BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038267
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 12/158 (7%)
Query: 141 SVSAQSTLRCL----ARMLDE--GI-----LADTVIHTADGTLKAHKAVLSASSPVFQSM 189
++S Q+T+ + R+ DE G+ D + A +AHKA+L+A SPVF +M
Sbjct: 144 NISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAM 203
Query: 190 FHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKD 249
F H+++E + + + I D+ E ++ ++Y T K + K LL AA+KY + LK
Sbjct: 204 FEHEMEESKKNRVEINDVEPEVFKEMMCFIY-TGKAPNLDKMADDLLAAADKYALERLKV 262
Query: 250 ACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYL 287
CE++L +++ N E L A L+ +LK + ++
Sbjct: 263 MCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 162 DTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYG 221
D + A +AHKA+L+A SPVF +MF H+++E + + + I D+ E ++ ++Y
Sbjct: 27 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY- 85
Query: 222 TIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLK 280
T K + K LL AA+KY + LK CE++L +++ N E L A L+ +LK
Sbjct: 86 TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLK 144
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 160 LADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYL 219
D + A +AHKA+L+A SPVF + F H+ +E + + + I D+ E ++
Sbjct: 34 FTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEPEVFKEXXCFI 93
Query: 220 YGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKL 279
Y T K + K LL AA+KY + LK CE++L +++ N E L A L+ +L
Sbjct: 94 Y-TGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVENAAEILILADLHSADQL 152
Query: 280 KKGCLTYL 287
K + ++
Sbjct: 153 KTQAVDFI 160
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 144 AQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIY 203
A L L R+ IL D VI + +AHK VL A S +F S+F LK S
Sbjct: 13 ASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL 72
Query: 204 IEDMSVESCMALLSYLYGT 222
+++ E LL ++Y +
Sbjct: 73 DPEINPEGFNILLDFMYTS 91
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 144 AQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIY 203
A L L R+ IL D VI + +AHK VL A S +F S+F LK S
Sbjct: 16 ASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINL 75
Query: 204 IEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEE 253
+++ E LL ++Y T + + +A++ A + + D C +
Sbjct: 76 DPEINPEGFCILLDFMY-TSRLNLREGNIMAVMATAMYLQMEHVVDTCRK 124
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 144 AQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHD 193
S L CL +G+ D + KAH+AVL+ASS F+ +F++
Sbjct: 17 GNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS 66
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 172 LKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVE------SCMALLSYLY-GTIK 224
+AH++VL+A++ F + E S + + S E + A++ Y+Y G I+
Sbjct: 65 FRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIR 124
Query: 225 QEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKL 279
H + L A+++ + LK+ C E L + ++ N + A +Y LS+L
Sbjct: 125 VSTGSVHEV--LELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQL 177
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 139 MQSVSAQSTLRCLA-RMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEK 197
+Q+ S + L C A +M G L D VI AH+ VL+ +S +F+ +FH +
Sbjct: 5 LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH-----R 59
Query: 198 ESSTIYIEDMSVESCMALLSYLYGTIKQ 225
S ++ +S ++ +L Y Y Q
Sbjct: 60 NSQHYTLDFLSPKTFQQILEYAYTATLQ 87
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 139 MQSVSAQSTLRCLA-RMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEK 197
+Q+ S + L C A +M G L D VI AH+ VL+ +S +F+ +FH +
Sbjct: 6 LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH-----R 60
Query: 198 ESSTIYIEDMSVESCMALLSYLYGTIKQ 225
S ++ +S ++ +L Y Y Q
Sbjct: 61 NSQHYTLDFLSPKTFQQILEYAYTATLQ 88
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 157 EGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALL 216
+G+L D VI H++VL+A S F+ +F + + I+ +S E+ AL+
Sbjct: 32 QGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM 91
Query: 217 SYLY 220
+ Y
Sbjct: 92 DFAY 95
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 157 EGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALL 216
+G+L D VI H++VL+A S F+ +F + + I+ +S E+ AL+
Sbjct: 22 QGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM 81
Query: 217 SYLY 220
+ Y
Sbjct: 82 DFAY 85
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 146 STLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMF 190
S L L G+ D + D +AHK +LSASS F +F
Sbjct: 19 SLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF 63
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 146 STLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMF 190
S L L G+ D + D +AHK +LSASS F +F
Sbjct: 17 SLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF 61
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 172 LKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVE------SCMALLSYLY-GTIK 224
+AH++VL+A++ F + E S + S E + A++ Y Y G I+
Sbjct: 47 FRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIR 106
Query: 225 QEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKL 279
H + L A+++ + LK+ C E L + ++ N + A Y LS+L
Sbjct: 107 VSTGSVHEV--LELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXYTLSQL 159
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 144 AQSTLRCLARMLDEGILADTVIHTADGT-LKAHKAVLSASSPVFQSMF 190
+Q L L + G+L D DG KAHKAVL+A S F+ +F
Sbjct: 9 SQHVLEQLNQQRQLGLLCDCTF-VVDGVHFKAHKAVLAACSEYFKMLF 55
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 144 AQSTLRCLARMLDEGILADTVIHTADGT-LKAHKAVLSASSPVFQSMF 190
+Q L L + G+L D DG KAHKAVL+A S F+ +F
Sbjct: 11 SQHVLEQLNQQRQLGLLCDCTF-VVDGVHFKAHKAVLAACSEYFKMLF 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,751,030
Number of Sequences: 62578
Number of extensions: 339139
Number of successful extensions: 701
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 16
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)