 (883)
Q Consensus 671 ~~~l~~l~~L~~L~l~~~~~~~-------------------------~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~--- 722 (883)
+.....+++|+.|++++|.... .++..+..+++|+.+++..+..........
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 0112245677777777654311 123445677888888887665332221100
Q ss_pred -----------cccccCCCCCCCCCCCcceEEeccCCCCcc-chhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccc
Q 038265 723 -----------MEEEGSHHDCNNVRSHLRTLCVAELTQLLE-LPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALE 790 (883)
Q Consensus 723 -----------~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 790 (883)
................|+.|++++|..... .|..+ ..+++|++|+|++|......|..+..+++|+
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~--~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--hhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 000111112223345888999998865554 34444 6789999999999987667788899999999
Q ss_pred ccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCcc-CCCCeeeeCCCcccchh
Q 038265 791 NLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKI-AHIPQIDLDGEMIKSSD 856 (883)
Q Consensus 791 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~l~~l~l~~n~i~~~~ 856 (883)
+|+|++|......|..+.++++|+.|++++|.... .....+..+ ++++.+++.+|++..--
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB-----CCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC-----CCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999998655556678899999999999985322 222334444 67999999999988643
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=5.2e-21 Score=208.52 Aligned_cols=250 Identities=20% Similarity=0.229 Sum_probs=158.6
Q ss_pred CcccEEEecCcccccccc-ccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCcc-ccCCcccCEEE
Q 038265 560 KSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKD-IRYLVSLRMFV 637 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~ 637 (883)
++|++|++++|.+..+|. .+.++++|++|++++|...+..|..++++++|++|++++|... .+|.. +..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 467888888888877765 5777888888888877654444566777888888888776544 44443 67788888888
Q ss_pred eCCcccccccc--ccCCCCCCCeEEeecCCCcccc-ccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCC
Q 038265 638 VTTKQKSLLES--GIGCLSSLRFLMISDCGNLEYL-FEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCES 714 (883)
Q Consensus 638 l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~ 714 (883)
+++|.+..+|. .+..+++|++|++++|..++.+ +..++.+++|+.|++++|......|..+..+++|++|++++|..
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 88887776665 5677888888888877555544 35677778888888887776666677777778888888877653
Q ss_pred CccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhh-h-hcCCCCCccEEeecCCCCCc----cCCccCCCCcc
Q 038265 715 LDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQW-L-LQGSSKTLQMLTIGDCPNFM----ALPRSLKDLEA 788 (883)
Q Consensus 715 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~-~~~~~~~L~~L~l~~~~~l~----~lp~~~~~l~~ 788 (883)
-...... .....+|+.|++++|. +..++.. + .....+.++.++++++.... .+|..+..+++
T Consensus 211 ~~~~~~~-----------~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 211 ILLLEIF-----------VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp TTHHHHH-----------HHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred ccchhhh-----------hhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 2111000 0112356666666653 2222110 0 01234556666666654332 34555666677
Q ss_pred ccccccccccccccCCCCC-CCCCCcCeeeccCCcc
Q 038265 789 LENLLITSCPKLSSLPEGM-HHLTTLKTLAIEECPA 823 (883)
Q Consensus 789 L~~L~L~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~ 823 (883)
|+.|+|++|.. ..+|..+ ..+++|+.|++++||.
T Consensus 279 L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 279 LLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCCc
Confidence 77777777653 3566553 6667777777776653
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=4.4e-20 Score=194.70 Aligned_cols=224 Identities=17% Similarity=0.143 Sum_probs=160.2
Q ss_pred ccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCc
Q 038265 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 641 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 641 (883)
-+.++.+++.+..+|..+ .++|++|++++|.+....+..+.++++|++|++++|...+..|..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367788888888887654 458888888888744444456788888888888887666555777888888888888888
Q ss_pred c-cccc-ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCC
Q 038265 642 Q-KSLL-ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNL 719 (883)
Q Consensus 642 ~-~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~ 719 (883)
. +..+ +..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----- 165 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI----- 165 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-----
Confidence 6 6544 56677888888888888766555566677888888888888765544445577788888888877532
Q ss_pred ccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccc
Q 038265 720 NMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPK 799 (883)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~ 799 (883)
+.++...+ ..+++|++|++++|......|..+..+++|+.|++++|..
T Consensus 166 -------------------------------~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 166 -------------------------------SSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp -------------------------------CEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -------------------------------cccCHHHh-cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 22222111 4567788888888876666677778888888888888765
Q ss_pred cccCCCCCCCCCCcCeeeccCCcch
Q 038265 800 LSSLPEGMHHLTTLKTLAIEECPAL 824 (883)
Q Consensus 800 l~~lp~~l~~l~~L~~L~l~~c~~l 824 (883)
....+..+..+++|+.|++++||..
T Consensus 214 ~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CcCCHHHcccCcccCEEeccCCCcc
Confidence 4433344677888888888888753
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=3.2e-21 Score=206.54 Aligned_cols=254 Identities=15% Similarity=0.096 Sum_probs=199.3
Q ss_pred chhhhhHHhhccCCcccEEEecCccccccc-cccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCc
Q 038265 547 TSQSFVTSCISKSKSLRVLVLMNSAIEVLP-RKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPK 625 (883)
Q Consensus 547 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~ 625 (883)
.....+...+..+++|++|++++|.+..++ ..+..+++|++|++++|.+ ...++ +..+++|++|++++|.. ..+|
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~Ls~n~l-~~l~- 96 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD-LESLSTLRTLDLNNNYV-QELL- 96 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEE-ETTCTTCCEEECCSSEE-EEEE-
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-Ccchh-hhhcCCCCEEECcCCcc-cccc-
Confidence 445555666777889999999999998775 5789999999999999874 44444 88999999999998753 3443
Q ss_pred cccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccC-CCCCCc
Q 038265 626 DIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAM-KYLSSL 704 (883)
Q Consensus 626 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l-~~l~~L 704 (883)
.+++|++|++++|.+...+. ..+++|++|++++|......+..++.+++|+.|++++|......+..+ ..+++|
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ---CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 34899999999999986653 347899999999987666556678899999999999987666555555 478999
Q ss_pred cEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCC
Q 038265 705 ETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLK 784 (883)
Q Consensus 705 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~ 784 (883)
++|++++|..-.... .....+|+.|++++| .+..+|..+ ..+++|++|++++|. +..+|..+.
T Consensus 172 ~~L~L~~N~l~~~~~-------------~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N~-l~~l~~~~~ 234 (317)
T 3o53_A 172 EHLNLQYNFIYDVKG-------------QVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALR 234 (317)
T ss_dssp CEEECTTSCCCEEEC-------------CCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSC-CCEECTTCC
T ss_pred CEEECCCCcCccccc-------------ccccccCCEEECCCC-cCCcchhhh--cccCcccEEECcCCc-ccchhhHhh
Confidence 999999986433211 112458999999987 566777665 577899999999985 557888888
Q ss_pred CCcccccccccccccc-ccCCCCCCCCCCcCeeeccCCcchhh
Q 038265 785 DLEALENLLITSCPKL-SSLPEGMHHLTTLKTLAIEECPALCE 826 (883)
Q Consensus 785 ~l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~l~~ 826 (883)
.+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.++.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 9999999999999876 56777778889999999988876654
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=5.9e-19 Score=198.04 Aligned_cols=331 Identities=20% Similarity=0.211 Sum_probs=160.5
Q ss_pred CCcceEEEEEEecccccccccccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCc
Q 038265 506 IPKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQL 585 (883)
Q Consensus 506 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L 585 (883)
+|+.++.+.+..+.... ++. .+.+|+.|.+..+....... ..++|++|++++|.+..+| .++++++|
T Consensus 89 ~~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~l~~-------~~~~L~~L~L~~n~l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKALSD-------LPPLLEYLGVSNNQLEKLP-ELQNSSFL 155 (454)
T ss_dssp CCTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCCS-------CCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred CcCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCcccC-------CCCCCCEEECcCCCCCCCc-ccCCCCCC
Confidence 34566666654443322 121 23567777765332221111 1156777777777777776 47777777
Q ss_pred eEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCC
Q 038265 586 RHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCG 665 (883)
Q Consensus 586 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 665 (883)
++|++++|. +..+|..+ ++|++|++++|... .+| .++.+++|++|++++|.+..+|.. .++|++|++++|.
T Consensus 156 ~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 156 KIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI 226 (454)
T ss_dssp CEEECCSSC-CSCCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC
T ss_pred CEEECCCCc-CcccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCc
Confidence 777777765 44466532 46777777775443 355 567777777777777776655432 2467777777764
Q ss_pred CccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCcccccc----ccC-CCCCCCCCCCcc
Q 038265 666 NLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEE----EGS-HHDCNNVRSHLR 740 (883)
Q Consensus 666 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~----~~~-~~~~~~~~~~L~ 740 (883)
. ..+| .++.+++|+.|++++|.. ..+|.. +++|+.|++++|............. ... .........+|+
T Consensus 227 l-~~lp-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 227 L-EELP-ELQNLPFLTTIYADNNLL-KTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 300 (454)
T ss_dssp C-SSCC-CCTTCTTCCEEECCSSCC-SSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCC
T ss_pred C-Cccc-ccCCCCCCCEEECCCCcC-Cccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCC
Confidence 3 3555 366777777777776543 334432 3566666666654322111000000 000 000001123666
Q ss_pred eEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccC
Q 038265 741 TLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEE 820 (883)
Q Consensus 741 ~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 820 (883)
.|++++| .+..++. ..++|++|++++|.. ..+|.. +++|++|++++|. +..+|. .+++|+.|++++
T Consensus 301 ~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N~l-~~lp~~---~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 301 YLNASSN-EIRSLCD-----LPPSLEELNVSNNKL-IELPAL---PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEY 366 (454)
T ss_dssp EEECCSS-CCSEECC-----CCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCS
T ss_pred EEECcCC-cCCcccC-----CcCcCCEEECCCCcc-cccccc---CCcCCEEECCCCc-cccccc---hhhhccEEECCC
Confidence 6766665 3333331 125788888888764 446654 5889999999886 456776 468899999998
Q ss_pred CcchhhhhCCCCCCCCCcc-------------CCCCeeeeCCCcccchh-hhhhHHHhhccchhhhHHHHHhhhc
Q 038265 821 CPALCERCKPLTGEDWPKI-------------AHIPQIDLDGEMIKSSD-IQLSLERFSQTAETVSTEVQRFFNT 881 (883)
Q Consensus 821 c~~l~~~~~~~~~~~~~~~-------------~~l~~l~l~~n~i~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 881 (883)
|+...-. .....+..+ .+++.+++.+|.+...+ ...++..+..........++.|.+.
T Consensus 367 N~l~~l~---~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 367 NPLREFP---DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp SCCSSCC---CCCTTCCEEECCC----------------------------------------------------
T ss_pred CCCCcCC---CChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhheeCcCcccCCccccCHHH
Confidence 8643200 011112222 67888899999888642 2234455554444555556655543
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=5.9e-21 Score=203.99 Aligned_cols=155 Identities=18% Similarity=0.238 Sum_probs=113.0
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCcc-ccccCcccc-------CCCcccEeecCCCCCCccCCccc
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRK-IKKLPNSIC-------ELQSLQTLNLGDCLELEELPKDI 627 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~-~~~lp~~~~-------~l~~L~~L~L~~~~~~~~lp~~~ 627 (883)
++..++|+.|++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|...+.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 44567788888888888 777766544 88888888764 234565554 68888888888887777788776
Q ss_pred --cCCcccCEEEeCCccccccccccCCC-----CCCCeEEeecCCCccccccccccCcccceeeeccccCCCC--CcccC
Q 038265 628 --RYLVSLRMFVVTTKQKSLLESGIGCL-----SSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLIS--LPPAM 698 (883)
Q Consensus 628 --~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--l~~~l 698 (883)
..+++|++|++++|.+...|..+..+ ++|++|++++|......+..++.+++|+.|++++|...+. +|..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 78888888888888887666666665 7888888888766555557778888888888888775543 33333
Q ss_pred --CCCCCccEEEeccCC
Q 038265 699 --KYLSSLETLILLKCE 713 (883)
Q Consensus 699 --~~l~~L~~L~L~~~~ 713 (883)
..+++|++|++++|.
T Consensus 196 ~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAG 212 (312)
T ss_dssp CTTSCTTCCEEECTTSC
T ss_pred HhccCCCCCEEECCCCc
Confidence 677788888887764
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=3.1e-19 Score=211.37 Aligned_cols=315 Identities=18% Similarity=0.112 Sum_probs=208.1
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccccc-ccCCCCCceEecccCCccccccC-ccccCCCccc
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLP-NSICELQSLQ 610 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~ 610 (883)
.+++.|.+..+ ......+..|.++++|++|+|++|.+..+|. .|.++++|++|+|++|. +..+| ..|.++++|+
T Consensus 52 ~~~~~LdLs~N---~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFN---PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCC---CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCC
Confidence 36899999743 3344556678999999999999999999866 58999999999999997 55565 5689999999
Q ss_pred EeecCCCCCCccCCccccCCcccCEEEeCCccccc--cccccCCCCCCCeEEeecCCCcccccccccc------------
Q 038265 611 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL--LESGIGCLSSLRFLMISDCGNLEYLFEDIDQ------------ 676 (883)
Q Consensus 611 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------------ 676 (883)
+|+|++|...+..+..++++++|++|++++|.+.. .|..++.+++|++|++++|......+..+..
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 99999986655444568999999999999999874 4677889999999999887532211111100
Q ss_pred --------------------------------------------------------------------------------
Q 038265 677 -------------------------------------------------------------------------------- 676 (883)
Q Consensus 677 -------------------------------------------------------------------------------- 676 (883)
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence
Q ss_pred ---------------------------------------CcccceeeeccccCCCC-------------------CcccC
Q 038265 677 ---------------------------------------LSVLRSLVINSCPRLIS-------------------LPPAM 698 (883)
Q Consensus 677 ---------------------------------------l~~L~~L~l~~~~~~~~-------------------l~~~l 698 (883)
..+|+.|++.+|..... .+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 01122222222211000 00111
Q ss_pred CCCCCccEEEeccCCCCccCCcccc--------------ccccCCCCC-------------------------CCCCCCc
Q 038265 699 KYLSSLETLILLKCESLDLNLNMEM--------------EEEGSHHDC-------------------------NNVRSHL 739 (883)
Q Consensus 699 ~~l~~L~~L~L~~~~~l~~~~~~~~--------------~~~~~~~~~-------------------------~~~~~~L 739 (883)
..+++|+.|+++.|........... ......... .....++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 2355666666665542111000000 000000000 1112245
Q ss_pred ceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCc-cCCccCCCCccccccccccccccccCCCCCCCCCCcCeeec
Q 038265 740 RTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFM-ALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAI 818 (883)
Q Consensus 740 ~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 818 (883)
..++++.+......+..+ ..+++|+.|++++|.... ..|..+..+++|++|+|++|...+..|..+.++++|+.|+|
T Consensus 448 ~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp CEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 555555543222233333 567889999999987555 46778899999999999999877777888999999999999
Q ss_pred cCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhhh
Q 038265 819 EECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 819 ~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~ 858 (883)
++|.. .......+..++.|+.|++++|.+....+.
T Consensus 526 s~N~l-----~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 526 SHNNF-----FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp TTSCC-----CBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred CCCcC-----CCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 99842 222333466788999999999999888754
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.5e-19 Score=191.07 Aligned_cols=227 Identities=19% Similarity=0.170 Sum_probs=182.0
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccc---ccccCCCCCceEecccCCccccccCccccCCCcc
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVL---PRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSL 609 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 609 (883)
++++.|.+..+.. .......|.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+|..+..+++|
T Consensus 28 ~~l~~L~L~~n~l---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCEEECCCCcc---CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 5789998874332 344455678999999999999998765 5667789999999999987 66788889999999
Q ss_pred cEeecCCCCCCccCC-ccccCCcccCEEEeCCccccc-cccccCCCCCCCeEEeecCCCcc-ccccccccCcccceeeec
Q 038265 610 QTLNLGDCLELEELP-KDIRYLVSLRMFVVTTKQKSL-LESGIGCLSSLRFLMISDCGNLE-YLFEDIDQLSVLRSLVIN 686 (883)
Q Consensus 610 ~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~ 686 (883)
++|++++|...+..+ ..+..+++|++|++++|.+.. .+..+..+++|++|++++|.... .+|..+..+++|+.|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 999999975544333 478999999999999999884 45568899999999999987654 478889999999999999
Q ss_pred cccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchh-hhhcCCCCCc
Q 038265 687 SCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQ-WLLQGSSKTL 765 (883)
Q Consensus 687 ~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~~~L 765 (883)
+|......|..+..+++|+.|++++|.... ++. .+ ..+++|
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------------------~~~~~~--~~l~~L 225 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFS------------------------------------LDTFPY--KCLNSL 225 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSB------------------------------------CCSGGG--TTCTTC
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCc------------------------------------cChhhc--cCcccC
Confidence 998776668889999999999999874322 111 12 456788
Q ss_pred cEEeecCCCCCccCCccCCCCc-cccccccccccccc
Q 038265 766 QMLTIGDCPNFMALPRSLKDLE-ALENLLITSCPKLS 801 (883)
Q Consensus 766 ~~L~l~~~~~l~~lp~~~~~l~-~L~~L~L~~c~~l~ 801 (883)
++|++++|......|..+..++ +|++|+|++|+...
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 8899998887777777787774 89999998887643
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=7.9e-19 Score=198.02 Aligned_cols=252 Identities=17% Similarity=0.117 Sum_probs=202.7
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccc-cccCCCCCCCeEEee
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMIS 662 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 662 (883)
....++.++.. +..+|..+. ++|++|+|++|...+..|..+.++++|+.|++++|.+..++ ..+.++++|++|+++
T Consensus 55 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRG-LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCC-cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35677777654 778887654 79999999998877777889999999999999999998554 678999999999999
Q ss_pred cCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceE
Q 038265 663 DCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTL 742 (883)
Q Consensus 663 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 742 (883)
+|......+..+..+++|+.|+|++|......+..+..+++|+.|++++|..+...... ......+|+.|
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----------~~~~l~~L~~L 201 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG----------AFEGLFNLKYL 201 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT----------TTTTCTTCCEE
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh----------hccCCCCCCEE
Confidence 98755444455889999999999998765444557899999999999998766533211 12234589999
Q ss_pred EeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCc
Q 038265 743 CVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 743 ~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
++++| .+..+|.. ..+++|+.|+|++|......|..+..+++|+.|+|++|......|..+..+++|+.|+|++|.
T Consensus 202 ~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 202 NLGMC-NIKDMPNL---TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp ECTTS-CCSSCCCC---TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-cccccccc---cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 99997 56777642 578999999999998777778899999999999999999777778889999999999999994
Q ss_pred chhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 823 ALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 823 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
. .......+..+.++..+++++|++...-.
T Consensus 278 l-----~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 278 L-----SSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp C-----SCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred C-----CccChHHhccccCCCEEEccCCCcCCCCC
Confidence 3 23333446678899999999999876543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=9.7e-19 Score=196.57 Aligned_cols=252 Identities=18% Similarity=0.163 Sum_probs=202.6
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccc-cccCCCCCCCeEEee
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMIS 662 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 662 (883)
....++.++. .+..+|..+. ++|+.|+|++|......+..+.++++|+.|++++|.+..++ ..+.++++|++|+++
T Consensus 44 ~~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567777765 4788898664 78999999998777666788999999999999999998554 678999999999999
Q ss_pred cCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceE
Q 038265 663 DCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTL 742 (883)
Q Consensus 663 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 742 (883)
+|......+..+..+++|+.|+|++|......+..+..+++|+.|++++|..+..... .......+|+.|
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------~~~~~l~~L~~L 190 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE----------GAFEGLSNLRYL 190 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT----------TTTTTCSSCCEE
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc----------chhhcccccCee
Confidence 9865443345689999999999999876555556789999999999999776643221 112234589999
Q ss_pred EeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCc
Q 038265 743 CVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 743 ~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
++++| .+..+|. + ..+++|+.|+|++|......|..+..+++|+.|+|++|......+..+.++++|+.|+|++|.
T Consensus 191 ~L~~n-~l~~~~~-~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 191 NLAMC-NLREIPN-L--TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp ECTTS-CCSSCCC-C--TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred cCCCC-cCccccc-c--CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 99997 6777875 2 578999999999998777778899999999999999999777777788999999999999985
Q ss_pred chhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 823 ALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 823 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
. .......+..+.++..+++++|++..--.
T Consensus 267 l-----~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 267 L-----TLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp C-----CCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred C-----CccChhHhccccCCCEEEcCCCCccCCCC
Confidence 3 23334456778999999999999875443
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=7.9e-20 Score=199.16 Aligned_cols=279 Identities=16% Similarity=0.117 Sum_probs=214.4
Q ss_pred ccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCc-cccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 557 SKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
..|+...+.+++++.++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|...+..|..+.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 345666778999999999998765 489999999997 445554 7999999999999998776666778999999999
Q ss_pred EEeCCccccccccc-cCCCCCCCeEEeecCCCcccccc--ccccCcccceeeeccccCCCCC-cccCCCCCCccEEEecc
Q 038265 636 FVVTTKQKSLLESG-IGCLSSLRFLMISDCGNLEYLFE--DIDQLSVLRSLVINSCPRLISL-PPAMKYLSSLETLILLK 711 (883)
Q Consensus 636 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~L~~ 711 (883)
|++++|.+..++.. +..+++|++|++++|.. ..+|. .+..+++|+.|++++|+....+ +..+..+++|+.|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999977765 88999999999999754 45665 6889999999999998655555 56789999999999999
Q ss_pred CCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccC---CCCcc
Q 038265 712 CESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSL---KDLEA 788 (883)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~---~~l~~ 788 (883)
|....... .......+|+.|+++++. +..+|..++ ..+++|+.|++++|......+..+ ...+.
T Consensus 184 n~l~~~~~-----------~~l~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 184 SDLQSYEP-----------KSLKSIQNVSHLILHMKQ-HILLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TTCCEECT-----------TTTTTCSEEEEEEEECSC-STTHHHHHH-HHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred CCcCccCH-----------HHHhccccCCeecCCCCc-cccchhhhh-hhcccccEEECCCCccccccccccccccccch
Confidence 86433211 112334589999999974 677777653 457899999999997554332222 23566
Q ss_pred ccccccccccccc----cCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 789 LENLLITSCPKLS----SLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 789 L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
++.++++++.... .+|..+..+++|+.|++++|..- ......+..++++..+++.+|.+.....
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-----~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-----ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7777777765432 46777788999999999999532 2223335678899999999999887654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=3.2e-20 Score=210.49 Aligned_cols=238 Identities=16% Similarity=0.111 Sum_probs=182.9
Q ss_pred hccCCcccEEEecCccccccc-cccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccC
Q 038265 556 ISKSKSLRVLVLMNSAIEVLP-RKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 634 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 634 (883)
...+++|++|+|++|.+..++ ..+..+++|++|+|++|.+.+..| ++.+++|++|+|++|. +..+| ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC----CCCCcC
Confidence 344568999999999998775 578999999999999987444443 8899999999999874 34444 238999
Q ss_pred EEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCC-CCCCccEEEeccCC
Q 038265 635 MFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMK-YLSSLETLILLKCE 713 (883)
Q Consensus 635 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~L~L~~~~ 713 (883)
+|++++|.+...+. ..+++|+.|++++|......|..++.+++|+.|+|++|...+..|..+. .+++|+.|+|++|.
T Consensus 103 ~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999887654 3578999999999877666677888999999999999887776777665 78999999999886
Q ss_pred CCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccc
Q 038265 714 SLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLL 793 (883)
Q Consensus 714 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 793 (883)
.-.... .....+|+.|++++| .+..+|..+ ..+++|+.|+|++|. +..+|..+..+++|+.|+
T Consensus 181 l~~~~~-------------~~~l~~L~~L~Ls~N-~l~~~~~~~--~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 181 IYDVKG-------------QVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp CCEEEC-------------CCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEE
T ss_pred cccccc-------------cccCCCCCEEECCCC-CCCCCCHhH--cCCCCccEEEecCCc-CcccchhhccCCCCCEEE
Confidence 433211 112457888888886 466666665 567888889988875 446788888888888888
Q ss_pred ccccccc-ccCCCCCCCCCCcCeeecc
Q 038265 794 ITSCPKL-SSLPEGMHHLTTLKTLAIE 819 (883)
Q Consensus 794 L~~c~~l-~~lp~~l~~l~~L~~L~l~ 819 (883)
+++|+.. ..+|..+..+++|+.+++.
T Consensus 244 l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8888866 4566666777888888776
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=3e-19 Score=188.28 Aligned_cols=249 Identities=20% Similarity=0.199 Sum_probs=144.4
Q ss_pred CCcccEEEecCcccccccc-ccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccC-CccccCCcccCEE
Q 038265 559 SKSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEEL-PKDIRYLVSLRMF 636 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L 636 (883)
.++|+.|++++|.+..+|. .+..+++|++|++++|.+.+..|..+.++++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3567777777777776653 4677777777777777644444666777777777777776534444 5667777777777
Q ss_pred EeCCcccccc-ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCC
Q 038265 637 VVTTKQKSLL-ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESL 715 (883)
Q Consensus 637 ~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l 715 (883)
++++|.+... +..+..+++|++|++++|......+..++.+++|+.|++++|......+..+..+++|+.|++++|...
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 7777777644 445677777777777776544333344677777888877776544333345677777777777776432
Q ss_pred ccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccc
Q 038265 716 DLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLIT 795 (883)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~ 795 (883)
.... .......+|+.|++++| .+..++...+ ..+++|++|++++|+.....+. ......|+.+...
T Consensus 191 ~~~~-----------~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~ 256 (285)
T 1ozn_A 191 HVHP-----------HAFRDLGRLMTLYLFAN-NLSALPTEAL-APLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGS 256 (285)
T ss_dssp EECT-----------TTTTTCTTCCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSE
T ss_pred ccCH-----------hHccCcccccEeeCCCC-cCCcCCHHHc-ccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccc
Confidence 2111 00112234555555554 3333433221 4566677777766654322111 0111234444444
Q ss_pred cccccccCCCCCCC--CCCcCeeeccCC
Q 038265 796 SCPKLSSLPEGMHH--LTTLKTLAIEEC 821 (883)
Q Consensus 796 ~c~~l~~lp~~l~~--l~~L~~L~l~~c 821 (883)
.+......|+.+.+ +..+...++.+|
T Consensus 257 ~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 257 SSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp ECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cCccccCCchHhCCcChhhcCHHHhccC
Confidence 44444444543322 344555555555
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=2e-21 Score=220.47 Aligned_cols=207 Identities=18% Similarity=0.137 Sum_probs=107.7
Q ss_pred CcceEEEEEEecccccccccccCCCCCceeEEeeccCCccc-hhhhhHHhhccCCcccEEEecCcccccc-ccc-cCCCC
Q 038265 507 PKSVRHLSFVSANALRNDFASFLPDLGRVRTIMLPIDDERT-SQSFVTSCISKSKSLRVLVLMNSAIEVL-PRK-MGNLR 583 (883)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~-~~~l~ 583 (883)
|+.++.+.+..+..........+..+++|+.|.+..+.... ....++..+..+++|++|++++|.+... +.. ...+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45566666655544333333335556667777776433221 1123445566667777777777766431 111 12232
Q ss_pred ----CceEecccCCcccc----ccCccccCCCcccEeecCCCCCCccCCccc-----cCCcccCEEEeCCccccc-----
Q 038265 584 ----QLRHLDLSGNRKIK----KLPNSICELQSLQTLNLGDCLELEELPKDI-----RYLVSLRMFVVTTKQKSL----- 645 (883)
Q Consensus 584 ----~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~-----~~l~~L~~L~l~~~~~~~----- 645 (883)
+|++|++++|.+.. .+|..+.++++|++|++++|......+..+ ...++|++|++++|.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 57777777665432 456666667777777777665433222222 124456666666666552
Q ss_pred cccccCCCCCCCeEEeecCCCccccccccc-----cCcccceeeeccccCCCC----CcccCCCCCCccEEEeccCC
Q 038265 646 LESGIGCLSSLRFLMISDCGNLEYLFEDID-----QLSVLRSLVINSCPRLIS----LPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 646 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----l~~~l~~l~~L~~L~L~~~~ 713 (883)
++..+..+++|++|++++|......+..+. ..++|+.|++++|..... ++..+..+++|++|++++|.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 233445556666666666553222122121 234666666666544331 34445555666666666553
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=3.5e-18 Score=197.47 Aligned_cols=262 Identities=23% Similarity=0.264 Sum_probs=169.2
Q ss_pred ceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEee
Q 038265 534 RVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLN 613 (883)
Q Consensus 534 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 613 (883)
+++.|.+..+... .+ +..+. ++|++|++++|.++.+|. .+++|++|+|++|. +..+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~---~l-p~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT---TL-PDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS---CC-CSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEE
T ss_pred CCcEEEecCCCcC---cc-ChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEE
Confidence 4677777633322 11 22222 678888888888888876 46788888888876 566776 567888888
Q ss_pred cCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCC
Q 038265 614 LGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLIS 693 (883)
Q Consensus 614 L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 693 (883)
+++|. +..+|. .+++|+.|++++|.+..+|.. +++|++|++++|. +..+|. .+++|+.|++++|.. ..
T Consensus 108 Ls~N~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l-~~ 175 (622)
T 3g06_A 108 IFSNP-LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQL-TS 175 (622)
T ss_dssp ECSCC-CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-SC
T ss_pred CcCCc-CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCC-CC
Confidence 88754 445665 567888888888888777643 4788888888864 344443 346777788877653 44
Q ss_pred CcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCC
Q 038265 694 LPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDC 773 (883)
Q Consensus 694 l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~ 773 (883)
+| ..+++|+.|++++|..-.+. ....+|+.|++++| .+..+|. .+++|+.|++++|
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~---------------~~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N 231 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLP---------------TLPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGN 231 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCC---------------CCCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSS
T ss_pred Cc---ccCCCCcEEECCCCCCCCCC---------------CccchhhEEECcCC-cccccCC-----CCCCCCEEEccCC
Confidence 55 34678888888887543221 11246777777775 4555553 2367777777777
Q ss_pred CCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCccc
Q 038265 774 PNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIK 853 (883)
Q Consensus 774 ~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~ 853 (883)
. ++.+| ..+++|+.|+|++|. +..+|. .+++|+.|++++|.. +. . ...+..++++..+++.+|.+.
T Consensus 232 ~-L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L-~~----l-p~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 232 R-LTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQL-TR----L-PESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp C-CSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-CS----C-CGGGGGSCTTCEEECCSCCCC
T ss_pred c-cCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCCC-Cc----C-CHHHhhccccCEEEecCCCCC
Confidence 4 44566 345777777777775 446665 457777777777742 11 1 223455677777777777777
Q ss_pred chhhh
Q 038265 854 SSDIQ 858 (883)
Q Consensus 854 ~~~~~ 858 (883)
.....
T Consensus 298 ~~~~~ 302 (622)
T 3g06_A 298 ERTLQ 302 (622)
T ss_dssp HHHHH
T ss_pred CcCHH
Confidence 55543
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=7.3e-18 Score=194.85 Aligned_cols=237 Identities=24% Similarity=0.237 Sum_probs=183.5
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEe
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTL 612 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 612 (883)
++|+.|.+..+... .+ +. .+++|++|+|++|.++.+|. .+++|++|++++|. +..+|. .+++|++|
T Consensus 61 ~~L~~L~L~~N~l~---~l-p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLT---SL-PA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCS---CC-CC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCC---CC-CC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEE
Confidence 67888888744332 11 11 46899999999999999987 67899999999886 666776 57889999
Q ss_pred ecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCC
Q 038265 613 NLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLI 692 (883)
Q Consensus 613 ~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (883)
++++|. +..+|.. +++|++|++++|.+..+|. .+++|+.|++++|.. ..+| ..+++|+.|++++|.. .
T Consensus 127 ~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l-~~l~---~~~~~L~~L~Ls~N~l-~ 194 (622)
T 3g06_A 127 WIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQL-TSLP---MLPSGLQELSVSDNQL-A 194 (622)
T ss_dssp ECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSSCC-S
T ss_pred ECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCC-CCCc---ccCCCCcEEECCCCCC-C
Confidence 999865 5557764 4899999999999887764 457899999998654 4566 5678999999998764 4
Q ss_pred CCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecC
Q 038265 693 SLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGD 772 (883)
Q Consensus 693 ~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~ 772 (883)
.+|.. +++|+.|++++|..-.+. ....+|+.|++++| .++.+| ..+++|+.|++++
T Consensus 195 ~l~~~---~~~L~~L~L~~N~l~~l~---------------~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 195 SLPTL---PSELYKLWAYNNRLTSLP---------------ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSG 250 (622)
T ss_dssp CCCCC---CTTCCEEECCSSCCSSCC---------------CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCS
T ss_pred CCCCc---cchhhEEECcCCcccccC---------------CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCC
Confidence 56653 478999999987543321 12357999999987 667777 3458999999999
Q ss_pred CCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcch
Q 038265 773 CPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPAL 824 (883)
Q Consensus 773 ~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 824 (883)
|. +..+|. .+++|+.|+|++|. +..+|..+.++++|+.|++++|+..
T Consensus 251 N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 251 NR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCC
Confidence 85 567776 67899999999987 4588988999999999999999753
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=1.9e-19 Score=192.67 Aligned_cols=269 Identities=15% Similarity=0.118 Sum_probs=203.1
Q ss_pred ccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCC
Q 038265 527 SFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICEL 606 (883)
Q Consensus 527 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 606 (883)
..+..+++|+.|.+..+. .....+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..+| .+
T Consensus 28 ~~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~ 98 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VG 98 (317)
T ss_dssp HHHTTGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----EC
T ss_pred HHhccCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CC
Confidence 344567789999997433 333455678899999999999999987765 8999999999999987 55555 34
Q ss_pred CcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccc-cccCCCCCCCeEEeecCCCcccccccc-ccCcccceee
Q 038265 607 QSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISDCGNLEYLFEDI-DQLSVLRSLV 684 (883)
Q Consensus 607 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ 684 (883)
++|++|++++|...+..+. .+++|++|++++|.+..++ ..+..+++|+.|++++|......+..+ ..+++|+.|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 8999999999766554333 3688999999999998654 478889999999999987665555555 4789999999
Q ss_pred eccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCC
Q 038265 685 INSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKT 764 (883)
Q Consensus 685 l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 764 (883)
+++|... .++. ...+++|+.|++++|..-..... .....+|+.|++++| .+..+|..+ ..+++
T Consensus 176 L~~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~~l~~~------------~~~l~~L~~L~L~~N-~l~~l~~~~--~~l~~ 238 (317)
T 3o53_A 176 LQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAFMGPE------------FQSAAGVTWISLRNN-KLVLIEKAL--RFSQN 238 (317)
T ss_dssp CTTSCCC-EEEC-CCCCTTCCEEECCSSCCCEECGG------------GGGGTTCSEEECTTS-CCCEECTTC--CCCTT
T ss_pred CCCCcCc-cccc-ccccccCCEEECCCCcCCcchhh------------hcccCcccEEECcCC-cccchhhHh--hcCCC
Confidence 9998754 4444 34589999999999865432211 223458999999997 677888876 78899
Q ss_pred ccEEeecCCCCC-ccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCcch
Q 038265 765 LQMLTIGDCPNF-MALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECPAL 824 (883)
Q Consensus 765 L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 824 (883)
|+.|++++|+.. ..+|..+..+++|+.|++.+|+.+...+..-...+.+....-..|+.+
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCC
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccC
Confidence 999999999876 577888889999999999988876654433333344444434445443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=8e-19 Score=198.99 Aligned_cols=219 Identities=13% Similarity=0.083 Sum_probs=176.4
Q ss_pred CCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEE
Q 038265 581 NLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLM 660 (883)
Q Consensus 581 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 660 (883)
.+++|++|+|++|.+....|..++.+++|++|+|++|...+..| +..+++|++|++++|.+..++. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 44589999999998666667789999999999999987665554 8999999999999999887653 38999999
Q ss_pred eecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcc
Q 038265 661 ISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLR 740 (883)
Q Consensus 661 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 740 (883)
+++|......+ ..+++|+.|++++|...+..|..+..+++|+.|+|++|.......... .....+|+
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----------~~~l~~L~ 172 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------AASSDTLE 172 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG----------GGGTTTCC
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH----------hhhCCccc
Confidence 99986554333 357899999999998877778888999999999999986543221100 11245899
Q ss_pred eEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccC
Q 038265 741 TLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEE 820 (883)
Q Consensus 741 ~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 820 (883)
.|++++| .+..+|... .+++|++|+|++|. +..+|..+..+++|+.|+|++|.. ..+|..+..+++|+.|++++
T Consensus 173 ~L~Ls~N-~l~~~~~~~---~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 173 HLNLQYN-FIYDVKGQV---VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp EEECTTS-CCCEEECCC---CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTT
T ss_pred EEecCCC-ccccccccc---cCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCC
Confidence 9999997 466665443 58999999999996 455666788999999999999885 46888899999999999999
Q ss_pred Ccch
Q 038265 821 CPAL 824 (883)
Q Consensus 821 c~~l 824 (883)
|+..
T Consensus 247 N~l~ 250 (487)
T 3oja_A 247 NGFH 250 (487)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 9865
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=3.7e-19 Score=190.04 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=163.3
Q ss_pred ccEEEecCccccc--cccccC-------CCCCceEecccCCccccccCccc--cCCCcccEeecCCCCCCccCCccccCC
Q 038265 562 LRVLVLMNSAIEV--LPRKMG-------NLRQLRHLDLSGNRKIKKLPNSI--CELQSLQTLNLGDCLELEELPKDIRYL 630 (883)
Q Consensus 562 L~~L~l~~~~~~~--lp~~~~-------~l~~L~~L~l~~~~~~~~lp~~~--~~l~~L~~L~L~~~~~~~~lp~~~~~l 630 (883)
|+.|++++|.+.. +|..+. ++++|++|++++|.+.+.+|..+ +.+++|++|++++|...+. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 8888999888853 565554 68899999999998777888876 8899999999999766555 8777777
Q ss_pred -----cccCEEEeCCccccccc-cccCCCCCCCeEEeecCCCccc--ccccc--ccCcccceeeeccccCCC--CCc-cc
Q 038265 631 -----VSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISDCGNLEY--LFEDI--DQLSVLRSLVINSCPRLI--SLP-PA 697 (883)
Q Consensus 631 -----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~l~-~~ 697 (883)
++|++|++++|.+...+ ..++.+++|++|++++|...+. ++..+ +.+++|+.|++++|.... .++ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 89999999999998665 6889999999999999876544 34444 889999999999987542 233 23
Q ss_pred CCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCc
Q 038265 698 MKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFM 777 (883)
Q Consensus 698 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~ 777 (883)
+..+++|+.|++++|....... .+ .+ ..+++|++|++++|.. +
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~---------------------------------~~-~~--~~l~~L~~L~Ls~N~l-~ 266 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAG---------------------------------AP-SC--DWPSQLNSLNLSFTGL-K 266 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCC---------------------------------CS-CC--CCCTTCCEEECTTSCC-S
T ss_pred HhcCCCCCEEECCCCcCCcccc---------------------------------hh-hh--hhcCCCCEEECCCCcc-C
Confidence 4577899999998874322110 00 01 2356788888888754 4
Q ss_pred cCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCc
Q 038265 778 ALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 778 ~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
.+|..+. ++|++|+|++|.. ..+|. +..+++|+.|++++|+
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l-~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCC-CSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhhcc--CCceEEECCCCCC-CCChh-HhhCCCCCEEeccCCC
Confidence 7777665 7888888888764 44465 7778888888888875
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1e-17 Score=176.25 Aligned_cols=153 Identities=20% Similarity=0.116 Sum_probs=109.3
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
+.++++++.++++++.+..+|..+. ++|++|++++|.+....|..+.++++|++|+|++|.. ..+|.. ..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCE
Confidence 4567788888888888888887764 5788888888875555567788888888888887654 444433 67788888
Q ss_pred EEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccC
Q 038265 636 FVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 636 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~ 712 (883)
|++++|.+..+|..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888887777777777777888887776544333355677777777777776554433444566677777777665
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.4e-17 Score=186.77 Aligned_cols=281 Identities=18% Similarity=0.181 Sum_probs=136.3
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEe
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTL 612 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 612 (883)
++|+.|.+..+... . ++ .+..+++|++|++++|.+..+|..+ .+|++|++++|. +..+| .++++++|++|
T Consensus 131 ~~L~~L~L~~n~l~---~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE---K-LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCS---S-CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCC---C-Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEE
Confidence 45666666532221 1 12 2556666666666666666555432 356666666654 33455 35666666666
Q ss_pred ecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCC
Q 038265 613 NLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLI 692 (883)
Q Consensus 613 ~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (883)
++++|... .+|... .+|++|++++|.+..+| .++.+++|+.|++++|.. ..+|. .+++|+.|++++|...
T Consensus 201 ~l~~N~l~-~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l-~~l~~---~~~~L~~L~l~~N~l~- 270 (454)
T 1jl5_A 201 YADNNSLK-KLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL-KTLPD---LPPSLEALNVRDNYLT- 270 (454)
T ss_dssp ECCSSCCS-SCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCS---CCTTCCEEECCSSCCS-
T ss_pred ECCCCcCC-cCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC-Ccccc---cccccCEEECCCCccc-
Confidence 66665433 244322 35666666666665554 355666666666665432 22332 1255556666554432
Q ss_pred CCcccCCCCCCccEEEeccCCCCccCCcccccc----ccC-CCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccE
Q 038265 693 SLPPAMKYLSSLETLILLKCESLDLNLNMEMEE----EGS-HHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQM 767 (883)
Q Consensus 693 ~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~----~~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~ 767 (883)
.+|.. +++|+.|++++|..-.......... ... .........+|+.|++++| .+..+|.. +++|++
T Consensus 271 ~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~-----~~~L~~ 341 (454)
T 1jl5_A 271 DLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL-----PPRLER 341 (454)
T ss_dssp CCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC-----CTTCCE
T ss_pred ccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc-----CCcCCE
Confidence 23432 2455555555543222110000000 000 0000111248999999997 46667643 489999
Q ss_pred EeecCCCCCccCCccCCCCccccccccccccccc--cCCCCCCCC-------------CCcCeeeccCCcchhhhhCCCC
Q 038265 768 LTIGDCPNFMALPRSLKDLEALENLLITSCPKLS--SLPEGMHHL-------------TTLKTLAIEECPALCERCKPLT 832 (883)
Q Consensus 768 L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~c~~l~~~~~~~~ 832 (883)
|++++|. +..+|. .+++|++|++++|+..+ .+|..+..+ ++|+.|++++|+...-
T Consensus 342 L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~------ 411 (454)
T 1jl5_A 342 LIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF------ 411 (454)
T ss_dssp EECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred EECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc------
Confidence 9999985 557877 47999999999999877 788888777 8999999999874320
Q ss_pred CCCCCccCCCCeeeeCCCcccch
Q 038265 833 GEDWPKIAHIPQIDLDGEMIKSS 855 (883)
Q Consensus 833 ~~~~~~~~~l~~l~l~~n~i~~~ 855 (883)
+. . -..+..+.+.+|.+...
T Consensus 412 ~~-i--P~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 412 PD-I--PESVEDLRMNSERVVDP 431 (454)
T ss_dssp -----------------------
T ss_pred cc-c--hhhHhheeCcCcccCCc
Confidence 01 1 13456667777665543
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=7.2e-18 Score=176.75 Aligned_cols=147 Identities=22% Similarity=0.182 Sum_probs=89.2
Q ss_pred EEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccc
Q 038265 565 LVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS 644 (883)
Q Consensus 565 L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 644 (883)
++..+..+..+|..+. ++|++|++++|.+....+..+.++++|++|++++|...+..+..+..+++|++|++++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 3444555556665543 35667777666533333335666667777777666444444445666677777777766666
Q ss_pred ccc-cccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCC-CCcccCCCCCCccEEEeccCC
Q 038265 645 LLE-SGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLI-SLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 645 ~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~L~L~~~~ 713 (883)
..+ ..+..+++|++|++++|......+..++.+++|+.|++++|.... .+|..+..+++|++|++++|.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 433 456667777777776665443333356677777777777765543 356667777777777777664
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.8e-17 Score=174.48 Aligned_cols=203 Identities=21% Similarity=0.215 Sum_probs=157.5
Q ss_pred ccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCC
Q 038265 578 KMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLR 657 (883)
Q Consensus 578 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 657 (883)
.++++++|+.++++++. +..+|..+. ++|+.|++++|...+..|..+..+++|++|++++|.+..++.. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 35678899999999876 678887664 7899999999887776678899999999999999999877654 7899999
Q ss_pred eEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCC
Q 038265 658 FLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRS 737 (883)
Q Consensus 658 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 737 (883)
+|++++|. +..+|..+..+++|+.|++++|......+..+..+++|+.|++++|..-
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---------------------- 137 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK---------------------- 137 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC----------------------
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC----------------------
Confidence 99999865 4578888889999999999998765555567888999999999886422
Q ss_pred CcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCc-cCCCCccccccccccccccccCCCCCCCCCCcCee
Q 038265 738 HLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPR-SLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTL 816 (883)
Q Consensus 738 ~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L 816 (883)
.+|...+ ..+++|+.|++++|.. +.+|. .+..+++|+.|+|++|. +..+|..+..+++|+.|
T Consensus 138 --------------~~~~~~~-~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 138 --------------TLPPGLL-TPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp --------------CCCTTTT-TTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEE
T ss_pred --------------ccChhhc-ccccCCCEEECCCCcC-CccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeE
Confidence 2222221 4567788888888754 44544 45678888888888876 55777777777888888
Q ss_pred eccCCcch
Q 038265 817 AIEECPAL 824 (883)
Q Consensus 817 ~l~~c~~l 824 (883)
++++||..
T Consensus 201 ~L~~Np~~ 208 (290)
T 1p9a_G 201 FLHGNPWL 208 (290)
T ss_dssp ECCSCCBC
T ss_pred EeCCCCcc
Confidence 88887753
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=6.3e-18 Score=177.18 Aligned_cols=203 Identities=19% Similarity=0.083 Sum_probs=147.3
Q ss_pred CcccEEEecCcccccccc-ccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEe
Q 038265 560 KSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 638 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 638 (883)
++|++|++++|.+..++. .+.++++|++|++++|......+..+.++++|++|++++|...+..|..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 479999999999988776 7888999999999998755444557888999999999998776666678899999999999
Q ss_pred CCcccccccc-ccCCCCCCCeEEeecCCCcc-ccccccccCcccceeeeccccCCCCCcccCCCCCCcc----EEEeccC
Q 038265 639 TTKQKSLLES-GIGCLSSLRFLMISDCGNLE-YLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLE----TLILLKC 712 (883)
Q Consensus 639 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~----~L~L~~~ 712 (883)
++|.+..++. .+..+++|++|++++|.... .+|..++.+++|+.|++++|......+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9998886554 68899999999999976544 3678899999999999999876554455555555555 5666554
Q ss_pred CCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccc
Q 038265 713 ESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENL 792 (883)
Q Consensus 713 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 792 (883)
. +..++... ....+|+.|++++|......+..+..+++|+.|
T Consensus 188 ~------------------------------------l~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 188 P------------------------------------MNFIQPGA--FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp C------------------------------------CCEECTTS--SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred c------------------------------------ccccCccc--cCCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 3 22222222 122367777777765332223334667777777
Q ss_pred cccccccc
Q 038265 793 LITSCPKL 800 (883)
Q Consensus 793 ~L~~c~~l 800 (883)
+|++|+..
T Consensus 230 ~l~~N~~~ 237 (276)
T 2z62_A 230 WLHTNPWD 237 (276)
T ss_dssp ECCSSCBC
T ss_pred EccCCccc
Confidence 77776643
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.1e-17 Score=174.81 Aligned_cols=211 Identities=18% Similarity=0.145 Sum_probs=155.2
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
...+++|+.|+++++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|...+..|..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345788888899888888765 47788889999998886 44454 5788888999999887665555555788888888
Q ss_pred EEeCCcccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCC
Q 038265 636 FVVTTKQKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCES 714 (883)
Q Consensus 636 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~ 714 (883)
|++++|.+..++. .+..+++|++|++++|......+..++.+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 8888888875554 367888888888888754433334467888888888888776554455567788888888877632
Q ss_pred CccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccccc
Q 038265 715 LDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLI 794 (883)
Q Consensus 715 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 794 (883)
..++...+ ..+++|++|++++|+.. +.+++|+.|++
T Consensus 194 ------------------------------------~~~~~~~~-~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~ 229 (272)
T 3rfs_A 194 ------------------------------------KSVPDGVF-DRLTSLQYIWLHDNPWD-------CTCPGIRYLSE 229 (272)
T ss_dssp ------------------------------------SCCCTTTT-TTCTTCCEEECCSSCBC-------CCTTTTHHHHH
T ss_pred ------------------------------------CccCHHHH-hCCcCCCEEEccCCCcc-------ccCcHHHHHHH
Confidence 22222211 56788999999998643 34678999999
Q ss_pred ccccccccCCCCCCCCCCc
Q 038265 795 TSCPKLSSLPEGMHHLTTL 813 (883)
Q Consensus 795 ~~c~~l~~lp~~l~~l~~L 813 (883)
+.|...+.+|..++.++..
T Consensus 230 ~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 230 WINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHHHTGGGBBCTTSCBCGG
T ss_pred HHHhCCCcccCcccccCCC
Confidence 9999888999877766543
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2.6e-20 Score=211.33 Aligned_cols=336 Identities=18% Similarity=0.186 Sum_probs=174.7
Q ss_pred ceEEEEEEecccccc---cccccCCCCCceeEEeeccCCccchhhhhHHhhccCC----cccEEEecCcccc-----ccc
Q 038265 509 SVRHLSFVSANALRN---DFASFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSK----SLRVLVLMNSAIE-----VLP 576 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~-----~lp 576 (883)
.++.+.+..+..... .++..+..+++|++|.+..+.. ....+...+..++ +|++|++++|.+. .+|
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL--GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC--HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC--ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 455666655543321 2334455667788887763222 1222222233344 6888888888776 456
Q ss_pred cccCCCCCceEecccCCccccccCcccc-----CCCcccEeecCCCCCCcc----CCccccCCcccCEEEeCCccccccc
Q 038265 577 RKMGNLRQLRHLDLSGNRKIKKLPNSIC-----ELQSLQTLNLGDCLELEE----LPKDIRYLVSLRMFVVTTKQKSLLE 647 (883)
Q Consensus 577 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~~~~ 647 (883)
..+..+++|++|++++|......+..+. ..++|++|++++|..... ++..+..+++|++|++++|.+....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 6777788888888887764333232222 245688888887755542 3555666777888888877765211
Q ss_pred -cccC-----CCCCCCeEEeecCCCccc----cccccccCcccceeeeccccCCCC----C-cccCCCCCCccEEEeccC
Q 038265 648 -SGIG-----CLSSLRFLMISDCGNLEY----LFEDIDQLSVLRSLVINSCPRLIS----L-PPAMKYLSSLETLILLKC 712 (883)
Q Consensus 648 -~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----l-~~~l~~l~~L~~L~L~~~ 712 (883)
..+. .+++|++|++++|..... ++..+..+++|++|++++|..... + +..+..+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 1111 245777777777654332 455566677777777777653221 1 222335677777777776
Q ss_pred CCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCcc-----chhhhhcCCCCCccEEeecCCCCCcc----CCccC
Q 038265 713 ESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLE-----LPQWLLQGSSKTLQMLTIGDCPNFMA----LPRSL 783 (883)
Q Consensus 713 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~L~~L~l~~~~~l~~----lp~~~ 783 (883)
..-....... ........+|+.|++++|. +.. ++..+ ....++|++|++++|..... ++..+
T Consensus 267 ~l~~~~~~~l-------~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 337 (461)
T 1z7x_W 267 GITAKGCGDL-------CRVLRAKESLKELSLAGNE-LGDEGARLLCETL-LEPGCQLESLWVKSCSFTAACCSHFSSVL 337 (461)
T ss_dssp CCCHHHHHHH-------HHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHH-TSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred CCCHHHHHHH-------HHHHhhCCCcceEECCCCC-CchHHHHHHHHHh-ccCCccceeeEcCCCCCchHHHHHHHHHH
Confidence 4322100000 0001113356666666653 221 11111 12335666677666654332 34444
Q ss_pred CCCccccccccccccccccCC----CCCC-CCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchh
Q 038265 784 KDLEALENLLITSCPKLSSLP----EGMH-HLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSD 856 (883)
Q Consensus 784 ~~l~~L~~L~L~~c~~l~~lp----~~l~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 856 (883)
..+++|++|+|++|......+ ..+. ..++|+.|++++|..-...+.. ....+...+++..+++.+|.+...+
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS-LAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH-HHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH-HHHHHHhCCCccEEECCCCCCCHHH
Confidence 555666666666665322211 1111 1456666666666422100000 0001123455666666666666554
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=4.8e-17 Score=169.66 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=99.7
Q ss_pred CcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCc-cccCCcccCEEEe
Q 038265 560 KSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPK-DIRYLVSLRMFVV 638 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l 638 (883)
..++.++++++.+..+|..+. .+|++|++++|.+....+..+.++++|++|++++|... .+|. .+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 357788888888888887664 57888888888744333446788888888888886544 4444 3467788888888
Q ss_pred CCcccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccC
Q 038265 639 TTKQKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 639 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~ 712 (883)
++|.+..++. .+..+++|++|++++|......+..++.+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 8877775543 4566777777777776544433444566677777777666543333333556666666666554
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=5.6e-17 Score=169.21 Aligned_cols=200 Identities=20% Similarity=0.202 Sum_probs=148.8
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccc-cCCCCCCCeEEee
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMIS 662 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~ 662 (883)
++++++++++. +..+|..+. ++|++|++++|......+..+..+++|++|++++|.+..++.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57889999876 667887554 6899999999766555455789999999999999998876654 5789999999999
Q ss_pred cCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceE
Q 038265 663 DCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTL 742 (883)
Q Consensus 663 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 742 (883)
+|......+..+..+++|+.|++++|......+..+..+++|++|++++|..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------------------------- 145 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL---------------------------- 145 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC----------------------------
Confidence 8765444445678899999999998876666566778889999999887632
Q ss_pred EeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCc
Q 038265 743 CVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 743 ~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
..+|...+ ..+++|++|++++|......+..+..+++|++|+|++|......+..+..+++|+.|++++||
T Consensus 146 --------~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 146 --------QSLPKGVF-DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------CCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------CccCHhHc-cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 22222211 456788888888886544444457788888888888886443333446778888888888887
Q ss_pred c
Q 038265 823 A 823 (883)
Q Consensus 823 ~ 823 (883)
.
T Consensus 217 ~ 217 (270)
T 2o6q_A 217 W 217 (270)
T ss_dssp B
T ss_pred e
Confidence 4
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=4e-19 Score=192.36 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=84.7
Q ss_pred CcccEEEecCccccccccccCCCCCceEecccCCccccc-cCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEe
Q 038265 560 KSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKK-LPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 638 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 638 (883)
++++.|+++++.+...+..+..+++|++|++++|..... +|..+..+++|++|++++|...+..|..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 566666776666665555555666666666666653333 5555666666666666666555555555666666666666
Q ss_pred CCc-ccc--ccccccCCCCCCCeEEeecCCCccc--cccccccCc-ccceeeecccc-CC--CCCcccCCCCCCccEEEe
Q 038265 639 TTK-QKS--LLESGIGCLSSLRFLMISDCGNLEY--LFEDIDQLS-VLRSLVINSCP-RL--ISLPPAMKYLSSLETLIL 709 (883)
Q Consensus 639 ~~~-~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~-~L~~L~l~~~~-~~--~~l~~~l~~l~~L~~L~L 709 (883)
++| .+. .++..+..+++|++|++++|..++. ++..+..++ +|++|++++|. .+ ..+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 665 343 2333445556666666665522222 334445555 55555555553 11 233444444555555555
Q ss_pred ccC
Q 038265 710 LKC 712 (883)
Q Consensus 710 ~~~ 712 (883)
++|
T Consensus 230 ~~~ 232 (336)
T 2ast_B 230 SDS 232 (336)
T ss_dssp TTC
T ss_pred CCC
Confidence 544
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.4e-17 Score=167.52 Aligned_cols=205 Identities=16% Similarity=0.283 Sum_probs=130.5
Q ss_pred ccccccccCCCCCceEecccCCccccccC-ccccCCCcccEeecCCCCCCccCCc-cccCCcccCEEEeCC-ccccccc-
Q 038265 572 IEVLPRKMGNLRQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCLELEELPK-DIRYLVSLRMFVVTT-KQKSLLE- 647 (883)
Q Consensus 572 ~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~-~~~~~~~- 647 (883)
+..+|. +. .+|++|++++|. +..+| ..+..+++|++|++++|..+..+|. .+..+++|++|++++ |.+..++
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 566665 33 367777777776 33443 3566777777777777653444443 566777777777776 6666544
Q ss_pred cccCCCCCCCeEEeecCCCccccccccccCcccc---eeeeccccCCCCCc-ccCCCCCCcc-EEEeccCCCCccCCccc
Q 038265 648 SGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLR---SLVINSCPRLISLP-PAMKYLSSLE-TLILLKCESLDLNLNME 722 (883)
Q Consensus 648 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~l~-~~l~~l~~L~-~L~L~~~~~l~~~~~~~ 722 (883)
..+..+++|++|++++|.. +.+|. ++.+++|+ .|++++|..+..+| ..+..+++|+ .|++++|.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--------- 167 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--------- 167 (239)
T ss_dssp TSEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC---------
T ss_pred HHhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC---------
Confidence 3566777777777777653 33554 66666666 77777773444444 3466777777 77776642
Q ss_pred cccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccC-CccCCCC-cccccccccccccc
Q 038265 723 MEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMAL-PRSLKDL-EALENLLITSCPKL 800 (883)
Q Consensus 723 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~~~l-~~L~~L~L~~c~~l 800 (883)
+..+|...+ ..++|+.|++++|+.++.+ +..+..+ ++|+.|++++|+ +
T Consensus 168 ---------------------------l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l 217 (239)
T 2xwt_C 168 ---------------------------FTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-V 217 (239)
T ss_dssp ---------------------------CCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-C
T ss_pred ---------------------------CcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-c
Confidence 223333332 2267888888888545555 4456777 888888888876 4
Q ss_pred ccCCCCCCCCCCcCeeeccCCcc
Q 038265 801 SSLPEGMHHLTTLKTLAIEECPA 823 (883)
Q Consensus 801 ~~lp~~l~~l~~L~~L~l~~c~~ 823 (883)
..+|.. .+++|+.|++.+|+.
T Consensus 218 ~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 218 TALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCCT--TCTTCSEEECTTC--
T ss_pred ccCChh--HhccCceeeccCccC
Confidence 466653 678888888888754
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=4e-17 Score=170.40 Aligned_cols=177 Identities=19% Similarity=0.123 Sum_probs=143.5
Q ss_pred CCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCccc
Q 038265 531 DLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQ 610 (883)
Q Consensus 531 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 610 (883)
.+.+++.|.+..+..... ..+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..+.++++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~-----~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV-----QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCcccc-----cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 456778888764333221 13678999999999999998875 788999999999999975555555578999999
Q ss_pred EeecCCCCCCccCCccccCCcccCEEEeCCcccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeecccc
Q 038265 611 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCP 689 (883)
Q Consensus 611 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 689 (883)
+|++++|...+..|..+..+++|++|++++|.+..++. .+..+++|+.|++++|......+..++.+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 99999987666556668999999999999999986654 46899999999999987654444557899999999999998
Q ss_pred CCCCCcccCCCCCCccEEEeccCC
Q 038265 690 RLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 690 ~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
..+..+..+..+++|+.|++++|+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCC
Confidence 776666678899999999998874
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=4.5e-18 Score=184.07 Aligned_cols=177 Identities=20% Similarity=0.176 Sum_probs=118.2
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccc--cccccCCCCCceEecccCCccccccCccccCCCccc
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEV--LPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQ 610 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 610 (883)
.+++.+.+..+... ...+. +..+++|++|++++|.+.. +|..+..+++|++|++++|......|..++.+++|+
T Consensus 70 ~~l~~L~l~~n~l~---~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMD---QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEEC---SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCcccc---ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 56666666532211 11111 3457778888888877753 666677778888888887765556677777788888
Q ss_pred EeecCCCCCCc--cCCccccCCcccCEEEeCCc-cccc--cccccCCCC-CCCeEEeecCC-Cc--cccccccccCcccc
Q 038265 611 TLNLGDCLELE--ELPKDIRYLVSLRMFVVTTK-QKSL--LESGIGCLS-SLRFLMISDCG-NL--EYLFEDIDQLSVLR 681 (883)
Q Consensus 611 ~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~l~-~L~~L~l~~~~-~~--~~~~~~l~~l~~L~ 681 (883)
+|++++|..+. .+|..+..+++|++|++++| .+.. ++..+..++ +|++|++++|. .+ ..++..+..+++|+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 88888774443 35666777788888888877 6653 455566777 88888887774 22 34555666778888
Q ss_pred eeeeccccC-CCCCcccCCCCCCccEEEeccCC
Q 038265 682 SLVINSCPR-LISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 682 ~L~l~~~~~-~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
.|++++|.. ....+..+..+++|++|++++|.
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 888887773 33555566777777777777764
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=7.9e-19 Score=205.89 Aligned_cols=287 Identities=13% Similarity=0.025 Sum_probs=146.7
Q ss_pred HHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccc---cccCccccCCCcccEeecCCCCCCccCCccccC
Q 038265 553 TSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKI---KKLPNSICELQSLQTLNLGDCLELEELPKDIRY 629 (883)
Q Consensus 553 ~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~ 629 (883)
+..+.++++|+.|++++|.+..+|..+..+++|++|+++++... ...+..+..+++|+.|+++++ ....+|..+..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~ 291 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPF 291 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhh
Confidence 33444555555555555555555555555555555555432211 122233445555555555542 33445555666
Q ss_pred CcccCEEEeCCccccc--cccccCCCCCCCeEEeecCCCccccccccccCcccceeeecc----------ccCCC--CCc
Q 038265 630 LVSLRMFVVTTKQKSL--LESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINS----------CPRLI--SLP 695 (883)
Q Consensus 630 l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~~~--~l~ 695 (883)
+++|++|++++|.+.. ++..+..+++|++|+++++.....++.....+++|++|++++ |+.+. .++
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 6667777776666431 112345666666666663322222333334566677777763 44333 122
Q ss_pred ccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEecc---CCCCccch------hhhhcCCCCCcc
Q 038265 696 PAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAE---LTQLLELP------QWLLQGSSKTLQ 766 (883)
Q Consensus 696 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~l~------~~~~~~~~~~L~ 766 (883)
.....+++|++|+++. ..++....... ...+.+|+.|++++ ++.++..| ..+ ..+++|+
T Consensus 372 ~l~~~~~~L~~L~l~~-~~l~~~~~~~l---------~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~--~~~~~L~ 439 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYV-SDITNESLESI---------GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL--IGCKKLR 439 (592)
T ss_dssp HHHHHCTTCSEEEEEE-SCCCHHHHHHH---------HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH--HHCTTCC
T ss_pred HHHhhCccCeEEEeec-CCccHHHHHHH---------HhhCCCCcEEEEeecCCCccccCchHHHHHHHHH--HhCCCCC
Confidence 2233466667776632 22221110000 01134677777763 44555432 222 3467788
Q ss_pred EEeecCCCC--CccCCccC-CCCccccccccccccccc-cCCCCCCCCCCcCeeeccCCcchhhh-hCCCCCCCCCccCC
Q 038265 767 MLTIGDCPN--FMALPRSL-KDLEALENLLITSCPKLS-SLPEGMHHLTTLKTLAIEECPALCER-CKPLTGEDWPKIAH 841 (883)
Q Consensus 767 ~L~l~~~~~--l~~lp~~~-~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~ 841 (883)
+|++++|.. ....+..+ ..+++|+.|+|++|.... .++..+..+++|+.|+|++|+ ++.. ... ....+++
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~----~~~~l~~ 514 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA----AVTKLPS 514 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH----HHHHCSS
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH----HHHhcCc
Confidence 888876542 11111112 246778888888776433 234344567788888888887 2221 110 0124567
Q ss_pred CCeeeeCCCcccchhh
Q 038265 842 IPQIDLDGEMIKSSDI 857 (883)
Q Consensus 842 l~~l~l~~n~i~~~~~ 857 (883)
++.+++.+|.++..+.
T Consensus 515 L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 515 LRYLWVQGYRASMTGQ 530 (592)
T ss_dssp CCEEEEESCBCCTTCT
T ss_pred cCeeECcCCcCCHHHH
Confidence 7778888887776643
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=9.4e-17 Score=170.72 Aligned_cols=192 Identities=20% Similarity=0.234 Sum_probs=138.8
Q ss_pred ccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEE
Q 038265 557 SKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 636 (883)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 636 (883)
..+++|+.|+++++.+..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|. +..+| .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence 35678888999988888886 57888889999998886 556666 8888899999998875 44454 68888888899
Q ss_pred EeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCc
Q 038265 637 VVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLD 716 (883)
Q Consensus 637 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~ 716 (883)
++++|.+..++. +..+++|++|++++|.. ..++. ++.+++|+.|++++|.. ..++. +..+++|+.|++++|..
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-- 185 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKLTTLKADDNKI-- 185 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC--
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCCCEEECCCCcc--
Confidence 888888887654 78888888888888754 33433 77888888888888754 34444 77788888888877632
Q ss_pred cCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccccccc
Q 038265 717 LNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITS 796 (883)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~ 796 (883)
..++. + ..+++|++|++++|.. ..++ .+..+++|+.|++++
T Consensus 186 ----------------------------------~~~~~-l--~~l~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 186 ----------------------------------SDISP-L--ASLPNLIEVHLKNNQI-SDVS-PLANTSNLFIVTLTN 226 (308)
T ss_dssp ----------------------------------CCCGG-G--GGCTTCCEEECTTSCC-CBCG-GGTTCTTCCEEEEEE
T ss_pred ----------------------------------CcChh-h--cCCCCCCEEEccCCcc-Cccc-cccCCCCCCEEEccC
Confidence 12221 1 3456777777777653 3333 256677777777777
Q ss_pred ccc
Q 038265 797 CPK 799 (883)
Q Consensus 797 c~~ 799 (883)
|+.
T Consensus 227 N~i 229 (308)
T 1h6u_A 227 QTI 229 (308)
T ss_dssp EEE
T ss_pred Cee
Confidence 764
No 86
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.69 E-value=3.9e-18 Score=149.14 Aligned_cols=78 Identities=28% Similarity=0.477 Sum_probs=74.0
Q ss_pred HHHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHHHHHHhhhcchhhhhhhhhHHHH
Q 038265 9 EKLLEKLGSFAYEELLLFCGVKNDLEKLKETLTTVKSVVLDAEEK--QVHSHQLRDWLEKLKDACYDAEDALDEFEVEDL 86 (883)
Q Consensus 9 ~~~~~kl~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~v~~wl~~l~~~~~d~ed~ld~~~~~~~ 86 (883)
+++++|+++++.+|+.++.||++++++|+++|++|++||.||+.+ +..+++++.|+++||+++||+||+||+|.++..
T Consensus 4 ~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999987 567999999999999999999999999998764
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.8e-18 Score=202.78 Aligned_cols=333 Identities=11% Similarity=0.038 Sum_probs=214.6
Q ss_pred ceEEEEEEeccccc-ccccccCCCCCceeEEeeccCCcc-chhhhhHHhhccCCcccEEEecCcccc-----ccccccCC
Q 038265 509 SVRHLSFVSANALR-NDFASFLPDLGRVRTIMLPIDDER-TSQSFVTSCISKSKSLRVLVLMNSAIE-----VLPRKMGN 581 (883)
Q Consensus 509 ~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~ 581 (883)
+++.+.+..+.... ..+......+++|+.|.+..+... ....++...+..+++|+.|++++|.+. .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 46677665544221 122223346778888888744322 122234555677888999999888875 44555667
Q ss_pred CCCceEecccCCccccccCccccCCCcccEeecCCCCCC---ccCCccccCCcccCEEEeCCccccccccccCCCCCCCe
Q 038265 582 LRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLEL---EELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRF 658 (883)
Q Consensus 582 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 658 (883)
+++|++|++++|. +..+|..+.++++|+.|+++.+... ...+..+..+++|+.|+++.+....+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 8889999998876 5567777888889999998754333 34456677888899999888766677777888899999
Q ss_pred EEeecCCCccc-cccccccCcccceeeeccccCCCCCcccCCCCCCccEEEecc----------CCCCccCCcccccccc
Q 038265 659 LMISDCGNLEY-LFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLK----------CESLDLNLNMEMEEEG 727 (883)
Q Consensus 659 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~----------~~~l~~~~~~~~~~~~ 727 (883)
|++++|..... ++..+..+++|+.|+++++.....++..+..+++|++|++++ |..++.......
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l---- 373 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL---- 373 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH----
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH----
Confidence 99998873222 223467889999999985433344555556788899999984 554432211000
Q ss_pred CCCCCCCCCCCcceEEeccCCCCccc-hhhhhcCCCCCccEEeecC---CCCCccCC------ccCCCCccccccccccc
Q 038265 728 SHHDCNNVRSHLRTLCVAELTQLLEL-PQWLLQGSSKTLQMLTIGD---CPNFMALP------RSLKDLEALENLLITSC 797 (883)
Q Consensus 728 ~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~~~L~~L~l~~---~~~l~~lp------~~~~~l~~L~~L~L~~c 797 (883)
...+.+|+.|++.. ..++.- +..+ ...+++|+.|++++ |+.++..| ..+..+++|++|++++|
T Consensus 374 -----~~~~~~L~~L~l~~-~~l~~~~~~~l-~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 374 -----AQGCQELEYMAVYV-SDITNESLESI-GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp -----HHHCTTCSEEEEEE-SCCCHHHHHHH-HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred -----HhhCccCeEEEeec-CCccHHHHHHH-HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 12245899999954 344432 2232 23478999999984 44555433 22556899999999876
Q ss_pred cc--cccCCCCC-CCCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhh
Q 038265 798 PK--LSSLPEGM-HHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDI 857 (883)
Q Consensus 798 ~~--l~~lp~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 857 (883)
.. ....+..+ ..+++|+.|++++|+.-...... .....++|+.|++.+|.+.....
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME----FSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH----HHTCCTTCCEEEEESCCCBHHHH
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH----HHhcCcccCeeeccCCCCcHHHH
Confidence 63 22111112 34789999999998632211111 01245789999999999865543
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.3e-16 Score=163.10 Aligned_cols=199 Identities=17% Similarity=0.215 Sum_probs=151.6
Q ss_pred CcccEEEecCcccccccc-ccCCCCCceEecccCCccccccCc-cccCCCcccEeecCCCCCCccCC-ccccCCcccCEE
Q 038265 560 KSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCLELEELP-KDIRYLVSLRMF 636 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L 636 (883)
++|++|++++|.+..+|. .+..+++|++|++++|..++.+|. .+.++++|++|++++|+.+..+| ..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998877 688999999999999864555554 78899999999999844555555 578899999999
Q ss_pred EeCCccccccccccCCCCCCC---eEEeecCCCcccccc-ccccCcccc-eeeeccccCCCCCcccCCCCCCccEEEecc
Q 038265 637 VVTTKQKSLLESGIGCLSSLR---FLMISDCGNLEYLFE-DIDQLSVLR-SLVINSCPRLISLPPAMKYLSSLETLILLK 711 (883)
Q Consensus 637 ~l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~-~l~~l~~L~-~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~ 711 (883)
++++|.+..+|. +..+++|+ .|++++|..++.++. .+..+++|+ .|++++|... .+|......++|+.|++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 999999998876 88888888 999999845566654 588999999 9999987654 6665444447788888877
Q ss_pred CCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCC-CCccEEeecCCCCCccCCccCCCCcccc
Q 038265 712 CESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSS-KTLQMLTIGDCPNFMALPRSLKDLEALE 790 (883)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~-~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 790 (883)
|.. ++.++...+ ..+ ++|+.|++++|+ +..+|.. .+++|+
T Consensus 189 n~~-----------------------------------l~~i~~~~~-~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~ 229 (239)
T 2xwt_C 189 NKY-----------------------------------LTVIDKDAF-GGVYSGPSLLDVSQTS-VTALPSK--GLEHLK 229 (239)
T ss_dssp CTT-----------------------------------CCEECTTTT-TTCSBCCSEEECTTCC-CCCCCCT--TCTTCS
T ss_pred CCC-----------------------------------cccCCHHHh-hccccCCcEEECCCCc-cccCChh--HhccCc
Confidence 632 233332221 455 788888888875 4566654 678888
Q ss_pred ccccccccc
Q 038265 791 NLLITSCPK 799 (883)
Q Consensus 791 ~L~L~~c~~ 799 (883)
.|++++|..
T Consensus 230 ~L~l~~~~~ 238 (239)
T 2xwt_C 230 ELIARNTWT 238 (239)
T ss_dssp EEECTTC--
T ss_pred eeeccCccC
Confidence 888887753
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=6.8e-19 Score=194.32 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=118.5
Q ss_pred hhHHhhccCCcccEEEecCccccc-----cccccCCCCCceEecccCCc---cccccCccc-------cCCCcccEeecC
Q 038265 551 FVTSCISKSKSLRVLVLMNSAIEV-----LPRKMGNLRQLRHLDLSGNR---KIKKLPNSI-------CELQSLQTLNLG 615 (883)
Q Consensus 551 ~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~---~~~~lp~~~-------~~l~~L~~L~L~ 615 (883)
.+...+..+++|++|+|++|.+.. ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344567788999999999998864 44557789999999999863 222445444 688999999999
Q ss_pred CCCCCc----cCCccccCCcccCEEEeCCccccc-----cccccCCC---------CCCCeEEeecCCCc-cccc---cc
Q 038265 616 DCLELE----ELPKDIRYLVSLRMFVVTTKQKSL-----LESGIGCL---------SSLRFLMISDCGNL-EYLF---ED 673 (883)
Q Consensus 616 ~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~ 673 (883)
+|.... .+|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|... ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 887665 477788889999999999998762 22233344 88999999887654 2333 45
Q ss_pred cccCcccceeeeccccCCC-----CCcccCCCCCCccEEEeccCC
Q 038265 674 IDQLSVLRSLVINSCPRLI-----SLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 674 l~~l~~L~~L~l~~~~~~~-----~l~~~l~~l~~L~~L~L~~~~ 713 (883)
+..+++|+.|++++|.... ..|..+..+++|+.|+|++|.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 6678888889888876542 234367778888888888775
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=169.78 Aligned_cols=137 Identities=14% Similarity=0.033 Sum_probs=67.0
Q ss_pred CCcccEEEecCcccc-cccccc--CCCCCceEecccCCccccccC----ccccCCCcccEeecCCCCCCccCCccccCCc
Q 038265 559 SKSLRVLVLMNSAIE-VLPRKM--GNLRQLRHLDLSGNRKIKKLP----NSICELQSLQTLNLGDCLELEELPKDIRYLV 631 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 631 (883)
+++|++|++++|.+. ..|..+ ..+++|++|++++|.+.+..| ..+..+++|++|++++|...+..|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 345666666666654 334444 556666666666665443322 2233456666666666555444445555555
Q ss_pred ccCEEEeCCccccc---cc--cccCCCCCCCeEEeecCCCcccccc----ccccCcccceeeeccccCCCCCcc
Q 038265 632 SLRMFVVTTKQKSL---LE--SGIGCLSSLRFLMISDCGNLEYLFE----DIDQLSVLRSLVINSCPRLISLPP 696 (883)
Q Consensus 632 ~L~~L~l~~~~~~~---~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~l~~ 696 (883)
+|++|++++|.+.. ++ ..+..+++|++|++++|.. +.++. .++.+++|++|+|++|......|.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 66666665555431 11 1224455555555555432 22221 123445555555555443333333
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=5.9e-16 Score=167.94 Aligned_cols=238 Identities=18% Similarity=0.205 Sum_probs=162.5
Q ss_pred cEEEecCccccccccccCCCCCceEecccCCccccccCc-cccCCCcccEeecCCCCCCccCCc-cccCCcccCE-EEeC
Q 038265 563 RVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCLELEELPK-DIRYLVSLRM-FVVT 639 (883)
Q Consensus 563 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~-L~l~ 639 (883)
++++.++++++.+|..+ ..++++|+|++|. ++.+|. .|.++++|++|+|++|...+.+|. .+.++++|.. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677777777777766 3577888888776 556664 567788888888887776666654 4567777665 4455
Q ss_pred Ccccccc-ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcc-cCCCCC-CccEEEeccCCCCc
Q 038265 640 TKQKSLL-ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPP-AMKYLS-SLETLILLKCESLD 716 (883)
Q Consensus 640 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~l~~l~-~L~~L~L~~~~~l~ 716 (883)
.|.+..+ |..+..+++|+.|++++|......+..+....++..|++.++..+..++. .+..+. .++.|++++|..-.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5666644 45667788888888887654433333445556677777777666666554 344443 57778887765432
Q ss_pred cCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCcccccccccc
Q 038265 717 LNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITS 796 (883)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~ 796 (883)
+.. ......+|..|.+.+++.++.+|...+ ..+++|++|++++|. ++.+|.. .+.+|+.|.+.+
T Consensus 169 i~~------------~~f~~~~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L~~l~ 232 (350)
T 4ay9_X 169 IHN------------SAFNGTQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRTR-IHSLPSY--GLENLKKLRARS 232 (350)
T ss_dssp ECT------------TSSTTEEEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTSC-CCCCCSS--SCTTCCEEECTT
T ss_pred CCh------------hhccccchhHHhhccCCcccCCCHHHh-ccCcccchhhcCCCC-cCccChh--hhccchHhhhcc
Confidence 221 122234678888887778888887553 677899999999985 6677753 366777777777
Q ss_pred ccccccCCCCCCCCCCcCeeeccC
Q 038265 797 CPKLSSLPEGMHHLTTLKTLAIEE 820 (883)
Q Consensus 797 c~~l~~lp~~l~~l~~L~~L~l~~ 820 (883)
|..++.+|. +..+++|+.+++.+
T Consensus 233 ~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 233 TYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CCCcCcCCC-chhCcChhhCcCCC
Confidence 788889985 78899999999864
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=3.3e-18 Score=188.76 Aligned_cols=245 Identities=16% Similarity=0.128 Sum_probs=173.4
Q ss_pred ccCCCCCceeEEeeccCCccc-hhhhhHHhhccCCcccEEEecCccccc----cccc-------cCCCCCceEecccCCc
Q 038265 527 SFLPDLGRVRTIMLPIDDERT-SQSFVTSCISKSKSLRVLVLMNSAIEV----LPRK-------MGNLRQLRHLDLSGNR 594 (883)
Q Consensus 527 ~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~----lp~~-------~~~l~~L~~L~l~~~~ 594 (883)
..+..+++|+.|.+..+.... ....+...+..+++|++|+|++|.+.. +|.. +..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 445567889999997443321 122344567889999999999986553 3443 3788999999999998
Q ss_pred ccc----ccCccccCCCcccEeecCCCCCCcc----CCccccCC---------cccCEEEeCCcccc--ccc---cccCC
Q 038265 595 KIK----KLPNSICELQSLQTLNLGDCLELEE----LPKDIRYL---------VSLRMFVVTTKQKS--LLE---SGIGC 652 (883)
Q Consensus 595 ~~~----~lp~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l---------~~L~~L~l~~~~~~--~~~---~~~~~ 652 (883)
+.. .+|..+.++++|++|+|++|..... ++..+..+ ++|++|++++|.+. .++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 655 4788889999999999999876433 33334444 89999999999986 333 35678
Q ss_pred CCCCCeEEeecCCCcc-----ccccccccCcccceeeeccccCC----CCCcccCCCCCCccEEEeccCCCCccCCcccc
Q 038265 653 LSSLRFLMISDCGNLE-----YLFEDIDQLSVLRSLVINSCPRL----ISLPPAMKYLSSLETLILLKCESLDLNLNMEM 723 (883)
Q Consensus 653 l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~----~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 723 (883)
+++|++|++++|.... ..+..+..+++|+.|+|++|... ..+|..+..+++|++|+|++|..-..
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~------ 259 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR------ 259 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH------
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh------
Confidence 8999999999986432 23337889999999999998864 56788888999999999998752211
Q ss_pred ccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCc----cCCccC-CCCcccccccccccc
Q 038265 724 EEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFM----ALPRSL-KDLEALENLLITSCP 798 (883)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~----~lp~~~-~~l~~L~~L~L~~c~ 798 (883)
....++..+..+.+++|++|+|++|.... .+|..+ .++++|++|+|++|+
T Consensus 260 -------------------------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 -------------------------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -------------------------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -------------------------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 01123333311336777777777776544 366555 456777777777777
Q ss_pred cccc
Q 038265 799 KLSS 802 (883)
Q Consensus 799 ~l~~ 802 (883)
....
T Consensus 315 l~~~ 318 (386)
T 2ca6_A 315 FSEE 318 (386)
T ss_dssp SCTT
T ss_pred CCcc
Confidence 5443
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=169.63 Aligned_cols=128 Identities=14% Similarity=0.150 Sum_probs=67.6
Q ss_pred cccEEEecCccccc-----cccccCCCCCceEecccCCccccccCccc--cCCCcccEeecCCCCCCccCC----ccccC
Q 038265 561 SLRVLVLMNSAIEV-----LPRKMGNLRQLRHLDLSGNRKIKKLPNSI--CELQSLQTLNLGDCLELEELP----KDIRY 629 (883)
Q Consensus 561 ~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~~~--~~l~~L~~L~L~~~~~~~~lp----~~~~~ 629 (883)
.++.|.+.++.+.. ++.. ..+.+|++|++++|...+..|..+ ..+++|++|+|++|...+..| ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45556666555431 1111 123457777777776555666655 667777777777765554433 22344
Q ss_pred CcccCEEEeCCccccccc-cccCCCCCCCeEEeecCCCccc--cc--cccccCcccceeeecccc
Q 038265 630 LVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISDCGNLEY--LF--EDIDQLSVLRSLVINSCP 689 (883)
Q Consensus 630 l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~--~~l~~l~~L~~L~l~~~~ 689 (883)
+++|++|++++|.+...+ ..++.+++|++|++++|..... ++ ..++.+++|++|++++|.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 556666666666555332 3455555666666655543221 11 112445555555555543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=6.7e-16 Score=164.11 Aligned_cols=193 Identities=16% Similarity=0.223 Sum_probs=147.1
Q ss_pred cCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCe
Q 038265 579 MGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRF 658 (883)
Q Consensus 579 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 658 (883)
...+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.+..++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 3457789999999886 56677 48889999999999874 445555 888899999999998888765 6788888899
Q ss_pred EEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCC
Q 038265 659 LMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSH 738 (883)
Q Consensus 659 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 738 (883)
|++++|.. ..++ .+..+++|+.|++++|... .++. +..+++|+.|++++|.
T Consensus 112 L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~------------------------- 162 (308)
T 1h6u_A 112 LDLTSTQI-TDVT-PLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQ------------------------- 162 (308)
T ss_dssp EECTTSCC-CCCG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSC-------------------------
T ss_pred EECCCCCC-CCch-hhcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCc-------------------------
Confidence 98888764 3444 3788888888888887643 3443 6677778888777652
Q ss_pred cceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeec
Q 038265 739 LRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAI 818 (883)
Q Consensus 739 L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 818 (883)
+..++. + ..+++|+.|++++|.. ..++. +..+++|++|+|++|... .++. +..+++|+.|++
T Consensus 163 -----------l~~~~~-l--~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~l 224 (308)
T 1h6u_A 163 -----------VSDLTP-L--ANLSKLTTLKADDNKI-SDISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTL 224 (308)
T ss_dssp -----------CCCCGG-G--TTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEE
T ss_pred -----------CCCChh-h--cCCCCCCEEECCCCcc-CcChh-hcCCCCCCEEEccCCccC-cccc-ccCCCCCCEEEc
Confidence 233333 2 5778999999999964 45554 788999999999999854 4543 789999999999
Q ss_pred cCCcc
Q 038265 819 EECPA 823 (883)
Q Consensus 819 ~~c~~ 823 (883)
++|+.
T Consensus 225 ~~N~i 229 (308)
T 1h6u_A 225 TNQTI 229 (308)
T ss_dssp EEEEE
T ss_pred cCCee
Confidence 99974
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=3.9e-17 Score=178.23 Aligned_cols=240 Identities=13% Similarity=0.042 Sum_probs=146.9
Q ss_pred hhHHhhccCCcccEEEecCccccccc-----cccCCCC-CceEecccCCccccccCccccCC-----CcccEeecCCCCC
Q 038265 551 FVTSCISKSKSLRVLVLMNSAIEVLP-----RKMGNLR-QLRHLDLSGNRKIKKLPNSICEL-----QSLQTLNLGDCLE 619 (883)
Q Consensus 551 ~~~~~~~~~~~L~~L~l~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~L~~~~~ 619 (883)
..+.++...++|++|++++|.+...+ ..+..++ +|++|++++|.+....+..+..+ ++|++|+|++|..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 44555666667888888888887665 4566777 78888888887555555555554 8888888888765
Q ss_pred CccCCccc----cCC-cccCEEEeCCcccccccc-----ccCC-CCCCCeEEeecCCCcc----ccccccccCc-cccee
Q 038265 620 LEELPKDI----RYL-VSLRMFVVTTKQKSLLES-----GIGC-LSSLRFLMISDCGNLE----YLFEDIDQLS-VLRSL 683 (883)
Q Consensus 620 ~~~lp~~~----~~l-~~L~~L~l~~~~~~~~~~-----~~~~-l~~L~~L~l~~~~~~~----~~~~~l~~l~-~L~~L 683 (883)
.+..+..+ ..+ ++|+.|++++|.+...+. .+.. .++|++|++++|.... .++..+..++ +|++|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 55544433 334 788888888888764432 2333 3578888888775432 2333444554 78888
Q ss_pred eeccccCCCCCcc----cCCCC-CCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhh
Q 038265 684 VINSCPRLISLPP----AMKYL-SSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLL 758 (883)
Q Consensus 684 ~l~~~~~~~~l~~----~l~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 758 (883)
+|++|......+. .+..+ ++|++|+|++|..-. .....++..+.
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------------------------------~~~~~l~~~l~ 221 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-------------------------------KSYAELAYIFS 221 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-------------------------------SCHHHHHHHHH
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh-------------------------------hHHHHHHHHHh
Confidence 8877765443332 23344 477777777764211 01122344331
Q ss_pred cCCCCCccEEeecCCCCCccC----CccCCCCccccccccccccc-------cccCCCCCCCCCCcCeeeccCCc
Q 038265 759 QGSSKTLQMLTIGDCPNFMAL----PRSLKDLEALENLLITSCPK-------LSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 759 ~~~~~~L~~L~l~~~~~l~~l----p~~~~~l~~L~~L~L~~c~~-------l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
...++|++|+|++|.....- ...+..+++|++|+|++|.. +..++..+.++++|+.|++++|+
T Consensus 222 -~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 222 -SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 12357777777777543321 23345667777777777762 22344456667777777777775
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=4.4e-15 Score=152.91 Aligned_cols=152 Identities=18% Similarity=0.118 Sum_probs=111.7
Q ss_pred CcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeC
Q 038265 560 KSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 639 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 639 (883)
...+.++++++.+..+|..+. .+|++|++++|.+.+..|..+.++++|++|+|++|...+..|..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457788999998988888765 588999999887666666678888999999998877666666667888888888888
Q ss_pred Cccccccc-cccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 640 TKQKSLLE-SGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 640 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
+|.+..++ ..+..+++|++|++++|......+..+..+++|+.|+|++|......+..+..+++|+.|+|++|.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 88887554 356778888888888765443333345777888888887765443333456777777777777653
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=8.1e-15 Score=158.96 Aligned_cols=245 Identities=16% Similarity=0.113 Sum_probs=177.1
Q ss_pred cCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCc-cccCCcccCEEEeCCcccc-ccc-cccCCCCC
Q 038265 579 MGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPK-DIRYLVSLRMFVVTTKQKS-LLE-SGIGCLSS 655 (883)
Q Consensus 579 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~-~~~-~~~~~l~~ 655 (883)
++.|.. +.++.+++. +..+|..+ .++|++|+|++|. +..+|. .|.++++|++|++++|.+. .++ ..+.++++
T Consensus 6 ~C~C~~-~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESK-VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp SSEEET-TEEEEESTT-CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred ccEeeC-CEEEecCCC-CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 344432 567777665 77889866 4689999999865 556665 6899999999999999874 344 45788999
Q ss_pred CCeEEeecCCCcccc-ccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCC
Q 038265 656 LRFLMISDCGNLEYL-FEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNN 734 (883)
Q Consensus 656 L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 734 (883)
|.++....++.+..+ +..+..+++|+.|++++|......+..+....++..|++.++..+....... ...
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~---------f~~ 151 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS---------FVG 151 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS---------STT
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc---------hhh
Confidence 887666665666666 5678999999999999987655444455666778889988765554322110 012
Q ss_pred CCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCc-cCCCCccccccccccccccccCCCCCCCCCCc
Q 038265 735 VRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPR-SLKDLEALENLLITSCPKLSSLPEGMHHLTTL 813 (883)
Q Consensus 735 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L 813 (883)
....++.|+++++ .++.++... ....+|+.|++++|+.++.+|. .+..+++|++|+|++|. +..+|.. .+.+|
T Consensus 152 ~~~~l~~L~L~~N-~i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L 225 (350)
T 4ay9_X 152 LSFESVILWLNKN-GIQEIHNSA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--GLENL 225 (350)
T ss_dssp SBSSCEEEECCSS-CCCEECTTS--STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--SCTTC
T ss_pred cchhhhhhccccc-cccCCChhh--ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--hhccc
Confidence 2336888999986 678888776 3557899999998888999986 46899999999999986 6778763 46777
Q ss_pred CeeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCC
Q 038265 814 KTLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDG 849 (883)
Q Consensus 814 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~ 849 (883)
+.|.+.+|..++..+ ....+.+|..+++..
T Consensus 226 ~~L~~l~~~~l~~lP------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP------TLEKLVALMEASLTY 255 (350)
T ss_dssp CEEECTTCTTCCCCC------CTTTCCSCCEEECSC
T ss_pred hHhhhccCCCcCcCC------CchhCcChhhCcCCC
Confidence 788877776654332 245567777777654
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=1.3e-17 Score=195.72 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=41.2
Q ss_pred CCCCccEEeecCCCCCccCCccCC-CCccccccccccccccccCCCCC-CCCCCcCeeeccCCcchhhhhCCCCCCCCCc
Q 038265 761 SSKTLQMLTIGDCPNFMALPRSLK-DLEALENLLITSCPKLSSLPEGM-HHLTTLKTLAIEECPALCERCKPLTGEDWPK 838 (883)
Q Consensus 761 ~~~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~L~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 838 (883)
.+++|+.|++++ ......+..+. .+++|+.|+|++|......+..+ ..+++|+.|++++|+......... ...
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~----~~~ 504 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN----ASK 504 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT----GGG
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH----HHh
Confidence 445666666654 11111111122 25566666666665322211111 345666666666665421111110 123
Q ss_pred cCCCCeeeeCCCcccc
Q 038265 839 IAHIPQIDLDGEMIKS 854 (883)
Q Consensus 839 ~~~l~~l~l~~n~i~~ 854 (883)
+++++.|++.+|.+..
T Consensus 505 l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 505 LETMRSLWMSSCSVSF 520 (594)
T ss_dssp GGGSSEEEEESSCCBH
T ss_pred CCCCCEEeeeCCCCCH
Confidence 4566666666666643
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=6.5e-17 Score=176.49 Aligned_cols=260 Identities=15% Similarity=0.081 Sum_probs=162.5
Q ss_pred EEEecCccccc-cccccCCCCCceEecccCCccccccC----ccccCCC-cccEeecCCCCCCccCCccccCC-----cc
Q 038265 564 VLVLMNSAIEV-LPRKMGNLRQLRHLDLSGNRKIKKLP----NSICELQ-SLQTLNLGDCLELEELPKDIRYL-----VS 632 (883)
Q Consensus 564 ~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~lp----~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l-----~~ 632 (883)
+++++++.+.. +|..+....+|++|++++|.+....+ ..+..++ +|++|+|++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677777764 44455555669999999887433333 5667787 89999998886665556555554 78
Q ss_pred cCEEEeCCcccccccc-----ccCCC-CCCCeEEeecCCCccccccc----ccc-CcccceeeeccccCCC----CCccc
Q 038265 633 LRMFVVTTKQKSLLES-----GIGCL-SSLRFLMISDCGNLEYLFED----IDQ-LSVLRSLVINSCPRLI----SLPPA 697 (883)
Q Consensus 633 L~~L~l~~~~~~~~~~-----~~~~l-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~----~l~~~ 697 (883)
|++|++++|.+...+. .+..+ ++|++|++++|......+.. +.. .++|++|+|++|.... .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888774332 13344 77888888877643332222 223 2577777777776542 23333
Q ss_pred CCCCC-CccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCC-CCccEEeecCCCC
Q 038265 698 MKYLS-SLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSS-KTLQMLTIGDCPN 775 (883)
Q Consensus 698 l~~l~-~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~-~~L~~L~l~~~~~ 775 (883)
+..++ +|++|+|++|..-.. ....+...+ ..+ ++|++|+|++|..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~-------------------------------~~~~l~~~l--~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASK-------------------------------NCAELAKFL--ASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGS-------------------------------CHHHHHHHH--HTSCTTCCEEECTTSCG
T ss_pred HhcCCccccEeeecCCCCchh-------------------------------hHHHHHHHH--HhCCCCCCEEECCCCCC
Confidence 44444 677777766532110 011122222 234 5899999999974
Q ss_pred Cc----cCCccCCC-Ccccccccccccccccc----CCCCCCCCCCcCeeeccCCc--chhhhhCCCCCCCCCccCCCCe
Q 038265 776 FM----ALPRSLKD-LEALENLLITSCPKLSS----LPEGMHHLTTLKTLAIEECP--ALCERCKPLTGEDWPKIAHIPQ 844 (883)
Q Consensus 776 l~----~lp~~~~~-l~~L~~L~L~~c~~l~~----lp~~l~~l~~L~~L~l~~c~--~l~~~~~~~~~~~~~~~~~l~~ 844 (883)
.. .++..+.. .++|++|+|++|..... +...+..+++|+.|++++|. .++..........+...+++..
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 33 14555554 45999999999975442 22345778999999999996 1111100011223567788999
Q ss_pred eeeCCCcccchh
Q 038265 845 IDLDGEMIKSSD 856 (883)
Q Consensus 845 l~l~~n~i~~~~ 856 (883)
+++++|.+....
T Consensus 289 LdL~~N~l~~~~ 300 (362)
T 3goz_A 289 VDKNGKEIHPSH 300 (362)
T ss_dssp ECTTSCBCCGGG
T ss_pred EecCCCcCCCcc
Confidence 999999998774
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=3.7e-15 Score=170.00 Aligned_cols=134 Identities=23% Similarity=0.244 Sum_probs=109.5
Q ss_pred CCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEe
Q 038265 559 SKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 638 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 638 (883)
..+|+.|++++|.+..+|..+. ++|++|++++|. +..+| ..+++|++|++++|...+ +|. +.. +|++|++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred cCCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 3589999999999999998774 789999999987 56888 457999999999976554 887 655 9999999
Q ss_pred CCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 639 TTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 639 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
++|.+..+|. .+++|+.|++++|.. +.+|. .+++|+.|+|++|.. ..+|. +. ++|+.|+|++|.
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSC
T ss_pred CCCcCCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCC
Confidence 9999998776 689999999998764 44665 678999999998764 44777 54 889999998874
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=4.3e-17 Score=191.19 Aligned_cols=332 Identities=12% Similarity=0.093 Sum_probs=186.0
Q ss_pred ceEEEEEEecccccccccccCC-CCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccc-----cccccCCC
Q 038265 509 SVRHLSFVSANALRNDFASFLP-DLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEV-----LPRKMGNL 582 (883)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~~~~l 582 (883)
.++++.+..+...... ...+. .+++|+.|.+..+. ......++..+.++++|++|++++|.+.. ++.....+
T Consensus 106 ~L~~L~L~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDC-LELIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TCCEEEEESCBCCHHH-HHHHHHHCTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCeEEeeCcEEcHHH-HHHHHHhCCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4666666655432221 22222 46788888887432 12223345556678999999999888653 33344567
Q ss_pred CCceEecccCCc-cc--cccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccc-------cccccccC-
Q 038265 583 RQLRHLDLSGNR-KI--KKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQK-------SLLESGIG- 651 (883)
Q Consensus 583 ~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-------~~~~~~~~- 651 (883)
++|++|++++|. .+ ..++..+..+++|++|++++|...+.+|..+.++++|++|+++.+.. ..++..+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 789999998875 11 12333345678999999998866666777778888888888654421 11111222
Q ss_pred -----------------------CCCCCCeEEeecCCCccc-cccccccCcccceeeeccccCCCCCcccCCCCCCccEE
Q 038265 652 -----------------------CLSSLRFLMISDCGNLEY-LFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETL 707 (883)
Q Consensus 652 -----------------------~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L 707 (883)
.+++|++|++++|..... +...+..+++|++|++++|.....++.....+++|++|
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEE
Confidence 455666666666552111 11223456666666666652211222223345666666
Q ss_pred EeccCC--------CCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeec-----CCC
Q 038265 708 ILLKCE--------SLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIG-----DCP 774 (883)
Q Consensus 708 ~L~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~-----~~~ 774 (883)
++.+|. .++...... ....+.+|+.|.+.. +.++......+...+++|+.|+++ +|.
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~---------l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVS---------VSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHH---------HHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred EEecCcccccccCCCCCHHHHHH---------HHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 664431 111000000 001235778885544 344432222212356889999998 455
Q ss_pred CCccCCc------cCCCCccccccccccccccccCCCCCC-CCCCcCeeeccCCcchhhhhCCCCCCCCCccCCCCeeee
Q 038265 775 NFMALPR------SLKDLEALENLLITSCPKLSSLPEGMH-HLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIDL 847 (883)
Q Consensus 775 ~l~~lp~------~~~~l~~L~~L~L~~c~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l 847 (883)
.++..|. .+..+++|+.|+|++ ......+..+. .+++|+.|++++|.......... ....++|+.|++
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l----~~~~~~L~~L~L 488 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV----LSGCDSLRKLEI 488 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH----HHHCTTCCEEEE
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH----HhcCCCcCEEEC
Confidence 5654432 245678899999976 22222222222 37889999999987422211110 023578999999
Q ss_pred CCCcccchhh
Q 038265 848 DGEMIKSSDI 857 (883)
Q Consensus 848 ~~n~i~~~~~ 857 (883)
.+|.+.....
T Consensus 489 ~~n~~~~~~~ 498 (594)
T 2p1m_B 489 RDCPFGDKAL 498 (594)
T ss_dssp ESCSCCHHHH
T ss_pred cCCCCcHHHH
Confidence 9999865443
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=2e-14 Score=148.05 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=68.9
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccc-cccCCCCCCCeEEee
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMIS 662 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 662 (883)
..++++++++. +..+|..+. ++|+.|+|++|...+..|..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45667777654 566666544 56777777776655555556666667777777666665433 235556666666666
Q ss_pred cCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEecc
Q 038265 663 DCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLK 711 (883)
Q Consensus 663 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~ 711 (883)
+|......+..+..+++|+.|+|++|......+..+..+++|+.|+|++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 5543332233445555555555555443322222334444455544444
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=8.3e-15 Score=146.13 Aligned_cols=124 Identities=21% Similarity=0.127 Sum_probs=68.4
Q ss_pred cEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcc
Q 038265 563 RVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 642 (883)
Q Consensus 563 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 642 (883)
+.++.+++.+..+|..+ .++|++|++++|.+....+..+..+++|++|++++|...+..+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56677777777777655 3477888888776443333345677777777777764443333334566666666666665
Q ss_pred cccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccc
Q 038265 643 KSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSC 688 (883)
Q Consensus 643 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (883)
+..++. .+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 554432 2345555555555554322211222344444444444443
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.9e-15 Score=146.28 Aligned_cols=151 Identities=16% Similarity=0.193 Sum_probs=126.5
Q ss_pred ccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEE
Q 038265 557 SKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 636 (883)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 636 (883)
..+++|+.|++++|.+..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|...+..|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45678999999999999888 78889999999999884 55554 58889999999999987777788889999999999
Q ss_pred EeCCccccc-cccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 637 VVTTKQKSL-LESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 637 ~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
++++|.+.. .+..+..+++|++|++++|..++.++ .+..+++|+.|++++|.. ..++ .+..+++|+.|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcc
Confidence 999999884 56678899999999999987667776 688999999999998764 3455 67888999999998875
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=1.8e-14 Score=151.55 Aligned_cols=145 Identities=21% Similarity=0.296 Sum_probs=79.9
Q ss_pred cCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEE
Q 038265 558 KSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 637 (883)
Q Consensus 558 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 637 (883)
.+++|+.|++++|.+..++ .+..+++|++|++++|. +..++. +.++++|++|++++|.. ..+| .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEE
Confidence 4566667777776666664 35666667777777665 344444 66666677777766543 3333 356666666666
Q ss_pred eCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccC
Q 038265 638 VTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 638 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~ 712 (883)
+++|.+..++ .+..+++|+.|++++|... .+ ..++.+++|+.|++++|... .++. +..+++|+.|++++|
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCccc-cchh-hcCCCccCEEECCCC
Confidence 6666655542 4555566666666554322 22 34455555555555554332 2222 444555555555443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=1.2e-14 Score=167.70 Aligned_cols=146 Identities=21% Similarity=0.280 Sum_probs=81.6
Q ss_pred ccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEE
Q 038265 557 SKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 636 (883)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 636 (883)
..+++|+.|++++|.+..+| .+..+++|+.|+|++|. +..+|. ++.+++|+.|+|++|.. ..+| .+..+++|++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEE
Confidence 34566666666666666664 45666666666666665 333443 66666666666666533 3333 45666666666
Q ss_pred EeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccC
Q 038265 637 VVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 637 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~ 712 (883)
++++|.+..++ .+..+++|+.|+|++|... .+ ..++.+++|+.|+|++|......| +..+++|+.|+|++|
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 66666665543 3555666666666655432 22 345555666666665554333222 555555555555554
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=5.3e-14 Score=141.32 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=126.5
Q ss_pred cEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcc
Q 038265 563 RVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 642 (883)
Q Consensus 563 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 642 (883)
+.++++++.+..+|..+. .+|+.|++++|.+....|..+..+++|++|+|++|...+..|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 678999999999998765 689999999987544444578899999999999987777778899999999999999999
Q ss_pred ccccccc-cCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 643 KSLLESG-IGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 643 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
+..+|.. +..+++|+.|++++|......+..+..+++|+.|+|++|......+..+..+++|+.|+|++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9977654 6889999999999987666667788999999999999988666556678889999999999875
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=3.4e-14 Score=164.07 Aligned_cols=147 Identities=22% Similarity=0.272 Sum_probs=78.7
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
+..+++|+.|+|++|.+..+|. +..+++|++|+|++|. +..+| .+..+++|+.|+|++|... .+ ..+..+++|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCE
Confidence 4555666666666666555544 5555666666666554 33344 3555666666666554333 23 24555566666
Q ss_pred EEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccC
Q 038265 636 FVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 636 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~ 712 (883)
|++++|.+..+ ..+..+++|+.|+|++|.... ++. +..+++|+.|+|++|... .+| .+..+++|+.|+|++|
T Consensus 136 L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 136 LYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSE
T ss_pred EECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCC
Confidence 66666655544 345555666666665554332 222 555566666666555432 232 3555556666665554
No 109
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.52 E-value=7.9e-14 Score=155.21 Aligned_cols=290 Identities=13% Similarity=0.029 Sum_probs=167.1
Q ss_pred CCccccchhhHHHHHHHH-hcCCCCCCCCeEEEEE--EcCCCCcHHHHHHHHHccC-------------------CCCcH
Q 038265 163 TSDIIGRYEDGEKIIELL-MQTSDGESETVSVIPI--VGIGGLGKTALAKLVYNDQ-------------------KDFGK 220 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~-------------------~~~~~ 220 (883)
+..++||+++++++.+++ .....+.......+.| +|++|+||||||+++++.. ...+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4321110012345666 9999999999999987642 12345
Q ss_pred HHHHHHHHHHhhCCCC-CCCChHHHHHHHHHHcC--CCceEEEEeCCCCCC------hhhHHHHHHhcCCC---C--CCC
Q 038265 221 RQIMTKIINSVIGGNH-GNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNED------PRAWGELKSLLLGG---A--EGS 286 (883)
Q Consensus 221 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 286 (883)
..++..++.++..... ...+...+...+.+.+. +++++|||||+|..+ ...+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 6777788777643221 12345556666666664 679999999997532 22333333333211 1 334
Q ss_pred EEEEeecChHHHHHHc-------ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhC------CC
Q 038265 287 KILVTTRSNKVALIMG-------TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCR------GI 353 (883)
Q Consensus 287 ~iivTtr~~~v~~~~~-------~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~------gl 353 (883)
.||+||+...+..... ..- ...+.+.+++.++++++|...+...... ..-..+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~-~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQI-GFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhc-CCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCc
Confidence 5888887665432221 111 1239999999999999998664221111 1112356678889999 99
Q ss_pred chHHHHHHhhhc------CC--CCHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhhhHHhhhhccCC--CCcccc
Q 038265 354 PLAVRTVGSLLY------GS--TDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFP--KDYKFA 423 (883)
Q Consensus 354 PLai~~~~~~L~------~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp--~~~~~~ 423 (883)
|..+..++.... +. -+.+.+..+..... . ...+.-++..||++.+.++..++.+. .+..++
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----~-----~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----A-----ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----c-----cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 976555443211 11 12233332222110 0 12344467889999999999888754 223454
Q ss_pred hhHHHHHH--HH-hcCCcCCCCCchHHHHHHHHHHHHHhCCCceecC
Q 038265 424 SVHLVQFW--MA-QGLLQSPNENEELEKIGMRYFKELCSRSFFQDLG 467 (883)
Q Consensus 424 ~~~Li~~w--~a-~gli~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 467 (883)
...+...+ ++ .-+ ... .........+++.|.+.+++....
T Consensus 330 ~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMY-NVK---PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHHHS-CCC---CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHhhc-CCC---CCCHHHHHHHHHHHHhCCCEEeec
Confidence 44444333 22 111 100 011234567899999999997654
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=1.5e-16 Score=182.69 Aligned_cols=203 Identities=16% Similarity=0.145 Sum_probs=124.3
Q ss_pred ccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEE
Q 038265 557 SKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 636 (883)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 636 (883)
..+++|+.|+|++|.++.+|..+++|++|+.|++++|..+..+|..+ ..+...+..|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 34677777778777777777777777777777776543111111100 0011223334444444444444
Q ss_pred E-eC-------------CccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCC
Q 038265 637 V-VT-------------TKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLS 702 (883)
Q Consensus 637 ~-l~-------------~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~ 702 (883)
+ ++ .|.+..++. ..|+.|++++|. ++.+|. ++.+++|+.|+|++|... .+|..+..++
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred cchhhcccchhhhhhhhcccccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 4 33 333332221 247778887764 344665 777888888888776544 7777777788
Q ss_pred CccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccC-Cc
Q 038265 703 SLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMAL-PR 781 (883)
Q Consensus 703 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~l-p~ 781 (883)
+|+.|+|++|. ++.+| .+ ..+++|+.|+|++|...... |.
T Consensus 487 ~L~~L~Ls~N~------------------------------------l~~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 487 CLEVLQASDNA------------------------------------LENVD-GV--ANLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp TCCEEECCSSC------------------------------------CCCCG-GG--TTCSSCCEEECCSSCCCSSSTTG
T ss_pred CCCEEECCCCC------------------------------------CCCCc-cc--CCCCCCcEEECCCCCCCCCCCcH
Confidence 88888777652 23344 33 56788888888888654444 78
Q ss_pred cCCCCccccccccccccccccCCCCC----CCCCCcCeeec
Q 038265 782 SLKDLEALENLLITSCPKLSSLPEGM----HHLTTLKTLAI 818 (883)
Q Consensus 782 ~~~~l~~L~~L~L~~c~~l~~lp~~l----~~l~~L~~L~l 818 (883)
.+..+++|+.|+|++|+..+. |... ..+|+|+.|++
T Consensus 528 ~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred HHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence 888888888888888875443 3333 23677877753
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=8.4e-14 Score=158.81 Aligned_cols=185 Identities=19% Similarity=0.235 Sum_probs=135.6
Q ss_pred CCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEee
Q 038265 583 RQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMIS 662 (883)
Q Consensus 583 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 662 (883)
.+|++|++++|. +..+|..+. ++|++|+|++|.. ..+| ..+++|++|++++|.+..+|. +.. +|+.|+++
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNLP--PQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCCC--TTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCC-CCccCHhHc--CCCCEEECcCCCC-cccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 389999999987 556888663 8899999998754 4788 557999999999999998877 554 99999999
Q ss_pred cCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceE
Q 038265 663 DCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTL 742 (883)
Q Consensus 663 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 742 (883)
+|.. +.+|. .+++|+.|++++|... .+|. .+++|+.|+|++|..-.+.. ...+|+.|
T Consensus 129 ~N~l-~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~---------------l~~~L~~L 185 (571)
T 3cvr_A 129 NNQL-TMLPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE---------------LPESLEAL 185 (571)
T ss_dssp SSCC-SCCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC---------------CCTTCCEE
T ss_pred CCcC-CCCCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch---------------hhCCCCEE
Confidence 9764 44666 6899999999987754 4776 57899999999885332110 11578888
Q ss_pred EeccCCCCccchhhhhcCCCCCc-------cEEeecCCCCCccCCccCCCCccccccccccccccccCCCCC
Q 038265 743 CVAELTQLLELPQWLLQGSSKTL-------QMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGM 807 (883)
Q Consensus 743 ~l~~~~~l~~l~~~~~~~~~~~L-------~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l 807 (883)
++++| .++.+|. + .. +| +.|+|++|. ++.+|..+..+++|+.|+|++|+..+.+|..+
T Consensus 186 ~Ls~N-~L~~lp~-~--~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 186 DVSTN-LLESLPA-V--PV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp ECCSS-CCSSCCC-C--C----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred ECcCC-CCCchhh-H--HH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 88776 5666766 3 11 55 788888774 45677777777888888888877766665444
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=1e-13 Score=145.77 Aligned_cols=169 Identities=20% Similarity=0.263 Sum_probs=137.9
Q ss_pred CCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCccc
Q 038265 531 DLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQ 610 (883)
Q Consensus 531 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 610 (883)
.+++++.|.+..+..... ..+..+++|++|++++|.+..++. +..+++|++|++++|. +..+|. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCC
T ss_pred hcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCC
Confidence 466788888864433222 136789999999999999998887 8999999999999987 566665 89999999
Q ss_pred EeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccC
Q 038265 611 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPR 690 (883)
Q Consensus 611 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 690 (883)
+|++++|... .+ ..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.. ..++. +..+++|+.|++++|..
T Consensus 116 ~L~L~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 116 SLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCC-CC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccCEEECCCCcC
Confidence 9999997544 44 4788999999999999999877 5788999999999999864 44444 88999999999999864
Q ss_pred CCCCcccCCCCCCccEEEeccCCC
Q 038265 691 LISLPPAMKYLSSLETLILLKCES 714 (883)
Q Consensus 691 ~~~l~~~l~~l~~L~~L~L~~~~~ 714 (883)
..++. +..+++|+.|++++|+.
T Consensus 191 -~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 191 -SDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -CBCGG-GTTCTTCSEEEEEEEEE
T ss_pred -CCChh-hccCCCCCEEECcCCcc
Confidence 45554 88999999999998753
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=138.41 Aligned_cols=150 Identities=18% Similarity=0.120 Sum_probs=125.3
Q ss_pred ccEEEecCccccccccccCCCCCceEecccCCccccccC-ccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCC
Q 038265 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 640 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 640 (883)
-+.++++++.+..+|..+. ..+++|++++|.+....| ..+.++++|++|+|++|...+..|..+..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3589999999999998764 357899999987444334 3478999999999999876665566899999999999999
Q ss_pred cccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 641 KQKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 641 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
|.+..++. .+..+++|++|++++|......|..+..+++|+.|+|++|......|..+..+++|+.|++++|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99986654 58899999999999987766667889999999999999988777668889999999999999875
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=2.1e-13 Score=135.97 Aligned_cols=180 Identities=16% Similarity=0.093 Sum_probs=132.5
Q ss_pred eEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccccccc-ccCCCCCCCeEEeecC
Q 038265 586 RHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLES-GIGCLSSLRFLMISDC 664 (883)
Q Consensus 586 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 664 (883)
+.++.+++. +..+|..+ .++|++|++++|...+..+..+..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCC-ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 466777654 66777644 4689999999976654444557889999999999998886654 4678899999999987
Q ss_pred CCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEe
Q 038265 665 GNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCV 744 (883)
Q Consensus 665 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 744 (883)
......+..+..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l------------------------------ 136 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL------------------------------ 136 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------------------------------
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc------------------------------
Confidence 65443334568899999999988765544445577888888888887632
Q ss_pred ccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCC
Q 038265 745 AELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTT 812 (883)
Q Consensus 745 ~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~ 812 (883)
..++...+ ..+++|++|++++|+.. ..+++|+.|+++.|...+.+|..++.++.
T Consensus 137 ------~~~~~~~~-~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 137 ------KSVPDGVF-DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------SCCCTTTT-TTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------ceeCHHHh-ccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 22222211 45788999999998533 45678999999999988899988776654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=8.8e-14 Score=137.22 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=80.5
Q ss_pred cCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEE
Q 038265 628 RYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETL 707 (883)
Q Consensus 628 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L 707 (883)
..+++|+.|++++|.+..+| .+..+++|++|++++| .+..+ ..+..+++|+.|++++|......|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 33444455555554444443 4455555555555555 22222 245555666666666555444445555566666666
Q ss_pred EeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCCccCCCCc
Q 038265 708 ILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALPRSLKDLE 787 (883)
Q Consensus 708 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~ 787 (883)
++++|... ...+..+ ..+++|++|++++|..++.+| .+..++
T Consensus 118 ~Ls~n~i~-----------------------------------~~~~~~l--~~l~~L~~L~L~~n~~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 118 DISHSAHD-----------------------------------DSILTKI--NTLPKVNSIDLSYNGAITDIM-PLKTLP 159 (197)
T ss_dssp ECCSSBCB-----------------------------------GGGHHHH--TTCSSCCEEECCSCTBCCCCG-GGGGCS
T ss_pred EecCCccC-----------------------------------cHhHHHH--hhCCCCCEEEccCCCCccccH-hhcCCC
Confidence 66554211 1122233 345666666666665455554 456666
Q ss_pred cccccccccccccccCCCCCCCCCCcCeeeccCCc
Q 038265 788 ALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 788 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
+|+.|++++|.. ..++ .+..+++|+.|++++|+
T Consensus 160 ~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 160 ELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcc
Confidence 677777766653 3344 45666777777776664
No 116
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.49 E-value=2e-12 Score=140.30 Aligned_cols=286 Identities=12% Similarity=0.082 Sum_probs=167.6
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------------CCcHHHHHHHH
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------------DFGKRQIMTKI 227 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------------~~~~~~~~~~i 227 (883)
.+..|+||+++++++.+++.. . +++.|+|++|+|||||++++.+... ..+...++..+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHH
Confidence 456799999999999998854 1 5899999999999999999987641 01233444444
Q ss_pred HHHhhC----------------CCC--CCCChHHHHHHHHHHcCC-CceEEEEeCCCCCCh-------hhHHHHHHhcCC
Q 038265 228 INSVIG----------------GNH--GNLDPDRMQKVLRDSLNG-KRYLLVMDDVWNEDP-------RAWGELKSLLLG 281 (883)
Q Consensus 228 ~~~~~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~~~-------~~~~~l~~~l~~ 281 (883)
...+.. ... ...+..++.+.+.+.... ++++|||||++..+. ..+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 443321 000 013445555556555542 489999999976432 122333322222
Q ss_pred CCCCCEEEEeecChHHHHHH----c---cc--CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCC
Q 038265 282 GAEGSKILVTTRSNKVALIM----G---TM--RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRG 352 (883)
Q Consensus 282 ~~~gs~iivTtr~~~v~~~~----~---~~--~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g 352 (883)
.++.++|+|++........ . .. .....+.+.+|+.+|+.+++.......+.... .+.+.+|++.|+|
T Consensus 162 -~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG 237 (350)
T 2qen_A 162 -LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDG 237 (350)
T ss_dssp -CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTT
T ss_pred -cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCC
Confidence 2477899999876542211 1 01 11237899999999999999875422222211 3466889999999
Q ss_pred CchHHHHHHhhhcCCCCHHHHH-HHHccccccccCCCCCcchHHHHhhcCC---ChhhhHHhhhhccCCCCcccchhHHH
Q 038265 353 IPLAVRTVGSLLYGSTDEHDWE-HVRDNDIWKLRQAPDDILPALRLSYDQL---PPHLKQCFAYCSIFPKDYKFASVHLV 428 (883)
Q Consensus 353 lPLai~~~~~~L~~~~~~~~w~-~~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~s~fp~~~~~~~~~Li 428 (883)
+|+++..++..+....+...+. .+.+ .+...+.-.+..+ ++..+..+..+|. + .++...+.
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~ 302 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIR 302 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHH
Confidence 9999999987653211221111 1111 0111111112222 7788999998887 2 23434443
Q ss_pred HHHHHhcCCcCCCCCchHHHHHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHHHH
Q 038265 429 QFWMAQGLLQSPNENEELEKIGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHDLA 488 (883)
Q Consensus 429 ~~w~a~gli~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~dla 488 (883)
...... .- . . .......+++.|.+.+++.... ..+. ..|++++++.
T Consensus 303 ~~~~~~-~~-~----~-~~~~~~~~l~~L~~~gli~~~~-----~~y~--~~~p~~~~~~ 348 (350)
T 2qen_A 303 DYLAVK-GT-K----I-PEPRLYALLENLKKMNWIVEED-----NTYK--IADPVVATVL 348 (350)
T ss_dssp HHHHHT-TC-C----C-CHHHHHHHHHHHHHTTSEEEET-----TEEE--ESSHHHHHHH
T ss_pred HHHHHH-hC-C----C-CHHHHHHHHHHHHhCCCEEecC-----CEEE--EecHHHHHHH
Confidence 332111 10 0 0 1234567899999999997652 1222 4577887754
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=2.1e-13 Score=137.95 Aligned_cols=148 Identities=23% Similarity=0.192 Sum_probs=121.6
Q ss_pred ccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCC-ccccCCcccCEEEeCC
Q 038265 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELP-KDIRYLVSLRMFVVTT 640 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~ 640 (883)
.+.++.+++.+..+|..+. ++|++|++++|.+.+..|..+.++++|++|+|++|.. ..+| ..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 5678889999999998764 7899999999986666678888999999999998765 5555 4568899999999999
Q ss_pred ccccccccc-cCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 641 KQKSLLESG-IGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 641 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
|.+..++.. +..+++|+.|++++|. +..+|..+..+++|+.|+|++|......+..+..+++|+.|++++|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999866644 6889999999999875 45788888999999999999886554444568889999999998875
No 118
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=2.5e-12 Score=140.04 Aligned_cols=284 Identities=12% Similarity=0.130 Sum_probs=162.5
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---------CC------CcHHHHHHH
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---------KD------FGKRQIMTK 226 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---------~~------~~~~~~~~~ 226 (883)
.+..|+||+++++++.+ +.. +++.|+|++|+|||||++++.+.. .. .+...++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHH
Confidence 34679999999999998 621 599999999999999999997653 11 123344444
Q ss_pred HHHHhh-------------CC-------CC---------CCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh---hhHHH
Q 038265 227 IINSVI-------------GG-------NH---------GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP---RAWGE 274 (883)
Q Consensus 227 i~~~~~-------------~~-------~~---------~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~---~~~~~ 274 (883)
+...+. .. .. .......+...+.+... ++++|||||++..+. .++..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 333221 00 00 11234445555544333 499999999966321 12322
Q ss_pred HHHhcCCCCCCCEEEEeecChHHHHHH----c---ccCC--CCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHH
Q 038265 275 LKSLLLGGAEGSKILVTTRSNKVALIM----G---TMRG--TTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEK 345 (883)
Q Consensus 275 l~~~l~~~~~gs~iivTtr~~~v~~~~----~---~~~~--~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~ 345 (883)
+...+....++.++|+|++........ . ...+ ...+.+.+|+.+|+.+++.......+.... .. .+
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~----~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DY----EV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CH----HH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cH----HH
Confidence 222222222467899999986543221 1 1111 247899999999999999875422122111 11 78
Q ss_pred HHHHhCCCchHHHHHHhhhcCCCCHHHHHH-HHccccccccCCCCCcchHHH-Hhhc--CCChhhhHHhhhhccCCCCcc
Q 038265 346 IMEKCRGIPLAVRTVGSLLYGSTDEHDWEH-VRDNDIWKLRQAPDDILPALR-LSYD--QLPPHLKQCFAYCSIFPKDYK 421 (883)
Q Consensus 346 i~~~c~glPLai~~~~~~L~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~~s~fp~~~~ 421 (883)
|++.|+|+|+++..++..+....+...|.. +.+.. ...+...+. +.++ .+++..+..+..+|+ +.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~- 303 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLSK---CG- 303 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB-
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC-
Confidence 999999999999999887643222222321 11000 000111111 1111 678889999999998 21
Q ss_pred cchhHHHHHHH-HhcCCcCCCCCchHHHHHHHHHHHHHhCCCceecCCCCCCceeeeeehhHHHHHH
Q 038265 422 FASVHLVQFWM-AQGLLQSPNENEELEKIGMRYFKELCSRSFFQDLGDLLPGLEVFNCQIHDLMHDL 487 (883)
Q Consensus 422 ~~~~~Li~~w~-a~gli~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mHdli~dl 487 (883)
+...+....- ..|. .........+++.|.+.+++.... . .|. ..|++++++
T Consensus 304 -~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~-----~-~y~-f~~~~~~~~ 355 (357)
T 2fna_A 304 -KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG-----E-KYC-PSEPLISLA 355 (357)
T ss_dssp -CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS-----S-CEE-ESSHHHHHH
T ss_pred -CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC-----C-EEE-ecCHHHHHh
Confidence 3333322110 1120 001234567899999999997652 1 231 467888765
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=7.4e-13 Score=136.88 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=113.0
Q ss_pred hccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
+..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|. +.++++|++|++++|.. ..+|.... ++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRL-KNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCC-SCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCcc-CCcCcccc--CcccE
Confidence 556788888888888888887 67888888899988886 556665 88888889999888644 44554333 88888
Q ss_pred EEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 636 FVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 636 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
|++++|.+..++ .+..+++|+.|++++|.. +.++ .++.+++|+.|++++|..... ..+..+++|+.|++++|.
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 888888888765 578888888888888654 4444 678888888888888765443 557788888888888765
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=8.6e-13 Score=143.57 Aligned_cols=150 Identities=16% Similarity=0.128 Sum_probs=114.2
Q ss_pred cEEEecCccccccccccCCCCCceEecccCCccccccCcccc-CCCcccEeecCCCCCCccCCccccCCcccCEEEeCCc
Q 038265 563 RVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSIC-ELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 641 (883)
Q Consensus 563 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 641 (883)
++++++++.+..+|..+. ..+++|+|++|.+....+..+. ++++|++|+|++|...+..|..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888899988887764 3688999998874444444455 8899999999987666555567888999999999999
Q ss_pred ccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCccc-C---CCCCCccEEEeccCCCC
Q 038265 642 QKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPA-M---KYLSSLETLILLKCESL 715 (883)
Q Consensus 642 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~-l---~~l~~L~~L~L~~~~~l 715 (883)
.+..++. .+..+++|+.|+|++|......+..+..+++|+.|+|++|.. ..+|.. + ..+++|+.|+|++|..-
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 8886554 578889999999998876655567788899999999988764 445544 3 56888999999887543
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=2.1e-12 Score=129.64 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCCccEEeecCCCCCccCCccCCCCccccccccccccccccCCCCCCCCCCcCeeeccCCc
Q 038265 762 SKTLQMLTIGDCPNFMALPRSLKDLEALENLLITSCPKLSSLPEGMHHLTTLKTLAIEECP 822 (883)
Q Consensus 762 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 822 (883)
+++|++|+|++|......|..+..+++|+.|+|++|......+..+..+++|+.|++++||
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 4455555555554333334445555555555555555333333345555556666665555
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=1.5e-13 Score=142.19 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=98.5
Q ss_pred cCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEE
Q 038265 558 KSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 637 (883)
Q Consensus 558 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 637 (883)
.+..+..++++++.+..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence 3455666777788887776 56778888888888875 56677 57788888888888764 444554 77888888888
Q ss_pred eCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 638 VTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 638 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
+++|.+..++... . ++|+.|++++|.. +.++ .+..+++|+.|++++|.. ..++ .+..+++|+.|++++|.
T Consensus 92 L~~N~l~~l~~~~-~-~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 92 VNRNRLKNLNGIP-S-ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CCSSCCSCCTTCC-C-SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSC
T ss_pred CCCCccCCcCccc-c-CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCc
Confidence 8888877665432 2 7777777777643 3333 466777777777776653 3333 45566666666666653
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=1.4e-12 Score=131.75 Aligned_cols=132 Identities=23% Similarity=0.269 Sum_probs=107.0
Q ss_pred CcccEEEecCcccccc-ccccCCCCCceEecccCCccccccC-ccccCCCcccEeecCCCCCCccCCccccCCcccCEEE
Q 038265 560 KSLRVLVLMNSAIEVL-PRKMGNLRQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 637 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 637 (883)
++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+| ..+..+++|++|+|++|...+..+..+..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 7899999999999877 5668889999999999887 45555 4468899999999998765544445578899999999
Q ss_pred eCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCC
Q 038265 638 VTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLI 692 (883)
Q Consensus 638 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (883)
+++|.+..+|..+..+++|+.|++++|......+..+..+++|+.|++++|+...
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999999888888999999999999875543333567889999999999887543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=6.1e-13 Score=127.47 Aligned_cols=129 Identities=18% Similarity=0.157 Sum_probs=99.2
Q ss_pred cCCcccEEEecCcccc--ccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 558 KSKSLRVLVLMNSAIE--VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 558 ~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
..++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|...+.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4578999999999887 888888888899999999887 4445 56888889999999888766667777777888888
Q ss_pred EEeCCccccccc--cccCCCCCCCeEEeecCCCcccccc----ccccCcccceeeecccc
Q 038265 636 FVVTTKQKSLLE--SGIGCLSSLRFLMISDCGNLEYLFE----DIDQLSVLRSLVINSCP 689 (883)
Q Consensus 636 L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 689 (883)
|++++|.+..++ ..+..+++|+.|++++|... .++. .+..+++|+.|++++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCC
Confidence 888888887654 56777788888888776543 3343 56677777777777765
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.4e-12 Score=141.88 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=103.4
Q ss_pred ceEecccCCccccccCccccCCCcccEeecCCCCCCccCCcccc-CCcccCEEEeCCccccccc-cccCCCCCCCeEEee
Q 038265 585 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIR-YLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMIS 662 (883)
Q Consensus 585 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 662 (883)
-+.++++++. +..+|..+. +.|+.|+|++|...+..+..+. .+++|+.|++++|.+..++ ..+..+++|+.|+++
T Consensus 20 ~~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3678998775 778887654 5699999999766555555566 8999999999999998665 468999999999999
Q ss_pred cCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCCCC
Q 038265 663 DCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESL 715 (883)
Q Consensus 663 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l 715 (883)
+|......+..+..+++|+.|+|++|......|..+..+++|+.|+|++|..-
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 98754444456889999999999998876666788999999999999987543
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=2e-12 Score=129.74 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=107.8
Q ss_pred CcccEEEecCcccccccc--ccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEE
Q 038265 560 KSLRVLVLMNSAIEVLPR--KMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 637 (883)
Q Consensus 560 ~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 637 (883)
..+++|++++|.+..++. .+..+++|++|++++|.+....|..+.++++|++|+|++|...+..|..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 457899999999988743 378899999999998875544455788999999999998877666666788999999999
Q ss_pred eCCcccccc-ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCC
Q 038265 638 VTTKQKSLL-ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRL 691 (883)
Q Consensus 638 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 691 (883)
+++|.+..+ |..+..+++|+.|++++|......|..+..+++|+.|++++|+..
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999998855 567888999999999997766555788889999999999988754
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=6.8e-13 Score=124.33 Aligned_cols=126 Identities=19% Similarity=0.161 Sum_probs=96.1
Q ss_pred cCCcccEEEecCcccc--ccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCE
Q 038265 558 KSKSLRVLVLMNSAIE--VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 635 (883)
Q Consensus 558 ~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 635 (883)
..++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|...+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3477889999999887 788888888999999999886 4444 56888889999999887766667777777888888
Q ss_pred EEeCCccccccc--cccCCCCCCCeEEeecCCCcccccc----ccccCcccceeeec
Q 038265 636 FVVTTKQKSLLE--SGIGCLSSLRFLMISDCGNLEYLFE----DIDQLSVLRSLVIN 686 (883)
Q Consensus 636 L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~ 686 (883)
|++++|.+...+ ..+..+++|++|++++|.. ..++. .+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 888888887644 6677778888888877643 33333 56677777777664
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=5.2e-12 Score=123.75 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=98.2
Q ss_pred cEEEecCccccccccccCCCCCceEecccCCccccccCc--cccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCC
Q 038265 563 RVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPN--SICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 640 (883)
Q Consensus 563 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 640 (883)
++++++++.+..+|..+.. +|++|++++|. +..+|. .+..+++|++|+|++|...+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 7889999999999887654 89999999886 555554 378899999999998877776688888888888888888
Q ss_pred cccccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCC
Q 038265 641 KQKSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRL 691 (883)
Q Consensus 641 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 691 (883)
|.+..++. .+..+++|++|++++|......|..+..+++|+.|++++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88885543 4777888888888887665555667777777888877777644
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=5.9e-13 Score=157.83 Aligned_cols=144 Identities=22% Similarity=0.240 Sum_probs=115.2
Q ss_pred hhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCC
Q 038265 551 FVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYL 630 (883)
Q Consensus 551 ~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 630 (883)
..+..+..++.|+.|+|++|.+..+|..+.++++|++|+|++|. +..+|..++++++|++|+|++|... .+|..++.|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 45667889999999999999999999999999999999999997 5599999999999999999997655 889999999
Q ss_pred cccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcc-cceeeeccccCCCCCcc
Q 038265 631 VSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSV-LRSLVINSCPRLISLPP 696 (883)
Q Consensus 631 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~l~~ 696 (883)
++|++|+|++|.+..+|..++.+++|+.|+|++|.....+|..+..+.. +..|+|++|...+.+|.
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 9999999999999999989999999999999998876666655543321 12345666555554444
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=3.6e-13 Score=159.68 Aligned_cols=124 Identities=20% Similarity=0.229 Sum_probs=71.1
Q ss_pred ccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccC
Q 038265 572 IEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIG 651 (883)
Q Consensus 572 ~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~ 651 (883)
+...|..+..+.+|+.|+|++|. +..+|..+.++++|++|+|++|... .+|..++.|++|++|+|++|.+..+|..++
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp ---------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred eecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 33345556666666666666665 4466666666666666666665433 666666666666666666666666666666
Q ss_pred CCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccC
Q 038265 652 CLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAM 698 (883)
Q Consensus 652 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l 698 (883)
.+++|+.|+|++|. ++.+|..++.+++|+.|+|++|...+.+|..+
T Consensus 291 ~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66666666666653 34556556666666666666665554444433
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=3.8e-12 Score=121.90 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=108.6
Q ss_pred CCCCceEecccCCccc-cccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccc-cccccCCCCCCCe
Q 038265 581 NLRQLRHLDLSGNRKI-KKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL-LESGIGCLSSLRF 658 (883)
Q Consensus 581 ~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~ 658 (883)
..++|++|++++|.+. +.+|..+..+++|++|++++|... .+ ..+..+++|++|++++|.+.. +|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4578999999999754 488988899999999999998644 44 688899999999999999987 6666677999999
Q ss_pred EEeecCCCccccc--cccccCcccceeeeccccCCCCCc---ccCCCCCCccEEEeccCCCCc
Q 038265 659 LMISDCGNLEYLF--EDIDQLSVLRSLVINSCPRLISLP---PAMKYLSSLETLILLKCESLD 716 (883)
Q Consensus 659 L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~L~L~~~~~l~ 716 (883)
|++++|.. ..++ ..+..+++|+.|++++|......+ ..+..+++|+.|++++|....
T Consensus 100 L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999854 4544 678899999999999987544333 378899999999999986543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.7e-11 Score=119.97 Aligned_cols=124 Identities=20% Similarity=0.301 Sum_probs=84.0
Q ss_pred cEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcc
Q 038265 563 RVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 642 (883)
Q Consensus 563 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 642 (883)
++++++++.+..+|..+. .+|++|++++|. +..+|..+.++++|++|+|++|...+..|..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578888888888887654 578888888876 56777778888888888888876655555567777777777777777
Q ss_pred cccccc-ccCCCCCCCeEEeecCCCccccccccccCcccceeeecccc
Q 038265 643 KSLLES-GIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCP 689 (883)
Q Consensus 643 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 689 (883)
+..++. .+..+++|+.|++++|......+..+..+++|+.|++++|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 765443 46666666666666654332222235555666666665554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=3.5e-12 Score=119.42 Aligned_cols=127 Identities=21% Similarity=0.164 Sum_probs=103.4
Q ss_pred CCCCceEecccCCccc-cccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccc-cccccCCCCCCCe
Q 038265 581 NLRQLRHLDLSGNRKI-KKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSL-LESGIGCLSSLRF 658 (883)
Q Consensus 581 ~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~ 658 (883)
..++|+.|++++|... +.+|..++.+++|++|++++|...+ + ..+..+++|++|++++|.+.. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3468999999999754 4889888999999999999975544 4 678899999999999999987 7777777999999
Q ss_pred EEeecCCCcccc--ccccccCcccceeeeccccCCCCCc---ccCCCCCCccEEEec
Q 038265 659 LMISDCGNLEYL--FEDIDQLSVLRSLVINSCPRLISLP---PAMKYLSSLETLILL 710 (883)
Q Consensus 659 L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~L~L~ 710 (883)
|++++|.. +.+ +..++.+++|+.|++++|......+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCC-CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcC-CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999764 443 3778999999999999986544333 367888999999875
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=8.2e-12 Score=120.52 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=81.1
Q ss_pred hccCCcccEEEecCccccccccccCCCC-CceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccc-cCCccc
Q 038265 556 ISKSKSLRVLVLMNSAIEVLPRKMGNLR-QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDI-RYLVSL 633 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~-~~l~~L 633 (883)
+..+.+|+.|++++|.+..+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|... .+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 4456777777777777777754 33333 77777777775 4444 45677777777777776443 444333 667777
Q ss_pred CEEEeCCcccccccc--ccCCCCCCCeEEeecCCCccccccc----cccCcccceeeecccc
Q 038265 634 RMFVVTTKQKSLLES--GIGCLSSLRFLMISDCGNLEYLFED----IDQLSVLRSLVINSCP 689 (883)
Q Consensus 634 ~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~ 689 (883)
++|++++|.+..+|. .+..+++|+.|++++|.. ..+|.. +..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777777777765554 566666677777766543 234432 5556666666665554
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=2e-11 Score=125.13 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=121.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC--------CcHHHHHHHHHHHhhCC-
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD--------FGKRQIMTKIINSVIGG- 234 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--------~~~~~~~~~i~~~~~~~- 234 (883)
.+++||+..++.+..++... ...+.+.|+|++|+||||+|+.+++.... .........+.......
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 46999999999999998653 22348899999999999999999765410 00000011111100000
Q ss_pred ---CCCC-CChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHH-HHHccc
Q 038265 235 ---NHGN-LDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTM 304 (883)
Q Consensus 235 ---~~~~-~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~ 304 (883)
.... ...+.. ..+.+.+ .+++.+||+||++..+...+..+...+.....+..+|+||+..... .....
T Consensus 98 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~- 175 (250)
T 1njg_A 98 IEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS- 175 (250)
T ss_dssp EEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred EEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH-
Confidence 0000 111222 2233332 3467999999998776667777777776656678899998765321 11111
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
....+.+.+++.++..+++...+...+.... .+....|++.|+|.|..+..+...+
T Consensus 176 -r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 176 -RCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp -TSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1257999999999999999988755433222 3456789999999999988776544
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=2.3e-12 Score=147.88 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=113.2
Q ss_pred CCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcc--------------ccccccccCCCCCceEec-ccCCc
Q 038265 530 PDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSA--------------IEVLPRKMGNLRQLRHLD-LSGNR 594 (883)
Q Consensus 530 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------~~~lp~~~~~l~~L~~L~-l~~~~ 594 (883)
..+++|+.|.+.. .....+|..+..+++|+.|+++++. ...+|..++.+++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~----n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSV----EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCH----HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCCh----hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 3455666666642 2223456667778888888876653 224455666777777776 44332
Q ss_pred cccccCc------cccC--CCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCC
Q 038265 595 KIKKLPN------SICE--LQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGN 666 (883)
Q Consensus 595 ~~~~lp~------~~~~--l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 666 (883)
...++. .+.. ...|++|+|++|. +..+|. ++.+++|+.|++++|.+..+|..++.+++|+.|++++|..
T Consensus 422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred -cchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC
Confidence 222221 1111 1247778887754 444675 7778888888888887777777777888888888877654
Q ss_pred ccccccccccCcccceeeeccccCCCCC-cccCCCCCCccEEEeccCCC
Q 038265 667 LEYLFEDIDQLSVLRSLVINSCPRLISL-PPAMKYLSSLETLILLKCES 714 (883)
Q Consensus 667 ~~~~~~~l~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~ 714 (883)
+.+| .++.+++|+.|+|++|...+.. |..+..+++|+.|+|++|..
T Consensus 499 -~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 499 -ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred -CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 3465 6777888888888777655444 77777788888888877754
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=5.6e-10 Score=122.62 Aligned_cols=282 Identities=12% Similarity=0.016 Sum_probs=167.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---------------------CCC-cH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ---------------------KDF-GK 220 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---------------------~~~-~~ 220 (883)
+.+++||+++++++.+++..... ....+.+.|+|++|+||||+|+.+++.. ... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 47799999999999988754211 1335689999999999999999998742 111 45
Q ss_pred HHHHHHHHHHhhCCCC--CCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHH-HHhcCCCCCCCEEEEeecChHH
Q 038265 221 RQIMTKIINSVIGGNH--GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGEL-KSLLLGGAEGSKILVTTRSNKV 297 (883)
Q Consensus 221 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~v 297 (883)
..++..++.++.+... ...+.......+.+.+..++.+|||||++......+... ...+.....+..||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 5666777777643322 223345667777788877767999999965322111122 2222222267889999987531
Q ss_pred ----HHHHcccCCCCceecCCCChhcHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHhC---CCch-HHHHHHhhh--c
Q 038265 298 ----ALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKE--GKEKHPNLVKIGEKIMEKCR---GIPL-AVRTVGSLL--Y 365 (883)
Q Consensus 298 ----~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~--~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~L--~ 365 (883)
...... .....+.+++++.++..++|...+... .....+ +....+++.++ |.|. |+..+-... +
T Consensus 177 ~~~l~~~l~s-r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 177 RDYMEPRVLS-SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTSCHHHHH-TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HhhhCHHHHh-cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 111111 111479999999999999999886321 111222 34567777787 8886 443333222 1
Q ss_pred ---CCCCHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhhhHHhhhhccCCCCcccchhHHHHHHHHhcCCcCCCC
Q 038265 366 ---GSTDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYKFASVHLVQFWMAQGLLQSPNE 442 (883)
Q Consensus 366 ---~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~~~~~~Li~~w~a~gli~~~~~ 442 (883)
..-+.+.+..+..... ...+..++..|+++.+..+..++....+..+. +... -+++.+-.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~--~~~~~~g~---- 315 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYT--DLCNKFKQ---- 315 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHH--HHHHHTTC----
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHH--HHHHHcCC----
Confidence 1224555555443211 13466678899998888887777611101111 1111 12222100
Q ss_pred CchHHHHHHHHHHHHHhCCCceecC
Q 038265 443 NEELEKIGMRYFKELCSRSFFQDLG 467 (883)
Q Consensus 443 ~~~~~~~~~~~l~~L~~~~ll~~~~ 467 (883)
..........++..|...+++....
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1112345678899999999997643
No 138
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=7.7e-10 Score=121.77 Aligned_cols=288 Identities=14% Similarity=0.063 Sum_probs=170.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------------CCCcHHHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------------KDFGKRQIMTKII 228 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------------~~~~~~~~~~~i~ 228 (883)
++.++||+++++++.+++.....+.....+.+.|+|++|+||||||+.+++.. ...+...++..++
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 46799999999999998865211111233489999999999999999987643 1223556777777
Q ss_pred HHhhCCCC-CCCChHHHHHHHHHHcC--CCceEEEEeCCCCCChhhHHHHHHhcCCCC----CCCEEEEeecChHHHHHH
Q 038265 229 NSVIGGNH-GNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNEDPRAWGELKSLLLGGA----EGSKILVTTRSNKVALIM 301 (883)
Q Consensus 229 ~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~~ 301 (883)
..+..... ...+.......+.+.+. +++.+||||+++..+......+...+.... .+..||+||+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 76633211 22345555556555553 568899999997766555556655554321 366788888766433211
Q ss_pred cc----cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHh---------CCCchHHHHHHhhhc---
Q 038265 302 GT----MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKC---------RGIPLAVRTVGSLLY--- 365 (883)
Q Consensus 302 ~~----~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~~~~L~--- 365 (883)
.. .-....+.+.+++.++..+++...+...... ..-..+....+++.+ +|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 10 0011369999999999999998876321111 111235567888888 788755444333221
Q ss_pred ---CC--CCHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhhhHHhhhhccCC---CCcccchhHHHHHHHH----
Q 038265 366 ---GS--TDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFP---KDYKFASVHLVQFWMA---- 433 (883)
Q Consensus 366 ---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp---~~~~~~~~~Li~~w~a---- 433 (883)
+. -+.+....+..... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 11 12222222221110 11223346778888888887777654 2224555555443322
Q ss_pred hcCCcCCCCCchHHHHHHHHHHHHHhCCCceecC
Q 038265 434 QGLLQSPNENEELEKIGMRYFKELCSRSFFQDLG 467 (883)
Q Consensus 434 ~gli~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 467 (883)
.|.. .. .......++.+|...+++....
T Consensus 325 ~~~~-~~-----~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 325 YGER-PR-----VHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp TTCC-CC-----CHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCCC-CC-----CHHHHHHHHHHHHhCCCeEEee
Confidence 1211 11 1244678899999999998754
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=5.3e-11 Score=116.51 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=105.7
Q ss_pred eEecccCCccccccCccccCCCcccEeecCCCCCCccCCc-cccCCcccCEEEeCCcccccc-ccccCCCCCCCeEEeec
Q 038265 586 RHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPK-DIRYLVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMISD 663 (883)
Q Consensus 586 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~ 663 (883)
++++++++. ++.+|..+.. +|++|++++|...+..+. .+..+++|++|++++|.+..+ |..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999886 6888986653 999999999755444333 389999999999999999865 67899999999999999
Q ss_pred CCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 664 CGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 664 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
|......+..+..+++|+.|+|++|...+..|..+..+++|++|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 87666556668999999999999998877778889999999999999875
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.21 E-value=8.8e-10 Score=121.21 Aligned_cols=284 Identities=14% Similarity=0.049 Sum_probs=164.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-------------------CCCcHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-------------------KDFGKRQI 223 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-------------------~~~~~~~~ 223 (883)
++.++||+++++++..++..... ....+.+.|+|++|+||||+|+.+++.. ...+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 47799999999999998854311 1345689999999999999999997643 22245567
Q ss_pred HHHHHHHhhCCC-CCCCChHHHHHHHHHHcC--CCceEEEEeCCCCCChh--hHHHHHHh---cCCC--CCCCEEEEeec
Q 038265 224 MTKIINSVIGGN-HGNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNEDPR--AWGELKSL---LLGG--AEGSKILVTTR 293 (883)
Q Consensus 224 ~~~i~~~~~~~~-~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~~--~~~~l~~~---l~~~--~~gs~iivTtr 293 (883)
+..++..+.... ....+.......+.+.+. +++.+||||+++..... ..+.+... .... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 777777764321 122345566666666663 46889999999653221 11222222 2211 34567888887
Q ss_pred ChHHH----HHHcccCCCCceecCCCChhcHHHHHHHHHhc--CCCCCCcchHHHHHHHHHHhC---CCch-HHHHHHhh
Q 038265 294 SNKVA----LIMGTMRGTTGYNLQELPYKDCLSLFMKCAFK--EGKEKHPNLVKIGEKIMEKCR---GIPL-AVRTVGSL 363 (883)
Q Consensus 294 ~~~v~----~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~ 363 (883)
..... ......-....+.+.+++.++..+++...+.. ......+ +....++++++ |.|. ++.++..+
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 65211 11111111136899999999999999987632 1122223 33467777777 9994 33333222
Q ss_pred hc-----C--CCCHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhhhHHhhhhc-cCCCCcccchhHHHHHH--HH
Q 038265 364 LY-----G--STDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCS-IFPKDYKFASVHLVQFW--MA 433 (883)
Q Consensus 364 L~-----~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s-~fp~~~~~~~~~Li~~w--~a 433 (883)
.. + .-+.+.+..+..... ...+.-++..|+++.+..++.++ ++.....+....+.+.. ++
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 21 1 123444444433211 12455678899999888877776 34322344444333322 11
Q ss_pred hcC-CcCCCCCchHHHHHHHHHHHHHhCCCceec
Q 038265 434 QGL-LQSPNENEELEKIGMRYFKELCSRSFFQDL 466 (883)
Q Consensus 434 ~gl-i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 466 (883)
+.. .. .........++..|...+++...
T Consensus 323 ~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLGLE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTTCC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 111 11 11234567889999999999864
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.1e-10 Score=112.78 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=84.6
Q ss_pred ccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCc
Q 038265 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 641 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 641 (883)
.+.++++++.+..+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|...+..+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 5677888888888876543 57888888887644333344677888888888876554333344677777888888777
Q ss_pred ccccccc-ccCCCCCCCeEEeecCCCccccccc-cccCcccceeeeccccCCC
Q 038265 642 QKSLLES-GIGCLSSLRFLMISDCGNLEYLFED-IDQLSVLRSLVINSCPRLI 692 (883)
Q Consensus 642 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~ 692 (883)
.+..++. .+..+++|+.|++++|... .+|.. +..+++|+.|++++|+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 7775544 3566777777777776433 34433 4666777777777665433
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=1.2e-10 Score=124.76 Aligned_cols=236 Identities=17% Similarity=0.160 Sum_probs=113.8
Q ss_pred CCcccEEEecCccccccccccCCCCCceEecccCCccccccC-ccccC--------CCcccEeecCCCCCCccCC-cccc
Q 038265 559 SKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLP-NSICE--------LQSLQTLNLGDCLELEELP-KDIR 628 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~--------l~~L~~L~L~~~~~~~~lp-~~~~ 628 (883)
+++|++|||++|.+......-+.++.++.+.+..+ .+| ..|.+ |++|+.|+|.+ .+..++ ..|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 78899999999988721111112222333333322 122 22334 66666666654 233332 3456
Q ss_pred CCcccCEEEeCCcccccc-ccccCCCCCCCeEEeec-----------------CCCcc---------ccccc----cccC
Q 038265 629 YLVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMISD-----------------CGNLE---------YLFED----IDQL 677 (883)
Q Consensus 629 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~-----------------~~~~~---------~~~~~----l~~l 677 (883)
.|++|+.++++.|.+..+ +..|..+.++..+.+.. |..++ .++.. -...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 666666666666655422 23344444443333221 11111 00000 0122
Q ss_pred cccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhh
Q 038265 678 SVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWL 757 (883)
Q Consensus 678 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 757 (883)
.++..+.+.++-...........+++|+.|+|.+|..-.+... +...+.+|+.+++.++ ++.++...
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~-----------aF~~~~~L~~l~l~~n--i~~I~~~a 268 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF-----------TFAQKKYLLKIKLPHN--LKTIGQRV 268 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT-----------TTTTCTTCCEEECCTT--CCEECTTT
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh-----------hhhCCCCCCEEECCcc--cceehHHH
Confidence 3344444433211111111111256777777766542222111 1223345666666553 55555554
Q ss_pred hcCCCCCcc-EEeecCCCCCccC-CccCCCCccccccccccccccccCC-CCCCCCCCcCeee
Q 038265 758 LQGSSKTLQ-MLTIGDCPNFMAL-PRSLKDLEALENLLITSCPKLSSLP-EGMHHLTTLKTLA 817 (883)
Q Consensus 758 ~~~~~~~L~-~L~l~~~~~l~~l-p~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~ 817 (883)
+ ..+++|+ .+++.+ .++.+ +..|.+|++|+.|++.+|. +..++ ..+.++++|+.|+
T Consensus 269 F-~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 269 F-SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T-TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred h-hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 3 5667787 788776 34444 3567778888888877665 34443 4567777777765
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=3.6e-11 Score=115.97 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=105.9
Q ss_pred ccCCCCCceEecccCCccccccCccccCCC-cccEeecCCCCCCccCCccccCCcccCEEEeCCcccccccccc-CCCCC
Q 038265 578 KMGNLRQLRHLDLSGNRKIKKLPNSICELQ-SLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGI-GCLSS 655 (883)
Q Consensus 578 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~ 655 (883)
.+.++.+|++|++++|. +..+|. +..+. +|++|++++|...+ + ..+..+++|++|++++|.+..+|..+ ..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35678899999999987 556776 55554 99999999976554 4 58899999999999999999777555 88999
Q ss_pred CCeEEeecCCCcccccc--ccccCcccceeeeccccCCCCCccc----CCCCCCccEEEeccCC
Q 038265 656 LRFLMISDCGNLEYLFE--DIDQLSVLRSLVINSCPRLISLPPA----MKYLSSLETLILLKCE 713 (883)
Q Consensus 656 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~l~~~----l~~l~~L~~L~L~~~~ 713 (883)
|+.|++++|.. +.+|. .+..+++|+.|++++|... .+|.. +..+++|+.|++++|.
T Consensus 90 L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999754 56665 7889999999999998754 55653 7889999999998875
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=2.3e-10 Score=111.94 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=103.5
Q ss_pred eEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccc-cccCCCCCCCeEEeecC
Q 038265 586 RHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISDC 664 (883)
Q Consensus 586 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~ 664 (883)
++++++++. +..+|..+. ++|++|++++|. +..+|..+..+++|+.|++++|.+..++ ..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCC-CCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 678998876 778887653 689999999864 5688999999999999999999999665 46899999999999998
Q ss_pred CCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEeccCC
Q 038265 665 GNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 665 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 713 (883)
......+..+..+++|+.|+|++|......+..+..+++|+.|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 7665555679999999999999987654444568889999999999875
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=1.4e-12 Score=128.69 Aligned_cols=108 Identities=26% Similarity=0.361 Sum_probs=48.8
Q ss_pred ccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCC
Q 038265 578 KMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLR 657 (883)
Q Consensus 578 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 657 (883)
.+..+++|++|++++|. +..+| .+.++++|++|++++|.. ..+|..+..+++|+.|++++|.+..+| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 44444455555554443 23344 344444555555544322 234444444445555555555444433 344445555
Q ss_pred eEEeecCCCccccc--cccccCcccceeeeccccC
Q 038265 658 FLMISDCGNLEYLF--EDIDQLSVLRSLVINSCPR 690 (883)
Q Consensus 658 ~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~ 690 (883)
.|++++|.. ..++ ..+..+++|+.|++++|..
T Consensus 119 ~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 119 VLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred EEECCCCcC-CchhHHHHHhcCCCCCEEEecCCcc
Confidence 555554432 2221 2344555555555555443
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=3.8e-12 Score=125.51 Aligned_cols=128 Identities=23% Similarity=0.283 Sum_probs=106.5
Q ss_pred HHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcc
Q 038265 553 TSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVS 632 (883)
Q Consensus 553 ~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 632 (883)
+..+..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|.. ..+| .+..+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI-ASLS-GIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEEC-CCHH-HHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcC-CcCC-ccccCCC
Confidence 346788999999999999999998 88999999999999987 668898888889999999999754 4466 6889999
Q ss_pred cCEEEeCCcccccccc--ccCCCCCCCeEEeecCCCcccccc----------ccccCcccceee
Q 038265 633 LRMFVVTTKQKSLLES--GIGCLSSLRFLMISDCGNLEYLFE----------DIDQLSVLRSLV 684 (883)
Q Consensus 633 L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L~ 684 (883)
|++|++++|.+..++. .+..+++|+.|++++|......|. .+..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999986553 688999999999999865444333 256677777775
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.07 E-value=1.4e-09 Score=109.25 Aligned_cols=183 Identities=12% Similarity=0.086 Sum_probs=116.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhh-CCCCCCCCh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVI-GGNHGNLDP 241 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~ 241 (883)
..+++|+++.++.+.+++... ....+.|+|++|+|||++|+.+++....-... .... -........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWR-------DNFIEMNASDERGI 82 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG-------GGEEEEETTCTTCH
T ss_pred HHHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhccccc-------cceEEeccccccCh
Confidence 356999999999999998653 22348999999999999999987642000000 0000 000111122
Q ss_pred HHHHHHHHHHc------CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHH-HHHcccCCCCceecCC
Q 038265 242 DRMQKVLRDSL------NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGTTGYNLQE 314 (883)
Q Consensus 242 ~~~~~~l~~~l------~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~~~l~~ 314 (883)
+.....+.... .+++.+||+||++.......+.+...+.....+.++|+||+..... ..... ....+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~ 160 (226)
T 2chg_A 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKP 160 (226)
T ss_dssp HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCC
T ss_pred HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH--hCceeecCC
Confidence 33333333332 2578899999998766555666666665555678899998865321 11111 124789999
Q ss_pred CChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhh
Q 038265 315 LPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSL 363 (883)
Q Consensus 315 L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 363 (883)
++.++..+++...+...+.... .+....+++.++|.|..+..+...
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999988754332222 245678889999999865554443
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=1.1e-09 Score=105.63 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=99.2
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCcccccccc-ccCCCCCCCeEEee
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLES-GIGCLSSLRFLMIS 662 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 662 (883)
..+.++++++. +..+|..+ .++|++|++++|...+..+..+..+++|++|++++|.+..++. .+..+++|+.|+++
T Consensus 8 ~~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 35778888775 67788644 4799999999976654444567899999999999999987664 46889999999999
Q ss_pred cCCCccccccccccCcccceeeeccccCCCCCcc-cCCCCCCccEEEeccCC
Q 038265 663 DCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPP-AMKYLSSLETLILLKCE 713 (883)
Q Consensus 663 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~L~~~~ 713 (883)
+|......+..+..+++|+.|++++|... .+|. .+..+++|+.|++++|+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence 97655444445789999999999998655 4554 46789999999999875
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.01 E-value=2e-09 Score=118.25 Aligned_cols=287 Identities=13% Similarity=0.061 Sum_probs=158.6
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-----C-----------CcHHHHHH
Q 038265 162 RTSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-----D-----------FGKRQIMT 225 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-----~-----------~~~~~~~~ 225 (883)
.+..|+||+++++.+.+++..... ......+.|+|++|+||||||+.+++... . .+...++.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 347899999999999998864210 13456899999999999999999987430 1 12234445
Q ss_pred HHHHHhhCCC-CCCCChHHHHHHHHHHcC--CCceEEEEeCCCCCC----hhhHHHHHHhcCC-CCCCCEEEEeecChHH
Q 038265 226 KIINSVIGGN-HGNLDPDRMQKVLRDSLN--GKRYLLVMDDVWNED----PRAWGELKSLLLG-GAEGSKILVTTRSNKV 297 (883)
Q Consensus 226 ~i~~~~~~~~-~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~v 297 (883)
.++..+.... ....+.......+.+.+. +++.+||||+++... ......+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 5544442111 112234555555655553 458999999996421 2233344433321 2335567888876543
Q ss_pred HHHH----cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhC---CCchHHHHHHhhhc-----
Q 038265 298 ALIM----GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCR---GIPLAVRTVGSLLY----- 365 (883)
Q Consensus 298 ~~~~----~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~---glPLai~~~~~~L~----- 365 (883)
.... ...-....+.+++++.++..+++...+...... ..-..+....+++.++ |.|..+..+.....
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP-GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS-SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 2111 111011479999999999999999865321111 1112345567777777 99984433322211
Q ss_pred -C--CCCHHHHHHHHccccccccCCCCCcchHHHHhhcCCChhhhHHhhhhccCCC-C-cccchhHHHHHH--HHhcC-C
Q 038265 366 -G--STDEHDWEHVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPK-D-YKFASVHLVQFW--MAQGL-L 437 (883)
Q Consensus 366 -~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~-~-~~~~~~~Li~~w--~a~gl-i 437 (883)
+ .-+.+..+.+..... ...+.-.+..++...+..+..++...+ + ..+....+.+.. +++.+ +
T Consensus 255 ~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred cCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 113334443332211 234556778899888888777774322 2 123333332211 11111 1
Q ss_pred cCCCCCchHHHHHHHHHHHHHhCCCceec
Q 038265 438 QSPNENEELEKIGMRYFKELCSRSFFQDL 466 (883)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 466 (883)
... .......+++.|...+++...
T Consensus 325 ~~~-----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EAV-----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCC-----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CCC-----CHHHHHHHHHHHHhCCCEEEE
Confidence 111 123456789999999999764
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.3e-09 Score=104.01 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=79.2
Q ss_pred cccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCC
Q 038265 561 SLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 640 (883)
Q Consensus 561 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 640 (883)
..+.++++++.+..+|..+. .+|++|+|++|.+.+..|..+.++++|++|+|++|...+..|..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35788999999998887764 7889999998875555577788899999999988765543344467888888888888
Q ss_pred cccccccc-ccCCCCCCCeEEeecCC
Q 038265 641 KQKSLLES-GIGCLSSLRFLMISDCG 665 (883)
Q Consensus 641 ~~~~~~~~-~~~~l~~L~~L~l~~~~ 665 (883)
|.+..++. .+..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88876655 47778888888887764
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.4e-09 Score=104.19 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=77.2
Q ss_pred ccEEEecCccccccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCcc-ccCCcccCEEEeCC
Q 038265 562 LRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKD-IRYLVSLRMFVVTT 640 (883)
Q Consensus 562 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~ 640 (883)
-+.++++++.+..+|..+. .+|++|++++|.+.+..|..+.++++|++|+|++|.. ..+|.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCC
Confidence 3678888888888888764 7888999998875555577788888899999988644 445544 57888888888888
Q ss_pred ccccccccc-cCCCCCCCeEEeecCC
Q 038265 641 KQKSLLESG-IGCLSSLRFLMISDCG 665 (883)
Q Consensus 641 ~~~~~~~~~-~~~l~~L~~L~l~~~~ 665 (883)
|.+..+|.. +..+++|+.|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 888766654 7778888888887764
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.97 E-value=2.4e-08 Score=109.31 Aligned_cols=266 Identities=14% Similarity=0.201 Sum_probs=144.4
Q ss_pred CceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccc-cCCCCCceEecccCCcccccc-CccccCCCccc
Q 038265 533 GRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRK-MGNLRQLRHLDLSGNRKIKKL-PNSICELQSLQ 610 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~ 610 (883)
..+..+.+.. ....+...+|.++ +|+.+.+..+ +..++.. |.+ .+|+.+.+.. . +..+ +..|.+|++|+
T Consensus 113 ~~l~~i~ip~----~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 113 KGYNEIILPN----SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLK 183 (401)
T ss_dssp SSCSEEECCT----TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCC
T ss_pred CCccEEEECC----ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCC
Confidence 4555555541 1222233445554 5777777655 5555443 444 3677777764 3 3433 34567777888
Q ss_pred EeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccc-cccccCcccceeeecccc
Q 038265 611 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLF-EDIDQLSVLRSLVINSCP 689 (883)
Q Consensus 611 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 689 (883)
.+++.+| .+..+|.....+.+|+.+.+..+-.......|.++++|+.+.+..+ +..++ ..+.+ .+|+.+.|.+
T Consensus 184 ~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-- 257 (401)
T 4fdw_A 184 KADLSKT-KITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-- 257 (401)
T ss_dssp EEECTTS-CCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--
T ss_pred eeecCCC-cceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--
Confidence 8888764 4445555444467777777775533334456677777777777652 33333 23344 6777777743
Q ss_pred CCCCC-cccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEE
Q 038265 690 RLISL-PPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQML 768 (883)
Q Consensus 690 ~~~~l-~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L 768 (883)
.+..+ ...|.+|++|+.+.+.++.... .....++...+ ..+++|+.+
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------------------~~~~~I~~~aF-~~c~~L~~l 305 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFND-------------------------------DPEAMIHPYCL-EGCPKLARF 305 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCC-------------------------------CTTCEECTTTT-TTCTTCCEE
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccC-------------------------------CcccEECHHHh-hCCccCCeE
Confidence 23333 3456777777777776542110 01112332222 455667777
Q ss_pred eecCCCCCccCC-ccCCCCccccccccccccccccCC-CCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCcc-CCCCee
Q 038265 769 TIGDCPNFMALP-RSLKDLEALENLLITSCPKLSSLP-EGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKI-AHIPQI 845 (883)
Q Consensus 769 ~l~~~~~l~~lp-~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~l~~l 845 (883)
.|.++ +..++ ..+.+|++|+.|.|.++ +..++ ..+.++ +|+.|.+.++.. .......|..+ ..+..+
T Consensus 306 ~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~-----~~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 306 EIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTP-----PQVFEKVWYGFPDDITVI 375 (401)
T ss_dssp CCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSC-----CBCCCSSCCCSCTTCCEE
T ss_pred EeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCC-----cccccccccCCCCCccEE
Confidence 66632 44443 34566677777777543 44443 345666 777777776532 11222233333 356667
Q ss_pred eeCCCcccch
Q 038265 846 DLDGEMIKSS 855 (883)
Q Consensus 846 ~l~~n~i~~~ 855 (883)
++..+.+...
T Consensus 376 ~vp~~~~~~y 385 (401)
T 4fdw_A 376 RVPAESVEKY 385 (401)
T ss_dssp EECGGGHHHH
T ss_pred EeCHHHHHHh
Confidence 7766655543
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.95 E-value=2.1e-09 Score=114.95 Aligned_cols=270 Identities=15% Similarity=0.093 Sum_probs=142.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCcHHHHHHHHHHHhhCCCCCCCCh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFGKRQIMTKIINSVIGGNHGNLDP 241 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 241 (883)
..+++|++..++.+..++..... .......|.|+|++|+|||++|+.+++... .|- ..........
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~------------~~~~~~~~~~ 77 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR------------VTSGPAIEKP 77 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE------------EECTTTCCSH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE------------EEeccccCCh
Confidence 46799999999998887753110 012235789999999999999999977531 100 0000001112
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCC------------------CCCCEEEEeecChHHHHHHcc
Q 038265 242 DRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG------------------AEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 242 ~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~iivTtr~~~v~~~~~~ 303 (883)
.++...+...+ .++.+|+||+++.........+...+... .++.++|.||.........-.
T Consensus 78 ~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~ 156 (324)
T 1hqc_A 78 GDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLL 156 (324)
T ss_dssp HHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTT
T ss_pred HHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHH
Confidence 22222222111 35679999999776644444444433221 023567776664321100000
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhhcCC--------CCHHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLLYGS--------TDEHDWEH 375 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~--------~~~~~w~~ 375 (883)
......+.+.+++.+|..+++...+...+.... .+....++++++|.|..+..+...+... -+.+....
T Consensus 157 ~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~ 233 (324)
T 1hqc_A 157 SRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALE 233 (324)
T ss_dssp TTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHH
T ss_pred hcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 011147899999999999999888754332222 3556889999999998887766554311 11222222
Q ss_pred HHccccccccCCCCCcchHHHHhhcCCChhhhHHhhhhccCCCCcc-----------cchhHH----HHHHHHhcCCcCC
Q 038265 376 VRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYK-----------FASVHL----VQFWMAQGLLQSP 440 (883)
Q Consensus 376 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~-----------~~~~~L----i~~w~a~gli~~~ 440 (883)
+.. .+...+..++..++..+..+.-...+.. +++..+ -.+-+..|++...
T Consensus 234 ~~~---------------~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~ 298 (324)
T 1hqc_A 234 ALA---------------ALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRT 298 (324)
T ss_dssp HHH---------------HHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEE
T ss_pred HHH---------------HhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcC
Confidence 221 1112234556666666555443222221 122211 1223455666544
Q ss_pred CCCchHHHHHHHHHH-HHHhCCCce
Q 038265 441 NENEELEKIGMRYFK-ELCSRSFFQ 464 (883)
Q Consensus 441 ~~~~~~~~~~~~~l~-~L~~~~ll~ 464 (883)
..+....+.|..++. ++.++++||
T Consensus 299 ~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (324)
T 1hqc_A 299 PRGRVPTELAYRHLGYPPPVGPLLE 323 (324)
T ss_dssp TTEEEECHHHHHHTTCCCCC-----
T ss_pred CccceecHHHHHHHhcCCCCCCCCC
Confidence 445555566666665 666666665
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=6.8e-09 Score=110.92 Aligned_cols=182 Identities=14% Similarity=0.130 Sum_probs=115.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDR 243 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 243 (883)
.+++|++..++.+.+++... +.+.+.++|++|+||||+|+.+++....-.. . ..-+..........+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~----~--~~~~~~~~~~~~~~~~ 88 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLGRSY----A--DGVLELNASDDRGIDV 88 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGH----H--HHEEEECTTSCCSHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcc----c--CCEEEecCccccChHH
Confidence 56999999999999998652 2223899999999999999999765311000 0 0001111111122344
Q ss_pred HHHHHHHHc-------CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHH-HHHcccCCCCceecCCC
Q 038265 244 MQKVLRDSL-------NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGTTGYNLQEL 315 (883)
Q Consensus 244 ~~~~l~~~l-------~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~~~l~~L 315 (883)
+.+.+.... .+++.++|+||++......+..+...+.....++++|+||+...-. .... .....+++.++
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~--sr~~~i~~~~~ 166 (323)
T 1sxj_B 89 VRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ--SQCAILRYSKL 166 (323)
T ss_dssp HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH--TTSEEEECCCC
T ss_pred HHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH--hhceEEeecCC
Confidence 444444333 4468899999998766556666666665555678888888764321 1111 11257999999
Q ss_pred ChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchH-HHHHHh
Q 038265 316 PYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLA-VRTVGS 362 (883)
Q Consensus 316 ~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~ 362 (883)
+.++..+++...+...+.... .+....|++.++|.|.. +..+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 167 SDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999987743332222 24567899999999954 444433
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=2.2e-09 Score=115.01 Aligned_cols=273 Identities=12% Similarity=0.087 Sum_probs=136.9
Q ss_pred CCcccEEEecCccccccccccCC-CCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCC-ccccC-------
Q 038265 559 SKSLRVLVLMNSAIEVLPRKMGN-LRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELP-KDIRY------- 629 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~------- 629 (883)
+.+++.|.++++--..-...+.. +++|++|+|++|... .....-+.++.+..+.+..+ .+| ..|..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeE-EecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 45677888876421110112222 778999999988743 11111122333445555443 233 34556
Q ss_pred -CcccCEEEeCCcccccc-ccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccC---CCCC-cccCCCCCC
Q 038265 630 -LVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPR---LISL-PPAMKYLSS 703 (883)
Q Consensus 630 -l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~l-~~~l~~l~~ 703 (883)
+++|+.|.+.. .+..+ +..|.++++|+.|++..|......+..+..+.++..+.+..... ...+ ...+..+..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88999999988 55543 45688889999999988765444455666766676665543111 1111 122334555
Q ss_pred cc-EEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccCC-c
Q 038265 704 LE-TLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMALP-R 781 (883)
Q Consensus 704 L~-~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp-~ 781 (883)
|+ .+.+.....+.... ........++..+.+.+.-...... .+...+++|+.|+|++|. +..+| .
T Consensus 178 L~~~i~~~~~~~l~~~~----------~~~~~~~~~~~~l~~~~~l~~~~~~--~l~~~~~~L~~l~L~~n~-i~~I~~~ 244 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEI----------MKAGLQPRDINFLTIEGKLDNADFK--LIRDYMPNLVSLDISKTN-ATTIPDF 244 (329)
T ss_dssp CEEEEEECTTCCHHHHH----------HHTTCCGGGCSEEEEEECCCHHHHH--HHHHHCTTCCEEECTTBC-CCEECTT
T ss_pred cceeEEecCCCcHHHHH----------hhcccCccccceEEEeeeecHHHHH--HHHHhcCCCeEEECCCCC-cceecHh
Confidence 55 34443322111000 0000111233444444321111111 111235666666666654 33333 3
Q ss_pred cCCCCccccccccccccccccCCC-CCCCCCCcC-eeeccCCcchhhhhCCCCCCCCCccCCCCeeeeCCCcccchhhh
Q 038265 782 SLKDLEALENLLITSCPKLSSLPE-GMHHLTTLK-TLAIEECPALCERCKPLTGEDWPKIAHIPQIDLDGEMIKSSDIQ 858 (883)
Q Consensus 782 ~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~ 858 (883)
.+.++++|+.|+|.+| ++.++. .|.+|++|+ .+++.+ .++ ......|....+|..+++.+|.++.++..
T Consensus 245 aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~----~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVT----AIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCC----EECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred hhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cce----EEchhhhhCCccCCEEEeCCCccCccchh
Confidence 4566666666666664 444443 356666666 666654 121 12223355556666666666666665543
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=5.5e-08 Score=106.42 Aligned_cols=240 Identities=13% Similarity=0.161 Sum_probs=162.6
Q ss_pred cCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccc-cccCCCCCceEecccCCccccccCccccCC
Q 038265 528 FLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLP-RKMGNLRQLRHLDLSGNRKIKKLPNSICEL 606 (883)
Q Consensus 528 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 606 (883)
.|.++ +|+.+.+... ...+...+|.++ +|+.+.+.+ .+..++ ..|.+|.+|+.+++++|. +..+|.....+
T Consensus 131 aF~~~-~L~~i~l~~~----i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~ 202 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG----LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVY 202 (401)
T ss_dssp TTTTC-CCSEEECCTT----CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTT
T ss_pred hcccC-CccEEEeCCC----ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEee
Confidence 34454 6888887622 223334456664 699999986 666665 458889999999999775 66777665557
Q ss_pred CcccEeecCCCCCCccC-CccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCcccc-ccccccCcccceee
Q 038265 607 QSLQTLNLGDCLELEEL-PKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYL-FEDIDQLSVLRSLV 684 (883)
Q Consensus 607 ~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~ 684 (883)
.+|+.+.|..+ +..+ ...|.++++|+.+.+..+-.......|.+ ++|+.+.+.. .+..+ ...+.++++|+.+.
T Consensus 203 ~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEE
Confidence 89999999753 4444 45678899999999987643344445666 7999999954 34444 46788999999999
Q ss_pred eccccCC-----CCCcccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCccchhhhhc
Q 038265 685 INSCPRL-----ISLPPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQ 759 (883)
Q Consensus 685 l~~~~~~-----~~l~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 759 (883)
+.++... ..-+..|..|++|+.+.|.+ .++.++...+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-------------------------------------~i~~I~~~aF- 319 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-------------------------------------SIRILGQGLL- 319 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-------------------------------------TCCEECTTTT-
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-------------------------------------ceEEEhhhhh-
Confidence 9876532 12245688888998888753 1222222222
Q ss_pred CCCCCccEEeecCCCCCccC-CccCCCCccccccccccccccccCCCCCCCCC-CcCeeeccCC
Q 038265 760 GSSKTLQMLTIGDCPNFMAL-PRSLKDLEALENLLITSCPKLSSLPEGMHHLT-TLKTLAIEEC 821 (883)
Q Consensus 760 ~~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~-~L~~L~l~~c 821 (883)
..+++|+.+.|..+ +..+ +..+.++ +|+.|.+.+|......+..+.+++ +++.|.+-.+
T Consensus 320 ~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred cCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 45677888888654 4444 3456777 888888888764443344556664 7788888664
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=1e-08 Score=98.18 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=69.2
Q ss_pred ceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccc-cCCCCCCCeEEeec
Q 038265 585 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMISD 663 (883)
Q Consensus 585 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 663 (883)
-+.+++++|. ++.+|..+. ++|++|+|++|...+..|..+..+++|++|++++|.+..+|.. +..+++|+.|++++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3677888765 677777554 7888888888766555566777788888888888877766544 46677777777777
Q ss_pred CCCcccccc-ccccCcccceeeecccc
Q 038265 664 CGNLEYLFE-DIDQLSVLRSLVINSCP 689 (883)
Q Consensus 664 ~~~~~~~~~-~l~~l~~L~~L~l~~~~ 689 (883)
|... .+|. .+..+++|+.|+|++|.
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCC
Confidence 5433 3443 36666777777776654
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=1.1e-08 Score=97.49 Aligned_cols=104 Identities=22% Similarity=0.220 Sum_probs=66.8
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccc-cCCCCCCCeEEee
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESG-IGCLSSLRFLMIS 662 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~ 662 (883)
..+.+++++|. +..+|..+ .++|++|+|++|...+..|..+..+++|++|++++|.+..++.. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35677887765 56677655 36778888887665555566677777777777777777755543 4667777777776
Q ss_pred cCCCccccccccccCcccceeeeccccC
Q 038265 663 DCGNLEYLFEDIDQLSVLRSLVINSCPR 690 (883)
Q Consensus 663 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 690 (883)
+|......+..+..+++|+.|+|++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 6543332223466666666666666543
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=4.2e-08 Score=104.89 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=114.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPD 242 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (883)
..+++|+++.++.+..++... ....+.++|++|+||||+|+.+++......... ..-.+.... ....+
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~----~~~~~~~~~--~~~~~ 91 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRH----NFLELNASD--ERGIN 91 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH----HEEEEETTC--HHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC----ceEEeeccc--cCchH
Confidence 356999999999999988663 233489999999999999999977531100000 000000000 00001
Q ss_pred HHHHHHHHH-----c-CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHH-HHHcccCCCCceecCCC
Q 038265 243 RMQKVLRDS-----L-NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LIMGTMRGTTGYNLQEL 315 (883)
Q Consensus 243 ~~~~~l~~~-----l-~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~~~l~~L 315 (883)
.....+.+. + .+++.++|+|+++.........+...+.....++++|+||...... ..... ....+.+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l 169 (327)
T 1iqp_A 92 VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPL 169 (327)
T ss_dssp TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH--TEEEEECCCC
T ss_pred HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh--hCcEEEecCC
Confidence 111122221 1 1568899999998776666666766665555678899888764321 11111 1146899999
Q ss_pred ChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhhh
Q 038265 316 PYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSLL 364 (883)
Q Consensus 316 ~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 364 (883)
+.++..+++...+...+...+ .+....|++.++|.|..+..+...+
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999888754332222 3456788999999998665544433
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.67 E-value=1.3e-07 Score=103.22 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=116.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhCC-
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIGG- 234 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~~- 234 (883)
.+++|++..++.+...+... ...+.+.|+|++|+||||+|+.+.+... .+........+.......
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 46999999999999998653 2235789999999999999999876541 111111111111100000
Q ss_pred ----CCCCCChHHHHHHHHHH----cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHH-HHHHcccC
Q 038265 235 ----NHGNLDPDRMQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV-ALIMGTMR 305 (883)
Q Consensus 235 ----~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~~~~~ 305 (883)
.......+.....+... ..+++.++|+||++..+......+...+.....+..+|++|....- ..... .
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~--s 168 (373)
T 1jr3_A 91 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL--S 168 (373)
T ss_dssp EEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH--T
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH--h
Confidence 00001111222222221 1356789999999776666667777766655556777877765431 11111 1
Q ss_pred CCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHh
Q 038265 306 GTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGS 362 (883)
Q Consensus 306 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 362 (883)
....+++.+++.++..+++...+...+.... .+....|++.++|.|..+..+..
T Consensus 169 r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred heeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 1267899999999999999877643332222 24567899999999987766543
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4.5e-08 Score=105.64 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=75.8
Q ss_pred EEEecCc-cccccccccCCCCCceEecccC-CccccccC-ccccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCC
Q 038265 564 VLVLMNS-AIEVLPRKMGNLRQLRHLDLSG-NRKIKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT 640 (883)
Q Consensus 564 ~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~-~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 640 (883)
.++++++ .+..+|. +..+.+|++|+|++ |. +..+| ..|+++++|++|+|++|...+..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577777 7888888 88888888888885 65 44444 5688888888888888766666666778888888888888
Q ss_pred ccccccccccCCCCCCCeEEeecCCC
Q 038265 641 KQKSLLESGIGCLSSLRFLMISDCGN 666 (883)
Q Consensus 641 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 666 (883)
|.+..+|..+....+|+.|++.+|..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCc
Confidence 88887665544333488888887653
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=4e-09 Score=114.26 Aligned_cols=155 Identities=19% Similarity=0.132 Sum_probs=84.7
Q ss_pred CCcccEEEecCcccccc-----ccccC-CCCCceEecccCCccccccCccc-cCCCcccEeecCCCCCCccCCccc----
Q 038265 559 SKSLRVLVLMNSAIEVL-----PRKMG-NLRQLRHLDLSGNRKIKKLPNSI-CELQSLQTLNLGDCLELEELPKDI---- 627 (883)
Q Consensus 559 ~~~L~~L~l~~~~~~~l-----p~~~~-~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~lp~~~---- 627 (883)
+++|+.|++++|.+... ...+. ...+|++|+|++|.+.......+ ..+++|++|+|++|.....-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35677777777776532 22222 23567777777765432222222 234567777777765443222222
Q ss_pred -cCCcccCEEEeCCccccc-----cccccCCCCCCCeEEeecCCCcc----ccccccccCcccceeeeccccCCC----C
Q 038265 628 -RYLVSLRMFVVTTKQKSL-----LESGIGCLSSLRFLMISDCGNLE----YLFEDIDQLSVLRSLVINSCPRLI----S 693 (883)
Q Consensus 628 -~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~----~ 693 (883)
...++|+.|++++|.++. ++..+..+++|++|+|++|.... .++..+..+++|+.|+|++|.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234667777777776652 22334556677777777765322 223445566677777777765432 2
Q ss_pred CcccCCCCCCccEEEeccCC
Q 038265 694 LPPAMKYLSSLETLILLKCE 713 (883)
Q Consensus 694 l~~~l~~l~~L~~L~L~~~~ 713 (883)
++..+...++|++|+|++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 33344455667777777664
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1e-08 Score=111.05 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=106.8
Q ss_pred CceeEEeeccCCccc-hhhhhHHhhc-cCCcccEEEecCccccc--cccccCCCCCceEecccCCccccccCccc-----
Q 038265 533 GRVRTIMLPIDDERT-SQSFVTSCIS-KSKSLRVLVLMNSAIEV--LPRKMGNLRQLRHLDLSGNRKIKKLPNSI----- 603 (883)
Q Consensus 533 ~~l~~l~l~~~~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~----- 603 (883)
+.++.|.+..+.... ....+...+. ..++|+.|+|++|.+.. +......+.+|++|+|++|.+...-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456777776443321 1222333333 33789999999998853 22223345689999999987543322223
Q ss_pred cCCCcccEeecCCCCCCc----cCCccccCCcccCEEEeCCccccc-----cccccCCCCCCCeEEeecCCCcc----cc
Q 038265 604 CELQSLQTLNLGDCLELE----ELPKDIRYLVSLRMFVVTTKQKSL-----LESGIGCLSSLRFLMISDCGNLE----YL 670 (883)
Q Consensus 604 ~~l~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~~ 670 (883)
...++|++|+|++|.... .++..+..+++|++|++++|.+.. +...+...++|++|++++|.... .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 246789999999986543 345566788899999999998873 23456777899999999986533 23
Q ss_pred ccccccCcccceeeeccccCC
Q 038265 671 FEDIDQLSVLRSLVINSCPRL 691 (883)
Q Consensus 671 ~~~l~~l~~L~~L~l~~~~~~ 691 (883)
+..+...++|+.|+|++|...
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 445567789999999998754
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.55 E-value=3.4e-07 Score=97.40 Aligned_cols=183 Identities=12% Similarity=0.072 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC-CCCCChH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN-HGNLDPD 242 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 242 (883)
.+++|++..++.+.+++... +...+.++|++|+|||++|+.+++....-... .-...+.... .......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 86 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWR----DNFIEMNASDERGIDVVR 86 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHH----HHCEEEETTSTTCTTTSS
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcCCccc----CCeEEEeCccccChHHHH
Confidence 46999999999988887542 22338999999999999999997753110000 0000011111 1111122
Q ss_pred HHHHHHHHH--c-CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHH-HHHHcccCCCCceecCCCChh
Q 038265 243 RMQKVLRDS--L-NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV-ALIMGTMRGTTGYNLQELPYK 318 (883)
Q Consensus 243 ~~~~~l~~~--l-~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~~~~~~~~~~~l~~L~~~ 318 (883)
.....+... + .+++.++|+|+++.........+...+.....++++|+||....- ..... .....+++.+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~--sr~~~i~~~~~~~~ 164 (319)
T 2chq_A 87 HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SRCAVFRFKPVPKE 164 (319)
T ss_dssp HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH--TTCEEEECCCCCHH
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH--hhCeEEEecCCCHH
Confidence 222222211 1 256889999999776655556666666655567788888876431 11111 11257999999999
Q ss_pred cHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHH
Q 038265 319 DCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVG 361 (883)
Q Consensus 319 ~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 361 (883)
+..+++...+...+.... .+....+++.++|.+..+....
T Consensus 165 ~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 165 AMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 999999888754433222 3456788899999997655443
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=1.7e-08 Score=108.34 Aligned_cols=57 Identities=28% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccC--CCCCCccEEEec
Q 038265 651 GCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAM--KYLSSLETLILL 710 (883)
Q Consensus 651 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l--~~l~~L~~L~L~ 710 (883)
..+++|+.|++++|..+. ++. + .+++|++|+|..|.........+ ..+++|++|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 445566666666553222 222 2 25666666666554322111112 246667777664
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=1.2e-07 Score=101.83 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=65.4
Q ss_pred hccCCcccEEEecCcccc----------ccccccCCCCCceEecccCCccccccCccccCCCcccEeecCCCCCCccCCc
Q 038265 556 ISKSKSLRVLVLMNSAIE----------VLPRKMGNLRQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPK 625 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~----------~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~ 625 (883)
..++++|+.|.+.+.... .++..+..+++|+.|+|++|... .+|. + .+++|+.|+|..|........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445667777766543221 12223344555666666554211 2332 2 255566666554433222112
Q ss_pred ccc--CCcccCEEEeCC--ccc------ccccccc--CCCCCCCeEEeecCCCcccccccc---ccCcccceeeeccccC
Q 038265 626 DIR--YLVSLRMFVVTT--KQK------SLLESGI--GCLSSLRFLMISDCGNLEYLFEDI---DQLSVLRSLVINSCPR 690 (883)
Q Consensus 626 ~~~--~l~~L~~L~l~~--~~~------~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~ 690 (883)
.+. .+++|++|+|+. +.. ..+...+ ..+++|+.|++.+|......+..+ ..+++|++|+|+.|..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 222 455555555532 110 0000111 234566666665554332211111 2355566666655432
Q ss_pred CC----CCcccCCCCCCccEEEeccC
Q 038265 691 LI----SLPPAMKYLSSLETLILLKC 712 (883)
Q Consensus 691 ~~----~l~~~l~~l~~L~~L~L~~~ 712 (883)
.. .++..+.++++|+.|+|++|
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCC
Confidence 22 12222334455555555544
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.45 E-value=5.2e-06 Score=91.00 Aligned_cols=128 Identities=10% Similarity=0.065 Sum_probs=68.5
Q ss_pred ccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcccccccc-ccCCCCCceEecccCCccccccCccccC
Q 038265 527 SFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPR-KMGNLRQLRHLDLSGNRKIKKLPNSICE 605 (883)
Q Consensus 527 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 605 (883)
..|.+|.+|+++.+.. ....+...+|.+|.+|+.+++.++ +..++. .+.++.+|+.+.+..+ ....-...+..
T Consensus 65 ~AF~~c~~L~~i~lp~----~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS----TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTCTTEEEEECCT----TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHhhCCCCceEEEeCC----CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 4577888999988862 223334557888999999999754 555543 4667777877776532 12111222333
Q ss_pred CCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEee
Q 038265 606 LQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMIS 662 (883)
Q Consensus 606 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 662 (883)
+..+..........+ -...+.++.+|+.+.+..+........+..+++|+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 139 CDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp CCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccccCcccccc--chhhhcccCCCcEEecCCccceeccccccCCCCceEEEcC
Confidence 332222222211111 1234555566666665544333333445555555555554
No 168
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.1e-06 Score=91.30 Aligned_cols=157 Identities=14% Similarity=0.069 Sum_probs=94.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC--------------------CCCcHHHHH
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ--------------------KDFGKRQIM 224 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~--------------------~~~~~~~~~ 224 (883)
.+.||++++++|...|...-. ......+.|+|++|+|||++|++|.+.. ...+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 378999999999888765321 2456788999999999999999997754 112456788
Q ss_pred HHHHHHhhCCCCCCCChHHHHHHHHHHc---CCCceEEEEeCCCCCChhhHHHHHHhcCC-CCCCCE--EEEeecCh---
Q 038265 225 TKIINSVIGGNHGNLDPDRMQKVLRDSL---NGKRYLLVMDDVWNEDPRAWGELKSLLLG-GAEGSK--ILVTTRSN--- 295 (883)
Q Consensus 225 ~~i~~~~~~~~~~~~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~--iivTtr~~--- 295 (883)
..+.+++.+..............+.+.+ .+++++++||+++... .-+.+...+.. ...+++ ||.++...
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 8888888655332222223233333333 4577999999997643 11222222210 012232 33334322
Q ss_pred H--H----HHHHcccCCCCceecCCCChhcHHHHHHHHHh
Q 038265 296 K--V----ALIMGTMRGTTGYNLQELPYKDCLSLFMKCAF 329 (883)
Q Consensus 296 ~--v----~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~ 329 (883)
. + ...+. ...+.+.+.+.+|-.+++.+++.
T Consensus 177 ~~~L~~~v~SR~~----~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH----FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT----EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC----ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1 11221 14689999999999999988873
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.41 E-value=6.2e-07 Score=96.64 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=73.6
Q ss_pred EecccCCccccccCccccCCCcccEeecCC-CCCCccCCccccCCcccCEEEeCCccccccc-cccCCCCCCCeEEeecC
Q 038265 587 HLDLSGNRKIKKLPNSICELQSLQTLNLGD-CLELEELPKDIRYLVSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISDC 664 (883)
Q Consensus 587 ~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~-~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~ 664 (883)
.++++++..+..+|. +..+++|++|+|++ |...+..|..|..+++|++|+|++|.+..++ ..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457776524677888 88889999999986 5444444467888999999999998888554 46788888999999886
Q ss_pred CCccccccc-cccCcccceeeeccccC
Q 038265 665 GNLEYLFED-IDQLSVLRSLVINSCPR 690 (883)
Q Consensus 665 ~~~~~~~~~-l~~l~~L~~L~l~~~~~ 690 (883)
.. ..+|.. +..++ |+.|+|.+|..
T Consensus 91 ~l-~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 AL-ESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CC-SCCCSTTTCSCC-CCEEECCSSCC
T ss_pred cc-ceeCHHHcccCC-ceEEEeeCCCc
Confidence 54 445544 34444 88888887764
No 170
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.8e-06 Score=93.31 Aligned_cols=189 Identities=12% Similarity=0.070 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-CC-Cc-----HHHHHHH--HHHH----
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-KD-FG-----KRQIMTK--IINS---- 230 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~-~~-----~~~~~~~--i~~~---- 230 (883)
.+++|.+...+.+..++.... .... +.|+|+.|+||||+|+.+.... .. .+ ...+... ....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 568999998888887772211 2233 8999999999999999887732 10 00 0000000 0000
Q ss_pred -------hhCCCCCCCChHHHHHHHHHHc--------------CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEE
Q 038265 231 -------VIGGNHGNLDPDRMQKVLRDSL--------------NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKIL 289 (883)
Q Consensus 231 -------~~~~~~~~~~~~~~~~~l~~~l--------------~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 289 (883)
+........+.....+.+.+.. .+++-++|||++...+......+...+.....+..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 0000000111111223333322 2255699999998776655666666665444567888
Q ss_pred EeecChH-HHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCC-cchHHHHHHHHHHhCCCchHHHHHHh
Q 038265 290 VTTRSNK-VALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKH-PNLVKIGEKIMEKCRGIPLAVRTVGS 362 (883)
Q Consensus 290 vTtr~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~-~~~~~~~~~i~~~c~glPLai~~~~~ 362 (883)
++|.+.. +..... .....+++.+++.++..+.+...+...+...+ + +....|++.++|.+-.+..+..
T Consensus 169 l~t~~~~~l~~~l~--sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 169 MVCDSMSPIIAPIK--SQCLLIRCPAPSDSEISTILSDVVTNERIQLETK---DILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEESCSCSSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCS---HHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEeCCHHHHHHHHH--hhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 8887632 111111 11267899999999999999887744333222 2 4567889999999876655443
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.5e-06 Score=98.46 Aligned_cols=191 Identities=16% Similarity=0.211 Sum_probs=105.7
Q ss_pred CCccccchhhHHHHHHHHhcCC-----------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccC---------CCCcHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTS-----------DGESETVSVIPIVGIGGLGKTALAKLVYNDQ---------KDFGKRQ 222 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---------~~~~~~~ 222 (883)
-.+++|++..++++.+++.... ..+....+.+.|+|++|+||||+|+.+++.. .......
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~ 117 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT 117 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHH
Confidence 3579999999999999986410 0001235789999999999999999998765 1111222
Q ss_pred HHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh---hhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 223 IMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP---RAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
.....+...........-...... .....+++.+||+|+++.... ..+..+...+.. .+..||+++.+.....
T Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~ 193 (516)
T 1sxj_A 118 LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPK 193 (516)
T ss_dssp HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSST
T ss_pred HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCcc
Confidence 222222221111000000000000 001235778999999965432 123444444432 2344666655432111
Q ss_pred HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc-hHHHHH
Q 038265 300 IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP-LAVRTV 360 (883)
Q Consensus 300 ~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 360 (883)
..........+.+.+++.++..+.+...+...+....+ +....|++.++|.+ -++..+
T Consensus 194 l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 194 MRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp TGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred chhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 01111123568999999999999998877554433233 33578889999954 445544
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=4.5e-06 Score=90.08 Aligned_cols=181 Identities=9% Similarity=0.075 Sum_probs=107.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHH-HhhCCCC-CCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIIN-SVIGGNH-GNLD 240 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~-~~~~~~~-~~~~ 240 (883)
-.+++|+++.++.+..++... ....+.++|++|+||||+|+.+.+.... ..... .+..-.. ....
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~ 102 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYG-------PDLMKSRILELNASDERG 102 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHH-------HHHHTTSEEEECSSSCCC
T ss_pred HHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCC-------CcccccceEEEccccccc
Confidence 457999999999999988652 1223899999999999999998764210 00000 0000000 0011
Q ss_pred hHHHHHHHHHH----------------cCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcc
Q 038265 241 PDRMQKVLRDS----------------LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGT 303 (883)
Q Consensus 241 ~~~~~~~l~~~----------------l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~ 303 (883)
...+.+.+... -.+++-++++|+++.........+...+.......++|++|.... +......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 103 ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 11111111111 123556999999976665555556665554445667888775432 1111111
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVG 361 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 361 (883)
....+.+.+++.++..+.+...+...+.... .+....|++.++|.|..+..+.
T Consensus 183 --R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 183 --QCSKFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp --HSEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred --cCceEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 0146899999999999999887744332222 3556889999999998655443
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.34 E-value=3.4e-06 Score=90.37 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=106.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-CcHHHHHHHHHHHhhCCCCCCCCh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-FGKRQIMTKIINSVIGGNHGNLDP 241 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~ 241 (883)
-.+++|++..++++..++..... .......|.|+|++|+|||++|+.+++.... |-. +.... ....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~----------~~~~~--~~~~ 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEMSANIKT----------TAAPM--IEKS 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE----------EEGGG--CCSH
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE----------ecchh--ccch
Confidence 35799999999999888864210 0123456899999999999999999776421 100 00000 0112
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCC------------------CCCEEEEeecChHHH-HHHc
Q 038265 242 DRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA------------------EGSKILVTTRSNKVA-LIMG 302 (883)
Q Consensus 242 ~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iivTtr~~~v~-~~~~ 302 (883)
......+.. ..+..+|+||+++.........+...+.... ++..+|.||...... ....
T Consensus 95 ~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~ 172 (338)
T 3pfi_A 95 GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLR 172 (338)
T ss_dssp HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHH
T ss_pred hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHH
Confidence 222222221 2466899999997765544444544443221 124566666543211 1111
Q ss_pred ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHh
Q 038265 303 TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGS 362 (883)
Q Consensus 303 ~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 362 (883)
. .....+.+.+++.++..+++...+...+.. -..+....+++.+.|.|-.+..+..
T Consensus 173 ~-R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 173 D-RFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp T-TCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred h-hcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1 112578999999999999998887443322 2235567888899999965554443
No 174
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.34 E-value=8.2e-07 Score=90.08 Aligned_cols=175 Identities=13% Similarity=0.037 Sum_probs=95.7
Q ss_pred CCccccch---hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCC
Q 038265 163 TSDIIGRY---EDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNL 239 (883)
Q Consensus 163 ~~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 239 (883)
-++|+|.+ ..++.+..+... ...+.+.|+|++|+||||+|+.+++....- +......
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--------------~~~~~~~ 86 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACARANEL--------------ERRSFYI 86 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHHHHHT--------------TCCEEEE
T ss_pred hhhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHHHc--------------CCeEEEE
Confidence 35677633 445555555543 234688999999999999999987643100 0000000
Q ss_pred ChHHHHHHHHHHc--CCCceEEEEeCCCCCChhh--HHHHHHhcCCC-CCCC-EEEEeecCh---------HHHHHHccc
Q 038265 240 DPDRMQKVLRDSL--NGKRYLLVMDDVWNEDPRA--WGELKSLLLGG-AEGS-KILVTTRSN---------KVALIMGTM 304 (883)
Q Consensus 240 ~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~gs-~iivTtr~~---------~v~~~~~~~ 304 (883)
+.......+.+.+ -.++.+||+||++...... .+.+...+... ..+. ++|+||+.. .+...+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~ 166 (242)
T 3bos_A 87 PLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWG 166 (242)
T ss_dssp EGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHS
T ss_pred EHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcC
Confidence 0000000000111 1356799999996543322 22333332210 1122 488877632 222222111
Q ss_pred CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHHHhh
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTVGSL 363 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 363 (883)
..+.+.+++.++..+++...+...+.... .+....+++.++|.+-.+..+...
T Consensus 167 ---~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 167 ---LTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp ---EEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ---ceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHHH
Confidence 56899999999999999988754332222 355678889999988776655443
No 175
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.30 E-value=2.7e-07 Score=89.89 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=38.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...++||++.++++.+++.. ...+.+.|+|++|+|||++|+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999865 224567899999999999999987653
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.27 E-value=1.5e-06 Score=90.58 Aligned_cols=189 Identities=17% Similarity=0.122 Sum_probs=100.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDG-------ESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
-.+++|.++.++++.+.+...... +-...+.+.|+|++|+|||+||+.+++.....-.. + ....+...
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~-v---~~~~~~~~- 90 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIR-V---VGSELVKK- 90 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE-E---EGGGGCCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE-E---ehHHHHHh-
Confidence 467999999999998877431000 00224568999999999999999998765210000 0 00000000
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCC-----------Ch---hhHHHHHHhcC--CCCCCCEEEEeecChHHHH
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE-----------DP---RAWGELKSLLL--GGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~~---~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~ 299 (883)
............+......++.+|+||+++.. +. .....+...+. ....+..||.||.......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 01111112222333333456689999999532 11 11111222221 2233567777877543221
Q ss_pred H--HcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCC-CchHHHHH
Q 038265 300 I--MGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRG-IPLAVRTV 360 (883)
Q Consensus 300 ~--~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~ 360 (883)
. .........+.+..++.++..+++...+.......... ...+++.+.| .|-.|..+
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 1 11001114688999999999999998875433222222 2566777766 44444443
No 177
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=8.6e-06 Score=89.99 Aligned_cols=155 Identities=18% Similarity=0.117 Sum_probs=94.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC---------CCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEE
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ---------KDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVM 261 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llvl 261 (883)
...+.|+|++|+||||||+.+++.. -..+...+..++...+... . ...+...+..+.-+|+|
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~vL~I 200 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG-----K----LNEFREKYRKKVDILLI 200 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTT-----C----HHHHHHHHTTTCSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcc-----c----HHHHHHHhcCCCCEEEE
Confidence 5679999999999999999998753 1123444444444444321 1 12233444446789999
Q ss_pred eCCCCCCh--hhHHHHHHhcCC-CCCCCEEEEeecCh---------HHHHHHcccCCCCceecCCCChhcHHHHHHHHHh
Q 038265 262 DDVWNEDP--RAWGELKSLLLG-GAEGSKILVTTRSN---------KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAF 329 (883)
Q Consensus 262 Ddv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~ 329 (883)
||++.... ..-+.+...+.. ...|..||+||.+. .+...+... ..+.+++++.++-.+++...+.
T Consensus 201 DEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g---~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 201 DDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG---LVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp ECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS---BCCBCCCCCHHHHHHHHHHHHH
T ss_pred eCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC---eEEEeCCCCHHHHHHHHHHHHH
Confidence 99965432 122233333211 13467899998862 233333221 5689999999999999998875
Q ss_pred cCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 330 KEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
..+...++ ++...|++.++|.+-.+.-+
T Consensus 278 ~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 278 IEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 33322222 33567888999988655443
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.26 E-value=7.6e-06 Score=90.20 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=101.3
Q ss_pred CCccccchhhH---HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-CcHHHHHHHHHHHhhCCCCCC
Q 038265 163 TSDIIGRYEDG---EKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-FGKRQIMTKIINSVIGGNHGN 238 (883)
Q Consensus 163 ~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~~~~i~~~~~~~~~~~ 238 (883)
-.++||.+..+ ..+...+.. ...+.+.++|++|+||||+|+.+++.... |.. +. ...
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~----------l~---a~~ 85 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIARYANADVER----------IS---AVT 85 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE----------EE---TTT
T ss_pred HHHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE----------EE---ecc
Confidence 35789998888 677777755 23468999999999999999999876521 100 00 001
Q ss_pred CChHHHHHHHH----HHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEE-eecChHH--HHHHcccCCCCcee
Q 038265 239 LDPDRMQKVLR----DSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV-TTRSNKV--ALIMGTMRGTTGYN 311 (883)
Q Consensus 239 ~~~~~~~~~l~----~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v--~~~~~~~~~~~~~~ 311 (883)
.....+...+. ....+++.+|++|+++.......+.+...+..+ ...+|. ||.+... ..... .....+.
T Consensus 86 ~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~--sR~~v~~ 161 (447)
T 3pvs_A 86 SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL--SRARVYL 161 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH--TTEEEEE
T ss_pred CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh--CceeEEe
Confidence 11111111111 112467889999999876544445555555442 233443 4444321 11111 1125788
Q ss_pred cCCCChhcHHHHHHHHHhcCCC----CCCcchHHHHHHHHHHhCCCchHHHHHH
Q 038265 312 LQELPYKDCLSLFMKCAFKEGK----EKHPNLVKIGEKIMEKCRGIPLAVRTVG 361 (883)
Q Consensus 312 l~~L~~~~a~~lf~~~a~~~~~----~~~~~~~~~~~~i~~~c~glPLai~~~~ 361 (883)
+.+++.++..+++.+.+..... ....-..+....+++.++|.+-.+..+.
T Consensus 162 l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 162 LKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999999999999888743111 1111223566788888999887655443
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.25 E-value=9.3e-06 Score=83.37 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=97.9
Q ss_pred CCccccchhhHHHHHHHHh---cCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C---cHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLM---QTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F---GKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~---~~~~~~~~i~~~~~ 232 (883)
-.+++|.++.++.+.+++. .+.. .+....+.|.|+|++|+|||++|+.+++.... + +... +.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~--------~~ 76 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAE--------FV 76 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTT--------TS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHH--------HH
Confidence 4578999988888766542 1110 01123456889999999999999999775410 0 0000 00
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC------------h---hhHHHHHHhcCC--CCCCCEEEEeecCh
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED------------P---RAWGELKSLLLG--GAEGSKILVTTRSN 295 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~------------~---~~~~~l~~~l~~--~~~gs~iivTtr~~ 295 (883)
..............+.........+|+||+++... . .....+...+.. ...+..||.||...
T Consensus 77 -~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 77 -EVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA 155 (262)
T ss_dssp -SSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred -hhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh
Confidence 00011111222233333334567899999997531 1 111122222222 12345666666554
Q ss_pred HHHHH-H-cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch-HHHHHH
Q 038265 296 KVALI-M-GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL-AVRTVG 361 (883)
Q Consensus 296 ~v~~~-~-~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 361 (883)
..... . ........+.+...+.++-.+++...+...+.... .......+++.+.|.+- .|..+.
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHHHHH
Confidence 32211 1 10011256789999999999999888744332211 11234678888888754 444443
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.23 E-value=1.7e-05 Score=85.92 Aligned_cols=185 Identities=15% Similarity=0.122 Sum_probs=106.1
Q ss_pred CCccccchhhHHHH---HHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----------------CCcHHHH
Q 038265 163 TSDIIGRYEDGEKI---IELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK----------------DFGKRQI 223 (883)
Q Consensus 163 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----------------~~~~~~~ 223 (883)
.+++||++..++.+ ...+.... ...+.+.|+|++|+|||++|+.+.+... .......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHH
Confidence 45799999887764 44444321 2236899999999999999999986542 1223334
Q ss_pred HHHHHHHhhCCC---------------------------CC---CCChHHHHHHHHHHc-----CCC----ceEEEEeCC
Q 038265 224 MTKIINSVIGGN---------------------------HG---NLDPDRMQKVLRDSL-----NGK----RYLLVMDDV 264 (883)
Q Consensus 224 ~~~i~~~~~~~~---------------------------~~---~~~~~~~~~~l~~~l-----~~k----r~LlvlDdv 264 (883)
+.+.+....+.. .. ......+...+.... .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 433333321100 00 000122222222211 123 359999999
Q ss_pred CCCChhhHHHHHHhcCCCCCCCEEEEeecC-----------------hHHHHHHcccCCCCceecCCCChhcHHHHHHHH
Q 038265 265 WNEDPRAWGELKSLLLGGAEGSKILVTTRS-----------------NKVALIMGTMRGTTGYNLQELPYKDCLSLFMKC 327 (883)
Q Consensus 265 ~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-----------------~~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~ 327 (883)
+..+......+...+...... .++++|.. +.+...+ ..+.+.+++.++..+++...
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~------~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL------LIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE------EEEEECCCCHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc------cEEEecCCCHHHHHHHHHHH
Confidence 776665566666666543333 34444431 2222221 45899999999999999988
Q ss_pred HhcCCCCCCcchHHHHHHHHHHhC-CCchHHHHHH
Q 038265 328 AFKEGKEKHPNLVKIGEKIMEKCR-GIPLAVRTVG 361 (883)
Q Consensus 328 a~~~~~~~~~~~~~~~~~i~~~c~-glPLai~~~~ 361 (883)
+...+.... .+....|++.+. |.|-.+..+.
T Consensus 272 ~~~~~~~~~---~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 272 CEEEDVEMS---EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHTTCCBC---HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCCCC---HHHHHHHHHHhcCCCHHHHHHHH
Confidence 754333222 345678888887 7776555443
No 181
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=1.2e-05 Score=87.95 Aligned_cols=149 Identities=18% Similarity=0.136 Sum_probs=89.1
Q ss_pred HhhccCCcccEEEecCccccccc-cccCCCCCceEecccCCcccccc-CccccCCCcccEeecCCCCCCccCCccccCCc
Q 038265 554 SCISKSKSLRVLVLMNSAIEVLP-RKMGNLRQLRHLDLSGNRKIKKL-PNSICELQSLQTLNLGDCLELEELPKDIRYLV 631 (883)
Q Consensus 554 ~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 631 (883)
.+|..+.+|+.+.+.++. ..++ ..+.++.+|+.+.+..+ +..+ ...+.++..|+.+.+..+ ...+........
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~ 230 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKT 230 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccC
Confidence 457778888888886543 3343 34677788888888654 3333 345667778887777643 223333444556
Q ss_pred ccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccEEEecc
Q 038265 632 SLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLETLILLK 711 (883)
Q Consensus 632 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~ 711 (883)
+|+.+.+...........+..+.+|+.+.+..+ ........+..+..|+.+...... .....+..+.+|+.+.+..
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT
T ss_pred CCceEEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---ecccccccccccccccccc
Confidence 777777765544333445677788888887653 222223456667777777664421 1123466677777777643
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.21 E-value=5.7e-06 Score=87.99 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=102.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPD 242 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (883)
-++++|.++.++.+.+++... ...+++.+.|++|+|||++|+.+.+.... .+..-.......+
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l~~------------~~~~i~~~~~~~~ 87 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDVNA------------DMMFVNGSDCKID 87 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHTTE------------EEEEEETTTCCHH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCC------------CEEEEcccccCHH
Confidence 467999999999999998752 23457888899999999999999876510 0000000111122
Q ss_pred HHHHHHHHHc-----CCCceEEEEeCCCCCC-hhhHHHHHHhcCCCCCCCEEEEeecChH-----HHHHHcccCCCCcee
Q 038265 243 RMQKVLRDSL-----NGKRYLLVMDDVWNED-PRAWGELKSLLLGGAEGSKILVTTRSNK-----VALIMGTMRGTTGYN 311 (883)
Q Consensus 243 ~~~~~l~~~l-----~~kr~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-----v~~~~~~~~~~~~~~ 311 (883)
.+...+.+.. .+++-++++|+++... ......+...+.....+.++|+||.... +...+ ..++
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~------~~i~ 161 (324)
T 3u61_B 88 FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC------RVIT 161 (324)
T ss_dssp HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS------EEEE
T ss_pred HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC------cEEE
Confidence 3333333222 2367899999997655 4444455554443334678888887643 12211 4689
Q ss_pred cCCCChhcHHHH-------HHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHH
Q 038265 312 LQELPYKDCLSL-------FMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRT 359 (883)
Q Consensus 312 l~~L~~~~a~~l-------f~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 359 (883)
+++++.++-.++ +...+...+....+ .+....|++.++|.+..+..
T Consensus 162 ~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 162 FGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 999998874333 33333222222111 24567788889888765443
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.21 E-value=3.8e-05 Score=84.09 Aligned_cols=268 Identities=12% Similarity=0.190 Sum_probs=150.8
Q ss_pred cCCCCC-ceeEEeeccCCccchhhhhHHhhccCCcccEEEecCcc---cccccc-ccCCCCCceEecccCCccccccC-c
Q 038265 528 FLPDLG-RVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSA---IEVLPR-KMGNLRQLRHLDLSGNRKIKKLP-N 601 (883)
Q Consensus 528 ~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~ 601 (883)
.|.++. .|+++.++. ....+-..+|.+|.+|+.+.+..+. +..+.. .|..+.+|+.+.+..+ +..++ .
T Consensus 58 aF~~~~~~L~sI~iP~----svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~ 131 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD----TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSE 131 (394)
T ss_dssp TTTTCCSCCCEEEECT----TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTT
T ss_pred hccCCCCcCEEEEECC----CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhh
Confidence 455553 578887762 2233344568888899998887653 455543 4667778888777643 33333 3
Q ss_pred cccCCCcccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccc
Q 038265 602 SICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLR 681 (883)
Q Consensus 602 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 681 (883)
.+..+.+|+.+.+..+ ....-...+..+.+|+.+.+..+-...-...+. .++|+.+.+...- ...-...+..+.+|.
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALS 208 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccceeeEecccccc-ccceeEEEECCcc-cccccchhhhccccc
Confidence 4667788888887642 222223345667777777766543222222222 2455555553211 000011122222222
Q ss_pred eeeecc--------------------------c---------cCCCCC-cccCCCCCCccEEEeccCCCCccCCcccccc
Q 038265 682 SLVINS--------------------------C---------PRLISL-PPAMKYLSSLETLILLKCESLDLNLNMEMEE 725 (883)
Q Consensus 682 ~L~l~~--------------------------~---------~~~~~l-~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 725 (883)
...... + ..+..+ ...|..+.+|+.+.+.... ....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~------- 280 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIG------- 280 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEEC-------
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceec-------
Confidence 221110 0 001111 2356778888888875421 1110
Q ss_pred ccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCCCCCccEEeecCCCCCccC-CccCCCCccccccccccccccccCC
Q 038265 726 EGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGSSKTLQMLTIGDCPNFMAL-PRSLKDLEALENLLITSCPKLSSLP 804 (883)
Q Consensus 726 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~L~~c~~l~~lp 804 (883)
......+..|+.+.+. ..++.++...+ ..+.+|+.+.|..+ ++.+ ...+.+|.+|+.+.|-.+ +..+.
T Consensus 281 ----~~aF~~c~~L~~i~l~--~~i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~ 349 (394)
T 4gt6_A 281 ----TGAFMNCPALQDIEFS--SRITELPESVF-AGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIP 349 (394)
T ss_dssp ----TTTTTTCTTCCEEECC--TTCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCC
T ss_pred ----CcccccccccccccCC--CcccccCceee-cCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEh
Confidence 0112334577777775 35667776664 56789999999753 5555 346788999999999653 55565
Q ss_pred -CCCCCCCCcCeeeccCCcc
Q 038265 805 -EGMHHLTTLKTLAIEECPA 823 (883)
Q Consensus 805 -~~l~~l~~L~~L~l~~c~~ 823 (883)
..+.+|++|+.+++.++..
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHH
T ss_pred HhHhhCCCCCCEEEECCcee
Confidence 3578899999999988753
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.19 E-value=7e-06 Score=87.00 Aligned_cols=187 Identities=16% Similarity=0.094 Sum_probs=103.4
Q ss_pred CCccccchhhHHHHHHHHhcC------CCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C---cHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQT------SDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F---GKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~---~~~~~~~~i~~~~~ 232 (883)
-.+++|.++.++.+.+.+..+ ........+-|.++|++|+|||+||+++++.... | +...+. ....
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~----~~~~ 92 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV----SKWM 92 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH----TTTG
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh----hccc
Confidence 357999999999998877311 0011233467999999999999999999876421 1 111111 1000
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh-----------hhHHHHHHhcC---CCCCCCEEEEeecChHHH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP-----------RAWGELKSLLL---GGAEGSKILVTTRSNKVA 298 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~iivTtr~~~v~ 298 (883)
......+...+......++.+|+||+++.... .....+...+. ....+..||.||..+...
T Consensus 93 -----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 93 -----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQL 167 (322)
T ss_dssp -----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGS
T ss_pred -----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhC
Confidence 01111222222333345678999999964211 01223333332 233455566677653221
Q ss_pred H-HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCC-CchHHHHHHh
Q 038265 299 L-IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRG-IPLAVRTVGS 362 (883)
Q Consensus 299 ~-~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 362 (883)
. .... .....+.+...+.++-.++|...+........ ......|++.+.| .+-.|..+..
T Consensus 168 d~al~~-Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 168 DSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CHHHHH-HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CHHHHc-ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1 0000 11256788999999999999988743322111 2345778888887 4555555543
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.13 E-value=2.3e-05 Score=83.97 Aligned_cols=187 Identities=14% Similarity=0.074 Sum_probs=101.7
Q ss_pred CCccccchhhHHHHHHHHhcC---C---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC----CcHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQT---S---DGESETVSVIPIVGIGGLGKTALAKLVYNDQKD----FGKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~~~~~~~i~~~~~ 232 (883)
-.+++|.++.++.|.+.+..+ . .......+-|.++|++|+|||+||+++++.... .+...+.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~-------- 121 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-------- 121 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH--------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh--------
Confidence 356999999999998876311 0 001122356889999999999999999876521 1112111
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChh-----------hHHHHHHhcC---CCCCCCEEEEeecChHHH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPR-----------AWGELKSLLL---GGAEGSKILVTTRSNKVA 298 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~iivTtr~~~v~ 298 (883)
.. ............+......++.+|+||+++..... ....+...+. ....+..||.||..+...
T Consensus 122 ~~-~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~l 200 (355)
T 2qp9_X 122 SK-WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQL 200 (355)
T ss_dssp SC-C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGS
T ss_pred hh-hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccC
Confidence 11 11112222223333333457889999999643210 0122222222 123355566666644211
Q ss_pred H-HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCC-CchHHHHHHh
Q 038265 299 L-IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRG-IPLAVRTVGS 362 (883)
Q Consensus 299 ~-~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 362 (883)
. .... .....+.+...+.++-.+++............ ......|++.+.| .+-.|..+..
T Consensus 201 d~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 201 DSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHc-ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1 1100 12256789999999999999888743322111 2345778888888 4545555543
No 186
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.09 E-value=2.1e-05 Score=82.36 Aligned_cols=181 Identities=17% Similarity=0.133 Sum_probs=100.9
Q ss_pred CCccccchhhHHHHHHHHhcCC-------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC----CcHHHHHHHHHHHh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTS-------DGESETVSVIPIVGIGGLGKTALAKLVYNDQKD----FGKRQIMTKIINSV 231 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~~~~~~~i~~~~ 231 (883)
-.+++|.++.++++.+++..+. ..+-...+.|.|+|++|+|||+||+++++.... .+...+.. ..
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~----~~ 89 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT----MW 89 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH----HH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh----hh
Confidence 3569999999888887764310 000123457899999999999999999887521 12233332 22
Q ss_pred hCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC--------------hhhHHHHHHhcCC--CCCCCEEEEeecCh
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED--------------PRAWGELKSLLLG--GAEGSKILVTTRSN 295 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------------~~~~~~l~~~l~~--~~~gs~iivTtr~~ 295 (883)
.+.. .......+.......+.+|++|+++... ......+...+.. ...+..||.||..+
T Consensus 90 ~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 90 FGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred cCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 2221 1223333444444567899999995310 0012333333322 22355677777655
Q ss_pred HHHHH--HcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchH
Q 038265 296 KVALI--MGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLA 356 (883)
Q Consensus 296 ~v~~~--~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 356 (883)
..... .....-...+.+...+.++-.+++.............++ ..+++.+.|.|-+
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 32211 111112246889999999989998877743322211222 3455667776643
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.08 E-value=6.5e-05 Score=79.30 Aligned_cols=192 Identities=15% Similarity=0.082 Sum_probs=102.2
Q ss_pred CCccccchhhHHHHHHHHhcC------CCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQT------SDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (883)
-.+++|.++.++.|.+.+..+ -.+.....+-|.++|++|+|||+||+++++.........+- ...+. ...
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~---~~~l~-~~~ 86 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS---SSDLV-SKW 86 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE---CCSSC-CSS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE---hHHHH-hhh
Confidence 357999999988888766311 00111234688999999999999999998764111000000 00000 111
Q ss_pred CCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-------hhhH----HHHHHhcCC---CCCCCEEEEeecChHHHH-HH
Q 038265 237 GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-------PRAW----GELKSLLLG---GAEGSKILVTTRSNKVAL-IM 301 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-------~~~~----~~l~~~l~~---~~~gs~iivTtr~~~v~~-~~ 301 (883)
.......+...+...-..++.+|++|+++... .... .++...+.. ...+..||.||..+.... ..
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al 166 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHH
Confidence 11222333333333334678899999996421 0011 122222222 223445555665432111 11
Q ss_pred cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCC-chHHHHHHh
Q 038265 302 GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGI-PLAVRTVGS 362 (883)
Q Consensus 302 ~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 362 (883)
.. .-...+.+...+.++-.+++........... .......|++.+.|. +-.|..+..
T Consensus 167 ~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 167 RR-RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HH-TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred Hh-hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 00 1125678899999999999988773322211 123457888898887 444655554
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.07 E-value=3.8e-05 Score=81.48 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=86.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC----C---CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEe
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ----K---DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMD 262 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~----~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlD 262 (883)
....+.|+|++|+||||||+.+++.. . ..+...+...+...+... ... .+...+ .+.-+|++|
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~----~~~~~~-~~~~vL~iD 105 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG-----TIN----EFRNMY-KSVDLLLLD 105 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHT-----CHH----HHHHHH-HTCSEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcC-----cHH----HHHHHh-cCCCEEEEc
Confidence 34578999999999999999998754 1 123344444444433211 111 122222 236799999
Q ss_pred CCCCCCh--hhHHHHHHhcCC-CCCCCEEEEeecCh---------HHHHHHcccCCCCceecCCCChhcHHHHHHHHHhc
Q 038265 263 DVWNEDP--RAWGELKSLLLG-GAEGSKILVTTRSN---------KVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFK 330 (883)
Q Consensus 263 dv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~ 330 (883)
|++.... ...+.+...+.. ...|..||+||... .+...+... ..+++++ +.++..+++...+..
T Consensus 106 Ei~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~---~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 106 DVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG---ILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS---EEEECCC-CHHHHHHHHHHHHHH
T ss_pred CcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc---eEEEeCC-CHHHHHHHHHHHHHh
Confidence 9965432 112223332211 12356788888642 222233221 4689999 999999999988754
Q ss_pred CCCCCCcchHHHHHHHHHHhCCCchHH
Q 038265 331 EGKEKHPNLVKIGEKIMEKCRGIPLAV 357 (883)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~c~glPLai 357 (883)
.+...+ .+....|++.+ |..-.+
T Consensus 182 ~~~~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 182 FNLELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp TTCCCC---HHHHHHHHHHC-SSHHHH
T ss_pred cCCCCC---HHHHHHHHHhC-CCHHHH
Confidence 333222 24557788888 766543
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.05 E-value=2.2e-05 Score=82.83 Aligned_cols=163 Identities=12% Similarity=0.146 Sum_probs=87.5
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC--C-cHHHHHHHHHHHhh
Q 038265 165 DIIGRYEDGEKIIELLMQTS---------DGESETVSVIPIVGIGGLGKTALAKLVYNDQKD--F-GKRQIMTKIINSVI 232 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~-~~~~~~~~i~~~~~ 232 (883)
+++|.++.++.+.+.+.... -........+.|+|++|+|||++|+.+.+.... + ....+..--...+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 48898888888876653210 001133557899999999999999877654300 0 00000000000011
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC---------ChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcc
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE---------DPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGT 303 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 303 (883)
.. ............+... +.-+|+||+++.. .......+...+.....+..||.||...........
T Consensus 112 ~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~ 187 (309)
T 3syl_A 112 GQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQS 187 (309)
T ss_dssp CS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHH
T ss_pred hh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhh
Confidence 11 1111112222223222 3469999999733 333444555555555556778888864322111100
Q ss_pred c-----CCCCceecCCCChhcHHHHHHHHHhcC
Q 038265 304 M-----RGTTGYNLQELPYKDCLSLFMKCAFKE 331 (883)
Q Consensus 304 ~-----~~~~~~~l~~L~~~~a~~lf~~~a~~~ 331 (883)
. .....+.+.+++.++-.+++...+...
T Consensus 188 ~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 188 NPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp STTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 0 001568999999999999998887543
No 190
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=3.1e-06 Score=81.58 Aligned_cols=117 Identities=12% Similarity=0.092 Sum_probs=73.3
Q ss_pred hhhhHHhhccCCcccEEEecCc-ccc-----ccccccCCCCCceEecccCCcccc----ccCccccCCCcccEeecCCCC
Q 038265 549 QSFVTSCISKSKSLRVLVLMNS-AIE-----VLPRKMGNLRQLRHLDLSGNRKIK----KLPNSICELQSLQTLNLGDCL 618 (883)
Q Consensus 549 ~~~~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~L~~~~ 618 (883)
...+...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4445566777888888888888 764 345556677788888888886432 234445556778888888775
Q ss_pred CCcc----CCccccCCcccCEEEe--CCccccc-----cccccCCCCCCCeEEeecCC
Q 038265 619 ELEE----LPKDIRYLVSLRMFVV--TTKQKSL-----LESGIGCLSSLRFLMISDCG 665 (883)
Q Consensus 619 ~~~~----lp~~~~~l~~L~~L~l--~~~~~~~-----~~~~~~~l~~L~~L~l~~~~ 665 (883)
.... +...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5432 3445556666777777 5565542 22233444566666665543
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.01 E-value=1.3e-06 Score=84.46 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+++||+.+++.+.+.+.. ...+.+.|+|++|+|||++|+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999855 224467899999999999999987653
No 192
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.00 E-value=3.9e-05 Score=79.11 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=89.6
Q ss_pred CccccchhhHHHHHHH-------HhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCcHHHHHHHHHHHhhCCC
Q 038265 164 SDIIGRYEDGEKIIEL-------LMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~-------L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~~~~i~~~~~~~~ 235 (883)
..++|....++++... +... .....+.+.|+|++|+|||++|+.+++... .|-... ....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~---------~~~~ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC---------SPDK 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE---------CGGG
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe---------CHHH
Confidence 4578888777766652 3221 124567899999999999999999987531 100000 0000
Q ss_pred CCCCCh----HHHHHHHHHHcCCCceEEEEeCCCCC---------ChhhH-HHHHHhcCC---CCCCCEEEEeecChHHH
Q 038265 236 HGNLDP----DRMQKVLRDSLNGKRYLLVMDDVWNE---------DPRAW-GELKSLLLG---GAEGSKILVTTRSNKVA 298 (883)
Q Consensus 236 ~~~~~~----~~~~~~l~~~l~~kr~LlvlDdv~~~---------~~~~~-~~l~~~l~~---~~~gs~iivTtr~~~v~ 298 (883)
...... ..+...+......+..+|+||+++.. ....+ ..+...+.. ......||.||......
T Consensus 101 ~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 101 MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 001111 12223333444567889999998431 01112 223333322 22234466777776544
Q ss_pred HHHccc-CCCCceecCCCCh-hcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCC
Q 038265 299 LIMGTM-RGTTGYNLQELPY-KDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRG 352 (883)
Q Consensus 299 ~~~~~~-~~~~~~~l~~L~~-~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g 352 (883)
...... .-...+.+++++. ++..+++.... . .. .+....|++.+.|
T Consensus 181 ~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~--~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 181 QEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N--FK---DKERTTIAQQVKG 228 (272)
T ss_dssp HHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C--SC---HHHHHHHHHHHTT
T ss_pred chhhhhcccceEEcCCCccHHHHHHHHHHhcC---C--CC---HHHHHHHHHHhcC
Confidence 331111 1125678888887 55555554421 1 11 2445778888877
No 193
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.00 E-value=4.4e-05 Score=82.03 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=101.5
Q ss_pred CCccccchhhHHHHHHHHhcC---CC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C---cHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQT---SD---GESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F---GKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~---~~~~~~~~i~~~~~ 232 (883)
-.+++|.+..++.+.+.+..+ .. ......+.|.|+|++|+|||++|+++++.... | +.. .+.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~--------~l~ 154 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS--------SLT 154 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG--------GGC
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH--------Hhh
Confidence 356999999999998877421 00 00123567999999999999999999876521 0 000 000
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-----------hhhHHHHHHhcCC----CCCCCEEEEeecChHH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLLG----GAEGSKILVTTRSNKV 297 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs~iivTtr~~~v 297 (883)
.. ............+......++.+|+||+++... ......+...+.. ...+..||.||.....
T Consensus 155 ~~-~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 155 SK-WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp CS-STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred cc-ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 00 000011111122222223567899999984210 0111223333322 1234455556654321
Q ss_pred H-HHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCC-CchHHHHHHhh
Q 038265 298 A-LIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRG-IPLAVRTVGSL 363 (883)
Q Consensus 298 ~-~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~ 363 (883)
. ..... .....+.+...+.++..+++...+...+.... .+....|++.+.| .+-.|..+...
T Consensus 234 l~~~l~~-Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 234 IDEAARR-RLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp BCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCHHHHh-hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1 11111 11246788999999999999887743322211 2456778888888 55566665543
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=5.8e-05 Score=80.64 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=104.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC-CCCCChH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN-HGNLDPD 242 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 242 (883)
.+++|.+..++.+...+... +..-+.++|++|+||||+|+.+.+........ ..+..-. ......+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~-------~~~~~~~~~~~~~~~ 91 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYS-------NMVLELNASDDRGID 91 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH-------HHEEEECTTSCCSHH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCcc-------ceEEEEcCcccccHH
Confidence 45889988888888887652 22238999999999999999987653111100 0111101 0111233
Q ss_pred HHHHHHHHHc------CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCceecCCC
Q 038265 243 RMQKVLRDSL------NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTGYNLQEL 315 (883)
Q Consensus 243 ~~~~~l~~~l------~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~~~l~~L 315 (883)
...+.+.... .+.+-++|+|+++.........+...+......+++|++|.... +...... .+..+.+.++
T Consensus 92 ~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s--R~~~~~~~~l 169 (340)
T 1sxj_C 92 VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS--QCTRFRFQPL 169 (340)
T ss_dssp HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCC
T ss_pred HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh--hceeEeccCC
Confidence 3333333222 23467899999976655555556555544445667777776532 1111111 1246889999
Q ss_pred ChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHH
Q 038265 316 PYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVR 358 (883)
Q Consensus 316 ~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 358 (883)
+.++..+.+...+...+.... .+..+.|++.++|.+--+.
T Consensus 170 ~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 170 PQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp CHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 999998888877633322222 2456788899999886443
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.96 E-value=8e-05 Score=77.90 Aligned_cols=185 Identities=16% Similarity=0.143 Sum_probs=99.3
Q ss_pred CCccccchhhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-CcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTS------DGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-FGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~~~~i~~~~~~~~ 235 (883)
-.+++|.+..++.+.+.+..+. .+-....+.|.|+|++|+||||+|+.+++.... |-... ...+.. .
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~-----~~~l~~-~ 93 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNIS-----AASLTS-K 93 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE-----STTTSS-S
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee-----HHHHhh-c
Confidence 3569999999999988763310 000122467899999999999999999876521 00000 000000 0
Q ss_pred CCCCChHHHHH-HHHHHcCCCceEEEEeCCCCCCh-----------hhHHHHHH---hcCCC--CCCCEEEEeecChH--
Q 038265 236 HGNLDPDRMQK-VLRDSLNGKRYLLVMDDVWNEDP-----------RAWGELKS---LLLGG--AEGSKILVTTRSNK-- 296 (883)
Q Consensus 236 ~~~~~~~~~~~-~l~~~l~~kr~LlvlDdv~~~~~-----------~~~~~l~~---~l~~~--~~gs~iivTtr~~~-- 296 (883)
.. ........ .+......++.+|++|+++.... .....+.. .++.. +.+..||.||..+.
T Consensus 94 ~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 94 YV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp SC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred cc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 01 11222222 22233345678999999954311 00111221 12221 12445666776532
Q ss_pred ---HHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch-HHHHHHh
Q 038265 297 ---VALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL-AVRTVGS 362 (883)
Q Consensus 297 ---v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 362 (883)
+...+ ...+.+...+.++..+++...+...+.... .+....+++.+.|.+- ++..+..
T Consensus 173 ~~~l~~R~-----~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 173 DEAALRRF-----TKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp CHHHHHHC-----CEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHhhC-----CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 22211 146778888888888888877643322111 2445778889999875 5555443
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=4.5e-05 Score=84.39 Aligned_cols=188 Identities=16% Similarity=0.135 Sum_probs=100.7
Q ss_pred CCccccchhhHHHHHHHHhcC---C---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC--C---cHHHHHHHHHHHh
Q 038265 163 TSDIIGRYEDGEKIIELLMQT---S---DGESETVSVIPIVGIGGLGKTALAKLVYNDQKD--F---GKRQIMTKIINSV 231 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~---~~~~~~~~i~~~~ 231 (883)
-.+++|.++.++.+.+.+..+ . .+.....+-|.++|++|+|||+||+++++.... | +...+... .
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~----~ 208 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK----W 208 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh----h
Confidence 467999999999988876311 0 001123467899999999999999999886511 1 11111111 1
Q ss_pred hCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh-------hhH----HHHHHhcCC---CCCCCEEEEeecChHH
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP-------RAW----GELKSLLLG---GAEGSKILVTTRSNKV 297 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-------~~~----~~l~~~l~~---~~~gs~iivTtr~~~v 297 (883)
.+.. . ..+...+...-..++.+|+||+++.... ... ..+...+.. ...+..||.||..+..
T Consensus 209 ~g~~--~---~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 209 LGES--E---KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp ---C--C---CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred cchH--H---HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 1111 1 1122222222235678999999975310 011 122222222 2345566667765432
Q ss_pred HHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCC-chHHHHHHh
Q 038265 298 ALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGI-PLAVRTVGS 362 (883)
Q Consensus 298 ~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 362 (883)
....-.......+.+...+.++..++|...+........ ......|++.+.|. +-.|..+..
T Consensus 284 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 284 LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 111100111246788888888888999887743221111 23456788888884 545555443
No 197
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=0.00046 Score=75.35 Aligned_cols=281 Identities=12% Similarity=0.131 Sum_probs=164.5
Q ss_pred HHhhccCC-cccEEEecCccccccc-cccCCCCCceEecccCCc--cccccC-ccccCCCcccEeecCCCCCCccCC-cc
Q 038265 553 TSCISKSK-SLRVLVLMNSAIEVLP-RKMGNLRQLRHLDLSGNR--KIKKLP-NSICELQSLQTLNLGDCLELEELP-KD 626 (883)
Q Consensus 553 ~~~~~~~~-~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~--~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~ 626 (883)
..+|.+++ .|+.+.+..+ ++.+. ..|.+|.+|+.+.+..+. .+..+. ..|..+.+|+.+.+..+ +..++ ..
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhh
Confidence 34577774 5999999754 66664 457889999999987642 234443 45677889998888642 33333 46
Q ss_pred ccCCcccCEEEeCCccccccccccCCCCCCCeEEeecCCCccccccccccCcccceeeeccccCCCCCcccCCCCCCccE
Q 038265 627 IRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISDCGNLEYLFEDIDQLSVLRSLVINSCPRLISLPPAMKYLSSLET 706 (883)
Q Consensus 627 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 706 (883)
+..+.+|+.+.+..+........+..+.+|+.+.+..+ +..+....-...+|+.+.+.... ...-...+..+.+|..
T Consensus 133 F~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALST 209 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCE
T ss_pred hhhhcccccccccceeeeecccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhhhccccce
Confidence 78899999999987655555567888899999988652 34443322234678888885432 1222345667777777
Q ss_pred EEeccCCCCccCCccccc-------------------------cccCCCCCCCCCCCcceEEeccCCCCccchhhhhcCC
Q 038265 707 LILLKCESLDLNLNMEME-------------------------EEGSHHDCNNVRSHLRTLCVAELTQLLELPQWLLQGS 761 (883)
Q Consensus 707 L~L~~~~~l~~~~~~~~~-------------------------~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 761 (883)
.................. ...........+..|+.+.+.. .+..+....+ ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~--~~~~I~~~aF-~~ 286 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPD--SVVSIGTGAF-MN 286 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCT--TCCEECTTTT-TT
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccc--ccceecCccc-cc
Confidence 665432211111000000 0000001112233455555432 2233333332 45
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCCccccccccccccccccCC-CCCCCCCCcCeeeccCCcchhhhhCCCCCCCCCcc
Q 038265 762 SKTLQMLTIGDCPNFMALP-RSLKDLEALENLLITSCPKLSSLP-EGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKI 839 (883)
Q Consensus 762 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 839 (883)
+++|+.+.+.. .+..++ ..+.++.+|+.+.|..+ ++.+. ..+.+|++|+.+.|-.+ ........+...
T Consensus 287 c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s------v~~I~~~aF~~C 356 (394)
T 4gt6_A 287 CPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS------VTKIPESAFSNC 356 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT------CCBCCGGGGTTC
T ss_pred ccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc------cCEEhHhHhhCC
Confidence 67777777753 344444 35677888888888653 44444 35778888888888542 122223345666
Q ss_pred CCCCeeeeCCCcc
Q 038265 840 AHIPQIDLDGEMI 852 (883)
Q Consensus 840 ~~l~~l~l~~n~i 852 (883)
..|..+++.++..
T Consensus 357 ~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 357 TALNNIEYSGSRS 369 (394)
T ss_dssp TTCCEEEESSCHH
T ss_pred CCCCEEEECCcee
Confidence 7888888887654
No 198
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.92 E-value=0.00015 Score=77.00 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhh------CCC
Q 038265 170 YEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVI------GGN 235 (883)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~------~~~ 235 (883)
++..+.+...+... .-.+.+.++|++|+|||++|+.+.+... .++.......+..... ...
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 44456666666442 2346799999999999999998876531 1111111122221110 000
Q ss_pred --CCCCChHHHHHHHHHHc-----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCC
Q 038265 236 --HGNLDPDRMQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGT 307 (883)
Q Consensus 236 --~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~ 307 (883)
......+...+. .+.+ .+++-++|+|+++.........+...+.....++.+|++|.++. +..... ..+
T Consensus 83 ~~~~~~~i~~ir~l-~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~--SRc 159 (334)
T 1a5t_A 83 KGKNTLGVDAVREV-TEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR--SRC 159 (334)
T ss_dssp TTCSSBCHHHHHHH-HHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH--TTS
T ss_pred ccCCCCCHHHHHHH-HHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh--hcc
Confidence 112334444333 3333 24678999999987666566667777766556778888877653 222221 123
Q ss_pred CceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 308 TGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 308 ~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
..+.+.++++++..+.+.... . .. .+.+..+++.++|.|..+..+
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~---~--~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV---T--MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC---C--CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred eeeeCCCCCHHHHHHHHHHhc---C--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 679999999999999888765 1 11 244577899999999766544
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.86 E-value=0.00022 Score=77.60 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=98.7
Q ss_pred CCccccchhhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C---cHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTS------DGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F---GKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~---~~~~~~~~i~~~~~ 232 (883)
-.+++|.+..++.+.+++.... .......+-|.|+|++|+|||++|+++++.... | +...+..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~------- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS------- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---------
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc-------
Confidence 4579999999999988773210 000122467899999999999999999776410 0 0000000
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC-----------hhhHHHHHHhcC---C-CCCCCEEEEeecChHH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLL---G-GAEGSKILVTTRSNKV 297 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~l~~~l~---~-~~~gs~iivTtr~~~v 297 (883)
.............+......+..+|+||+++... ......+...+. . ......||.||.....
T Consensus 187 --~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 187 --KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred --cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 0000111222222233333456799999995320 001111222221 1 1223455556654322
Q ss_pred HH-HHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCch-HHHHHHh
Q 038265 298 AL-IMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPL-AVRTVGS 362 (883)
Q Consensus 298 ~~-~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 362 (883)
.. .... .....+.+...+.++..+++...+...+... ..+....|++.+.|..- +|..+..
T Consensus 265 l~~~l~~-R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 265 LDEAVLR-RFIKRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCHHHHc-CcceEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 11 1111 1124588899999999999988874432221 22455788888888554 5555543
No 200
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=3.6e-05 Score=73.76 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=53.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCC--------CCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEEe
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQK--------DFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVMD 262 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlD 262 (883)
...++|+|++|+||||||+.+++... .++...+...+.......... .....+ . +.-+||||
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~-~~~llilD 107 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDT-----KFLKTV----L-NSPVLVLD 107 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCS-----HHHHHH----H-TCSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHH-----HHHHHh----c-CCCEEEEe
Confidence 56899999999999999999876531 123445554444333221111 111221 1 45689999
Q ss_pred CCCCCChhhHH--HHHHhcCCC-CCCCEEEEeecC
Q 038265 263 DVWNEDPRAWG--ELKSLLLGG-AEGSKILVTTRS 294 (883)
Q Consensus 263 dv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 294 (883)
|++......|. .+...+... ..|..||+||..
T Consensus 108 E~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 108 DLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99743333333 233323221 246788888864
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.82 E-value=2.6e-05 Score=71.64 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=66.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHH
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRM 244 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 244 (883)
+++|+...+.++.+.+.... ....-|.|+|.+|+|||++|+.+++.....+.. ++ +........ ...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~-----~v--~~~~~~~~~--~~~ 68 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE-----FV--YRELTPDNA--PQL 68 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC-----CE--EEECCTTTS--SCH
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC-----EE--EECCCCCcc--hhh
Confidence 58999999999998875432 112347899999999999999998864211000 00 000000000 111
Q ss_pred HHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecC
Q 038265 245 QKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS 294 (883)
Q Consensus 245 ~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 294 (883)
...+... +.-.|+||+++......-..+...+.......+||.||..
T Consensus 69 ~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 69 NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1122221 3357899999877655555666666544456678887764
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=2e-05 Score=73.86 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=18.4
Q ss_pred ccceeeeccccCCCCCcccCCCCCCccEEEeccCCCCc
Q 038265 679 VLRSLVINSCPRLISLPPAMKYLSSLETLILLKCESLD 716 (883)
Q Consensus 679 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~ 716 (883)
+|+.|++++|.....-...+..+++|++|+|++|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 45555555554322222234455556666666655443
No 203
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.77 E-value=0.0021 Score=69.60 Aligned_cols=124 Identities=11% Similarity=0.147 Sum_probs=61.1
Q ss_pred CCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccc-cCCCCCceEecccCCccccccCccccCCCc
Q 038265 530 PDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRK-MGNLRQLRHLDLSGNRKIKKLPNSICELQS 608 (883)
Q Consensus 530 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 608 (883)
....+++++.+. .....+...+|.+|.+|+.+.+..+ +..++.. |.++ +|+.+.+..+ +..++.......+
T Consensus 43 ~~~~~i~~v~ip----~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~ 114 (379)
T 4h09_A 43 KDRDRISEVRVN----SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTD 114 (379)
T ss_dssp GGGGGCSEEEEC----TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCC
T ss_pred ccccCCEEEEeC----CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCC
Confidence 345566776665 1223333456777788888877643 5555433 4444 5666655432 4444433333346
Q ss_pred ccEeecCCCCCCccCCccccCCcccCEEEeCCccccccccccCCCCCCCeEEeec
Q 038265 609 LQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISD 663 (883)
Q Consensus 609 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 663 (883)
|+.+.+..+ ...+........+|..+.+..+-.......+..+.+++.+.+..
T Consensus 115 L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 115 LDDFEFPGA--TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CSEEECCTT--CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECT
T ss_pred cccccCCCc--cccccccccccceeeeeeccceeeccccchhccccccccccccc
Confidence 777777542 22222222222345555554433222233445555565555543
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=1.6e-05 Score=76.52 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=88.2
Q ss_pred cccCCCCCceeEEeeccC-Ccc-chhhhhHHhhccCCcccEEEecCccccc-----cccccCCCCCceEecccCCcccc-
Q 038265 526 ASFLPDLGRVRTIMLPID-DER-TSQSFVTSCISKSKSLRVLVLMNSAIEV-----LPRKMGNLRQLRHLDLSGNRKIK- 597 (883)
Q Consensus 526 ~~~~~~~~~l~~l~l~~~-~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~- 597 (883)
...+...+.|+.|.+..+ ... .....+...+...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667889999999754 333 1233455667788999999999999863 45556667889999999997543
Q ss_pred ---ccCccccCCCcccEeec--CCCCCCcc----CCccccCCcccCEEEeCCcccc
Q 038265 598 ---KLPNSICELQSLQTLNL--GDCLELEE----LPKDIRYLVSLRMFVVTTKQKS 644 (883)
Q Consensus 598 ---~lp~~~~~l~~L~~L~L--~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~ 644 (883)
.+...+...++|++|+| ++|..... +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 25666778899999999 76665433 4455667789999999999875
No 205
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=2.8e-05 Score=72.86 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=19.2
Q ss_pred CceEecccCCccccccCccccCCCcccEeecCCCCCC
Q 038265 584 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLEL 620 (883)
Q Consensus 584 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 620 (883)
+|+.||+++|.....--..+..+++|++|+|++|..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 4556666655533322233455666666666666543
No 206
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.69 E-value=1.9e-05 Score=72.46 Aligned_cols=111 Identities=9% Similarity=0.062 Sum_probs=61.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDR 243 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 243 (883)
-+++|++..++++.+.+.... ....-|.|+|.+|+|||++|+.+++...+| ..-...... +.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------------~~~~~~~~~-~~ 65 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGTPW-------------VSPARVEYL-ID 65 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTSCE-------------ECCSSTTHH-HH
T ss_pred cCceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCCCe-------------EEechhhCC-hH
Confidence 358999999999888875421 112347899999999999999998764311 000000000 00
Q ss_pred HHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCC-CCCCEEEEeecC
Q 038265 244 MQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-AEGSKILVTTRS 294 (883)
Q Consensus 244 ~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 294 (883)
....+.+. .+.-.++||+++......-..+...+... ..+.+||.||..
T Consensus 66 ~~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 66 MPMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp CHHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred hhhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 01111121 22457899999876654444455444332 345678887763
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00041 Score=73.87 Aligned_cols=181 Identities=16% Similarity=0.101 Sum_probs=98.2
Q ss_pred CCccccchhhHHHHHHHHhcCC---C----CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C-cHHHHHHHHHHHhhC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTS---D----GESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F-GKRQIMTKIINSVIG 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~---~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~-~~~~~~~~i~~~~~~ 233 (883)
-+++.|.++.+++|.+.+.-+- + -+-...+-|.++|++|.|||.||+++++.... | ... ...+.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~------~s~l~- 219 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS------GAELV- 219 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE------GGGGS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE------hHHhh-
Confidence 4678899998888877653210 0 01133567899999999999999999876411 0 000 00000
Q ss_pred CCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh--------h--h----HHHHHHhcCC--CCCCCEEEEeecChHH
Q 038265 234 GNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP--------R--A----WGELKSLLLG--GAEGSKILVTTRSNKV 297 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~--------~--~----~~~l~~~l~~--~~~gs~iivTtr~~~v 297 (883)
..+...+...+...+...-...+++|++|+++.... . . ..++...+.+ ...+-.||.||..++.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 111111122222223333346789999999975210 0 1 1122222332 2234455667765433
Q ss_pred HHH--HcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 298 ALI--MGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 298 ~~~--~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
... .....-+..+.++..+.++-.++|..+..+......-++ ..|++.+.|.-
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 221 111223468999999999999999887743322222233 56777777754
No 208
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.62 E-value=0.00024 Score=74.24 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
++++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999988876532 122357899999999999999998743
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.61 E-value=0.0001 Score=82.02 Aligned_cols=184 Identities=16% Similarity=0.158 Sum_probs=100.2
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C---cHHHHHHHHHHHhh
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F---GKRQIMTKIINSVI 232 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~---~~~~~~~~i~~~~~ 232 (883)
.+++|.+..++++.+++..... -+....+-|.|+|++|+|||++|+++++.... | +...+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~-------- 275 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-------- 275 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH--------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh--------
Confidence 4689999999999887753200 00123456899999999999999999876521 1 111111
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC--------Ch---hhHHHHHHhcCC--CCCCCEEEEeecChHHH-
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE--------DP---RAWGELKSLLLG--GAEGSKILVTTRSNKVA- 298 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~--------~~---~~~~~l~~~l~~--~~~gs~iivTtr~~~v~- 298 (883)
.. ............+.....+++.+|+||+++.. .. .....+...+.. ...+.+||.||......
T Consensus 276 ~~-~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 276 SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp TS-CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred hh-hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 11 11111222333444444567789999998321 10 111223333321 22344566666654321
Q ss_pred HHHcc-cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCC-chHHHHH
Q 038265 299 LIMGT-MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGI-PLAVRTV 360 (883)
Q Consensus 299 ~~~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 360 (883)
..... ......+.+...+.++-.++|..++..........+ .++++.+.|. +-.+..+
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 11111 111246889999999999999988743222222223 4566677664 4444444
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=1.8e-05 Score=80.24 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=41.3
Q ss_pred hccCCcccEEEecCccccccc---cccCCCCCceEecccCCccccccCccccCCC--cccEeecCCCCCCccCC
Q 038265 556 ISKSKSLRVLVLMNSAIEVLP---RKMGNLRQLRHLDLSGNRKIKKLPNSICELQ--SLQTLNLGDCLELEELP 624 (883)
Q Consensus 556 ~~~~~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~L~~~~~~~~lp 624 (883)
..++++|+.|+|++|.+..++ ..+..+++|++|+|++|. +..+. .+..+. +|++|+|++|...+.+|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 355777777777777776543 445567777777777776 33332 233333 67777777766555444
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.57 E-value=5.2e-05 Score=77.87 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=34.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|.+..+.++.+.+.... .....|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 458999999998887765422 112467899999999999999998765
No 212
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.57 E-value=3e-05 Score=75.96 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=61.1
Q ss_pred Cccccchh----hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC----C---CcHHHHHHHHHHHhh
Q 038265 164 SDIIGRYE----DGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK----D---FGKRQIMTKIINSVI 232 (883)
Q Consensus 164 ~~~vGr~~----~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~---~~~~~~~~~i~~~~~ 232 (883)
++|++... .++.+..++..... ....+.+.|+|++|+|||+||+.+++... . .....+...+.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQ 102 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC--
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhc
Confidence 45666543 34445555544221 11226889999999999999999987541 1 233444444433221
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHH--HHH-hcCCC-CCCCEEEEeecCh
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGE--LKS-LLLGG-AEGSKILVTTRSN 295 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~~ 295 (883)
. .........+.+ .-+|||||++......|.+ +.. .+... ..+.++|+||...
T Consensus 103 ~-----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 103 D-----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ------CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred c-----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 1 112222232222 2399999997644333322 221 12111 2355788888753
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.54 E-value=2.3e-05 Score=80.75 Aligned_cols=158 Identities=17% Similarity=0.206 Sum_probs=80.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCC------CCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CC---cHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDG------ESETVSVIPIVGIGGLGKTALAKLVYNDQK-DF---GKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~---~~~~~~~~i~~~~~ 232 (883)
-.+++|.++.++.+.+.+..-... .....+-|.|+|++|+|||++|+.+++... +| +...+ .....
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~----~~~~~ 85 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF----IEMFV 85 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT----TTSCS
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH----HHhhc
Confidence 457999998888887765410000 001123378999999999999999987541 00 00000 00000
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChh---------------hHHHHHHhcCCC---CCCCEEEEeecC
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPR---------------AWGELKSLLLGG---AEGSKILVTTRS 294 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~---------------~~~~l~~~l~~~---~~gs~iivTtr~ 294 (883)
+.. .......+......+..+|+||+++..... ....+...+... .....||.||..
T Consensus 86 ~~~-----~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 160 (268)
T 2r62_A 86 GLG-----ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNR 160 (268)
T ss_dssp SSC-----SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSC
T ss_pred chH-----HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCC
Confidence 100 001111222222346689999999543110 111222222211 122456667765
Q ss_pred hHHHH-H-HcccCCCCceecCCCChhcHHHHHHHHHh
Q 038265 295 NKVAL-I-MGTMRGTTGYNLQELPYKDCLSLFMKCAF 329 (883)
Q Consensus 295 ~~v~~-~-~~~~~~~~~~~l~~L~~~~a~~lf~~~a~ 329 (883)
..... . .........+.+...+.++-.+++...+.
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 53221 1 11111125678889999999999887763
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=1.7e-05 Score=80.31 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=45.7
Q ss_pred cCCCcccEeecCCCCCCc--cCCccccCCcccCEEEeCCccccccccccCCCC--CCCeEEeecCCCccccc-------c
Q 038265 604 CELQSLQTLNLGDCLELE--ELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLS--SLRFLMISDCGNLEYLF-------E 672 (883)
Q Consensus 604 ~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~-------~ 672 (883)
.++++|++|+|++|...+ .+|..+..+++|+.|+|++|.+..+ ..+..+. +|++|++++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 356777777777765544 4455556677777777777766644 2233333 66666666665443332 1
Q ss_pred ccccCcccceee
Q 038265 673 DIDQLSVLRSLV 684 (883)
Q Consensus 673 ~l~~l~~L~~L~ 684 (883)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 234555555554
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00061 Score=73.88 Aligned_cols=182 Identities=16% Similarity=0.092 Sum_probs=98.3
Q ss_pred CCccccchhhHHHHHHHHhcCC---C----CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-CcHHHHHHHHHHHhhCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTS---D----GESETVSVIPIVGIGGLGKTALAKLVYNDQKD-FGKRQIMTKIINSVIGG 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~---~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~~~~i~~~~~~~ 234 (883)
-+++.|.++.+++|.+.+.-+- + .+-...+-|.++|++|.|||+||+++++.... |-.. -...+. .
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v-----~~s~l~-s 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS-----PASGIV-D 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE-----EGGGTC-C
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE-----ehhhhc-c
Confidence 4578899988888877653210 0 01234578999999999999999999876421 0000 000000 0
Q ss_pred CCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC----------hh----hHHHHHHhcCC--CCCCCEEEEeecChHHH
Q 038265 235 NHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED----------PR----AWGELKSLLLG--GAEGSKILVTTRSNKVA 298 (883)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~----~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 298 (883)
.+.......+...+...-...+++|++|+++... .. ....+...+.+ ...+..||.||..++..
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 1111111122222233334678999999997421 00 11223333322 23355677777765443
Q ss_pred HHHcccC--CCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 299 LIMGTMR--GTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 299 ~~~~~~~--~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
...-..+ -...+.++..+.++-.++|..+..+......-++ ..+++.+.|.-
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 2211111 1246788888888888899877744332222233 46677777754
No 216
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.50 E-value=0.0073 Score=65.31 Aligned_cols=263 Identities=13% Similarity=0.105 Sum_probs=139.7
Q ss_pred ccCCCCCceeEEeeccCCccchhhhhHHhhccCCcccEEEecCccccccccccCCCCCceEecccCCccccccCccccCC
Q 038265 527 SFLPDLGRVRTIMLPIDDERTSQSFVTSCISKSKSLRVLVLMNSAIEVLPRKMGNLRQLRHLDLSGNRKIKKLPNSICEL 606 (883)
Q Consensus 527 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 606 (883)
..|.+|.+|+.+.+... ...+...+|.++ .|..+.+.. .+..++...-...+|+.+.+..+ +..+.......
T Consensus 63 ~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~~F~~ 134 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA--TTEIGNYIFYN 134 (379)
T ss_dssp TTTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCTT--CCEECTTTTTT
T ss_pred HHhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCCc--ccccccccccc
Confidence 45788999999998622 223334456666 577777654 35555544333347888888753 33333332223
Q ss_pred CcccEeecCCCCCCccCCccccCCcccCEEEeCCcccccc-------------ccccCCCCCCCeEEeecCCCccccccc
Q 038265 607 QSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL-------------ESGIGCLSSLRFLMISDCGNLEYLFED 673 (883)
Q Consensus 607 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~~~~~~~~ 673 (883)
.+|+.+.+..+ ....-...+..+.+|....+..+..... ...+....++..+.+.... .......
T Consensus 135 ~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 212 (379)
T 4h09_A 135 SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYG 212 (379)
T ss_dssp CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTT
T ss_pred ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecc
Confidence 35666665432 2222234556677777777665432211 1122333344444433211 1111233
Q ss_pred cccCcccceeeeccccCCCCC-cccCCCCCCccEEEeccCCCCccCCccccccccCCCCCCCCCCCcceEEeccCCCCcc
Q 038265 674 IDQLSVLRSLVINSCPRLISL-PPAMKYLSSLETLILLKCESLDLNLNMEMEEEGSHHDCNNVRSHLRTLCVAELTQLLE 752 (883)
Q Consensus 674 l~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 752 (883)
+..+.+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++... ......+.+|+.+.+.. .+..
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~----------~~aF~~~~~l~~i~l~~--~i~~ 276 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIG----------SFLLQNCTALKTLNFYA--KVKT 276 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEEC----------TTTTTTCTTCCEEEECC--CCSE
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeC----------ccccceeehhccccccc--ccee
Confidence 445666776666432 2222 234566777777776542 11110 01122334566666643 3555
Q ss_pred chhhhhcCCCCCccEEeecCCCCCccC-CccCCCCccccccccccccccccCC-CCCCCCCCcCeeecc
Q 038265 753 LPQWLLQGSSKTLQMLTIGDCPNFMAL-PRSLKDLEALENLLITSCPKLSSLP-EGMHHLTTLKTLAIE 819 (883)
Q Consensus 753 l~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~ 819 (883)
++...+ ..+.+|+.+.+.++. ++.+ ...+.++.+|+.+.|..+ ++.+. ..+.+|++|+.+.+.
T Consensus 277 i~~~aF-~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 277 VPYLLC-SGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECTTTT-TTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccc-ccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 555443 567788888887653 3333 345677888888887542 45554 346777888877774
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00072 Score=73.00 Aligned_cols=183 Identities=17% Similarity=0.098 Sum_probs=96.8
Q ss_pred CCccccchhhHHHHHHHHhcC---C----CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQT---S----DGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~---~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
-.++.|.++.+++|.+.+.-+ . .-+-...+-|.++|++|.|||+||+++++.....-.. --...+. ..
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~----vs~s~L~-sk 282 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR----VIGSELV-QK 282 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE----EEGGGGC-CC
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE----EEhHHhh-cc
Confidence 357889999888887764211 0 0011346788999999999999999998764210000 0000011 11
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh------h--------hHHHHHHhcCC--CCCCCEEEEeecChHHHH
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP------R--------AWGELKSLLLG--GAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~------~--------~~~~l~~~l~~--~~~gs~iivTtr~~~v~~ 299 (883)
........+...+...-...+++|++|+++.... . ....+...+.. ...+-.||.||..++...
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD 362 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD 362 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC
Confidence 1111122222333333346789999999964210 0 01112222222 223434566665443222
Q ss_pred H--HcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 300 I--MGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 300 ~--~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
. .....-...+.+...+.++-.++|..+...-.....-++ ..|++.+.|.-
T Consensus 363 pALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 363 PALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp HHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred hhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 1 111122367889999999999999887743322222233 45777777753
No 218
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.48 E-value=0.00045 Score=76.90 Aligned_cols=143 Identities=20% Similarity=0.225 Sum_probs=77.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-----------CC-cHHHHHHHHHHHh
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK-----------DF-GKRQIMTKIINSV 231 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-----------~~-~~~~~~~~i~~~~ 231 (883)
+.+|||+++++++...+... ...-+.++|++|+|||++|+.++.... .+ ....- ...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~ 248 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKY 248 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccc
Confidence 46999999999999998652 123467999999999999999876530 00 00000 000
Q ss_pred hCCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcc----cCCC
Q 038265 232 IGGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGT----MRGT 307 (883)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~----~~~~ 307 (883)
.+. ....+...+...-..++.+|++|.- .+ ....+...+.. ...++|.+|........... ....
T Consensus 249 ~g~-----~e~~~~~~~~~~~~~~~~iLfiD~~--~~--a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf 317 (468)
T 3pxg_A 249 RGE-----FEDRLKKVMDEIRQAGNIILFIDAA--ID--ASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRF 317 (468)
T ss_dssp ---------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred cch-----HHHHHHHHHHHHHhcCCeEEEEeCc--hh--HHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhC
Confidence 000 0112233334444467889999921 11 11122222221 23456655554432111100 0011
Q ss_pred CceecCCCChhcHHHHHHHHH
Q 038265 308 TGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 308 ~~~~l~~L~~~~a~~lf~~~a 328 (883)
..+.+.+++.++..+++...+
T Consensus 318 ~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 318 QPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp EEEECCCCCHHHHHHHHHHTT
T ss_pred ccceeCCCCHHHHHHHHHHHH
Confidence 468999999999999998765
No 219
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.48 E-value=7.1e-05 Score=90.24 Aligned_cols=151 Identities=18% Similarity=0.231 Sum_probs=79.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC---------CC-----cHHHHHHHHH
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQK---------DF-----GKRQIMTKII 228 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------~~-----~~~~~~~~i~ 228 (883)
-+.+|||++++.++.+.+... ...-+.++|++|+||||+|+.+.+... .. +...+..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred CcccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---
Confidence 356999999999999998652 233468999999999999999876530 00 0111100
Q ss_pred HHhhCCCCCCCChHHHHHHHHHHcC-CCceEEEEeCCCCCC--------hhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 229 NSVIGGNHGNLDPDRMQKVLRDSLN-GKRYLLVMDDVWNED--------PRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
+..........+...+...-. +++.+|++|+++... ......+...+.. .+..+|.+|.......
T Consensus 240 ----g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 240 ----GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYRE 313 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHH
T ss_pred ----cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhh
Confidence 000111111222233333333 367899999996532 1111123333322 2345665555443221
Q ss_pred H---HcccCCCCceecCCCChhcHHHHHHHHH
Q 038265 300 I---MGTMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 300 ~---~~~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
. .........+.+.+++.++..+++....
T Consensus 314 ~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 314 IEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 0111112458999999999999987543
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.47 E-value=0.0011 Score=70.23 Aligned_cols=178 Identities=20% Similarity=0.202 Sum_probs=95.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-CcHHHHHHHHHHHhhCCCCCCCChH
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKD-FGKRQIMTKIINSVIGGNHGNLDPD 242 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (883)
.+++|.+..++.+...+.... ..+.....+.++|++|+||||||+.+.+.... +. ...+. ......
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~-~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----------~~sg~--~~~~~~ 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAK-MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----------VTSGP--VLVKQG 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHH-HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----------EEETT--TCCSHH
T ss_pred HHccCcHHHHHHHHHHHHHHH-hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----------EEech--HhcCHH
Confidence 458898877777766654310 00123457899999999999999999765310 00 00010 011122
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCC------------------CCCEEE-EeecChHHHHHHcc
Q 038265 243 RMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA------------------EGSKIL-VTTRSNKVALIMGT 303 (883)
Q Consensus 243 ~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii-vTtr~~~v~~~~~~ 303 (883)
++...+ ..+ .++-++++|++........+.+...+.... +...++ .|++...+......
T Consensus 92 ~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s 169 (334)
T 1in4_A 92 DMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS 169 (334)
T ss_dssp HHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT
T ss_pred HHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH
Confidence 222222 223 244577889886544333333332221110 011222 23433222111111
Q ss_pred cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCchHHHHH
Q 038265 304 MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 304 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 360 (883)
.....+.+++.+.++-.+++.+.+...+.. ...+.+..|+++++|.|-.+..+
T Consensus 170 -R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 170 -RFGIILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp -TCSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred -hcCceeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHHHHH
Confidence 111347899999999999998877433222 22356788999999999755443
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=0.0014 Score=66.63 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=92.6
Q ss_pred CCccccchhhHHHHHHHHh---cCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCcHHHHHHHHHHHhhCC-
Q 038265 163 TSDIIGRYEDGEKIIELLM---QTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFGKRQIMTKIINSVIGG- 234 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~~~~i~~~~~~~- 234 (883)
-.+++|.+..++++.+.+. .... ......+-|.|+|++|+||||+|+.+++... +|- .+.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~----------~i~~~~ 80 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF----------TISGSD 80 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEE----------EECSCS
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEE----------EEeHHH
Confidence 4579999988887765432 1100 0001233588999999999999999976532 110 00000
Q ss_pred ---CCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC----------h----hhHHHHHHhcCC--CCCCCEEEEeecCh
Q 038265 235 ---NHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED----------P----RAWGELKSLLLG--GAEGSKILVTTRSN 295 (883)
Q Consensus 235 ---~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~----~~~~~l~~~l~~--~~~gs~iivTtr~~ 295 (883)
.............+.........++++|+++... . .....+...+.. ...+..||.||...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 0111222333344444445567899999983210 0 011122222221 12344566676654
Q ss_pred HHHH-HH-cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCC-CchHHHH
Q 038265 296 KVAL-IM-GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRG-IPLAVRT 359 (883)
Q Consensus 296 ~v~~-~~-~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~ 359 (883)
.... .. ........+.+...+.++-.+++.............. ...++..+.| .+--|..
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 3211 11 1111124677888888888888877663221111111 2346667777 5544443
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.0003 Score=74.01 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=37.5
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 165 DIIGRYEDGEKIIELLMQTS---DGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.+++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 47899998888887775421 1111224589999999999999999987653
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.42 E-value=0.00014 Score=86.70 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=83.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHH--HH----HHHhhCCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMT--KI----INSVIGGNHG 237 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~--~i----~~~~~~~~~~ 237 (883)
+.++||+++++++.+.|... ...-+.++|.+|+|||++|+.+++....-.....+. .+ ...+......
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 56899999999999998652 234578999999999999999876430000000000 00 0000000111
Q ss_pred CCChHHHHHHHHHHc-CCCceEEEEeCCCCC--------ChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcc----c
Q 038265 238 NLDPDRMQKVLRDSL-NGKRYLLVMDDVWNE--------DPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGT----M 304 (883)
Q Consensus 238 ~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~----~ 304 (883)
....+.....+.+.+ ..++.+|++|+++.. ...+...+...+.. ..+.++|.+|........... .
T Consensus 260 ~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~ 338 (758)
T 1r6b_X 260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALA 338 (758)
T ss_dssp SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSG
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHH
Confidence 112233333333333 446789999999653 11111112211212 234566666654433211110 0
Q ss_pred CCCCceecCCCChhcHHHHHHHHH
Q 038265 305 RGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 305 ~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
.....+.+.+++.++..+++....
T Consensus 339 ~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 339 RRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp GGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hCceEEEcCCCCHHHHHHHHHHHH
Confidence 011357899999999888887654
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.40 E-value=0.00073 Score=80.45 Aligned_cols=144 Identities=20% Similarity=0.248 Sum_probs=79.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC-----------CCCcHHHHHHHHHHHhh
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ-----------KDFGKRQIMTKIINSVI 232 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-----------~~~~~~~~~~~i~~~~~ 232 (883)
+.+|||+++++++...+... ...-+.++|++|+|||++|+.+++.. ..+-....
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 46999999999999998652 22347899999999999999987653 00000000
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHHHHcc----cCCCC
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMGT----MRGTT 308 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~----~~~~~ 308 (883)
+..........+...+......++.+|++|.. .+ .-..+...+. ....++|.||........... .....
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~~--~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~ 318 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQAGNIILFIDAA--ID--ASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (758)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred cccccchHHHHHHHHHHHHHhcCCEEEEEcCc--hh--HHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCc
Confidence 01111111122334444444577899999922 11 1111222222 223466666654432111100 00114
Q ss_pred ceecCCCChhcHHHHHHHHH
Q 038265 309 GYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 309 ~~~l~~L~~~~a~~lf~~~a 328 (883)
.+.+..++.++..+++....
T Consensus 319 ~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 68999999999999998665
No 225
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0004 Score=75.20 Aligned_cols=182 Identities=15% Similarity=0.086 Sum_probs=96.3
Q ss_pred cCCccccchhhHHHHHHHHhcC---CC----CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C-cHHHHHHHHHHHhh
Q 038265 162 RTSDIIGRYEDGEKIIELLMQT---SD----GESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F-GKRQIMTKIINSVI 232 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~-~~~~~~~~i~~~~~ 232 (883)
.-.++.|.++..++|.+.+..+ ++ .+-...+-|.++|++|.|||.||+++++.... | ... ...+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~------~s~l~ 252 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA------APQLV 252 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE------GGGGC
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe------hhhhh
Confidence 3467899999988887764321 00 01234578999999999999999999876411 0 000 00001
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC-----Ch-----hh----HHHHHHhcCCC--CCCCEEEEeecChH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE-----DP-----RA----WGELKSLLLGG--AEGSKILVTTRSNK 296 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----~~-----~~----~~~l~~~l~~~--~~gs~iivTtr~~~ 296 (883)
..+.......+...+...-...+++|++|+++.. +. .. ...+...+.+. ..+-.||.||..++
T Consensus 253 -~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 253 -QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp -SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred -hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch
Confidence 1111111111222222223356899999998531 00 01 11233333332 23445566776554
Q ss_pred HHHHHccc--CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 297 VALIMGTM--RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 297 v~~~~~~~--~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
.....-.. .-...+.++..+.++-.++|..+..+......-++ ..|++.+.|.-
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 33221111 11256888888998888998877644332222233 45677777643
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.34 E-value=0.00039 Score=73.05 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcC--CCC------CCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQT--SDG------ESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|.++.++.+...+... ... .......+.++|++|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999888777531 000 00123467899999999999999997654
No 227
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=0.0015 Score=67.92 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=88.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCCCCCCChHHHHHH
Q 038265 168 GRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGNHGNLDPDRMQKV 247 (883)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 247 (883)
|-++.++.+...+... . .+...++|++|+||||+|+.+.+....+... -.++ .. ..........+...+.
T Consensus 1 g~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~--~~d~-~~-l~~~~~~~~id~ir~l 70 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPK--ASDV-LE-IDPEGENIGIDDIRTI 70 (305)
T ss_dssp ---CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCC--TTTE-EE-ECCSSSCBCHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhcc--CCCE-EE-EcCCcCCCCHHHHHHH
Confidence 3455566777777542 2 6789999999999999999986631000000 0000 00 0000012333444443
Q ss_pred HHHHc----CCCceEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH-HHHHHcccCCCCceecCCCChhcHHH
Q 038265 248 LRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMGTMRGTTGYNLQELPYKDCLS 322 (883)
Q Consensus 248 l~~~l----~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~~~l~~L~~~~a~~ 322 (883)
+...- .+++-++|+|+++.........+...+-...+.+.+|++|.++. +.... ... .+++.++++++..+
T Consensus 71 i~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI---~SR-~~~f~~l~~~~i~~ 146 (305)
T 2gno_A 71 KDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI---KSR-VFRVVVNVPKEFRD 146 (305)
T ss_dssp HHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH---HTT-SEEEECCCCHHHHH
T ss_pred HHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHH---Hce-eEeCCCCCHHHHHH
Confidence 33221 24567999999987776667777777766667788888876543 22222 222 89999999999999
Q ss_pred HHHHHH
Q 038265 323 LFMKCA 328 (883)
Q Consensus 323 lf~~~a 328 (883)
.+....
T Consensus 147 ~L~~~~ 152 (305)
T 2gno_A 147 LVKEKI 152 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888776
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.25 E-value=0.0022 Score=70.71 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=95.1
Q ss_pred CCccccchhhHHHHHHHHhcC--C----CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCC-CCcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQT--S----DGESETVSVIPIVGIGGLGKTALAKLVYNDQK-DFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~--~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~~~~i~~~~~~~~ 235 (883)
-.+++|.++.++++.+.+..- . .-+....+-|.|+|++|+|||+||+.+++... +|-... ...+.. .
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is-----~~~~~~-~ 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS-----GSDFVE-L 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE-----GGGTTT-C
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC-----HHHHHH-H
Confidence 457999998887776654321 0 00011223488999999999999999987541 110000 000000 0
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh--------------hhHHHHHHhcC--CCCCCCEEEEeecChHHHH
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP--------------RAWGELKSLLL--GGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~ 299 (883)
............+.......+.+|+||+++.... ....++...+. ....+..||.||..++...
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 0011112233334444456789999999954211 01122222222 1123556777777654432
Q ss_pred HH--cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 300 IM--GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 300 ~~--~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
.. ....-...+.+...+.++-.+++..++.........++ ..+++.+.|..
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhH----HHHHHhcCCCc
Confidence 11 11111247788888888888888877643221111122 44777888876
No 229
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00092 Score=71.44 Aligned_cols=181 Identities=17% Similarity=0.096 Sum_probs=95.4
Q ss_pred CCccccchhhHHHHHHHHhcC---CC----CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C-cHHHHHHHHHHHhhC
Q 038265 163 TSDIIGRYEDGEKIIELLMQT---SD----GESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F-GKRQIMTKIINSVIG 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~-~~~~~~~~i~~~~~~ 233 (883)
-+++.|.++..++|.+.+.-+ .+ .+-...+-|.++|++|.|||.||+++++.... | ... ...+.
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~------~s~l~- 253 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV------GSELI- 253 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE------SGGGC-
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE------HHHhh-
Confidence 357889998888887765321 10 01133567999999999999999999876411 0 000 00000
Q ss_pred CCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCC----------h----hhHHHHHHhcC--CCCCCCEEEEeecChHH
Q 038265 234 GNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNED----------P----RAWGELKSLLL--GGAEGSKILVTTRSNKV 297 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~----~~~~~l~~~l~--~~~~gs~iivTtr~~~v 297 (883)
..+.......+...+...-...+++|++|+++... . ....++...+. ....+..||.||..++.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 11111111122222222334578999999986421 0 01112222222 22334456667765544
Q ss_pred HHHHccc--CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 298 ALIMGTM--RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 298 ~~~~~~~--~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
....-.. .-+..+.+...+.++-.++|..+..+......-++ ..|++.+.|.-
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 3221111 11245778888888888999887743322222233 45667776653
No 230
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0015 Score=70.64 Aligned_cols=181 Identities=18% Similarity=0.151 Sum_probs=90.9
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC-C-cHHHHHHHHHHHhhC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKD-F-GKRQIMTKIINSVIG 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~-~~~~~~~~i~~~~~~ 233 (883)
-.++.|.++..++|.+.+..+.. -+-...+-|.++|++|+|||+||+++++.... | ... ...+.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~------~~~l~- 243 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN------GSEFV- 243 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE------GGGTC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe------cchhh-
Confidence 45788999998888776532100 01234567999999999999999999876411 0 000 00000
Q ss_pred CCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC----------Chhh----HHHHHHhcCC--CCCCCEEEEeecChHH
Q 038265 234 GNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE----------DPRA----WGELKSLLLG--GAEGSKILVTTRSNKV 297 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~----------~~~~----~~~l~~~l~~--~~~gs~iivTtr~~~v 297 (883)
..........+...+...-...++++++|+++.. .... ..++...+.+ ...|-.||.||..++.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 0111111222223333333467899999998520 0001 1222222222 2334456667765432
Q ss_pred HHHH--cccCCCCceecCCC-ChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 298 ALIM--GTMRGTTGYNLQEL-PYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 298 ~~~~--~~~~~~~~~~l~~L-~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
.... ....-...+.+..+ +.++-.++|..+..+......-++ ..+++.+.|.-
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 2111 11111245677655 455556677666543322222233 45667777653
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.07 E-value=0.00098 Score=69.16 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...+.+.++|++|+|||+||+++++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345688999999999999999998765
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.05 E-value=0.0055 Score=67.93 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=59.3
Q ss_pred eEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEee---------cC----h-----HHHHHHcccCCCCceecCCCChh
Q 038265 257 YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT---------RS----N-----KVALIMGTMRGTTGYNLQELPYK 318 (883)
Q Consensus 257 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt---------r~----~-----~v~~~~~~~~~~~~~~l~~L~~~ 318 (883)
-++++|+++..+......+...+...... -+|+.| .+ + .+...+ ..+.+.+++.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~------~~~~~~~~~~~ 369 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV------MIIRTMLYTPQ 369 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE------EEEECCCCCHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc------ceeeCCCCCHH
Confidence 38999999877777777777776654444 344344 11 1 122222 45799999999
Q ss_pred cHHHHHHHHHhcCCCCCCcchHHHHHHHHHHh-CCCchHHHHH
Q 038265 319 DCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKC-RGIPLAVRTV 360 (883)
Q Consensus 319 ~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c-~glPLai~~~ 360 (883)
+..+++...+...+.... .+....|++.+ +|.|.....+
T Consensus 370 e~~~iL~~~~~~~~~~~~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 370 EMKQIIKIRAQTEGINIS---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHHHHTCCBC---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCC---HHHHHHHHHHccCCCHHHHHHH
Confidence 999999887633222212 24556788888 7888654433
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.01 E-value=0.00096 Score=77.94 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=98.3
Q ss_pred CCccccchhhHHHHHHHHhc----CC---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQ----TS---DGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
-.++.|.++.+++|.+.+.- +. .-+-...+-|.++|++|+|||+||+++++.....-..--..++. + .
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~----s-k 277 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM----S-K 277 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH----S-S
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh----c-c
Confidence 35688999888888776532 10 01223467899999999999999999998763211000001111 1 1
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh-------hh----HHHHHHhcCCC--CCCCEEEEeecChHHHHH-H
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP-------RA----WGELKSLLLGG--AEGSKILVTTRSNKVALI-M 301 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-------~~----~~~l~~~l~~~--~~gs~iivTtr~~~v~~~-~ 301 (883)
........+...+....+..+.+|++|+++.... .. ..++...+... ..+-.||.||...+.... .
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 1112233344445555567889999999864210 01 11222222211 123345556654432211 1
Q ss_pred c-ccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 302 G-TMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 302 ~-~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
. ...-.+.+++...+.++-.++|..+..+.......++ ..|++++.|.-
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 1 0112246888888988888888876633221122233 45777777654
No 234
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.90 E-value=0.00042 Score=63.64 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...++|+|+.|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999764
No 235
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.90 E-value=0.0026 Score=64.50 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=86.5
Q ss_pred CCccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC----CcHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD------GESETVSVIPIVGIGGLGKTALAKLVYNDQKD----FGKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~~~~~~~i~~~~~ 232 (883)
-++++|.++...++.+....-.. -.-.-.+-+.|+|++|+||||||+.++..... ++...+. ...
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~----~~~- 89 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV----EMF- 89 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH----HSC-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH----HHH-
Confidence 35688988776666554321000 00000122899999999999999999876521 1111111 100
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC----------ChhhH----HHHHHhcCCCCC--CCEEEEeecChH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE----------DPRAW----GELKSLLLGGAE--GSKILVTTRSNK 296 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~----------~~~~~----~~l~~~l~~~~~--gs~iivTtr~~~ 296 (883)
.......+...+...-.....++++|+++.. ....+ ..+...+..+.. ...++.||..+.
T Consensus 90 ----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 90 ----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp ----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred ----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 0000111222222222345689999998321 00111 122223332222 223445666555
Q ss_pred HHHHHccc--CCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 297 VALIMGTM--RGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 297 v~~~~~~~--~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
.....-.. .-...+.+...+.++-.+++...+..........+ ..+++.+.|.-
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~G~~ 221 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL----ALLAKRTPGFV 221 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCH----HHHHHHcCCCC
Confidence 43221111 12246788888888888888776632211111122 34666666643
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.65 E-value=0.0034 Score=74.70 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=81.8
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHHccC----CCCcHHHHHHHHHHHhhCCCC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSD---GESETVSVIPIVGIGGLGKTALAKLVYNDQ----KDFGKRQIMTKIINSVIGGNH 236 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~~~~~~~i~~~~~~~~~ 236 (883)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++.. ..|-... +..+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-----~s~~~~~~- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-----MSEYMEKH- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-----GGGGCSSC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-----chhccccc-
Confidence 5689999999888887764221 111223479999999999999999997653 1110000 00000000
Q ss_pred CCCChHHHHHHHHHHcCCCceEEEEeCCCCCChhhHHHHHHhcCCC-----------CCCCEEEEeecC-----hHHH--
Q 038265 237 GNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTTRS-----NKVA-- 298 (883)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~-----~~v~-- 298 (883)
......+...++. ...-+|+||++...+......+...+..+ ..+.+||+||.. ..+.
T Consensus 565 -~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~ 640 (758)
T 3pxi_A 565 -STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGE 640 (758)
T ss_dssp -CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHH
T ss_pred -ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHH
Confidence 0011112222222 23458999999777665555555544321 235688888873 1111
Q ss_pred --HHHcc---cCCCCceecCCCChhcHHHHHHHHH
Q 038265 299 --LIMGT---MRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 299 --~~~~~---~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
..... ..-...+.+.+++.++-.+++....
T Consensus 641 ~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 641 LKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred HHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 00000 0111467788888877766665544
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.63 E-value=0.011 Score=65.55 Aligned_cols=180 Identities=14% Similarity=0.092 Sum_probs=92.3
Q ss_pred cCCccccchhhHHHHHHHHh---cCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 162 RTSDIIGRYEDGEKIIELLM---QTS---DGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
...+++|.++.+.++.+... ... +-.-.-.+-|.|+|++|+||||||+.++.....-.. .+.+..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i---------~i~g~~ 99 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI---------TASGSD 99 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEE---------EEEGGG
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---------EEehhH
Confidence 45679999988777766542 110 000011223899999999999999999876521000 000000
Q ss_pred CCCCChHHHHHHHHHHcCC----CceEEEEeCCCCCC----------hhhH----HHHHHhcCCC--CCCCEEEEeecCh
Q 038265 236 HGNLDPDRMQKVLRDSLNG----KRYLLVMDDVWNED----------PRAW----GELKSLLLGG--AEGSKILVTTRSN 295 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~----kr~LlvlDdv~~~~----------~~~~----~~l~~~l~~~--~~gs~iivTtr~~ 295 (883)
............++..++. ...++++|+++... ...+ .++...+... ..+..|+.||..+
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p 179 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 179 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCG
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCCh
Confidence 0011112223334444433 34799999995321 1112 2233333322 2344566666666
Q ss_pred HHHHHHcc--cCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 296 KVALIMGT--MRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 296 ~v~~~~~~--~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
......-. ..-...+.+...+.++-.+++..++.......... ...|++.+.|..
T Consensus 180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 54321111 11224678888898888888877653211111111 245677777765
No 238
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.63 E-value=0.0051 Score=63.28 Aligned_cols=179 Identities=13% Similarity=0.119 Sum_probs=87.5
Q ss_pred CCccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCC----CcHHHHHHHHHHHhh
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSD------GESETVSVIPIVGIGGLGKTALAKLVYNDQKD----FGKRQIMTKIINSVI 232 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~~~~~~~i~~~~~ 232 (883)
-++++|.++.++++.+....-.. -.-.-.+-|.|+|++|+||||||+.++..... ++...+. ...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~----~~~- 113 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV----EMF- 113 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH----HST-
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH----HHH-
Confidence 45789998877766554321100 00000122899999999999999999876521 1111111 100
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCC----------ChhhH----HHHHHhcCCCCC--CCEEEEeecChH
Q 038265 233 GGNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNE----------DPRAW----GELKSLLLGGAE--GSKILVTTRSNK 296 (883)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~----------~~~~~----~~l~~~l~~~~~--gs~iivTtr~~~ 296 (883)
.......+...+...-.....++++|+++.. ....+ ..+...+..+.. ...++.||..+.
T Consensus 114 ----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 114 ----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp ----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT
T ss_pred ----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch
Confidence 0000111222222222345689999998421 00111 122223333222 223444565544
Q ss_pred HHHHH--cccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhCCCc
Q 038265 297 VALIM--GTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNLVKIGEKIMEKCRGIP 354 (883)
Q Consensus 297 v~~~~--~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 354 (883)
+.... ........+.+...+.++-.+++...+.......... ...+++.+.|..
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 32211 1111235788888888888888887663221111111 234666676654
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.54 E-value=0.019 Score=54.01 Aligned_cols=83 Identities=25% Similarity=0.313 Sum_probs=44.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHHHhhCCCCCCCC-------------hHHHHHHHHHHc-CCC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIINSVIGGNHGNLD-------------PDRMQKVLRDSL-NGK 255 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~l~~~l-~~k 255 (883)
.+|+|.|++|+||||+|+.+ ... ..++....+......-. ..... .......+.+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 77 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEA---KPGERLMDFAKRLREIYGDGVVARLCVEELGTSN 77 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC------CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcC---CChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Confidence 37999999999999999999 543 22334444444332211 00011 111223344445 234
Q ss_pred ceEEEEeCCCCCChhhHHHHHHhcC
Q 038265 256 RYLLVMDDVWNEDPRAWGELKSLLL 280 (883)
Q Consensus 256 r~LlvlDdv~~~~~~~~~~l~~~l~ 280 (883)
.-.+|+|++ .....++.+.....
T Consensus 78 ~~~vi~dg~--~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 78 HDLVVFDGV--RSLAEVEEFKRLLG 100 (179)
T ss_dssp CSCEEEECC--CCHHHHHHHHHHHC
T ss_pred CCeEEEeCC--CCHHHHHHHHHHhC
Confidence 456788998 34444555555443
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.47 E-value=0.0044 Score=70.16 Aligned_cols=52 Identities=27% Similarity=0.301 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+++|.++-.+.+.+.+.-..-.......++.++|++|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4588988877777554421100011235689999999999999999997654
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.44 E-value=0.0031 Score=75.02 Aligned_cols=161 Identities=15% Similarity=0.110 Sum_probs=84.2
Q ss_pred CCccccchhhHHHHHHHHhcC---C----CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhCCC
Q 038265 163 TSDIIGRYEDGEKIIELLMQT---S----DGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIGGN 235 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~---~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~~~ 235 (883)
-.+++|.++.++++.+++... . .-.-.....|.|+|++|+||||||+.+..........--- ..+.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~----~~l~~~- 277 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING----PEIMSK- 277 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEH----HHHSSS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEc----hHhhhh-
Confidence 357899999999988877431 0 0011334579999999999999999998875321100000 011111
Q ss_pred CCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh-----------hhHHHHHHhcCCC--CCCCEEEEeecChHHHHH-H
Q 038265 236 HGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP-----------RAWGELKSLLLGG--AEGSKILVTTRSNKVALI-M 301 (883)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~-~ 301 (883)
........+...+.........++++|+++.... .....+...+... ..+..+|.||..+..... .
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al 357 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHH
Confidence 1111112223333344445678999999843210 0112233322221 224455656655422111 1
Q ss_pred cc-cCCCCceecCCCChhcHHHHHHHHH
Q 038265 302 GT-MRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 302 ~~-~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
.. ..-...+.+...+.++-.+++...+
T Consensus 358 ~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 358 RRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred hcccccccccccCCCCHHHHHHHHHHHH
Confidence 10 0111346777888888888888766
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.38 E-value=0.012 Score=60.11 Aligned_cols=155 Identities=19% Similarity=0.087 Sum_probs=79.8
Q ss_pred CCccccchhhHHHHHHHHhcCC---------CCCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTS---------DGESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIG 233 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~ 233 (883)
-.++.|.++..++|.+.+..+. .-... +-++++|++|+||||||+.+......-. -.+.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~--~GvlL~Gp~GtGKTtLakala~~~~~~~---------i~i~g 77 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTP--AGVLLAGPPGCGKTLLAKAVANESGLNF---------ISVKG 77 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC--SEEEEESSTTSCHHHHHHHHHHHTTCEE---------EEEET
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC--CeEEEECCCCCcHHHHHHHHHHHcCCCE---------EEEEc
Confidence 3568888888887776542110 00111 1299999999999999999977542100 00011
Q ss_pred CCCCCCChHHH---HHHHHHH-cCCCceEEEEeCCCCCCh-----------hhHHHHHHhcCCCC--CCCEEEEeecChH
Q 038265 234 GNHGNLDPDRM---QKVLRDS-LNGKRYLLVMDDVWNEDP-----------RAWGELKSLLLGGA--EGSKILVTTRSNK 296 (883)
Q Consensus 234 ~~~~~~~~~~~---~~~l~~~-l~~kr~LlvlDdv~~~~~-----------~~~~~l~~~l~~~~--~gs~iivTtr~~~ 296 (883)
.........+. ...+.+. -.....++++|+++.... ....++...+..+. ...-++.+|..+.
T Consensus 78 ~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 78 PELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPD 157 (274)
T ss_dssp TTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGG
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChh
Confidence 11111111111 1222222 134578999999964210 01122222333321 2344556776665
Q ss_pred HHHHHcc--cCCCCceecCCCChhcHHHHHHHHH
Q 038265 297 VALIMGT--MRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 297 v~~~~~~--~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
+....-. ..-...+.+...+.++-.++|....
T Consensus 158 ~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 158 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 5432211 1223567888889988888888765
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.35 E-value=0.0027 Score=75.70 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTS---DGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|.++.++.+...+.... .........+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 468899999888877765321 0111234578999999999999999997653
No 244
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.33 E-value=0.0055 Score=73.79 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 164 SDIIGRYEDGEKIIELLMQTS---DGESETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..++|.+..++.+...+.... .........+.|+|++|+|||++|+.+++.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999998888775421 011123458999999999999999998764
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.09 E-value=0.012 Score=63.50 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998765
No 246
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.08 E-value=0.0065 Score=71.00 Aligned_cols=163 Identities=14% Similarity=0.065 Sum_probs=83.1
Q ss_pred ccCCccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHHccCCCCcHHHHHHHHHHHhhC
Q 038265 161 VRTSDIIGRYEDGEKIIELLMQTSD-------GESETVSVIPIVGIGGLGKTALAKLVYNDQKDFGKRQIMTKIINSVIG 233 (883)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~~~~i~~~~~~ 233 (883)
..-.++.|.++..++|.+.+.-+.. .+-...+-|.++|++|.|||.+|+++.+.....-..--..+++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s---- 549 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT---- 549 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT----
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc----
Confidence 3345678888888887776543211 11233456889999999999999999988732111111112221
Q ss_pred CCCCCCChHHHHHHHHHHcCCCceEEEEeCCCCCCh--------------hhHHHHHHhcCCCC--CCCEEEEeecChHH
Q 038265 234 GNHGNLDPDRMQKVLRDSLNGKRYLLVMDDVWNEDP--------------RAWGELKSLLLGGA--EGSKILVTTRSNKV 297 (883)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~--------------~~~~~l~~~l~~~~--~gs~iivTtr~~~v 297 (883)
.+...+...+.+.+...-+..+.+|++|+++.--. .-..++...+.+.. .+--||-||..++.
T Consensus 550 -~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 550 -MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp -TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred -cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 22223344444555555566889999999864210 01122333333322 22223335543332
Q ss_pred HHH--HcccCCCCceecCCCChhcHHHHHHHHH
Q 038265 298 ALI--MGTMRGTTGYNLQELPYKDCLSLFMKCA 328 (883)
Q Consensus 298 ~~~--~~~~~~~~~~~l~~L~~~~a~~lf~~~a 328 (883)
... .....-...+.+...+.++-.++|..+.
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 211 1111123577887777777777776655
No 247
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.99 E-value=0.017 Score=54.58 Aligned_cols=69 Identities=9% Similarity=0.157 Sum_probs=38.9
Q ss_pred cCCCceEEEEeCCCCC---ChhhHHHHHHhcCCCCCCCEEEEee---cChHHHHHHcccCCCCceecCCCChhcHHH
Q 038265 252 LNGKRYLLVMDDVWNE---DPRAWGELKSLLLGGAEGSKILVTT---RSNKVALIMGTMRGTTGYNLQELPYKDCLS 322 (883)
Q Consensus 252 l~~kr~LlvlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTt---r~~~v~~~~~~~~~~~~~~l~~L~~~~a~~ 322 (883)
+..+.-+++||.+... +....+.+...+.. .+..+|++| .+...............+++...+.++..+
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 6677779999995322 22233445555544 355466666 354555544443333578877776655443
No 248
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.73 E-value=0.02 Score=54.32 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHcCCCce-EEEEeCCCC---CChhhHHHHHHhcCCCCCCCEEEEeecChH
Q 038265 247 VLRDSLNGKRY-LLVMDDVWN---EDPRAWGELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 247 ~l~~~l~~kr~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
.+++.+...+| |||||++-. -.....+++...+........||+|+|...
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 34555655555 999999821 123344566666766666789999999853
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.55 E-value=0.012 Score=60.47 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=40.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC--C-CC-cHHHHHHHHHHHhhCC--CCCCCChHHHHHHHHHHcCCCceEEEEeCC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ--K-DF-GKRQIMTKIINSVIGG--NHGNLDPDRMQKVLRDSLNGKRYLLVMDDV 264 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~--~-~~-~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv 264 (883)
.+++.|+|++|+|||+||.++.... . .| +.+ ..+ .....+.+.....+.+.+.+.+ +||+|++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~----------~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI 191 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVR----------FGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSL 191 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEE----------BSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEec----------chhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecc
Confidence 4578899999999999999886531 0 00 000 000 0011345666666666666666 9999999
Q ss_pred CC
Q 038265 265 WN 266 (883)
Q Consensus 265 ~~ 266 (883)
..
T Consensus 192 ~a 193 (331)
T 2vhj_A 192 KN 193 (331)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.52 E-value=0.013 Score=56.74 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 169 RYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
|++.++.+.+.+.... .....+|+|.|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556777777776521 24567999999999999999998854
No 251
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.39 E-value=0.083 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|.|||||.+.+..-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999643
No 252
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.30 E-value=0.046 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.085 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..+++|+|.+|+||||||..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999988864
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.13 E-value=0.0071 Score=59.22 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=55.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC-----------CCCcHHHHHHHHHHHhhCCCCC---CCChHHHHHHHHHHcCCC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ-----------KDFGKRQIMTKIINSVIGGNHG---NLDPDRMQKVLRDSLNGK 255 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~-----------~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~l~~~l~~k 255 (883)
...++.|+|..|+||||++..+..+. ...+.+ ....+...+ +-... .....++.+.+.+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~~~i~srl-G~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRT-GTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GCSSCCCCC-CCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HHHHHHHhc-CCCccccccCCHHHHHHHHHHHhhCC
Confidence 35699999999999999997665443 112222 111122221 11111 112344555555555444
Q ss_pred ce-EEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecCh
Q 038265 256 RY-LLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 295 (883)
Q Consensus 256 r~-LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 295 (883)
++ +||+|.+...+....+.+.. +.+ .|-.||+|.++.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred CCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 45 99999996544333334433 222 267899998854
No 254
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.07 E-value=0.097 Score=55.14 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=37.7
Q ss_pred CCChHHHHH-HHHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCC--CCCCEEEEeecChHHHHHH
Q 038265 238 NLDPDRMQK-VLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG--AEGSKILVTTRSNKVALIM 301 (883)
Q Consensus 238 ~~~~~~~~~-~l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~ 301 (883)
..+..+.+. .|...|..++=+|++|..-.. |...-..+...+..- ..|..||++|.+...+...
T Consensus 163 ~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~ 230 (366)
T 3tui_C 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 230 (366)
T ss_dssp TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 344444433 355677788889999987432 332333344333321 2377899999998776554
No 255
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.06 E-value=0.016 Score=55.26 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=38.8
Q ss_pred hhHHhhccCCcccEEEecCc-ccc-----ccccccCCCCCceEecccCCcccc----ccCccccCCCcccEeecCCCCCC
Q 038265 551 FVTSCISKSKSLRVLVLMNS-AIE-----VLPRKMGNLRQLRHLDLSGNRKIK----KLPNSICELQSLQTLNLGDCLEL 620 (883)
Q Consensus 551 ~~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~L~~~~~~ 620 (883)
.+...+.+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.+.. .+-..+..-+.|++|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34444556667777777764 553 233445555667777777665322 22233334456666666665443
No 256
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.05 E-value=0.013 Score=55.86 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=51.3
Q ss_pred cCCCCCceEecccCCcccc-----ccCccccCCCcccEeecCCCCCCcc----CCccccCCcccCEEEeCCccccc----
Q 038265 579 MGNLRQLRHLDLSGNRKIK-----KLPNSICELQSLQTLNLGDCLELEE----LPKDIRYLVSLRMFVVTTKQKSL---- 645 (883)
Q Consensus 579 ~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~~---- 645 (883)
+.+-+.|+.|+|++|..++ .+-..+..-+.|+.|+|++|..... +...+..-+.|++|+|+.|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 3455678888888752233 2344455667888888888765432 23334455677777777777662
Q ss_pred -cccccCCCCCCCeEEeecC
Q 038265 646 -LESGIGCLSSLRFLMISDC 664 (883)
Q Consensus 646 -~~~~~~~l~~L~~L~l~~~ 664 (883)
+-..+..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2233444455777777654
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.00 E-value=0.017 Score=56.25 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 173 GEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.++|.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44455555331 24567999999999999999988754
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.97 E-value=0.38 Score=50.80 Aligned_cols=156 Identities=13% Similarity=-0.012 Sum_probs=100.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHHHhhCCCCCCCChHHHHHHHHH-HcCCCceEEEEeCCCC-
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIINSVIGGNHGNLDPDRMQKVLRD-SLNGKRYLLVMDDVWN- 266 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlvlDdv~~- 266 (883)
.++..++|+.|.||++.|+.+.+.. ..++.. .... .....+..++.+.+.. -+-+++-++|+|+++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~--------~~~~-~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEH--------HTFS-IDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEE--------EEEE-CCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCee--------EEEE-ecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 4689999999999999998875532 011000 0000 0122455555554433 3456777889999976
Q ss_pred CChhhHHHHHHhcCCCCCCCEEEEeecC-------hHHHHHHcccCCCCceecCCCChhcHHHHHHHHHhcCCCCCCcch
Q 038265 267 EDPRAWGELKSLLLGGAEGSKILVTTRS-------NKVALIMGTMRGTTGYNLQELPYKDCLSLFMKCAFKEGKEKHPNL 339 (883)
Q Consensus 267 ~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~ 339 (883)
.....++.+...+....+++.+|++|.. ..+..... ..+..++..+++.++..+.+...+...+....
T Consensus 89 l~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~--sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~--- 163 (343)
T 1jr3_D 89 PNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA--NRSVQVTCQTPEQAQLPRWVAARAKQLNLELD--- 163 (343)
T ss_dssp CCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHT--TTCEEEEECCCCTTHHHHHHHHHHHHTTCEEC---
T ss_pred CChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHH--hCceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---
Confidence 5556778888888766678888877643 12333322 22367899999999998888887754443222
Q ss_pred HHHHHHHHHHhCCCchHHHHH
Q 038265 340 VKIGEKIMEKCRGIPLAVRTV 360 (883)
Q Consensus 340 ~~~~~~i~~~c~glPLai~~~ 360 (883)
.+.+..+++.++|...++...
T Consensus 164 ~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 164 DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHH
Confidence 255678999999988777653
No 259
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.91 E-value=0.031 Score=54.11 Aligned_cols=70 Identities=13% Similarity=0.273 Sum_probs=43.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHHH----------hhCCCCCCCChHHHHHHHHHHcCCCceEEE
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIINS----------VIGGNHGNLDPDRMQKVLRDSLNGKRYLLV 260 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~~~~l~~~l~~kr~Llv 260 (883)
+|.|.|++|+||+|.|+.+.++. ...+..+++.+.+.. ..... .....+-....+.+.+..... +|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G-~lvpd~iv~~lv~~~l~~~~~-~i 79 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERG-ELVPDDLIIALIEEVFPKHGN-VI 79 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHT-CCCCHHHHHHHHHHHCCSSSC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcC-CcCCHHHHHHHHHHhhccCCc-eE
Confidence 57889999999999999998765 233444444432221 11111 122334556777788876554 68
Q ss_pred EeCC
Q 038265 261 MDDV 264 (883)
Q Consensus 261 lDdv 264 (883)
||+.
T Consensus 80 lDGf 83 (206)
T 3sr0_A 80 FDGF 83 (206)
T ss_dssp EESC
T ss_pred ecCC
Confidence 8997
No 260
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.85 E-value=0.055 Score=54.95 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCC--CCCCEEEEeecChHHHH
Q 038265 248 LRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG--AEGSKILVTTRSNKVAL 299 (883)
Q Consensus 248 l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~ 299 (883)
+...|-.++=+++||..-.. |...-..+...+... ..|..||++|.+...+.
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 34455666779999987432 333344444444332 23777899998876553
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.72 E-value=0.019 Score=60.60 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|+++.++.+...+... .-+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35889999998888877652 258899999999999999997754
No 262
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.67 E-value=0.1 Score=52.44 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|+|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999999964
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.60 E-value=0.016 Score=54.84 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998865
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.58 E-value=0.024 Score=58.21 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5578999999999999999987744
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.57 E-value=0.015 Score=54.60 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+|+|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998765
No 266
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.55 E-value=0.027 Score=62.42 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|+++.++.+...+... .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4889999888888777552 268899999999999999998755
No 267
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.51 E-value=0.02 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+++|+|++|+|||||++.+....
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999997763
No 268
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.47 E-value=0.02 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 269
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.42 E-value=0.11 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999964
No 270
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.32 E-value=0.02 Score=55.26 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|+|+|++|+||||+|+.+....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999997653
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.28 E-value=0.032 Score=59.69 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=36.5
Q ss_pred ccccchhhHHHHHHHHhcC-------C--CCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 165 DIIGRYEDGEKIIELLMQT-------S--DGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4789988888887777210 0 0011234578999999999999999998765
No 272
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.28 E-value=0.022 Score=53.96 Aligned_cols=24 Identities=13% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999988654
No 273
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.12 E-value=0.15 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 358999999999999999998653
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.09 E-value=0.047 Score=56.03 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
....+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999997653
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.08 E-value=0.02 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.02 E-value=0.025 Score=53.83 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=25.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIM 224 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~ 224 (883)
.+.|.|+|++|+||||+|+.+.... ..++...+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~ 40 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEI 40 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHH
Confidence 3578999999999999999997653 333444443
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.01 E-value=0.036 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|+|+.|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999988654
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.00 E-value=0.033 Score=53.86 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...+|+|+|+.|+||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988654
No 279
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.94 E-value=0.032 Score=53.47 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKIIN 229 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~~ 229 (883)
..+|.|.|++|+||||+|+.+.... ..++...+...+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~ 45 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFD 45 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHH
Confidence 4689999999999999999987653 33454444444443
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.88 E-value=0.03 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987653
No 281
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.87 E-value=0.032 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|+|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4699999999999999999997654
No 282
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.86 E-value=0.034 Score=53.85 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+..+|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999997654
No 283
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.85 E-value=0.19 Score=52.89 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=35.4
Q ss_pred CChHHHHH-HHHHHcCCCceEEEEeCCCCC-ChhhHHHHHHhcCCC--CCCCEEEEeecChHHHHHH
Q 038265 239 LDPDRMQK-VLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG--AEGSKILVTTRSNKVALIM 301 (883)
Q Consensus 239 ~~~~~~~~-~l~~~l~~kr~LlvlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~ 301 (883)
.+..+.+. .+...|-.++=+++||.--.. |...-..+...+..- ..|..||++|.+...+..+
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 212 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV 212 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh
Confidence 34444333 345666777889999986432 332333333333221 1266789999987766544
No 284
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.77 E-value=0.026 Score=60.07 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 163 TSDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-.+++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++..
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred chhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHhC
Confidence 346899988666544444321 11238999999999999999998765
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.75 E-value=0.031 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|+|+.|+||||+++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999999998654
No 286
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.71 E-value=0.031 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4699999999999999999644
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.70 E-value=0.037 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999876
No 288
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.70 E-value=0.035 Score=57.64 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=19.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLV 211 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v 211 (883)
...+||+|.|-|||||||.|..+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHH
Confidence 45789999999999999988555
No 289
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.68 E-value=0.037 Score=52.61 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc-C--CCCcHHHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND-Q--KDFGKRQIMT 225 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~-~--~~~~~~~~~~ 225 (883)
...+|+|+|++|+||||+|+.+... . ..++...+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~ 47 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK 47 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHH
Confidence 3468999999999999999999876 2 2344444443
No 290
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.67 E-value=0.056 Score=54.40 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 174 EKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+++...+..... ......+|.|+|++|+||||+|+.+....
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 16 ARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344444443321 23456899999999999999999987654
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.65 E-value=0.025 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997653
No 292
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.64 E-value=0.039 Score=53.60 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....+|+|+|++|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999775
No 293
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.63 E-value=0.067 Score=55.78 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=31.5
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 167 IGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
|+-+.-.+++++.+.... .......|.|+|++|+||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344555566666664322 1234567999999999999999988664
No 294
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.63 E-value=0.06 Score=55.83 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=31.0
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 167 IGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+|....+..+...+.... ......+|+|.|+.|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444444555555554432 235678999999999999999988743
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.62 E-value=0.033 Score=56.10 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
++|.|+|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998764
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.60 E-value=0.17 Score=53.42 Aligned_cols=102 Identities=12% Similarity=0.171 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCCCC---------cHHHHH-HHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEEE
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQKDF---------GKRQIM-TKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLVM 261 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~~~---------~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llvl 261 (883)
.+++|+|+.|+||||+.+.+....... +..... ... ...........+.......+...|...+=+|++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-KCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-ccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 499999999999999999885432000 000000 000 000000000111123455788899999999999
Q ss_pred eCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHHH
Q 038265 262 DDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 299 (883)
Q Consensus 262 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 299 (883)
|.+. +...++.+.... ..|..||+|+.....+.
T Consensus 203 DEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 203 GEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 9995 444444444432 23667899988766553
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.60 E-value=0.029 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998765
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.59 E-value=0.039 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 58999999999999999999764
No 299
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.59 E-value=0.029 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999987654
No 300
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.58 E-value=0.26 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|.|||||.+.+.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999954
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.57 E-value=0.036 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998764
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.57 E-value=0.038 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988764
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.57 E-value=0.034 Score=51.92 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=26.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMT 225 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~ 225 (883)
...+|+|.|++|+||||+|+.+.... ..++...+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~ 43 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIIS 43 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence 45699999999999999999997753 3444444443
No 304
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.52 E-value=0.037 Score=53.58 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999988654
No 305
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.50 E-value=0.4 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999977753
No 306
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.49 E-value=0.092 Score=46.45 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=31.4
Q ss_pred EEEecCcccc--ccccccCCCCCceEecccCCccccccCc-cccCCCcccEeecCCCC
Q 038265 564 VLVLMNSAIE--VLPRKMGNLRQLRHLDLSGNRKIKKLPN-SICELQSLQTLNLGDCL 618 (883)
Q Consensus 564 ~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 618 (883)
.++.++++++ .+|..+. .+|++|+|++|. +..+|. .+..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 5666677766 6665543 356777777665 444443 34556666666666653
No 307
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.47 E-value=0.33 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|.|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999964
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.45 E-value=0.041 Score=55.38 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999999988664
No 309
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.42 E-value=0.039 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999987654
No 310
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.42 E-value=0.042 Score=53.50 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...++|.|.|++|+||||.|+.+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999997765
No 311
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.39 E-value=0.044 Score=53.44 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999998855
No 312
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.37 E-value=0.055 Score=54.07 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...+|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997643
No 313
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.35 E-value=0.033 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999988643
No 314
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.33 E-value=0.049 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|++.|++|+||||+|+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 315
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.33 E-value=0.041 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999998764
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.32 E-value=0.046 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.32 E-value=0.04 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|+|.|++|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997643
No 318
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.31 E-value=0.033 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.|.|.|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997654
No 319
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.29 E-value=0.054 Score=51.51 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
....+|.|.|++|+||||+++.+....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999886653
No 320
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.26 E-value=0.043 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999987754
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.26 E-value=0.041 Score=53.29 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 038265 193 VIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999876
No 322
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.24 E-value=0.046 Score=55.30 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.20 E-value=0.049 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33458999999999999999998764
No 324
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.19 E-value=0.033 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
|.|.|+|+.|+|||||++++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999998754
No 325
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.16 E-value=0.033 Score=52.93 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHH
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMT 225 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~ 225 (883)
+|+|.|++|+||||+|+.+.... ..++...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~ 38 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIE 38 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHH
Confidence 68999999999999999997753 3445444443
No 326
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.16 E-value=0.29 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|.|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999964
No 327
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.15 E-value=0.24 Score=52.45 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|.|||||.+.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999964
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.08 E-value=0.052 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|+|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999987643
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.07 E-value=0.046 Score=53.95 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHH
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTK 226 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~ 226 (883)
.+|+|+|+.|+||||+|+.+.... ...+...+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 489999999999999999987643 23344444443
No 330
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.07 E-value=0.048 Score=52.06 Aligned_cols=25 Identities=12% Similarity=0.456 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999988654
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.03 E-value=0.06 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 332
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.99 E-value=0.045 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|+|.|++|+||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997753
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.99 E-value=0.039 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999775
No 334
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.97 E-value=0.056 Score=51.64 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=27.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc--CCCCcHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND--QKDFGKRQIMTK 226 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~--~~~~~~~~~~~~ 226 (883)
..-.+|+|.|+.|+||||+|+.+... ...++...+..+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~ 49 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHE 49 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHH
Confidence 44679999999999999999999775 233444444333
No 335
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.95 E-value=0.08 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....|+|+|.+|+|||||+.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999887543
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.95 E-value=0.052 Score=50.58 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHH
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIM 224 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~ 224 (883)
.|+|.|++|+||||+|+.+.+.. ..++...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~ 35 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEV 35 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHH
Confidence 58999999999999999997743 334444443
No 337
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.93 E-value=0.22 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999964
No 338
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.87 E-value=0.042 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998854
No 339
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.86 E-value=0.075 Score=50.55 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 173 GEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+..+..++..- +.-..+.|+|++|+||||+|.++.+.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666431 22346899999999999999888654
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.86 E-value=0.22 Score=52.46 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999999964
No 341
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.86 E-value=0.27 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998653
No 342
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.85 E-value=0.39 Score=45.66 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=27.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC-----CCCcHHHHHHH
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ-----KDFGKRQIMTK 226 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~-----~~~~~~~~~~~ 226 (883)
...+|+|+|++|+||+|+|..+.+.. ..+.....+++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~ 51 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE 51 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH
Confidence 45799999999999999998876532 22445555553
No 343
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.84 E-value=0.06 Score=55.89 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4467999999999999999998754
No 344
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.80 E-value=0.079 Score=52.11 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=28.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKII 228 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i~ 228 (883)
..+|+|.|++|+||||+|+.+.... ..++...+...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 3589999999999999999997653 3345555555543
No 345
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.79 E-value=0.052 Score=53.29 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999997754
No 346
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.77 E-value=0.063 Score=50.69 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...+|+|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988664
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.76 E-value=0.078 Score=51.82 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHH
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTK 226 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~ 226 (883)
.|+|.|++|+||||+|+.+.... ..++...++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 47899999999999999997654 33444444443
No 348
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.76 E-value=0.035 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999997654
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.75 E-value=0.056 Score=51.73 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 350
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.75 E-value=0.054 Score=54.29 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|+|+.|+|||||++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999843
No 351
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.72 E-value=0.062 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999999873
No 352
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.64 E-value=0.084 Score=51.73 Aligned_cols=41 Identities=27% Similarity=0.224 Sum_probs=29.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 168 GRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+.++..+.+...+.. ....+|+|+|.+|+|||||+.++...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555555432 34689999999999999999887543
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.57 E-value=0.069 Score=53.43 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998855
No 354
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.53 E-value=0.2 Score=48.89 Aligned_cols=71 Identities=10% Similarity=0.198 Sum_probs=41.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHH----------HHHhhCCCCCCCChHHHHHHHHHHcCCC--ceE
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKI----------INSVIGGNHGNLDPDRMQKVLRDSLNGK--RYL 258 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~l~~~l~~k--r~L 258 (883)
.++|.|++|+||||+|+.+.+.. ...+...++.+. +.+..... .....+.....+++.+... .--
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G-~lvpdei~~~ll~~~l~~~~~~~g 88 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEG-KLVPDSLIIGLVKERLKEADCANG 88 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHSGGGTTC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhc-cccccHHHHHHHHHHHhCcccCCC
Confidence 68999999999999999987754 344444444432 22222221 2223344556666666431 113
Q ss_pred EEEeCC
Q 038265 259 LVMDDV 264 (883)
Q Consensus 259 lvlDdv 264 (883)
+|||+.
T Consensus 89 ~ILDGf 94 (230)
T 3gmt_A 89 YLFDGF 94 (230)
T ss_dssp EEEESC
T ss_pred eEecCC
Confidence 467987
No 355
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.48 Score=53.87 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=62.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccCC---------------------CC--cHHHHH--------------HHHHHHhh--
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQK---------------------DF--GKRQIM--------------TKIINSVI-- 232 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~~---------------------~~--~~~~~~--------------~~i~~~~~-- 232 (883)
.+++|+|+.|+|||||++.+..-.. .| ...+.+ .+++..+.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 5799999999999999999965320 01 122211 11222221
Q ss_pred ---CCCCCCCChHHHHH-HHHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCC--CCCCEEEEeecChHHHHHHc
Q 038265 233 ---GGNHGNLDPDRMQK-VLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG--AEGSKILVTTRSNKVALIMG 302 (883)
Q Consensus 233 ---~~~~~~~~~~~~~~-~l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~ 302 (883)
.......+..+.++ .+...|..+.=+++||.--. .|...-..+...+... ..|..||++|.+...+....
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a 535 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA 535 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 11122345555444 35567888888999998632 1322223333333221 23667888888877765543
No 356
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.50 E-value=0.32 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+|+++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999977753
No 357
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.47 E-value=0.062 Score=52.43 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.46 E-value=0.059 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.43 E-value=0.056 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998654
No 360
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.38 E-value=0.087 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999999988553
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.36 E-value=0.069 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 362
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.35 E-value=0.067 Score=51.91 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 459999999999999999988543
No 363
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.33 E-value=0.062 Score=52.54 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHH
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTK 226 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~ 226 (883)
.|+|.|++|+||||+|+.+.... ..++...++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHH
Confidence 47899999999999999986653 33444444443
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.28 E-value=0.07 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988765
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.24 E-value=0.071 Score=52.15 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999988653
No 366
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.21 E-value=0.06 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998854
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.05 E-value=0.08 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+|+|+|+.|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999988753
No 368
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.04 E-value=0.091 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988654
No 369
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.00 E-value=0.13 Score=49.05 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.....|+|+|.+|+|||||+..+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345688999999999999999887654
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.97 E-value=0.045 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999988543
No 371
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.97 E-value=0.5 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988553
No 372
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.96 E-value=0.092 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.90 E-value=0.082 Score=53.13 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=26.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTK 226 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~ 226 (883)
..+|+|+|+.|+||||+++.+.... ...+...+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 3589999999999999999998654 23344444433
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.90 E-value=0.06 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997654
No 375
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.86 E-value=0.12 Score=53.68 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 172 DGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.++.+.+++..... .....+.|+|++|+|||+||+++++.
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445556654221 12467899999999999999998764
No 376
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.58 E-value=0.063 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988744
No 377
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.57 E-value=0.63 Score=49.93 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 165 DIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|....+.++.+.+..-. .... .|.|.|..|+|||++|+.++...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a---~~~~-~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS---CAEC-PVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT---TCCS-CEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhc---CCCC-CeEEecCCCcCHHHHHHHHHHhc
Confidence 47787777888777665422 1223 34899999999999999997654
No 378
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.57 E-value=0.093 Score=54.59 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|+|.|+.|+||||||+.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999987754
No 379
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.48 E-value=0.18 Score=54.59 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhcC-------CC-CCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQT-------SD-GESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+++|.++..+.+...+... .. ......+-|.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 46889888888776665321 00 011124568899999999999999997754
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.47 E-value=0.087 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 038265 193 VIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+++|+|+.|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999988854
No 381
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.47 E-value=0.1 Score=51.48 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..-.+++|+|+.|+|||||++.+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998854
No 382
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.44 E-value=0.11 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+|+|.|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999988754
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.42 E-value=0.087 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999997654
No 384
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.32 E-value=0.098 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
..+++++|.+|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999997764
No 385
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.32 E-value=0.18 Score=53.44 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+|+|+|.+|+|||||+..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988753
No 386
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.31 E-value=0.1 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
..+++|+|+.|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999999874
No 387
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.29 E-value=0.12 Score=53.32 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+++|+|+.|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999988754
No 388
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.28 E-value=0.082 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+|+|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999997643
No 389
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.27 E-value=0.13 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|.|+|+.|+||||||..+....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4699999999999999999998875
No 390
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.26 E-value=0.11 Score=50.43 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHH
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKI 227 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i 227 (883)
+|+|.|+.|+||||+|+.+.... ..++...+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence 89999999999999999997753 344555554443
No 391
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.16 E-value=0.14 Score=58.73 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+++|.+..++.+...+... ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 56899998888877777542 488999999999999999998765
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.12 E-value=0.11 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 393
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.11 E-value=0.31 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..++|+|.+|+|||||+..+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 36899999999999999877543
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.11 E-value=0.072 Score=52.76 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999987
No 395
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.09 E-value=0.13 Score=52.63 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.++|+|.|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998765
No 396
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.08 E-value=0.11 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999988754
No 397
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.07 E-value=0.11 Score=53.59 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
++|.|+|+.|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999997764
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.01 E-value=0.11 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988553
No 399
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.99 E-value=0.14 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
.+..++.+.|.||+||||++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 456899999999999999998875
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.98 E-value=0.11 Score=50.58 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHH
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTK 226 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~ 226 (883)
.|+|.|++|+||||+|+.+.... ..++...++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 47899999999999999997643 34455455544
No 401
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.96 E-value=0.14 Score=52.70 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+|+|+|.+|+||||++..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3467999999999999999987754
No 402
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.93 E-value=0.12 Score=51.41 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC--CCCcHHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ--KDFGKRQIMTKI 227 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~~~~~~~i 227 (883)
....+|+|.|+.|+||||+++.+.... ..++...+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 456689999999999999999987643 334555555443
No 403
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.90 E-value=0.44 Score=54.22 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=62.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC-----------------C------CCcHHHHHHH--------------HHHHhhCC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ-----------------K------DFGKRQIMTK--------------IINSVIGG 234 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~-----------------~------~~~~~~~~~~--------------i~~~~~~~ 234 (883)
.+++|+|+.|+|||||++.+.... + ..++...+.. ++..+.-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 489999999999999999997532 0 1122222211 12221111
Q ss_pred -----CCCCCChHHHHH-HHHHHcCCCceEEEEeCCCC-CChhhHHHHHHhcCCC--CCCCEEEEeecChHHHHHHc
Q 038265 235 -----NHGNLDPDRMQK-VLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG--AEGSKILVTTRSNKVALIMG 302 (883)
Q Consensus 235 -----~~~~~~~~~~~~-~l~~~l~~kr~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~ 302 (883)
.....+..+.+. .+...|..+.=+++||.--. -|...-..+...+... ..|..||++|.+...+....
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~a 539 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 539 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 112234444444 35567778888999998633 2333333333333221 23567888898877665543
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.86 E-value=0.11 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...|.|.|++|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999997654
No 405
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.82 E-value=0.14 Score=53.30 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999988754
No 406
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.77 E-value=0.16 Score=46.93 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998764
No 407
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.75 E-value=0.51 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||++.+..-
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999653
No 408
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.73 E-value=0.12 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988543
No 409
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.69 E-value=0.17 Score=48.24 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
....|+|+|..|+|||||.+.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35689999999999999999887653
No 410
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.68 E-value=0.12 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999988543
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.63 E-value=0.34 Score=50.50 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC-----------CCCcHHHHHHHHHHHh
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ-----------KDFGKRQIMTKIINSV 231 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~-----------~~~~~~~~~~~i~~~~ 231 (883)
..++.|.|.+|+||||+|..+.... -..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 3589999999999999998775542 2334566666665543
No 412
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.53 E-value=0.14 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999987654
No 413
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.47 E-value=0.16 Score=46.53 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccC
Q 038265 192 SVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
+-|+|+|.+|+|||||+.++....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987654
No 414
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.46 E-value=0.068 Score=54.87 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=17.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
+..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998855
No 415
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.46 E-value=0.29 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 358999999999999999999653
No 416
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.44 E-value=0.16 Score=51.82 Aligned_cols=26 Identities=31% Similarity=0.189 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|.|+|+.|+||||||..+....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999997654
No 417
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.42 E-value=0.13 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 418
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.34 E-value=0.11 Score=50.38 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 038265 192 SVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~ 212 (883)
.+++|+|+.|.|||||++.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 389999999999999999875
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.33 E-value=0.14 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999654
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.29 E-value=0.15 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 421
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.22 E-value=0.17 Score=53.44 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+++|+|+.|+||||+++.+..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3467999999999999999988754
No 422
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.21 E-value=0.24 Score=46.82 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999764
No 423
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.17 E-value=0.14 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999988553
No 424
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.16 E-value=0.16 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988654
No 425
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.09 E-value=0.15 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988765
No 426
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.07 E-value=0.27 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
....+++|+|..|+|||||++.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3467999999999999999988854
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.06 E-value=0.25 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356999999999999999998875
No 428
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.03 E-value=0.15 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|+|||||.+.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988543
No 429
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.96 E-value=0.16 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..+++|+|++|+|||||++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998853
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.95 E-value=0.13 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|.|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988543
No 431
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.93 E-value=0.16 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999988654
No 432
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.92 E-value=0.17 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
...++|+|+|.||+||||+|..+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHH
Confidence 457899999999999999997664
No 433
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.92 E-value=0.19 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...++|+|+|.+|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999987743
No 434
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.87 E-value=0.16 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988554
No 435
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.86 E-value=0.17 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998865
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.82 E-value=2 Score=48.73 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4599999999999999999986543
No 437
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.79 E-value=0.16 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.+++|+|+.|+|||||.+.+..-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999988543
No 438
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.76 E-value=0.17 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
-.+++|+|++|+|||||++.+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45999999999999999988754
No 439
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.73 E-value=0.16 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998654
No 440
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.71 E-value=0.53 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||++.+..-
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 358999999999999999988543
No 441
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.67 E-value=0.16 Score=50.07 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44679999999999999999988654
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.66 E-value=0.17 Score=50.56 Aligned_cols=23 Identities=48% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|.|||||++.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988554
No 443
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.65 E-value=0.2 Score=49.31 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...+|+|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999887653
No 444
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.64 E-value=0.17 Score=51.97 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46999999999999999998744
No 445
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.64 E-value=0.18 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|+|||||++.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998865
No 446
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.55 E-value=0.18 Score=46.38 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988754
No 447
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.53 E-value=0.2 Score=57.31 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..+++|+|+.|.|||||++.+..-
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 459999999999999999999654
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.49 E-value=1 Score=56.58 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
...++|+|+.|.|||||++.+...
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CcEEEEEecCCCcHHHHHHHhccc
Confidence 358999999999999999999654
No 449
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.46 E-value=0.17 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999988543
No 450
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.43 E-value=0.65 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..++.|.|.+|+||||||..+..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999987754
No 451
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.40 E-value=0.49 Score=41.68 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=22.6
Q ss_pred EecccCCcccc--ccCccccCCCcccEeecCCCCCCccCCc-cccCCcccCEEEeCCc
Q 038265 587 HLDLSGNRKIK--KLPNSICELQSLQTLNLGDCLELEELPK-DIRYLVSLRMFVVTTK 641 (883)
Q Consensus 587 ~L~l~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~ 641 (883)
.++.+++. +. .+|..+ -++|++|+|++|. +..+|. .+..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 44555443 33 455432 1345566665543 233332 2344444555554444
No 452
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.39 E-value=0.24 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999988764
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.37 E-value=0.18 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999988654
No 454
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.35 E-value=1.1 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..|+|||..|.|||||++.+..-
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 58999999999999999999653
No 455
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.29 E-value=0.2 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999987654
No 456
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.26 E-value=0.22 Score=50.06 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=51.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccCCCC----------cHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHcCCCceEEE
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQKDF----------GKRQIMTKIINSVIGGNHGNLDPDRMQKVLRDSLNGKRYLLV 260 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llv 260 (883)
..+++|+|+.|+|||||++.+.....+. +...+..... .+........+...+...+...+..++=+|+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~-~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK-SIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-SEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc-eeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 4699999999999999998875422000 0000000000 0000000000112234456666666677888
Q ss_pred EeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChHHH
Q 038265 261 MDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA 298 (883)
Q Consensus 261 lDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 298 (883)
+|..- |......+.... ..|.-|++||.+....
T Consensus 104 lDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 104 VGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp ESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred eCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 89884 333333322222 2366788888765543
No 457
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.25 E-value=1.5 Score=45.45 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC-----------CCCcHHHHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ-----------KDFGKRQIMTKIINS 230 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~-----------~~~~~~~~~~~i~~~ 230 (883)
..++.|.|.+|+||||+|..+.... -..+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHH
Confidence 4589999999999999998775432 123455666665544
No 458
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.19 E-value=0.19 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988654
No 459
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.17 E-value=0.19 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999988553
No 460
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.16 E-value=0.27 Score=45.71 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.--|+|+|.+|+|||||+.++...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999988764
No 461
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.15 E-value=0.64 Score=51.94 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=29.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC------------CCCcHHHHHHHHHHHhh
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ------------KDFGKRQIMTKIINSVI 232 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~------------~~~~~~~~~~~i~~~~~ 232 (883)
...++.|.|.+|+||||+|..+.... -..+..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHc
Confidence 34689999999999999997775432 12235566666655443
No 462
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.11 E-value=0.22 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999987754
No 463
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.08 E-value=0.36 Score=48.16 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 175 KIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-+..|+... .+....|.++|++|+|||.+|.++.+.
T Consensus 92 ~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 355666432 123457999999999999999999774
No 464
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.04 E-value=0.2 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 038265 191 VSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
-.+++|+|++|+|||||+..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3599999999999999998774
No 465
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.03 E-value=0.2 Score=47.47 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
--|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999988764
No 466
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.01 E-value=0.19 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+++|+|+.|.|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999988654
No 467
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.00 E-value=0.24 Score=53.87 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
...+|+|+|.+|+||||++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999977754
No 468
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.00 E-value=0.64 Score=50.95 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=28.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC------------CCCcHHHHHHHHHHHh
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ------------KDFGKRQIMTKIINSV 231 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~------------~~~~~~~~~~~i~~~~ 231 (883)
..++.|.|.+|+||||+|..+.... -..+..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHH
Confidence 4589999999999999997765432 1234556666665443
No 469
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.00 E-value=0.2 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
..+++|.|.+|+|||||++.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 45999999999999999987743
No 470
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.93 E-value=0.25 Score=46.18 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.+...|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999988664
No 471
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.92 E-value=0.91 Score=48.90 Aligned_cols=102 Identities=18% Similarity=0.083 Sum_probs=55.0
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHccCCCC---cHHHHHHHHHHHhhCC---CCCCCChHHHHHHHHHHcCCC---ceE
Q 038265 188 SETVSVIPIVGIGGLGKTALAKLVYNDQKDF---GKRQIMTKIINSVIGG---NHGNLDPDRMQKVLRDSLNGK---RYL 258 (883)
Q Consensus 188 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~l~~~l~~k---r~L 258 (883)
....++..|.|.+|.||||+.+...+..... .-.....++.+.+... .............+.+....+ -=+
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~ 237 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKR 237 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCTTTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSE
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhccCCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCE
Confidence 4678999999999999999999887632100 1233334444444311 111222222223333221111 348
Q ss_pred EEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeec
Q 038265 259 LVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTR 293 (883)
Q Consensus 259 lvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 293 (883)
+|+|++.-.+...+..+....+ ..+||+.--
T Consensus 238 liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD 268 (446)
T 3vkw_A 238 LFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGD 268 (446)
T ss_dssp EEEETGGGSCHHHHHHHHHHTT----CSEEEEEEC
T ss_pred EEEeCcccCCHHHHHHHHHhCC----CCEEEEecC
Confidence 9999986555444544444332 257777654
No 472
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.89 E-value=0.52 Score=50.13 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=33.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 164 SDIIGRYEDGEKIIELLMQTSDGESETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
..++|....+.++...+.... ..-..|.|+|.+|+||+++|+.++...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a----~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA----KSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH----TSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhh----ccchhheEEeCCCchHHHHHHHHHHhc
Confidence 457888887777766654321 111246799999999999999997643
No 473
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.86 E-value=0.25 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998765
No 474
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.81 E-value=0.24 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
...++|.++|.+|+||||++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999997665
No 475
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.80 E-value=0.23 Score=45.96 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
--|+|+|.+|+|||||+..+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999988654
No 476
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.76 E-value=0.22 Score=45.81 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..-|+|+|.+|+|||||+..+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988754
No 477
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.76 E-value=0.19 Score=46.25 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-|+|+|.+|+|||||...+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988643
No 478
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.70 E-value=0.23 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988754
No 479
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.66 E-value=0.23 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 038265 192 SVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~ 212 (883)
++|+|.|.||+||||+|..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA 22 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLT 22 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHH
Confidence 578889999999999997664
No 480
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.58 E-value=0.27 Score=46.27 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....-|+|+|.+|+|||||..++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998765
No 481
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.57 E-value=0.36 Score=44.97 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988765
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.52 E-value=0.25 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
-.|.+.|.||+||||+|..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34788999999999998666543
No 483
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.51 E-value=0.47 Score=52.40 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHH
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVY 212 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~ 212 (883)
...++|+|+|.+|+||||++..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999998776
No 484
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.50 E-value=0.34 Score=45.25 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567899999999999999988765
No 485
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.49 E-value=0.23 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.686 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 038265 193 VIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988764
No 486
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.46 E-value=0.24 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
--|+|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988764
No 487
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.42 E-value=0.24 Score=45.52 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999888654
No 488
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.40 E-value=0.28 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998765
No 489
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.40 E-value=0.24 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.--|+|+|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999877654
No 490
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.39 E-value=0.24 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.--|+|+|.+|+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999886653
No 491
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.36 E-value=0.24 Score=45.66 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccC
Q 038265 193 VIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 193 vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
-|+|+|.+|+|||||..++....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999998886543
No 492
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.33 E-value=0.29 Score=45.16 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999888754
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.27 E-value=0.23 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
++|+|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999988764
No 494
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.14 E-value=0.25 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
.--|+|+|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999888654
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.12 E-value=0.19 Score=50.80 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.+...|+|.|..|+||||+|+.+.+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999887764
No 496
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.10 E-value=0.32 Score=45.86 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHcc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYND 214 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~ 214 (883)
..--|+|+|.+|+|||||+..+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999988764
No 497
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.10 E-value=0.24 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 038265 191 VSVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 191 ~~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
-.++.|.|.+|+||||||..+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999977643
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.09 E-value=0.28 Score=47.70 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHccC
Q 038265 189 ETVSVIPIVGIGGLGKTALAKLVYNDQ 215 (883)
Q Consensus 189 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 215 (883)
.....|.|+|.+|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999887654
No 499
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.07 E-value=0.25 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 038265 192 SVIPIVGIGGLGKTALAKLVYN 213 (883)
Q Consensus 192 ~vv~I~G~gGiGKTtLa~~v~~ 213 (883)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998854
No 500
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.06 E-value=0.46 Score=45.64 Aligned_cols=100 Identities=11% Similarity=-0.015 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHccC-----------CCCcHHHHHHHHHHHhhCC--CCCCCChHHHHHHHHHHcCCCc
Q 038265 190 TVSVIPIVGIGGLGKTALAKLVYNDQ-----------KDFGKRQIMTKIINSVIGG--NHGNLDPDRMQKVLRDSLNGKR 256 (883)
Q Consensus 190 ~~~vv~I~G~gGiGKTtLa~~v~~~~-----------~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~l~~kr 256 (883)
...+..++|.-|.||||.+.....+. ...+.+.-...+...+.-. .....+.+ .+.+...++-
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~~~~ 102 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHITEEM 102 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGG----GGGGGCCSSC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHhcCC
Confidence 35799999999999999996654432 1111111111222222100 00011111 2222333333
Q ss_pred eEEEEeCCCCCChhhHHHHHHhcCCCCCCCEEEEeecChH
Q 038265 257 YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 296 (883)
Q Consensus 257 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 296 (883)
-+|++|.+.--+....+.+....+ .|-.||+|.++.+
T Consensus 103 dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 103 DVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp CEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred CEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 499999986554444544443222 3678999998643
Done!