Query 038267
Match_columns 295
No_of_seqs 239 out of 2103
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 4.8E-28 1E-32 227.3 15.3 151 141-294 6-159 (557)
2 PHA02790 Kelch-like protein; P 99.9 8E-27 1.7E-31 216.0 12.7 143 148-294 10-156 (480)
3 KOG4441 Proteins containing BT 99.9 2.8E-26 6.1E-31 214.8 13.9 152 141-294 17-170 (571)
4 PHA03098 kelch-like protein; P 99.9 2.9E-25 6.3E-30 209.1 13.1 132 156-293 5-140 (534)
5 KOG4350 Uncharacterized conser 99.9 1.6E-24 3.4E-29 185.5 8.1 145 145-289 29-175 (620)
6 PF00651 BTB: BTB/POZ domain; 99.8 2.8E-20 6E-25 138.6 8.4 107 151-258 1-110 (111)
7 KOG4591 Uncharacterized conser 99.8 7.2E-19 1.6E-23 137.4 10.2 148 143-293 49-201 (280)
8 KOG2075 Topoisomerase TOP1-int 99.8 2.4E-18 5.1E-23 150.9 13.1 149 142-292 96-252 (521)
9 cd03774 MATH_SPOP Speckle-type 99.8 3.3E-18 7.1E-23 132.6 10.6 111 8-119 2-137 (139)
10 cd03775 MATH_Ubp21p Ubiquitin- 99.8 4.6E-18 1E-22 130.8 10.5 105 12-116 2-133 (134)
11 cd03772 MATH_HAUSP Herpesvirus 99.8 1.5E-17 3.2E-22 128.6 12.4 109 10-118 2-132 (137)
12 smart00225 BTB Broad-Complex, 99.7 3.5E-17 7.7E-22 116.4 7.3 89 162-252 1-90 (90)
13 KOG4682 Uncharacterized conser 99.7 3.8E-16 8.3E-21 134.2 12.8 136 151-289 60-200 (488)
14 cd03776 MATH_TRAF6 Tumor Necro 99.7 1.8E-16 4E-21 123.9 8.7 106 11-116 1-146 (147)
15 cd03773 MATH_TRIM37 Tripartite 99.7 6.2E-16 1.3E-20 118.8 9.4 105 10-116 4-129 (132)
16 cd00270 MATH_TRAF_C Tumor Necr 99.7 8.2E-16 1.8E-20 120.6 10.2 106 11-116 1-148 (149)
17 KOG0783 Uncharacterized conser 99.6 7.6E-16 1.6E-20 142.5 8.8 128 162-289 712-845 (1267)
18 cd03777 MATH_TRAF3 Tumor Necro 99.6 1.3E-15 2.7E-20 122.5 9.1 110 7-116 35-183 (186)
19 cd03781 MATH_TRAF4 Tumor Necro 99.6 2.8E-15 6E-20 117.9 9.8 69 11-79 1-89 (154)
20 cd00121 MATH MATH (meprin and 99.6 2.4E-14 5.3E-19 108.4 11.3 105 11-116 1-125 (126)
21 cd03780 MATH_TRAF5 Tumor Necro 99.6 1.9E-14 4.1E-19 111.7 9.4 106 11-116 1-147 (148)
22 KOG1987 Speckle-type POZ prote 99.5 3.8E-14 8.2E-19 123.9 11.0 219 15-289 8-231 (297)
23 cd03771 MATH_Meprin Meprin fam 99.5 4.7E-14 1E-18 111.0 9.6 67 11-77 2-85 (167)
24 cd03779 MATH_TRAF1 Tumor Necro 99.5 1.1E-13 2.4E-18 106.9 9.9 105 11-116 1-146 (147)
25 smart00061 MATH meprin and TRA 99.4 5.9E-13 1.3E-17 95.8 8.9 68 13-81 2-75 (95)
26 PF00917 MATH: MATH domain; I 99.3 4.7E-12 1E-16 95.1 8.5 99 17-117 1-118 (119)
27 cd03778 MATH_TRAF2 Tumor Necro 99.2 1.1E-10 2.3E-15 91.4 10.0 109 7-116 15-163 (164)
28 COG5077 Ubiquitin carboxyl-ter 99.0 2E-10 4.3E-15 106.4 5.1 110 9-120 37-172 (1089)
29 KOG0783 Uncharacterized conser 98.9 5.1E-09 1.1E-13 98.1 8.8 82 141-222 535-632 (1267)
30 KOG0511 Ankyrin repeat protein 98.4 4.1E-07 9E-12 78.6 5.8 118 170-289 301-428 (516)
31 cd03783 MATH_Meprin_Alpha Mepr 98.3 3.6E-06 7.8E-11 65.8 8.3 68 11-78 2-88 (167)
32 KOG2838 Uncharacterized conser 98.3 6.4E-07 1.4E-11 74.2 3.5 121 146-266 221-395 (401)
33 KOG2716 Polymerase delta-inter 98.2 9.1E-06 2E-10 67.0 9.5 95 163-258 7-104 (230)
34 KOG2838 Uncharacterized conser 98.2 1.3E-06 2.9E-11 72.4 3.7 104 143-246 113-220 (401)
35 PF02214 BTB_2: BTB/POZ domain 98.0 8.1E-06 1.8E-10 58.5 3.9 88 163-251 1-94 (94)
36 cd03782 MATH_Meprin_Beta Mepri 97.8 9.9E-05 2.2E-09 57.6 8.0 68 11-78 2-86 (167)
37 KOG3473 RNA polymerase II tran 97.6 0.00043 9.2E-09 48.3 7.7 81 163-244 19-112 (112)
38 PF03931 Skp1_POZ: Skp1 family 96.8 0.0051 1.1E-07 40.2 5.8 55 163-220 3-58 (62)
39 smart00512 Skp1 Found in Skp1 96.8 0.0051 1.1E-07 44.8 6.3 57 163-220 4-62 (104)
40 PF11822 DUF3342: Domain of un 96.7 0.0042 9E-08 53.7 5.9 119 163-283 1-138 (317)
41 KOG1724 SCF ubiquitin ligase, 96.5 0.011 2.4E-07 46.4 6.9 99 168-267 13-135 (162)
42 KOG1665 AFH1-interacting prote 96.0 0.031 6.7E-07 45.6 7.0 92 162-253 10-105 (302)
43 KOG0511 Ankyrin repeat protein 95.8 0.0046 9.9E-08 54.2 1.9 101 149-252 135-239 (516)
44 KOG2714 SETA binding protein S 95.5 0.051 1.1E-06 48.6 7.2 85 163-249 13-102 (465)
45 KOG1778 CREB binding protein/P 94.6 0.017 3.7E-07 50.4 1.6 127 163-289 29-156 (319)
46 COG5201 SKP1 SCF ubiquitin lig 93.5 0.69 1.5E-05 34.4 7.8 100 163-265 4-128 (158)
47 KOG2715 Uncharacterized conser 92.3 2.2 4.7E-05 33.5 9.4 96 161-258 21-121 (210)
48 PF01466 Skp1: Skp1 family, di 91.9 0.41 9E-06 32.7 4.7 47 230-276 14-63 (78)
49 KOG2723 Uncharacterized conser 84.8 5.1 0.00011 33.2 7.2 93 160-253 7-104 (221)
50 KOG1863 Ubiquitin carboxyl-ter 84.3 1 2.2E-05 46.5 3.7 104 12-117 28-150 (1093)
51 PF09593 Pathogen_betaC1: Beta 81.7 5.3 0.00011 29.5 5.6 74 168-245 20-96 (117)
52 PF00651 BTB: BTB/POZ domain; 75.7 5.4 0.00012 28.5 4.3 29 261-289 81-109 (111)
53 KOG3840 Uncharaterized conserv 75.6 18 0.00038 31.5 7.6 87 159-245 94-185 (438)
54 PF07707 BACK: BTB And C-termi 60.6 15 0.00032 25.9 3.8 26 233-258 2-27 (103)
55 KOG2075 Topoisomerase TOP1-int 55.0 15 0.00033 33.9 3.6 31 259-289 185-215 (521)
56 KOG4350 Uncharacterized conser 53.1 26 0.00057 31.8 4.7 32 258-289 112-143 (620)
57 PHA03098 kelch-like protein; P 48.9 21 0.00046 33.9 3.8 32 258-289 72-103 (534)
58 smart00875 BACK BTB And C-term 46.2 28 0.0006 24.1 3.3 25 234-258 3-27 (101)
59 PHA02790 Kelch-like protein; P 45.5 49 0.0011 31.0 5.6 29 230-258 123-151 (480)
60 KOG0297 TNF receptor-associate 43.1 20 0.00043 32.7 2.5 69 8-76 277-365 (391)
61 PHA02713 hypothetical protein; 42.5 47 0.001 31.9 5.1 32 258-289 90-121 (557)
62 PF11822 DUF3342: Domain of un 33.8 13 0.00028 32.6 -0.1 37 258-294 71-108 (317)
63 KOG4441 Proteins containing BT 27.6 1.3E+02 0.0027 29.2 5.3 32 258-289 101-132 (571)
64 KOG4682 Uncharacterized conser 27.2 63 0.0014 29.4 2.9 29 230-258 173-201 (488)
65 TIGR02425 decarb_PcaC 4-carbox 27.1 2.7E+02 0.0058 20.7 10.2 87 203-289 27-117 (123)
66 PF02519 Auxin_inducible: Auxi 24.8 2.4E+02 0.0052 20.2 5.1 55 162-219 40-99 (100)
67 PF01466 Skp1: Skp1 family, di 23.9 1.8E+02 0.0038 19.5 4.2 35 253-289 7-41 (78)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=4.8e-28 Score=227.29 Aligned_cols=151 Identities=19% Similarity=0.323 Sum_probs=141.1
Q ss_pred cCChHHHHHHHHHHhhcCCcccEEEEeC-CeEEEeEeeeeccCCHHHHHhhcCccCcCc-cceEEECCCCHHHHHHHHHH
Q 038267 141 SVSAQSTLRCLARMLDEGILADTVIHTA-DGTLKAHKAVLSASSPVFQSMFHHDLKEKE-SSTIYIEDMSVESCMALLSY 218 (295)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~~~Dv~l~v~-~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~-~~~i~l~~~~~~~f~~~L~~ 218 (295)
..|+..+++.|.+|+.++.+|||+|.++ |++|+|||.|||++|+||++||.++|+|+. +++|.|+++++++|+.+|+|
T Consensus 6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y 85 (557)
T PHA02713 6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQY 85 (557)
T ss_pred hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHH
Confidence 3567889999999999999999999998 899999999999999999999999999864 78999999999999999999
Q ss_pred HhCCCcccccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh-hcccc
Q 038267 219 LYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD-FGKIY 294 (295)
Q Consensus 219 lY~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~-~~~i~ 294 (295)
+||+. ++. +++++||.+|++|+++.|++.|++||.+.++++||+.++.+|..+.+..|.+.|.+||.+ |.+|.
T Consensus 86 ~Yt~~-i~~--~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~ 159 (557)
T PHA02713 86 LYNRH-ISS--MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLI 159 (557)
T ss_pred hcCCC-CCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 99874 444 899999999999999999999999999999999999999999999999999999999999 88764
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=8e-27 Score=215.98 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=129.6
Q ss_pred HHHHHHHhhcCCcccEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEE--CCCCHHHHHHHHHHHhCC-Cc
Q 038267 148 LRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYI--EDMSVESCMALLSYLYGT-IK 224 (295)
Q Consensus 148 ~~~~~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~L~~lY~~-~~ 224 (295)
.+++-.+..++.+|||++.+| ++|+|||+|||+.||||++||.++|+|+.+ +|.+ .++++++++.+|+|+||+ +.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 456667888899999877655 589999999999999999999999999954 5665 489999999999999975 66
Q ss_pred ccccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh-hcccc
Q 038267 225 QEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD-FGKIY 294 (295)
Q Consensus 225 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~-~~~i~ 294 (295)
++. +|+++||.+|++|+++.+++.|++||.+.++++||+.++.+|+.|++..|++.+.+||.+ |.+|.
T Consensus 88 it~--~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~ 156 (480)
T PHA02790 88 IDS--HNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELE 156 (480)
T ss_pred Eec--ccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHh
Confidence 666 899999999999999999999999999999999999999999999999999999999999 88774
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=2.8e-26 Score=214.81 Aligned_cols=152 Identities=29% Similarity=0.437 Sum_probs=144.7
Q ss_pred cCChHHHHHHHHHHhhcCCcccEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHh
Q 038267 141 SVSAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLY 220 (295)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY 220 (295)
..|+..+++.+..++..+.+|||++.+++++|+|||.|||+.||||++||.++++|+.+.+|.|.++++..++.+|+|+|
T Consensus 17 ~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Y 96 (571)
T KOG4441|consen 17 PSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAY 96 (571)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcccccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh-hcccc
Q 038267 221 GT-IKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD-FGKIY 294 (295)
Q Consensus 221 ~~-~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~-~~~i~ 294 (295)
|+ +.+++ +++++||.+|+.||++.+.+.|.+||.+.++++||+.+..+|+.|++..|.+.+..|+.+ |.++.
T Consensus 97 t~~i~i~~--~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~ 170 (571)
T KOG4441|consen 97 TGKLEISE--DNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVS 170 (571)
T ss_pred cceEEech--HhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 85 66666 899999999999999999999999999999999999999999999999999999999999 88763
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=2.9e-25 Score=209.10 Aligned_cols=132 Identities=24% Similarity=0.395 Sum_probs=123.6
Q ss_pred hcCCcccEEEEe--CCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHhCC-CcccccHHHH
Q 038267 156 DEGILADTVIHT--ADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGT-IKQEDFWKHR 232 (295)
Q Consensus 156 ~~~~~~Dv~l~v--~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY~~-~~~~~~~~~~ 232 (295)
.++.+|||+|.+ +|++|+|||.||+++|+||++||.++|+ +.+|.|++ ++++|+.+|+|+||+ +.++. +++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~--~~~ 78 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITS--NNV 78 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcH--HHH
Confidence 378899999998 9999999999999999999999999887 67899999 999999999999986 55555 889
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh-hccc
Q 038267 233 LALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD-FGKI 293 (295)
Q Consensus 233 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~-~~~i 293 (295)
.+||.+|++|+++.|+..|+++|.+.++.+||+.++.+|..|++..|++.|.+||.+ |.++
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v 140 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELI 140 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 7665
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=185.47 Aligned_cols=145 Identities=24% Similarity=0.371 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhhcCCcccEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHhCC-C
Q 038267 145 QSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGT-I 223 (295)
Q Consensus 145 ~~~~~~~~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY~~-~ 223 (295)
..+.++++.++-+++++||+|++++++|+|||.|||+||.|||+|+.++|+|+.+..|+|++.+.++|+.+|+|||++ +
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 345788999999999999999999999999999999999999999999999999999999999999999999999975 3
Q ss_pred ccc-ccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 224 KQE-DFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 224 ~~~-~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
... ...+...+.|.+|.+|++..|.....+||++.+..+|++.++..|..|++.+|...|+.|+-+
T Consensus 109 ~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDr 175 (620)
T KOG4350|consen 109 DLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDR 175 (620)
T ss_pred ecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhc
Confidence 222 223778899999999999999999999999999999999999999999999999999999976
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.82 E-value=2.8e-20 Score=138.60 Aligned_cols=107 Identities=33% Similarity=0.502 Sum_probs=92.2
Q ss_pred HHHHhhcCCcccEEEEeC-CeEEEeEeeeeccCCHHHHHhhcCc-cCcCccceEEECCCCHHHHHHHHHHHhCC-Ccccc
Q 038267 151 LARMLDEGILADTVIHTA-DGTLKAHKAVLSASSPVFQSMFHHD-LKEKESSTIYIEDMSVESCMALLSYLYGT-IKQED 227 (295)
Q Consensus 151 ~~~l~~~~~~~Dv~l~v~-~~~~~~hk~iLa~~S~~F~~~f~~~-~~e~~~~~i~l~~~~~~~f~~~L~~lY~~-~~~~~ 227 (295)
|+++++++.++|++|.++ +++|+|||.+|+++||||+.||.++ +.+....+|.++++++++|+.+|+|+|++ ...+
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~- 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN- 79 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC-
Confidence 467889999999999999 7999999999999999999999988 56666678999999999999999999975 4343
Q ss_pred cHHHHHHHHHHHhhcChHHHHHHHHHHHHhc
Q 038267 228 FWKHRLALLGAANKYDIADLKDACEESLLED 258 (295)
Q Consensus 228 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 258 (295)
..+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 1278999999999999999999999998764
No 7
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.79 E-value=7.2e-19 Score=137.38 Aligned_cols=148 Identities=20% Similarity=0.259 Sum_probs=128.0
Q ss_pred ChHHHHHHHHHHhhcCCcccEEEEeC---CeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHH
Q 038267 143 SAQSTLRCLARMLDEGILADTVIHTA---DGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYL 219 (295)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~Dv~l~v~---~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~l 219 (295)
-++.++.-...+++.+++||++|.++ ++.++|||.|||+||.+.+-.- + ......+..++|+++++|...++||
T Consensus 49 F~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN-~--~dekse~~~~dDad~Ea~~t~iRWI 125 (280)
T KOG4591|consen 49 FISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFAN-G--GDEKSEELDLDDADFEAFHTAIRWI 125 (280)
T ss_pred HHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhcc-C--CCcchhhhcccccCHHHHHHhheee
Confidence 35778888899999999999999998 4689999999999999875222 2 1333567889999999999999999
Q ss_pred hCC-CcccccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh-hccc
Q 038267 220 YGT-IKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD-FGKI 293 (295)
Q Consensus 220 Y~~-~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~-~~~i 293 (295)
||+ +........+.++.++|++|+++-|++.|++-+...+.++||+.++++|++.++.+|.+.|.+.|+. |+++
T Consensus 126 YTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL 201 (280)
T KOG4591|consen 126 YTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL 201 (280)
T ss_pred eccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 985 4444433788899999999999999999999999999999999999999999999999999999988 7654
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.78 E-value=2.4e-18 Score=150.86 Aligned_cols=149 Identities=27% Similarity=0.398 Sum_probs=132.6
Q ss_pred CChHHHHHHHHHHhhcCCcccEEEEeCC-----eEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHH
Q 038267 142 VSAQSTLRCLARMLDEGILADTVIHTAD-----GTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALL 216 (295)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~~~Dv~l~v~~-----~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L 216 (295)
.+..++.+....+++++..+|+.|+|++ ++++|||.+||..|.+|.+||++++.+....+|.++|++|.+|..+|
T Consensus 96 ~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L 175 (521)
T KOG2075|consen 96 AQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFL 175 (521)
T ss_pred cchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHH
Confidence 3446677778889999999999999984 59999999999999999999999999998889999999999999999
Q ss_pred HHHhCC-CcccccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHH-HHHcCcHHHHHHHHHHHHh-hcc
Q 038267 217 SYLYGT-IKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQE-AWLYQLSKLKKGCLTYLFD-FGK 292 (295)
Q Consensus 217 ~~lY~~-~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~-A~~~~~~~L~~~~~~~i~~-~~~ 292 (295)
+|||++ +.... ++++.+|.+|++|.++.|.+.|.++|...+...|.+..+-- |..++-++|...|++-|.. +..
T Consensus 176 ~flYsdev~~~~--dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~ 252 (521)
T KOG2075|consen 176 RFLYSDEVKLAA--DTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFED 252 (521)
T ss_pred HHHhcchhhhhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHh
Confidence 999986 44444 89999999999999999999999999998888887766555 9999999999999999976 543
No 9
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.77 E-value=3.3e-18 Score=132.60 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=82.5
Q ss_pred eeeeeEEEEEeecC-----CCCccccCCceecce---eeEEEEEeCCe-----eEEEEeecCCCCCCCCCceEEEEEEEE
Q 038267 8 TISRLAQWRIDNFG-----PCSYKKSDPFKIGIW---NWHLSVEKNRY-----LYVRLFPEPSRLSKEQPPFARFIIRVS 74 (295)
Q Consensus 8 ~~~~~~~w~I~~~~-----~~~~~~S~~F~~gg~---~W~l~~yp~g~-----~~vsl~l~~~~~~~~~~v~a~f~~~l~ 74 (295)
+.+.+|.|+|+||+ .++++.|++|.+||+ +|+|++||+|. ++|||||.+.+. +.+.+.|+|+|+|+
T Consensus 2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~-~~~~v~a~f~~~l~ 80 (139)
T cd03774 2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-PKSEVRAKFKFSIL 80 (139)
T ss_pred ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC-CCCcEEEEEEEEEE
Confidence 56889999999997 377899999999995 99999999983 489999987542 34679999999999
Q ss_pred eCCCCCeeeeeeccceecccCCceeee-e-----------eeeeeceeEEEeeeeee
Q 038267 75 NGGANRRLYISQVNERLLRTCEDFVWY-V-----------DCTIHGRFIVDVEFLEL 119 (295)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~w~-~-----------~~~~~~~l~ve~~v~~~ 119 (295)
|+++.............+....+|||. + ++++||.++|+|+|.++
T Consensus 81 n~~~~~~~~~~~~~~~~f~~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~ 137 (139)
T cd03774 81 NAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 137 (139)
T ss_pred ecCCCeeeeecccCcEeCCCCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEE
Confidence 998765332222111223333443333 1 36789999999998764
No 10
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.76 E-value=4.6e-18 Score=130.80 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=79.1
Q ss_pred eEEEEEeecC-CCCccccCCceecceeeEEEEEeCCe---eEEEEeecCCCC-------CCCCCceEEEEEEEEeCCCCC
Q 038267 12 LAQWRIDNFG-PCSYKKSDPFKIGIWNWHLSVEKNRY---LYVRLFPEPSRL-------SKEQPPFARFIIRVSNGGANR 80 (295)
Q Consensus 12 ~~~w~I~~~~-~~~~~~S~~F~~gg~~W~l~~yp~g~---~~vsl~l~~~~~-------~~~~~v~a~f~~~l~~~~~~~ 80 (295)
+|+|+|+||+ .++.+.||+|.||||+|+|.+||+|. .+|||||.+.+. +.+|.+.|+|+|+|+|+.++.
T Consensus 2 ~f~w~I~~fS~~~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~ 81 (134)
T cd03775 2 SFTWRIKNWSELEKKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPS 81 (134)
T ss_pred cEEEEECCcccCCcceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCc
Confidence 5899999996 47789999999999999999999993 589999987442 347889999999999997665
Q ss_pred eeeeeeccceecccCCceeee-e---------------eeeeeceeEEEeee
Q 038267 81 RLYISQVNERLLRTCEDFVWY-V---------------DCTIHGRFIVDVEF 116 (295)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~w~-~---------------~~~~~~~l~ve~~v 116 (295)
.+......+.|.....+|||. + ++++||+++|++.|
T Consensus 82 ~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 82 IQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred cceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 444333333343333443433 1 37889999999875
No 11
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.75 E-value=1.5e-17 Score=128.60 Aligned_cols=109 Identities=14% Similarity=0.197 Sum_probs=79.9
Q ss_pred eeeEEEEEeecCC-CCccccCCceecceeeEEEEEeCCe-------eEEEEeecCCCC--CCCCCceEEEEEEEEeCCCC
Q 038267 10 SRLAQWRIDNFGP-CSYKKSDPFKIGIWNWHLSVEKNRY-------LYVRLFPEPSRL--SKEQPPFARFIIRVSNGGAN 79 (295)
Q Consensus 10 ~~~~~w~I~~~~~-~~~~~S~~F~~gg~~W~l~~yp~g~-------~~vsl~l~~~~~--~~~~~v~a~f~~~l~~~~~~ 79 (295)
.++|.|+|+||+. ++.+.||.|.+||++|+|++||+|. .++++||.+... ...|.+.|+|+|+|+|+++.
T Consensus 2 ~~~~~~~I~~~S~l~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~~ 81 (137)
T cd03772 2 EATFSFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKDD 81 (137)
T ss_pred CcEEEEEECCcccCCCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCCC
Confidence 4789999999964 6789999999999999999999881 467777665332 34699999999999999865
Q ss_pred CeeeeeeccceecccCCceeee-------e-----eeeeeceeEEEeeeee
Q 038267 80 RRLYISQVNERLLRTCEDFVWY-------V-----DCTIHGRFIVDVEFLE 118 (295)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~w~-------~-----~~~~~~~l~ve~~v~~ 118 (295)
.........+.|.+....+||. + +|+++|.++|||+|++
T Consensus 82 ~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~ 132 (137)
T cd03772 82 EPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA 132 (137)
T ss_pred cccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence 4333323222332333444442 1 4889999999999743
No 12
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.70 E-value=3.5e-17 Score=116.41 Aligned_cols=89 Identities=38% Similarity=0.614 Sum_probs=80.9
Q ss_pred cEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHhCC-CcccccHHHHHHHHHHHh
Q 038267 162 DTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGT-IKQEDFWKHRLALLGAAN 240 (295)
Q Consensus 162 Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY~~-~~~~~~~~~~~~ll~~A~ 240 (295)
|+++.++|++|++||.+|+++|+||+.||.+++.+.....+.+++.+++.|+.+|+|+|++ ..... .++..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~--~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE--ENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH--HHHHHHHHHHH
Confidence 7899999999999999999999999999998888777889999999999999999999985 33333 58899999999
Q ss_pred hcChHHHHHHHH
Q 038267 241 KYDIADLKDACE 252 (295)
Q Consensus 241 ~~~~~~l~~~c~ 252 (295)
+|+++.|+..|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999999884
No 13
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.69 E-value=3.8e-16 Score=134.18 Aligned_cols=136 Identities=24% Similarity=0.376 Sum_probs=126.5
Q ss_pred HHHHhhcCCcccEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEEC----CCCHHHHHHHHHHHhC-CCcc
Q 038267 151 LARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIE----DMSVESCMALLSYLYG-TIKQ 225 (295)
Q Consensus 151 ~~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~----~~~~~~f~~~L~~lY~-~~~~ 225 (295)
+..++.++.-|||.+.+-|++.+.||..|. +|+||++||+|-++|++++.|.|+ .|+..++..++.-+|. ++.+
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 567888999999999999999999999999 999999999999999999977764 5899999999999996 5655
Q ss_pred cccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 226 EDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 226 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
.. +.+..+|++|..++++.|.+.|.+.+++.+++.+++..++.|.+|+...+++.|++.+..
T Consensus 139 ~l--~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~ 200 (488)
T KOG4682|consen 139 KL--SDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLN 200 (488)
T ss_pred cH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 55 789999999999999999999999999999999999999999999999999999999876
No 14
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.67 E-value=1.8e-16 Score=123.90 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=75.1
Q ss_pred eeEEEEEeecC-------CCCc--cccCCcee--cceeeEEEEEeCCe-----eEEEEeecCCCCC----CCCCceEEEE
Q 038267 11 RLAQWRIDNFG-------PCSY--KKSDPFKI--GIWNWHLSVEKNRY-----LYVRLFPEPSRLS----KEQPPFARFI 70 (295)
Q Consensus 11 ~~~~w~I~~~~-------~~~~--~~S~~F~~--gg~~W~l~~yp~g~-----~~vsl~l~~~~~~----~~~~v~a~f~ 70 (295)
|+|.|+|.||+ .|+. +.||+|.+ |||+|+|++||+|. .+||+||.+.... ..|++.|+|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 68999999985 3553 88999985 79999999999983 4899998875432 3589999999
Q ss_pred EEEEeCCCCCeeeee---e-ccceecc------cCCceeee-e---------eeeeeceeEEEeee
Q 038267 71 IRVSNGGANRRLYIS---Q-VNERLLR------TCEDFVWY-V---------DCTIHGRFIVDVEF 116 (295)
Q Consensus 71 ~~l~~~~~~~~~~~~---~-~~~~~~~------~~~~~~w~-~---------~~~~~~~l~ve~~v 116 (295)
|+|++++++...... . .....|. +...|||. + +|+.||+++|+|+|
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V 146 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEV 146 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEE
Confidence 999999875433211 1 1111222 12333433 1 37889999999986
No 15
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.65 E-value=6.2e-16 Score=118.80 Aligned_cols=105 Identities=12% Similarity=0.187 Sum_probs=77.8
Q ss_pred eeeEEEEEeecC----CCCccccCCceecceeeEEEEEeCCe-----eEEEEeecCCCCCCCCCceEEEEEEEEeCCCCC
Q 038267 10 SRLAQWRIDNFG----PCSYKKSDPFKIGIWNWHLSVEKNRY-----LYVRLFPEPSRLSKEQPPFARFIIRVSNGGANR 80 (295)
Q Consensus 10 ~~~~~w~I~~~~----~~~~~~S~~F~~gg~~W~l~~yp~g~-----~~vsl~l~~~~~~~~~~v~a~f~~~l~~~~~~~ 80 (295)
.++++|+|.||+ .++++.|++|.+||++|+|++||+|. .++||||.+.+. ..|.+.++|+++|+|+.++.
T Consensus 4 ~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~-~~~~~~~~~~l~llnq~~~~ 82 (132)
T cd03773 4 YDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG-LGEASKYEYRVEMVHQANPT 82 (132)
T ss_pred CcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC-CCCceeEEEEEEEEcCCCCc
Confidence 467999999997 57789999999999999999999993 489999987552 34678889999999985443
Q ss_pred eeeeeeccceecccCCceeee-e---------eeeee--ceeEEEeee
Q 038267 81 RLYISQVNERLLRTCEDFVWY-V---------DCTIH--GRFIVDVEF 116 (295)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~w~-~---------~~~~~--~~l~ve~~v 116 (295)
.+...... +.+....+|||. + +|+.+ |+++|+|.|
T Consensus 83 ~~~~~~~~-~~f~~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v 129 (132)
T cd03773 83 KNIKREFA-SDFEVGECWGYNRFFRLDLLINEGYLLPENDTLILRFSV 129 (132)
T ss_pred cceEEecc-ccccCCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEE
Confidence 33332222 233333444443 1 47888 999999986
No 16
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.65 E-value=8.2e-16 Score=120.65 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=76.2
Q ss_pred eeEEEEEeecC---------CCCccccCCceec--ceeeEEEEEeCCe-----eEEEEeecCCCC----CCCCCceEEEE
Q 038267 11 RLAQWRIDNFG---------PCSYKKSDPFKIG--IWNWHLSVEKNRY-----LYVRLFPEPSRL----SKEQPPFARFI 70 (295)
Q Consensus 11 ~~~~w~I~~~~---------~~~~~~S~~F~~g--g~~W~l~~yp~g~-----~~vsl~l~~~~~----~~~~~v~a~f~ 70 (295)
|+|+|+|.||+ .++++.||.|.+| ||+|+|++||+|. .+|||||.+.+. ...|++.|+|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 68999999984 2568999999999 9999999999984 489999887443 24589999999
Q ss_pred EEEEeCCCC--Ceeeeee-----ccceec--c---cCCceeeee----------eeeeeceeEEEeee
Q 038267 71 IRVSNGGAN--RRLYISQ-----VNERLL--R---TCEDFVWYV----------DCTIHGRFIVDVEF 116 (295)
Q Consensus 71 ~~l~~~~~~--~~~~~~~-----~~~~~~--~---~~~~~~w~~----------~~~~~~~l~ve~~v 116 (295)
|+|+|+.++ .+..... ....|- + ...+|||.- +|++||+++|+|+|
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 999999874 2221111 011111 1 224444431 38889999999986
No 17
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.63 E-value=7.6e-16 Score=142.52 Aligned_cols=128 Identities=33% Similarity=0.457 Sum_probs=110.3
Q ss_pred cEEEEe-CCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHhCCC-----cccccHHHHHHH
Q 038267 162 DTVIHT-ADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTI-----KQEDFWKHRLAL 235 (295)
Q Consensus 162 Dv~l~v-~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY~~~-----~~~~~~~~~~~l 235 (295)
|+.+.. +|+.++|||++|++|++||..||..-+.|+..-.+.+-.++.+.++.+|+|+|+.. ......+.+-.+
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~i 791 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEI 791 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHH
Confidence 555555 55569999999999999999999888888887566666667999999999999531 111123678899
Q ss_pred HHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 236 LGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 236 l~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
|.+||.|-+.+|+..|+..|.+.++..++.+++++|..|++.+|+..|++||+.
T Consensus 792 l~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~ 845 (1267)
T KOG0783|consen 792 LSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICH 845 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987
No 18
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.63 E-value=1.3e-15 Score=122.47 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=78.8
Q ss_pred ceeeeeEEEEEeecC-------CCC--ccccCCceec--ceeeEEEEEeCCe-----eEEEEeecCCCCC----CCCCce
Q 038267 7 ETISRLAQWRIDNFG-------PCS--YKKSDPFKIG--IWNWHLSVEKNRY-----LYVRLFPEPSRLS----KEQPPF 66 (295)
Q Consensus 7 ~~~~~~~~w~I~~~~-------~~~--~~~S~~F~~g--g~~W~l~~yp~g~-----~~vsl~l~~~~~~----~~~~v~ 66 (295)
...+|+|.|+|.||+ .|+ ++.||+|.+| ||+|+|++||||. .+||+|+.+.... -.|++.
T Consensus 35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCcee
Confidence 445799999999985 355 7999999999 9999999999993 3899998885522 179999
Q ss_pred EEEEEEEEeCCCCCeeeeee----ccceecc-cC--Cceeeee------------eeeeeceeEEEeee
Q 038267 67 ARFIIRVSNGGANRRLYISQ----VNERLLR-TC--EDFVWYV------------DCTIHGRFIVDVEF 116 (295)
Q Consensus 67 a~f~~~l~~~~~~~~~~~~~----~~~~~~~-~~--~~~~w~~------------~~~~~~~l~ve~~v 116 (295)
++++|+|+++++.+...... .....|. .. ...+||+ +|+.||+++|+|.|
T Consensus 115 ~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v 183 (186)
T cd03777 115 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 183 (186)
T ss_pred EEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEE
Confidence 99999999997642221111 0011121 11 1234664 47889999999985
No 19
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.62 E-value=2.8e-15 Score=117.90 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=58.1
Q ss_pred eeEEEEEeecC---------CCCccccCCceec--ceeeEEEEEeCC-----eeEEEEeecCCCC-C---CCCCceEEEE
Q 038267 11 RLAQWRIDNFG---------PCSYKKSDPFKIG--IWNWHLSVEKNR-----YLYVRLFPEPSRL-S---KEQPPFARFI 70 (295)
Q Consensus 11 ~~~~w~I~~~~---------~~~~~~S~~F~~g--g~~W~l~~yp~g-----~~~vsl~l~~~~~-~---~~~~v~a~f~ 70 (295)
|+|.|+|.||+ .++++.|+.|.+| ||+|+|++|||| ..+|++|+.+... . -.|++.|+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 68999999883 3578999999999 999999999998 2489998887542 1 2789999999
Q ss_pred EEEEeCCCC
Q 038267 71 IRVSNGGAN 79 (295)
Q Consensus 71 ~~l~~~~~~ 79 (295)
|+|+++.+.
T Consensus 81 ~~llDq~~~ 89 (154)
T cd03781 81 FTLLDQSDP 89 (154)
T ss_pred EEEECCCCC
Confidence 999999864
No 20
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.58 E-value=2.4e-14 Score=108.41 Aligned_cols=105 Identities=19% Similarity=0.348 Sum_probs=76.7
Q ss_pred eeEEEEEeecC--CCCccccCCceecceeeEEEEEeCCe----eEEEEeecCCCCC---CCCCceEEEEEEEEeCCCCCe
Q 038267 11 RLAQWRIDNFG--PCSYKKSDPFKIGIWNWHLSVEKNRY----LYVRLFPEPSRLS---KEQPPFARFIIRVSNGGANRR 81 (295)
Q Consensus 11 ~~~~w~I~~~~--~~~~~~S~~F~~gg~~W~l~~yp~g~----~~vsl~l~~~~~~---~~~~v~a~f~~~l~~~~~~~~ 81 (295)
++|+|+|.+++ .++.+.||.|.+||++|+|.+||+|. .++++||.+.... ..|.+.|+|+|+|+++++.+.
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 47999999997 58899999999999999999999985 3788887765443 469999999999999983332
Q ss_pred eeeeeccceec-ccCCceeee-e--------ee-eeeceeEEEeee
Q 038267 82 LYISQVNERLL-RTCEDFVWY-V--------DC-TIHGRFIVDVEF 116 (295)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~w~-~--------~~-~~~~~l~ve~~v 116 (295)
...... ..++ ....++||. + .. +.+|+++|+|+|
T Consensus 81 ~~~~~~-~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v 125 (126)
T cd00121 81 LSKSFT-HVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEV 125 (126)
T ss_pred ceEecc-CCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEE
Confidence 211111 1222 223444443 1 13 689999999986
No 21
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.56 E-value=1.9e-14 Score=111.70 Aligned_cols=106 Identities=11% Similarity=0.055 Sum_probs=76.1
Q ss_pred eeEEEEEeecC-------CCC--ccccCCc--eecceeeEEEEEeCCe-----eEEEEeecCCCC----CCCCCceEEEE
Q 038267 11 RLAQWRIDNFG-------PCS--YKKSDPF--KIGIWNWHLSVEKNRY-----LYVRLFPEPSRL----SKEQPPFARFI 70 (295)
Q Consensus 11 ~~~~w~I~~~~-------~~~--~~~S~~F--~~gg~~W~l~~yp~g~-----~~vsl~l~~~~~----~~~~~v~a~f~ 70 (295)
|++.|+|.||+ .|+ ++.||+| .+|||+|+|++||||. .+||+|+.+... --.|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 67999999874 466 7999999 9999999999999993 389999988541 14699999999
Q ss_pred EEEEeCCCCCeee--ee-e-ccceec-ccC--Cceeeee--------------eeeeeceeEEEeee
Q 038267 71 IRVSNGGANRRLY--IS-Q-VNERLL-RTC--EDFVWYV--------------DCTIHGRFIVDVEF 116 (295)
Q Consensus 71 ~~l~~~~~~~~~~--~~-~-~~~~~~-~~~--~~~~w~~--------------~~~~~~~l~ve~~v 116 (295)
|+|+++++.+..+ .. . .....| +.. .+.+||+ +|+.||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999998654321 11 1 101222 210 1224663 36779999999874
No 22
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.54 E-value=3.8e-14 Score=123.93 Aligned_cols=219 Identities=26% Similarity=0.250 Sum_probs=159.9
Q ss_pred EEEeecC-CCCccccCCceecceeeEEEEEeCCeeEEEEeecCCCCCCCCCceEEEEEEEEeCCCCCe-eeeeeccceec
Q 038267 15 WRIDNFG-PCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRLSKEQPPFARFIIRVSNGGANRR-LYISQVNERLL 92 (295)
Q Consensus 15 w~I~~~~-~~~~~~S~~F~~gg~~W~l~~yp~g~~~vsl~l~~~~~~~~~~v~a~f~~~l~~~~~~~~-~~~~~~~~~~~ 92 (295)
|.|.++. .+..+.|..|..||..|++..||.|+ +.++++...... +|.+.|++.+.+.|+..... .........++
T Consensus 8 ~~~~~~~~~~l~~ys~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~v~n~~~~~~~~~~~~~~~~~~ 85 (297)
T KOG1987|consen 8 WVISNFSSVGLVIYSNGFVKGGCKWRLSAYPKGN-YLSLTLSVSDSP-GWERYAKLRLTVVNQKSEKYLSTVEEGFSWFR 85 (297)
T ss_pred eeeccCcchhhhccccceeecCceEEEEEecCCC-EEEEEEEeccCC-CcceeEEEEEEEccCCCcceeeeeeeeEEecc
Confidence 9998874 56778899999999999999999997 566666554322 89999999999999876532 11101011111
Q ss_pred ccCCceeeeeeeeeeceeEEEeeeeeeeeecCCCCccCCCCCCCCCcccCChHHHHHHHHHHhhcCCcccEEEEeCCeEE
Q 038267 93 RTCEDFVWYVDCTIHGRFIVDVEFLELKIYPLNGGDASSVWPSDGMMQSVSAQSTLRCLARMLDEGILADTVIHTADGTL 172 (295)
Q Consensus 93 ~~~~~~~w~~~~~~~~~l~ve~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dv~l~v~~~~~ 172 (295)
...-...||+..+.+...... ..++.+
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~-----------------------------------------------------~~~g~~ 112 (297)
T KOG1987|consen 86 FNKVLKEWGFGKMLPLTLLID-----------------------------------------------------CSNGFL 112 (297)
T ss_pred ccccccccCcccccChHHhhc-----------------------------------------------------ccCcEE
Confidence 100011122211111110000 016669
Q ss_pred EeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHhCCCcccccHHHHH---HHHHHHhhcChHHHHH
Q 038267 173 KAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRL---ALLGAANKYDIADLKD 249 (295)
Q Consensus 173 ~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY~~~~~~~~~~~~~---~ll~~A~~~~~~~l~~ 249 (295)
.+|+.++++++++|+.|+.....+.....+.+.+..+..++++..|.|........ .... .++.+|++++...++.
T Consensus 113 ~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~~~lk~ 191 (297)
T KOG1987|consen 113 VAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKNRHLKL 191 (297)
T ss_pred EcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhccccccHHHHH
Confidence 99999999999999999988766666677789999999999999999975333331 2232 7889999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 250 ACEESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 250 ~c~~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
.|...+...+...++...+..+..++...+...|..++..
T Consensus 192 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 192 ACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred HHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 9999999998888888999999999999999998888875
No 23
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.53 E-value=4.7e-14 Score=110.98 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=55.4
Q ss_pred eeEEEEEeecCC-------CCccccCCc-eecceeeEEEEEeCCe----eEEEEeecCCCC----CCCCC-ceEEEEEEE
Q 038267 11 RLAQWRIDNFGP-------CSYKKSDPF-KIGIWNWHLSVEKNRY----LYVRLFPEPSRL----SKEQP-PFARFIIRV 73 (295)
Q Consensus 11 ~~~~w~I~~~~~-------~~~~~S~~F-~~gg~~W~l~~yp~g~----~~vsl~l~~~~~----~~~~~-v~a~f~~~l 73 (295)
..|.|+|.||+. |+.+.||+| .+|||+|+|++||+|. .+||||+.+... .-.|+ +.|+++++|
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~L 81 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMTL 81 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEEE
Confidence 479999999863 447999998 9999999999999994 378998887543 23477 689999999
Q ss_pred EeCC
Q 038267 74 SNGG 77 (295)
Q Consensus 74 ~~~~ 77 (295)
++++
T Consensus 82 lDQ~ 85 (167)
T cd03771 82 LDQD 85 (167)
T ss_pred ECCC
Confidence 9997
No 24
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.51 E-value=1.1e-13 Score=106.94 Aligned_cols=105 Identities=9% Similarity=-0.001 Sum_probs=75.0
Q ss_pred eeEEEEEeecC-------CCC--ccccCCceec--ceeeEEEEEeCCe-----eEEEEeecCCCCCC-----CCCceEEE
Q 038267 11 RLAQWRIDNFG-------PCS--YKKSDPFKIG--IWNWHLSVEKNRY-----LYVRLFPEPSRLSK-----EQPPFARF 69 (295)
Q Consensus 11 ~~~~w~I~~~~-------~~~--~~~S~~F~~g--g~~W~l~~yp~g~-----~~vsl~l~~~~~~~-----~~~v~a~f 69 (295)
|++.|+|.||+ .|+ .+.||+|..+ ||+|+|++||||. .+||+|+.+.. .. .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~-g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMK-GEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEec-CCcccccCcceEEEE
Confidence 67999999985 233 5999999988 9999999999993 38999988864 23 79999999
Q ss_pred EEEEEeCCCCCee-eeee-cc-ceecc---cCCceeeee--------------eeeeeceeEEEeee
Q 038267 70 IIRVSNGGANRRL-YISQ-VN-ERLLR---TCEDFVWYV--------------DCTIHGRFIVDVEF 116 (295)
Q Consensus 70 ~~~l~~~~~~~~~-~~~~-~~-~~~~~---~~~~~~w~~--------------~~~~~~~l~ve~~v 116 (295)
+|+|+++++.... .... .. ...|. +....+||+ +|+.||+++|+|+|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 9999999864421 1111 10 12232 011223663 47789999999985
No 25
>smart00061 MATH meprin and TRAF homology.
Probab=99.44 E-value=5.9e-13 Score=95.84 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=55.8
Q ss_pred EEEEEeecC---CCCccccCCceecceeeEEEEEeCCeeEEEEeecCCCC---CCCCCceEEEEEEEEeCCCCCe
Q 038267 13 AQWRIDNFG---PCSYKKSDPFKIGIWNWHLSVEKNRYLYVRLFPEPSRL---SKEQPPFARFIIRVSNGGANRR 81 (295)
Q Consensus 13 ~~w~I~~~~---~~~~~~S~~F~~gg~~W~l~~yp~g~~~vsl~l~~~~~---~~~~~v~a~f~~~l~~~~~~~~ 81 (295)
+.|+|+|++ .++.+.||+|.+||++|+|++||+ ..++++||.+... +.+|.+.|+|+++|++++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~-~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK-NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc-CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999986 578899999999999999999998 4567776655332 2268999999999999998654
No 26
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.34 E-value=4.7e-12 Score=95.12 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=69.2
Q ss_pred EeecCC----CCccccCCceecceeeEEEEEeCCe-eEEEEeecC--CCCC--CCCCceEEEEEEEEeCCCCCeeeeeec
Q 038267 17 IDNFGP----CSYKKSDPFKIGIWNWHLSVEKNRY-LYVRLFPEP--SRLS--KEQPPFARFIIRVSNGGANRRLYISQV 87 (295)
Q Consensus 17 I~~~~~----~~~~~S~~F~~gg~~W~l~~yp~g~-~~vsl~l~~--~~~~--~~~~v~a~f~~~l~~~~~~~~~~~~~~ 87 (295)
|.||+. +....|+.|.+||++|+|.+||+++ .++++||.+ .... ..|++.|++++++++++|+.......
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~- 79 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGNGKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRIK- 79 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTESTTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEEE-
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCCcCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeeee-
Confidence 456642 3345669999999999999999986 455555544 3223 48999999999999998887333222
Q ss_pred cceecccCCceeee-e--------e-eeeeceeEEEeeee
Q 038267 88 NERLLRTCEDFVWY-V--------D-CTIHGRFIVDVEFL 117 (295)
Q Consensus 88 ~~~~~~~~~~~~w~-~--------~-~~~~~~l~ve~~v~ 117 (295)
.+.|....++||+ + . |+.||+++|+|+|.
T Consensus 80 -~~~F~~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~ 118 (119)
T PF00917_consen 80 -SHSFNNPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVK 118 (119)
T ss_dssp -CEEECTTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEE
T ss_pred -eeEEeeecccchhheeEHHHhCccCCeECCEEEEEEEEE
Confidence 3455555666665 1 2 58899999999974
No 27
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.22 E-value=1.1e-10 Score=91.39 Aligned_cols=109 Identities=11% Similarity=0.048 Sum_probs=75.1
Q ss_pred ceeeeeEEEEEeecC-------CCC--ccccCCceec--ceeeEEEEEeCCe-----eEEEEeecCCCC----CCCCCce
Q 038267 7 ETISRLAQWRIDNFG-------PCS--YKKSDPFKIG--IWNWHLSVEKNRY-----LYVRLFPEPSRL----SKEQPPF 66 (295)
Q Consensus 7 ~~~~~~~~w~I~~~~-------~~~--~~~S~~F~~g--g~~W~l~~yp~g~-----~~vsl~l~~~~~----~~~~~v~ 66 (295)
....|.+.|+|.||+ .|. .+.||+|..+ |++|++++||+|. .++|||+.+... .-.|+..
T Consensus 15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCcee
Confidence 345699999999996 233 5899999875 8999999999983 278888876332 3579999
Q ss_pred EEEEEEEEeCCCCCeeeeee-------ccceecccCCceeeee-------------eeeeeceeEEEeee
Q 038267 67 ARFIIRVSNGGANRRLYISQ-------VNERLLRTCEDFVWYV-------------DCTIHGRFIVDVEF 116 (295)
Q Consensus 67 a~f~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~w~~-------------~~~~~~~l~ve~~v 116 (295)
.+++++|++|++..+....- .|.|-.+ ....+||+ +|+.||++.|+|.|
T Consensus 95 ~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~-~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVN-DMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV 163 (164)
T ss_pred eEEEEEEECCCCCCcceeEEEcCcchHhcCCCCc-ccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence 99999999997533221111 1222212 12223442 37889999999874
No 28
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2e-10 Score=106.38 Aligned_cols=110 Identities=20% Similarity=0.311 Sum_probs=78.5
Q ss_pred eeeeEEEEEeecCCCCc-cccCCceecceeeEEEEEeCCee--EEEEeecCCCC------CCCCCceEEEEEEEEeCCCC
Q 038267 9 ISRLAQWRIDNFGPCSY-KKSDPFKIGIWNWHLSVEKNRYL--YVRLFPEPSRL------SKEQPPFARFIIRVSNGGAN 79 (295)
Q Consensus 9 ~~~~~~w~I~~~~~~~~-~~S~~F~~gg~~W~l~~yp~g~~--~vsl~l~~~~~------~~~~~v~a~f~~~l~~~~~~ 79 (295)
.-.++.|+|++|+.++. ..||+|.+||+.|+|.++|+|+. .+++||++... .+.|.|+|+|.|.|.++..+
T Consensus 37 ~~~sftW~vk~wsel~~k~~Sp~F~vg~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p~~p 116 (1089)
T COG5077 37 LEMSFTWKVKRWSELAKKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGGKYYDCCAQFAFDISNPKYP 116 (1089)
T ss_pred hhcccceecCChhhhhhhccCCcccccCeeEEEEEecccCCccccEEEEEeccchhhhhcCcchhhhhheeeecCCCCCC
Confidence 34678999999987665 99999999999999999999943 46777765321 24589999999999998775
Q ss_pred CeeeeeeccceecccCCceeeeee-----------------eeeeceeEEEeeeeeee
Q 038267 80 RRLYISQVNERLLRTCEDFVWYVD-----------------CTIHGRFIVDVEFLELK 120 (295)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~w~~~-----------------~~~~~~l~ve~~v~~~~ 120 (295)
......+..++|.....+ |||. ++-+|++.|.+.+.+++
T Consensus 117 ti~~iN~sHhrFs~~~tD--wGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlk 172 (1089)
T COG5077 117 TIEYINKSHHRFSMESTD--WGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLK 172 (1089)
T ss_pred chhhhhcccccccccccc--cchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEe
Confidence 433333333444443344 8851 34578898888865544
No 29
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.90 E-value=5.1e-09 Score=98.11 Aligned_cols=82 Identities=24% Similarity=0.352 Sum_probs=65.5
Q ss_pred cCChHHHHHHHHHHhhcC----CcccEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCcc------------ceEEE
Q 038267 141 SVSAQSTLRCLARMLDEG----ILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKES------------STIYI 204 (295)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~----~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~------------~~i~l 204 (295)
.++.+.+...|..|+... .+.||+|.|+++.|+|||.||++||++|+.+|...-+.+.. ..|.+
T Consensus 535 ~~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v 614 (1267)
T KOG0783|consen 535 RAASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV 614 (1267)
T ss_pred ccccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee
Confidence 455566777888887654 46799999999999999999999999999999543322222 24557
Q ss_pred CCCCHHHHHHHHHHHhCC
Q 038267 205 EDMSVESCMALLSYLYGT 222 (295)
Q Consensus 205 ~~~~~~~f~~~L~~lY~~ 222 (295)
++++|..|+.+|+||||+
T Consensus 615 e~i~p~mfe~lL~~iYtd 632 (1267)
T KOG0783|consen 615 EDIPPLMFEILLHYIYTD 632 (1267)
T ss_pred ccCCHHHHHHHHHHHhcc
Confidence 789999999999999986
No 30
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.42 E-value=4.1e-07 Score=78.57 Aligned_cols=118 Identities=22% Similarity=0.187 Sum_probs=93.5
Q ss_pred eEEEeEeeeeccCCHHHHHhhcCccCcCccc----eEEECCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHHHhhcChH
Q 038267 170 GTLKAHKAVLSASSPVFQSMFHHDLKEKESS----TIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIA 245 (295)
Q Consensus 170 ~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~----~i~l~~~~~~~f~~~L~~lY~~~~~~~~~~~~~~ll~~A~~~~~~ 245 (295)
.+++||++++. |.+||+.||.|+|.|+..+ ...++.....+.+..|+|+|++.+... ++-+.+++-.|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~-~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDII-FDVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccch-HHHHhhHHHHhhHhhhh
Confidence 36999999998 8899999999999996522 344666778899999999998644333 26788899999998665
Q ss_pred --H-HHHHHHHHHHhc---CChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 246 --D-LKDACEESLLED---INSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 246 --~-l~~~c~~~l~~~---~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
+ |+..+...|.+. ++..++.+++..+.......|...+..|++.
T Consensus 379 ~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~ 428 (516)
T KOG0511|consen 379 DDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEAR 428 (516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 556666656553 5566799999999999999999999999887
No 31
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=98.31 E-value=3.6e-06 Score=65.83 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=53.1
Q ss_pred eeEEEEEeecC-------CCCccccCCceec-ceeeEEEEEeCCee------EEEEeecCCCC----CCCCCc-eEEEEE
Q 038267 11 RLAQWRIDNFG-------PCSYKKSDPFKIG-IWNWHLSVEKNRYL------YVRLFPEPSRL----SKEQPP-FARFII 71 (295)
Q Consensus 11 ~~~~w~I~~~~-------~~~~~~S~~F~~g-g~~W~l~~yp~g~~------~vsl~l~~~~~----~~~~~v-~a~f~~ 71 (295)
..+.|+|.||+ .+..+.||.|..+ |+.-++++|++|.. ++|||+.+... --.|++ .-+.++
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 35899999985 3456999999886 99999999997732 79998877432 346885 458999
Q ss_pred EEEeCCC
Q 038267 72 RVSNGGA 78 (295)
Q Consensus 72 ~l~~~~~ 78 (295)
.|++|+.
T Consensus 82 ~llDQ~~ 88 (167)
T cd03783 82 TVLDQDP 88 (167)
T ss_pred EEEcCCc
Confidence 9999963
No 32
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.27 E-value=6.4e-07 Score=74.23 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCcc-cEEEEeCC---------------eEEEeEeeeeccCCHHHHHhhcCccCcCc---------cc
Q 038267 146 STLRCLARMLDEGILA-DTVIHTAD---------------GTLKAHKAVLSASSPVFQSMFHHDLKEKE---------SS 200 (295)
Q Consensus 146 ~~~~~~~~l~~~~~~~-Dv~l~v~~---------------~~~~~hk~iLa~~S~~F~~~f~~~~~e~~---------~~ 200 (295)
.+-.++..|++..-.- |+.+.+.+ ++++||++|.++||++||.++....++.. ..
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 3445556666664444 44444322 37999999999999999999865443321 23
Q ss_pred eEEECC-CCHHHH-HHHHHHHhCCCcc---------------------------cccHHHHHHHHHHHhhcChHHHHHHH
Q 038267 201 TIYIED-MSVESC-MALLSYLYGTIKQ---------------------------EDFWKHRLALLGAANKYDIADLKDAC 251 (295)
Q Consensus 201 ~i~l~~-~~~~~f-~~~L~~lY~~~~~---------------------------~~~~~~~~~ll~~A~~~~~~~l~~~c 251 (295)
.|.+++ +-|..| -.+|+++||+... ..-.+.+.+|+.+|-.|+++.|.+.|
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~ 380 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQAC 380 (401)
T ss_pred eeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 445555 4678999996210 00124567889999999999999999
Q ss_pred HHHHHhcCChhhHHH
Q 038267 252 EESLLEDINSGNVLE 266 (295)
Q Consensus 252 ~~~l~~~~~~~~~~~ 266 (295)
+..+......++...
T Consensus 381 e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 381 EDVIRKACAADLSNG 395 (401)
T ss_pred HHHHHhhhhhhcccc
Confidence 998888766555443
No 33
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.24 E-value=9.1e-06 Score=66.96 Aligned_cols=95 Identities=23% Similarity=0.346 Sum_probs=79.2
Q ss_pred EEEEeCCeEEEeEeeeeccCCHHHHHhhcCccC-cC-ccceEEECCCCHHHHHHHHHHHh-CCCcccccHHHHHHHHHHH
Q 038267 163 TVIHTADGTLKAHKAVLSASSPVFQSMFHHDLK-EK-ESSTIYIEDMSVESCMALLSYLY-GTIKQEDFWKHRLALLGAA 239 (295)
Q Consensus 163 v~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~-e~-~~~~i~l~~~~~~~f~~~L~~lY-~~~~~~~~~~~~~~ll~~A 239 (295)
|.+.|||..|..++.-|.....+|++|+..+.. +. ..+.| +-|=+|..|..+|.||- |+...++....+.+|++=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~I-FIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCI-FIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcE-EecCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 568999999999999999999999999988753 22 22334 34678999999999999 5555666568899999999
Q ss_pred hhcChHHHHHHHHHHHHhc
Q 038267 240 NKYDIADLKDACEESLLED 258 (295)
Q Consensus 240 ~~~~~~~l~~~c~~~l~~~ 258 (295)
..|.++.|.+.|...|...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999987775
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.19 E-value=1.3e-06 Score=72.39 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHhhcCCcccEEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCcc--ceEEECCCCHHHHHHHHHHHh
Q 038267 143 SAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKES--STIYIEDMSVESCMALLSYLY 220 (295)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~--~~i~l~~~~~~~f~~~L~~lY 220 (295)
+...+++++...++..-..|+-|......|+|||++|++|||+|+.+.+....-... -.|..-+++-++|+++|+++|
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 456788999999888888999999999999999999999999999998764211111 145556789999999999999
Q ss_pred CCCcc-ccc-HHHHHHHHHHHhhcChHH
Q 038267 221 GTIKQ-EDF-WKHRLALLGAANKYDIAD 246 (295)
Q Consensus 221 ~~~~~-~~~-~~~~~~ll~~A~~~~~~~ 246 (295)
++... ++. .+++.-|-.++.-|+.+.
T Consensus 193 tgEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 193 TGEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred hcccchhhcCCchHHHHHHHHHhhCCch
Confidence 74222 111 155666777777777653
No 35
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.98 E-value=8.1e-06 Score=58.48 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=64.8
Q ss_pred EEEEeCCeEEEeEeeeec-cCCHHHHHhhcCc---cCcCccceEEECCCCHHHHHHHHHHHhC-CCcccccHHHHHHHHH
Q 038267 163 TVIHTADGTLKAHKAVLS-ASSPVFQSMFHHD---LKEKESSTIYIEDMSVESCMALLSYLYG-TIKQEDFWKHRLALLG 237 (295)
Q Consensus 163 v~l~v~~~~~~~hk~iLa-~~S~~F~~~f~~~---~~e~~~~~i~l~~~~~~~f~~~L~~lY~-~~~~~~~~~~~~~ll~ 237 (295)
|.|.|||+.|.+-+..|. ....+|..|+.++ .....++++-| |=+|..|+.+|+|+.+ +............+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 679999999999999998 5567999999864 33445566766 6799999999999986 4222211246788999
Q ss_pred HHhhcChHHH-HHHH
Q 038267 238 AANKYDIADL-KDAC 251 (295)
Q Consensus 238 ~A~~~~~~~l-~~~c 251 (295)
-|..|+++.+ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6655
No 36
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=97.84 E-value=9.9e-05 Score=57.58 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=54.5
Q ss_pred eeEEEEEeecC-------CCCccccCCceec-ceeeEEEEEeCCe----eEEEEeecCCCC----CCCCCce-EEEEEEE
Q 038267 11 RLAQWRIDNFG-------PCSYKKSDPFKIG-IWNWHLSVEKNRY----LYVRLFPEPSRL----SKEQPPF-ARFIIRV 73 (295)
Q Consensus 11 ~~~~w~I~~~~-------~~~~~~S~~F~~g-g~~W~l~~yp~g~----~~vsl~l~~~~~----~~~~~v~-a~f~~~l 73 (295)
..+.|+|.||+ .+..+.||+|..+ ||+-++++|+||. .++|||..+... .-.|+.. -+.++.|
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~L 81 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMML 81 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEE
Confidence 36899999985 3556999998865 9999999999993 378888877432 3469888 7999999
Q ss_pred EeCCC
Q 038267 74 SNGGA 78 (295)
Q Consensus 74 ~~~~~ 78 (295)
++|+.
T Consensus 82 lDQ~~ 86 (167)
T cd03782 82 LDQHP 86 (167)
T ss_pred EcCCC
Confidence 99974
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.64 E-value=0.00043 Score=48.29 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=59.1
Q ss_pred EEEEeCCe-EEEeEeeeeccCCHHHHHhhcCcc--CcCccceEEECCCCHHHHHHHHHHH-h----CCC--cc---cccH
Q 038267 163 TVIHTADG-TLKAHKAVLSASSPVFQSMFHHDL--KEKESSTIYIEDMSVESCMALLSYL-Y----GTI--KQ---EDFW 229 (295)
Q Consensus 163 v~l~v~~~-~~~~hk~iLa~~S~~F~~~f~~~~--~e~~~~~i~l~~~~~~~f~~~L~~l-Y----~~~--~~---~~~~ 229 (295)
|+++.+|. .|-..|. +|.-|+-.|+||.|+. .++..++|.+.|++...++.+-+|+ | ++. .+ +-..
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 45555544 5555554 5668999999998764 5667789999999999999999998 3 221 11 1123
Q ss_pred HHHHHHHHHHhhcCh
Q 038267 230 KHRLALLGAANKYDI 244 (295)
Q Consensus 230 ~~~~~ll~~A~~~~~ 244 (295)
+.+.+||.+|+.+++
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 789999999998763
No 38
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.80 E-value=0.0051 Score=40.19 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=42.9
Q ss_pred EEEEe-CCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHh
Q 038267 163 TVIHT-ADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLY 220 (295)
Q Consensus 163 v~l~v-~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY 220 (295)
++|+. +|+.|.+.+.++. .|..++.|+.+...+.. .|.|++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHH
Confidence 45554 5679999988766 99999999975433322 79999999999999999996
No 39
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.77 E-value=0.0051 Score=44.79 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=44.7
Q ss_pred EEEEe-CCeEEEeEeeeeccCCHHHHHhhcCccCcC-ccceEEECCCCHHHHHHHHHHHh
Q 038267 163 TVIHT-ADGTLKAHKAVLSASSPVFQSMFHHDLKEK-ESSTIYIEDMSVESCMALLSYLY 220 (295)
Q Consensus 163 v~l~v-~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~-~~~~i~l~~~~~~~f~~~L~~lY 220 (295)
++|+. +|.+|.+.+.+. ..|..++.|+.+...+. ....|++++++...++.+++|++
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~ 62 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCE 62 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHH
Confidence 55554 566999999876 49999999997543222 22589999999999999999997
No 40
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.67 E-value=0.0042 Score=53.71 Aligned_cols=119 Identities=15% Similarity=0.197 Sum_probs=87.4
Q ss_pred EEEEeCC------eEEEeEeeeeccCCHHHHHhhcCccC-cCccceEEEC-CCCHHHHHHHHHHHhCC-CcccccHHHHH
Q 038267 163 TVIHTAD------GTLKAHKAVLSASSPVFQSMFHHDLK-EKESSTIYIE-DMSVESCMALLSYLYGT-IKQEDFWKHRL 233 (295)
Q Consensus 163 v~l~v~~------~~~~~hk~iLa~~S~~F~~~f~~~~~-e~~~~~i~l~-~~~~~~f~~~L~~lY~~-~~~~~~~~~~~ 233 (295)
|+|+|-| +.|.|.+.+|-..=.||+..+..... .....+|+|. .-|..+|+=+++|+.++ ..++. .|+.
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~--~Nvv 78 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP--SNVV 78 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc--CcEE
Confidence 4566644 48999999999999999999965221 2223456665 45788999999999974 33344 7899
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCcHHHHHHH
Q 038267 234 ALLGAANKYDIADLKDACEESLLEDIN----------SGNVLERLQEAWLYQLSKLKKGC 283 (295)
Q Consensus 234 ~ll~~A~~~~~~~l~~~c~~~l~~~~~----------~~~~~~~l~~A~~~~~~~L~~~~ 283 (295)
.||.-|+.++|+.|.+.|-.|+..+++ --|---+.++|..+...+|..+-
T Consensus 79 sIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~~~ 138 (317)
T PF11822_consen 79 SILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEAAF 138 (317)
T ss_pred EeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhHhh
Confidence 999999999999999999999866532 11233467778887777766633
No 41
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.011 Score=46.41 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=69.8
Q ss_pred CCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHhCC--C--c--c----------cc----
Q 038267 168 ADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGT--I--K--Q----------ED---- 227 (295)
Q Consensus 168 ~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY~~--~--~--~----------~~---- 227 (295)
+|+.|.+-..+.. .|..+++++...--......|+|+.|+...|..+++|++.. . . . ..
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 5667777776554 78888888743211111158999999999999999999841 1 0 1 00
Q ss_pred ----cHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHH
Q 038267 228 ----FWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLER 267 (295)
Q Consensus 228 ----~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~ 267 (295)
...++.+|+.||++++++.|.+.|++.+...+...+.-++
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEi 135 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEI 135 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHH
Confidence 0247889999999999999999999988876644444333
No 42
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.98 E-value=0.031 Score=45.63 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=69.9
Q ss_pred cEEEEeCCeEEEeEeeeeccCCH--HHHHhhcCc--cCcCccceEEECCCCHHHHHHHHHHHhCCCcccccHHHHHHHHH
Q 038267 162 DTVIHTADGTLKAHKAVLSASSP--VFQSMFHHD--LKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLG 237 (295)
Q Consensus 162 Dv~l~v~~~~~~~hk~iLa~~S~--~F~~~f~~~--~~e~~~~~i~l~~~~~~~f~~~L~~lY~~~~~~~~~~~~~~ll~ 237 (295)
=|.+.++|+.|-.-+.-|..|-| -..+||.+. +.+....--.+-|=+|..|+.+|.|+..+..+....-++..+|+
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 47788999999888877777754 678888664 22223334556678999999999999965433333356899999
Q ss_pred HHhhcChHHHHHHHHH
Q 038267 238 AANKYDIADLKDACEE 253 (295)
Q Consensus 238 ~A~~~~~~~l~~~c~~ 253 (295)
.|++|++-.|++-.++
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999998887
No 43
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.85 E-value=0.0046 Score=54.16 Aligned_cols=101 Identities=18% Similarity=0.115 Sum_probs=68.4
Q ss_pred HHHHHHhhcCC---cccEEEEe-CCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHhCCCc
Q 038267 149 RCLARMLDEGI---LADTVIHT-ADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIK 224 (295)
Q Consensus 149 ~~~~~l~~~~~---~~Dv~l~v-~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY~~~~ 224 (295)
.++..++++.. ..|+++.. .|..|-|||..|++||.+|..-+..-+ ....+|+-..+-+.+|..+|+|+|-...
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~n 212 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNTN 212 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhhh
Confidence 34445554433 35888866 456788999999999998865543211 1234666667889999999999995422
Q ss_pred ccccHHHHHHHHHHHhhcChHHHHHHHH
Q 038267 225 QEDFWKHRLALLGAANKYDIADLKDACE 252 (295)
Q Consensus 225 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 252 (295)
.... +.-.+|+.+..+|+.+.+....+
T Consensus 213 a~~~-~qynallsi~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 213 AEWK-DQYNALLSIEVKFSKEKLSLEIS 239 (516)
T ss_pred hhhh-hHHHHHHhhhhhccHHHhHHHHh
Confidence 2221 44588999999999887765443
No 44
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.54 E-value=0.051 Score=48.61 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=64.1
Q ss_pred EEEEeCCeEEEeEeeeeccCC--HHHHHhhcCccCcCccc-eEEECCCCHHHHHHHHHHHhCC-CcccccHHHHH-HHHH
Q 038267 163 TVIHTADGTLKAHKAVLSASS--PVFQSMFHHDLKEKESS-TIYIEDMSVESCMALLSYLYGT-IKQEDFWKHRL-ALLG 237 (295)
Q Consensus 163 v~l~v~~~~~~~hk~iLa~~S--~~F~~~f~~~~~e~~~~-~i~l~~~~~~~f~~~L~~lY~~-~~~~~~~~~~~-~ll~ 237 (295)
|.|.|+|+.|.-.+.-|+... .+|.+++.+.+.-.... -..+-|=+|+.|..+|.|+-|+ +.... .... .++.
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g--~~~~~llhd 90 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASG--VFPERLLHD 90 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCcc--Cchhhhhhh
Confidence 678999999999999997665 59999998876544332 2334478999999999999975 44433 2333 4455
Q ss_pred HHhhcChHHHHH
Q 038267 238 AANKYDIADLKD 249 (295)
Q Consensus 238 ~A~~~~~~~l~~ 249 (295)
=|.+|++..|..
T Consensus 91 EA~fYGl~~llr 102 (465)
T KOG2714|consen 91 EAMFYGLTPLLR 102 (465)
T ss_pred hhhhcCcHHHHH
Confidence 899999998877
No 45
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=94.64 E-value=0.017 Score=50.45 Aligned_cols=127 Identities=19% Similarity=0.308 Sum_probs=101.5
Q ss_pred EEEEeCCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHHHhhc
Q 038267 163 TVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKY 242 (295)
Q Consensus 163 v~l~v~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY~~~~~~~~~~~~~~ll~~A~~~ 242 (295)
.++......+.+|+.+|+..||.|..+....-..+....+.+..+....+..+.+++|......+.......++.+...|
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~ek~e~~~~~ihll~~~~~~ 108 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSSLEKHEMVFFDIHLLALSHVY 108 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccchhhhHHHHHHHHHHhhhhhh
Confidence 33444556899999999999999988875543333455777888999999999999997754444445667788888899
Q ss_pred ChHHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 243 DIADLKDACEESLLE-DINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 243 ~~~~l~~~c~~~l~~-~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
.++..+..|...+.. .++..++...+..+..+....|..++...+..
T Consensus 109 ~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~ 156 (319)
T KOG1778|consen 109 VVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIML 156 (319)
T ss_pred hccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 999999999887777 56788899999999999999999988887765
No 46
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.69 Score=34.40 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=69.3
Q ss_pred EEEEe-CCeEEEeEeeeeccCCHHHHHhhcCccCcCccceEEECCCCHHHHHHHHHHHh--CC-C------------ccc
Q 038267 163 TVIHT-ADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLY--GT-I------------KQE 226 (295)
Q Consensus 163 v~l~v-~~~~~~~hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~lY--~~-~------------~~~ 226 (295)
+.+.. +|+.|.+.+. .|-+|-..+.|+... ....-.|.++.+...+|+.+++|+- ++ . .+.
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~--~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDS--TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccc--cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 45544 5567777664 566888888887532 1222357788999999999999996 22 1 111
Q ss_pred ccH---------HHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHH
Q 038267 227 DFW---------KHRLALLGAANKYDIADLKDACEESLLEDINSGNVL 265 (295)
Q Consensus 227 ~~~---------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~ 265 (295)
+.+ +.+.++.-+|++++++-|.+.|++.+...+...+.-
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpe 128 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPE 128 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHH
Confidence 111 456778889999999999999999887766554443
No 47
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=92.30 E-value=2.2 Score=33.46 Aligned_cols=96 Identities=13% Similarity=0.165 Sum_probs=69.8
Q ss_pred ccEEEEeCCeEEEeEeeeeccCCHHHHHhh-cCcc---CcCccceEEECCCCHHHHHHHHHHHhCC-CcccccHHHHHHH
Q 038267 161 ADTVIHTADGTLKAHKAVLSASSPVFQSMF-HHDL---KEKESSTIYIEDMSVESCMALLSYLYGT-IKQEDFWKHRLAL 235 (295)
Q Consensus 161 ~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~f-~~~~---~e~~~~~i~l~~~~~~~f~~~L~~lY~~-~~~~~~~~~~~~l 235 (295)
.=|.+.|||..|-.-|.-|..-+.-|-.-| ...+ ......--.+-|=+|.-|..+|.|+-.+ ...+. -.-+.+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--l~eeGv 98 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--LSEEGV 98 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--hhhhcc
Confidence 447788999999999999998885554444 3321 1222334567788999999999999854 33333 223568
Q ss_pred HHHHhhcChHHHHHHHHHHHHhc
Q 038267 236 LGAANKYDIADLKDACEESLLED 258 (295)
Q Consensus 236 l~~A~~~~~~~l~~~c~~~l~~~ 258 (295)
|.-|+.|.++.|+.+..+.|...
T Consensus 99 L~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 99 LEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred chhhhccCChHHHHHHHHHHHHH
Confidence 99999999999999888877664
No 48
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=91.88 E-value=0.41 Score=32.70 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHcCc
Q 038267 230 KHRLALLGAANKYDIADLKDACEESLLEDIN---SGNVLERLQEAWLYQL 276 (295)
Q Consensus 230 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~~~~~~l~~A~~~~~ 276 (295)
+.+.+|+.+|++++++.|.+.|.+.+...+. ++.+..++.+...+..
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~ 63 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTP 63 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSH
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCH
Confidence 6789999999999999999999998887554 4455556655554443
No 49
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=84.77 E-value=5.1 Score=33.22 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=56.8
Q ss_pred cccEE-EEeCCeEEEeEee-eeccCCHHHHHhhcCccCcCc--cceEEECCCCHHHHHHHHHHHhC-CCcccccHHHHHH
Q 038267 160 LADTV-IHTADGTLKAHKA-VLSASSPVFQSMFHHDLKEKE--SSTIYIEDMSVESCMALLSYLYG-TIKQEDFWKHRLA 234 (295)
Q Consensus 160 ~~Dv~-l~v~~~~~~~hk~-iLa~~S~~F~~~f~~~~~e~~--~~~i~l~~~~~~~f~~~L~~lY~-~~~~~~~~~~~~~ 234 (295)
..|++ +-|+|.-|..-.. +++-.-.....||++...-.. .....| |=+-..|+.+|.|+-+ ...+.+...++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 44555 4555554443333 233334566777775322111 122222 4566789999999998 4444443367889
Q ss_pred HHHHHhhcChHHHHHHHHH
Q 038267 235 LLGAANKYDIADLKDACEE 253 (295)
Q Consensus 235 ll~~A~~~~~~~l~~~c~~ 253 (295)
|..-|+.|+++....++.+
T Consensus 86 L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHHHccccHHHHHhc
Confidence 9999999999987776555
No 50
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=1 Score=46.55 Aligned_cols=104 Identities=15% Similarity=0.030 Sum_probs=64.6
Q ss_pred eEEEEEeecC-CCCccccCCceecceeeEEEEEeCCee--EEEEee--cCCCCCCCCCceEEEEEEEEeCCCCCeeeeee
Q 038267 12 LAQWRIDNFG-PCSYKKSDPFKIGIWNWHLSVEKNRYL--YVRLFP--EPSRLSKEQPPFARFIIRVSNGGANRRLYISQ 86 (295)
Q Consensus 12 ~~~w~I~~~~-~~~~~~S~~F~~gg~~W~l~~yp~g~~--~vsl~l--~~~~~~~~~~v~a~f~~~l~~~~~~~~~~~~~ 86 (295)
...|.+.+.. ......||.|..|+.+|++.+.|+++. .++.++ .+......|.+.+.+.++++|..+........
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 107 (1093)
T KOG1863|consen 28 STTIDGIDDKSLLYRALSSNFGAGATKWKILIAPKVNSLQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNLPDPEKA 107 (1093)
T ss_pred cccccCcCcchhhhHhcCccccccccceeeeeccccCcccceeEEeeeccCCCCcceEecchhhhccccCCCCchhhhhh
Confidence 3346666553 233678999999999999999998742 455554 33332344999999999999933333222222
Q ss_pred ccceecccCCceeeee--------------eeeeeceeEEEeeee
Q 038267 87 VNERLLRTCEDFVWYV--------------DCTIHGRFIVDVEFL 117 (295)
Q Consensus 87 ~~~~~~~~~~~~~w~~--------------~~~~~~~l~ve~~v~ 117 (295)
..+.+.....+ ||+ +++.+|++..++++.
T Consensus 108 ~~h~~~~~~~d--wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 150 (1093)
T KOG1863|consen 108 IHHVFTADERD--WGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVR 150 (1093)
T ss_pred hhhcccccccc--hhhccchhHhhccCcccccccccceeeeeeee
Confidence 22333332343 542 467788888887754
No 51
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=81.75 E-value=5.3 Score=29.51 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=45.9
Q ss_pred CCeEEEeEeeeeccCCHHHHHh-hcCccCcCccceEEECCC--CHHHHHHHHHHHhCCCcccccHHHHHHHHHHHhhcCh
Q 038267 168 ADGTLKAHKAVLSASSPVFQSM-FHHDLKEKESSTIYIEDM--SVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDI 244 (295)
Q Consensus 168 ~~~~~~~hk~iLa~~S~~F~~~-f~~~~~e~~~~~i~l~~~--~~~~f~~~L~~lY~~~~~~~~~~~~~~ll~~A~~~~~ 244 (295)
++.++.+|-.+++++||..... |.-+ =...+.+.--|. -.+..+..|+++|.+....+. ..+++..+-|.+.+
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~Ip--Y~~~~ii~PFDFNglEe~I~~~l~~mY~~s~~~ef--k~EDmve~IDIlmm 95 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIP--YTHEGIIPPFDFNGLEEGIKNTLKIMYKDSKIEEF--KQEDMVEAIDILMM 95 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEe--ccCCCeECCcccCcHHHHHHHHHHHHhCCCCcccc--cHHHHHhhhheeee
Confidence 5679999999999999976432 1111 111111111133 357889999999987666552 34566666666655
Q ss_pred H
Q 038267 245 A 245 (295)
Q Consensus 245 ~ 245 (295)
+
T Consensus 96 e 96 (117)
T PF09593_consen 96 E 96 (117)
T ss_pred c
Confidence 4
No 52
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=75.67 E-value=5.4 Score=28.54 Aligned_cols=29 Identities=38% Similarity=0.455 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 261 SGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 261 ~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
.+++..++.+|..++.+.|++.|.++|.+
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 78899999999999999999999999976
No 53
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=75.61 E-value=18 Score=31.46 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=55.8
Q ss_pred CcccEEEEeCCeEEEeEeeeeccCC-HHHHHhhcCccCc---CccceEEE-CCCCHHHHHHHHHHHhCCCcccccHHHHH
Q 038267 159 ILADTVIHTADGTLKAHKAVLSASS-PVFQSMFHHDLKE---KESSTIYI-EDMSVESCMALLSYLYGTIKQEDFWKHRL 233 (295)
Q Consensus 159 ~~~Dv~l~v~~~~~~~hk~iLa~~S-~~F~~~f~~~~~e---~~~~~i~l-~~~~~~~f~~~L~~lY~~~~~~~~~~~~~ 233 (295)
..--++..+.+-+|-+.+.+|.+.- .-.-.||.+++.- +..++.++ ++|+..+|+++|+|--+++.-....-.+-
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvp 173 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVS 173 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchH
Confidence 3345778888889999999887553 2334566655422 23345555 46999999999999877643322113455
Q ss_pred HHHHHHhhcChH
Q 038267 234 ALLGAANKYDIA 245 (295)
Q Consensus 234 ~ll~~A~~~~~~ 245 (295)
+|-+++|++.++
T Consensus 174 ELrEACDYLlip 185 (438)
T KOG3840|consen 174 ELREACDYLLVP 185 (438)
T ss_pred HHHhhcceEEee
Confidence 666666665544
No 54
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=60.63 E-value=15 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=22.3
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHhc
Q 038267 233 LALLGAANKYDIADLKDACEESLLED 258 (295)
Q Consensus 233 ~~ll~~A~~~~~~~l~~~c~~~l~~~ 258 (295)
.+++.+|+.|+++.|...|.+++..+
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~n 27 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKN 27 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHH
Confidence 46889999999999999999998875
No 55
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=55.04 E-value=15 Score=33.89 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 259 INSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 259 ~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
+..+|++.++..|.+|..+.|.+.|.+||.+
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~ 215 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRK 215 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5689999999999999999999999999987
No 56
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=53.07 E-value=26 Score=31.75 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=28.7
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 258 DINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 258 ~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
.+..+..++.|.+|.+|+..+|..+.-+|+++
T Consensus 112 ~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~ 143 (620)
T KOG4350|consen 112 GVEEDILLDYLSLAHRYGFIQLETAISEYLKE 143 (620)
T ss_pred cchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 35567788999999999999999999999988
No 57
>PHA03098 kelch-like protein; Provisional
Probab=48.94 E-value=21 Score=33.85 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.7
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 258 DINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 258 ~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
.++.+|+.+++..|++++.+.|++.|.+|+.+
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~ 103 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYIIK 103 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 36788999999999999999999999999987
No 58
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=46.20 E-value=28 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.2
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHhc
Q 038267 234 ALLGAANKYDIADLKDACEESLLED 258 (295)
Q Consensus 234 ~ll~~A~~~~~~~l~~~c~~~l~~~ 258 (295)
+++.+|+.|+.+.|...|.+++..+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5778899999999999999987764
No 59
>PHA02790 Kelch-like protein; Provisional
Probab=45.46 E-value=49 Score=31.04 Aligned_cols=29 Identities=7% Similarity=0.088 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHhc
Q 038267 230 KHRLALLGAANKYDIADLKDACEESLLED 258 (295)
Q Consensus 230 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 258 (295)
+|..+++.+|+.|++++|.+.+.+|+.++
T Consensus 123 ~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 123 EYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred chHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 67999999999999999999999988875
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=43.07 E-value=20 Score=32.75 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=51.0
Q ss_pred eeeeeEEEEEeecC---------CCCccccCCceec--ceeeEEEEEeCCe-----eEEEEeecCCC----CCCCCCceE
Q 038267 8 TISRLAQWRIDNFG---------PCSYKKSDPFKIG--IWNWHLSVEKNRY-----LYVRLFPEPSR----LSKEQPPFA 67 (295)
Q Consensus 8 ~~~~~~~w~I~~~~---------~~~~~~S~~F~~g--g~~W~l~~yp~g~-----~~vsl~l~~~~----~~~~~~v~a 67 (295)
...|+..|+|.+++ .+..+.|+.|... |+.=+.++|-+|. .++++|..... ..-.|+..-
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence 34699999999873 3456899999864 8888888887663 36777775532 244688888
Q ss_pred EEEEEEEeC
Q 038267 68 RFIIRVSNG 76 (295)
Q Consensus 68 ~f~~~l~~~ 76 (295)
+.++.++++
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 888999988
No 61
>PHA02713 hypothetical protein; Provisional
Probab=42.50 E-value=47 Score=31.87 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=30.2
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 258 DINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 258 ~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
.++.+|+.+++..|+.++...|++.|.+||.+
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~ 121 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKD 121 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999987
No 62
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=33.81 E-value=13 Score=32.60 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=33.4
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh-hcccc
Q 038267 258 DINSGNVLERLQEAWLYQLSKLKKGCLTYLFD-FGKIY 294 (295)
Q Consensus 258 ~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~-~~~i~ 294 (295)
.++++|++.++.-++...+..|.+.|+.|+.+ +.+|+
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv 108 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIV 108 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHH
Confidence 57899999999999999999999999999988 76663
No 63
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=27.61 E-value=1.3e+02 Score=29.15 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=29.8
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 258 DINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 258 ~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
.++.+|+.+++.-|..++...+.+.|.+|+.+
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 46788999999999999999999999999986
No 64
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=27.18 E-value=63 Score=29.41 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHhc
Q 038267 230 KHRLALLGAANKYDIADLKDACEESLLED 258 (295)
Q Consensus 230 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 258 (295)
.++...+.+|.+|+++.++..|.++|...
T Consensus 173 kta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 173 KTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 67899999999999999999999988764
No 65
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=27.14 E-value=2.7e+02 Score=20.74 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=54.1
Q ss_pred EECCCCHHHHHHHHHHHhCCC----cccccHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCcHH
Q 038267 203 YIEDMSVESCMALLSYLYGTI----KQEDFWKHRLALLGAANKYDIADLKDACEESLLEDINSGNVLERLQEAWLYQLSK 278 (295)
Q Consensus 203 ~l~~~~~~~f~~~L~~lY~~~----~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~l~~A~~~~~~~ 278 (295)
.+.+.+|+..+.+.+|+|+++ ..+.-...+..|-.+|-.=+.+.++.....-|...++++.+.+++..+.-|.--.
T Consensus 27 ~~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~G~P 106 (123)
T TIGR02425 27 ATTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYAGVP 106 (123)
T ss_pred cccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 356788998899999999753 1221112233333333333456677777777777889999988888877775544
Q ss_pred HHHHHHHHHHh
Q 038267 279 LKKGCLTYLFD 289 (295)
Q Consensus 279 L~~~~~~~i~~ 289 (295)
-...++.-+.+
T Consensus 107 ~a~~al~~~~~ 117 (123)
T TIGR02425 107 AANHAFALAKE 117 (123)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 66
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=24.80 E-value=2.4e+02 Score=20.16 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=36.6
Q ss_pred cEEEEeCC--eEEEeEeeeeccCCHHHHHhhcCcc---CcCccceEEECCCCHHHHHHHHHHH
Q 038267 162 DTVIHTAD--GTLKAHKAVLSASSPVFQSMFHHDL---KEKESSTIYIEDMSVESCMALLSYL 219 (295)
Q Consensus 162 Dv~l~v~~--~~~~~hk~iLa~~S~~F~~~f~~~~---~e~~~~~i~l~~~~~~~f~~~L~~l 219 (295)
-+.+.||+ ++|-+....|. .|.|+.++...- .-...+.|.|+ -+...|+.+|..|
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 35666665 46777666664 689999985422 12235577777 7788888888765
No 67
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=23.89 E-value=1.8e+02 Score=19.54 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=27.4
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 038267 253 ESLLEDINSGNVLERLQEAWLYQLSKLKKGCLTYLFD 289 (295)
Q Consensus 253 ~~l~~~~~~~~~~~~l~~A~~~~~~~L~~~~~~~i~~ 289 (295)
+|+ .++......++.-|...+...|.+.|.++++.
T Consensus 7 ~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~ 41 (78)
T PF01466_consen 7 EFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIAN 41 (78)
T ss_dssp HHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 444 45778889999999999999999999999876
Done!