Query 038269
Match_columns 792
No_of_seqs 334 out of 1921
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 4E-150 8E-155 1339.9 81.2 757 4-777 24-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 9E-124 2E-128 1096.1 57.8 738 19-778 13-767 (769)
3 PRK03562 glutathione-regulated 100.0 1.6E-46 3.4E-51 438.7 45.1 416 29-466 5-421 (621)
4 PRK10669 putative cation:proto 100.0 3.6E-46 7.8E-51 434.4 42.6 382 30-426 7-392 (558)
5 PRK03659 glutathione-regulated 100.0 5.7E-45 1.2E-49 425.0 44.5 414 29-465 5-420 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 1E-43 2.2E-48 393.8 42.8 382 28-427 5-389 (397)
7 PRK05326 potassium/proton anti 100.0 1.1E-38 2.3E-43 371.4 35.0 385 28-427 5-392 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 4.1E-39 9E-44 359.4 -3.7 376 36-423 3-379 (380)
9 TIGR00932 2a37 transporter, mo 100.0 6.5E-34 1.4E-38 302.7 28.5 271 39-324 2-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 7.2E-33 1.6E-37 277.4 30.5 377 32-423 9-389 (408)
11 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 5.1E-28 1.1E-32 278.1 34.5 370 36-422 5-408 (525)
12 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 5E-27 1.1E-31 270.1 37.7 355 31-394 15-386 (810)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 4.5E-25 9.7E-30 246.9 37.0 383 29-423 6-407 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 8.3E-24 1.8E-28 243.0 32.5 388 26-423 6-417 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.9 1.5E-22 3.2E-27 213.0 26.9 373 29-420 7-387 (574)
16 KOG1965 Sodium/hydrogen exchan 99.8 1.1E-17 2.4E-22 184.9 20.4 379 31-425 37-457 (575)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 1.8E-16 3.8E-21 161.9 23.6 348 35-390 20-382 (467)
18 PRK14853 nhaA pH-dependent sod 99.7 1.4E-15 3.1E-20 165.9 31.8 305 83-424 61-397 (423)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 2.2E-12 4.7E-17 138.5 24.8 271 83-391 51-344 (373)
20 PRK14856 nhaA pH-dependent sod 99.3 6.8E-10 1.5E-14 121.2 25.0 298 83-420 67-429 (438)
21 PRK11175 universal stress prot 99.3 3.6E-10 7.9E-15 122.3 22.0 281 446-774 5-299 (305)
22 KOG1966 Sodium/hydrogen exchan 99.2 5.3E-12 1.2E-16 139.4 4.3 385 26-423 39-449 (670)
23 PRK09560 nhaA pH-dependent sod 99.2 3.7E-09 7.9E-14 113.9 24.1 298 83-419 58-382 (389)
24 PRK14855 nhaA pH-dependent sod 99.2 4.6E-09 9.9E-14 114.4 24.4 294 83-419 62-411 (423)
25 PRK14854 nhaA pH-dependent sod 99.1 1.3E-08 2.9E-13 109.0 25.0 299 83-419 55-376 (383)
26 PRK09561 nhaA pH-dependent sod 99.1 1.1E-08 2.4E-13 110.1 23.8 298 83-419 58-381 (388)
27 cd01988 Na_H_Antiporter_C The 99.1 1.2E-09 2.6E-14 102.4 13.8 131 446-600 1-131 (132)
28 PF06965 Na_H_antiport_1: Na+/ 99.0 2.4E-09 5.2E-14 115.1 13.3 289 84-410 55-370 (378)
29 COG3004 NhaA Na+/H+ antiporter 98.8 7.4E-07 1.6E-11 92.2 22.9 295 84-419 62-383 (390)
30 cd01989 STK_N The N-terminal d 98.3 1.1E-05 2.4E-10 77.0 13.1 143 446-604 1-146 (146)
31 cd01987 USP_OKCHK USP domain i 98.2 8.5E-06 1.8E-10 75.5 10.6 121 446-599 1-122 (124)
32 PF00582 Usp: Universal stress 98.1 1.6E-05 3.5E-10 74.1 10.5 133 446-600 4-139 (140)
33 PRK12460 2-keto-3-deoxyglucona 98.1 0.00045 9.7E-09 73.0 21.4 257 92-427 51-309 (312)
34 PRK15456 universal stress prot 97.9 0.00016 3.5E-09 68.8 13.1 134 446-599 4-140 (142)
35 cd01988 Na_H_Antiporter_C The 97.9 0.00016 3.5E-09 67.3 12.5 130 620-774 1-132 (132)
36 PRK15118 universal stress glob 97.9 0.00015 3.3E-09 69.1 12.3 132 446-599 5-136 (144)
37 PRK15005 universal stress prot 97.9 0.00015 3.3E-09 69.0 12.0 137 446-599 4-142 (144)
38 cd00293 USP_Like Usp: Universa 97.9 0.00022 4.7E-09 65.6 12.4 129 446-599 1-129 (130)
39 PF05684 DUF819: Protein of un 97.7 0.026 5.7E-07 62.6 27.1 295 52-397 24-352 (378)
40 PRK09982 universal stress prot 97.7 0.00043 9.3E-09 66.0 11.6 132 446-599 5-136 (142)
41 PF00582 Usp: Universal stress 97.7 0.00055 1.2E-08 63.6 12.1 132 619-773 3-139 (140)
42 PRK11175 universal stress prot 97.7 0.00037 8E-09 75.4 12.3 144 445-605 153-303 (305)
43 cd01989 STK_N The N-terminal d 97.6 0.00081 1.7E-08 64.1 12.2 140 620-775 1-145 (146)
44 PRK10116 universal stress prot 97.6 0.0011 2.5E-08 62.8 12.7 133 446-600 5-137 (142)
45 PF03812 KdgT: 2-keto-3-deoxyg 97.4 0.011 2.3E-07 62.5 18.7 258 92-425 51-313 (314)
46 TIGR00698 conserved hypothetic 97.4 0.11 2.4E-06 56.5 26.8 110 27-140 4-117 (335)
47 COG0385 Predicted Na+-dependen 97.4 0.076 1.6E-06 56.8 24.2 149 82-245 34-190 (319)
48 cd00293 USP_Like Usp: Universa 97.2 0.0056 1.2E-07 56.0 12.7 128 620-773 1-130 (130)
49 cd01987 USP_OKCHK USP domain i 97.2 0.0026 5.6E-08 58.8 10.0 121 620-773 1-123 (124)
50 PRK15005 universal stress prot 97.2 0.0072 1.6E-07 57.3 13.2 137 619-773 3-143 (144)
51 PRK10116 universal stress prot 97.2 0.003 6.4E-08 59.9 10.4 134 619-774 4-138 (142)
52 TIGR00793 kdgT 2-keto-3-deoxyg 97.0 0.047 1E-06 57.4 17.6 257 93-425 52-313 (314)
53 PRK15118 universal stress glob 97.0 0.004 8.7E-08 59.2 9.3 134 619-775 4-139 (144)
54 PF03601 Cons_hypoth698: Conse 96.8 0.11 2.4E-06 55.9 19.7 88 49-140 22-111 (305)
55 PF13593 DUF4137: SBF-like CPA 96.8 0.84 1.8E-05 49.5 26.7 114 85-204 30-147 (313)
56 PRK15456 universal stress prot 96.7 0.037 7.9E-07 52.5 13.5 136 619-774 3-142 (142)
57 COG3180 AbrB Putative ammonia 96.7 1.3 2.8E-05 48.1 27.6 329 30-425 7-350 (352)
58 PRK09982 universal stress prot 96.7 0.019 4.2E-07 54.5 11.4 39 619-657 4-42 (142)
59 COG0798 ACR3 Arsenite efflux p 96.6 0.78 1.7E-05 49.2 23.4 139 56-202 20-163 (342)
60 COG0786 GltS Na+/glutamate sym 96.3 0.54 1.2E-05 51.3 20.6 118 268-388 235-360 (404)
61 COG2855 Predicted membrane pro 96.3 2.1 4.6E-05 46.1 26.3 90 47-140 31-120 (334)
62 PRK03562 glutathione-regulated 96.2 0.11 2.4E-06 61.9 16.3 116 257-378 10-126 (621)
63 PF03390 2HCT: 2-hydroxycarbox 96.1 0.73 1.6E-05 51.2 21.0 284 75-396 77-394 (414)
64 COG3493 CitS Na+/citrate sympo 96.1 0.63 1.4E-05 50.3 19.4 85 308-396 326-413 (438)
65 PF03616 Glt_symporter: Sodium 96.1 1.8 3.9E-05 48.1 24.2 90 275-373 246-342 (368)
66 COG0589 UspA Universal stress 96.1 0.13 2.8E-06 48.7 13.4 142 445-599 6-149 (154)
67 TIGR00932 2a37 transporter, mo 95.9 0.19 4.1E-06 53.4 15.2 141 264-412 4-146 (273)
68 PRK12652 putative monovalent c 95.9 0.067 1.5E-06 58.8 11.5 41 617-657 4-46 (357)
69 TIGR00930 2a30 K-Cl cotranspor 95.8 7.8 0.00017 48.6 32.5 105 443-573 574-683 (953)
70 PRK05274 2-keto-3-deoxyglucona 95.8 0.62 1.4E-05 50.6 18.2 138 281-428 178-318 (326)
71 PF05145 AmoA: Putative ammoni 95.7 2.3 5.1E-05 46.2 22.8 157 258-424 158-316 (318)
72 PRK03659 glutathione-regulated 95.7 0.27 5.9E-06 58.4 16.5 114 258-377 11-125 (601)
73 PRK10669 putative cation:proto 95.5 0.33 7.1E-06 57.3 16.6 133 259-399 13-146 (558)
74 TIGR00783 ccs citrate carrier 95.3 0.82 1.8E-05 49.7 17.1 119 275-396 203-327 (347)
75 TIGR00841 bass bile acid trans 95.2 4.4 9.6E-05 43.4 22.3 52 87-139 9-64 (286)
76 PRK05326 potassium/proton anti 95.1 0.34 7.5E-06 57.2 14.7 118 259-381 13-133 (562)
77 TIGR00832 acr3 arsenical-resis 95.0 6.8 0.00015 42.8 24.9 45 346-390 255-300 (328)
78 COG0475 KefB Kef-type K+ trans 95.0 0.64 1.4E-05 52.3 15.8 154 257-420 11-170 (397)
79 PF03601 Cons_hypoth698: Conse 94.9 0.53 1.1E-05 50.7 14.2 172 259-436 5-184 (305)
80 COG2855 Predicted membrane pro 94.8 0.27 5.8E-06 52.8 11.4 116 270-390 31-146 (334)
81 PF03956 DUF340: Membrane prot 94.7 0.18 3.8E-06 50.5 9.2 127 57-198 2-133 (191)
82 PF06826 Asp-Al_Ex: Predicted 94.4 0.88 1.9E-05 44.6 13.1 113 49-169 19-136 (169)
83 TIGR00210 gltS sodium--glutama 94.0 13 0.00028 41.8 27.5 141 274-420 243-392 (398)
84 PRK03818 putative transporter; 93.7 1.1 2.4E-05 52.6 14.7 129 31-169 8-142 (552)
85 PRK12652 putative monovalent c 93.7 1 2.2E-05 49.6 13.5 131 445-596 6-145 (357)
86 TIGR00844 c_cpa1 na(+)/h(+) an 93.7 1.3 2.7E-05 53.4 14.9 71 307-381 74-146 (810)
87 PLN03159 cation/H(+) antiporte 93.2 1.5 3.2E-05 54.2 15.2 126 43-177 283-413 (832)
88 TIGR00698 conserved hypothetic 92.6 2.8 6.1E-05 45.7 14.7 141 274-421 29-175 (335)
89 PF01758 SBF: Sodium Bile acid 92.5 2.7 5.9E-05 41.9 13.6 106 90-203 2-111 (187)
90 PF03616 Glt_symporter: Sodium 92.3 1.6 3.4E-05 48.6 12.6 118 308-426 66-187 (368)
91 COG0589 UspA Universal stress 92.2 1.6 3.4E-05 41.1 11.1 143 618-775 5-152 (154)
92 TIGR00831 a_cpa1 Na+/H+ antipo 91.9 1.5 3.2E-05 51.3 12.5 115 262-383 8-124 (525)
93 TIGR03802 Asp_Ala_antiprt aspa 91.2 1.6 3.5E-05 51.3 11.8 122 38-171 15-144 (562)
94 TIGR03802 Asp_Ala_antiprt aspa 90.5 1.7 3.8E-05 51.1 11.1 115 50-170 412-531 (562)
95 TIGR01625 YidE_YbjL_dupl AspT/ 90.4 2.4 5.3E-05 40.8 10.1 113 53-171 21-139 (154)
96 TIGR03082 Gneg_AbrB_dup membra 90.1 4.8 0.0001 38.9 12.1 120 263-390 6-127 (156)
97 COG0786 GltS Na+/glutamate sym 87.8 15 0.00032 40.6 14.7 119 307-426 67-188 (404)
98 COG2985 Predicted permease [Ge 87.3 3.1 6.6E-05 46.7 9.4 107 56-172 37-146 (544)
99 TIGR03082 Gneg_AbrB_dup membra 87.1 3.2 6.8E-05 40.2 8.6 93 37-137 3-97 (156)
100 PRK10490 sensor protein KdpD; 86.3 4.8 0.0001 50.4 11.8 123 443-600 249-372 (895)
101 TIGR00210 gltS sodium--glutama 86.2 7.4 0.00016 43.6 12.0 166 33-199 223-393 (398)
102 TIGR00808 malonate_madM malona 86.0 5.6 0.00012 39.4 9.4 106 34-141 18-134 (254)
103 COG1346 LrgB Putative effector 86.0 42 0.00091 34.3 15.8 111 296-421 61-171 (230)
104 PRK04972 putative transporter; 85.9 9.3 0.0002 45.0 13.2 104 49-168 33-140 (558)
105 PRK12460 2-keto-3-deoxyglucona 85.8 3.5 7.5E-05 44.1 8.6 77 56-139 169-245 (312)
106 TIGR00946 2a69 he Auxin Efflux 85.0 12 0.00026 40.7 12.9 133 51-196 180-313 (321)
107 PRK04288 antiholin-like protei 81.9 66 0.0014 33.2 15.6 83 335-421 92-174 (232)
108 PRK04972 putative transporter; 81.7 8.8 0.00019 45.2 10.6 126 38-169 390-525 (558)
109 PRK03818 putative transporter; 80.1 30 0.00066 40.7 14.4 105 56-166 403-513 (552)
110 PF00999 Na_H_Exchanger: Sodiu 79.5 0.28 6E-06 54.8 -2.6 109 264-378 8-122 (380)
111 PF03956 DUF340: Membrane prot 78.7 14 0.0003 37.0 9.4 50 338-387 57-106 (191)
112 TIGR03136 malonate_biotin Na+- 78.6 8.1 0.00018 41.9 8.1 115 305-428 101-217 (399)
113 COG0025 NhaP NhaP-type Na+/H+ 78.5 32 0.00068 39.2 13.5 73 309-385 64-138 (429)
114 COG3329 Predicted permease [Ge 77.7 54 0.0012 34.9 13.4 139 276-422 16-158 (372)
115 COG3263 NhaP-type Na+/H+ and K 77.6 19 0.00041 40.2 10.6 78 303-383 59-136 (574)
116 PF03547 Mem_trans: Membrane t 77.1 13 0.00028 41.5 9.9 106 281-391 11-119 (385)
117 PF03977 OAD_beta: Na+-transpo 76.2 17 0.00036 39.2 9.5 113 307-429 67-181 (360)
118 PRK09903 putative transporter 76.0 36 0.00077 36.9 12.6 109 51-170 171-280 (314)
119 COG1346 LrgB Putative effector 74.8 72 0.0016 32.7 13.2 121 43-175 20-147 (230)
120 PF05145 AmoA: Putative ammoni 74.7 16 0.00035 39.8 9.4 77 32-115 155-233 (318)
121 COG5505 Predicted integral mem 74.2 1.3E+02 0.0028 32.2 25.3 83 308-396 275-357 (384)
122 PRK10490 sensor protein KdpD; 73.4 25 0.00055 44.1 11.9 122 617-773 249-372 (895)
123 PRK03359 putative electron tra 71.2 11 0.00024 39.6 6.8 31 624-654 31-62 (256)
124 PRK12342 hypothetical protein; 70.8 11 0.00023 39.6 6.6 30 624-654 30-59 (254)
125 COG2205 KdpD Osmosensitive K+ 70.3 28 0.00061 42.0 10.5 122 443-597 247-369 (890)
126 COG0679 Predicted permeases [G 67.5 1.9E+02 0.004 31.3 28.6 138 277-421 168-307 (311)
127 TIGR03136 malonate_biotin Na+- 66.8 2.1E+02 0.0045 31.6 19.0 87 31-117 22-133 (399)
128 KOG2310 DNA repair exonuclease 66.3 9 0.00019 43.6 5.1 83 545-631 40-131 (646)
129 TIGR00783 ccs citrate carrier 65.1 44 0.00096 36.6 10.0 99 52-157 203-307 (347)
130 COG2431 Predicted membrane pro 62.7 76 0.0016 33.4 10.6 78 55-139 108-189 (297)
131 PRK15475 oxaloacetate decarbox 61.1 19 0.00041 39.2 6.2 114 306-428 131-251 (433)
132 PRK15476 oxaloacetate decarbox 61.1 19 0.00041 39.2 6.1 114 306-428 131-251 (433)
133 PRK15477 oxaloacetate decarbox 61.1 19 0.00041 39.2 6.1 114 306-428 131-251 (433)
134 PF01012 ETF: Electron transfe 61.1 32 0.00069 33.2 7.6 81 629-733 15-100 (164)
135 TIGR02432 lysidine_TilS_N tRNA 59.9 62 0.0013 31.9 9.6 36 620-655 1-36 (189)
136 COG0679 Predicted permeases [G 56.1 1.8E+02 0.0038 31.5 13.0 85 51-140 166-252 (311)
137 TIGR01109 Na_pump_decarbB sodi 55.4 53 0.0011 35.4 8.2 114 306-429 60-181 (354)
138 TIGR02039 CysD sulfate adenyly 55.1 38 0.00083 36.4 7.4 35 620-654 21-55 (294)
139 COG3180 AbrB Putative ammonia 54.8 1.7E+02 0.0036 32.2 12.2 156 257-423 11-169 (352)
140 TIGR00659 conserved hypothetic 53.7 2.7E+02 0.0058 28.7 15.6 83 335-421 86-168 (226)
141 PRK04288 antiholin-like protei 53.7 2.4E+02 0.0052 29.2 12.5 70 96-172 77-147 (232)
142 TIGR00840 b_cpa1 sodium/hydrog 51.4 86 0.0019 37.0 10.2 74 308-385 69-151 (559)
143 PF13593 DUF4137: SBF-like CPA 51.0 1.2E+02 0.0026 32.9 10.6 139 279-422 7-147 (313)
144 PF05982 DUF897: Domain of unk 50.1 71 0.0015 34.6 8.3 49 91-142 212-265 (327)
145 PF03977 OAD_beta: Na+-transpo 49.4 3.8E+02 0.0083 29.2 21.2 84 33-116 4-96 (360)
146 PRK10711 hypothetical protein; 48.6 1.3E+02 0.0029 31.0 9.8 83 335-421 87-169 (231)
147 PF01889 DUF63: Membrane prote 47.7 3.7E+02 0.0081 28.6 17.6 52 11-67 11-69 (273)
148 TIGR00793 kdgT 2-keto-3-deoxyg 46.8 91 0.002 33.4 8.4 76 56-138 174-249 (314)
149 TIGR01109 Na_pump_decarbB sodi 46.5 4.2E+02 0.0091 28.8 16.3 79 36-116 5-90 (354)
150 PF01171 ATP_bind_3: PP-loop f 46.4 77 0.0017 31.2 7.7 37 620-656 1-37 (182)
151 TIGR01625 YidE_YbjL_dupl AspT/ 46.0 42 0.00092 32.3 5.5 95 278-374 23-121 (154)
152 PF02601 Exonuc_VII_L: Exonucl 44.7 43 0.00093 36.4 6.0 50 685-735 30-87 (319)
153 COG2985 Predicted permease [Ge 44.2 60 0.0013 36.9 6.9 110 55-171 397-511 (544)
154 PRK09903 putative transporter 44.2 3.9E+02 0.0084 28.8 13.4 113 296-418 193-307 (314)
155 PF14563 DUF4444: Domain of un 43.8 3.3 7.2E-05 29.9 -1.8 20 773-792 5-24 (42)
156 PF03812 KdgT: 2-keto-3-deoxyg 43.8 74 0.0016 34.2 7.2 75 56-137 174-248 (314)
157 COG3969 Predicted phosphoadeno 43.5 62 0.0013 35.1 6.5 36 619-654 28-64 (407)
158 PRK05253 sulfate adenylyltrans 43.0 75 0.0016 34.3 7.4 36 619-654 28-63 (301)
159 COG2205 KdpD Osmosensitive K+ 42.5 99 0.0021 37.6 8.7 114 618-762 248-363 (890)
160 KOG0573 Asparagine synthase [A 41.9 1.7E+02 0.0037 33.0 9.8 85 618-716 250-335 (520)
161 PF04172 LrgB: LrgB-like famil 41.9 1.8E+02 0.0039 29.7 9.5 83 335-421 76-158 (215)
162 cd01984 AANH_like Adenine nucl 41.8 30 0.00064 29.2 3.4 48 544-597 35-83 (86)
163 cd01984 AANH_like Adenine nucl 39.3 37 0.0008 28.6 3.6 33 621-654 1-33 (86)
164 COG4827 Predicted transporter 39.2 2.7E+02 0.0058 28.1 9.7 46 87-132 10-57 (239)
165 cd01713 PAPS_reductase This do 38.8 1.7E+02 0.0036 27.7 8.7 34 620-654 1-34 (173)
166 PRK12563 sulfate adenylyltrans 38.2 75 0.0016 34.4 6.4 35 620-654 39-73 (312)
167 PF03547 Mem_trans: Membrane t 37.0 2.6E+02 0.0057 30.9 11.0 133 277-415 244-382 (385)
168 PF02673 BacA: Bacitracin resi 36.8 1.6E+02 0.0034 31.1 8.5 82 345-426 159-241 (259)
169 PF04172 LrgB: LrgB-like famil 36.3 3.6E+02 0.0078 27.6 10.6 70 97-172 62-131 (215)
170 COG2086 FixA Electron transfer 35.2 1.7E+02 0.0038 30.8 8.4 32 623-654 31-63 (260)
171 PF03390 2HCT: 2-hydroxycarbox 35.0 4.6E+02 0.0099 29.6 12.0 103 48-157 266-374 (414)
172 KOG1650 Predicted K+/H+-antipo 34.7 3.1E+02 0.0067 33.8 11.7 82 90-176 314-397 (769)
173 TIGR00946 2a69 he Auxin Efflux 34.7 6.1E+02 0.013 27.3 25.8 134 277-419 182-318 (321)
174 cd01992 PP-ATPase N-terminal d 33.1 2.5E+02 0.0053 27.3 9.0 36 620-655 1-36 (185)
175 COG3763 Uncharacterized protei 33.0 2.1E+02 0.0045 23.6 6.5 38 218-258 8-45 (71)
176 PF03652 UPF0081: Uncharacteri 32.8 1E+02 0.0022 29.0 5.7 60 543-605 37-97 (135)
177 COG3371 Predicted membrane pro 32.1 1.9E+02 0.0041 28.5 7.4 63 50-118 73-135 (181)
178 PRK10711 hypothetical protein; 32.0 5.5E+02 0.012 26.6 11.2 89 95-194 71-160 (231)
179 COG1968 BacA Undecaprenyl pyro 31.3 2.5E+02 0.0053 29.8 8.6 78 348-425 167-244 (270)
180 COG3748 Predicted membrane pro 31.0 3.5E+02 0.0075 29.3 9.5 40 308-350 226-265 (407)
181 PRK10712 PTS system fructose-s 29.9 6.6E+02 0.014 29.7 12.8 23 268-291 306-328 (563)
182 PRK00281 undecaprenyl pyrophos 29.4 2.7E+02 0.0059 29.5 8.8 50 339-388 157-206 (268)
183 PF05684 DUF819: Protein of un 29.4 5.1E+02 0.011 28.9 11.4 96 303-405 52-151 (378)
184 COG4651 RosB Kef-type K+ trans 29.1 7.6E+02 0.017 26.7 13.9 57 51-112 246-302 (408)
185 cd01118 ArsB_permease Anion pe 29.0 8.5E+02 0.018 27.2 19.7 24 43-66 10-33 (416)
186 PF08659 KR: KR domain; Inter 28.5 5.6E+02 0.012 24.9 10.7 85 624-733 4-91 (181)
187 TIGR00659 conserved hypothetic 28.4 6.7E+02 0.015 25.8 12.3 88 96-194 71-159 (226)
188 PF05982 DUF897: Domain of unk 28.1 5.6E+02 0.012 27.9 10.8 82 337-418 55-137 (327)
189 PRK06806 fructose-bisphosphate 27.2 3.4E+02 0.0073 29.0 9.1 112 530-649 17-131 (281)
190 TIGR00832 acr3 arsenical-resis 26.9 8.5E+02 0.018 26.5 13.0 98 319-422 56-157 (328)
191 PF02040 ArsB: Arsenical pump 26.7 9.8E+02 0.021 27.2 22.2 36 160-195 117-152 (423)
192 COG1883 OadB Na+-transporting 26.5 20 0.00043 37.6 -0.3 111 307-429 82-196 (375)
193 TIGR00753 undec_PP_bacA undeca 26.2 3.2E+02 0.007 28.7 8.6 50 339-388 153-202 (255)
194 COG3493 CitS Na+/citrate sympo 26.2 7.5E+02 0.016 27.6 11.3 106 45-157 281-393 (438)
195 PRK05812 secD preprotein trans 25.8 1.1E+03 0.024 27.4 14.1 56 116-171 358-414 (498)
196 COG0385 Predicted Na+-dependen 25.4 7.7E+02 0.017 26.8 11.4 108 309-422 41-151 (319)
197 PRK12933 secD preprotein trans 25.2 1.2E+03 0.026 27.8 13.9 56 116-171 465-522 (604)
198 PRK10660 tilS tRNA(Ile)-lysidi 25.1 5E+02 0.011 29.6 10.7 37 619-655 16-53 (436)
199 PRK04125 murein hydrolase regu 24.9 3.3E+02 0.0072 25.8 7.6 27 29-55 8-34 (141)
200 KOG3826 Na+/H+ antiporter [Ino 23.8 62 0.0013 33.2 2.6 83 36-120 104-192 (252)
201 PRK05274 2-keto-3-deoxyglucona 23.2 5.9E+02 0.013 27.8 10.2 44 94-137 207-250 (326)
202 TIGR03140 AhpF alkyl hydropero 23.0 1.5E+02 0.0033 34.6 6.1 28 625-652 126-154 (515)
203 TIGR02057 PAPS_reductase phosp 23.0 5.8E+02 0.013 26.2 9.7 29 619-648 26-54 (226)
204 PRK01844 hypothetical protein; 22.9 3.9E+02 0.0085 22.2 6.5 33 221-256 11-43 (72)
205 COG1570 XseA Exonuclease VII, 22.9 1.4E+02 0.003 33.8 5.3 50 685-735 151-205 (440)
206 cd01993 Alpha_ANH_like_II This 22.9 3.6E+02 0.0078 26.0 8.0 36 620-655 1-38 (185)
207 PF06826 Asp-Al_Ex: Predicted 22.3 5.4E+02 0.012 25.2 8.8 90 275-367 22-115 (169)
208 PRK00536 speE spermidine synth 22.1 3.3E+02 0.0071 28.8 7.7 10 722-731 138-147 (262)
209 TIGR00841 bass bile acid trans 21.9 6.9E+02 0.015 26.6 10.4 105 313-421 15-120 (286)
210 PRK00207 sulfur transfer compl 21.8 3.7E+02 0.008 24.9 7.3 27 620-646 2-32 (128)
211 KOG1965 Sodium/hydrogen exchan 20.8 3.4E+02 0.0073 31.9 8.0 25 360-384 157-181 (575)
212 PRK00109 Holliday junction res 20.5 1.7E+02 0.0037 27.6 4.8 58 545-605 42-99 (138)
213 PRK00286 xseA exodeoxyribonucl 20.0 1.7E+02 0.0038 33.3 5.7 37 699-735 164-204 (438)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=3.9e-150 Score=1339.95 Aligned_cols=757 Identities=30% Similarity=0.515 Sum_probs=669.7
Q ss_pred CCCCCCCCCCccCCCccc-ccccchHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccc------ccc
Q 038269 4 NSSKNGTSPAQKCKDFVG-VTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIR------NGF 76 (792)
Q Consensus 4 ~~~~~g~~~~~~~~~~~~-~~~~~lp~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~------~lf 76 (792)
+.+|+|.|. |-| ++| ++|++++|+++++++++++++++||+|||++++||++|+++||+.+.. .+|
T Consensus 24 ~~~s~g~~~------g~~pl~~-~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~f 96 (832)
T PLN03159 24 MITTNGIWQ------GDNPLDF-SLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIF 96 (832)
T ss_pred CccCCcccc------cCCcccc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcC
Confidence 566777763 445 789 999999999999999999999999999999999999999999976442 346
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHH
Q 038269 77 ELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYST--HRKIVVAITLSFT 154 (792)
Q Consensus 77 ~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~--~~~~~~al~lg~~ 154 (792)
|.++.+.++.++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+++++++++.. .....+++++|++
T Consensus 97 p~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~a 176 (832)
T PLN03159 97 PLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVA 176 (832)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 66667789999999999999999999999999999999999999999999999988877664321 1223456899999
Q ss_pred HhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269 155 LAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV 234 (792)
Q Consensus 155 ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v 234 (792)
+|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.++...+... ...++.++..+++++++.++
T Consensus 177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~-----~~~l~~~l~~~~f~~~~~~v 251 (832)
T PLN03159 177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTS-----LASLWVLLSSVAFVLFCFYV 251 (832)
T ss_pred HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----hhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887665433211 13456666677788888899
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHH
Q 038269 235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPI 314 (792)
Q Consensus 235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~Pl 314 (792)
+||++.|+.++++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +|+++++.+|+++++.++|+|+
T Consensus 252 ~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPl 330 (832)
T PLN03159 252 VRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPL 330 (832)
T ss_pred HHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888999999999999999999999999999999999999997 7899999999999999999999
Q ss_pred HHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccc
Q 038269 315 FFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNY 394 (792)
Q Consensus 315 fF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~ 394 (792)
||+++|+++|+..+. ++..|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++++.|+
T Consensus 331 FFv~vGl~idl~~l~--~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gv 408 (832)
T PLN03159 331 FFAISGLKTNVTKIQ--GPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEV 408 (832)
T ss_pred HHHHhhheeeHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 999999999997652 344566667778888999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHhhhhHHHHHhhhhhcccCcccccccccCCCCCcceEEEEecCCCChhhHHHHHHHhcCCCCCC
Q 038269 395 ITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPG 474 (792)
Q Consensus 395 i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~~~~~~r~i~~~~~~~elrILvcv~~~~~~~~li~l~~~~~~~~~sp 474 (792)
++++.|++++++++++|.+++|+++++|+|+||+..|++|++|+.++++|+|+|+|+|++++++++++|++++++++++|
T Consensus 409 i~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp 488 (832)
T PLN03159 409 LDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSP 488 (832)
T ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCC
Confidence 99999999999999888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHh
Q 038269 475 VAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAE 554 (792)
Q Consensus 475 ~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~ 554 (792)
+++|+||||||++|++|++++|+..+...........++|+++++|++|++++ ++|+|+++|++|||++||||||++|+
T Consensus 489 ~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~ 567 (832)
T PLN03159 489 ICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCNLAE 567 (832)
T ss_pred ceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHHHHH
Confidence 99999999999999999999887532211000011234799999999999864 47999999999999999999999999
Q ss_pred hcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCCCCccccccccccceeEEEEeccCcChHHH
Q 038269 555 DLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREA 634 (792)
Q Consensus 555 e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~~~~~~~~~~~~~~~~v~v~f~GG~ddreA 634 (792)
||++++||+||||+|+.||++++++..+|.+|++||++||||||||||||.+...+.. .....+||+++|+||||||||
T Consensus 568 d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~-~~~~~~~v~~~F~GG~DDREA 646 (832)
T PLN03159 568 DKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLA-SNQVSHHVAVLFFGGPDDREA 646 (832)
T ss_pred hcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCcccccc-ccccceeEEEEecCCcchHHH
Confidence 9999999999999999999999999999999999999999999999999976433222 345678999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEEeeecCCCCcccc------ccccc-CCcchhhhhhhhhHHHHHHHHHhhcCCCcEEEEEEec
Q 038269 635 LAYASRVARHPAVKLTVIRFLLDNSENPQRR------AATYK-DNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHL 707 (792)
Q Consensus 635 L~~a~rma~~~~v~ltv~r~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~y~e~~v 707 (792)
|+||+||++||++++||+||++.++..+... .++.. ....+++.|+++||++++|||.++..+++|.|+||+|
T Consensus 647 La~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V 726 (832)
T PLN03159 647 LAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVV 726 (832)
T ss_pred HHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEec
Confidence 9999999999999999999997544322110 01111 1123346788999999999999987778999999999
Q ss_pred CChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEeeec
Q 038269 708 ANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHD 777 (792)
Q Consensus 708 ~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~~ 777 (792)
+|++||+++||+|.++|||+||||+|+.+|++|+||+||+||||||||||+|||+||.+++||||||||+
T Consensus 727 ~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 727 SNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred CCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 9999999999999999999999999988899999999999999999999999999999999999999997
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-124 Score=1096.07 Aligned_cols=738 Identities=31% Similarity=0.497 Sum_probs=659.2
Q ss_pred ccc-ccccchHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCcccc------ccccccccHHHHHHHHHHH
Q 038269 19 FVG-VTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPI------RNGFELEMIQTLNYIVEFG 91 (792)
Q Consensus 19 ~~~-~~~~~lp~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~------~~lf~~~~~~~l~~l~~lg 91 (792)
|.| ++| ++|++++|+.+++++++++++++||+|||++++++++||++||+.+. +.+||.++...+++++.+|
T Consensus 13 ~~~~~~~-~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg 91 (769)
T KOG1650|consen 13 GVNPLKY-ALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLG 91 (769)
T ss_pred CCCcccc-ccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHH
Confidence 444 899 99999999999999999999999999999999999999999987543 2467878899999999999
Q ss_pred HHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcc---c--c--hhHHHHHHHHHHHhhccHHHHH
Q 038269 92 MICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYS---T--H--RKIVVAITLSFTLAGSGSHILT 164 (792)
Q Consensus 92 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~---~--~--~~~~~al~lg~~ls~Ts~~vv~ 164 (792)
+.+++|+.|+|+|.+.+||.+|++..+|+.++++|+..|..+...+... . . .....-.++..++|.|+||+++
T Consensus 92 ~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~ 171 (769)
T KOG1650|consen 92 FLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLA 171 (769)
T ss_pred HHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHH
Confidence 9999999999999999999999999999999999999988887665311 1 1 0111357778999999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 038269 165 RVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINN 244 (792)
Q Consensus 165 ~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~ 244 (792)
++|.|+|++++++||+++++++++|+.+|.++++..++....... .....|.++..+++++++.+++||++.|+.+
T Consensus 172 ~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~k 247 (769)
T KOG1650|consen 172 RILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLS----PLRSVWDLVLVIGFVLFLFFVVRPLMKWIIK 247 (769)
T ss_pred HHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCc----chHHHHHHHHHHHHHHheeeehhhhHHHHhh
Confidence 999999999999999999999999999999888877766544321 1235777788888999999999999999999
Q ss_pred hcCCCCcccchhHHHHHHHHHHHHHHhhhhC-chhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccc
Q 038269 245 ENPEGKAMKGTHLVLSLAFMVAVCSCSPFYG-YSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHA 323 (792)
Q Consensus 245 ~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G-~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~ 323 (792)
|+||++++++.++...+..++.++.+++.++ .|+++|||+.|+++|+++|+++.+.+|+|++..++|+|+||+.+|+++
T Consensus 248 r~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~ 327 (769)
T KOG1650|consen 248 RTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKT 327 (769)
T ss_pred cCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccce
Confidence 9999999999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHH
Q 038269 324 KLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASL 403 (792)
Q Consensus 324 d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~l 403 (792)
|+..+. .|......+...+++|+++++.++.++|+|+||++.+|++|++||.+++.+++.+.+.+.++++.|+++
T Consensus 328 di~~i~-----~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~ 402 (769)
T KOG1650|consen 328 DISRIN-----KWGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVM 402 (769)
T ss_pred eHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHH
Confidence 987653 277777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHhhhhhcccCcccccccccCCCCCcceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEe
Q 038269 404 VIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMI 483 (792)
Q Consensus 404 v~~~vl~~~~~~~li~~l~~~~~~~~~~~~r~i~~~~~~~elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLv 483 (792)
+++++++|.++||+++.+|||.+++..|++|++|+.+++.++|++.|+|+++++++++++++++++++++|+++|++|++
T Consensus 403 vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlv 482 (769)
T KOG1650|consen 403 VLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLV 482 (769)
T ss_pred HHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999988789999999999
Q ss_pred eecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEe
Q 038269 484 ELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIIL 563 (792)
Q Consensus 484 el~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liil 563 (792)
||++|+.|++++|...+..... ..+..++++..+|+.|++.+.++|+++++|++||+++||||||++|.++++++|++
T Consensus 483 eL~~~~~~~li~h~~~~~~~~~--~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liil 560 (769)
T KOG1650|consen 483 ELVGRATPLLISHKLRKNGRVE--SRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIIL 560 (769)
T ss_pred ecccccchhhhhhhhccccccc--cccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEe
Confidence 9999999999988753331111 12234678999999999855467999999999999999999999999999999999
Q ss_pred cCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCCCCccccccccccceeEEEEeccCcChHHHHHHHHHHhc
Q 038269 564 PFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVAR 643 (792)
Q Consensus 564 p~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~~~~~~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rma~ 643 (792)
||||+|+.+|+.++.+..+|.+|++++++|||||||+|||| +......+.....++|+++|+||+||||||+|++||++
T Consensus 561 pfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg-~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~ 639 (769)
T KOG1650|consen 561 PFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRG-LRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMAE 639 (769)
T ss_pred ehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecC-cccccceecccceeEEEEEecCChhhHHHHHHHHHHhh
Confidence 99999996668999999999999999999999999999998 32221111233678999999999999999999999999
Q ss_pred CCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHH-HHhhcCCCcEEEE-EEecCChHHHHHHHHhhh
Q 038269 644 HPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEF-YERQVAEGHVAYA-EKHLANSSETFATLRSLE 721 (792)
Q Consensus 644 ~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~-~~~~~~~~~v~y~-e~~v~~~~e~~~~i~~~~ 721 (792)
||.+++||+||+++++..+ ....+++++++|++..+++ +....++.++.|. ||.|+|+.||.+++|+++
T Consensus 640 ~~~v~lTVirf~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~ 710 (769)
T KOG1650|consen 640 NPRVTLTVIRFFPDESKYN---------RKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSIT 710 (769)
T ss_pred CCceEEEEEEeeccchhhc---------ccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhc
Confidence 9999999999998654221 1112478888999999998 5444345578898 699999999999999999
Q ss_pred cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEeeecc
Q 038269 722 GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDF 778 (792)
Q Consensus 722 ~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~~~ 778 (792)
+||||++|||+++.+++.++|++||+||||||+|||.|+|+||.+++||||+|||..
T Consensus 711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY 767 (769)
T ss_pred cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence 999999999999999999999999999999999999999999999999999999864
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.6e-46 Score=438.67 Aligned_cols=416 Identities=16% Similarity=0.171 Sum_probs=335.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269 29 GKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI 108 (792)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 108 (792)
.++.++.+++.++.++..++||+|+|+++|||++|+++||.++. +. ...+.++.++++|++++||.+|+|+|++.+
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg--~i--~~~~~i~~laelGvv~LlF~iGLEl~~~~l 80 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLR--LV--TDVESILHFAEFGVVLMLFVIGLELDPQRL 80 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCccccc--CC--CCHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 58899999999999999999999999999999999999998765 34 345678999999999999999999999999
Q ss_pred hcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038269 109 FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHS 188 (792)
Q Consensus 109 ~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~ 188 (792)
|+.+|+++.++..++++|+++++.++++++++ +..++++|.+++.||++++.++++|+|+++++.||.+++.++++
T Consensus 81 ~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~----~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~ 156 (621)
T PRK03562 81 WKLRRSIFGGGALQMVACGGLLGLFCMLLGLR----WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQ 156 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHH
Confidence 99999999999999999999888877777643 34578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHH
Q 038269 189 DMITMLIICIGAVFVLPQGNNTQ-EQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAV 267 (792)
Q Consensus 189 Di~~~~ll~i~~~~~~~~~~~~~-~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~ 267 (792)
|+.++++++++..+...+..... ..+...++.++.++++++++.++.+|+++|+.++. .+|.++..++++++++
T Consensus 157 Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~~~l~lv~~~ 231 (621)
T PRK03562 157 DIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTAVALFLVFGF 231 (621)
T ss_pred HHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHH
Confidence 99999999887665433221111 11112222333333344455677788888876543 3577788888889999
Q ss_pred HHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHH
Q 038269 268 CSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVIST 347 (792)
Q Consensus 268 ~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~ 347 (792)
+++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+++||++|+..+. ..|+.++.++++.+
T Consensus 232 a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~----~~~~~il~~~~~~~ 305 (621)
T PRK03562 232 GLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLL----ENPLRILILLLGFL 305 (621)
T ss_pred HHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHH----HHHHHHHHHHHHHH
Confidence 999999999999999999999998 78899999999998 7999999999999999987552 23444556666788
Q ss_pred hhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhcc
Q 038269 348 AGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARK 427 (792)
Q Consensus 348 ~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~ 427 (792)
++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|++++|++.+...+...+
T Consensus 306 ~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~~ 385 (621)
T PRK03562 306 AIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQS 385 (621)
T ss_pred HHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887764333222
Q ss_pred cCcccccccccCCCCCcceEEEEecCCCChhhHHHHHHH
Q 038269 428 HAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEI 466 (792)
Q Consensus 428 ~~~~~~r~i~~~~~~~elrILvcv~~~~~~~~li~l~~~ 466 (792)
+....+ . ....++.+.|+++|-++ +..+.+.+.++.
T Consensus 386 ~~~~~~-~-~~~~~~~~~~vII~G~G-r~G~~va~~L~~ 421 (621)
T PRK03562 386 RTEEAR-E-ADEIDEQQPRVIIAGFG-RFGQIVGRLLLS 421 (621)
T ss_pred Hhhhcc-c-ccccccccCcEEEEecC-hHHHHHHHHHHh
Confidence 111111 1 11111224689999975 555655555443
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=3.6e-46 Score=434.40 Aligned_cols=382 Identities=15% Similarity=0.203 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhh
Q 038269 30 KIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIF 109 (792)
Q Consensus 30 ~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 109 (792)
++..++++++++.+++.++||+|+|++++||++|+++||+.+. .+ ...+.++.++++|++++||.+|+|+|++.+|
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg--~~--~~~~~~~~la~lGli~llF~~Gle~d~~~l~ 82 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPG--FV--ADTKLAPELAELGVILLMFGVGLHFSLKDLM 82 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccc--cc--cchHHHHHHHHHHHHHHHHHhHhcCCHHHHH
Confidence 4557788899999999999999999999999999999998765 34 2457789999999999999999999999999
Q ss_pred cCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 038269 110 KPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSD 189 (792)
Q Consensus 110 ~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D 189 (792)
+.++.....+..++++|+++++++++.+++ .+..++++|+++|.||++++.++++|+|+++++.||+++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~D 158 (558)
T PRK10669 83 AVKSIAIPGAIAQIAVATLLGMALSAVLGW----SLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVED 158 (558)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHH
Confidence 998777777888888999888888777754 3355788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC--CCCch-hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHH
Q 038269 190 MITMLIICIGAVFVLPQ--GNNTQ-EQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVA 266 (792)
Q Consensus 190 i~~~~ll~i~~~~~~~~--~~~~~-~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~ 266 (792)
+.++++++++..+.... +.... .......+.++..++++++..++.|++.+|+.++.++.+ .+|.++..+++++++
T Consensus 159 l~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~l~~~l~ 237 (558)
T PRK10669 159 LVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSVLALALG 237 (558)
T ss_pred HHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 99999888776543211 11110 111123445555666777778889999999998876654 467777777777777
Q ss_pred HHHH-hhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHH
Q 038269 267 VCSC-SPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVI 345 (792)
Q Consensus 267 ~~~~-ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~ 345 (792)
+++. ++.+|+|+++|||++|+++|+ +++++++.+...++ .++|+|+||+++|+++|+..+. ..+..++.++++
T Consensus 238 ~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~----~~~~~~~~~~~~ 311 (558)
T PRK10669 238 IAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILI----QQPLAVLATLAI 311 (558)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHH----HHHHHHHHHHHH
Confidence 7764 699999999999999999997 67888888877776 7899999999999999987552 233444556777
Q ss_pred HHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 038269 346 STAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA 425 (792)
Q Consensus 346 ~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~ 425 (792)
.+++|++++++.++++|+++|+++.+|+.|++||+++++++..+++.|+++++.|+.+++++++|++++|++.++..|..
T Consensus 312 ~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~ 391 (558)
T PRK10669 312 IVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYL 391 (558)
T ss_pred HHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred c
Q 038269 426 R 426 (792)
Q Consensus 426 ~ 426 (792)
+
T Consensus 392 ~ 392 (558)
T PRK10669 392 A 392 (558)
T ss_pred H
Confidence 3
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=5.7e-45 Score=425.02 Aligned_cols=414 Identities=14% Similarity=0.170 Sum_probs=331.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269 29 GKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI 108 (792)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 108 (792)
.++.++.+++.++.++.+++||+|+|++++|+++|+++||.++. +++ ..+.+..++++|++++||.+|+|+|++.+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg--~i~--~~~~i~~laelGvv~LLF~iGLel~~~~l 80 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLG--FIS--DVDEILHFSELGVVFLMFIIGLELNPSKL 80 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhcccccc--CCC--cHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 36778999999999999999999999999999999999998765 443 44668899999999999999999999999
Q ss_pred hcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038269 109 FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHS 188 (792)
Q Consensus 109 ~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~ 188 (792)
|+.+|+++.++..++++|+++++.+.++++++ +..++++|++++.||++++.++|+|+|+++++.||++++..+++
T Consensus 81 ~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~----~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~ 156 (601)
T PRK03659 81 WQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFS----WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQ 156 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHH
Confidence 99999999999999999998777766665532 34578889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHH
Q 038269 189 DMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVC 268 (792)
Q Consensus 189 Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~ 268 (792)
|+.++++++++..+...+... ..+...++.++..+++++++.++.+|+++|+.+. +.+|.++..+++++++++
T Consensus 157 Di~~i~ll~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl~~a 229 (601)
T PRK03659 157 DLAVIPALALVPLLAGSADEH--FDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVLGSA 229 (601)
T ss_pred HHHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHH
Confidence 999999988876554322211 0111222222333333444556777888777543 236788888888899999
Q ss_pred HHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHh
Q 038269 269 SCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTA 348 (792)
Q Consensus 269 ~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~ 348 (792)
++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+++||++|+..+. ..|..++.++++.++
T Consensus 230 ~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~----~~~~~il~~~~~~l~ 303 (601)
T PRK03659 230 LFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLY----THLLWVLISVVVLVA 303 (601)
T ss_pred HHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHH----HhHHHHHHHHHHHHH
Confidence 99999999999999999999998 78999999999998 7999999999999999997653 245556666777889
Q ss_pred hhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhh-cc
Q 038269 349 GKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA-RK 427 (792)
Q Consensus 349 ~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~-~~ 427 (792)
+|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++.++++|++++|.+.+...++. ++
T Consensus 304 ~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~~~~~ 383 (601)
T PRK03659 304 VKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLARR 383 (601)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988887776644432 22
Q ss_pred cCcc-cccccccCCCCCcceEEEEecCCCChhhHHHHHH
Q 038269 428 HAPT-KRMALQWLDPSNQLQILLCLHGSQNITSTLNFLE 465 (792)
Q Consensus 428 ~~~~-~~r~i~~~~~~~elrILvcv~~~~~~~~li~l~~ 465 (792)
+... +.+..+ ...+.+.+++.|-++ +-.+.+.+.++
T Consensus 384 ~~~~~~~~~~~-~~~~~~~~vII~G~G-r~G~~va~~L~ 420 (601)
T PRK03659 384 LNGPEEEDEKP-WVEDDKPQVIIVGFG-RFGQVIGRLLM 420 (601)
T ss_pred hcccccccccc-ccccccCCEEEecCc-hHHHHHHHHHH
Confidence 2211 110101 111224689999875 55555544444
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-43 Score=393.80 Aligned_cols=382 Identities=21% Similarity=0.326 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhh
Q 038269 28 SGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYV 107 (792)
Q Consensus 28 p~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~ 107 (792)
...+.|+.++++++.+.++++||+|+|+++||+++|+++||.+.. +..+..+.++.++++|++++||.+|+|+|+++
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~---~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~ 81 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLL---LIIESSEIIELLAELGVVFLLFLIGLEFDLER 81 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccc---ccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH
Confidence 457889999999999999999999999999999999999995443 23367899999999999999999999999999
Q ss_pred hhcCCcc-cchHhHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038269 108 IFKPPTR-DAIVAYGGMLSTFILGCSLTP-FLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAG 185 (792)
Q Consensus 108 l~~~~~~-~~~ia~~~~l~p~~~~~~~~~-~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a 185 (792)
+||++|+ ....+..++..|+.++....+ .++++. ..++++|.+++.||+++++++++|+|.++++.|+++++++
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~----~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~ 157 (397)
T COG0475 82 LKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL----IAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGAL 157 (397)
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 9999999 888888888889888865544 354332 3489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHH
Q 038269 186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMV 265 (792)
Q Consensus 186 ~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l 265 (792)
+++|+.+++++++...+...+..... .++.......++.++..+..|++.+++.|+.... +.+|..+..++++++
T Consensus 158 i~~Di~~i~lLai~~~l~~~g~~~~~----~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~l 232 (397)
T COG0475 158 VFDDIAAILLLAIVPALAGGGSGSVG----FILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLVL 232 (397)
T ss_pred HHHHHHHHHHHHHHHHHccCCCccHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHH
Confidence 99999999999999887665443211 1333333444444444444455555554443221 235788899999999
Q ss_pred HHHHHhhhhCchhhHHHHHHhhhcCCCCcch-HHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHH
Q 038269 266 AVCSCSPFYGYSPILSAFMAGIFFPSEGRMS-KWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIV 344 (792)
Q Consensus 266 ~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~-~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~ 344 (792)
.+++++|.+|+|+++|||++|+++++. +.+ ++++++++++.+++|+|+||+.+|+.+|++.+. +.+..++.++.
T Consensus 233 ~~a~l~e~~gls~ilGAFlaGl~ls~~-~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~----~~~~~~l~~~~ 307 (397)
T COG0475 233 GAAYLAELLGLSMILGAFLAGLLLSES-EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL----ENLLLILLLVA 307 (397)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHhccc-ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh----ccHHHHHHHHH
Confidence 999999999999999999999999984 555 799999999977799999999999999998764 24455777788
Q ss_pred HHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhh
Q 038269 345 ISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGR 424 (792)
Q Consensus 345 ~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~ 424 (792)
+..++|.+++++.++..|+++|+++..|+.+.++|+++++.++.+.+ +.++++.+...+.++++++.+.+.+.+.++++
T Consensus 308 ~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 308 LAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR 386 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999998877 68889999999999999999988888888776
Q ss_pred hcc
Q 038269 425 ARK 427 (792)
Q Consensus 425 ~~~ 427 (792)
..+
T Consensus 387 ~~~ 389 (397)
T COG0475 387 LLK 389 (397)
T ss_pred hhc
Confidence 544
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.1e-38 Score=371.45 Aligned_cols=385 Identities=11% Similarity=0.063 Sum_probs=309.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhh
Q 038269 28 SGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYV 107 (792)
Q Consensus 28 p~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~ 107 (792)
-.++++++++++++.+++.+++|+++|.+++++++|+++||.++.. .+.+..+..+.++++|+++++|..|+|+|++.
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~--i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~ 82 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGG--IQFDNYPLAYLVGNLALAVILFDGGLRTRWSS 82 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCC--cccCcHHHHHHHHHHHHHHHHHcCccCCCHHH
Confidence 3678899999999999999999999999999999999999987652 22245678899999999999999999999999
Q ss_pred hhcCCcccchHhHHHHHHHHHHHH-HHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCC-CCCchhHHHHHHH
Q 038269 108 IFKPPTRDAIVAYGGMLSTFILGC-SLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKI-GKSDIGKLGMAAG 185 (792)
Q Consensus 108 l~~~~~~~~~ia~~~~l~p~~~~~-~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a 185 (792)
+|+++++++.++..++++|++++. ..++++++ .+..++++|+++++||++++.++++|.|+ +++++++++.++|
T Consensus 83 l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~----~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS 158 (562)
T PRK05326 83 FRPALGPALSLATLGVLITAGLTGLFAHWLLGL----DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIES 158 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhh
Confidence 999999999999999999988754 44455543 34568999999999999999999999995 7999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHH
Q 038269 186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMV 265 (792)
Q Consensus 186 ~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l 265 (792)
.+||.++++++.++..+...+.... .+..+..++..+++.++.++++++++.|+.+|.... .++.+..+++++++
T Consensus 159 ~~nD~~ai~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~l~~~l 233 (562)
T PRK05326 159 GSNDPMAVFLTITLIELITGGETGL---SWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILVLAGAL 233 (562)
T ss_pred hcccHHHHHHHHHHHHHHhCCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHH
Confidence 9999999998887766654433211 111223333344455555667778888888776321 24567788888999
Q ss_pred HHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHH
Q 038269 266 AVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVI 345 (792)
Q Consensus 266 ~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~ 345 (792)
++++++|.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|++.+. ...+..+++.+++
T Consensus 234 ~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~---~~~~~~l~i~~~l 310 (562)
T PRK05326 234 LIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL---DIALPALLLALFL 310 (562)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHH
Confidence 9999999999999999999999999865444444555555558899999999999999987553 1123323333456
Q ss_pred HHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccC-hhhHHHHHHHHHHHHhhhhHHHHHhhhh
Q 038269 346 STAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYIT-HTTAASLVIMIFFTIVHTPFVVQNIIGR 424 (792)
Q Consensus 346 ~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~-~~~~~~lv~~~vl~~~~~~~li~~l~~~ 424 (792)
.+++|+++++++.+.++++|||+..+|| .++||.++++++..+...++.+ +..|+++.+++++|+++.++.++.+.|+
T Consensus 311 ~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~ 389 (562)
T PRK05326 311 ILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARK 389 (562)
T ss_pred HHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHH
Confidence 7789999999999999999999999999 5899999999999999988886 4667888888888888888888877766
Q ss_pred hcc
Q 038269 425 ARK 427 (792)
Q Consensus 425 ~~~ 427 (792)
.+-
T Consensus 390 l~l 392 (562)
T PRK05326 390 LGV 392 (562)
T ss_pred cCC
Confidence 543
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=4.1e-39 Score=359.43 Aligned_cols=376 Identities=19% Similarity=0.351 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCccc
Q 038269 36 LAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRD 115 (792)
Q Consensus 36 lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~ 115 (792)
++++.+.+.+.++||+++|.+++|+++|+++||.++. +++++ ....+.++++|+.++||.+|+|+|.+.+||++|++
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~--~~~~~-~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~ 79 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLG--LLEPD-NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRA 79 (380)
T ss_dssp ------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---------
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhh--hccch-hhHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 3445566667789999999999999999999998765 33212 48889999999999999999999999999999999
Q ss_pred chHhHHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Q 038269 116 AIVAYGGMLSTFIL-GCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITML 194 (792)
Q Consensus 116 ~~ia~~~~l~p~~~-~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ 194 (792)
+.+++.++++|+++ ++.+++++. ..++++..++++|.++++||++++.++++|.+..+++.++++++++++||+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~ 158 (380)
T PF00999_consen 80 LALGLVGFLLPFILVGFLLSFFLF-ILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAII 158 (380)
T ss_dssp -----------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTT
T ss_pred cccccceeeehhhHHHHHHHHhhc-cchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhh
Confidence 99999999999988 766664211 1122345589999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhh
Q 038269 195 IICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFY 274 (792)
Q Consensus 195 ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~ 274 (792)
++.+.......+.... .......++..++..++..++.+++.+|+.++. ++.++.++..+++.++..++++|.+
T Consensus 159 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~ 232 (380)
T PF00999_consen 159 LLSILISLAQASGQSS---LGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEIL 232 (380)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred hhhhhhhhhccccccc---ccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccc
Confidence 8888776652111111 011222222233333344444444555554443 1345777888999999999999999
Q ss_pred CchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHH
Q 038269 275 GYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGT 354 (792)
Q Consensus 275 G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~ 354 (792)
|.|+++|+|++|+++++ .+.++++.++++++.++++.|+||+.+|+++|++.+.. +...|...+++.+..+++|++++
T Consensus 233 g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~-~~~~~~~~~~~~~~~~~~k~~~~ 310 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFN-SPSVIILVLLLLIAILLGKFIGV 310 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhccccccccccc-chhhhhhHHHHHHHHHHhhhcee
Confidence 99999999999999995 67778899999999779999999999999999876521 23456666777777779999999
Q ss_pred HHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhh
Q 038269 355 VICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIG 423 (792)
Q Consensus 355 ~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~ 423 (792)
++.+++.|.++||+..+|+.+++||+++++++..+.+.+.++++.+++++.++++|+++.|+.++.+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~ 379 (380)
T PF00999_consen 311 YLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLR 379 (380)
T ss_dssp ------------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------------
T ss_pred ehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998887654
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=6.5e-34 Score=302.73 Aligned_cols=271 Identities=17% Similarity=0.259 Sum_probs=227.2
Q ss_pred HHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchH
Q 038269 39 VLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIV 118 (792)
Q Consensus 39 ~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i 118 (792)
+++.+.+.++||+|+|++++++++|+++||..+. .. +..+.++.++++|+++++|.+|+|+|++.+||++|++..+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg--~i--~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~ 77 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLG--LI--SNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGV 77 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCccccc--CC--CChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999997654 33 2456899999999999999999999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 038269 119 AYGGMLST-FILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIIC 197 (792)
Q Consensus 119 a~~~~l~p-~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~ 197 (792)
+..++++| +++++.++++++. .+..++++|+++++||++++.++++|+|+.+++.|+++++++++||+++++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~ 153 (273)
T TIGR00932 78 GVLQVLVPGVLLGLLLGHLLGL----ALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLA 153 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 7777767766653 234589999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCch
Q 038269 198 IGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYS 277 (792)
Q Consensus 198 i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~ 277 (792)
+.......+.... ..+.+.+...+++.++.+++.++..+|+.++.++.++ +|.++..++.+++..++++|.+|.|
T Consensus 154 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g~s 228 (273)
T TIGR00932 154 LLPLLATSASTEH----VALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLS 228 (273)
T ss_pred HHHHHhcCCCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8876654322111 1233333344445555567788888888887765433 4777888888899999999999999
Q ss_pred hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhccccc
Q 038269 278 PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAK 324 (792)
Q Consensus 278 ~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d 324 (792)
+++|||++|+++++ .+.++++.++++++. ++|.|+||+++|+++|
T Consensus 229 ~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 229 MALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 99999999999998 455788999999997 9999999999999987
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-33 Score=277.37 Aligned_cols=377 Identities=16% Similarity=0.207 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcC
Q 038269 32 VGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKP 111 (792)
Q Consensus 32 ~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~ 111 (792)
-.+..-+.++.+++.++.|+++|+.+||+++|++.||.... +. .+......++++|++++||-+|++++++++...
T Consensus 9 ~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpG--Fv--ad~~La~~LAelGViLLmFgvGLhfslkdLLav 84 (408)
T COG4651 9 TTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPG--FV--ADQTLAPELAELGVILLMFGVGLHFSLKDLLAV 84 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCC--cc--cchhHHHHHHHhhHHHHHHhcchheeHHHHhhH
Confidence 34445567788999999999999999999999999997544 22 345555689999999999999999999999877
Q ss_pred CcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 038269 112 PTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMI 191 (792)
Q Consensus 112 ~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~ 191 (792)
...++.-++.++.+....|..+.+.++++.. ..+.+|.++|..|..|..|.++|.++.+++-||++++--+++|+.
T Consensus 85 k~iAipgAl~qia~at~lg~gL~~~lgws~~----~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~ 160 (408)
T COG4651 85 KAIAIPGALAQIALATLLGMGLSSLLGWSFG----TGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLA 160 (408)
T ss_pred HHHhcchHHHHHHHHHHHHhHHHHHcCCCcc----cceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHH
Confidence 6666666777777777777777777775433 368889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--CCc-hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHH
Q 038269 192 TMLIICIGAVFVLPQG--NNT-QEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVC 268 (792)
Q Consensus 192 ~~~ll~i~~~~~~~~~--~~~-~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~ 268 (792)
.++.+....+++..-+ +.. +.......+.......|+.++.++.|....|+..+..... .+|.+...+++++++.+
T Consensus 161 mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG-srElf~L~vla~ALgVa 239 (408)
T COG4651 161 MVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG-SRELFTLAVLAIALGVA 239 (408)
T ss_pred HHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHh
Confidence 9888877766543221 111 1111223445557788999999999999999988763221 36888888899998887
Q ss_pred H-HhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHH
Q 038269 269 S-CSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVIST 347 (792)
Q Consensus 269 ~-~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~ 347 (792)
+ .++.+|+++.+|||++|+++++ +..+++..+..-++ ++.|.-+||+.+||..|+..+. + ....++...++..
T Consensus 240 ~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~-~---~pl~vlatllii~ 313 (408)
T COG4651 240 FGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILI-Q---QPLAVLATLLIIL 313 (408)
T ss_pred hccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhh-c---chHHHHHHHHHHH
Confidence 7 5678999999999999999997 67777777777776 8999999999999999986552 2 2233455566778
Q ss_pred hhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhh
Q 038269 348 AGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIG 423 (792)
Q Consensus 348 ~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~ 423 (792)
.+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++++.--..++...+++.+..|.+....-+
T Consensus 314 ~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr 389 (408)
T COG4651 314 FGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDR 389 (408)
T ss_pred hhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999777776666667766666666665443
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=5.1e-28 Score=278.12 Aligned_cols=370 Identities=14% Similarity=0.111 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCccc
Q 038269 36 LAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRD 115 (792)
Q Consensus 36 lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~ 115 (792)
.+++.+.....+++|+++|.+++++++|+++||.+.... ++.+ . +.+..+++.+++|..|+++|++.+|++++.+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~-~~~~-~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i 79 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPE-VPLD-R---EIVLFLFLPPLLFEAAMNTDLRELRENFRPI 79 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCC-CCCC-H---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555667889999999999999999999998654321 1111 1 2344578999999999999999999999999
Q ss_pred chHhHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Q 038269 116 AIVAYGGMLSTFILGCSLTPF-LHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITML 194 (792)
Q Consensus 116 ~~ia~~~~l~p~~~~~~~~~~-l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ 194 (792)
..+++.++++|++++..+.++ .+ .++..++++|+++|+||++++.+++++.+ .++++.+++.++|++||..+++
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~----l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alv 154 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILG----IPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALV 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHH
Confidence 999999999988876555443 33 24567999999999999999999999987 5889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhh
Q 038269 195 IICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFY 274 (792)
Q Consensus 195 ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~ 274 (792)
++.++..+..+.+.... ......++..++.+++.++++..+..|+.++..+. +.....+++++++++++++|.+
T Consensus 155 lf~~~~~~~~~~~~~~~---~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~lAe~l 228 (525)
T TIGR00831 155 VFAIAVAVALGKGVFDP---LNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLLAERF 228 (525)
T ss_pred HHHHHHHHHhcCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHh
Confidence 99888776653222211 11122222222222233333334444454433222 2345678888899999999999
Q ss_pred CchhhHHHHHHhhhcCCCCcc---hHHH---HHHHhHHHHhhhhHHHHHhhccccccccccccc-ch------hHHH---
Q 038269 275 GYSPILSAFMAGIFFPSEGRM---SKWT---VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADT-LG------TWGR--- 338 (792)
Q Consensus 275 G~~~~lgafvaGl~l~~~~~~---~~~l---~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~-~~------~~~~--- 338 (792)
|.|+++++|++|+++++..+. ..+. .+.+-.....++.+++|+++|++++........ .. .+..
T Consensus 229 g~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (525)
T TIGR00831 229 HFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTN 308 (525)
T ss_pred CCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 999999999999999975432 1121 223333457889999999999998741111000 00 0110
Q ss_pred HHHHHHHHHhhhHHHHHHHH--Hh-----hCCChHHHHHHHHHhhhhhHHHHHHHHHhhc----------ccccChhhHH
Q 038269 339 FFFLIVISTAGKVVGTVICG--LM-----LGFHWPESVSLGLLLSAKGHFYIFLAIMGAV----------HNYITHTTAA 401 (792)
Q Consensus 339 ~~~li~~~~~~K~l~~~l~~--~~-----~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~----------~~~i~~~~~~ 401 (792)
.+++.......|++.++... +. .+++|||.+.++| .++||.++++++..... +..+-.-++.
T Consensus 309 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~ 387 (525)
T TIGR00831 309 AFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAG 387 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHH
Confidence 11222233445655443321 11 2578999999999 79999999998864321 2234445577
Q ss_pred HHHHHHHHHHhhhhHHHHHhh
Q 038269 402 SLVIMIFFTIVHTPFVVQNII 422 (792)
Q Consensus 402 ~lv~~~vl~~~~~~~li~~l~ 422 (792)
++++++++++.+.|+++|++-
T Consensus 388 vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 388 VILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHhhHHHHHHhcC
Confidence 788888888889999988764
No 12
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=5e-27 Score=270.14 Aligned_cols=355 Identities=12% Similarity=0.140 Sum_probs=259.0
Q ss_pred HHHHHHH-HHHHHHHHHhHcccCCChhHHHHHHHhhccCcccccccccccc----HHHHHHHHHHHHHHHHHHHhhccCh
Q 038269 31 IVGLLLA-YVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEM----IQTLNYIVEFGMICYMFVLGLEMDP 105 (792)
Q Consensus 31 l~~i~li-l~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~----~~~l~~l~~lgl~~llF~~Gle~d~ 105 (792)
++-++.. ++++.+..++.+|+.+|.++.++++|+++||.++. ++++.. ......++++++++.+|.+|++++.
T Consensus 15 ~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~--~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~ 92 (810)
T TIGR00844 15 YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLN--WFNPLSWGNTDSITLEISRILLCLQVFAVSVELPR 92 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhc--cCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3334443 44444455555599999999999999999998765 443221 2333339999999999999999999
Q ss_pred hhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHH---hcCCCCCchhHHHH
Q 038269 106 YVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVIT---NLKIGKSDIGKLGM 182 (792)
Q Consensus 106 ~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~---el~ll~s~~g~l~l 182 (792)
+.+|+.|+..+.++..++.+++++++++.+++-. +..+..++++|+++++|++.....+++ ..+ ++.++..++.
T Consensus 93 ~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~--GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~ 169 (810)
T TIGR00844 93 KYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP--GLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLS 169 (810)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHh
Confidence 9999999999999999999998888777665421 123566899999999999766666665 223 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CCc-hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHH
Q 038269 183 AAGIHSDMITMLIICIGAVFVLPQG---NNT-QEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLV 258 (792)
Q Consensus 183 ~~a~i~Di~~~~ll~i~~~~~~~~~---~~~-~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~ 258 (792)
+++.+||.++++++.+++.+...+. ... ......++|.++..++++++++++.+++..|+.+|.... .+.++.
T Consensus 170 ~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~---~esfla 246 (810)
T TIGR00844 170 CESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIID---RESFLA 246 (810)
T ss_pred hhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhHHHH
Confidence 9999999999987766554443211 111 011234556666666666777777777777776554321 345566
Q ss_pred HHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHH-HHHHHhHHHHhhhhHHHHHhhcccccccccccc--cchh
Q 038269 259 LSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKW-TVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEAD--TLGT 335 (792)
Q Consensus 259 ~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~-l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~--~~~~ 335 (792)
+.++++++++.+++.+|.++++++|++|+++.+...+... -...+......++..++|+++|+.+....+... ....
T Consensus 247 ~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~ 326 (810)
T TIGR00844 247 FYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDV 326 (810)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHH
Confidence 7777888888899999999999999999999985443322 123355556788999999999999986544210 1134
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhh--CCChHHHHHHHHHhhhhhHHHHHHHHHhhcccc
Q 038269 336 WGRFFFLIVISTAGKVVGTVICGLML--GFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNY 394 (792)
Q Consensus 336 ~~~~~~li~~~~~~K~l~~~l~~~~~--~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~ 394 (792)
|..+++.+++.++.|+.++++...+. ..+|+|++++|| .++||+.++.++..+.+.+.
T Consensus 327 w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 327 WRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 66666667778888988888764443 468999999999 89999999999999877654
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.5e-25 Score=246.90 Aligned_cols=383 Identities=14% Similarity=0.122 Sum_probs=294.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269 29 GKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI 108 (792)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 108 (792)
..++++.+++.++.+...+.+|+..|.+..+++.|++.||..+. .+++.....-+.+..+.+..++|..|+++|.+.+
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~--~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l 83 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLN--LISPDLELDPELFLVLFLAILLFAGGLELDLREL 83 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhc--cccccccCChHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 45778888888999999999999999999999999999986554 2322222223333489999999999999999999
Q ss_pred hcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038269 109 FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHS 188 (792)
Q Consensus 109 ~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~ 188 (792)
||+++....++..+++++.+....+.+++ .+ ..++..++.+|+++|+|++.++.++.++.| .++++.++..++|++|
T Consensus 84 ~~~~~~I~~La~~~v~it~~~~g~~~~~l-~~-~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~N 160 (429)
T COG0025 84 RRVWRSILVLALPLVLITALGIGLLAHWL-LP-GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLN 160 (429)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hC-ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 99999999999999999876655555555 23 345667999999999999999999998866 7999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHH
Q 038269 189 DMITMLIICIGAVFVLPQGNNT-QEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAV 267 (792)
Q Consensus 189 Di~~~~ll~i~~~~~~~~~~~~-~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~ 267 (792)
|..+++++.+.......++..+ .......++..+..++.+++.+++.+++.+++.+|.-.. ...+..+.+...+..
T Consensus 161 D~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~---~~~~~~i~L~~~~~~ 237 (429)
T COG0025 161 DGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTS---PLLETLLTLLLAFAA 237 (429)
T ss_pred hHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---hHHHHHHHHHHHHHH
Confidence 9999999998887776443321 122234555555566666777777777887777654211 345678888999999
Q ss_pred HHHhhhhCchhhHHHHHHhhhcC---C--CCcch-HHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHH
Q 038269 268 CSCSPFYGYSPILSAFMAGIFFP---S--EGRMS-KWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFF 341 (792)
Q Consensus 268 ~~~ae~~G~~~~lgafvaGl~l~---~--~~~~~-~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~ 341 (792)
+.++|.+|.|++++++++|+... . ..+.. +...+.+......++.-+.|++.|++++...+.. ..+..+++
T Consensus 238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~---~~~~~~l~ 314 (429)
T COG0025 238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA---LGLLGLLV 314 (429)
T ss_pred HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---hhHHHHHH
Confidence 99999999999999999998774 1 11212 2233334455588899999999999999865531 12566777
Q ss_pred HHHHHHhhhHHHHHHHHHhh------CCChHHHHHHHHHhhhhhHHHHHHHHHhhc------ccccChhhHHHHHHHHHH
Q 038269 342 LIVISTAGKVVGTVICGLML------GFHWPESVSLGLLLSAKGHFYIFLAIMGAV------HNYITHTTAASLVIMIFF 409 (792)
Q Consensus 342 li~~~~~~K~l~~~l~~~~~------~~~~re~~~lg~~l~~kG~v~l~l~~~~~~------~~~i~~~~~~~lv~~~vl 409 (792)
.++..+++|++++++..+.. ..+|+|+++++| -++||.++++++..... +..+..-.+.+++.++++
T Consensus 315 ~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v 393 (429)
T COG0025 315 ALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLV 393 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHH
Confidence 78888999999999988874 379999999999 79999999999987652 223444556777778888
Q ss_pred HHhhhhHHHHHhhh
Q 038269 410 TIVHTPFVVQNIIG 423 (792)
Q Consensus 410 ~~~~~~~li~~l~~ 423 (792)
.++..|++.++...
T Consensus 394 ~g~t~~~l~~~~~~ 407 (429)
T COG0025 394 QGLTLPPLAKKLEV 407 (429)
T ss_pred HhhhHHHHHHHhcc
Confidence 88888888887543
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.93 E-value=8.3e-24 Score=243.04 Aligned_cols=388 Identities=13% Similarity=0.120 Sum_probs=259.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhH-ccc-CCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhcc
Q 038269 26 DGSGKIVGLLLAYVLTNLAHHLL-KPM-HQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEM 103 (792)
Q Consensus 26 ~lp~~l~~i~lil~~~~~~~~l~-~rl-~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~ 103 (792)
..|..+.-..++..++.+...+. |+. ++|..+..++.|+++|+........+.. .-.-+.+-.+.+..++|..|+++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~-~l~~~lf~~~~LPpIlFe~g~~l 84 (559)
T TIGR00840 6 QSPYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPP-TLDSSYFFLYLLPPIVLDAGYFM 84 (559)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccC-CcCHHHHHHHHHHHHHHHHHhcC
Confidence 34544444444444444444444 444 4999999999999999752110001100 01114455567788999999999
Q ss_pred ChhhhhcCCcccchHhHHHHHHHHHHH-HHHHHHhh---cc-cchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchh
Q 038269 104 DPYVIFKPPTRDAIVAYGGMLSTFILG-CSLTPFLH---YS-THRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIG 178 (792)
Q Consensus 104 d~~~l~~~~~~~~~ia~~~~l~p~~~~-~~~~~~l~---~~-~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g 178 (792)
|.+.++++.+.++.+|+.|++++.++. ..++++.. .. ...++..++++|+++|+||+..+..++++.+ .+.++-
T Consensus 85 ~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~ 163 (559)
T TIGR00840 85 PQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLY 163 (559)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchh
Confidence 999999999999999999999976554 44443322 11 1235677999999999999999999999988 689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhH
Q 038269 179 KLGMAAGIHSDMITMLIICIGAVFVLPQ-GNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHL 257 (792)
Q Consensus 179 ~l~l~~a~i~Di~~~~ll~i~~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~ 257 (792)
+++.++|++||..+++++.++..+...+ ..............++...+.+++.+++...+..++.++.... +..+.
T Consensus 164 ~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~ 240 (559)
T TIGR00840 164 IIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEP 240 (559)
T ss_pred hheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHH
Confidence 9999999999999999998887765422 1211110011111111111113333344445555555554332 23456
Q ss_pred HHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCC-----CcchHHHHHHHhHHHHhhhhHHHHHhhccccccccccccc
Q 038269 258 VLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSE-----GRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADT 332 (792)
Q Consensus 258 ~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~-----~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~ 332 (792)
.++++++++++.++|.+|.|++++++++|+++.+. ++..+.-.+.+......++..+.|+++|+.+..... .
T Consensus 241 ~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~---~ 317 (559)
T TIGR00840 241 LFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENH---E 317 (559)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---h
Confidence 77888889999999999999999999999999642 222222223343445778899999999997632211 1
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHh------hCCChHHHHHHHHHhhhhhHHHHHHHHHhhcc-----cccChhhHH
Q 038269 333 LGTWGRFFFLIVISTAGKVVGTVICGLM------LGFHWPESVSLGLLLSAKGHFYIFLAIMGAVH-----NYITHTTAA 401 (792)
Q Consensus 333 ~~~~~~~~~li~~~~~~K~l~~~l~~~~------~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~-----~~i~~~~~~ 401 (792)
+ .|..+++.+++.++.|+++++..++. .+++++|.+.++| .+.||.++++++....+. +.+-..++.
T Consensus 318 ~-~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~ 395 (559)
T TIGR00840 318 W-NWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLV 395 (559)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHe
Confidence 1 34444555566778999998876653 3579999999999 799999999998765433 233334455
Q ss_pred HHHHHHHHHHhhhhHHHHHhhh
Q 038269 402 SLVIMIFFTIVHTPFVVQNIIG 423 (792)
Q Consensus 402 ~lv~~~vl~~~~~~~li~~l~~ 423 (792)
+++++++++..+.+|+++++.-
T Consensus 396 VVl~TvlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 396 VVFFTVIFQGGTIKPLVEVLKV 417 (559)
T ss_pred eehHHHHHHHhhHHHHHHHhCC
Confidence 6667788888888999988754
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.5e-22 Score=213.02 Aligned_cols=373 Identities=11% Similarity=0.064 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269 29 GKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI 108 (792)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 108 (792)
.+++--.+++.++.+.+.++.|+|.|..+-.+..|++.|.-+.+.--| ++...-..++++++++++|..|+..+++.+
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--dNy~~Ay~vg~lALaiILfdgG~~T~lss~ 84 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--DNYPFAYMVGNLALAIILFDGGFGTQLSSF 84 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--CccHHHHHHHHHHHHHHhhcCccCCcHHHH
Confidence 445555567778888999999999999999999999999877653234 567788899999999999999999999999
Q ss_pred hcCCcccchHhHHHHHHHHHHHHH-HHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038269 109 FKPPTRDAIVAYGGMLSTFILGCS-LTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIH 187 (792)
Q Consensus 109 ~~~~~~~~~ia~~~~l~p~~~~~~-~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i 187 (792)
|...++++.++..|++++..+... .+|.++. .|-.++++|+++.+|+.+.+..+|.+.+ ++.+++.+..-++.-
T Consensus 85 r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l----~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGt 159 (574)
T COG3263 85 RVAAGPALSLATLGVLITSGLTGVAAAYLLNL----DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGS 159 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCC
Confidence 999999999999999997665544 4555543 3455899999999999999999998877 688999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHH
Q 038269 188 SDMITMLIICIGAVFVLPQ-GNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVA 266 (792)
Q Consensus 188 ~Di~~~~ll~i~~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~ 266 (792)
||..++++..-++.+...+ ++..+......++ -.+++++.++...++..|+++|+.-+ +..|..++++..+.
T Consensus 160 NDPmAvfLTitlieli~~get~l~~~~ll~f~~----q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la~~Ll 232 (574)
T COG3263 160 NDPMAVFLTITLIELIAGGETNLSWGFLLGFLQ----QFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALAGGLL 232 (574)
T ss_pred CCceeeehhHHHHHHHhccccccCHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHHHHHH
Confidence 9999988765555555544 3344332222223 33445555566677778888887321 45788889999999
Q ss_pred HHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHH
Q 038269 267 VCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVI 345 (792)
Q Consensus 267 ~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~ 345 (792)
.+.+++.+|-|++++.+++|+++.|.+ ..++.+.+..+-+ .++..-+.|...|+..+++++. +.....+++.+..
T Consensus 233 ~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~---~iavPailL~l~m 308 (574)
T COG3263 233 IFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLL---PIAIPAILLSLWM 308 (574)
T ss_pred HHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhh---HhhHHHHHHHHHH
Confidence 999999999999999999999999854 2345566666665 7888888899999999987663 2345556666778
Q ss_pred HHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhh-----HHHHHHHHHHHHhhhhHHHHH
Q 038269 346 STAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT-----AASLVIMIFFTIVHTPFVVQN 420 (792)
Q Consensus 346 ~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~-----~~~lv~~~vl~~~~~~~li~~ 420 (792)
.+++|++++++...=+++++||..+++| .+-||.++++++....-.|.-+.+. |-++..+.+++..+.|+..++
T Consensus 309 ifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~~a~~ 387 (574)
T COG3263 309 IFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAAKK 387 (574)
T ss_pred HHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchHHHHh
Confidence 8899999999988778999999999999 7999999999998876655544333 333344444444445555444
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-17 Score=184.92 Aligned_cols=379 Identities=15% Similarity=0.132 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHHHHhHcccC---CChhHHHHHHHhhccCcc------ccc---c--ccccccHHHHHHHHHHHHHHHH
Q 038269 31 IVGLLLAYVLTNLAHHLLKPMH---QPRITSDIVIGLFLGNIQ------PIR---N--GFELEMIQTLNYIVEFGMICYM 96 (792)
Q Consensus 31 l~~i~lil~~~~~~~~l~~rl~---~P~iv~~IlaGillGp~~------~~~---~--lf~~~~~~~l~~l~~lgl~~ll 96 (792)
++-.+++++++.+..+++++.| +|.-+.-++.|+++|-.- ..+ . .| ++ +.+-.+-+-.+.
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f---~~---~~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVF---SP---DLFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEe---cc---cHHHHHhhchhh
Confidence 3344455666778899999888 999999999999999421 110 0 11 11 123334455688
Q ss_pred HHHhhccChhhhhcCCcccchHhHHHHHHH-HHHHHHHHHHhhc--ccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCC
Q 038269 97 FVLGLEMDPYVIFKPPTRDAIVAYGGMLST-FILGCSLTPFLHY--STHRKIVVAITLSFTLAGSGSHILTRVITNLKIG 173 (792)
Q Consensus 97 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p-~~~~~~~~~~l~~--~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll 173 (792)
|..|.+++.+.++++.......++.|..+. .++|.+++++... ...+.+..++++|+++|+|+|..+..+++|++ .
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-v 189 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-V 189 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-C
Confidence 999999999999999999999999887774 5566666554321 12345667899999999999999999999999 5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-hhcCCCC
Q 038269 174 KSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQE--QIQSAIKMSASLIFQSVFAAKVSPVFMNWIN-NENPEGK 250 (792)
Q Consensus 174 ~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~--~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~-~~~~~~~ 250 (792)
+..+-.++-|++++||..+++++..+......+.+.... .....+..+....+.++..+++...+.+.+. +|.
T Consensus 190 d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~---- 265 (575)
T KOG1965|consen 190 DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRT---- 265 (575)
T ss_pred CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 778889999999999999999998887665443221111 1122333333333333333333333333332 222
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-----cchHHHHHHHhHHHHhhhhHHHHHhhcccc-c
Q 038269 251 AMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-----RMSKWTVGKVNYLLSTLYYPIFFFWMGFHA-K 324 (792)
Q Consensus 251 ~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-----~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~-d 324 (792)
+..+..+.+++.+..+++||.+|+++++..+.+|+.+++.. +..+.-.++.-.+...+..-+-|+++|+.+ +
T Consensus 266 --~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~ 343 (575)
T KOG1965|consen 266 --PSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFD 343 (575)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 34667889999999999999999999999999999999853 223333444444557888889999999633 4
Q ss_pred ccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCC----------ChHHHHHHHHHhhhhhHHHHHHHHHhh-cc-
Q 038269 325 LFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGF----------HWPESVSLGLLLSAKGHFYIFLAIMGA-VH- 392 (792)
Q Consensus 325 ~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~----------~~re~~~lg~~l~~kG~v~l~l~~~~~-~~- 392 (792)
..... .....++....++++++|..-++..+.+.+. +.++-..+.|.-..||.++++++..-. +.
T Consensus 344 ~~k~~---~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~ 420 (575)
T KOG1965|consen 344 FQKHV---YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSP 420 (575)
T ss_pred cccee---eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccc
Confidence 32221 2222345566677788898887777766543 444456666644489999999986432 11
Q ss_pred ----cccChhhHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 038269 393 ----NYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA 425 (792)
Q Consensus 393 ----~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~ 425 (792)
+.+-..+..++++++++-...+.|+++++....
T Consensus 421 ~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~ 457 (575)
T KOG1965|consen 421 HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISV 457 (575)
T ss_pred cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccc
Confidence 344455566677777788888999999876543
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.8e-16 Score=161.95 Aligned_cols=348 Identities=12% Similarity=0.157 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCcccccccccc----ccHHHHHHHHHHHHHHHHHHHhhccChhhhhc
Q 038269 35 LLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFEL----EMIQTLNYIVEFGMICYMFVLGLEMDPYVIFK 110 (792)
Q Consensus 35 ~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~----~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 110 (792)
+.+.+++...-.+-+++-+...+--.+.|+++||.... +|++ +.+.....++.+-+..-.|.++.|+.-+.+.+
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvln--lfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~ 97 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLN--LFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLE 97 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhh--hcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHH
Confidence 34455555556677778888888888999999998765 5532 23455566788888889999999999999999
Q ss_pred CCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhc---CCCCCchhHHHHHHHHH
Q 038269 111 PPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNL---KIGKSDIGKLGMAAGIH 187 (792)
Q Consensus 111 ~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el---~ll~s~~g~l~l~~a~i 187 (792)
+|+....+-..-++.-+.+.+.+.|.+- +. .....++.+++++++|++.....+..+. |..+.++..+..+++..
T Consensus 98 ~w~Si~vlllpVmi~gwlvs~~fvy~l~-p~-lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGc 175 (467)
T KOG4505|consen 98 HWRSIFVLLLPVMIIGWLVSFGFVYALI-PN-LNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGC 175 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-ccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCC
Confidence 9998876655444444444444444332 21 2234578999999999965555555543 33567888899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--Cchh-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHH
Q 038269 188 SDMITMLIICIGAVFVLPQGN--NTQE-QIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFM 264 (792)
Q Consensus 188 ~Di~~~~ll~i~~~~~~~~~~--~~~~-~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~ 264 (792)
||..++..+-+.+-+...+.. ...+ .-...+......+.++.+++++.|...++..++.--+ .|+++.+-++++
T Consensus 176 NDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~~vvl~ 252 (467)
T KOG4505|consen 176 NDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIFYVVLA 252 (467)
T ss_pred CCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHH
Confidence 999999988776665543321 1100 1123444444556677778888898888887765443 478888888899
Q ss_pred HHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHH-HHhHHHHhhhhHHHHHhhcccccccccccc--cchhHHHHHH
Q 038269 265 VAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVG-KVNYLLSTLYYPIFFFWMGFHAKLFTFEAD--TLGTWGRFFF 341 (792)
Q Consensus 265 l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~-kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~--~~~~~~~~~~ 341 (792)
+.++.+.+.+|.+-.+-.|.||.+++.+..+.+...| ++..+...++.-.||++.|..++++++.+. +...|-.+++
T Consensus 253 lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvil 332 (467)
T KOG4505|consen 253 LFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVIL 332 (467)
T ss_pred HHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHH
Confidence 9999999999999999999999999998777766544 677777888889999999999998877542 2345666555
Q ss_pred HHHHHHhhhHHHHHHHHHh-hC-CChHHHHHHHHHhhhhhHHHHHHHHHhh
Q 038269 342 LIVISTAGKVVGTVICGLM-LG-FHWPESVSLGLLLSAKGHFYIFLAIMGA 390 (792)
Q Consensus 342 li~~~~~~K~l~~~l~~~~-~~-~~~re~~~lg~~l~~kG~v~l~l~~~~~ 390 (792)
-+.+.+.-|+-++++.-.+ .. .+|||++++|. .+|.|.-++..+..+.
T Consensus 333 si~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 333 SITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 5555555566655543222 11 37999999999 8999999988887664
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.75 E-value=1.4e-15 Score=165.95 Aligned_cols=305 Identities=13% Similarity=0.177 Sum_probs=200.6
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269 83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL 155 (792)
Q Consensus 83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l 155 (792)
.+....+=|++ +|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-. .++.... ...--+| +-
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~----~~n~~~~---~~~~GW~-Ip 132 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYV----AVNLAGG---GALRGWA-IP 132 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHH----HHhCCch---hhhhhhh-hh
Confidence 34455555555 7888999999766553 233333 4567788888885433 3332110 1112233 34
Q ss_pred hhccHHHHHHHHHhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269 156 AGSGSHILTRVITNLKI-GKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV 234 (792)
Q Consensus 156 s~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v 234 (792)
+.||.+....++..++. .+++++...++.|++||+.+++++++++ ++ +.. +.+.......+ +..
T Consensus 133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~-~i~------~~~L~~a~~~~--~~l-- 197 (423)
T PRK14853 133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TS-ELN------LEALLLALVPL--ALF-- 197 (423)
T ss_pred hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CC-CCC------HHHHHHHHHHH--HHH--
Confidence 56788888899998764 5889999999999999999999988775 22 221 22222211111 111
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-----------cchHHHHHHH
Q 038269 235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-----------RMSKWTVGKV 303 (792)
Q Consensus 235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-----------~~~~~l~~kl 303 (792)
|+.++. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..+++++++
T Consensus 198 ------~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L 265 (423)
T PRK14853 198 ------WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRL 265 (423)
T ss_pred ------HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHH
Confidence 222222 234455555543 35566889999999999999999999521 2357899999
Q ss_pred hHHHHhhhhHHH-HHhhcccccc-cccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHH
Q 038269 304 NYLLSTLYYPIF-FFWMGFHAKL-FTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSL 371 (792)
Q Consensus 304 ~~~~~~~~~Plf-F~~~Gl~~d~-~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~l 371 (792)
++++..+++|+| |+..|.++|. ..+. . ...-.....+++..+++|.++.+..++.. +++|++-..+
T Consensus 266 ~p~V~~~ILPLFAFANaGV~l~~~~~~~-~-~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv 343 (423)
T PRK14853 266 RPLSAGVAVPVFAFFSAGVAIGGLSGLG-A-ALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGV 343 (423)
T ss_pred HHHHHHHHHHHHHHHHhhheecCchhHH-H-HhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHH
Confidence 999999999999 9999999985 3220 0 00111455667788899999988877653 5789999999
Q ss_pred HHHhhhhhHHHHHHHHHhhc-ccccChhhHHHHHHHHHHHHhhhhHHHHHhhhh
Q 038269 372 GLLLSAKGHFYIFLAIMGAV-HNYITHTTAASLVIMIFFTIVHTPFVVQNIIGR 424 (792)
Q Consensus 372 g~~l~~kG~v~l~l~~~~~~-~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~ 424 (792)
|++-+.-=++++.+++.+++ .....++.=-.+++.++++.+++-.+.+...++
T Consensus 344 ~~L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~~ 397 (423)
T PRK14853 344 ALLAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNRK 397 (423)
T ss_pred HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99777777899999999984 332333334445566666666666666654443
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.52 E-value=2.2e-12 Score=138.51 Aligned_cols=271 Identities=15% Similarity=0.190 Sum_probs=170.0
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269 83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL 155 (792)
Q Consensus 83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l 155 (792)
.+....+=|++ +|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++= ..++..... ..--+|+-+
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy----~~~n~~~~~---~~~GW~IP~ 123 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY----LAFNANDPI---TREGWAIPA 123 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----hheecCCCc---ccCcccccc
Confidence 44455555555 6888899999988875 444444 456667788887543 233321100 001112211
Q ss_pred hh-ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269 156 AG-SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV 234 (792)
Q Consensus 156 s~-Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v 234 (792)
+. ++|.+-...+-- +..+..+....++-|++||+.++++.++++. + +.. +.+......++.++
T Consensus 124 ATDiAFalgvlallG-~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~-~i~------~~~L~~a~~~~~~l---- 187 (373)
T TIGR00773 124 ATDIAFALGVMALLG-KRVPLALKIFLLALAIIDDLGAIVIIALFYT----N-DLS------MAALLVAAVAIAVL---- 187 (373)
T ss_pred HHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhhHhheeeecC----C-CCC------HHHHHHHHHHHHHH----
Confidence 11 233333222222 3367888899999999999999998886642 2 221 23332222221111
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc----hHHHHHHHhHHHHhh
Q 038269 235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM----SKWTVGKVNYLLSTL 310 (792)
Q Consensus 235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~----~~~l~~kl~~~~~~~ 310 (792)
++.+|.. +++...+.. ..++..+++ ...|+|+.+|+|++|+++|+..+. .+++++.+++.+..+
T Consensus 188 ------~~~~~~~----v~~~~~y~~-lgvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~l 255 (373)
T TIGR00773 188 ------AVLNRCG----VRRLGPYML-VGVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYL 255 (373)
T ss_pred ------HHHHHcC----CchhhHHHH-HHHHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHH
Confidence 2223321 233333433 333333333 799999999999999999985433 356667777778899
Q ss_pred hhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhhhh
Q 038269 311 YYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSAKG 379 (792)
Q Consensus 311 ~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~kG 379 (792)
++|+| |+..|.++|...+. ....+ ....+++..+++|.++++..++.. +++|++-.-+|++-+.-=
T Consensus 256 ilPlFAFanAGv~l~~~~~~--~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGF 332 (373)
T TIGR00773 256 ILPLFAFANAGVSLQGVSLN--GLTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGF 332 (373)
T ss_pred HHHHHHHHhcCeeeecCcch--hhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999 99999999864332 11123 356778888999999999887653 578999999999777777
Q ss_pred HHHHHHHHHhhc
Q 038269 380 HFYIFLAIMGAV 391 (792)
Q Consensus 380 ~v~l~l~~~~~~ 391 (792)
++++.+++.+++
T Consensus 333 TmSlfI~~LAf~ 344 (373)
T TIGR00773 333 TMSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHHhcC
Confidence 889999998884
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.29 E-value=6.8e-10 Score=121.25 Aligned_cols=298 Identities=14% Similarity=0.175 Sum_probs=179.9
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269 83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL 155 (792)
Q Consensus 83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l 155 (792)
.+....+=|++ +|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++ +..++.+... .--+|+-+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI----Y~~~n~~~~~----~~GWgIPm 138 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI----YFFLNADTPS----QHGFGIPM 138 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH----HhheecCCCc----cCcccccc
Confidence 34455555554 7888999999888775 344444 45666778888754 3333322100 11222222
Q ss_pred hh-ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269 156 AG-SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV 234 (792)
Q Consensus 156 s~-Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v 234 (792)
+. ++|.+-.-.+-- +..++.+....++-|++||+.+++++++++. + +. .+.+..++..++.++
T Consensus 139 ATDIAFAlgvLallG-~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~-~i------~~~~L~~a~~~~~~l---- 202 (438)
T PRK14856 139 ATDIAFALGVIMLLG-KRVPTALKVFLITLAVADDLGAIVVIALFYT----T-NL------KFAWLLGALGVVLVL---- 202 (438)
T ss_pred HHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhhHhheeeecC----C-CC------cHHHHHHHHHHHHHH----
Confidence 21 223222222221 3367788889999999999999998886642 2 22 133333332222211
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc-------------------
Q 038269 235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM------------------- 295 (792)
Q Consensus 235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~------------------- 295 (792)
++.+|.. ++....++++.+++ =+....-|+|+.++..++|+++|..++.
T Consensus 203 ------~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~ 270 (438)
T PRK14856 203 ------AVLNRLN----VRSLIPYLLLGVLL--WFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSS 270 (438)
T ss_pred ------HHHHHcC----CccccHHHHHHHHH--HHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccc
Confidence 1222221 22233344333222 1234578999999999999999964322
Q ss_pred -------------------------hHHHHHHHhHHHHhhhhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhh
Q 038269 296 -------------------------SKWTVGKVNYLLSTLYYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAG 349 (792)
Q Consensus 296 -------------------------~~~l~~kl~~~~~~~~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~ 349 (792)
.+++++.+++.+..+.+|+| |.-.|..++.......++ ....+++..+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~p----v~lGI~~GLvvG 346 (438)
T PRK14856 271 GALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDK----VLLGVILGLCLG 346 (438)
T ss_pred ccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCc----HHHHHHHHHHhc
Confidence 13466677788888999999 889999987542211122 344556777889
Q ss_pred hHHHHHHHHHhh----------CCChHHHHHHHHHhhhhhHHHHHHHHHhhcc--cccChhhHHHHHHHHHHHHhhhhHH
Q 038269 350 KVVGTVICGLML----------GFHWPESVSLGLLLSAKGHFYIFLAIMGAVH--NYITHTTAASLVIMIFFTIVHTPFV 417 (792)
Q Consensus 350 K~l~~~l~~~~~----------~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~--~~i~~~~~~~lv~~~vl~~~~~~~l 417 (792)
|.+|.+..+++. +++|++-.-+|++-+.-=++++.+++.+++. ....++.=..+++.++++.+++-.+
T Consensus 347 K~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~ 426 (438)
T PRK14856 347 KPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALY 426 (438)
T ss_pred chHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887653 5789999999987777778999999998843 3233344444555666666666666
Q ss_pred HHH
Q 038269 418 VQN 420 (792)
Q Consensus 418 i~~ 420 (792)
.++
T Consensus 427 L~~ 429 (438)
T PRK14856 427 LFA 429 (438)
T ss_pred HHH
Confidence 654
No 21
>PRK11175 universal stress protein UspE; Provisional
Probab=99.27 E-value=3.6e-10 Score=122.33 Aligned_cols=281 Identities=14% Similarity=0.122 Sum_probs=158.9
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHH-HHHHHHHhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREE-ITTAVQSYV 524 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~af~~~~ 524 (792)
|||+++...+.....++.+..++... ..+++++|.++-.....+.....+..+. ......+..++ +-+..+.+.
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 79 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQRN--GGKITAFLPIYDFSYEMTTLLSPDEREA---MRQGVISQRTAWIREQAKPYL 79 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHhc--CCCEEEEEeccCchhhhhcccchhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 69999988888888888887777543 3568889987532211111000000000 00000011122 222333332
Q ss_pred hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCC
Q 038269 525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRG 604 (792)
Q Consensus 525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg 604 (792)
..++.++...... .+.+++|++.|+++++||||+|+|.+.... ...+++.-+++++++||+|-++ ..+
T Consensus 80 ---~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~------~~~~gs~~~~l~~~~~~pvlvv-~~~ 147 (305)
T PRK11175 80 ---DAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLE------SVIFTPTDWHLLRKCPCPVLMV-KDQ 147 (305)
T ss_pred ---hcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHH------hhccChhHHHHHhcCCCCEEEe-ccc
Confidence 2357776655544 678999999999999999999999653322 1235666789999999998554 332
Q ss_pred CCCccccccccccceeEEEEeccCcCh-------HHHHHHHHHHhcCC-CeEEEEEEeeecCCCCcccccccccCCcchh
Q 038269 605 FGSIENISRSQAASLNVAVIFIGGKDD-------REALAYASRVARHP-AVKLTVIRFLLDNSENPQRRAATYKDNTAEL 676 (792)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~v~f~GG~dd-------reAL~~a~rma~~~-~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~ 676 (792)
. .....+|+++.=++++. ..|+++|.++++.. +.+++++|+.......... ....... +
T Consensus 148 ~---------~~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~---~~~~~~~-~ 214 (305)
T PRK11175 148 D---------WPEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAI---ELPEFDP-S 214 (305)
T ss_pred c---------cCCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccc---cccccch-h
Confidence 1 11235899998876542 67999999999887 9999999987532210000 0000000 1
Q ss_pred hhhhhh---hHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCc
Q 038269 677 EEEMKI---DDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPE 751 (792)
Q Consensus 677 ~~~~~~---d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~e 751 (792)
+.++.. -++.++++.+.. . +...+..+..|. ....|.+.. .+.||+++|.++.. |+.+| =
T Consensus 215 ~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~~------~~~~~----l 279 (305)
T PRK11175 215 VYNDAIRGQHLLAMKALRQKF-G---IDEEQTHVEEGL-PEEVIPDLAEHLDAELVILGTVGRT------GLSAA----F 279 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-C---CChhheeeccCC-HHHHHHHHHHHhCCCEEEECCCccC------CCcce----e
Confidence 111111 123455554332 1 111222333332 233343332 36999999997531 22221 2
Q ss_pred cchhhhhhhcCCCCCceeEEEEe
Q 038269 752 LGPIGDVLSGSDFLVRTSVLIIK 774 (792)
Q Consensus 752 LG~iGd~las~d~~~~~SvLvvq 774 (792)
+|-..+-++.. .+++||||.
T Consensus 280 lGS~a~~v~~~---~~~pVLvv~ 299 (305)
T PRK11175 280 LGNTAEHVIDH---LNCDLLAIK 299 (305)
T ss_pred ecchHHHHHhc---CCCCEEEEc
Confidence 67777777764 678999995
No 22
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.22 E-value=5.3e-12 Score=139.35 Aligned_cols=385 Identities=14% Similarity=0.169 Sum_probs=241.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHcccC--CChhHHHHHHHhhccCccccccccccccHHHHH--HHHHHHHHHHHHHHhh
Q 038269 26 DGSGKIVGLLLAYVLTNLAHHLLKPMH--QPRITSDIVIGLFLGNIQPIRNGFELEMIQTLN--YIVEFGMICYMFVLGL 101 (792)
Q Consensus 26 ~lp~~l~~i~lil~~~~~~~~l~~rl~--~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~--~l~~lgl~~llF~~Gl 101 (792)
..|..+.-..++.-++.+...+..+++ .|.-...|+.|+++|-........ ....++ .+--.-+-.++|-+|.
T Consensus 39 ~~p~vi~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~---~~~~L~s~vFFlyLLPPIvlDAGY 115 (670)
T KOG1966|consen 39 HIPYVITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATI---APFFLESDVFFLYLLPPIVLDAGY 115 (670)
T ss_pred cCchhhHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcc---ccccccccchhhhhcCHHHhcccc
Confidence 445444444444445555555555555 799889999999999532110000 000111 1111112247789999
Q ss_pred ccChhhhhcCCcccchHhHHHHHH-HHHHHHHHHHHhh---cccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCch
Q 038269 102 EMDPYVIFKPPTRDAIVAYGGMLS-TFILGCSLTPFLH---YSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDI 177 (792)
Q Consensus 102 e~d~~~l~~~~~~~~~ia~~~~l~-p~~~~~~~~~~l~---~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 177 (792)
-|.-+.+..|...++..|+.|.+. .+.+|..++.+-. ++......--+++|...|..+|..+..+..|.. .|.-+
T Consensus 116 fMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~L 194 (670)
T KOG1966|consen 116 FMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVL 194 (670)
T ss_pred cCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEE
Confidence 999999999999999999999887 4445544432221 111112223578899999999999999999998 57778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cch-hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccch
Q 038269 178 GKLGMAAGIHSDMITMLIICIGAVFVLPQGN-NTQ-EQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGT 255 (792)
Q Consensus 178 g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~-~~~-~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~ 255 (792)
--++.|++++||.+.++++-++..+..-+++ ... .... .+..++.+.+.++.++.+...+.....|.+.+ ++-.
T Consensus 195 fI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~-G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrvi 270 (670)
T KOG1966|consen 195 FIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVL-GVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVL 270 (670)
T ss_pred EeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeec-ceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeee
Confidence 8899999999999999999888777665422 110 0000 01111111112222223333333333333322 3334
Q ss_pred hHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCC--CcchHHH---HHHHhHHHHhhhhHHHHHhhccccccccccc
Q 038269 256 HLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSE--GRMSKWT---VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEA 330 (792)
Q Consensus 256 ~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~--~~~~~~l---~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~ 330 (792)
+..+++.+.+.+|..+|.+++|++++-.++|+++... .....+. .+..-...+..-.++.|++.|..+=-..
T Consensus 271 ePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~--- 347 (670)
T KOG1966|consen 271 EPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSN--- 347 (670)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCc---
Confidence 4578888999999999999999999999999998753 1222222 2233333466678889999998774321
Q ss_pred ccchhHHHHHHHHHHHHhhhHHHHHHHHHhh------CCChHHHHHHHHHhhhhhHHHHHHHHHhh-----cccccChhh
Q 038269 331 DTLGTWGRFFFLIVISTAGKVVGTVICGLML------GFHWPESVSLGLLLSAKGHFYIFLAIMGA-----VHNYITHTT 399 (792)
Q Consensus 331 ~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~------~~~~re~~~lg~~l~~kG~v~l~l~~~~~-----~~~~i~~~~ 399 (792)
+.| .|.++.+-++..++.|.+++...+++. +++..|-+.++. =+.||.+.+.+...-. ..+..-..+
T Consensus 348 h~w-d~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp~K~~Fvttt 425 (670)
T KOG1966|consen 348 HHW-DFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVPAKNMFVTTT 425 (670)
T ss_pred cee-ehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCCcccceEeee
Confidence 222 344555556677788999988877664 457788877766 4778888776644322 223334445
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhh
Q 038269 400 AASLVIMIFFTIVHTPFVVQNIIG 423 (792)
Q Consensus 400 ~~~lv~~~vl~~~~~~~li~~l~~ 423 (792)
..++.+++.++.++.-|+++|+.-
T Consensus 426 i~VIfFTVflQGiTIkplvk~L~V 449 (670)
T KOG1966|consen 426 IAVIFFTVFLQGITIKPLVKFLKV 449 (670)
T ss_pred eEEEeeeeeecccchHHHHHHHcc
Confidence 666677888888899999999754
No 23
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.20 E-value=3.7e-09 Score=113.93 Aligned_cols=298 Identities=14% Similarity=0.177 Sum_probs=176.3
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269 83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL 155 (792)
Q Consensus 83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l 155 (792)
.+....+=|++ +|.|.+|+|+..+.+. ++.|++ +.-|+.|+++|.++=. .++..... ..--+|+-+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~----~~n~g~~~---~~~GWgIPm 130 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYA----AFNYNNPE---TLRGWAIPA 130 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh----eeecCCCc---ccCcccccc
Confidence 44555555555 6888899999888775 344444 4566777888875433 33221100 001112222
Q ss_pred hhccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269 156 AGSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV 234 (792)
Q Consensus 156 s~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v 234 (792)
+ |+.+-..-++.=+ +..+..+....++-|++||+.++++.++++. + +.. +.+...+..++.++
T Consensus 131 A-TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~-~i~------~~~L~~a~~~~~~l---- 194 (389)
T PRK09560 131 A-TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----S-DLS------LPALALAAIAIAVL---- 194 (389)
T ss_pred H-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----C-CCC------HHHHHHHHHHHHHH----
Confidence 1 2222222222212 2367788889999999999999998886642 2 121 33333322222211
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc------hHHHHHHHhHHHH
Q 038269 235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM------SKWTVGKVNYLLS 308 (792)
Q Consensus 235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~------~~~l~~kl~~~~~ 308 (792)
++.+|.. ++....+..+..++ =+....-|+|+.++..++|+.+|...+. .+++++++++.+.
T Consensus 195 ------~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~ 262 (389)
T PRK09560 195 ------FLLNRLG----VTKLTPYLIVGAIL--WFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA 262 (389)
T ss_pred ------HHHHHcC----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence 1122221 22333444433222 1233468999999999999999974321 3578889999988
Q ss_pred hhhhHHH-HHhhcccccccccc-cccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhh
Q 038269 309 TLYYPIF-FFWMGFHAKLFTFE-ADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLS 376 (792)
Q Consensus 309 ~~~~Plf-F~~~Gl~~d~~~l~-~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~ 376 (792)
.+.+|+| |.-.|..++-..+. ..++ ....+++..+++|.++.+..+++. +++|++-..+|.+-+
T Consensus 263 ~~IlPlFAlaNAGV~l~~~~~~~~~~p----v~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~G 338 (389)
T PRK09560 263 FAILPLFAFANAGVSLAGISLSSLTSP----VPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCG 338 (389)
T ss_pred hhhHHHHHhhcCCeeecCCcHHhccCc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 8889999 88889888421121 1112 344566777889999988887652 578999999998777
Q ss_pred hhhHHHHHHHHHhhc-ccccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269 377 AKGHFYIFLAIMGAV-HNYITHTTAASLVIMIFFTIVHTPFVVQ 419 (792)
Q Consensus 377 ~kG~v~l~l~~~~~~-~~~i~~~~~~~lv~~~vl~~~~~~~li~ 419 (792)
.-=++++.+++.++. .....++.=..+++.++++.+++-.+.+
T Consensus 339 IGFTmSLFIa~LAF~~~~~~~~~aKigIL~~S~~aai~g~~~l~ 382 (389)
T PRK09560 339 IGFTMSLFIGSLAFGASEELLTEARLGILLGSLLSAILGYLLLR 382 (389)
T ss_pred HHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777899999998883 2112233333334445555555554444
No 24
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.18 E-value=4.6e-09 Score=114.35 Aligned_cols=294 Identities=14% Similarity=0.163 Sum_probs=176.1
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269 83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL 155 (792)
Q Consensus 83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l 155 (792)
.+....+=|++ +|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++ +..++.+... .--+|+-+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI----y~~~n~~~~~----~~GWgIPm 133 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL----YTALNAGGPG----ASGWGVPM 133 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH----HheeecCCCc----cCcccccc
Confidence 45555555655 6888899999988875 344444 45666778888754 3333322100 11222222
Q ss_pred hhccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269 156 AGSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV 234 (792)
Q Consensus 156 s~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v 234 (792)
+ |+.+-...++.=+ +..+..+....++-|++||+.++++.++++. + +.. +.+..++.+++.++
T Consensus 134 A-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~-~i~------~~~L~~a~~~~~~l---- 197 (423)
T PRK14855 134 A-TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----S-GLN------LLALLLAALTWALA---- 197 (423)
T ss_pred H-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----C-CCC------HHHHHHHHHHHHHH----
Confidence 2 2222222222222 3367778889999999999999998886642 2 121 33332222222111
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCc-c------------------
Q 038269 235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGR-M------------------ 295 (792)
Q Consensus 235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~-~------------------ 295 (792)
++.+|.. ++....++.+..++ =+....-|+|+.++..+.|+++|..++ .
T Consensus 198 ------~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~ 265 (423)
T PRK14855 198 ------LLAGRLG----VTSLKIYAVLGALL--WFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEV 265 (423)
T ss_pred ------HHHHHcC----CccccHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchh
Confidence 1122221 22333344333222 123457899999999999999997411 1
Q ss_pred ------------------hHHHHHHHhHHHHhhhhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHH
Q 038269 296 ------------------SKWTVGKVNYLLSTLYYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVI 356 (792)
Q Consensus 296 ------------------~~~l~~kl~~~~~~~~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l 356 (792)
.+++++.+++.+..+.+|+| |+-.|..++-..+ ++ ....+++..+++|.++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~---~p----v~lGI~~GLvvGK~lGI~~ 338 (423)
T PRK14855 266 VGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL---GT----VSLGVFLGLLLGKPLGVVG 338 (423)
T ss_pred hhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC---Cc----HHHHHHHHHHhcchHHHHH
Confidence 24577788888888899999 8888988843221 12 3445567778899999888
Q ss_pred HHHhh----------CCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269 357 CGLML----------GFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ 419 (792)
Q Consensus 357 ~~~~~----------~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~ 419 (792)
.++.. +++|++-.-+|++-+.-=++++.+++.+++.....++.=-.+++.++++.+++..+.+
T Consensus 339 ~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~ 411 (423)
T PRK14855 339 GAWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLW 411 (423)
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87653 5789999999997777778999999998853323333333444555555555554544
No 25
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.14 E-value=1.3e-08 Score=109.02 Aligned_cols=299 Identities=15% Similarity=0.198 Sum_probs=175.7
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269 83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL 155 (792)
Q Consensus 83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l 155 (792)
.+....+=|++ +|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++=.. ++.... ..--+|+-+
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~----~n~~~~----~~~GW~IP~ 126 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS----INHDIK----VINGWAIPS 126 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh----hccCCc----ccCcccccc
Confidence 44555555555 6888899999888765 444444 45667788888754333 322110 011112222
Q ss_pred hh-ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269 156 AG-SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV 234 (792)
Q Consensus 156 s~-Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v 234 (792)
+. ++|.+-...+-- +..+..+.-..++-|++||+.++++.++++. + +.. +.+..+...++.+ .++
T Consensus 127 ATDIAFAlgvLallG-~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~-~i~------~~~L~~A~~~~~~--l~~ 192 (383)
T PRK14854 127 ATDIAFTLGILALLG-TRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----K-SLS------LLSLSLGTLFILA--MII 192 (383)
T ss_pred HHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhhhHhheeeecC----C-Ccc------HHHHHHHHHHHHH--HHH
Confidence 11 333333322222 3367788888899999999999998886642 2 221 2222222211111 111
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCc----chHHHHHHHhHHHHhh
Q 038269 235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGR----MSKWTVGKVNYLLSTL 310 (792)
Q Consensus 235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~----~~~~l~~kl~~~~~~~ 310 (792)
+.|+.. ++....+.++..++ =+....-|+|+.++..+.|+++|...+ -.+++++++++.+..+
T Consensus 193 -------~nr~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~ 259 (383)
T PRK14854 193 -------CNRIFK----INRSSVYVVLGFFA--WFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYF 259 (383)
T ss_pred -------HHHhcC----CceehHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHh
Confidence 122111 22233343333221 223457899999999999999997321 1357888999999999
Q ss_pred hhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhhhh
Q 038269 311 YYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSAKG 379 (792)
Q Consensus 311 ~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~kG 379 (792)
.+|+| |.-.|..++-..+.. ..-.....+++..+++|.++.+..+++. +++|++-..+|++-+.-=
T Consensus 260 IlPlFA~aNAGV~l~~~~~~~---~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGF 336 (383)
T PRK14854 260 ILPVFAFANAGISFSGISFSI---LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGF 336 (383)
T ss_pred hHHHHHhhcCCeeeccCcHHh---hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999 888898884211211 0112344556777889999988887652 568999999999777777
Q ss_pred HHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269 380 HFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ 419 (792)
Q Consensus 380 ~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~ 419 (792)
++++.+++.+++.....++.=-.+++.++++.+++-.+.+
T Consensus 337 TmSLFIa~LAF~~~~~~~~aKigIL~gS~~aai~G~~~l~ 376 (383)
T PRK14854 337 TMSLFIGVLAFNDTHLLNAIKIGVVVGSVLSGFFGYIVLR 376 (383)
T ss_pred HHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998853212223333333445555555554443
No 26
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.13 E-value=1.1e-08 Score=110.08 Aligned_cols=298 Identities=15% Similarity=0.204 Sum_probs=175.5
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269 83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL 155 (792)
Q Consensus 83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l 155 (792)
.+....+=|++ +|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++=. .++.+... ..--+|+-+
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~----~~n~~~~~---~~~GWaIP~ 130 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYL----LFNYADPV---TREGWAIPA 130 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHh----heecCCCc---ccCcccccc
Confidence 34555555555 6888899999988875 344444 4566677888875433 33221100 001112111
Q ss_pred hhccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269 156 AGSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV 234 (792)
Q Consensus 156 s~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v 234 (792)
+ |+.+-..-++.=+ +..+..+....++-|++||+.++++.++++. + +. ++.+..+...++.++
T Consensus 131 A-TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~-~i------~~~~L~~a~~~~~~l---- 194 (388)
T PRK09561 131 A-TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----S-DL------SMVSLGVAAVAIAVL---- 194 (388)
T ss_pred H-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----C-Cc------cHHHHHHHHHHHHHH----
Confidence 1 2222122222212 3367788899999999999999998886642 2 22 133332222221111
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc----hHHHHHHHhHHHHhh
Q 038269 235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM----SKWTVGKVNYLLSTL 310 (792)
Q Consensus 235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~----~~~l~~kl~~~~~~~ 310 (792)
++.+|.. ++....+.++..++ =+....-|+|+.++..+.|+.+|...+. .+++++++++.+..+
T Consensus 195 ------~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~ 262 (388)
T PRK09561 195 ------AVLNLCG----VRRTSVYILVGVVL--WVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFL 262 (388)
T ss_pred ------HHHHHcC----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhe
Confidence 1122221 22333444433222 2234578999999999999999974221 367889999999999
Q ss_pred hhHHH-HHhhcccccccccc-cccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhhh
Q 038269 311 YYPIF-FFWMGFHAKLFTFE-ADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSAK 378 (792)
Q Consensus 311 ~~Plf-F~~~Gl~~d~~~l~-~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~k 378 (792)
.+|+| |.-.|..++-..+. ..++ ....+++..+++|.++.+..+++. +++|++-.-+|++-+.-
T Consensus 263 IlPlFAfaNAGV~l~~~~~~~~~~p----v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIG 338 (388)
T PRK09561 263 ILPLFAFANAGVSLQGVTLDGLTSP----LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIG 338 (388)
T ss_pred eHHHHHhhcCCeeeccCcHHhhcCc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999 88888888321121 1112 334556777889999988887652 56899999999877777
Q ss_pred hHHHHHHHHHhhcc--cccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269 379 GHFYIFLAIMGAVH--NYITHTTAASLVIMIFFTIVHTPFVVQ 419 (792)
Q Consensus 379 G~v~l~l~~~~~~~--~~i~~~~~~~lv~~~vl~~~~~~~li~ 419 (792)
=++++.+++.+++. ....++.=-.+++.++++.+++..+.+
T Consensus 339 FTmSLFIa~LAF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~ 381 (388)
T PRK09561 339 FTMSIFIASLAFGGVDPELINYAKLGILIGSLLSAVIGYSWLR 381 (388)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999988852 212222333333445555555554444
No 27
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.11 E-value=1.2e-09 Score=102.38 Aligned_cols=131 Identities=14% Similarity=0.244 Sum_probs=98.5
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
|||+|+.+.++.+.+++.+..+++. .+.+++++|+++.+....+- .. + ...+..++.++.+.....
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~~---~~--------~-~~~~~~~~~~~~~~~~~~ 66 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSPS---QL--------E-VNVQRARKLLRQAERIAA 66 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCcc---hh--------H-HHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999865 45689999999976533210 00 0 112234556666665554
Q ss_pred ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269 526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL 600 (792)
Q Consensus 526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl 600 (792)
..++.+++.+..+ .+..++||+.|++.++|+|++|.|+++... +..+++.+.+|++++||+|.|+
T Consensus 67 --~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~------~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 67 --SLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLR------DRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred --hcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcc------ceecCchHHHHHhcCCCCEEEe
Confidence 2357788888777 679999999999999999999999765432 2357788899999999998764
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=99.02 E-value=2.4e-09 Score=115.11 Aligned_cols=289 Identities=17% Similarity=0.228 Sum_probs=159.2
Q ss_pred HHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHh
Q 038269 84 LNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLA 156 (792)
Q Consensus 84 l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls 156 (792)
+....+=|++ +|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.+ ++..++..... ..--+|+- .
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal----Iyl~~n~~~~~---~~~GW~IP-~ 126 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL----IYLAFNAGGPE---AAHGWAIP-M 126 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH----HHGGG--SSTT---HHHHTSSS-S
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH----HHheeecCCCC---cCceEEec-c
Confidence 4444555554 7888899999888775 444544 3455667777764 33344332110 11222322 2
Q ss_pred hccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 038269 157 GSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVS 235 (792)
Q Consensus 157 ~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~ 235 (792)
.|+.+-...++.=+ +..+..+....++-|++||+.++++.++++. + +. ++.+......++.+ .
T Consensus 127 ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~-~i------~~~~L~~a~~~~~~--l--- 190 (378)
T PF06965_consen 127 ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----D-GI------SLLWLLLAAAALLL--L--- 190 (378)
T ss_dssp ---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------------HHHHHHHHHHHHH--H---
T ss_pred cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----C-CC------CHHHHHHHHHHHHH--H---
Confidence 23333334444323 3357778899999999999999998887652 1 11 13333222221111 1
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcch--------HHHHHHHhHHH
Q 038269 236 PVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMS--------KWTVGKVNYLL 307 (792)
Q Consensus 236 r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~--------~~l~~kl~~~~ 307 (792)
|..+|.. ++....+..+.. ..=+....-|+|+.++..+.|+.+|..++.+ +++++++++.+
T Consensus 191 -----~~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v 259 (378)
T PF06965_consen 191 -----FVLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV 259 (378)
T ss_dssp -----HHHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred -----HHHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence 1122221 122333433322 2222345789999999999999999865442 47888889998
Q ss_pred HhhhhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhh
Q 038269 308 STLYYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLS 376 (792)
Q Consensus 308 ~~~~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~ 376 (792)
..+.+|+| |+-.|..++-..+.. . .-.....+++..+++|.++.+..++.. +++|++-..+|.+-+
T Consensus 260 ~~~IlPlFAlaNAGV~l~~~~~~~--~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaG 336 (378)
T PF06965_consen 260 AFVILPLFALANAGVSLSGSSLGD--L-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAG 336 (378)
T ss_dssp HHTHHHHHHHHHS----SSS---T--H-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT
T ss_pred hhhhHHhHhheeCceEEecCchHh--h-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 88999999 899999888543321 1 112223446677889999988876552 468899888888777
Q ss_pred hhhHHHHHHHHHhhcccccChhhHHHHHHHHHHH
Q 038269 377 AKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFT 410 (792)
Q Consensus 377 ~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~ 410 (792)
.-=++++.+++.+++.....++.--.+++.++++
T Consensus 337 IGFTmSLFIa~LAF~~~~~~~~aK~gIL~~S~~a 370 (378)
T PF06965_consen 337 IGFTMSLFIAGLAFDDPALQNAAKLGILIGSLLA 370 (378)
T ss_dssp --HHHHHHHHHHHSTT-SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHHHHHHHH
Confidence 7778999999999887433333333333333333
No 29
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.84 E-value=7.4e-07 Score=92.17 Aligned_cols=295 Identities=14% Similarity=0.186 Sum_probs=172.6
Q ss_pred HHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHh
Q 038269 84 LNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLA 156 (792)
Q Consensus 84 l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls 156 (792)
+...-+=|++ +|.+.+|+|+..+.+. ++++++ ..-|+.|++.|..+ +..++.... .. .--++ +-+
T Consensus 62 l~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p-~~--~~GWa-IP~ 133 (390)
T COG3004 62 LLLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDP-AT--LEGWA-IPM 133 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCCh-hh--hcCcC-ccc
Confidence 3444455555 5667799999988886 455544 34555667777643 333433210 00 00111 112
Q ss_pred hccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 038269 157 GSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVS 235 (792)
Q Consensus 157 ~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~ 235 (792)
.|+.+-...++.=+ +..++.+.-..++-+++||+-++++.++.+. .+.+ +.+...+.++..+ .
T Consensus 134 ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt-----~~Ls------~~al~~a~~~i~v-L---- 197 (390)
T COG3004 134 ATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT-----TDLS------MAALGIAALAIAV-L---- 197 (390)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc-----CCcc------HHHHHHHHHHHHH-H----
Confidence 23332233333322 3478888899999999999999988887642 2221 2222221111111 1
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc----hHHHHHHHhHHHHhhh
Q 038269 236 PVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM----SKWTVGKVNYLLSTLY 311 (792)
Q Consensus 236 r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~----~~~l~~kl~~~~~~~~ 311 (792)
..++++.- +....+++...++-.+ -..-|+|..++..+.|+.+|-..+. -+++++.+.+.+..+.
T Consensus 198 -~~lN~~~v--------~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~I 266 (390)
T COG3004 198 -AVLNRLGV--------RRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFI 266 (390)
T ss_pred -HHHHHhCc--------hhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHH
Confidence 11233321 1222333333332222 2467999999999999999965432 3577888888888999
Q ss_pred hHHH-HHhhccccc---ccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhh
Q 038269 312 YPIF-FFWMGFHAK---LFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSA 377 (792)
Q Consensus 312 ~Plf-F~~~Gl~~d---~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~ 377 (792)
+|+| |.-.|..++ .+.+ .-...+.+++..+++|.++++..++.. +.+|++-..++++.+.
T Consensus 267 lPlFaFaNAGvsl~g~~~~~l------~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI 340 (390)
T COG3004 267 LPLFAFANAGVSLQGVSLSGL------TSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI 340 (390)
T ss_pred HHHHHHccCCccccccccccc------ccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh
Confidence 9999 888888776 2222 122345567778899999998887653 5689999999887777
Q ss_pred hhHHHHHHHHHhhccc-ccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269 378 KGHFYIFLAIMGAVHN-YITHTTAASLVIMIFFTIVHTPFVVQ 419 (792)
Q Consensus 378 kG~v~l~l~~~~~~~~-~i~~~~~~~lv~~~vl~~~~~~~li~ 419 (792)
.=++++.+.+.+++.. ......--.+.....++.+++-...+
T Consensus 341 GFTMSlFI~~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~ 383 (390)
T COG3004 341 GFTMSLFIASLAFGSEDELQTAAKLGILVGSFISAILGYSYLR 383 (390)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899988887653 22222222333344444444444433
No 30
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.28 E-value=1.1e-05 Score=77.05 Aligned_cols=143 Identities=10% Similarity=0.190 Sum_probs=86.9
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
+||+++...++....++.+..+... ....++++|+++.+... +. ................+..++.++.+....+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSI-PS--SSGKLEVASAYKQEEDKEAKELLLPYRCFCS 75 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccC-CC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899998888888888888887754 34689999998753211 10 0000000000000111122333333332222
Q ss_pred ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchh-HHHHHHhhhCC--CceEEEec
Q 038269 526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFR-YVNRKLLRNAT--CSVGILVD 602 (792)
Q Consensus 526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~-~~n~~vl~~ap--CsVgIlVd 602 (792)
..++.++...... .+..+.|++.|++.++|+|+||-|.+...... .++ ++-++|+++|| |+| ++|.
T Consensus 76 --~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~------~~gssva~~Vi~~a~~~c~V-lvv~ 144 (146)
T cd01989 76 --RKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMK------FKKSDVASSVLKEAPDFCTV-YVVS 144 (146)
T ss_pred --hcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeec------ccCCchhHHHHhcCCCCceE-EEEe
Confidence 2346666655544 57899999999999999999999866433211 233 47789999999 998 4465
Q ss_pred CC
Q 038269 603 RG 604 (792)
Q Consensus 603 rg 604 (792)
+|
T Consensus 145 ~~ 146 (146)
T cd01989 145 KG 146 (146)
T ss_pred Cc
Confidence 54
No 31
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.23 E-value=8.5e-06 Score=75.52 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=84.1
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
|||+|+...+.....++.+..++.. .+..++++|+++-... + . .+..++.++.+....+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~----------~-------~~~~~~~l~~~~~~~~ 59 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R----------L-------SEAERRRLAEALRLAE 59 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c----------C-------CHHHHHHHHHHHHHHH
Confidence 6899999889999999999988865 3467999999763210 0 0 0112334444444443
Q ss_pred ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhC-CCceEE
Q 038269 526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNA-TCSVGI 599 (792)
Q Consensus 526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~a-pCsVgI 599 (792)
. .++. +.+..+ .+..+.|++.+++.++|+|++|.|.+..... ..++++.++++++| ||+|-|
T Consensus 60 ~--~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~------~~~Gs~~~~v~~~a~~~~v~v 122 (124)
T cd01987 60 E--LGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRE------LFRGSLVDRLLRRAGNIDVHI 122 (124)
T ss_pred H--cCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHH------HhcccHHHHHHHhCCCCeEEE
Confidence 2 2233 334445 6789999999999999999999997644321 23667789999999 999754
No 32
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.13 E-value=1.6e-05 Score=74.12 Aligned_cols=133 Identities=24% Similarity=0.277 Sum_probs=86.1
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHH---H
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQ---S 522 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~ 522 (792)
|||+|+.+.++....++.+..+... ....++++|+++.......-..... ......+......+ .
T Consensus 4 ~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 71 (140)
T PF00582_consen 4 RILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDE----------ESEEEAEEEEQARQAEAE 71 (140)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeecccccccccccccc----------ccccccchhhhhhhHHHH
Confidence 7999998888888998888887754 4578999999997765443211000 00000011000000 1
Q ss_pred hhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269 523 YVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL 600 (792)
Q Consensus 523 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl 600 (792)
... ..+.........+ .+..+.|+..+++.++|+|++|.|++....+ ..++++.+++++++||+|-|+
T Consensus 72 ~~~--~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~------~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 72 EAE--AEGGIVIEVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGLER------LLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHH--HHTTSEEEEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTT------SSSHHHHHHHHHHTSSEEEEE
T ss_pred HHh--hhccceeEEEEEe--eccchhhhhccccccceeEEEeccCCCCccC------CCcCCHHHHHHHcCCCCEEEe
Confidence 111 1123333344445 6899999999999999999999997433322 348899999999999998653
No 33
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.11 E-value=0.00045 Score=72.98 Aligned_cols=257 Identities=11% Similarity=0.126 Sum_probs=146.2
Q ss_pred HHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcC
Q 038269 92 MICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLK 171 (792)
Q Consensus 92 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ 171 (792)
+..++|-.|-++|++...+..||...+-..-++++.+++.++..+++..... .-..+.+-++++.+.-..=..+..|++
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~-Gls~laiiaa~~~~Ng~ly~al~~~yG 129 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIF-GLSGLAIVAAMSNSNGGLYAALMGEFG 129 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccccc-chHHHHHHHHHhcCcHHHHHHHHHHcC
Confidence 3467899999999999988888888888888888999999988888642111 112355556666666666667777877
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCc
Q 038269 172 IGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKA 251 (792)
Q Consensus 172 ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~ 251 (792)
-++|.|- ..++++ ..+ +... .+++.. .++.+ .|
T Consensus 130 -~~~d~gA-------------~~~~sl-----~~G----------Pf~t---m~aLga----------~gLA~-ip---- 162 (312)
T PRK12460 130 -DERDVGA-------------ISILSL-----NDG----------PFFT---MLALGA----------AGLAN-IP---- 162 (312)
T ss_pred -CHhhhhH-------------Hhhhhh-----ccC----------cHHH---HHHHHH----------HHHhc-CC----
Confidence 3455542 222211 111 1111 111111 11111 11
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccc
Q 038269 252 MKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEAD 331 (792)
Q Consensus 252 ~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~ 331 (792)
. ...+. .+=+++.|+++.|.. +.+.+.+++= ..+.+|++-+..|.++|++++...
T Consensus 163 ---~--~~lv~----------------lilpILiGmilGNld---~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~ 217 (312)
T PRK12460 163 ---I--MALVA----------------ALLPLVLGMILGNLD---PDMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA 217 (312)
T ss_pred ---h--HHHHH----------------HHHHHHHHHHHhccc---hhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh
Confidence 0 00000 222556777777632 2344555543 456899999999999999766321
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHH--HHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHH
Q 038269 332 TLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLG--LLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFF 409 (792)
Q Consensus 332 ~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg--~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl 409 (792)
+ +. .+++.++..+.-....+...|++|.+.+-+..+| ..-+.-|...++.+. ...+..-+..-..+-.++++
T Consensus 218 G---~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAad--P~~~~~~~~Ataqvaa~viv 291 (312)
T PRK12460 218 G---LA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAAD--PSLAPVAAAATAQVAASVIV 291 (312)
T ss_pred C---hH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHHH
Confidence 1 21 2222233333445555666688898888887777 432222333332222 22222223333334557788
Q ss_pred HHhhhhHHHHHhhhhhcc
Q 038269 410 TIVHTPFVVQNIIGRARK 427 (792)
Q Consensus 410 ~~~~~~~li~~l~~~~~~ 427 (792)
|.+++|.+..|.+|+.++
T Consensus 292 Tail~P~~t~~~~k~~~~ 309 (312)
T PRK12460 292 TAILTPLLTSWVAKKEAK 309 (312)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 888999999998887654
No 34
>PRK15456 universal stress protein UspG; Provisional
Probab=97.92 E-value=0.00016 Score=68.78 Aligned_cols=134 Identities=10% Similarity=0.097 Sum_probs=80.6
Q ss_pred eEEEEecCC--CChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269 446 QILLCLHGS--QNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY 523 (792)
Q Consensus 446 rILvcv~~~--~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 523 (792)
|||+++... ++....++.+..++.. . -.++++|+++-..... . . ..... ..+ ......++..+.++.+
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~~-~--~-~~~~~--~~~-~~~~~~~~~~~~l~~~ 73 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASLS-L--H-RFAAD--VRR-FEEHLQHEAEERLQTM 73 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCccccc-c--c-ccccc--hhh-HHHHHHHHHHHHHHHH
Confidence 699999765 4677888888877643 2 3799999987542110 0 0 00000 000 0001112222223333
Q ss_pred hhcc-CcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 524 VDEN-GGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 524 ~~~~-~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
.+.. ..++.+++.+.. -+..++|++.|++.++|||+||-|++. .. ...++++-++|++++||+|-|
T Consensus 74 ~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~------~~llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 74 VSHFTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-IS------THLLGSNASSVIRHANLPVLV 140 (142)
T ss_pred HHHhCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-cc------ceecCccHHHHHHcCCCCEEE
Confidence 2211 234666655544 478899999999999999999998642 22 134677789999999999854
No 35
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=97.90 E-value=0.00016 Score=67.33 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=77.4
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCc
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGH 699 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~ 699 (792)
||++|.-|.++.+.++++|.+|++.++.+++++|+.+....... . ..+.+++..++.+++..+... ...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~-~~g 69 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP--------S--QLEVNVQRARKLLRQAERIAA-SLG 69 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc--------c--hhHHHHHHHHHHHHHHHHHhh-hcC
Confidence 58899999999999999999999999999999999865331100 0 011111223334444322211 111
Q ss_pred EEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269 700 VAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK 774 (792)
Q Consensus 700 v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 774 (792)
+.....+..++ +....|.++. .+.||+++|+++.. .| ...-+|-.-+-+... ++++||||+
T Consensus 70 ~~~~~~~~~~~-~~~~~I~~~a~~~~~dlIV~G~~~~~---------~~-~~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 70 VPVHTIIRIDH-DIASGILRTAKERQADLIIMGWHGST---------SL-RDRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred CceEEEEEecC-CHHHHHHHHHHhcCCCEEEEecCCCC---------Cc-cceecCchHHHHHhc---CCCCEEEeC
Confidence 22222222222 2334444443 35999999998742 12 234467777777754 678999984
No 36
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.89 E-value=0.00015 Score=69.08 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=78.3
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
|||+++...++....++.+..++.. ....++++|+.+-.....+.... . ...+ ...+..++..+.++.+.+
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~-~-----~~~~-~~~~~~~~~~~~l~~~~~ 75 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGLID-V-----NLGD-MQKRISEETHHALTELST 75 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhhhh-c-----chHH-HHHHHHHHHHHHHHHHHH
Confidence 6999998777777877777777643 23578999984311110000000 0 0000 001112233344445443
Q ss_pred ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
. .++.+....... .+.++.||+.|++.++|||++|-|++ + . ..++++-.+|+++|||+|-|
T Consensus 76 ~--~~~~~~~~~~~~--G~p~~~I~~~a~~~~~DLIV~Gs~~~----~-~----~~lgSva~~v~~~a~~pVLv 136 (144)
T PRK15118 76 N--AGYPITETLSGS--GDLGQVLVDAIKKYDMDLVVCGHHQD----F-W----SKLMSSARQLINTVHVDMLI 136 (144)
T ss_pred h--CCCCceEEEEEe--cCHHHHHHHHHHHhCCCEEEEeCccc----H-H----HHHHHHHHHHHhhCCCCEEE
Confidence 2 234443222223 57889999999999999999998832 1 1 12568889999999999754
No 37
>PRK15005 universal stress protein F; Provisional
Probab=97.88 E-value=0.00015 Score=68.98 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=77.7
Q ss_pred eEEEEecCCCC--hhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269 446 QILLCLHGSQN--ITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY 523 (792)
Q Consensus 446 rILvcv~~~~~--~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 523 (792)
+||+++...++ ....++.+..++.. ....++++|+++............. ......+....+..+++.+..+.+
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYS--AELPAMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCccccccccccc--ccchHHHHHHHHHHHHHHHHHHHh
Confidence 69999976665 35677776666643 3457999999985321111000000 000000000011112222223333
Q ss_pred hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 524 VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
. ..++.++....- -+..+.|++.|++.++|+|++|-|+. ... ...++++..+|++++||+|-|
T Consensus 80 ~---~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~------~~llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 80 K---LPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRP-DIT------TYLLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred C---CCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCC-Cch------heeecchHHHHHHhCCCCEEE
Confidence 2 223455544432 56789999999999999999997732 221 234677789999999999854
No 38
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.85 E-value=0.00022 Score=65.61 Aligned_cols=129 Identities=19% Similarity=0.275 Sum_probs=85.1
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
++|+|+.+.+....+++.+..++.. ....++++|+.+-.+.... + ..+ ......++.++.+.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~-----~------~~~-~~~~~~~~~l~~~~~~~~ 66 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAA-----E------LAE-LLEEEARALLEALREALA 66 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcch-----h------HHH-HHHHHHHHHHHHHHHHHh
Confidence 5899998888999999999998866 3578999999765443221 0 000 001122333333333322
Q ss_pred ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
..+++++...... . ..++|++.+++.++|++++|++++....+ ..+++.-+++++++||+|-+
T Consensus 67 --~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~dlvvig~~~~~~~~~------~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 67 --EAGVKVETVVLEG--D-PAEAILEAAEELGADLIVMGSRGRSGLRR------LLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred --cCCCceEEEEecC--C-CHHHHHHHHHHcCCCEEEEcCCCCCccce------eeeccHHHHHHhCCCCCEEe
Confidence 2347776665544 2 38999999999999999999986543211 23566678999999999743
No 39
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.68 E-value=0.026 Score=62.61 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=150.1
Q ss_pred CCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHH
Q 038269 52 HQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGC 131 (792)
Q Consensus 52 ~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~ 131 (792)
.+|+++--++.|+++.+.+..+ ++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+..=..+ .+..++|.
T Consensus 24 ~l~~~vl~~~~~~~lsnlgli~---~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~g~viG~ 99 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLGLID---SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AVGTVIGA 99 (378)
T ss_pred hcCHHHHHHHHHHHHHHCCCcC---CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HHHHHHHH
Confidence 4888898999999999877431 1244567777777777777777778999999999998875333333 23334454
Q ss_pred HHHHH-hhcc-cchhHHH-HHHHHHHHhh-ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 038269 132 SLTPF-LHYS-THRKIVV-AITLSFTLAG-SGSHILTRVITNLKIGKSDIGKLGMAAGIHSD-MITMLIICIGAVFVLPQ 206 (792)
Q Consensus 132 ~~~~~-l~~~-~~~~~~~-al~lg~~ls~-Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D-i~~~~ll~i~~~~~~~~ 206 (792)
.+++. ++.. ..+.|.. +.+.|.-..- ..+..+... ++. + .-..+.++.-| +..-+.+.+...+....
T Consensus 100 ~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~--~~~~~a~~aaDnv~~~~~~~~l~~l~~~~ 171 (378)
T PF05684_consen 100 VVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S--DSLFAAALAADNVVMALWFAFLLALPPFA 171 (378)
T ss_pred HHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHH---HCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44433 3221 1112211 1111111111 112222222 232 1 23444444444 44433333333332200
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh--------------hh--cCCCCcccchhHHHHHHHHHHHHHH
Q 038269 207 GNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWIN--------------NE--NPEGKAMKGTHLVLSLAFMVAVCSC 270 (792)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~--------------~~--~~~~~~~~e~~~~~il~~~l~~~~~ 270 (792)
+..-+|.. +. .++.++.. ..+...+.+.+..+.+
T Consensus 172 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~ 221 (378)
T PF05684_consen 172 -----------------------------RKFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVAL 221 (378)
T ss_pred -----------------------------HHhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHH
Confidence 00000000 00 00001111 1123333333333332
Q ss_pred ----hhhh-----Cch----hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHH
Q 038269 271 ----SPFY-----GYS----PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWG 337 (792)
Q Consensus 271 ----ae~~-----G~~----~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~ 337 (792)
++.+ +.+ .++-....|++..- +|..+.+ .--+.+ ..+++=+||..+|++.|+..+. + . .
T Consensus 222 s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~-~---a-p 293 (378)
T PF05684_consen 222 SHALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELL-D---A-P 293 (378)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHH-H---h-H
Confidence 2222 111 22333445555543 4544443 333444 6778888999999999987663 1 1 2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccCh
Q 038269 338 RFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITH 397 (792)
Q Consensus 338 ~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~ 397 (792)
..+++.++.+..-.+..+..++++|++..+...-+ .-|.-|..+......+++..+..+
T Consensus 294 ~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS-~AnIGGpaTA~a~A~a~~~~Lv~p 352 (378)
T PF05684_consen 294 SLFLFGFIILAIHLLLMLILGKLFKIDLFELLVAS-NANIGGPATAPAVAAAKGPSLVPP 352 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh-hcccCCcchHHHHHHhcCCccHHH
Confidence 23334455566788888889999999997765544 467777777666665555444433
No 40
>PRK09982 universal stress protein UspD; Provisional
Probab=97.68 E-value=0.00043 Score=65.98 Aligned_cols=132 Identities=8% Similarity=0.062 Sum_probs=76.6
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
+||+++...++....++-+..++.. .+.+++++|+++......+-. .. ....+ ......++..+.++.+.+
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~--~~----~~~~~-~~~~~~~~~~~~l~~~~~ 75 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPGI--YF----PATED-ILQLLKNKSDNKLYKLTK 75 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchhh--hc----cchHH-HHHHHHHHHHHHHHHHHH
Confidence 6999998888888888877777744 456899999987432111000 00 00000 000111222222333332
Q ss_pred ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
... ...++..+.. -+..+.||+.|++.++|||+||-| +... + +.+ .+-++|+++++|+|-|
T Consensus 76 ~~~-~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~-~------~~~-~va~~V~~~s~~pVLv 136 (142)
T PRK09982 76 NIQ-WPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFI-N------RLM-PAYRGMINKMSADLLI 136 (142)
T ss_pred hcC-CCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHH-H------HHH-HHHHHHHhcCCCCEEE
Confidence 211 1223332322 578999999999999999999954 2111 1 123 3788999999999754
No 41
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=97.67 E-value=0.00055 Score=63.61 Aligned_cols=132 Identities=19% Similarity=0.282 Sum_probs=77.7
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHH-----HHHHh
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFA-----EFYER 693 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~-----e~~~~ 693 (792)
+||++++-|+++.++|+++|.+++++.+.+++++++.+......... ....+.+...++.... +....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSA-------AEDEESEEEAEEEEQARQAEAEEAEA 75 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccccc-------ccccccccccchhhhhhhHHHHHHhh
Confidence 58999999999999999999999999999999999987543211000 0000000000000000 01011
Q ss_pred hcCCCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 694 QVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 694 ~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
......+......+..+.+....+ ..++|++|+|+++.. .|.+ --+|-+-+-++.. +.++||||
T Consensus 76 --~~~~~~~~~~~~~~~~~~i~~~~~-~~~~dliv~G~~~~~---------~~~~-~~~gs~~~~l~~~---~~~pVlvv 139 (140)
T PF00582_consen 76 --EGGIVIEVVIESGDVADAIIEFAE-EHNADLIVMGSRGRS---------GLER-LLFGSVAEKLLRH---APCPVLVV 139 (140)
T ss_dssp --HTTSEEEEEEEESSHHHHHHHHHH-HTTCSEEEEESSSTT---------STTT-SSSHHHHHHHHHH---TSSEEEEE
T ss_pred --hccceeEEEEEeeccchhhhhccc-cccceeEEEeccCCC---------CccC-CCcCCHHHHHHHc---CCCCEEEe
Confidence 122334444444444443333322 346999999998732 2222 2278888888874 66799987
No 42
>PRK11175 universal stress protein UspE; Provisional
Probab=97.66 E-value=0.00037 Score=75.40 Aligned_cols=144 Identities=14% Similarity=0.049 Sum_probs=83.0
Q ss_pred ceEEEEecCCCCh-------hhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHH
Q 038269 445 LQILLCLHGSQNI-------TSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEIT 517 (792)
Q Consensus 445 lrILvcv~~~~~~-------~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 517 (792)
-+||+++...+.. ...++.+..++... ....++++|+.+..........+. . ...+ ......++..
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~----~-~~~~-~~~~~~~~~~ 225 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPE----F-DPSV-YNDAIRGQHL 225 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccc----c-chhh-HHHHHHHHHH
Confidence 4799999644332 35677777766442 135789999987543211000000 0 0000 0011122233
Q ss_pred HHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCce
Q 038269 518 TAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSV 597 (792)
Q Consensus 518 ~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsV 597 (792)
+.++.+.+.. ++......... .+..+.|++.|+++++|+|+||.|.+....+ ..++++.++|++++||+|
T Consensus 226 ~~l~~~~~~~--~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~------~llGS~a~~v~~~~~~pV 295 (305)
T PRK11175 226 LAMKALRQKF--GIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSA------AFLGNTAEHVIDHLNCDL 295 (305)
T ss_pred HHHHHHHHHh--CCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcc------eeecchHHHHHhcCCCCE
Confidence 3444444322 23322222233 5678999999999999999999996654432 346777899999999998
Q ss_pred EEEecCCC
Q 038269 598 GILVDRGF 605 (792)
Q Consensus 598 gIlVdrg~ 605 (792)
-++-.+|+
T Consensus 296 Lvv~~~~~ 303 (305)
T PRK11175 296 LAIKPDGY 303 (305)
T ss_pred EEEcCCCC
Confidence 66545554
No 43
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=97.59 E-value=0.00081 Score=64.12 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=80.0
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCc
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGH 699 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~ 699 (792)
.|++++=|.+..+.|+++|.++++.++.+++++|+++........ ...........++.++.-++.++++.+.. ....
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 78 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSS-SGKLEVASAYKQEEDKEAKELLLPYRCFC-SRKG 78 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 378899999999999999999999999999999998643211000 00000000001111222345666664332 1223
Q ss_pred EEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccc-hhhhhhhcCCCCCc--eeEEEEe
Q 038269 700 VAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELG-PIGDVLSGSDFLVR--TSVLIIK 774 (792)
Q Consensus 700 v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG-~iGd~las~d~~~~--~SvLvvq 774 (792)
+.+...++. +.+..+.|.+.++ +.||+|+|+++.. |+.. . -+| -+-+.+.-. .+ ++|||||
T Consensus 79 ~~~~~~~~~-g~~~~~~I~~~a~~~~~dlIV~Gs~g~~------~l~~---~-~~gssva~~Vi~~---a~~~c~Vlvv~ 144 (146)
T cd01989 79 VQCEDVVLE-DDDVAKAIVEYVADHGITKLVMGASSDN------HFSM---K-FKKSDVASSVLKE---APDFCTVYVVS 144 (146)
T ss_pred CeEEEEEEe-CCcHHHHHHHHHHHcCCCEEEEeccCCC------ceee---c-ccCCchhHHHHhc---CCCCceEEEEe
Confidence 455544443 2223333434333 4799999997641 2221 1 245 577877764 44 7999998
Q ss_pred e
Q 038269 775 Q 775 (792)
Q Consensus 775 q 775 (792)
-
T Consensus 145 ~ 145 (146)
T cd01989 145 K 145 (146)
T ss_pred C
Confidence 3
No 44
>PRK10116 universal stress protein UspC; Provisional
Probab=97.56 E-value=0.0011 Score=62.76 Aligned_cols=133 Identities=9% Similarity=0.150 Sum_probs=80.1
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
+||+++...++....+..+..++... ...++++|.++...-... . ... ...+ ......++..+.++.+.+
T Consensus 5 ~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~-~-~~~-----~~~~-~~~~~~~~~~~~l~~~~~ 74 (142)
T PRK10116 5 NILVAVAVTPESQQLLAKAVSIARPV--NGKISLITLASDPEMYNQ-F-AAP-----MLED-LRSVMQEETQSFLDKLIQ 74 (142)
T ss_pred eEEEEccCCcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccchh-h-hHH-----HHHH-HHHHHHHHHHHHHHHHHH
Confidence 79999987777788888888777542 357888999865321000 0 000 0000 001112233344555444
Q ss_pred ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269 526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL 600 (792)
Q Consensus 526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl 600 (792)
. .++....... ...+..+.|++.|++.++||||+|=|++.... .+.++-.++++++||+|-|+
T Consensus 75 ~--~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~--------~~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 75 D--ADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFS--------RASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred h--cCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH--------HHHHHHHHHHhcCCCCEEEE
Confidence 2 2344332222 34788999999999999999999988553221 11245679999999998654
No 45
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.44 E-value=0.011 Score=62.48 Aligned_cols=258 Identities=11% Similarity=0.068 Sum_probs=141.1
Q ss_pred HHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccc----hhHHHHHHHHHHHhhccHHHHHHHH
Q 038269 92 MICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTH----RKIVVAITLSFTLAGSGSHILTRVI 167 (792)
Q Consensus 92 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~----~~~~~al~lg~~ls~Ts~~vv~~iL 167 (792)
+..++|-.|-++|++...+..||...+-+.-+++..+++.++..+++.... ......+.+-++++.+....=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 346788999999999999999998888888899999999999888864211 1112245566677777766677777
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcC
Q 038269 168 TNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENP 247 (792)
Q Consensus 168 ~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~ 247 (792)
.|++ -++|.|-.. ..-++|.=.+.+++ +..-+.
T Consensus 131 ~~yG-d~~D~gA~~--i~sl~~GPf~tMl~-----------------------------LG~sG~--------------- 163 (314)
T PF03812_consen 131 GQYG-DEEDVGAFS--ILSLNDGPFFTMLA-----------------------------LGASGL--------------- 163 (314)
T ss_pred HHhC-CHHHhHHHH--HHHhhhhHHHHHHH-----------------------------Hhhccc---------------
Confidence 7777 344443221 11122221111111 110000
Q ss_pred CCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccc
Q 038269 248 EGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFT 327 (792)
Q Consensus 248 ~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~ 327 (792)
.+..+... . +.+=+++.|+++.|- .+++.+.+.+- ..+++|+|-...|..+|+..
T Consensus 164 -----a~ip~~~l-v---------------~~llP~iiG~iLGNL---D~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~ 218 (314)
T PF03812_consen 164 -----ANIPWMSL-V---------------AALLPIIIGMILGNL---DPDFRKFLAPG-VPILIPFFGFALGAGINLSN 218 (314)
T ss_pred -----cCCCHHHH-H---------------HHHHHHHHHHHHhcC---CHHHHHHHhcC-CCeeeehhhhhhcCCCCHHH
Confidence 00000000 0 123377888888874 44556666653 78899999999999999876
Q ss_pred cccccchhHHHHHHHHHHHHhhhHHHHHHHHHh-hCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHH
Q 038269 328 FEADTLGTWGRFFFLIVISTAGKVVGTVICGLM-LGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIM 406 (792)
Q Consensus 328 l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~-~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~ 406 (792)
+...+ .-+.++.++ .++.--...++.-++ .|-+-.-+...+-.-+.--....+++..-.+.....+..-..+..+
T Consensus 219 i~~aG--l~GIlLgv~--~~~vtg~~~~~~dr~i~~~~g~aG~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaa 294 (314)
T PF03812_consen 219 IIKAG--LSGILLGVI--VVVVTGIPLYLADRLILKGNGVAGAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAA 294 (314)
T ss_pred HHHhC--cchHHHHHH--HHHHHhHHHHHHHHHHcCCCCceeehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHH
Confidence 53221 112111111 111112223444444 2333222222222111112223333333333333333444455677
Q ss_pred HHHHHhhhhHHHHHhhhhh
Q 038269 407 IFFTIVHTPFVVQNIIGRA 425 (792)
Q Consensus 407 ~vl~~~~~~~li~~l~~~~ 425 (792)
+++|++++|.+++|.+|+-
T Consensus 295 vIvTail~P~lt~~~~kr~ 313 (314)
T PF03812_consen 295 VIVTAILTPILTSWWAKRF 313 (314)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888999999999988753
No 46
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.41 E-value=0.11 Score=56.50 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hHcccCCChhHHHHHHHhhccCccc--cccccccccHHHHHHHHHHHHHHHHHHHhhcc
Q 038269 27 GSGKIVGLLLAYVLTNLAHH-LLKPMHQPRITSDIVIGLFLGNIQP--IRNGFELEMIQTLNYIVEFGMICYMFVLGLEM 103 (792)
Q Consensus 27 lp~~l~~i~lil~~~~~~~~-l~~rl~~P~iv~~IlaGillGp~~~--~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~ 103 (792)
+|-+.+...+.++...+... ..++.+++.++--++.|+++|+... ....+.+...-.-+.+-.+|+++ .|.++
T Consensus 4 ~pG~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l 79 (335)
T TIGR00698 4 SRGLLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRL 79 (335)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccc
Confidence 45555554444433333332 1355789999999999999998431 11111101112334666777664 69999
Q ss_pred ChhhhhcCCcccchHhHHHHHHHHHHHHHHH-HHhhcc
Q 038269 104 DPYVIFKPPTRDAIVAYGGMLSTFILGCSLT-PFLHYS 140 (792)
Q Consensus 104 d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~-~~l~~~ 140 (792)
+++++.+.+.+.+.+....+..++.++..+. ..++.+
T Consensus 80 ~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~ 117 (335)
T TIGR00698 80 TFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLKLD 117 (335)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999888777777777777766666 466643
No 47
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.36 E-value=0.076 Score=56.79 Aligned_cols=149 Identities=9% Similarity=0.075 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhhhcCCc---ccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhh-
Q 038269 82 QTLNYIVEFGMICYMFVLGLEMDPYVIFKPPT---RDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAG- 157 (792)
Q Consensus 82 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~---~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~- 157 (792)
..++..-.+.+.++||..|+.+..+++++..| ........++++--.+++++...+..++ .+..|..+-.
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~------~l~~Gl~ll~~ 107 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPP------ELAVGLLLLGC 107 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCH------HHHHhHHheee
Confidence 34444557888899999999999999986544 4444444555554445666666664322 2334444432
Q ss_pred ----ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038269 158 ----SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAK 233 (792)
Q Consensus 158 ----Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 233 (792)
|+. .+...+.. .+ --++++.+.++.+++.++.-+...+..++.. ... .+..++.++..++.=++.+.
T Consensus 108 ~Pggv~S-~~~t~lAk-----Gn-ValsV~~tsvStll~~f~tPllv~l~~~~~v-~~~-~~~m~~~i~~~vllP~~LG~ 178 (319)
T COG0385 108 CPGGVAS-NAMTYLAK-----GN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGV-PVD-VGGMFLSILLQVLLPFVLGQ 178 (319)
T ss_pred CCCchhH-HHHHHHhc-----Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCc-hHHHHHHHHHHHHHHHHHHH
Confidence 332 33333332 22 2466667778888888776555444433211 101 12344444433333344555
Q ss_pred HhHHHHHHHhhh
Q 038269 234 VSPVFMNWINNE 245 (792)
Q Consensus 234 v~r~~~~~i~~~ 245 (792)
+.|+......++
T Consensus 179 ~~r~~~~~~~~~ 190 (319)
T COG0385 179 LLRPLLPKWVER 190 (319)
T ss_pred HHHHHHHHHHHH
Confidence 666665544443
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.22 E-value=0.0056 Score=56.03 Aligned_cols=128 Identities=19% Similarity=0.230 Sum_probs=75.4
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCc
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGH 699 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~ 699 (792)
+|++++-+++..+.++.+|.+|++..+.++|++++.+..+... . ..++.+....++.++++.... ....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~---------~-~~~~~~~~~~~~~l~~~~~~~-~~~~ 69 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA---------A-ELAELLEEEARALLEALREAL-AEAG 69 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc---------h-hHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence 5788888899999999999999999999999999976433110 0 001112223456777775532 1122
Q ss_pred EEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 700 VAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 700 v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
+.+....+. +.. ...|.+. ..++|++|+|.++.. .|.+ --.|.+.+-|... ++..||+|
T Consensus 70 ~~~~~~~~~-~~~-~~~i~~~~~~~~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 70 VKVETVVLE-GDP-AEAILEAAEELGADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CceEEEEec-CCC-HHHHHHHHHHcCCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence 333333322 222 2333332 234899999997642 2222 2357777777754 55566654
No 49
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.19 E-value=0.0026 Score=58.76 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=72.3
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCc
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGH 699 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~ 699 (792)
||++++-|.+..++|+++|.+++++.+.+++++++.+..... ..++ .++.++++++... ...
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~------------~~~~-----~~~~l~~~~~~~~-~~~ 62 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR------------LSEA-----ERRRLAEALRLAE-ELG 62 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc------------CCHH-----HHHHHHHHHHHHH-HcC
Confidence 588999999999999999999999999999999998643210 0011 1233333332211 112
Q ss_pred EEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 700 VAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 700 v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
+.+. .+.+ .+..+.|.+. ..+.|++++|.++.. .|... -+|-..+-+.-.- .+..|||+
T Consensus 63 ~~~~--~~~~-~~~~~~I~~~~~~~~~dllviG~~~~~---------~~~~~-~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 63 AEVV--TLPG-DDVAEAIVEFAREHNVTQIVVGKSRRS---------RWREL-FRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred CEEE--EEeC-CcHHHHHHHHHHHcCCCEEEeCCCCCc---------hHHHH-hcccHHHHHHHhC--CCCeEEEe
Confidence 3332 2222 2233444444 335899999998641 22221 3677777776541 36788876
No 50
>PRK15005 universal stress protein F; Provisional
Probab=97.17 E-value=0.0072 Score=57.29 Aligned_cols=137 Identities=9% Similarity=0.095 Sum_probs=76.9
Q ss_pred eeEEEEeccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269 619 LNVAVIFIGGKD--DREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA 696 (792)
Q Consensus 619 ~~v~v~f~GG~d--dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~ 696 (792)
++|+++.=|.++ .+.|+++|.++++..+.+++++|+++........ .........+.+..++.-++.++++.++..
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 80 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASL-GLAYSAELPAMDDLKAEAKSQLEEIIKKFK- 80 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccc-cccccccchHHHHHHHHHHHHHHHHHHHhC-
Confidence 578899888776 4799999999999999999999998642211000 000000000011112222344555544322
Q ss_pred CCcEEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 697 EGHVAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 697 ~~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
...+.+... +..|. ....|.+. +.++||+|+|++++ |+.+| =+|-+.+-+... ++++||||
T Consensus 81 ~~~~~~~~~-v~~G~-p~~~I~~~a~~~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~~---a~cpVlvV 143 (144)
T PRK15005 81 LPTDRVHVH-VEEGS-PKDRILELAKKIPADMIIIASHRP-------DITTY----LLGSNAAAVVRH---AECSVLVV 143 (144)
T ss_pred CCCCceEEE-EeCCC-HHHHHHHHHHHcCCCEEEEeCCCC-------Cchhe----eecchHHHHHHh---CCCCEEEe
Confidence 222333333 33443 23334444 33699999997631 23222 257777777765 67899997
No 51
>PRK10116 universal stress protein UspC; Provisional
Probab=97.16 E-value=0.003 Score=59.88 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=73.1
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCC
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEG 698 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~ 698 (792)
++|+++.=+..+.+.||++|.++|+..+.+++++++++....... ..... .....+..++.-++.+++...+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~~~---- 76 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQ--FAAPM-LEDLRSVMQEETQSFLDKLIQDA---- 76 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchh--hhHHH-HHHHHHHHHHHHHHHHHHHHHhc----
Confidence 589999999999999999999999999999999999754221000 00000 00000111111123444443221
Q ss_pred cEEEEEEecCChHHHHHHHHhh-hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269 699 HVAYAEKHLANSSETFATLRSL-EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK 774 (792)
Q Consensus 699 ~v~y~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 774 (792)
.+...+.++..|......++.. ..++||+|+|.++.. +++.| +.+.+-++. .++++||||-
T Consensus 77 ~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~---~~~~pVLvv~ 138 (142)
T PRK10116 77 DYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFSRA------SCSAKRVIA---SSEVDVLLVP 138 (142)
T ss_pred CCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHHHH------HHHHHHHHh---cCCCCEEEEe
Confidence 2222233344443333333333 336999999998641 22222 223444444 3678999984
No 52
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.98 E-value=0.047 Score=57.36 Aligned_cols=257 Identities=9% Similarity=0.077 Sum_probs=133.9
Q ss_pred HHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhccc---c-hhHHHHHHHHHHHhhccHHHHHHHHH
Q 038269 93 ICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYST---H-RKIVVAITLSFTLAGSGSHILTRVIT 168 (792)
Q Consensus 93 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~---~-~~~~~al~lg~~ls~Ts~~vv~~iL~ 168 (792)
..++|-.|-++|++...+..||...+-..-+++..+++.++..+++... . ...-..+.+-++++.|.-..=..+..
T Consensus 52 ~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~ 131 (314)
T TIGR00793 52 AVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQ 131 (314)
T ss_pred HHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHH
Confidence 3678899999999999888888887777888889999999888887421 0 00112344445566565555556666
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCC
Q 038269 169 NLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPE 248 (792)
Q Consensus 169 el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~ 248 (792)
|++ -++|.|-..+.+ ++|.=-+. .+++..-+
T Consensus 132 qyG-d~~D~gA~~i~s--l~~GPf~T-----------------------------Mi~LG~sG----------------- 162 (314)
T TIGR00793 132 QYG-TKEEAGAFVLMS--LESGPLMT-----------------------------MVILGTAG----------------- 162 (314)
T ss_pred HcC-CHhhhhhhhhhh--hccCcHHH-----------------------------HHHHhhcc-----------------
Confidence 776 344444221111 11111111 11111000
Q ss_pred CCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhccccccccc
Q 038269 249 GKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTF 328 (792)
Q Consensus 249 ~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l 328 (792)
..+..+... . +.+=+++.|+++.|- .+++.+.+.+- ...++|+|-...|..+|++.+
T Consensus 163 ---lA~ip~~~l-v---------------~~ilPlliG~ilGNL---D~~~r~fl~~~-~~~lIpFf~FaLGaginl~~i 219 (314)
T TIGR00793 163 ---IASFEPHVF-V---------------GAVLPFLVGFALGNL---DPELRDFFSKA-VQTLIPFFAFALGNTIDLGVI 219 (314)
T ss_pred ---CCCCCHHHH-H---------------HHHHHHHHHHHHhcC---CHHHHHHhccC-CCeeeehhhhhhcCCCCHHHH
Confidence 000001110 0 233377888888874 44556666653 678999999999999998655
Q ss_pred ccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh-CCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHH
Q 038269 329 EADTLGTWGRFFFLIVISTAGKVVGTVICGLML-GFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMI 407 (792)
Q Consensus 329 ~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~-~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~ 407 (792)
...+ ..+.++.+. + .+.--...++.-|+. |-+..-....+-.-+.--....+++..-.+....-+..-..+-.++
T Consensus 220 ~~aG--l~GIlLGl~-v-~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaav 295 (314)
T TIGR00793 220 IQTG--LLGILLGVS-V-IILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSV 295 (314)
T ss_pred HHhC--cchHHHHHH-H-HHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHH
Confidence 2111 112111111 1 111223334444554 2222223333222111112223333332333323233333344567
Q ss_pred HHHHhhhhHHHHHhhhhh
Q 038269 408 FFTIVHTPFVVQNIIGRA 425 (792)
Q Consensus 408 vl~~~~~~~li~~l~~~~ 425 (792)
++|.+++|.++.|.+|+.
T Consensus 296 ivTaiL~Pilta~~~kr~ 313 (314)
T TIGR00793 296 IVTSLLVPIATVWWSKKV 313 (314)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 788888999999988753
No 53
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=96.97 E-value=0.004 Score=59.19 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=73.0
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcch-hhhhhhhhHHHHHHHHHhhcCC
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAE-LEEEMKIDDECFAEFYERQVAE 697 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~e~~~~~~~~ 697 (792)
.+|+++.=|.+..+.||++|..+++..+.+++++++.......... .. .....+ .+..++.-.+.++++.+..
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~~~--- 77 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTG-LI--DVNLGDMQKRISEETHHALTELSTNA--- 77 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhh-hh--hcchHHHHHHHHHHHHHHHHHHHHhC---
Confidence 5899999999999999999999999999999999984221100000 00 000000 0011111123344442211
Q ss_pred CcEEEEEEecCChHHHHHHHHhh-hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEee
Q 038269 698 GHVAYAEKHLANSSETFATLRSL-EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQ 775 (792)
Q Consensus 698 ~~v~y~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq 775 (792)
.+.+.+..+..|.-....++.. +.+.||+|+|++++ + |. .+|-+-+-+... ++++||||..
T Consensus 78 -~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~---~~---~lgSva~~v~~~---a~~pVLvv~~ 139 (144)
T PRK15118 78 -GYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQD-------F---WS---KLMSSARQLINT---VHVDMLIVPL 139 (144)
T ss_pred -CCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCccc-------H---HH---HHHHHHHHHHhh---CCCCEEEecC
Confidence 2223333443343222222322 34699999999842 1 11 145455555543 6789999975
No 54
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.83 E-value=0.11 Score=55.93 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=63.0
Q ss_pred cccCCChhHHHHHHHhhccC-ccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHH
Q 038269 49 KPMHQPRITSDIVIGLFLGN-IQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTF 127 (792)
Q Consensus 49 ~rl~~P~iv~~IlaGillGp-~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~ 127 (792)
....++.++--++.|+++|+ .......+.+.....-+.+-.+|.++ .|.++++.++.+.+.+.+.+....+..++
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~ 97 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTF 97 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHH
Confidence 34678999999999999998 33221122111112234666777664 68999999999999988888888888888
Q ss_pred HHHHHHH-HHhhcc
Q 038269 128 ILGCSLT-PFLHYS 140 (792)
Q Consensus 128 ~~~~~~~-~~l~~~ 140 (792)
.+++.++ ..++.+
T Consensus 98 ~~~~~lg~r~~~l~ 111 (305)
T PF03601_consen 98 LLTYWLGRRLFGLD 111 (305)
T ss_pred HHHHHHHHHHhCCC
Confidence 8888777 777654
No 55
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.82 E-value=0.84 Score=49.54 Aligned_cols=114 Identities=14% Similarity=0.272 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhhccChhhhhcCC---cccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhc-cH
Q 038269 85 NYIVEFGMICYMFVLGLEMDPYVIFKPP---TRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGS-GS 160 (792)
Q Consensus 85 ~~l~~lgl~~llF~~Gle~d~~~l~~~~---~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~T-s~ 160 (792)
+.....++..++|..|+.++.+++++.. |.....-...+++.-++++++...............+.+-.++.+| +.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S 109 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSS 109 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhH
Confidence 3566677778889999999999998644 4333333333444333455555555321111122233333333332 22
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038269 161 HILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVL 204 (792)
Q Consensus 161 ~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~ 204 (792)
.++ ++..- +.+ -..++..+.++.++++++.-+...+..
T Consensus 110 ~v~---~T~~A--gGN-~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 110 SVV---LTRLA--GGN-VALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHH---HHHHc--CCC-HHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 222 22222 222 246666777888888777655544443
No 56
>PRK15456 universal stress protein UspG; Provisional
Probab=96.69 E-value=0.037 Score=52.47 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=77.8
Q ss_pred eeEEEEeccCc--ChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269 619 LNVAVIFIGGK--DDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA 696 (792)
Q Consensus 619 ~~v~v~f~GG~--ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~ 696 (792)
++|++|.=|.. ..+.|+++|.++++.. .+++++|+++........... ......++..++.-++.++++.++..
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~- 78 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFA--ADVRRFEEHLQHEAEERLQTMVSHFT- 78 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccc--cchhhHHHHHHHHHHHHHHHHHHHhC-
Confidence 58999998874 7899999999999875 589999998643211000000 00000111222333455666644321
Q ss_pred CCcEEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269 697 EGHVAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK 774 (792)
Q Consensus 697 ~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 774 (792)
.....+. ..+..| +..+.|.+.+ .+.||+|+|.+++ + +.+ .=+|-..+-++.. ++++||||.
T Consensus 79 ~~~~~v~-~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~--~-----~~~----~llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 79 IDPSRIK-QHVRFG-SVRDEVNELAEELGADVVVIGSRNP--S-----IST----HLLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred CCCcceE-EEEcCC-ChHHHHHHHHhhcCCCEEEEcCCCC--C-----ccc----eecCccHHHHHHc---CCCCEEEeC
Confidence 1223332 333334 2333344433 3699999999753 2 112 2278888888875 778999983
No 57
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.69 E-value=1.3 Score=48.11 Aligned_cols=329 Identities=13% Similarity=0.108 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCCCh--hHH-HHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChh
Q 038269 30 KIVGLLLAYVLTNLAHHLLKPMHQPR--ITS-DIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPY 106 (792)
Q Consensus 30 ~l~~i~lil~~~~~~~~l~~rl~~P~--iv~-~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 106 (792)
...|.++.++++.+.++++..+++|. ..| -+++|++.+-.+.. +. .. ..+...|.+.+=-.+|..+..+
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~--l~---~P---~~l~~~~q~ilG~~ig~~~t~s 78 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT--LP---LP---RGLFKAGQVILGIMIGASLTPS 78 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc--cc---CC---hHHHHHHHHHHHHHHhhhcCHH
Confidence 35677778888889999999988875 455 56667766632211 11 11 3344455555556788888877
Q ss_pred hhh---cCCcccchHhHHHHHHHHHHHHHHHHHhh-cccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHH
Q 038269 107 VIF---KPPTRDAIVAYGGMLSTFILGCSLTPFLH-YSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGM 182 (792)
Q Consensus 107 ~l~---~~~~~~~~ia~~~~l~p~~~~~~~~~~l~-~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l 182 (792)
.+. +++-....+.+ ++...+...++++. ++. .+...+++ | .++-.......+-+|.| .|.+.-.+..
T Consensus 79 ~l~~l~~~w~~~~~v~~----~tl~~s~l~g~ll~r~~~-~~~~Ta~~-g--s~PGgas~m~~iA~d~g-Ad~~~VAl~Q 149 (352)
T COG3180 79 VLDTLKSNWPIVLVVLL----LTLLSSILLGWLLKRFSI-LPGNTAFL-G--SSPGGASAMVSIAQDYG-ADLRLVALMQ 149 (352)
T ss_pred HHHHHHHcccHHHHHHH----HHHHHHHHHHHHHHHhcC-CCcchhhH-h--cCCchHHHHHHHHHHhC-CChhHHHHHH
Confidence 664 44443333333 34444444444442 121 11111221 2 22222222333335655 2333211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCC------Ccccchh
Q 038269 183 AAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEG------KAMKGTH 256 (792)
Q Consensus 183 ~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~------~~~~e~~ 256 (792)
.++.+. ++....++.+.... .++..++ .++....
T Consensus 150 ----------------------------------~lRvl~----Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~ 189 (352)
T COG3180 150 ----------------------------------YLRVLF----VVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLI 189 (352)
T ss_pred ----------------------------------HHHHHH----HHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHH
Confidence 111111 11111111111110 0111000 0111111
Q ss_pred HHHHHHHHHHHHHHhhhhCch--hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccch
Q 038269 257 LVLSLAFMVAVCSCSPFYGYS--PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLG 334 (792)
Q Consensus 257 ~~~il~~~l~~~~~ae~~G~~--~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~ 334 (792)
+.+.+...+..+.+...+++. ..+|+++.|..+.-......++-+-+. .+-.-+.-..+|.++|-..+.. ...
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~-~~r 264 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILRE-AKR 264 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHH-hHh
Confidence 334444445555556666653 467777777777653311111111111 2222334567788888544321 112
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhh
Q 038269 335 TWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHT 414 (792)
Q Consensus 335 ~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~ 414 (792)
.....++.++..++.-....++.+++.+.++.++.. ..+|-|.-+++....+.+... +-+-+.=++=.++-..+.
T Consensus 265 ~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ad~--a~V~a~q~lRll~il~i~ 339 (352)
T COG3180 265 LLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGADP--AFVMALQVLRLLFILLLG 339 (352)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHH
Confidence 222334444555555666677778889999988754 357989888887766655221 111111122223333445
Q ss_pred hHHHHHhhhhh
Q 038269 415 PFVVQNIIGRA 425 (792)
Q Consensus 415 ~~li~~l~~~~ 425 (792)
|++.|++.++.
T Consensus 340 p~l~r~l~~~~ 350 (352)
T COG3180 340 PALARFLSKRA 350 (352)
T ss_pred HHHHHHHHHHc
Confidence 88888765543
No 58
>PRK09982 universal stress protein UspD; Provisional
Probab=96.67 E-value=0.019 Score=54.52 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=36.4
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeec
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLD 657 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~ 657 (792)
++|+++.=|+++.+.|+++|.+||+.++++++++++++.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~ 42 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDG 42 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccC
Confidence 589999999999999999999999999999999999754
No 59
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.78 Score=49.19 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=70.6
Q ss_pred hHHHHHHHhhccCcccc-ccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHh---HHHHHH-HHHHH
Q 038269 56 ITSDIVIGLFLGNIQPI-RNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVA---YGGMLS-TFILG 130 (792)
Q Consensus 56 iv~~IlaGillGp~~~~-~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia---~~~~l~-p~~~~ 130 (792)
+.-.+++|+.+|..... ......-+....+.--.+|+++.|+=.=+++|.+++++..|+.-.+. ....++ |+..-
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~ 99 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMF 99 (342)
T ss_pred HHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 44556778888853211 01111113344555667888888888888999999986655432222 222222 55433
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038269 131 CSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVF 202 (792)
Q Consensus 131 ~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~ 202 (792)
.....+++ ..+ ....|.++-.-+ |..+-++.=-++.+.+ -..++..-.+||++.+++++....+
T Consensus 100 ~la~~fl~--~~p----ey~~GlILlglA-pC~aMVivw~~La~Gd-~~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 100 ALAWFFLP--DEP----EYRAGLILLGLA-PCIAMVIVWSGLAKGD-RELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHhC--CCH----HHHHHHHHHHhh-hhHHHHHHHHhhccCc-HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 111 133333333322 2222222212333333 2455666679999999888665443
No 60
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.32 E-value=0.54 Score=51.32 Aligned_cols=118 Identities=9% Similarity=0.071 Sum_probs=69.4
Q ss_pred HHHhhhhC-----chhhHHHHHHhhhcCCCCcc--hHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHH
Q 038269 268 CSCSPFYG-----YSPILSAFMAGIFFPSEGRM--SKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFF 340 (792)
Q Consensus 268 ~~~ae~~G-----~~~~lgafvaGl~l~~~~~~--~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~ 340 (792)
.++.+.++ +....++++.|+++.+.-+. ..++.++..+.+.++-+.+|....=|++.+..+.. -....++
T Consensus 235 ~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~---l~lpl~v 311 (404)
T COG0786 235 KIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD---LALPLLV 311 (404)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---ccccHHH
Confidence 44555555 56678999999998874221 11233344444567777777777667777654421 1222333
Q ss_pred HHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhh-hhHHHHHHHHH
Q 038269 341 FLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSA-KGHFYIFLAIM 388 (792)
Q Consensus 341 ~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~-kG~v~l~l~~~ 388 (792)
++.+-..+.-+.+.++..|..|-++..+...+.-++. -|...-++++.
T Consensus 312 iL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 312 ILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 3333444445666777788889888777665443433 25566666664
No 61
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.29 E-value=2.1 Score=46.07 Aligned_cols=90 Identities=17% Similarity=0.253 Sum_probs=64.6
Q ss_pred hHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHH
Q 038269 47 LLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLST 126 (792)
Q Consensus 47 l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p 126 (792)
.....++|..+--|+.|+++|.....+.-+...-.-.-..+-++|+++ .|.++++.++...+.+.+.+-...+..+
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t 106 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSST 106 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHH
Confidence 344577999999999999999543221111112222344556677664 5899999999999999888888888888
Q ss_pred HHHHHHHHHHhhcc
Q 038269 127 FILGCSLTPFLHYS 140 (792)
Q Consensus 127 ~~~~~~~~~~l~~~ 140 (792)
+++++.++.+++.+
T Consensus 107 ~~~~~~lg~~lgld 120 (334)
T COG2855 107 FLFAYFLGKLLGLD 120 (334)
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888877754
No 62
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.18 E-value=0.11 Score=61.86 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchh
Q 038269 257 LVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGT 335 (792)
Q Consensus 257 ~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~ 335 (792)
+.+.++.+.++..++..+|+++++|=.++|+++.... ..-.. .+.++.+ .++-..++...+|+++|++.+.. .
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~----~ 83 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWK----L 83 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHH----H
Confidence 3445555566677888899999999999999885311 11111 2334544 56777778888999999876631 2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhh
Q 038269 336 WGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAK 378 (792)
Q Consensus 336 ~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~k 378 (792)
...++.+-...++.-++..+..+++.|.+|..++.+|..+..-
T Consensus 84 ~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S 126 (621)
T PRK03562 84 RRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS 126 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2222222222222223334455677899999999998877544
No 63
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.15 E-value=0.73 Score=51.18 Aligned_cols=284 Identities=12% Similarity=0.110 Sum_probs=139.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHH----h--hccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 038269 75 GFELEMIQTLNYIVEFGMICYMFVL----G--LEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVA 148 (792)
Q Consensus 75 lf~~~~~~~l~~l~~lgl~~llF~~----G--le~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~a 148 (792)
++|.+..+..+.+.+-+=.+.+|.+ | +.||.+.+.|...|.....+.+.+..++++.+++.+++++... ..
T Consensus 77 ~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~---~i 153 (414)
T PF03390_consen 77 LIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKD---AI 153 (414)
T ss_pred CCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HH
Confidence 5564444444444433222233333 2 5889999999888888777888888888888888888764322 11
Q ss_pred HHHHHHH-----hhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhh------H---
Q 038269 149 ITLSFTL-----AGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQ------I--- 214 (792)
Q Consensus 149 l~lg~~l-----s~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~------~--- 214 (792)
+.+..=. ..-+.|...-.-+-.+...++.-..++.+.++..+++++.-+++--+......++.+. .
T Consensus 154 ~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~ 233 (414)
T PF03390_consen 154 FYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEE 233 (414)
T ss_pred HHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCcccc
Confidence 1211111 0112222111111223333444445555666666666665554433322110000000 0
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHh
Q 038269 215 --------QSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAG 286 (792)
Q Consensus 215 --------~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaG 286 (792)
..-...+. .-++..+.+|....+. ...+++|...-..++-
T Consensus 234 ~~~~~~~~~~~~~~~g-~Gllla~~~y~~G~ll-------------------------------~~~i~ih~~a~mIi~~ 281 (414)
T PF03390_consen 234 EEAKKKEKPIDFSDMG-AGLLLACSFYILGVLL-------------------------------SKLIGIHAYAWMIILV 281 (414)
T ss_pred ccccccCCCCCHHHHH-HHHHHHHHHHHHHHHH-------------------------------HHhcCCcHHHHHHHHH
Confidence 00000000 1111112222222222 2333444333322222
Q ss_pred hhcCCC---CcchHHHHHHHhHHHHhhhhHHHHHhhccc-ccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhC
Q 038269 287 IFFPSE---GRMSKWTVGKVNYLLSTLYYPIFFFWMGFH-AKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLG 362 (792)
Q Consensus 287 l~l~~~---~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~-~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~ 362 (792)
.++.-. |+.-++=..+...|...-+.+-..+-+|+. +|++.+. ..-++.. +++++..+++-.++.++.+++.|
T Consensus 282 ~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~--~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g 358 (414)
T PF03390_consen 282 AIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLI--AAFTPQY-VVIVLATVLGAVIGAFLVGKLVG 358 (414)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHH--HHhCHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 222211 112222233555555566666677778888 8876553 1224443 34455566677888888999999
Q ss_pred CChHHH-HHHHHHhhhh-hHHHHHHHHHhhcccccC
Q 038269 363 FHWPES-VSLGLLLSAK-GHFYIFLAIMGAVHNYIT 396 (792)
Q Consensus 363 ~~~re~-~~lg~~l~~k-G~v~l~l~~~~~~~~~i~ 396 (792)
+-+-|+ +..|+.++.+ |.-++++.+.+...+++.
T Consensus 359 ~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 359 FYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred CChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 866555 5557566554 667777777766666554
No 64
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.11 E-value=0.63 Score=50.25 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=52.1
Q ss_pred HhhhhHHHHHhhccc-ccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHH-HHHHhhhh-hHHHHH
Q 038269 308 STLYYPIFFFWMGFH-AKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVS-LGLLLSAK-GHFYIF 384 (792)
Q Consensus 308 ~~~~~PlfF~~~Gl~-~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~-lg~~l~~k-G~v~l~ 384 (792)
..+.-|+.+ .+|.. +|+..+. +.-+|..++ +.+...++-..+.++.+|+.|+-+-|+.. -|+.|+.+ |.-+++
T Consensus 326 k~~t~~Lm~-giGv~ytdl~ev~--~alt~~~vi-i~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDva 401 (438)
T COG3493 326 KNLTWPLMA-GIGVAYTDLNEVA--AALTWQNVI-IALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVA 401 (438)
T ss_pred HhhHHHHHH-hhhhccccHHHHH--HHhchhHHH-HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchH
Confidence 444445444 45666 7775442 233454433 34455566777888899999986655544 45888766 566777
Q ss_pred HHHHhhcccccC
Q 038269 385 LAIMGAVHNYIT 396 (792)
Q Consensus 385 l~~~~~~~~~i~ 396 (792)
+.+.+-..++++
T Consensus 402 VLsAa~RM~Lmp 413 (438)
T COG3493 402 VLSAADRMELMP 413 (438)
T ss_pred Hhhhcchhcccc
Confidence 777666656554
No 65
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=96.09 E-value=1.8 Score=48.05 Aligned_cols=90 Identities=11% Similarity=0.190 Sum_probs=48.1
Q ss_pred CchhhHHHHHHhhhcCCCC------cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHH-HHHHH
Q 038269 275 GYSPILSAFMAGIFFPSEG------RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFL-IVIST 347 (792)
Q Consensus 275 G~~~~lgafvaGl~l~~~~------~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~l-i~~~~ 347 (792)
.++...+|++.|+++.+.. ...++..+++ .++.+-+|.+..=+.+++..+. +.+..++++ ++-.+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~----~~a~Plliil~~q~i 317 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLA----DYALPLLIILAVQTI 317 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHH----HHHHHHHHHHHHHHH
Confidence 3456789999999987632 1223334444 4444555544444556654442 233333333 33333
Q ss_pred hhhHHHHHHHHHhhCCChHHHHHHHH
Q 038269 348 AGKVVGTVICGLMLGFHWPESVSLGL 373 (792)
Q Consensus 348 ~~K~l~~~l~~~~~~~~~re~~~lg~ 373 (792)
+.=+...++..|..|-++ |+..+++
T Consensus 318 ~~~~f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 318 LMVLFAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHHHHHhhhhhCCCh-hHHHHhh
Confidence 334445566677888886 5555433
No 66
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.07 E-value=0.13 Score=48.74 Aligned_cols=142 Identities=20% Similarity=0.236 Sum_probs=79.0
Q ss_pred ceEEEEec-CCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269 445 LQILLCLH-GSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY 523 (792)
Q Consensus 445 lrILvcv~-~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 523 (792)
.++++... +.+........+....... ...+++++.++-.+.............. ...........++..+..+..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRL--GAPLILLVVIDPLEPTALVSVALADAPI-PLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhc--CCeEEEEEEecccccccccccccccchh-hhhHHHHHHHHHHHHHHHHHH
Confidence 36777776 6666666666666655443 3445677777655433221110000000 000001111234455555554
Q ss_pred hhccCcceE-EEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 524 VDENGGGIT-LKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 524 ~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
.+.. ++. ++....-. ..-.+.|+..|.+.++|+|++|-+++.+.++ -.++++-++|++++||+|-+
T Consensus 83 ~~~~--~~~~~~~~~~~g--~~~~~~i~~~a~~~~adliV~G~~g~~~l~~------~llGsvs~~v~~~~~~pVlv 149 (154)
T COG0589 83 AEAA--GVPVVETEVVEG--SPSAEEILELAEEEDADLIVVGSRGRSGLSR------LLLGSVAEKVLRHAPCPVLV 149 (154)
T ss_pred HHHc--CCCeeEEEEecC--CCcHHHHHHHHHHhCCCEEEECCCCCccccc------eeeehhHHHHHhcCCCCEEE
Confidence 4322 233 23333222 3336999999999999999999986655432 35778889999999999744
No 67
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.93 E-value=0.19 Score=53.42 Aligned_cols=141 Identities=17% Similarity=0.256 Sum_probs=84.3
Q ss_pred HHHHHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHH
Q 038269 264 MVAVCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFL 342 (792)
Q Consensus 264 ~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~l 342 (792)
....+.+++.++++.++|-.++|+++.... ..-+ -.+.++.+ ..+-..++....|+++|++.+.. .+.....+
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~-~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~----~~~~~~~~ 77 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS-NVEGVNHL-AEFGVILLMFLIGLELDLERLWK----LRKAAFGV 77 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC-ChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHH
Confidence 445577889999999999999999986421 1101 11234444 56667778888999999876642 22222332
Q ss_pred HHHHHhhh-HHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHh
Q 038269 343 IVISTAGK-VVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIV 412 (792)
Q Consensus 343 i~~~~~~K-~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~ 412 (792)
.+..++.- +...+..+++.+.++.+++.+|..+.+-. .-+++.+..|.+..+.+.-..++...+++-.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~ 146 (273)
T TIGR00932 78 GVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQDI 146 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHHHH
Confidence 33333333 33344456778999999999998877542 2333444455555554544444333333333
No 68
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=95.86 E-value=0.067 Score=58.78 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=36.9
Q ss_pred cceeEEEEeccCcChHHHHHHHHHHhcCC--CeEEEEEEeeec
Q 038269 617 ASLNVAVIFIGGKDDREALAYASRVARHP--AVKLTVIRFLLD 657 (792)
Q Consensus 617 ~~~~v~v~f~GG~ddreAL~~a~rma~~~--~v~ltv~r~~~~ 657 (792)
..+||++|+=|....+.|+++|..+|+.. +++++++++++.
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~ 46 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASG 46 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Confidence 34689999999999999999999999884 699999999864
No 69
>TIGR00930 2a30 K-Cl cotransporter.
Probab=95.82 E-value=7.8 Score=48.59 Aligned_cols=105 Identities=8% Similarity=0.086 Sum_probs=65.7
Q ss_pred CcceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269 443 NQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS 522 (792)
Q Consensus 443 ~elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 522 (792)
-.-++|+.+.+|++-+.+++|+..+.+.+ .-+.+-|+++-+.+... +..++..+..+.
T Consensus 574 wrPqiLvl~~~p~~~~~Ll~f~~~l~~~~---gl~i~~~v~~~~~~~~~-------------------~~~~~~~~~~~~ 631 (953)
T TIGR00930 574 WRPQCLVLTGPPVCRPALLDFASQFTKGK---GLMICGSVIQGPRLECV-------------------KEAQAAEAKIQT 631 (953)
T ss_pred cCCeEEEEeCCCcCcHHHHHHHHHhccCC---cEEEEEEEecCchhhhH-------------------HHHHHHHHHHHH
Confidence 34589999999999999999999998442 24556688774321110 000111112222
Q ss_pred hhhccCcceEEEEeEeecCCCChhHHHHHHHhh-----cCCcEEEecCCCCccCCC
Q 038269 523 YVDENGGGITLKRMLALSTFSGMPQDICILAED-----LMVSLIILPFHKRQLEDG 573 (792)
Q Consensus 523 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e-----~~~~liilp~h~~~~~~g 573 (792)
+-+. ..+.-=....++ +++.+++.++.+- -+++.++++|...|+.+.
T Consensus 632 ~~~~--~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~ 683 (953)
T TIGR00930 632 WLEK--NKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAE 683 (953)
T ss_pred HHHH--hCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhcc
Confidence 2111 112222224445 7899999999997 489999999998887543
No 70
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.76 E-value=0.62 Score=50.57 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=73.2
Q ss_pred HHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHh
Q 038269 281 SAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLM 360 (792)
Q Consensus 281 gafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~ 360 (792)
.+++.|..+.+ +.+.+.+.... .-.+++|++-...|.++|++.+...+ +.- +++.+..++......+...|+
T Consensus 178 lplliG~~lgn---l~~~l~~~~~~-Gi~~lLp~~~~~lG~~l~lq~i~~~G---~~G-ilL~~~~~~~t~~~~~~~~Rl 249 (326)
T PRK05274 178 LPLLVGFILGN---LDPELRQFLGK-AVPVLIPFFAFALGNGIDLGTIITAG---LSG-ILLGVAVVAVTGIPLYLADRL 249 (326)
T ss_pred HHHHHHHHHHh---HHHhhHHHhcC-CcEEEHHHHHHHHhcceeHhHHHhcC---Ccc-hhhhhhHhhccchhhHhHhhe
Confidence 67788888876 33334444443 35669999999999999987664222 211 222223333344444455577
Q ss_pred hCCChH---HHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhccc
Q 038269 361 LGFHWP---ESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKH 428 (792)
Q Consensus 361 ~~~~~r---e~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~ 428 (792)
++.... -+...+..-+.-|... ++......+-..++.-..+..++++++++.|.+..|++|+.+++
T Consensus 250 ~~~~~g~~g~a~~ttaG~aic~pAA--vaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~~~ 318 (326)
T PRK05274 250 IGGGNGVAGAAAGSTAGNAVATPAA--VAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVGKR 318 (326)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHH--HHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 743222 1222222111112222 22222222333444444455566688888999999888766554
No 71
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.74 E-value=2.3 Score=46.23 Aligned_cols=157 Identities=10% Similarity=-0.014 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhhhhCch--hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchh
Q 038269 258 VLSLAFMVAVCSCSPFYGYS--PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGT 335 (792)
Q Consensus 258 ~~il~~~l~~~~~ae~~G~~--~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~ 335 (792)
...+......+++.+.+++. .++|+++.+.++.-.....-.+-+.+. .+..-+.=..+|.+++...+.. -...
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~-~~~~ 232 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRE-LRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHH-HHHH
Confidence 34444555566777777764 567777776665542111111111122 2222234467788888654432 1334
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhh
Q 038269 336 WGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTP 415 (792)
Q Consensus 336 ~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~ 415 (792)
+...++..+..+..-.+..++.+++.++++.+++. .+.|-|.-|+.+.....+.+.---..+.+ +=.+...++.|
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~--~Rl~~v~~~~p 307 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQV--VRLLFVLLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHH
Confidence 44455556666666777788888999999988754 35799999998877665543211111111 12223334578
Q ss_pred HHHHHhhhh
Q 038269 416 FVVQNIIGR 424 (792)
Q Consensus 416 ~li~~l~~~ 424 (792)
++.|++.|+
T Consensus 308 ~~~r~~~r~ 316 (318)
T PF05145_consen 308 FIARWLRRR 316 (318)
T ss_pred HHHHHHHHh
Confidence 888876653
No 72
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.67 E-value=0.27 Score=58.39 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhH
Q 038269 258 VLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTW 336 (792)
Q Consensus 258 ~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~ 336 (792)
.+.++.+.++..++..+|+++++|=.++|+++.... ..-.. .+.++.+ ..+-..++...+|+++|++.+.. ..
T Consensus 11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~----~~ 84 (601)
T PRK03659 11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQ----LR 84 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHH----HH
Confidence 344445555566778889999999999999885421 11111 1334444 56666777778899999876531 11
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhh
Q 038269 337 GRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSA 377 (792)
Q Consensus 337 ~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~ 377 (792)
..++.+....++.-++.....+++.|++|..++.+|..+..
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111111112111222223345578999999888875543
No 73
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.55 E-value=0.33 Score=57.30 Aligned_cols=133 Identities=16% Similarity=0.107 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHH
Q 038269 259 LSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWG 337 (792)
Q Consensus 259 ~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~ 337 (792)
.+++.++++..++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|++.+... ..
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~----~~ 86 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV----KS 86 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH----hh
Confidence 33455566667778888888888889998885421 11111 1234443 566666777788999998765311 11
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhh
Q 038269 338 RFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT 399 (792)
Q Consensus 338 ~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~ 399 (792)
......+...+.=++..+..++..++++.+++.+|..++.-.. .+++....|.|.++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 87 IAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 1111111122222333344556778999999999987666222 34455555666655543
No 74
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.35 E-value=0.82 Score=49.70 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=75.3
Q ss_pred CchhhHHHHHHhhhcCCCCcchHHHHHHHhHH---HHhhhhHHHHHhhccc-ccccccccccchhHHHHHHHHHHHHhhh
Q 038269 275 GYSPILSAFMAGIFFPSEGRMSKWTVGKVNYL---LSTLYYPIFFFWMGFH-AKLFTFEADTLGTWGRFFFLIVISTAGK 350 (792)
Q Consensus 275 G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~---~~~~~~PlfF~~~Gl~-~d~~~l~~~~~~~~~~~~~li~~~~~~K 350 (792)
++|+..-..++|.++....-..+.++++...+ ...-+.+..++-+|+. +|++.+. +.-+|. .+++++...++=
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~--~a~t~~-~vviiv~~Vlg~ 279 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLV--AALSWQ-FVVICLSVVVAM 279 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHH--HHhchh-HhhhHHHHHHHH
Confidence 67888888888888877655556666665543 2333444445555766 6775542 111233 344566667777
Q ss_pred HHHHHHHHHhhCCChHHH-HHHHHHhhhh-hHHHHHHHHHhhcccccC
Q 038269 351 VVGTVICGLMLGFHWPES-VSLGLLLSAK-GHFYIFLAIMGAVHNYIT 396 (792)
Q Consensus 351 ~l~~~l~~~~~~~~~re~-~~lg~~l~~k-G~v~l~l~~~~~~~~~i~ 396 (792)
.++.++.+++.|+-+-|+ +..|+.++.+ |.-++++.+.+...+++.
T Consensus 280 ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 280 ILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 888889999999755555 5556566555 667777777666666554
No 75
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.16 E-value=4.4 Score=43.39 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhccChhhhhcCCcc--cchHhHH-HHH-HHHHHHHHHHHHhhc
Q 038269 87 IVEFGMICYMFVLGLEMDPYVIFKPPTR--DAIVAYG-GML-STFILGCSLTPFLHY 139 (792)
Q Consensus 87 l~~lgl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~l-~p~~~~~~~~~~l~~ 139 (792)
+.-..+.+.||..|+.++.+++++..|+ ....+.. .++ .|.+. +.+..+++.
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l 64 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKL 64 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCC
Confidence 3334478899999999999999876653 3333333 343 46544 555555543
No 76
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.08 E-value=0.34 Score=57.16 Aligned_cols=118 Identities=17% Similarity=0.235 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchH--HHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhH
Q 038269 259 LSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSK--WTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTW 336 (792)
Q Consensus 259 ~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~--~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~ 336 (792)
+++++..++..++..+|++.+++-.++|+++.....-.- .-.+-.+ ....+.+++.....|+++|++.+. ..+
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~-~i~~l~L~~iLF~~Gl~~~~~~l~----~~~ 87 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAY-LVGNLALAVILFDGGLRTRWSSFR----PAL 87 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHH-HHHHHHHHHHHHcCccCCCHHHHH----HHH
Confidence 334444455567777888888888888888875321100 0012233 347788899999999999987664 233
Q ss_pred HHHHHHHHHHHhhhHHH-HHHHHHhhCCChHHHHHHHHHhhhhhHH
Q 038269 337 GRFFFLIVISTAGKVVG-TVICGLMLGFHWPESVSLGLLLSAKGHF 381 (792)
Q Consensus 337 ~~~~~li~~~~~~K~l~-~~l~~~~~~~~~re~~~lg~~l~~kG~v 381 (792)
..+..+....++.-.+. .+...++.+++|.+++.+|..+++-...
T Consensus 88 ~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 88 GPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 33333333333333333 3445567899999999999887765443
No 77
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.01 E-value=6.8 Score=42.85 Aligned_cols=45 Identities=13% Similarity=-0.060 Sum_probs=30.2
Q ss_pred HHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhh-hHHHHHHHHHhh
Q 038269 346 STAGKVVGTVICGLMLGFHWPESVSLGLLLSAK-GHFYIFLAIMGA 390 (792)
Q Consensus 346 ~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~k-G~v~l~l~~~~~ 390 (792)
..+.-+...+..++..|.+.+|+..+.+--+.| +...+.++....
T Consensus 255 ~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f 300 (328)
T TIGR00832 255 YFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLF 300 (328)
T ss_pred HHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhC
Confidence 334445566677888999999998887766665 455555555433
No 78
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=94.98 E-value=0.64 Score=52.28 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCC-CC---cchHHHHHHHhHHHHhhhhHHHHHhhccccccccccccc
Q 038269 257 LVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPS-EG---RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADT 332 (792)
Q Consensus 257 ~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~-~~---~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~ 332 (792)
+..+++.+.....+.+.+|+++++|=.++|+++.. +. ...++..+-+. ++=.-++...+|+.+|++.+....
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~la----elGvi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLA----ELGVVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHH----HHhHHHHHHHHHHCcCHHHHHHhc
Confidence 44555666666789999999999999999999986 21 12233333333 333445566789999997764321
Q ss_pred chhHHHHHHHHHHHHhhhHHHH--HHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHH
Q 038269 333 LGTWGRFFFLIVISTAGKVVGT--VICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFT 410 (792)
Q Consensus 333 ~~~~~~~~~li~~~~~~K~l~~--~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~ 410 (792)
..+ ......+.+..=++.. +... .+++++.+++.+|..+..-.. -+.+.+..|.|....+.-..++...++.
T Consensus 87 -~~~--~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~~ 160 (397)
T COG0475 87 -RSV--GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVFD 160 (397)
T ss_pred -hhh--hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 121 1122222222222222 2222 589999999999987755322 1334445566666666665555555555
Q ss_pred HhhhhHHHHH
Q 038269 411 IVHTPFVVQN 420 (792)
Q Consensus 411 ~~~~~~li~~ 420 (792)
=+.+-++...
T Consensus 161 Di~~i~lLai 170 (397)
T COG0475 161 DIAAILLLAI 170 (397)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 79
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.88 E-value=0.53 Score=50.74 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhh----hhCchhhHHHHHHhhhcCC-CCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccc
Q 038269 259 LSLAFMVAVCSCSP----FYGYSPILSAFMAGIFFPS-EGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTL 333 (792)
Q Consensus 259 ~il~~~l~~~~~ae----~~G~~~~lgafvaGl~l~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~ 333 (792)
+.+++.....++++ ..++++.+=|.+.|+++.| .....+.+.+-++. ....++.+=-+..|.++++..+...+
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~-~~k~~Lr~gIVLlG~~l~~~~i~~~G- 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKF-SSKKLLRLGIVLLGFRLSFSDILALG- 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHH-HHHHHHHHHHHHHCccccHHHHHHhC-
Confidence 34444444555554 4677888889999999997 44445555555554 35678888889999999987664222
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHH-HhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhh--HHHHHHHHHHH
Q 038269 334 GTWGRFFFLIVISTAGKVVGTVICG-LMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT--AASLVIMIFFT 410 (792)
Q Consensus 334 ~~~~~~~~li~~~~~~K~l~~~l~~-~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~--~~~lv~~~vl~ 410 (792)
+..++. .++....-+..++..+ +.+|++++.+..++...+.=|.-+++...-..+.+- ++.. .+.+.+.-.+.
T Consensus 83 --~~~~~~-~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-~~~a~ava~V~lfg~va 158 (305)
T PF03601_consen 83 --WKGLLI-IIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-EDVAYAVATVFLFGTVA 158 (305)
T ss_pred --ccHHHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC-CceeeeehHHHHHHHHH
Confidence 212222 2233333344444445 999999999999998877777766666554444331 1111 22333334455
Q ss_pred HhhhhHHHHHhhhhhcccCccccccc
Q 038269 411 IVHTPFVVQNIIGRARKHAPTKRMAL 436 (792)
Q Consensus 411 ~~~~~~li~~l~~~~~~~~~~~~r~i 436 (792)
.++-|.+.+++.-....+--+---++
T Consensus 159 m~~~P~l~~~l~l~~~~~G~w~G~sI 184 (305)
T PF03601_consen 159 MFLYPLLGHALGLSPQQFGAWAGGSI 184 (305)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhhhhh
Confidence 56677777776555444433333333
No 80
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.81 E-value=0.27 Score=52.76 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=81.5
Q ss_pred HhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhh
Q 038269 270 CSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAG 349 (792)
Q Consensus 270 ~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~ 349 (792)
..+..|+++.+=|.+.|+++....+.+.+...-++. ....++.+=.++.|++++++++...+.. .+.+.+..+..
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~~G~~----~v~~~~~~l~~ 105 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIADVGGS----GVLIIAITLSS 105 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHHcCcc----HHHHHHHHHHH
Confidence 445566678888999999998655555555555554 3677888888999999998776422221 23344455556
Q ss_pred hHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhh
Q 038269 350 KVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGA 390 (792)
Q Consensus 350 K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~ 390 (792)
-++.++..++++|++++.+..+|..-+-=|.-+++...-..
T Consensus 106 t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi 146 (334)
T COG2855 106 TFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI 146 (334)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC
Confidence 67777888889999999999999877777776666555433
No 81
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=94.67 E-value=0.18 Score=50.46 Aligned_cols=127 Identities=13% Similarity=0.324 Sum_probs=80.9
Q ss_pred HHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccCh-----hhhhcCCcccchHhHHHHHHHHHHHH
Q 038269 57 TSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDP-----YVIFKPPTRDAIVAYGGMLSTFILGC 131 (792)
Q Consensus 57 v~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~l~p~~~~~ 131 (792)
++.+++|+++|..... + ....+...+..+.+++|.+|+++-- +.+|+.+++++.+.+..++-+++.+.
T Consensus 2 l~~li~Gi~lG~~~~~------~-~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~ 74 (191)
T PF03956_consen 2 LIALILGILLGYFLRP------P-FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGL 74 (191)
T ss_pred eeeHHHHHHHHHHhcc------c-ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3456788888864332 1 1222677888899999999999843 45677888999999888888888888
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 038269 132 SLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICI 198 (792)
Q Consensus 132 ~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i 198 (792)
+++.+++.+. ..++.++.-+.= +.....++.|++ +.+.|.++.=+=++-+++++++.-+
T Consensus 75 l~~~ll~~~~----~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~ 133 (191)
T PF03956_consen 75 LASLLLGLSL----KESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPL 133 (191)
T ss_pred HHHHHhcCCH----HHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887775432 223333332222 222333344443 4577877766666666666655443
No 82
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.38 E-value=0.88 Score=44.58 Aligned_cols=113 Identities=12% Similarity=0.183 Sum_probs=76.1
Q ss_pred cccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---hcCCcccchHhHHHHHH
Q 038269 49 KPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---FKPPTRDAIVAYGGMLS 125 (792)
Q Consensus 49 ~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~l~ 125 (792)
+++++-...+-+++|+++|...-....+ ......+.+.++|+.+|++.+|++--++.+ |+.+.+...+++.-.++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~ 96 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLV 96 (169)
T ss_pred cceeccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5566666779999999999653221122 234566788999999999999999887655 45666666777777777
Q ss_pred HHHHHHHHHH-HhhcccchhHHHHHHHHH-HHhhccHHHHHHHHHh
Q 038269 126 TFILGCSLTP-FLHYSTHRKIVVAITLSF-TLAGSGSHILTRVITN 169 (792)
Q Consensus 126 p~~~~~~~~~-~l~~~~~~~~~~al~lg~-~ls~Ts~~vv~~iL~e 169 (792)
|.++++.+.+ +++.+. ....|. +=+.|++|.+....+.
T Consensus 97 ~~~~~~~~~~~~~~l~~------~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 97 PLLIALVIGRYLFKLNP------GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHcCCCH------HHHHHHHHccccCcHHHHHHHHh
Confidence 8888887776 555432 223332 3345777777665554
No 83
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.03 E-value=13 Score=41.78 Aligned_cols=141 Identities=10% Similarity=0.166 Sum_probs=73.4
Q ss_pred hCchhhHHHHHHhhhcCCCCcch--HHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhH
Q 038269 274 YGYSPILSAFMAGIFFPSEGRMS--KWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKV 351 (792)
Q Consensus 274 ~G~~~~lgafvaGl~l~~~~~~~--~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~ 351 (792)
+.++...+|++.|+++.+.-+.. .++.++..+...++.+-+|.+..=+.+++..+. +.+..++++++..++.-.
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~----~~a~Plliil~~q~i~~~ 318 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELA----DLAGPIALILLVQVMFMA 318 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34677899999999988742211 112233333345666666666666777775552 345555555555544444
Q ss_pred -HHHHHHHHhhCCChHHHHHHHHHhhh--hhHHHHHHHHHh---hcccccChhhHHHH-HHHHHHHHhhhhHHHHH
Q 038269 352 -VGTVICGLMLGFHWPESVSLGLLLSA--KGHFYIFLAIMG---AVHNYITHTTAASL-VIMIFFTIVHTPFVVQN 420 (792)
Q Consensus 352 -l~~~l~~~~~~~~~re~~~lg~~l~~--kG~v~l~l~~~~---~~~~~i~~~~~~~l-v~~~vl~~~~~~~li~~ 420 (792)
...++.-|..|-+ .|+-.++....- -|...-++++.- .++|. +++.|-++ +....+.-++-++++..
T Consensus 319 l~~~fv~fr~mg~~-ydaaV~~ag~~G~~lGatptaianm~av~~~yg~-s~~af~ivPlvgaf~id~~n~~~i~~ 392 (398)
T TIGR00210 319 LYAIFVTFRLMGKD-YDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP-SHQAFIVVPLVGAFFIDIINALVIKQ 392 (398)
T ss_pred HHHHHHhHHhccch-HHHHHHhcccccccccchHHHHHHHHHHHhccCC-CCcceehhhhHHHHHHHHhhHHHHHH
Confidence 3345556667766 677664332222 244555555431 23343 55555443 33334434444444443
No 84
>PRK03818 putative transporter; Validated
Probab=93.75 E-value=1.1 Score=52.62 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhH-cccCCChhHHHHHHHhhccCcccccccccc-ccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269 31 IVGLLLAYVLTNLAHHLL-KPMHQPRITSDIVIGLFLGNIQPIRNGFEL-EMIQTLNYIVEFGMICYMFVLGLEMDPYVI 108 (792)
Q Consensus 31 l~~i~lil~~~~~~~~l~-~rl~~P~iv~~IlaGillGp~~~~~~lf~~-~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 108 (792)
++-+++.+.+..+++.+- +.+++- +.|-+++|+++|..... +.. -.......+.++|+.+|+|.+|++.-+..+
T Consensus 8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~---~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~ 83 (552)
T PRK03818 8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQ---FGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFF 83 (552)
T ss_pred HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccc---cCcccChHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 333344444444444321 223333 48889999999973211 111 134566778999999999999999988766
Q ss_pred ---hcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHHh
Q 038269 109 ---FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVITN 169 (792)
Q Consensus 109 ---~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~e 169 (792)
|+.+.+...+++.-.+++.++++++.++++.+. ....| .+=+.|++|.+......
T Consensus 84 ~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~G~~aGa~T~tp~l~aa~~~ 142 (552)
T PRK03818 84 SSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL------PVMLGIFSGAVTNTPALGAGQQI 142 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHhhccccccHHHHHHHHH
Confidence 455556666777777777888777777776532 12233 23345666666665543
No 85
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=93.71 E-value=1 Score=49.62 Aligned_cols=131 Identities=16% Similarity=0.167 Sum_probs=79.2
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV 524 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 524 (792)
.|||+++...++....++-+-.++...+...+++++|+++...... . . + ...+..+++++..+...
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~------~---~----~-~~~~~~eelle~~~~~~ 71 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP------E---G----Q-DELAAAEELLERVEVWA 71 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc------c---h----h-HHHHHHHHHHHHHHHHH
Confidence 3799999999988888888877774421246899999988422100 0 0 0 01112334444444433
Q ss_pred hc----cCcceEEEEeEeec-C----CCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCC
Q 038269 525 DE----NGGGITLKRMLALS-T----FSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATC 595 (792)
Q Consensus 525 ~~----~~~~v~v~~~t~vs-~----~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apC 595 (792)
+. ...++.+++..... . .-+.++.|++.|+|.++|+|+|+=..+. .|+ .+..|.+- .=|.++-|
T Consensus 72 ~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~--~~~----~~~~~~~~-~~~~~~~~ 144 (357)
T PRK12652 72 TEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP--GGT----APMLQPLE-RELARAGI 144 (357)
T ss_pred HHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC--CCC----CcccchHH-HHHHhcCC
Confidence 21 12468888666552 1 1588999999999999999999955332 222 23345444 33455555
Q ss_pred c
Q 038269 596 S 596 (792)
Q Consensus 596 s 596 (792)
+
T Consensus 145 ~ 145 (357)
T PRK12652 145 T 145 (357)
T ss_pred c
Confidence 5
No 86
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.66 E-value=1.3 Score=53.38 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=50.1
Q ss_pred HHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHh--hCCChHHHHHHHHHhhhhhHH
Q 038269 307 LSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLM--LGFHWPESVSLGLLLSAKGHF 381 (792)
Q Consensus 307 ~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~--~~~~~re~~~lg~~l~~kG~v 381 (792)
+..+.+++-....|++++...+. ..|..+..+++.+...-++.+.+.+++ .+++|..++.+|.++.+-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lr----r~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYML----KHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 36677788888899999987653 345555555555555555555555543 599999999999999987754
No 87
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.21 E-value=1.5 Score=54.20 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHH-HHHHHHHHHHHHhhccChhhhhcCCcccc--hHh
Q 038269 43 LAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYI-VEFGMICYMFVLGLEMDPYVIFKPPTRDA--IVA 119 (792)
Q Consensus 43 ~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l-~~lgl~~llF~~Gle~d~~~l~~~~~~~~--~ia 119 (792)
+..++.+.+|+..++|-.++|+++......+ .-.+-++.+ ..+-+-+|...+|+++|+..+.......+ .+.
T Consensus 283 ~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~-----~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~li 357 (832)
T PLN03159 283 ISGFITDAIGTHSVFGAFVFGLVIPNGPLGV-----TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVI 357 (832)
T ss_pred HHHHHHHHhCccHHHHHHHHhhccCCcchHH-----HHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHH
Confidence 3445556666666666666666665321110 112233333 33444566677899999988843211111 111
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHH--HHHHHHHhcCCCCCch
Q 038269 120 YGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSH--ILTRVITNLKIGKSDI 177 (792)
Q Consensus 120 ~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~--vv~~iL~el~ll~s~~ 177 (792)
+.+++.=++.+++.+++++++ +..++.+|..++.-... +++.+-.+.|.++.+.
T Consensus 358 v~a~~gK~~g~~l~a~~~g~~----~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~ 413 (832)
T PLN03159 358 IMASAGKIMGTIIIAFFYTMP----FREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDES 413 (832)
T ss_pred HHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchh
Confidence 111111122223334444433 34477888888774322 2444445566655443
No 88
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=92.61 E-value=2.8 Score=45.74 Aligned_cols=141 Identities=13% Similarity=-0.020 Sum_probs=81.0
Q ss_pred hCchhhHHHHHHhhhcCCCC--cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhH
Q 038269 274 YGYSPILSAFMAGIFFPSEG--RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKV 351 (792)
Q Consensus 274 ~G~~~~lgafvaGl~l~~~~--~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~ 351 (792)
.++++.+=|.+.|+++.+.. +..+....-++ +....++-+=-+..|+++++.++...+ + ..+.+.+.....-+
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~G---~-~~l~~~~~~v~~~~ 103 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADVG---P-NEIVADTLILTSTF 103 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHhh---H-HHHHHHHHHHHHHH
Confidence 46777888889999988732 22222222233 335566677778899999987663221 1 12222233333334
Q ss_pred HH-HHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhh---HHHHHHHHHHHHhhhhHHHHHh
Q 038269 352 VG-TVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT---AASLVIMIFFTIVHTPFVVQNI 421 (792)
Q Consensus 352 l~-~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~---~~~lv~~~vl~~~~~~~li~~l 421 (792)
.. .++..|.+|++++.+..++...+-=|.-+++...-..+.+ +++. -+.+++.-.+..++-|++.+++
T Consensus 104 ~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 104 FLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 44 4444588999999999998877776776666554443332 1221 2222333344455667766654
No 89
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=92.54 E-value=2.7 Score=41.91 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhccChhhhhcCCcccch--HhH-HHHHHHHHHHHHHH-HHhhcccchhHHHHHHHHHHHhhccHHHHHH
Q 038269 90 FGMICYMFVLGLEMDPYVIFKPPTRDAI--VAY-GGMLSTFILGCSLT-PFLHYSTHRKIVVAITLSFTLAGSGSHILTR 165 (792)
Q Consensus 90 lgl~~llF~~Gle~d~~~l~~~~~~~~~--ia~-~~~l~p~~~~~~~~-~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~ 165 (792)
+.+.+.||..|+++|++++++..|+... .++ ..+++.-.+++++. .++..+ .....++++. ..++.+ ..+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~--~~~~~Gl~l~-~~~P~~--~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS--PALALGLLLV-AACPGG--PASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----HHHHHHHHHH-HHS-B---THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH-hcCCcH--HHHH
Confidence 4567899999999999999977665432 222 33444333444554 444322 2222222222 222222 2334
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038269 166 VITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFV 203 (792)
Q Consensus 166 iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~ 203 (792)
....+. +.+. .++.+...++.+.+.+..-+...+.
T Consensus 77 ~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 77 VFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHH
Confidence 444432 2232 3566667777777776665554443
No 90
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=92.35 E-value=1.6 Score=48.57 Aligned_cols=118 Identities=13% Similarity=0.037 Sum_probs=64.9
Q ss_pred HhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHH-HHHHH
Q 038269 308 STLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHF-YIFLA 386 (792)
Q Consensus 308 ~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v-~l~l~ 386 (792)
.++++-.||..+|+..++..+.. .+........+.........+.....+.+++.++.-.+..|..--..|+= +.++.
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkk-gg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKK-GGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHH
Confidence 45677788999999998866542 22222222222333344565555566777888876665544211122332 23333
Q ss_pred HHhhcc-cccChhhHHHHH--HHHHHHHhhhhHHHHHhhhhhc
Q 038269 387 IMGAVH-NYITHTTAASLV--IMIFFTIVHTPFVVQNIIGRAR 426 (792)
Q Consensus 387 ~~~~~~-~~i~~~~~~~lv--~~~vl~~~~~~~li~~l~~~~~ 426 (792)
....+. |.-+.....+-. +..+.-.+++.|+++|+.|+.+
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444444 554444443333 3334456788899999877654
No 91
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=92.21 E-value=1.6 Score=41.12 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=78.0
Q ss_pred ceeEEEEec-cCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccC-CcchhhhhhhhhHHHHHHHHHhhc
Q 038269 618 SLNVAVIFI-GGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKD-NTAELEEEMKIDDECFAEFYERQV 695 (792)
Q Consensus 618 ~~~v~v~f~-GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~e~~~~~~ 695 (792)
..++++++- |.+--++|++.+...+...+..+++..++................ .....+..+...++.+++.++...
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 357888888 888899999999999999999998887765433211000000000 000011122334555555543221
Q ss_pred CCCcEEEEEEecCChH---HHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEE
Q 038269 696 AEGHVAYAEKHLANSS---ETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLI 772 (792)
Q Consensus 696 ~~~~v~y~e~~v~~~~---e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLv 772 (792)
...+...+..+..|. +.+....+ .++.||+++|.++. +.|.+ =-||-+-+-++.. ++++|||
T Consensus 85 -~~~~~~~~~~~~~g~~~~~~i~~~a~-~~~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~---~~~pVlv 149 (154)
T COG0589 85 -AAGVPVVETEVVEGSPSAEEILELAE-EEDADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH---APCPVLV 149 (154)
T ss_pred -HcCCCeeEEEEecCCCcHHHHHHHHH-HhCCCEEEECCCCC---------ccccc-eeeehhHHHHHhc---CCCCEEE
Confidence 112221222222232 33332222 22699999999732 23333 3467777777764 7789999
Q ss_pred Eee
Q 038269 773 IKQ 775 (792)
Q Consensus 773 vqq 775 (792)
|..
T Consensus 150 v~~ 152 (154)
T COG0589 150 VRS 152 (154)
T ss_pred Ecc
Confidence 874
No 92
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=91.94 E-value=1.5 Score=51.27 Aligned_cols=115 Identities=15% Similarity=0.212 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchH-HHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHH
Q 038269 262 AFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSK-WTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFF 340 (792)
Q Consensus 262 ~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~-~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~ 340 (792)
+.+.....+++.+++++.++-+++|+++...+.... .+.. .+...+++|......|+++|...+. ..+..+.
T Consensus 8 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~----~~~~~i~ 80 (525)
T TIGR00831 8 MLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELR----ENFRPIA 80 (525)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHH----HHHHHHH
Confidence 334444556777777777777777777763111100 0111 1224578888888899999987664 2333333
Q ss_pred HHHHHHHhhhH-HHHHHHHHhhCCChHHHHHHHHHhhhhhHHHH
Q 038269 341 FLIVISTAGKV-VGTVICGLMLGFHWPESVSLGLLLSAKGHFYI 383 (792)
Q Consensus 341 ~li~~~~~~K~-l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l 383 (792)
.+.+...+.-. +..+...+..++||..++.+|.++++-..+..
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 33333333322 22333334679999999999999998776654
No 93
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.24 E-value=1.6 Score=51.29 Aligned_cols=122 Identities=12% Similarity=0.169 Sum_probs=71.9
Q ss_pred HHHHHHHHHhHcc-----cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCC
Q 038269 38 YVLTNLAHHLLKP-----MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPP 112 (792)
Q Consensus 38 l~~~~~~~~l~~r-----l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 112 (792)
++++..+++++-| +++-.+.+-+++|+++|..+.. +| +.+.++|+.+|+|.+|++.-+..++.-.
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---i~-------~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~ 84 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---ID-------PGVKAVFFALFIFAIGYEVGPQFFASLK 84 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---CC-------hHHHHHHHHHHHHHhhhccCHHHHHHHH
Confidence 3344444555544 5576688999999999976542 22 1266799999999999999998876444
Q ss_pred c---ccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcC
Q 038269 113 T---RDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLK 171 (792)
Q Consensus 113 ~---~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ 171 (792)
| +...+++.-.++.+++.+++.++++.+. .....++-|+.-++.+.......+.+++
T Consensus 85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~--~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 85 KDGLREIILALVFAVSGLITVYALAKIFGLDK--GTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 4 4444444444445555666666666532 2233344443333333333333444444
No 94
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=90.47 E-value=1.7 Score=51.06 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=75.0
Q ss_pred ccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---hcCCcccchHhHHHHHHH
Q 038269 50 PMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---FKPPTRDAIVAYGGMLST 126 (792)
Q Consensus 50 rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~l~p 126 (792)
++.+-...+-+++|+++|..+.....+-.-.......+.++|+.+|++.+|++--++.+ ++.+.+...++..-.++|
T Consensus 412 p~~lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~ 491 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP 491 (562)
T ss_pred ceeehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455567899999999975422112111234566778999999999999999887655 555556666666666677
Q ss_pred HHHHHHHH-HHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHHhc
Q 038269 127 FILGCSLT-PFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVITNL 170 (792)
Q Consensus 127 ~~~~~~~~-~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~el 170 (792)
.++++.+. ++++.+. ...+| ++=+.|++|.+.......
T Consensus 492 ~~~~~~~~~~~~~~~~------~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 492 LIITMLIGKYVLKYDP------ALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHhCCCH------HHHHHHhhccCCCcHHHHHHHHhc
Confidence 77777776 4565432 23444 344668888777665543
No 95
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=90.36 E-value=2.4 Score=40.83 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=65.0
Q ss_pred CChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhh---cCC-cccchHhHHHHHHHHH
Q 038269 53 QPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIF---KPP-TRDAIVAYGGMLSTFI 128 (792)
Q Consensus 53 ~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~-~~~~~ia~~~~l~p~~ 128 (792)
+-...+-+++|+++|.......++-.-.......+.++|+.+|++.+|++--++.+. +.+ -....++..-.++|.+
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~ 100 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTL 100 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 333678899999999754322122111234667788999999999999999887664 333 1122233333334444
Q ss_pred HHHHHH-HHhhcccchhHHHHHHHHH-HHhhccHHHHHHHHHhcC
Q 038269 129 LGCSLT-PFLHYSTHRKIVVAITLSF-TLAGSGSHILTRVITNLK 171 (792)
Q Consensus 129 ~~~~~~-~~l~~~~~~~~~~al~lg~-~ls~Ts~~vv~~iL~el~ 171 (792)
++..+. ++++.+. ....|+ +=+.|++|.+....+..+
T Consensus 101 ~~~~~~~~~~~~~~------~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 101 LVAVALIKLLRINY------ALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHhCCCH------HHHHHHHhccccChHHHHHHHHHhc
Confidence 444433 4454332 233343 345677777776665443
No 96
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.08 E-value=4.8 Score=38.92 Aligned_cols=120 Identities=13% Similarity=0.040 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhhCch--hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHH
Q 038269 263 FMVAVCSCSPFYGYS--PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFF 340 (792)
Q Consensus 263 ~~l~~~~~ae~~G~~--~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~ 340 (792)
.....+++.+.+|+. .++|+.+++.++.-.....-.+-+.+. .+-.-+.=..+|.+++...+.. -.+.+...+
T Consensus 6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~-~~~~~~~~l 80 (156)
T TIGR03082 6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAE-LKRLWPAAL 80 (156)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHH-HHHHHHHHH
Confidence 344455666777775 678888877776642211111111222 2223334467888888655431 123444455
Q ss_pred HHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhh
Q 038269 341 FLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGA 390 (792)
Q Consensus 341 ~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~ 390 (792)
...+..++.-++..++..+..++++.+++ ++ ..|-|.-++.+.....
T Consensus 81 ~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 81 LSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 55566666677778888899999999885 33 4688888887766544
No 97
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=87.76 E-value=15 Score=40.55 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=67.9
Q ss_pred HHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHH-HHHH
Q 038269 307 LSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHF-YIFL 385 (792)
Q Consensus 307 ~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v-~l~l 385 (792)
..+.|+-.||..+|+..++..+... +..............+..-......+.+.+.+..-++..|-+--.-|+- +.+.
T Consensus 67 l~~~fmliFFttiglsa~~~~lkkg-Gk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~ 145 (404)
T COG0786 67 LQDVFMLIFFATIGLSASFKLLKKG-GKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAW 145 (404)
T ss_pred cccHHHHHHHHHhccccchhHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence 3678899999999999999776533 2222222222222233344444455677788776666553322222332 3445
Q ss_pred HHHhhcccccChhhHHH--HHHHHHHHHhhhhHHHHHhhhhhc
Q 038269 386 AIMGAVHNYITHTTAAS--LVIMIFFTIVHTPFVVQNIIGRAR 426 (792)
Q Consensus 386 ~~~~~~~~~i~~~~~~~--lv~~~vl~~~~~~~li~~l~~~~~ 426 (792)
+....+.|.-+.....+ -.+..+.-.+++.|+.||+.++.+
T Consensus 146 ~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~ 188 (404)
T COG0786 146 GPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNK 188 (404)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcC
Confidence 55666666544433222 233445556778999999987543
No 98
>COG2985 Predicted permease [General function prediction only]
Probab=87.32 E-value=3.1 Score=46.72 Aligned_cols=107 Identities=18% Similarity=0.317 Sum_probs=58.5
Q ss_pred hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhh---hhcCCcccchHhHHHHHHHHHHHHH
Q 038269 56 ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYV---IFKPPTRDAIVAYGGMLSTFILGCS 132 (792)
Q Consensus 56 iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~l~p~~~~~~ 132 (792)
..+-+++|.+++..++. ++ .+.+.. ++|+++|.+.+|+|--+.. +|+.+++-..+++.-++....+.++
T Consensus 37 l~g~L~Vgl~l~~~~~~---i~---~~~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi~~~~~a~~ 108 (544)
T COG2985 37 LFGVLFVGLFLGQYGFT---IN---TDMLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVIAALLLAWV 108 (544)
T ss_pred hhhHhHHHHHhcccccc---cc---cchhhh--hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655432 21 122222 8999999999999998765 5778887776666543333333333
Q ss_pred HHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCC
Q 038269 133 LTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKI 172 (792)
Q Consensus 133 ~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~l 172 (792)
+..+++.+ ......++-|+.-+..+..-...++.|++.
T Consensus 109 l~k~~~~~--~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~ 146 (544)
T COG2985 109 LHKLFGID--LGLIAGMFSGALTSTPGLGAAQDILRELGA 146 (544)
T ss_pred HHhhcCCC--HHHhhhhhcccccCCchhHHHHHHHHhhcc
Confidence 33333322 112223333443333444445556666664
No 99
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=87.13 E-value=3.2 Score=40.18 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhHcccCCC--hhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcc
Q 038269 37 AYVLTNLAHHLLKPMHQP--RITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTR 114 (792)
Q Consensus 37 il~~~~~~~~l~~rl~~P--~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~ 114 (792)
.+.++.+.+++++++|+| .++|-++++.++.-.+..+.-+| ..+.+++.+++--.+|.+++.+.+++..+.
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P-------~~~~~~~qviiG~~iG~~f~~~~l~~~~~~ 75 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLP-------PWLLALAQVVIGILIGSRFTREVLAELKRL 75 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCC-------HHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 455677788899999988 56777777766653332111122 244556667777889999999998776554
Q ss_pred cchHhHHHHHHHHHHHHHHHHHh
Q 038269 115 DAIVAYGGMLSTFILGCSLTPFL 137 (792)
Q Consensus 115 ~~~ia~~~~l~p~~~~~~~~~~l 137 (792)
.. ..+...+...+++...++++
T Consensus 76 ~~-~~l~~~~~~l~~~~~~~~~l 97 (156)
T TIGR03082 76 WP-AALLSTVLLLALSALLAWLL 97 (156)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHH
Confidence 33 22333333444444444333
No 100
>PRK10490 sensor protein KdpD; Provisional
Probab=86.32 E-value=4.8 Score=50.37 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=80.0
Q ss_pred CcceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269 443 NQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS 522 (792)
Q Consensus 443 ~elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 522 (792)
...|||+|+....+.+.+++-+..++.. .....+++|+..-..+. .+ .+..+++.+.++
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~------------~~------~~~~~~l~~~~~- 307 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHR------------LP------EKKRRAILSALR- 307 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCc------------CC------HHHHHHHHHHHH-
Confidence 4568999999888999999998888865 34579999975321100 00 112244555554
Q ss_pred hhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCC-CceEEE
Q 038269 523 YVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNAT-CSVGIL 600 (792)
Q Consensus 523 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ap-CsVgIl 600 (792)
.+++-++ .+... .. +++++.|.+.|++++++-|+||=.++.+ + -.-+++-+++++++| -+|=|+
T Consensus 308 lA~~lGa--~~~~~--~~--~dva~~i~~~A~~~~vt~IViG~s~~~~----~----~~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 308 LAQELGA--ETATL--SD--PAEEKAVLRYAREHNLGKIIIGRRASRR----W----WRRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred HHHHcCC--EEEEE--eC--CCHHHHHHHHHHHhCCCEEEECCCCCCC----C----ccCCCHHHHHHHhCCCCCEEEE
Confidence 4443232 33322 23 8899999999999999999999654321 1 012367889999998 455444
No 101
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=86.19 E-value=7.4 Score=43.65 Aligned_cols=166 Identities=9% Similarity=0.078 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhHcc--cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhc
Q 038269 33 GLLLAYVLTNLAHHLLKP--MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFK 110 (792)
Q Consensus 33 ~i~lil~~~~~~~~l~~r--l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 110 (792)
.+.+.+.++..+...++. +.+|..+.-+++|+++.+..-...... -.++.++.++++++-+++-.+=..+++..+..
T Consensus 223 ~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~-~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~ 301 (398)
T TIGR00210 223 LIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPW-VAERAVSVIGNVSLSLFLAIALMSLQLWELAD 301 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 344444455566665654 779999999999999997532111111 23458999999999999988888999999999
Q ss_pred CCcccchHhHHHHHHHHHHHHH-HHHHhhcccchhHHHHHHHHHHHhhccHH--HHHHHHHhcCCCCCchhHHHHHHHHH
Q 038269 111 PPTRDAIVAYGGMLSTFILGCS-LTPFLHYSTHRKIVVAITLSFTLAGSGSH--ILTRVITNLKIGKSDIGKLGMAAGIH 187 (792)
Q Consensus 111 ~~~~~~~ia~~~~l~p~~~~~~-~~~~l~~~~~~~~~~al~lg~~ls~Ts~~--vv~~iL~el~ll~s~~g~l~l~~a~i 187 (792)
..-..+.+.+.+++........ ....++..-+..-..+-..|..+..|+.+ -.-.+-++++-.++-.=-.=+-.+.+
T Consensus 302 ~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~ 381 (398)
T TIGR00210 302 LAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFF 381 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHH
Confidence 9888888888888877654433 33344321110001112445555444432 22333344554333333333456788
Q ss_pred HHHHHHHHHHHH
Q 038269 188 SDMITMLIICIG 199 (792)
Q Consensus 188 ~Di~~~~ll~i~ 199 (792)
-|+...+++...
T Consensus 382 id~~n~~~i~~f 393 (398)
T TIGR00210 382 IDIINALVIKQF 393 (398)
T ss_pred HHHhhHHHHHHH
Confidence 888776665543
No 102
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=86.01 E-value=5.6 Score=39.45 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhHccc---CCChhHHHHHHHhhccCcccccccc-ccccHHHHHHHHHHHHH-------HHHHHHhhc
Q 038269 34 LLLAYVLTNLAHHLLKPM---HQPRITSDIVIGLFLGNIQPIRNGF-ELEMIQTLNYIVEFGMI-------CYMFVLGLE 102 (792)
Q Consensus 34 i~lil~~~~~~~~l~~rl---~~P~iv~~IlaGillGp~~~~~~lf-~~~~~~~l~~l~~lgl~-------~llF~~Gle 102 (792)
+.++=+.-.+.+++.||+ |++.----|+.|+++...+.. .- ..+....+..++-+|++ |-.-..+.|
T Consensus 18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~--~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf~ 95 (254)
T TIGR00808 18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGV--YTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATAFE 95 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHccc--ccCCccccchhhhhcchhhhhhHHHHHHHHHHHhhc
Confidence 333334444555566654 677777778889988765321 00 11222233344444433 123346789
Q ss_pred cChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhccc
Q 038269 103 MDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYST 141 (792)
Q Consensus 103 ~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~ 141 (792)
.|.+++||.+..-..--+.+.++||++|..+++.++|..
T Consensus 96 v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 96 VDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred CcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999988777777889999999999999998853
No 103
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=85.98 E-value=42 Score=34.32 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=78.3
Q ss_pred hHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHh
Q 038269 296 SKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLL 375 (792)
Q Consensus 296 ~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l 375 (792)
++.+..-+++-+-.+..|+|= +++.+. +.|..+..-++++.+.-++..++.++++|.+..- . ..+
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYk-------q~~~ik----~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~--~--~Sl 125 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYK-------QRHLIK----RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPEL--I--LSL 125 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--H--HHh
Confidence 344555555555556666652 122232 4566666667777777888888889999987643 2 346
Q ss_pred hhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHh
Q 038269 376 SAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNI 421 (792)
Q Consensus 376 ~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l 421 (792)
.||....-+...+..+.|-+.+-+-..++++-++-+.++|++.|++
T Consensus 126 ~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 126 LPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999888888888888888777777778888888888888875
No 104
>PRK04972 putative transporter; Provisional
Probab=85.92 E-value=9.3 Score=44.97 Aligned_cols=104 Identities=14% Similarity=0.285 Sum_probs=69.1
Q ss_pred cccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---hcCCcccchHhHHHHHH
Q 038269 49 KPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---FKPPTRDAIVAYGGMLS 125 (792)
Q Consensus 49 ~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~l~ 125 (792)
+.+++-...|-+++|+++|..+.. .| ..+.++|+.+|+|.+|++.-+..+ |+.+.+...+++...++
T Consensus 33 ~~~~LG~~~g~L~vgl~~g~~~~~---~~-------~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~ 102 (558)
T PRK04972 33 GSIQLGNSIGVLVVSLLLGQQHFS---IN-------TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS 102 (558)
T ss_pred eeEecCcchHHHHHHHHHHhCCCC---CC-------hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 446677777999999999976532 22 123579999999999999988765 45555666677766677
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHH
Q 038269 126 TFILGCSLTPFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVIT 168 (792)
Q Consensus 126 p~~~~~~~~~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~ 168 (792)
+.++++.+.++++.+. ....| .+=+.|++|.+.....
T Consensus 103 ~~~~~~~~~~~~~~~~------~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 103 ALVIALGLGKLFGWDI------GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHHhCCCH------HHHHHHhhccccCcHHHHHHHH
Confidence 7777777777776532 12222 2334466666665544
No 105
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=85.81 E-value=3.5 Score=44.14 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=59.0
Q ss_pred hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHH
Q 038269 56 ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTP 135 (792)
Q Consensus 56 iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~ 135 (792)
.+--++.|+++|+... +..+.++.-..+++.++.|..|.++|++.+.+.+.+.+.+++..+++++.+++.+..
T Consensus 169 lilpILiGmilGNld~-------~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~r 241 (312)
T PRK12460 169 ALLPLVLGMILGNLDP-------DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADR 241 (312)
T ss_pred HHHHHHHHHHHhccch-------hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888421 112333333334788899999999999999999999999999999999999988888
Q ss_pred Hhhc
Q 038269 136 FLHY 139 (792)
Q Consensus 136 ~l~~ 139 (792)
+++.
T Consensus 242 llg~ 245 (312)
T PRK12460 242 LVGG 245 (312)
T ss_pred HhCC
Confidence 7754
No 106
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=85.02 E-value=12 Score=40.73 Aligned_cols=133 Identities=11% Similarity=0.153 Sum_probs=77.1
Q ss_pred cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHH-HHHH
Q 038269 51 MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLS-TFIL 129 (792)
Q Consensus 51 l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~-p~~~ 129 (792)
++.|.+++.+ .|+++...+.. +|..-.+.++.+++...-+-||..|+.++.+.+++.++........-.++ |.+.
T Consensus 180 ~~nP~iia~i-~Gl~~~~~~i~---lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~ 255 (321)
T TIGR00946 180 IKFPPLWAPL-LSVILSLVGFK---MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVM 255 (321)
T ss_pred HhCCChHHHH-HHHHHHHHhhc---CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHH
Confidence 5677777654 45666654432 45455788999999999999999999999988877766666555555544 5544
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 038269 130 GCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLII 196 (792)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll 196 (792)
+.+...++.+. . ..-...+++...+++...++.+.--.+. +.+-+.-.++-+++++.+
T Consensus 256 -~~~~~~~~l~~--~---~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tl 313 (321)
T TIGR00946 256 -AGISKLIGLRG--L---ELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISL 313 (321)
T ss_pred -HHHHHHhCCCh--H---HHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHH
Confidence 44444554322 1 1222334444444445555544321232 344444444444444433
No 107
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=81.89 E-value=66 Score=33.18 Aligned_cols=83 Identities=8% Similarity=0.011 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhh
Q 038269 335 TWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHT 414 (792)
Q Consensus 335 ~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~ 414 (792)
.|..+++-++++.+.-+++++..++++|.+..- -..+.+|..-.-+...+..+.|-+..-+-..++++-++-.+++
T Consensus 92 ~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~----~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g 167 (232)
T PRK04288 92 YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAV----MASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALG 167 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 455555556666777777888888998887632 2346799998888888888888776666666666777777777
Q ss_pred hHHHHHh
Q 038269 415 PFVVQNI 421 (792)
Q Consensus 415 ~~li~~l 421 (792)
|++.|++
T Consensus 168 ~~llk~~ 174 (232)
T PRK04288 168 AKFLKLF 174 (232)
T ss_pred HHHHHHc
Confidence 8877764
No 108
>PRK04972 putative transporter; Provisional
Probab=81.69 E-value=8.8 Score=45.20 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=78.9
Q ss_pred HHHHHHHHHhHcc-----cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---h
Q 038269 38 YVLTNLAHHLLKP-----MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---F 109 (792)
Q Consensus 38 l~~~~~~~~l~~r-----l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~ 109 (792)
+++..+++.+-=+ +++-.--|.+++|+++|...-....+-.-.......+.++|+.+|+..+|+.--.+.+ +
T Consensus 390 i~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~ 469 (558)
T PRK04972 390 FIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLG 469 (558)
T ss_pred HHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 3344455544333 3344456889999999975432222211235677789999999999999998876554 4
Q ss_pred cCCcccchHhHHHHHHHHHHHHHHH-HHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHHh
Q 038269 110 KPPTRDAIVAYGGMLSTFILGCSLT-PFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVITN 169 (792)
Q Consensus 110 ~~~~~~~~ia~~~~l~p~~~~~~~~-~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~e 169 (792)
+.+.+...++..-.++|.++++.++ ++++.+. ...+| ++=+.|++|.+......
T Consensus 470 ~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~------~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 470 AVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNR------ALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHhCCCCCcHHHHHHHhh
Confidence 5555666666666777877777776 4454331 23444 44566887777665544
No 109
>PRK03818 putative transporter; Validated
Probab=80.15 E-value=30 Score=40.69 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=68.5
Q ss_pred hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhc----CCcccchHhHHHHHHHHHHHH
Q 038269 56 ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFK----PPTRDAIVAYGGMLSTFILGC 131 (792)
Q Consensus 56 iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~l~p~~~~~ 131 (792)
.-|-+++|+++|.......++-.-.......+.++|+.+|+..+|++-=...+.. .+.+...++..-.++|.++++
T Consensus 403 ~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~ 482 (552)
T PRK03818 403 AGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVG 482 (552)
T ss_pred chHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4678999999997543322221123556778889999999999999987766543 344555666666667777777
Q ss_pred HHH-HHhhcccchhHHHHHHHH-HHHhhccHHHHHHH
Q 038269 132 SLT-PFLHYSTHRKIVVAITLS-FTLAGSGSHILTRV 166 (792)
Q Consensus 132 ~~~-~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~i 166 (792)
.++ ++++.+. ...+| .+=+.|++|.+...
T Consensus 483 ~~~~~~~~~~~------~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 483 ILARMLAKMNY------LTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHcCCH------HHHHHHHhccCCCcHHHHHH
Confidence 775 4555432 23444 34566777777654
No 110
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=79.47 E-value=0.28 Score=54.77 Aligned_cols=109 Identities=18% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhCchhhHHHHHHhhhcCCCCcch--HHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHH
Q 038269 264 MVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMS--KWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFF 341 (792)
Q Consensus 264 ~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~--~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~ 341 (792)
.+....+.+.++++.++|-.++|+++.... +. +.-.+..+.+ ..+.+++.....|+++|.+.+.. .+.....
T Consensus 8 ~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~----~~~~~~~ 81 (380)
T PF00999_consen 8 AFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR----NWRRALA 81 (380)
T ss_dssp -----------------------------------------S-SS-HHHHS--SSHHHHTTGGGG---------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc----ccccccc
Confidence 444444688899999999999999998642 22 1112334444 67788888888999999977642 2333333
Q ss_pred HHHHHHhhhHHH-HHHHHH---hhCCChHHHHHHHHHhhhh
Q 038269 342 LIVISTAGKVVG-TVICGL---MLGFHWPESVSLGLLLSAK 378 (792)
Q Consensus 342 li~~~~~~K~l~-~~l~~~---~~~~~~re~~~lg~~l~~k 378 (792)
+.+..++.-++. .+.... ..++++.+++.+|..+++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~t 122 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSAT 122 (380)
T ss_dssp --------------------------------TTHHHHTT-
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcc
Confidence 333444444444 344443 4788999999999877654
No 111
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=78.68 E-value=14 Score=37.02 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHH
Q 038269 338 RFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAI 387 (792)
Q Consensus 338 ~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~ 387 (792)
..+.+-+...++-+++.++.+++.+++++|++.++..++--..-...+..
T Consensus 57 ~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 57 RALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 34566677778899999999999999999999998887766655555544
No 112
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=78.56 E-value=8.1 Score=41.94 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=73.3
Q ss_pred HHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHH
Q 038269 305 YLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIF 384 (792)
Q Consensus 305 ~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~ 384 (792)
.+.++++=|+.|.-+|..+|+.-+. .++.... +.-..+-++-+ .+++.+...|++.+|+-.+|.+=+.-|-.++.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpll-anP~~~l---l~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf 175 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFIL-ARPWASI---TVALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLF 175 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHH-hChHHHH---HHHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHH
Confidence 3456888889999999999997553 3332221 11223334433 35566677899999999999988888988888
Q ss_pred HHHHhh-c-ccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhccc
Q 038269 385 LAIMGA-V-HNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKH 428 (792)
Q Consensus 385 l~~~~~-~-~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~ 428 (792)
+.+... + .+-|.-..|+-| -+.=++-||++|.+-.+++|.
T Consensus 176 ~s~kLAp~Llg~IaVAAYsYM----aLVPiiqPpimklLttkkER~ 217 (399)
T TIGR03136 176 ASLILAKDLFVPISIIAYLYL----SLTYAGYPYLIKLLVPKKYRG 217 (399)
T ss_pred HHHhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhhcCHHHHc
Confidence 776432 1 122222333322 233456799999987655553
No 113
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=78.55 E-value=32 Score=39.20 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=50.2
Q ss_pred hhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh--CCChHHHHHHHHHhhhhhHHHHHH
Q 038269 309 TLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML--GFHWPESVSLGLLLSAKGHFYIFL 385 (792)
Q Consensus 309 ~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~--~~~~re~~~lg~~l~~kG~v~l~l 385 (792)
.+++|+-...-|+++|.+.+. +.|..+..+.....+...+++....++. ++|+..++.+|.++++-..+.+.-
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~----~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELR----RVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 667777777789999987764 2444444545555555555555555554 899999999999998877666543
No 114
>COG3329 Predicted permease [General function prediction only]
Probab=77.71 E-value=54 Score=34.87 Aligned_cols=139 Identities=9% Similarity=0.033 Sum_probs=79.0
Q ss_pred chhhHHHHHHhhhcCCCC---cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHH
Q 038269 276 YSPILSAFMAGIFFPSEG---RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVV 352 (792)
Q Consensus 276 ~~~~lgafvaGl~l~~~~---~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l 352 (792)
+++.+.-|+.|++++-.. .+...+.+.+ .-.++--.=..-|+.+.-+.++ .....++.-+.+.++.-++
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~l----slyLL~aIG~kGGveir~snl~----a~v~~~~~~~aL~~li~~i 87 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQAL----SLYLLLAIGFKGGVEIRNSNLT----AMVLPVALGVALGFLIVFI 87 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHH----HHHHHHHHhcccceeeecCCcc----hhHHHHHHHHHHHHHHHHH
Confidence 367788888888877521 1111222211 1111111112224444333332 2344444555566666777
Q ss_pred HHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHH-HHHhhhhHHHHHhh
Q 038269 353 GTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIF-FTIVHTPFVVQNII 422 (792)
Q Consensus 353 ~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~v-l~~~~~~~li~~l~ 422 (792)
..++..++.|++..|+...+-..+.-..+.++.+...++..-+..+-|...++... .-.+++..++..+|
T Consensus 88 a~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y 158 (372)
T COG3329 88 AYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIY 158 (372)
T ss_pred HHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 78888888999999999999888888888888888777765566665554333222 22334444444444
No 115
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=77.58 E-value=19 Score=40.16 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=52.2
Q ss_pred HhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHH
Q 038269 303 VNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFY 382 (792)
Q Consensus 303 l~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~ 382 (792)
+.+++..+.+.+...--|++++++.+.. ..|....+..+...+.-.+....+.+.++.+|-|++.+|.+.+..-..+
T Consensus 59 ~Ay~vg~lALaiILfdgG~~T~lss~r~---a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAA 135 (574)
T COG3263 59 FAYMVGNLALAIILFDGGFGTQLSSFRV---AAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAA 135 (574)
T ss_pred HHHHHHHHHHHHHhhcCccCCcHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHH
Confidence 3344556666666667789998766642 2344444445555566666667778889999999999999776654433
Q ss_pred H
Q 038269 383 I 383 (792)
Q Consensus 383 l 383 (792)
.
T Consensus 136 V 136 (574)
T COG3263 136 V 136 (574)
T ss_pred H
Confidence 3
No 116
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=77.06 E-value=13 Score=41.49 Aligned_cols=106 Identities=8% Similarity=-0.007 Sum_probs=58.7
Q ss_pred HHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHH-hhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHH
Q 038269 281 SAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFF-WMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGL 359 (792)
Q Consensus 281 gafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~-~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~ 359 (792)
....+|.+..+..-+.++-.+.+..++..+++|.+.. .++-..+...+ ..++.+.+..++..+.-++..++..+
T Consensus 11 ~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 11 LIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDL-----LSLWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544556666778888889999998854 44443333222 12333333333333334455566667
Q ss_pred hhCCChHHHH--HHHHHhhhhhHHHHHHHHHhhc
Q 038269 360 MLGFHWPESV--SLGLLLSAKGHFYIFLAIMGAV 391 (792)
Q Consensus 360 ~~~~~~re~~--~lg~~l~~kG~v~l~l~~~~~~ 391 (792)
+++.+.++.- .++...+.-|.+.+.+....+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g 119 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQALFG 119 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHHHHhc
Confidence 6676665543 3343445567777766655443
No 117
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=76.20 E-value=17 Score=39.18 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=73.1
Q ss_pred HHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHH
Q 038269 307 LSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLA 386 (792)
Q Consensus 307 ~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~ 386 (792)
.++++=|+.|.-+|..+|+.-+. .++.. .++-..+-++ ...+++.+...|++.+|+-.+|.+=+.-|-.++.+.
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpll-anP~~----~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s 140 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLL-ANPKT----LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVS 140 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHH-hCHHH----HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHH
Confidence 46888889999999999997553 33322 2222333333 334566677889999999999998888898888877
Q ss_pred HHhh-c-ccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhcccC
Q 038269 387 IMGA-V-HNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHA 429 (792)
Q Consensus 387 ~~~~-~-~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~~ 429 (792)
+..- + .+.+.-..|+-| -+.=++-||++|.+-.+++|..
T Consensus 141 ~~LAp~LlgpIaVaAYsYM----aLvPiiqPpimklLttkkeR~I 181 (360)
T PF03977_consen 141 SKLAPHLLGPIAVAAYSYM----ALVPIIQPPIMKLLTTKKERKI 181 (360)
T ss_pred HhhhHHHHHHHHHHHHHHH----HHHhhhhhHHHHHhcCHHHHhc
Confidence 6432 1 122222333322 2334567999999876555543
No 118
>PRK09903 putative transporter YfdV; Provisional
Probab=76.00 E-value=36 Score=36.92 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=62.3
Q ss_pred cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHH-HHHHH
Q 038269 51 MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGML-STFIL 129 (792)
Q Consensus 51 l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l-~p~~~ 129 (792)
++-|.+++.+ +|+++.-.+.. +|..-.+.++.+++...-+-||..|..+....++.. ++.+.....-.+ .|++.
T Consensus 171 ~~nP~iia~~-~gl~~~l~~i~---lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P~i~ 245 (314)
T PRK09903 171 AKEPVVWAPV-LATILVLVGVK---IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMPLAL 245 (314)
T ss_pred HhchHHHHHH-HHHHHHHcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHH
Confidence 3456666654 45555433322 454567889999999999999999999877665443 333333333333 46654
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhc
Q 038269 130 GCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNL 170 (792)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el 170 (792)
+....+++.+. . ..-...+++.+..++.+.++.+.
T Consensus 246 -~~~~~~~~l~~-~----~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 246 -LLVGMACHLNS-E----HLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred -HHHHHHcCCCc-H----HHHHHHHHHcccHHHHHHHHHHH
Confidence 33334444322 1 12334455555555566666543
No 119
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=74.83 E-value=72 Score=32.65 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=71.0
Q ss_pred HHHHhHcccC----CChhHHHHHHHhhccC--ccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccc
Q 038269 43 LAHHLLKPMH----QPRITSDIVIGLFLGN--IQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDA 116 (792)
Q Consensus 43 ~~~~l~~rl~----~P~iv~~IlaGillGp--~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~ 116 (792)
+..++.||.+ .|-+++.++...++=. .++.. - .+..+.++.+-.- .-.-|..-+--+++.+||+|+...
T Consensus 20 ~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~-Y--~~g~~~i~~lLgP--AtVAlAvPLYkq~~~ik~~w~~I~ 94 (230)
T COG1346 20 AAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYED-Y--MKGGQWINFLLGP--ATVALAVPLYKQRHLIKRHWKPIL 94 (230)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHH-H--hcccHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455666766 3555555444333321 11110 0 1344555554333 334456667778999999999988
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH-HHhhccHHHHHHHHHhcCCCCC
Q 038269 117 IVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSF-TLAGSGSHILTRVITNLKIGKS 175 (792)
Q Consensus 117 ~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~-~ls~Ts~~vv~~iL~el~ll~s 175 (792)
.-...|.++.+..+..++.+++.+. .+..+. -=|+|. |+...+-++++-.+.
T Consensus 95 ~g~~vGs~~ai~s~~llak~~g~~~------~~~~Sl~PkSvTT-piAm~vs~~iGGip~ 147 (230)
T COG1346 95 AGVLVGSVVAIISGVLLAKLFGLSP------ELILSLLPKSVTT-PIAMEVSESIGGIPA 147 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHhccccccc-HHHHHHHHhcCCchH
Confidence 7777888888888888888887543 122222 234454 777777777775443
No 120
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=74.72 E-value=16 Score=39.78 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhHcccCCCh--hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhh
Q 038269 32 VGLLLAYVLTNLAHHLLKPMHQPR--ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIF 109 (792)
Q Consensus 32 ~~i~lil~~~~~~~~l~~rl~~P~--iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 109 (792)
.++.+++.++.+.+++++|+|+|. ++|-++++.++.-.+....-+| .. +..++.+++=-.+|.+++.+.+|
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P----~~---l~~~aqv~iG~~iG~~f~~~~l~ 227 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLP----PW---LVNAAQVLIGASIGSRFTRETLR 227 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCC----HH---HHHHHHHHHHHHHHccccHHHHH
Confidence 345556667788899999999875 5666666666654432211122 33 44455555667899999999987
Q ss_pred cCCccc
Q 038269 110 KPPTRD 115 (792)
Q Consensus 110 ~~~~~~ 115 (792)
+..|-.
T Consensus 228 ~~~~~~ 233 (318)
T PF05145_consen 228 ELRRLL 233 (318)
T ss_pred HHHHHH
Confidence 765443
No 121
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=74.22 E-value=1.3e+02 Score=32.22 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=55.5
Q ss_pred HhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHH
Q 038269 308 STLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAI 387 (792)
Q Consensus 308 ~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~ 387 (792)
..+++=.|++.++...|++.+. . . ...++..+...+...+..+..+++++.+..+-.... +-|..|-.+.....
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~-t-a---P~~i~~gf~il~~h~~v~f~~~KlF~~dL~~i~~As-lAniGG~~sAp~~A 348 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIV-T-A---PLIILFGFIILISHLAVSFAAGKLFRVDLEEILLAS-LANIGGPTSAPAMA 348 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHH-h-h---hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhccCCccchhHHH
Confidence 4556667888999999986552 1 2 222333444455667777788899998887655444 47888888888877
Q ss_pred HhhcccccC
Q 038269 388 MGAVHNYIT 396 (792)
Q Consensus 388 ~~~~~~~i~ 396 (792)
.++++..+.
T Consensus 349 ~A~nr~lv~ 357 (384)
T COG5505 349 IAKNRELVA 357 (384)
T ss_pred hhcCchhcc
Confidence 777655443
No 122
>PRK10490 sensor protein KdpD; Provisional
Probab=73.42 E-value=25 Score=44.07 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=73.6
Q ss_pred cceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269 617 ASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA 696 (792)
Q Consensus 617 ~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~ 696 (792)
...||+|..-|+|..+..+..|+|||+.-++.++++++-..+... . ..+.++++.+ .+ ++.++.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~-----------~-~~~~~~~l~~-~~-~lA~~l-- 312 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR-----------L-PEKKRRAILS-AL-RLAQEL-- 312 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc-----------C-CHHHHHHHHH-HH-HHHHHc--
Confidence 456899999999999999999999999999999999986432110 0 0112222222 22 233322
Q ss_pred CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 697 EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 697 ~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
+.. +... .+.|+..+|-+.+. +-+-+|+|+.++. -| +- -|-+-|-|.-.. .+.-|.||
T Consensus 313 Ga~--~~~~---~~~dva~~i~~~A~~~~vt~IViG~s~~~---------~~--~~-~~s~~~~l~r~~--~~idi~iv 372 (895)
T PRK10490 313 GAE--TATL---SDPAEEKAVLRYAREHNLGKIIIGRRASR---------RW--WR-RESFADRLARLG--PDLDLVIV 372 (895)
T ss_pred CCE--EEEE---eCCCHHHHHHHHHHHhCCCEEEECCCCCC---------CC--cc-CCCHHHHHHHhC--CCCCEEEE
Confidence 222 2222 24456666666643 4788999998752 25 21 256667666432 33456666
No 123
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=71.18 E-value=11 Score=39.61 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=25.5
Q ss_pred EeccCcChHHHHHHHHHHhcCC-CeEEEEEEe
Q 038269 624 IFIGGKDDREALAYASRVARHP-AVKLTVIRF 654 (792)
Q Consensus 624 ~f~GG~ddreAL~~a~rma~~~-~v~ltv~r~ 654 (792)
++.=.|.|+-|++.|.|+.++. +.++|++.+
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~ 62 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSV 62 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEE
Confidence 3444789999999999999875 489999976
No 124
>PRK12342 hypothetical protein; Provisional
Probab=70.77 E-value=11 Score=39.59 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=25.0
Q ss_pred EeccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 038269 624 IFIGGKDDREALAYASRVARHPAVKLTVIRF 654 (792)
Q Consensus 624 ~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 654 (792)
++.=.|.|+-|++-|.|+.+ .+.++|++.+
T Consensus 30 ~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~ 59 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLAT-DGDEIAALTV 59 (254)
T ss_pred CccCChhhHHHHHHHHHHhh-cCCEEEEEEe
Confidence 44447899999999999995 5789999976
No 125
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=70.33 E-value=28 Score=41.96 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=77.1
Q ss_pred CcceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269 443 NQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS 522 (792)
Q Consensus 443 ~elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 522 (792)
...|||+|+........+++-+..++..- ....+++|+..-..+..+ ....+++...++-
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~~------------------~~~~~~l~~~~~L 306 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRLS------------------EKEARRLHENLRL 306 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHh--CCCeEEEEEecccccccc------------------HHHHHHHHHHHHH
Confidence 34699999987778888888888877553 345788887542221110 0122444444443
Q ss_pred hhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCC-Cce
Q 038269 523 YVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNAT-CSV 597 (792)
Q Consensus 523 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ap-CsV 597 (792)
-++. ++ +..+..+ .++.+.|.+.|++.+++-|++|=+++.+--- ...+++.+++++++| -+|
T Consensus 307 ae~l-Ga----e~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~------~~~~~l~~~L~~~~~~idv 369 (890)
T COG2205 307 AEEL-GA----EIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRR------LFKGSLADRLAREAPGIDV 369 (890)
T ss_pred HHHh-CC----eEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHH------HhcccHHHHHHhcCCCceE
Confidence 3332 22 2334445 8999999999999999999999765432100 012567788999887 344
No 126
>COG0679 Predicted permeases [General function prediction only]
Probab=67.51 E-value=1.9e+02 Score=31.34 Aligned_cols=138 Identities=11% Similarity=0.145 Sum_probs=82.2
Q ss_pred hhhHHHHHHhhhcCCC-CcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHH
Q 038269 277 SPILSAFMAGIFFPSE-GRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTV 355 (792)
Q Consensus 277 ~~~lgafvaGl~l~~~-~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~ 355 (792)
+|.+=|+++|+++... -+....+.+-++.+ .+...|+-.+.+|+.++...... .....+......-.+..++.++
T Consensus 168 nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~---~~~~~~~~~~~~kll~~Pl~~~ 243 (311)
T COG0679 168 NPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKG---SKPPIILIALSLKLLLAPLVAL 243 (311)
T ss_pred CcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhcc---ccchhHHHHHHHHHHHHHHHHH
Confidence 5666666667666632 13334555556655 78899999999999999743322 2233233323334666777788
Q ss_pred HHHHhhCCChHHHHHHHH-HhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHh
Q 038269 356 ICGLMLGFHWPESVSLGL-LLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNI 421 (792)
Q Consensus 356 l~~~~~~~~~re~~~lg~-~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l 421 (792)
+.++.++++.-+...+=+ ...|-+....+++.. .+.-.+...+.+.++++++.++.|...-++
T Consensus 244 ~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 244 LVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887655422211 134656555555544 444445556666667777666666655543
No 127
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=66.81 E-value=2.1e+02 Score=31.58 Aligned_cols=87 Identities=21% Similarity=0.173 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCcccc--c-cc-----ccc-----------ccHHHHHHHHHHH
Q 038269 31 IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPI--R-NG-----FEL-----------EMIQTLNYIVEFG 91 (792)
Q Consensus 31 l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~--~-~l-----f~~-----------~~~~~l~~l~~lg 91 (792)
.-++.++++...+++.-.+|---|-+.-.|-.|+++.+.+.. . .. .+. .....++.+-++|
T Consensus 22 ~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~g 101 (399)
T TIGR03136 22 ITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFT 101 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHH
Confidence 445556666666666667777789999999999999987631 0 00 110 0113344344443
Q ss_pred HH------HHHHHHhhccChhhhhcCCcccch
Q 038269 92 MI------CYMFVLGLEMDPYVIFKPPTRDAI 117 (792)
Q Consensus 92 l~------~llF~~Gle~d~~~l~~~~~~~~~ 117 (792)
+. ++.+-+|-=+|+.-+..+.|..+.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll 133 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASIT 133 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHH
Confidence 32 233446778888888888877765
No 128
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=66.30 E-value=9 Score=43.57 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=51.7
Q ss_pred hhHHHHHHHhhcCCcEEEec---CCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCCCC--c--ccccccccc
Q 038269 545 MPQDICILAEDLMVSLIILP---FHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGS--I--ENISRSQAA 617 (792)
Q Consensus 545 m~~dI~~~a~e~~~~liilp---~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~~~--~--~~~~~~~~~ 617 (792)
-.|+||.+|+++++|+|++| ||.+..+ ...-...++.+-+.-+..-||..-++-|.+... . .++- -.+.
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPS---r~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VN-Y~Dp 115 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPS---RKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVN-YEDP 115 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCcc---HHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceec-ccCC
Confidence 34799999999999999999 4533211 111123344455555667899999998886321 1 1110 1233
Q ss_pred ceeEEEEecc--CcCh
Q 038269 618 SLNVAVIFIG--GKDD 631 (792)
Q Consensus 618 ~~~v~v~f~G--G~dd 631 (792)
..+|.+|.|+ |.+|
T Consensus 116 NlNIsIPVFsIHGNHD 131 (646)
T KOG2310|consen 116 NLNISIPVFSIHGNHD 131 (646)
T ss_pred CcceeeeeEEeecCCC
Confidence 4689999887 6644
No 129
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=65.14 E-value=44 Score=36.61 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCChhHHHHHHHhhccCccccccccccccHH---HHH-HHHHHHHHHHHHHHhhc-cChhhhhcCC-cccchHhHHHHHH
Q 038269 52 HQPRITSDIVIGLFLGNIQPIRNGFELEMIQ---TLN-YIVEFGMICYMFVLGLE-MDPYVIFKPP-TRDAIVAYGGMLS 125 (792)
Q Consensus 52 ~~P~iv~~IlaGillGp~~~~~~lf~~~~~~---~l~-~l~~lgl~~llF~~Gle-~d~~~l~~~~-~~~~~ia~~~~l~ 125 (792)
++|..+..++.|+++--.++ .|.+..+ ... .+..--...+|+-.|+. .|++++.+.. .+.+.+.+.+++-
T Consensus 203 ~Ih~~v~mII~~vi~k~~gl----lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg 278 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGL----VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVA 278 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHH
Confidence 68999999999999887654 3432222 222 22222223344447886 8999998877 4444455555554
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHhh
Q 038269 126 TFILGCSLTPFLHYSTHRKIVVAITLSFTLAG 157 (792)
Q Consensus 126 p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~ 157 (792)
-.+.++.++.++++.+ ...++.-|.+++.
T Consensus 279 ~ii~s~lvGKllG~YP---iE~aItagLC~~~ 307 (347)
T TIGR00783 279 MILGGAFLGKLMGMYP---VESAITAGLCNSG 307 (347)
T ss_pred HHHHHHHHHHHhCCCh---HHHHHHHhhhccC
Confidence 5555667777777532 2345665666655
No 130
>COG2431 Predicted membrane protein [Function unknown]
Probab=62.74 E-value=76 Score=33.42 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=48.4
Q ss_pred hhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccC---hhhhh-cCCcccchHhHHHHHHHHHHH
Q 038269 55 RITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMD---PYVIF-KPPTRDAIVAYGGMLSTFILG 130 (792)
Q Consensus 55 ~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d---~~~l~-~~~~~~~~ia~~~~l~p~~~~ 130 (792)
++.+..+.|+++|-.... .+ ...+...+..+.+++|.+|.++. ...-+ .-.|+.+.+++..++-..+-|
T Consensus 108 k~~~~vl~g~~~G~l~~~--~~-----~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ilssliGG 180 (297)
T COG2431 108 KLLGVVLLGLALGLLTGS--FL-----NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLSSLIGG 180 (297)
T ss_pred HHHHHHHHHHHHHHHhcc--cc-----cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHHHHHHH
Confidence 567778888888854321 12 11455677889999999999987 22111 122666667666665555555
Q ss_pred HHHHHHhhc
Q 038269 131 CSLTPFLHY 139 (792)
Q Consensus 131 ~~~~~~l~~ 139 (792)
.+.+.+++.
T Consensus 181 ~iaa~~l~l 189 (297)
T COG2431 181 LIAAFLLDL 189 (297)
T ss_pred HHHHHHHhc
Confidence 555555553
No 131
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=61.13 E-value=19 Score=39.21 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=69.6
Q ss_pred HHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHh-----hCCChHHHHHHHHHhhhhhH
Q 038269 306 LLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLM-----LGFHWPESVSLGLLLSAKGH 380 (792)
Q Consensus 306 ~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~-----~~~~~re~~~lg~~l~~kG~ 380 (792)
+.++++=|+.|.-+|..+|+.-+. .++.... +-..+-++-+.....+..+ .|++.+|+-.+|.+=+.-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl-anP~~~l----lGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLL-ANPRTLL----LGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh-hCHHHHH----HHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 346788889999999999997553 3443322 2233333333333222222 38999999999998888888
Q ss_pred HHHHHHHHhh-c-ccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhccc
Q 038269 381 FYIFLAIMGA-V-HNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKH 428 (792)
Q Consensus 381 v~l~l~~~~~-~-~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~ 428 (792)
.++.+.+..- + .+-|.-..|+-| -+.=++-||++|.+-.+++|.
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~ 251 (433)
T PRK15475 206 TAIYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERK 251 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhC
Confidence 8888776432 1 122333334333 233456799999887555443
No 132
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=61.13 E-value=19 Score=39.23 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=69.5
Q ss_pred HHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHh-----hCCChHHHHHHHHHhhhhhH
Q 038269 306 LLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLM-----LGFHWPESVSLGLLLSAKGH 380 (792)
Q Consensus 306 ~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~-----~~~~~re~~~lg~~l~~kG~ 380 (792)
+.++++=|+.|.-+|..+|+.-+. .++... ++-..+-++-+.....+..+ .|++.+|+-.+|.+=+.-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl-anP~~~----llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLL-ANPRTL----LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh-hCHHHH----HHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 346788889999999999997553 344332 22233333333333222222 38999999999998888888
Q ss_pred HHHHHHHHhh-c-ccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhccc
Q 038269 381 FYIFLAIMGA-V-HNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKH 428 (792)
Q Consensus 381 v~l~l~~~~~-~-~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~ 428 (792)
.++.+.+..- + .+-|.-..|+-| -+.=++-||++|.+-.+++|.
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~ 251 (433)
T PRK15476 206 TAIYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERK 251 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhC
Confidence 8888776422 1 122333334333 233456799999887555443
No 133
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=61.11 E-value=19 Score=39.22 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=69.4
Q ss_pred HHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHh-----hCCChHHHHHHHHHhhhhhH
Q 038269 306 LLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLM-----LGFHWPESVSLGLLLSAKGH 380 (792)
Q Consensus 306 ~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~-----~~~~~re~~~lg~~l~~kG~ 380 (792)
+.++++=|+.|.-+|..+|+.-+. .++... ++-..+-++-+.....+..+ .|++.+|+-.+|.+=+.-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl-anP~~~----llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLL-ANPRTL----LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh-hCHHHH----HHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 346788888999999999997553 344332 22233333333333222222 38999999999998888888
Q ss_pred HHHHHHHHhh-c-ccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhccc
Q 038269 381 FYIFLAIMGA-V-HNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKH 428 (792)
Q Consensus 381 v~l~l~~~~~-~-~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~ 428 (792)
.++.+.+..- + .+-|.-..|+-| -+.=++-||++|.+-.+++|.
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~ 251 (433)
T PRK15477 206 TAIYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERK 251 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhC
Confidence 8888776422 1 122333334333 233456799999887555443
No 134
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=61.06 E-value=32 Score=33.24 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=47.2
Q ss_pred cChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCcEEEEEEe-c
Q 038269 629 KDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKH-L 707 (792)
Q Consensus 629 ~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~y~e~~-v 707 (792)
+.|+|+|+.|+++++..+.+++++-+= +.+ -.++.+++...++ .-+++...+-- .
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G-~~~----------------------~~~~~l~~~l~~~-G~d~v~~~~~~~~ 70 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG-PAE----------------------EAAEALRKALAKY-GADKVYHIDDPAL 70 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE-TCC----------------------CHHHHHHHHHHST-TESEEEEEE-GGG
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe-cch----------------------hhHHHHhhhhhhc-CCcEEEEecCccc
Confidence 579999999999999999988888552 101 0233333332212 12344433322 1
Q ss_pred C--ChHHHHHHHHhhh--cCccEEEEecCC
Q 038269 708 A--NSSETFATLRSLE--GQYALIIVGRGE 733 (792)
Q Consensus 708 ~--~~~e~~~~i~~~~--~~~dL~iVGr~~ 733 (792)
. +.+....++.++. .++|+++.|.+.
T Consensus 71 ~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 71 AEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp TTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 1 2344666666663 359999999864
No 135
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=59.92 E-value=62 Score=31.94 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.4
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFL 655 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~ 655 (792)
||++.+.||.|.--++.++.+.++..+.++.++++-
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 588999999999999999999887777788888873
No 136
>COG0679 Predicted permeases [General function prediction only]
Probab=56.11 E-value=1.8e+02 Score=31.51 Aligned_cols=85 Identities=15% Similarity=0.233 Sum_probs=58.9
Q ss_pred cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHH-HH-HHHHH
Q 038269 51 MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYG-GM-LSTFI 128 (792)
Q Consensus 51 l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~-~~-l~p~~ 128 (792)
++.|.+++.+ .|+++...+.. +|....+..+.+++...-+-|+..|+.++....++...+....+.. -. +.|.+
T Consensus 166 ~~nP~i~a~i-~g~~~~~~~i~---lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~ 241 (311)
T COG0679 166 LTNPLIIALI-LGLLLNLLGIS---LPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLV 241 (311)
T ss_pred HhCcHHHHHH-HHHHHHHcCCC---CcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHH
Confidence 4567777664 56666654432 4555678899999999999999999999997777777777666665 33 44554
Q ss_pred HHHHHHHHhhcc
Q 038269 129 LGCSLTPFLHYS 140 (792)
Q Consensus 129 ~~~~~~~~l~~~ 140 (792)
...+...++.+
T Consensus 242 -~~~~~~~~~l~ 252 (311)
T COG0679 242 -ALLVAKLLGLS 252 (311)
T ss_pred -HHHHHHHcCCC
Confidence 44455566543
No 137
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=55.45 E-value=53 Score=35.38 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=70.5
Q ss_pred HHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCC------ChHHHHHHHHHhhhhh
Q 038269 306 LLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGF------HWPESVSLGLLLSAKG 379 (792)
Q Consensus 306 ~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~------~~re~~~lg~~l~~kG 379 (792)
+.++++=|+.|.-+|..+|+.-+. .++.. .++-..+-++- ..+++.+...|+ +.+|+-.+|.+=+.-|
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpll-anP~~----~llGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADG 133 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLL-ANPRT----LLLGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADG 133 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHH-hChHH----HHHHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCC
Confidence 456888899999999999997553 33432 22223333333 335556667788 7799999998877888
Q ss_pred HHHHHHHHHhh-c-ccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhcccC
Q 038269 380 HFYIFLAIMGA-V-HNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHA 429 (792)
Q Consensus 380 ~v~l~l~~~~~-~-~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~~ 429 (792)
-.++.+.+... + .+-+.-..|+-| -+.=++-||++|.+-.+++|..
T Consensus 134 Pt~If~s~~lap~Llg~IaVAAYsYM----aLvPiiqPpimklLttkkeR~I 181 (354)
T TIGR01109 134 PTAIYLSGKLAPELLAAIAVAAYSYM----ALVPIIQPPIMKALTSEKERKI 181 (354)
T ss_pred chhhhhHhhhhhHHHHHHHHHHHHHH----HHHhcccchHHHhhcChHHhcc
Confidence 88887765422 1 122222233322 2334567999999876554443
No 138
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=55.05 E-value=38 Score=36.35 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=26.7
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 654 (792)
+.++.|.||+|+--.|.++.+.-...+..+.++++
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~I 55 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHV 55 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEE
Confidence 45678999999999999998876543566677766
No 139
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=54.83 E-value=1.7e+02 Score=32.19 Aligned_cols=156 Identities=10% Similarity=0.049 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhhhCch--hhHH-HHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccc
Q 038269 257 LVLSLAFMVAVCSCSPFYGYS--PILS-AFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTL 333 (792)
Q Consensus 257 ~~~il~~~l~~~~~ae~~G~~--~~lg-afvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~ 333 (792)
....+.+.+..+++.+..|+. .++| +.++|.+..-.. ..-.+-..+. .+-.-+.=+.+|.++..+.+.. -.
T Consensus 11 w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~-~~l~~P~~l~----~~~q~ilG~~ig~~~t~s~l~~-l~ 84 (352)
T COG3180 11 WFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRG-LTLPLPRGLF----KAGQVILGIMIGASLTPSVLDT-LK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc-ccccCChHHH----HHHHHHHHHHHhhhcCHHHHHH-HH
Confidence 344445555667777777764 4677 555555544321 1111111111 1122233456677777655532 12
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhh
Q 038269 334 GTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVH 413 (792)
Q Consensus 334 ~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~ 413 (792)
..|....++.+..+..-.+..++..|+.+.|..+++. ...|-|.-++.... .|.|--...+--.=-+=+++.+..
T Consensus 85 ~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~---gs~PGgas~m~~iA--~d~gAd~~~VAl~Q~lRvl~Vvl~ 159 (352)
T COG3180 85 SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL---GSSPGGASAMVSIA--QDYGADLRLVALMQYLRVLFVVLL 159 (352)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH---hcCCchHHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHH
Confidence 3566666666677777777788888888777777643 45687777776655 444321111111111223334455
Q ss_pred hhHHHHHhhh
Q 038269 414 TPFVVQNIIG 423 (792)
Q Consensus 414 ~~~li~~l~~ 423 (792)
.|.+.++.+.
T Consensus 160 vplv~~~~~~ 169 (352)
T COG3180 160 APLVSRLFVG 169 (352)
T ss_pred HHHHHHHhcC
Confidence 6777777664
No 140
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=53.74 E-value=2.7e+02 Score=28.69 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhh
Q 038269 335 TWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHT 414 (792)
Q Consensus 335 ~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~ 414 (792)
.|..+..-++++.+.-+..++..++.+|.+. .+.. .+.+|..-.-+...+..+.|-..+-+-..++++-++-..++
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 4444445555566666677788888889873 2333 46799988888888887777655555555555666666677
Q ss_pred hHHHHHh
Q 038269 415 PFVVQNI 421 (792)
Q Consensus 415 ~~li~~l 421 (792)
|++.|++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 7777764
No 141
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=53.65 E-value=2.4e+02 Score=29.19 Aligned_cols=70 Identities=14% Similarity=0.049 Sum_probs=46.2
Q ss_pred HHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH-HHhhccHHHHHHHHHhcCC
Q 038269 96 MFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSF-TLAGSGSHILTRVITNLKI 172 (792)
Q Consensus 96 lF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~-~ls~Ts~~vv~~iL~el~l 172 (792)
-|..=+--+.+.+||+++..+.--..|.++.+..+..++.+++.+. .+..+. -=|+| .|+...+-++++-
T Consensus 77 ALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~------~~~~Sl~pKSVT-tPIAm~is~~iGG 147 (232)
T PRK04288 77 AFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN------AVMASMLPQAAT-TAIALPVSAGIGG 147 (232)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH------HHHHHHhhHhhh-HHHHHHHHHHhCC
Confidence 3445555678899999988877777777778877778887886532 122222 23444 4777777777763
No 142
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=51.36 E-value=86 Score=37.02 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=47.0
Q ss_pred HhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHh---------hCCChHHHHHHHHHhhhh
Q 038269 308 STLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLM---------LGFHWPESVSLGLLLSAK 378 (792)
Q Consensus 308 ~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~---------~~~~~re~~~lg~~l~~k 378 (792)
..+++|....-.|+.+|...+. .++..++.+.+++++.-.+.+-...++ .+++|.+++.+|.++++-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~----~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaT 144 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFF----ENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAV 144 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCC
Confidence 4567888888889999987664 234444444444333333322222221 256999999999999998
Q ss_pred hHHHHHH
Q 038269 379 GHFYIFL 385 (792)
Q Consensus 379 G~v~l~l 385 (792)
.-+...-
T Consensus 145 DPVAVla 151 (559)
T TIGR00840 145 DPVAVLA 151 (559)
T ss_pred chHHHHH
Confidence 8776654
No 143
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=51.04 E-value=1.2e+02 Score=32.89 Aligned_cols=139 Identities=15% Similarity=0.224 Sum_probs=67.6
Q ss_pred hHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHH
Q 038269 279 ILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICG 358 (792)
Q Consensus 279 ~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~ 358 (792)
++.+.++|...|.-+.....+. .|.. ......+.|...|++++.+.+. .....|...+......++.=.+..+...
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~-~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELK-AALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888887443333332 1222 2334666777789999987664 2345565555444455555455555555
Q ss_pred HhhCCChHHHHHHHHHhhhh--hHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhh
Q 038269 359 LMLGFHWPESVSLGLLLSAK--GHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNII 422 (792)
Q Consensus 359 ~~~~~~~re~~~lg~~l~~k--G~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~ 422 (792)
+..+....+.+..|+...+- -+++-.++......|-.....+ ..+++.++..+++|.++.++.
T Consensus 83 ~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~-~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 83 RLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALF-NAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHH-HHHHHhhhhHhHHHHHHHHHh
Confidence 54432222335555533221 1122222222222222221222 223455555667777776654
No 144
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=50.07 E-value=71 Score=34.59 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcc--ChhhhhcCCcccchHhHHHHHHHHH---HHHHHHHHhhcccc
Q 038269 91 GMICYMFVLGLEM--DPYVIFKPPTRDAIVAYGGMLSTFI---LGCSLTPFLHYSTH 142 (792)
Q Consensus 91 gl~~llF~~Gle~--d~~~l~~~~~~~~~ia~~~~l~p~~---~~~~~~~~l~~~~~ 142 (792)
-+.+||...|++- .++++|+.+. .+...+++.|.+ +|..++++++.+.+
T Consensus 212 ~L~lFLLeMGl~A~~rL~~l~~~g~---~li~Fgi~~Pli~a~ig~~lg~~~gls~G 265 (327)
T PF05982_consen 212 VLCLFLLEMGLVAARRLRDLRKVGW---FLIAFGILMPLINALIGIGLGWLLGLSPG 265 (327)
T ss_pred HHHHHHHHhhHHHHHhhHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3557777777754 4455555554 444555666665 45555666665543
No 145
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=49.43 E-value=3.8e+02 Score=29.21 Aligned_cols=84 Identities=20% Similarity=0.119 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccc---cccccHHHHHHHHHHHHH------HHHHHHhhcc
Q 038269 33 GLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNG---FELEMIQTLNYIVEFGMI------CYMFVLGLEM 103 (792)
Q Consensus 33 ~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~l---f~~~~~~~l~~l~~lgl~------~llF~~Gle~ 103 (792)
++.++.+...+.+.-.+|---|-+.-.|-.|+++.+.+..... ........+..+-+.|+. ++.+-+|--+
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmt 83 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMT 83 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHH
Confidence 4556666666677777888899999999999999986632100 110122334444444332 3445578889
Q ss_pred ChhhhhcCCcccc
Q 038269 104 DPYVIFKPPTRDA 116 (792)
Q Consensus 104 d~~~l~~~~~~~~ 116 (792)
|+.-+..+.|..+
T Consensus 84 DFgpllanP~~~l 96 (360)
T PF03977_consen 84 DFGPLLANPKTLL 96 (360)
T ss_pred hhHHHHhCHHHHH
Confidence 9999998888754
No 146
>PRK10711 hypothetical protein; Provisional
Probab=48.56 E-value=1.3e+02 Score=30.98 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhh
Q 038269 335 TWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHT 414 (792)
Q Consensus 335 ~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~ 414 (792)
.|..+++-++++.+.-++++++.++.+|.+..-. ..|.+|..-.-+...+..+.|-+..-+-..++++-++-.+++
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~----~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPEIA----ASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666667777888888888865432 346799998888888888777665555555556666666677
Q ss_pred hHHHHHh
Q 038269 415 PFVVQNI 421 (792)
Q Consensus 415 ~~li~~l 421 (792)
|++.|++
T Consensus 163 ~~llk~~ 169 (231)
T PRK10711 163 HTLLNAM 169 (231)
T ss_pred HHHHHHc
Confidence 7777764
No 147
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=47.74 E-value=3.7e+02 Score=28.56 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=29.2
Q ss_pred CCCccCCCcccccccchHHHHHHHHHHHHHHHHHHHhHcccCCC-------hhHHHHHHHhhcc
Q 038269 11 SPAQKCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQP-------RITSDIVIGLFLG 67 (792)
Q Consensus 11 ~~~~~~~~~~~~~~~~lp~~l~~i~lil~~~~~~~~l~~rl~~P-------~iv~~IlaGillG 67 (792)
+++..-..||| ..+.....+ +..++...+..++||++++ ..+.+++.|-.+.
T Consensus 11 i~pi~~~~GYn----~Vnt~~Yai-iL~~~v~~v~~ll~~l~i~id~~f~~al~P~m~~G~~lR 69 (273)
T PF01889_consen 11 IDPIYYGPGYN----PVNTLTYAI-ILGVAVIGVYKLLKRLRIKIDERFVLALIPFMLFGGALR 69 (273)
T ss_pred ccccccCCCCc----HHHHHHHHH-HHHHHHHHHHHHHHHcCCCCchhhhhhhhhHHHHHHHHH
Confidence 34555566777 222222222 2233334557789998877 4566777776655
No 148
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=46.83 E-value=91 Score=33.39 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=51.5
Q ss_pred hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHH
Q 038269 56 ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTP 135 (792)
Q Consensus 56 iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~ 135 (792)
.+-.++.|+++|+..- +-.+.+..-..+-..|+-|..|-.+|++.+.+.+-.-+.+++..++++....+....
T Consensus 174 ~ilPlliG~ilGNLD~-------~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr 246 (314)
T TIGR00793 174 AVLPFLVGFALGNLDP-------ELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADK 246 (314)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHH
Confidence 3445779999998531 111222222222334788999999999999999888888888777777777776666
Q ss_pred Hhh
Q 038269 136 FLH 138 (792)
Q Consensus 136 ~l~ 138 (792)
+++
T Consensus 247 ~~~ 249 (314)
T TIGR00793 247 FIG 249 (314)
T ss_pred Hhc
Confidence 663
No 149
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=46.46 E-value=4.2e+02 Score=28.81 Aligned_cols=79 Identities=16% Similarity=0.067 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccc-cccccccHHHHHHHHHHHHH------HHHHHHhhccChhhh
Q 038269 36 LAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIR-NGFELEMIQTLNYIVEFGMI------CYMFVLGLEMDPYVI 108 (792)
Q Consensus 36 lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~-~lf~~~~~~~l~~l~~lgl~------~llF~~Gle~d~~~l 108 (792)
++++...+.+.-.+|---|-+.-.|-.|+++.+.+... .... ....++.+-++|+. ++.+-+|-=+|+.-+
T Consensus 5 Mi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~--~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpl 82 (354)
T TIGR01109 5 MLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTA--EGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPL 82 (354)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcccccccc--CCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHH
Confidence 34444455566667777899999999999999875321 0111 12334433333332 234447888999999
Q ss_pred hcCCcccc
Q 038269 109 FKPPTRDA 116 (792)
Q Consensus 109 ~~~~~~~~ 116 (792)
..+.|..+
T Consensus 83 lanP~~~l 90 (354)
T TIGR01109 83 LANPRTLL 90 (354)
T ss_pred HhChHHHH
Confidence 88886444
No 150
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=46.37 E-value=77 Score=31.18 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=30.9
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLL 656 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~ 656 (792)
+|+|=+.||+|.--.|.+...+.++.+.+++++++-.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh 37 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDH 37 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 5788899999999999999999999999999999854
No 151
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=45.98 E-value=42 Score=32.34 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=53.5
Q ss_pred hhHHHHHHhhhcCCCC---cchHHHHHHHhHHHHhhhhHHHHHhhccccccccccc-ccchhHHHHHHHHHHHHhhhHHH
Q 038269 278 PILSAFMAGIFFPSEG---RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEA-DTLGTWGRFFFLIVISTAGKVVG 353 (792)
Q Consensus 278 ~~lgafvaGl~l~~~~---~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~-~~~~~~~~~~~li~~~~~~K~l~ 353 (792)
..-|++++|+++.+.. |..-.+-.....+..++-+-+|...+|++.-.+.+.. .....+....+..++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3457778888777643 2223333445556678888999999999986532321 11111122222233333444556
Q ss_pred HHHHHHhhCCChHHHHHHHHH
Q 038269 354 TVICGLMLGFHWPESVSLGLL 374 (792)
Q Consensus 354 ~~l~~~~~~~~~re~~~lg~~ 374 (792)
.++..+++|+++-. ..|.+
T Consensus 103 ~~~~~~~~~~~~~~--~~G~~ 121 (154)
T TIGR01625 103 AVALIKLLRINYAL--TAGML 121 (154)
T ss_pred HHHHHHHhCCCHHH--HHHHH
Confidence 66666788998754 44443
No 152
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.66 E-value=43 Score=36.38 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCcEEEEEEec---CChHHHHHHHHhhhc-----CccEEEEecCCCC
Q 038269 685 ECFAEFYERQVAEGHVAYAEKHL---ANSSETFATLRSLEG-----QYALIIVGRGERA 735 (792)
Q Consensus 685 ~~l~e~~~~~~~~~~v~y~e~~v---~~~~e~~~~i~~~~~-----~~dL~iVGr~~~~ 735 (792)
++++...+++ ..-++.+-...| ....+++++|+..+. +||++|++||+|.
T Consensus 30 D~~~~~~~r~-~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 30 DFLRTLKRRN-PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHhC-CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 4555553432 223466666666 445779999999863 5899999999985
No 153
>COG2985 Predicted permease [General function prediction only]
Probab=44.19 E-value=60 Score=36.89 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=60.9
Q ss_pred hhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---hcCCcccchHhHHHHHHHHHHHH
Q 038269 55 RITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---FKPPTRDAIVAYGGMLSTFILGC 131 (792)
Q Consensus 55 ~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~l~p~~~~~ 131 (792)
-.-|.+++|++||..+-...++-.-.......+.++|+.+||=-+|++---+.. -..+-.....+..-.++|.+.+.
T Consensus 397 ~aGGpLivaLiLG~ig~iGpl~w~mP~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~ 476 (544)
T COG2985 397 NAGGPLIVALILGFIGAIGPLTWFMPPGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVF 476 (544)
T ss_pred ccccHHHHHHHHHHhcccCceEEEcChhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHH
Confidence 345778889998865433222211235677788999998766666665433322 22333333444444456777777
Q ss_pred HHHHHh-hcccchhHHHHHHHH-HHHhhccHHHHHHHHHhcC
Q 038269 132 SLTPFL-HYSTHRKIVVAITLS-FTLAGSGSHILTRVITNLK 171 (792)
Q Consensus 132 ~~~~~l-~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~el~ 171 (792)
+++.++ +.++ ....| ++=+.|++|... ...|..
T Consensus 477 llg~~v~kmn~------~~l~G~laGs~T~ppaLa-~and~~ 511 (544)
T COG2985 477 LLGRYVLKMNW------LLLCGALAGSMTDPPALA-FANDAA 511 (544)
T ss_pred HHHHHHHhccH------HHHhhHHhcCCCChHHHH-HHhhcc
Confidence 766554 3221 33444 444668877655 344443
No 154
>PRK09903 putative transporter YfdV; Provisional
Probab=44.16 E-value=3.9e+02 Score=28.82 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=56.3
Q ss_pred hHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHH-HH
Q 038269 296 SKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLG-LL 374 (792)
Q Consensus 296 ~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg-~~ 374 (792)
.+.+.+-++.+ .+...|+-...+|+++....... +...| ...+.-.+.-++.++.....++++..+....= ..
T Consensus 193 P~~i~~~l~~l-g~~~~PlaL~~iG~~L~~~~~~~-~~~~~----~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~a 266 (314)
T PRK09903 193 PAAWDPTFNLI-AKANSGVAVFAAGLTLAAHKFEF-SAEIA----YNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAG 266 (314)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccc-cHHHH----HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34556666665 78889999999999986543321 11122 22223333345555555566677643332211 11
Q ss_pred hhhhhHHHHHHHHHhhcccccChhhHHHHH-HHHHHHHhhhhHHH
Q 038269 375 LSAKGHFYIFLAIMGAVHNYITHTTAASLV-IMIFFTIVHTPFVV 418 (792)
Q Consensus 375 l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv-~~~vl~~~~~~~li 418 (792)
..|-+....+++. +.|. +++.-+..+ ++++++.++.|..+
T Consensus 267 a~P~a~~~~i~A~---~y~~-~~~~aa~~v~~sTlls~iTlpl~~ 307 (314)
T PRK09903 267 ALPPAFSGIIIAS---RFNV-YTRTGTASLAVSVLGFVVTAPLWI 307 (314)
T ss_pred cccHHHHHHHHHH---HHcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555554443 3333 344444444 44455444445444
No 155
>PF14563 DUF4444: Domain of unknown function (DUF4444); PDB: 3BFM_A.
Probab=43.81 E-value=3.3 Score=29.93 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=14.4
Q ss_pred EeeeccCCCCCCcccccCCC
Q 038269 773 IKQHDFKGELDGLDEDFSVM 792 (792)
Q Consensus 773 vqq~~~~~~~~~~~~~~~~~ 792 (792)
+|+....|.+.|.||||-++
T Consensus 5 ~t~~g~tGtFlGvDE~FGmL 24 (42)
T PF14563_consen 5 VTVAGLTGTFLGVDEDFGML 24 (42)
T ss_dssp EEETTEEEEEEEE-TT--EE
T ss_pred eEEcCcceeEEeeccccceE
Confidence 57888899999999999653
No 156
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=43.78 E-value=74 Score=34.21 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=50.7
Q ss_pred hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHH
Q 038269 56 ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTP 135 (792)
Q Consensus 56 iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~ 135 (792)
.+-.++.|+++|+..- +-.+.+..-..+-..|+-|-.|-.+|+..+.+.+-.-+.+++..++++....+....
T Consensus 174 ~llP~iiG~iLGNLD~-------~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr 246 (314)
T PF03812_consen 174 ALLPIIIGMILGNLDP-------DFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADR 246 (314)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHH
Confidence 3445779999998521 112222222223334788999999999999999988888888777766666666665
Q ss_pred Hh
Q 038269 136 FL 137 (792)
Q Consensus 136 ~l 137 (792)
++
T Consensus 247 ~i 248 (314)
T PF03812_consen 247 LI 248 (314)
T ss_pred HH
Confidence 54
No 157
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=43.46 E-value=62 Score=35.07 Aligned_cols=36 Identities=36% Similarity=0.469 Sum_probs=29.8
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCe-EEEEEEe
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAV-KLTVIRF 654 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v-~ltv~r~ 654 (792)
.+|||-|.||+|.-.-|.++.+.++.-+- ++.|++.
T Consensus 28 ~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi 64 (407)
T COG3969 28 PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFI 64 (407)
T ss_pred CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEE
Confidence 59999999999999999988888866555 6777754
No 158
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=42.96 E-value=75 Score=34.28 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=28.2
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 654 (792)
.++++.|.||+|.--.|.++++.-......+.++++
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~i 63 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHV 63 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEE
Confidence 378899999999999999998875543556667765
No 159
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=42.49 E-value=99 Score=37.60 Aligned_cols=114 Identities=15% Similarity=0.229 Sum_probs=70.8
Q ss_pred ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCC
Q 038269 618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAE 697 (792)
Q Consensus 618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~ 697 (792)
..||+|-.-|++....-+..|.|||+.-+...|++++...+.... .++..+.+++ .++ ..+.. +
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~------------~~~~~~~l~~-~~~-Lae~l--G 311 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL------------SEKEARRLHE-NLR-LAEEL--G 311 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc------------cHHHHHHHHH-HHH-HHHHh--C
Confidence 468999999999999999999999999999999999865432100 0111112221 111 11211 2
Q ss_pred CcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcC
Q 038269 698 GHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGS 762 (792)
Q Consensus 698 ~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~ 762 (792)
.. .++-.+.|+..+|-+.++ +..-+|+||.+.. -|.+.-+ |.+.|-|+..
T Consensus 312 ae-----~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~ 363 (890)
T COG2205 312 AE-----IVTLYGGDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLARE 363 (890)
T ss_pred Ce-----EEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhc
Confidence 21 122234566666666644 3678999998763 5644333 7777777765
No 160
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=41.95 E-value=1.7e+02 Score=33.02 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=55.5
Q ss_pred ceeEEEEeccCcChHHHHHHHHHHh-cCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269 618 SLNVAVIFIGGKDDREALAYASRVA-RHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA 696 (792)
Q Consensus 618 ~~~v~v~f~GG~ddreAL~~a~rma-~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~ 696 (792)
.-+|||+|.||-|----..++.+.. +|+.+.|-=+-|-.++. ..+.+-+|++....-++|++... .
T Consensus 250 ~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~------------~~~~~~PDRktgr~g~~eL~s~~-P 316 (520)
T KOG0573|consen 250 ESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEG------------SKEQNVPDRKTGRRGLEELQSLY-P 316 (520)
T ss_pred cCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCc------------ccccCCccHHHHHHHHHHHHHhC-C
Confidence 3589999999999988888888776 66777765555532211 01112378888899999995543 2
Q ss_pred CCcEEEEEEecCChHHHHHH
Q 038269 697 EGHVAYAEKHLANSSETFAT 716 (792)
Q Consensus 697 ~~~v~y~e~~v~~~~e~~~~ 716 (792)
+....+.|.-|. .+|...+
T Consensus 317 ~R~~nlV~vnV~-~~El~~~ 335 (520)
T KOG0573|consen 317 KRSWNLVEVNVT-YEELQKA 335 (520)
T ss_pred cceEEEEeccCC-HHHHHHH
Confidence 345677777663 3444333
No 161
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=41.86 E-value=1.8e+02 Score=29.74 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhh
Q 038269 335 TWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHT 414 (792)
Q Consensus 335 ~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~ 414 (792)
.|..++.-++++.+.-++.++..++.+|.+..- . ..+.+|..-.-+...+..+.|-...-+-..++++-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~--~--~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPEI--I--LSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH--H--HHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 455555556666667777778888888886533 2 345799988888777777777665555555555666666667
Q ss_pred hHHHHHh
Q 038269 415 PFVVQNI 421 (792)
Q Consensus 415 ~~li~~l 421 (792)
|++.|++
T Consensus 152 ~~llk~~ 158 (215)
T PF04172_consen 152 PPLLKLL 158 (215)
T ss_pred HHHHhHc
Confidence 7777763
No 162
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=41.80 E-value=30 Score=29.23 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=35.0
Q ss_pred ChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchh-HHHHHHhhhCCCce
Q 038269 544 GMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFR-YVNRKLLRNATCSV 597 (792)
Q Consensus 544 ~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~-~~n~~vl~~apCsV 597 (792)
.+++-+.+.|++.+++.|+.|.|.....+... .+ ....++.++++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCce
Confidence 78999999999999999999998554332111 12 33357788888875
No 163
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=39.33 E-value=37 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.0
Q ss_pred EEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 038269 621 VAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654 (792)
Q Consensus 621 v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 654 (792)
|++++-||+|+..++.++.+.+ ..+.+++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 4689999999999999999986 33556666654
No 164
>COG4827 Predicted transporter [General function prediction only]
Probab=39.23 E-value=2.7e+02 Score=28.09 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhccChhhhhcC--CcccchHhHHHHHHHHHHHHH
Q 038269 87 IVEFGMICYMFVLGLEMDPYVIFKP--PTRDAIVAYGGMLSTFILGCS 132 (792)
Q Consensus 87 l~~lgl~~llF~~Gle~d~~~l~~~--~~~~~~ia~~~~l~p~~~~~~ 132 (792)
.-..|..+.+|..|+++-+..=..+ .|++..++....+...+++.+
T Consensus 10 ~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~gl 57 (239)
T COG4827 10 TYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGGL 57 (239)
T ss_pred HHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3367888888888888776543322 244555555444443333433
No 165
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=38.80 E-value=1.7e+02 Score=27.73 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=24.5
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 654 (792)
+|++-|.||+|.--.|.++.+...+. -++.++++
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~ 34 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFL 34 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEe
Confidence 57899999999988888887765432 34555544
No 166
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=38.20 E-value=75 Score=34.38 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.8
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 654 (792)
++++.|.||+|+--.|.++.+........+.++++
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~V 73 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHV 73 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEe
Confidence 56789999999999999998886544455666765
No 167
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=36.96 E-value=2.6e+02 Score=30.89 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=66.6
Q ss_pred hhhHHHHHHhhhcCCCCcch-----HHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhH
Q 038269 277 SPILSAFMAGIFFPSEGRMS-----KWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKV 351 (792)
Q Consensus 277 ~~~lgafvaGl~l~~~~~~~-----~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~ 351 (792)
++.+=+.++|+++.-.++.. ..+.+-++.+ .....|+-.+.+|..+....... ...+......+++-++.-+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~--~~~~~~~~~~~~~rlii~P 320 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKS--ALGWKPSIIAVLVRLIILP 320 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCccc--chhhHHHHHHHHHHHHHHH
Confidence 44444555555554433222 4555566665 78889999999999886432211 1122323333555555556
Q ss_pred HHHHHHHHhhCCChHHHHHHHH-HhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhh
Q 038269 352 VGTVICGLMLGFHWPESVSLGL-LLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTP 415 (792)
Q Consensus 352 l~~~l~~~~~~~~~re~~~lg~-~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~ 415 (792)
+.++...+..+++......+-+ ...|-+....+++. ..+.-.++.-..+..+.++..++.|
T Consensus 321 ~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~---~~~~~~~~~s~~~~~~~~~~~~~~~ 382 (385)
T PF03547_consen 321 LIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIAS---LYGLDEEEASSIVFWSTLLSIPTLP 382 (385)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777765443222211 12344444444433 2333334444444444444444433
No 168
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=36.83 E-value=1.6e+02 Score=31.10 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=49.2
Q ss_pred HHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccc-cChhhHHHHHHHHHHHHhhhhHHHHHhhh
Q 038269 345 ISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNY-ITHTTAASLVIMIFFTIVHTPFVVQNIIG 423 (792)
Q Consensus 345 ~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~-i~~~~~~~lv~~~vl~~~~~~~li~~l~~ 423 (792)
.-=+.|-..|..++++.|++.+++...+++|+.--.....++......+. .+......+.+..+++-+++=..++++.+
T Consensus 159 ~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~ 238 (259)
T PF02673_consen 159 IPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLR 238 (259)
T ss_pred CCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456999999999999999999999999988544444444433321111 33334444444444444444445555554
Q ss_pred hhc
Q 038269 424 RAR 426 (792)
Q Consensus 424 ~~~ 426 (792)
..+
T Consensus 239 ~~~ 241 (259)
T PF02673_consen 239 FLK 241 (259)
T ss_pred HHh
Confidence 433
No 169
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=36.28 E-value=3.6e+02 Score=27.59 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCC
Q 038269 97 FVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKI 172 (792)
Q Consensus 97 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~l 172 (792)
+-.-+--+.+.+||+++..+.--..|.++.+..+..++++++.+. .+..+.+-=+...|+...+-++++-
T Consensus 62 LAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~------~~~~Sl~pkSVTtpiAi~is~~iGG 131 (215)
T PF04172_consen 62 LAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSP------EIILSLAPKSVTTPIAIEISEQIGG 131 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH------HHHHHHHHHHhhHHHHHHHHHHhCC
Confidence 344445577889999888877667777777777777777776532 1233333323334777777777763
No 170
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=35.24 E-value=1.7e+02 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.099 Sum_probs=27.5
Q ss_pred EEeccCcChHHHHHHHHHHhc-CCCeEEEEEEe
Q 038269 623 VIFIGGKDDREALAYASRVAR-HPAVKLTVIRF 654 (792)
Q Consensus 623 v~f~GG~ddreAL~~a~rma~-~~~v~ltv~r~ 654 (792)
++..=.+.|+-|++.|.|+.+ ..+.++|++.+
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~ 63 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTM 63 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEe
Confidence 345557899999999999999 79999999976
No 171
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=34.98 E-value=4.6e+02 Score=29.64 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=62.5
Q ss_pred HcccCCChhHHHHHHHhhccCccccccccccc----cHHHHHHHHHHHHHHHHHHHhhc-cChhhhhcCCcccch-HhHH
Q 038269 48 LKPMHQPRITSDIVIGLFLGNIQPIRNGFELE----MIQTLNYIVEFGMICYMFVLGLE-MDPYVIFKPPTRDAI-VAYG 121 (792)
Q Consensus 48 ~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~----~~~~l~~l~~lgl~~llF~~Gle-~d~~~l~~~~~~~~~-ia~~ 121 (792)
.+-+++|..+..|+.=+++--.+. .|.+ ..+..+.+..--...+|+-+|+. +|++++.+....... +.+.
T Consensus 266 ~~~i~ih~~a~mIi~~~i~K~~~l----vP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~ 341 (414)
T PF03390_consen 266 SKLIGIHAYAWMIILVAIVKAFGL----VPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLA 341 (414)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHH
Confidence 334599999999888777664443 3422 23344455555555688999998 999999887754433 3333
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhh
Q 038269 122 GMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAG 157 (792)
Q Consensus 122 ~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~ 157 (792)
.++...+.++.+++++++.+ ...++.-|.+++.
T Consensus 342 ~Vl~~~~~a~~vG~l~g~YP---vEsAItaGLC~an 374 (414)
T PF03390_consen 342 TVLGAVIGAFLVGKLVGFYP---VESAITAGLCMAN 374 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCh---HHHHHHhhhcccC
Confidence 33334444555566776532 2345666656655
No 172
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=34.69 E-value=3.1e+02 Score=33.83 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHH--HHHHHH
Q 038269 90 FGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSH--ILTRVI 167 (792)
Q Consensus 90 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~--vv~~iL 167 (792)
+-+-++....|++.|...+.+ +.............-++.+.+.+.+++.+. ..++.+|.+++.=..- ++...-
T Consensus 314 ~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~----~~~l~l~~lm~~kgl~el~~~~~~ 388 (769)
T KOG1650|consen 314 LLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPL----RDSLALGLLMSTKGLVELIVLNTG 388 (769)
T ss_pred HHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCch----hHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444456677899999999988 211111111222223333444444444332 3367777777764322 233344
Q ss_pred HhcCCCCCc
Q 038269 168 TNLKIGKSD 176 (792)
Q Consensus 168 ~el~ll~s~ 176 (792)
.|.|..+.+
T Consensus 389 ~~~~~~~~~ 397 (769)
T KOG1650|consen 389 LDRKILSDE 397 (769)
T ss_pred hhcCCcccc
Confidence 566666555
No 173
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=34.69 E-value=6.1e+02 Score=27.30 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=74.8
Q ss_pred hhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHH
Q 038269 277 SPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTV 355 (792)
Q Consensus 277 ~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~ 355 (792)
++.+=|.++|+++.-.+ +....+.+-++.+ .....|+-.+.+|+.++..... ..+.......++-++.-++.++
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~----~~~~~~~~~~~~klil~P~i~~ 256 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIK----LGVRDAILALIVRFLVQPAVMA 256 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhc----cChHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665321 2344556666665 7888999999999998865442 1233344445555555556666
Q ss_pred HHHHhhCCChHH--HHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269 356 ICGLMLGFHWPE--SVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ 419 (792)
Q Consensus 356 l~~~~~~~~~re--~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~ 419 (792)
......+.+..+ ...+-. ..|-+....+++. +.|.-.+..-+.+.++++++.++.|..+.
T Consensus 257 ~~~~~~~l~~~~~~~~vl~a-a~P~a~~~~i~A~---~y~~~~~~aa~~v~~sT~ls~~tlp~~~~ 318 (321)
T TIGR00946 257 GISKLIGLRGLELSVAILQA-ALPGGAVAAVLAT---EYEVDVELASTAVTLSTVLSLISLPLFII 318 (321)
T ss_pred HHHHHhCCChHHHHHHHHHH-cCChhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776533 222222 2344444444433 33433344455555666666555565543
No 174
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=33.08 E-value=2.5e+02 Score=27.34 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=30.4
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFL 655 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~ 655 (792)
+|++-+.||.|.--++.++.+...+.+.++.++++-
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id 36 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVD 36 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 578999999999999999998887656778888773
No 175
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.02 E-value=2.1e+02 Score=23.58 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHH
Q 038269 218 IKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLV 258 (792)
Q Consensus 218 l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~ 258 (792)
++..+++++.++.++|+.|..+..-.+.+| |..|-.+-
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NP---pine~~iR 45 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNP---PINEEMIR 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCHHHHH
Confidence 344444555566677888888777777666 34554333
No 176
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=32.80 E-value=1e+02 Score=28.99 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=46.3
Q ss_pred CChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhC-CCceEEEecCCC
Q 038269 543 SGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNA-TCSVGILVDRGF 605 (792)
Q Consensus 543 ~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~a-pCsVgIlVdrg~ 605 (792)
....+.+.+++++++++.+++|+-.+ .||+........+.+-+++-++. ++.| .++|--+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLN--MDGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBB--CTSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcc--cCCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 67899999999999999999998644 35665444556777777887876 7887 7888654
No 177
>COG3371 Predicted membrane protein [Function unknown]
Probab=32.08 E-value=1.9e+02 Score=28.54 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=43.5
Q ss_pred ccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchH
Q 038269 50 PMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIV 118 (792)
Q Consensus 50 rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i 118 (792)
|.+-+.-.-+++.|+.+.-.+ +||.+. .-..+......+++|.+.+-+.....+++.+....+
T Consensus 73 k~~~~g~~ll~is~lfLaLVG----VFpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~~ 135 (181)
T COG3371 73 KIENYGGALLIISGLFLALVG----VFPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLI 135 (181)
T ss_pred HhhhcchHHHHHHHHHHHhee----eCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 566666667788888887665 355222 445667777788899999988888877755544433
No 178
>PRK10711 hypothetical protein; Provisional
Probab=32.03 E-value=5.5e+02 Score=26.58 Aligned_cols=89 Identities=10% Similarity=0.046 Sum_probs=52.4
Q ss_pred HHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHHhcCCC
Q 038269 95 YMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVITNLKIG 173 (792)
Q Consensus 95 llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~el~ll 173 (792)
.-|..=+--+.+.+||+++....--..|.++.+..+..++.+++.+. .+..+ +-=|+|. |+...+-++++-.
T Consensus 71 VALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~------~~~~Sl~pkSVTt-PIAm~is~~iGG~ 143 (231)
T PRK10711 71 VALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATP------EIAASILPKSVTT-PIAMAVGGSIGGI 143 (231)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH------HHHHHHhhhhhhH-HHHHHHHHHhCCc
Confidence 33445555678889999888776666777777777777777776532 12222 2334444 6777777776633
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 038269 174 KSDIGKLGMAAGIHSDMITML 194 (792)
Q Consensus 174 ~s~~g~l~l~~a~i~Di~~~~ 194 (792)
+ .++....+++-+++.+
T Consensus 144 ~----sLta~~ViitGi~Ga~ 160 (231)
T PRK10711 144 P----AISAVCVIFVGILGAV 160 (231)
T ss_pred H----HHHHHHHHHHHHHHHH
Confidence 2 3333344444444433
No 179
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=31.26 E-value=2.5e+02 Score=29.75 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 038269 348 AGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA 425 (792)
Q Consensus 348 ~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~ 425 (792)
+.|-.+|...+.+.|.+.+++.-.++.++.--.+....+.........+......+.+..+..-+++=..++++.+--
T Consensus 167 ~SRSGaTI~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~i 244 (270)
T COG1968 167 TSRSGATISGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFI 244 (270)
T ss_pred CCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888999999999999999999998877665555555554443333333333333333333333334555555533
No 180
>COG3748 Predicted membrane protein [Function unknown]
Probab=30.98 E-value=3.5e+02 Score=29.26 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=25.7
Q ss_pred HhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhh
Q 038269 308 STLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGK 350 (792)
Q Consensus 308 ~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K 350 (792)
+-+-+|+.|+.+-=...+.. ....+|..+.++.+.++..|
T Consensus 226 nylTLPVlF~MlSNHyp~~~---gt~fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAF---GTQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCcccc---cCchhHHHHHHHHHHHHHHH
Confidence 56778999988766665432 23457776666666655555
No 181
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=29.91 E-value=6.6e+02 Score=29.75 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=15.0
Q ss_pred HHHhhhhCchhhHHHHHHhhhcCC
Q 038269 268 CSCSPFYGYSPILSAFMAGIFFPS 291 (792)
Q Consensus 268 ~~~ae~~G~~~~lgafvaGl~l~~ 291 (792)
++++... -++.+|+.++|++..-
T Consensus 306 g~~a~~~-~~GFlG~Ilag~lagy 328 (563)
T PRK10712 306 GMLAVST-GSGFIGGIIAGFLAGY 328 (563)
T ss_pred HHHHhcC-CchHHHHHHHHHHHHH
Confidence 3444333 3788888888887764
No 182
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=29.38 E-value=2.7e+02 Score=29.50 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHH
Q 038269 339 FFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIM 388 (792)
Q Consensus 339 ~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~ 388 (792)
+..+.++-=+.|-..|..++++.|++.+++...+++|+.--.+...++..
T Consensus 157 ~Q~lAliPGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~ 206 (268)
T PRK00281 157 AQCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDL 206 (268)
T ss_pred HHHHHhCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344457999999999999999999999999998766555555444
No 183
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=29.36 E-value=5.1e+02 Score=28.92 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=51.1
Q ss_pred HhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCC-hHHHHHH-HHHh--hhh
Q 038269 303 VNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFH-WPESVSL-GLLL--SAK 378 (792)
Q Consensus 303 l~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~-~re~~~l-g~~l--~~k 378 (792)
+.+.++..++|+-..+.=++.|++.+.... ...+...+++.++-.+++.+....++.. -.|...+ |.+. -.-
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g----~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiG 127 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRLG----GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIG 127 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccC
Confidence 334456666776666666788887663222 2334445556666666776666555543 2233222 2222 234
Q ss_pred hHHHHHHHHHhhcccccChhhHHHHHH
Q 038269 379 GHFYIFLAIMGAVHNYITHTTAASLVI 405 (792)
Q Consensus 379 G~v~l~l~~~~~~~~~i~~~~~~~lv~ 405 (792)
|.+-++.....++ .+++.++..+.
T Consensus 128 Gs~N~~Av~~al~---~~~~~~~a~~a 151 (378)
T PF05684_consen 128 GSVNFVAVAEALG---VSDSLFAAALA 151 (378)
T ss_pred chhHHHHHHHHHC---CCHHHHHHHHH
Confidence 6666666655554 34566655543
No 184
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.06 E-value=7.6e+02 Score=26.68 Aligned_cols=57 Identities=11% Similarity=0.227 Sum_probs=28.8
Q ss_pred cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCC
Q 038269 51 MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPP 112 (792)
Q Consensus 51 l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 112 (792)
+|...-.|-..+|+++..+..-+ +..+..-.+.+.-.++|.-.+|+-.|+..+-+..
T Consensus 246 fgvsfaLGAffaGMvL~eselsh-----raa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~p 302 (408)
T COG4651 246 FGVSFALGAFFAGMVLAESELSH-----RAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQP 302 (408)
T ss_pred eccchhHHHHHHHHHhcchhhhH-----HHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcch
Confidence 44555555555555555432210 1111111233333445556789999998886654
No 185
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=29.01 E-value=8.5e+02 Score=27.21 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHHHhHcccCCChhHHHHHHHhhc
Q 038269 43 LAHHLLKPMHQPRITSDIVIGLFL 66 (792)
Q Consensus 43 ~~~~l~~rl~~P~iv~~IlaGill 66 (792)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 445667777788777776666554
No 186
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=28.52 E-value=5.6e+02 Score=24.92 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=54.3
Q ss_pred EeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCcEEEE
Q 038269 624 IFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYA 703 (792)
Q Consensus 624 ~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~y~ 703 (792)
+..||. ..-.+.+++.|+++-..++-++. .+. .++.-+++.+++++.. +.+|.|.
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~---r~~------------------~~~~~~~~~i~~l~~~---g~~v~~~ 58 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLG---RSG------------------APSAEAEAAIRELESA---GARVEYV 58 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEE---SSG------------------GGSTTHHHHHHHHHHT---T-EEEEE
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEec---cCC------------------CccHHHHHHHHHHHhC---CCceeee
Confidence 455664 56888999999999988876662 110 1112245688887442 4589999
Q ss_pred EEecCChHHHHHHHHhhhcCc---cEEEEecCC
Q 038269 704 EKHLANSSETFATLRSLEGQY---ALIIVGRGE 733 (792)
Q Consensus 704 e~~v~~~~e~~~~i~~~~~~~---dL~iVGr~~ 733 (792)
..-+.|.+++.+++.+...++ |-||-+.+.
T Consensus 59 ~~Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 59 QCDVTDPEAVAAALAQLRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp E--TTSHHHHHHHHHTSHTTSS-EEEEEE----
T ss_pred ccCccCHHHHHHHHHHHHhccCCcceeeeeeee
Confidence 999999999999999887655 556666654
No 187
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=28.37 E-value=6.7e+02 Score=25.83 Aligned_cols=88 Identities=15% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH-HHhhccHHHHHHHHHhcCCCC
Q 038269 96 MFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSF-TLAGSGSHILTRVITNLKIGK 174 (792)
Q Consensus 96 lF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~-~ls~Ts~~vv~~iL~el~ll~ 174 (792)
-|..=+--+.+.+||+++..+.-...|.++.+..+..++.+++.+. .+..+. .=|+| .|+...+-++++-.
T Consensus 71 ALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~------~i~~Sl~pkSvT-tpiAm~vs~~iGG~- 142 (226)
T TIGR00659 71 ALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGP------EIIASLLPKSVT-TPIAMHVSEMIGGI- 142 (226)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH------HHHHHhhhHHhh-HHHHHHHHHHhCCh-
Confidence 3445555678889999888776666677777777777777776532 122222 23444 47777777777632
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 038269 175 SDIGKLGMAAGIHSDMITML 194 (792)
Q Consensus 175 s~~g~l~l~~a~i~Di~~~~ 194 (792)
-.++....+++-+++-.
T Consensus 143 ---~sLta~~vvitGi~Ga~ 159 (226)
T TIGR00659 143 ---PAVTAVFVILTGLLGTV 159 (226)
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 23333344444444433
No 188
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=28.08 E-value=5.6e+02 Score=27.92 Aligned_cols=82 Identities=4% Similarity=-0.008 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHH-Hhhhh
Q 038269 337 GRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFT-IVHTP 415 (792)
Q Consensus 337 ~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~-~~~~~ 415 (792)
..+...++..++.-+.+-.+..++.|++.-|+..++..-+.-..++++.+...++..-+.-+-|...++..+=+ .+++.
T Consensus 55 ~~~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIiva 134 (327)
T PF05982_consen 55 LPLLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVA 134 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHH
Confidence 33444445555555555555556689999999999988888888888888888887777777766554443322 33444
Q ss_pred HHH
Q 038269 416 FVV 418 (792)
Q Consensus 416 ~li 418 (792)
.++
T Consensus 135 l~L 137 (327)
T PF05982_consen 135 LLL 137 (327)
T ss_pred HHH
Confidence 444
No 189
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=27.17 E-value=3.4e+02 Score=29.00 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=71.3
Q ss_pred ceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCCCCcc
Q 038269 530 GITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIE 609 (792)
Q Consensus 530 ~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~~~~~ 609 (792)
+..|-.|.... ..+.+.|++.|++.++..||--....-.. .+...+........++++++|++=.|+|.+. .
T Consensus 17 ~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~-----~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~-e 88 (281)
T PRK06806 17 NYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNH-----SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTF-E 88 (281)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhcc-----CChHHHHHHHHHHHHHCCCCEEEECCCCCCH-H
Confidence 57777778777 77999999999999999998665432211 1122355667788999999999999998541 1
Q ss_pred ccccccccceeEEEEeccCcChHHHHHHHHHH---hcCCCeEE
Q 038269 610 NISRSQAASLNVAVIFIGGKDDREALAYASRV---ARHPAVKL 649 (792)
Q Consensus 610 ~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rm---a~~~~v~l 649 (792)
.....-.......++=--..+++|-++.++++ ++.-++.+
T Consensus 89 ~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 89 KIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 11000111223333333344788999888665 44555554
No 190
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=26.94 E-value=8.5e+02 Score=26.53 Aligned_cols=98 Identities=6% Similarity=-0.039 Sum_probs=49.0
Q ss_pred hcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh-CCChHHHHHHHHHh---hhhhHHHHHHHHHhhcccc
Q 038269 319 MGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML-GFHWPESVSLGLLL---SAKGHFYIFLAIMGAVHNY 394 (792)
Q Consensus 319 ~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~-~~~~re~~~lg~~l---~~kG~v~l~l~~~~~~~~~ 394 (792)
+|++++++++.. ....+....+..+.-++..++..+..++.+ +.+.. +.+|+.+ .|-|..+.+....+. |-
T Consensus 56 mgl~L~~~df~~-~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lAk--Gn 130 (328)
T TIGR00832 56 PLAKVDYSALGD-VFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLAK--GD 130 (328)
T ss_pred hhhcCCHHHHHH-HHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHcC--CC
Confidence 345565544431 123444455555666666777777777653 65543 5555543 455555544444432 21
Q ss_pred cChhhHHHHHHHHHHHHhhhhHHHHHhh
Q 038269 395 ITHTTAASLVIMIFFTIVHTPFVVQNII 422 (792)
Q Consensus 395 i~~~~~~~lv~~~vl~~~~~~~li~~l~ 422 (792)
.. -.-+...++.+++.+++|++...+.
T Consensus 131 va-lsv~lt~~stLl~~~~~P~l~~ll~ 157 (328)
T TIGR00832 131 PE-YTLVLVAVNSLFQVFLYAPLAWLLL 157 (328)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122224445555566677665543
No 191
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=26.66 E-value=9.8e+02 Score=27.17 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 038269 160 SHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLI 195 (792)
Q Consensus 160 ~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~l 195 (792)
+|++..+.+.+|+.+.+.--.+++++.+.|..+.++
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 477888888888766555568889999999988764
No 192
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=26.53 E-value=20 Score=37.65 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=69.2
Q ss_pred HHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHH
Q 038269 307 LSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLA 386 (792)
Q Consensus 307 ~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~ 386 (792)
.++++=++.|.-+|..+|+.-+. .++.+..+ -..+-++- ..+++.+...|+..+|+..+|.+=+.-|-.++.+.
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpll-anPktllL----GaAAQ~GI-F~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t 155 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLL-ANPKTLLL----GAAAQFGI-FATVFGALALGFTPKEAASIGIIGGADGPTAIYLT 155 (375)
T ss_pred ccCcccHHHHhccchhcccchhh-cCcHHHHh----hhHHHhch-HHHHHHHHHhCCCHhhhhheeeeccCCCCceEEec
Confidence 35778888899999999997653 44544432 22233332 33555677889999999999987777777666554
Q ss_pred HHhhcccccChhhHHHHHHH----HHHHHhhhhHHHHHhhhhhcccC
Q 038269 387 IMGAVHNYITHTTAASLVIM----IFFTIVHTPFVVQNIIGRARKHA 429 (792)
Q Consensus 387 ~~~~~~~~i~~~~~~~lv~~----~vl~~~~~~~li~~l~~~~~~~~ 429 (792)
+. +.++....+.++ ..+.-++-||++|.+-.+++|+.
T Consensus 156 ~~------LAP~Ll~~iAvAAYSYMALVPiIQPpimkaLTt~~ERkI 196 (375)
T COG1883 156 NK------LAPELLGAIAVAAYSYMALVPIIQPPIMKALTTKEERKI 196 (375)
T ss_pred cc------cCHHHHHHHHHHHHHHHHHhhhcccHHHHHhcCHHHHHh
Confidence 42 333333332221 12334567999998876555443
No 193
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=26.25 E-value=3.2e+02 Score=28.69 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHH
Q 038269 339 FFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIM 388 (792)
Q Consensus 339 ~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~ 388 (792)
+..+.++-=+.|-..|..++++.|++.+++...+++|+.--.+...++..
T Consensus 153 ~Q~~AliPGiSRSG~TI~a~l~~G~~r~~Aa~fSFllsiP~i~gA~~l~l 202 (255)
T TIGR00753 153 FQCLALIPGVSRSGSTISGGLFIGLNRKAAAEFSFLLAIPIMFGAGLLSL 202 (255)
T ss_pred HHHHHhccCCCCchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444467999999999999999999999999988665555555443
No 194
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=26.24 E-value=7.5e+02 Score=27.57 Aligned_cols=106 Identities=15% Similarity=0.076 Sum_probs=59.7
Q ss_pred HHhHcccCCChhH-HHHHHHhhccCccccccccccc----cHHHHHHHHHHHHHHHHHHHhhc-cChhhhhcCCcccchH
Q 038269 45 HHLLKPMHQPRIT-SDIVIGLFLGNIQPIRNGFELE----MIQTLNYIVEFGMICYMFVLGLE-MDPYVIFKPPTRDAIV 118 (792)
Q Consensus 45 ~~l~~rl~~P~iv-~~IlaGillGp~~~~~~lf~~~----~~~~l~~l~~lgl~~llF~~Gle-~d~~~l~~~~~~~~~i 118 (792)
+.+-+.+++|..+ .+|+.-.++-... +.|.+ ....-+.++.=-.-.+|+-+|+. +|++++-+.....-.+
T Consensus 281 ~il~kf~~~P~~va~MIil~a~lk~~n----lvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vi 356 (438)
T COG3493 281 GILGKFIGLPGPVAFMIILVAILKAAN----LVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVI 356 (438)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHH
Confidence 4445557799777 3444434433222 33422 22233444444444688999998 8999998776555444
Q ss_pred hHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHhh
Q 038269 119 AYGGMLST-FILGCSLTPFLHYSTHRKIVVAITLSFTLAG 157 (792)
Q Consensus 119 a~~~~l~p-~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~ 157 (792)
-..++.+. ...++..++++++.+ ...++.-|++++.
T Consensus 357 i~~~vVl~~i~~~~f~grl~~~YP---VEaAI~aglC~a~ 393 (438)
T COG3493 357 IALSVVLGAILGGAFVGRLMGFYP---VEAAITAGLCMAN 393 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc---hHHHHHHhHHhcC
Confidence 44444444 444555666776532 2345666677765
No 195
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=25.76 E-value=1.1e+03 Score=27.43 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=26.1
Q ss_pred chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHH-HHHHHHHhcC
Q 038269 116 AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSH-ILTRVITNLK 171 (792)
Q Consensus 116 ~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~-vv~~iL~el~ 171 (792)
..++..++.+..++.+++..+++.........++.+++-+++-+.. +.-++-.+++
T Consensus 358 glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~ErIreel~ 414 (498)
T PRK05812 358 GLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELR 414 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeHHHHHHHH
Confidence 3455555555566666666666654322222334444444443333 3334444444
No 196
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=25.40 E-value=7.7e+02 Score=26.83 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=66.5
Q ss_pred hhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHh---hhhhHHHHHH
Q 038269 309 TLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLL---SAKGHFYIFL 385 (792)
Q Consensus 309 ~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l---~~kG~v~l~l 385 (792)
..++.+.|...|+++...++. .....|...++..+.-++.=++..+..++.+++| +.+..|+++ .|-|..+.+.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~-~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S~~~ 117 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFL-AGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGGVASNAM 117 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHH-HhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCchhHHHH
Confidence 445666777889999876654 2345677777767777777777788888887754 445555544 5667777555
Q ss_pred HHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhh
Q 038269 386 AIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNII 422 (792)
Q Consensus 386 ~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~ 422 (792)
...+. |-.. -.-....++.++.-+++|.++.++.
T Consensus 118 t~lAk--GnVa-lsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 118 TYLAK--GNVA-LSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred HHHhc--CcHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55443 2111 1122233455666667777777754
No 197
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=25.16 E-value=1.2e+03 Score=27.75 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=25.4
Q ss_pred chHhHHHHHHHHHHHHHHHHHh-hcccchhHHHHHHHHHHHhhccHHHHH-HHHHhcC
Q 038269 116 AIVAYGGMLSTFILGCSLTPFL-HYSTHRKIVVAITLSFTLAGSGSHILT-RVITNLK 171 (792)
Q Consensus 116 ~~ia~~~~l~p~~~~~~~~~~l-~~~~~~~~~~al~lg~~ls~Ts~~vv~-~iL~el~ 171 (792)
..++.+++.+.+++.+++..++ +.....+...++.+++-+++=+..++. ++-.|++
T Consensus 465 glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI~ERIrEel~ 522 (604)
T PRK12933 465 GWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLK 522 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEEehHHHHHHH
Confidence 3445555555555555555555 443322223344444444443333333 4444544
No 198
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=25.09 E-value=5e+02 Score=29.60 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=31.0
Q ss_pred eeEEEEeccCcChHHHHHHHHHHh-cCCCeEEEEEEee
Q 038269 619 LNVAVIFIGGKDDREALAYASRVA-RHPAVKLTVIRFL 655 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma-~~~~v~ltv~r~~ 655 (792)
.+|++-+.||+|.--.|.+..++. ..++..++++|+-
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvn 53 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVH 53 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 689999999999988887777776 4568899999984
No 199
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=24.95 E-value=3.3e+02 Score=25.83 Aligned_cols=27 Identities=4% Similarity=0.025 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCCCh
Q 038269 29 GKIVGLLLAYVLTNLAHHLLKPMHQPR 55 (792)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~ 55 (792)
.++.|+++++.+..+...+.+-+++|-
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lPi 34 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIPM 34 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 567899999888888777777777553
No 200
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=23.82 E-value=62 Score=33.16 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhHcccC------CChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhh
Q 038269 36 LAYVLTNLAHHLLKPMH------QPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIF 109 (792)
Q Consensus 36 lil~~~~~~~~l~~rl~------~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 109 (792)
++...+...+++.+-.+ +|..++++++|.++-+.++....+ .....-..+..+.+....-..|++++.+.++
T Consensus 104 V~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~~--~~~iv~s~l~t~a~~I~~ik~gLgt~~r~~~ 181 (252)
T KOG3826|consen 104 VIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGAV--CAPIVVSPLRTVALTIIKIKAGLGTLPRAPE 181 (252)
T ss_pred hhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhce--eeeeeehhhhhccchHHHHHhhhcccccchh
Confidence 34455555666666544 455999999998887766543222 1223344566677778888999999999998
Q ss_pred cCCcccchHhH
Q 038269 110 KPPTRDAIVAY 120 (792)
Q Consensus 110 ~~~~~~~~ia~ 120 (792)
+..+.....++
T Consensus 182 nv~~vc~~~~v 192 (252)
T KOG3826|consen 182 NVLAVCCVLMV 192 (252)
T ss_pred hhhHHHhhhhh
Confidence 87665555433
No 201
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=23.19 E-value=5.9e+02 Score=27.80 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=32.6
Q ss_pred HHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHh
Q 038269 94 CYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFL 137 (792)
Q Consensus 94 ~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l 137 (792)
+..|..|..++++.+.+.+-....+++...+++..+++....++
T Consensus 207 ~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 207 FFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 45677888888888888887777777777777766666666655
No 202
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=22.97 E-value=1.5e+02 Score=34.55 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=21.4
Q ss_pred eccCcChHHHHHHHHHHh-cCCCeEEEEE
Q 038269 625 FIGGKDDREALAYASRVA-RHPAVKLTVI 652 (792)
Q Consensus 625 f~GG~ddreAL~~a~rma-~~~~v~ltv~ 652 (792)
..+-|.=..|...+.+|+ .||+++..++
T Consensus 126 ~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~i 154 (515)
T TIGR03140 126 SLTCQNCPDVVQALNQMALLNPNISHTMI 154 (515)
T ss_pred eCCCCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 345667778888889997 5798888775
No 203
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=22.96 E-value=5.8e+02 Score=26.16 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=23.5
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeE
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVK 648 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ 648 (792)
.++++.|.||+|+--.|.++.+.. +|.+.
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~-~~~i~ 54 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS-EPMIP 54 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh-CCCCC
Confidence 478899999999999999998876 35444
No 204
>PRK01844 hypothetical protein; Provisional
Probab=22.93 E-value=3.9e+02 Score=22.20 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchh
Q 038269 221 SASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTH 256 (792)
Q Consensus 221 ~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~ 256 (792)
++++++.++.++|+.|..+..-.+.+| |++|-.
T Consensus 11 I~~li~G~~~Gff~ark~~~k~lk~NP---pine~m 43 (72)
T PRK01844 11 VVALVAGVALGFFIARKYMMNYLQKNP---PINEQM 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHH
Confidence 344444556677888877776666665 345543
No 205
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.90 E-value=1.4e+02 Score=33.84 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCcEEEEEEec---CChHHHHHHHHhhhc--CccEEEEecCCCC
Q 038269 685 ECFAEFYERQVAEGHVAYAEKHL---ANSSETFATLRSLEG--QYALIIVGRGERA 735 (792)
Q Consensus 685 ~~l~e~~~~~~~~~~v~y~e~~v---~~~~e~~~~i~~~~~--~~dL~iVGr~~~~ 735 (792)
+.+...+++... -+|.+-...| +-+.|++++|+..+. ++|++|||||+|.
T Consensus 151 DIl~~~~rR~P~-~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 151 DILHTLSRRFPS-VEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHhhCCC-CeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 344445444322 2344444433 224789999998854 4999999999874
No 206
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=22.85 E-value=3.6e+02 Score=26.05 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=29.6
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCC--CeEEEEEEee
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHP--AVKLTVIRFL 655 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~--~v~ltv~r~~ 655 (792)
||++-+.||.|.--++.++.+..++- +.+++++++-
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 58899999999999999998876644 7788888774
No 207
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=22.26 E-value=5.4e+02 Score=25.16 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=50.4
Q ss_pred CchhhHHHHHHhhhcCCCC---cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhH
Q 038269 275 GYSPILSAFMAGIFFPSEG---RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKV 351 (792)
Q Consensus 275 G~~~~lgafvaGl~l~~~~---~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~ 351 (792)
.+...-|+++.|+++.+.. |.. +......+..++.+-+|...+|++.-...+..-....+.. .++-++.++.-.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~-~~~~~~i~~~~~ 98 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKL-LLLGVIITLVPL 98 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHH
Confidence 3334456777777776542 111 3344555567888899999999998653232111112332 233333444455
Q ss_pred HHHHHHHH-hhCCChHH
Q 038269 352 VGTVICGL-MLGFHWPE 367 (792)
Q Consensus 352 l~~~l~~~-~~~~~~re 367 (792)
+.++..++ ++|+++-.
T Consensus 99 ~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 99 LIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 55666666 88888654
No 208
>PRK00536 speE spermidine synthase; Provisional
Probab=22.07 E-value=3.3e+02 Score=28.78 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=7.9
Q ss_pred cCccEEEEec
Q 038269 722 GQYALIIVGR 731 (792)
Q Consensus 722 ~~~dL~iVGr 731 (792)
+.||+||+-.
T Consensus 138 ~~fDVIIvDs 147 (262)
T PRK00536 138 KKYDLIICLQ 147 (262)
T ss_pred CcCCEEEEcC
Confidence 5699999873
No 209
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=21.89 E-value=6.9e+02 Score=26.59 Aligned_cols=105 Identities=8% Similarity=0.023 Sum_probs=46.8
Q ss_pred HHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHH-hhhhhHHHHHHHHHhhc
Q 038269 313 PIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLL-LSAKGHFYIFLAIMGAV 391 (792)
Q Consensus 313 PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~-l~~kG~v~l~l~~~~~~ 391 (792)
.+-+..+|++++++.+.. ....+......++.-++.-++.++..+..++.+......+-+. ..|-|..+.+.+.....
T Consensus 15 ~~~m~~~G~~l~~~~~~~-~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~~g 93 (286)
T TIGR00841 15 FLIMFSMGCTLEFEDFKG-HLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLLKG 93 (286)
T ss_pred HHHHHHccCCCcHHHHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHhCC
Confidence 334556677777655421 1111222333334445555666666666666654332222111 13445555444333221
Q ss_pred ccccChhhHHHHHHHHHHHHhhhhHHHHHh
Q 038269 392 HNYITHTTAASLVIMIFFTIVHTPFVVQNI 421 (792)
Q Consensus 392 ~~~i~~~~~~~lv~~~vl~~~~~~~li~~l 421 (792)
. .+-.-...+++.+++.++.|..+..+
T Consensus 94 n---~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 94 D---MALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred C---HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12223334445555555555555543
No 210
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=21.81 E-value=3.7e+02 Score=24.91 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=19.4
Q ss_pred eEEEEeccCc----ChHHHHHHHHHHhcCCC
Q 038269 620 NVAVIFIGGK----DDREALAYASRVARHPA 646 (792)
Q Consensus 620 ~v~v~f~GG~----ddreAL~~a~rma~~~~ 646 (792)
++++++.++| .-|+||.+|+.++....
T Consensus 2 ~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh 32 (128)
T PRK00207 2 RYAIAVTGPAYGTQQASSAYQFAQALLAEGH 32 (128)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4566666666 45999999988876543
No 211
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=20.80 E-value=3.4e+02 Score=31.87 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=18.8
Q ss_pred hhCCChHHHHHHHHHhhhhhHHHHH
Q 038269 360 MLGFHWPESVSLGLLLSAKGHFYIF 384 (792)
Q Consensus 360 ~~~~~~re~~~lg~~l~~kG~v~l~ 384 (792)
..+++++|++.+|.+++.---+..+
T Consensus 157 ~~~~~f~d~L~fGaliSATDPVtvL 181 (575)
T KOG1965|consen 157 IYDLSFKDCLAFGALISATDPVTVL 181 (575)
T ss_pred cccccHHHHHHHhhHhcccCchHHH
Confidence 3578999999999988765544443
No 212
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=20.45 E-value=1.7e+02 Score=27.57 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=43.2
Q ss_pred hhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCC
Q 038269 545 MPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGF 605 (792)
Q Consensus 545 m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~ 605 (792)
..+.+..++++.+++.|++|+-.+ .||+........+.+-+++-++-++.| +++|--+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 478899999999999999998654 456654444456777777777668887 7888643
No 213
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.01 E-value=1.7e+02 Score=33.25 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=26.6
Q ss_pred cEEEEEEecCC---hHHHHHHHHhhhc-CccEEEEecCCCC
Q 038269 699 HVAYAEKHLAN---SSETFATLRSLEG-QYALIIVGRGERA 735 (792)
Q Consensus 699 ~v~y~e~~v~~---~~e~~~~i~~~~~-~~dL~iVGr~~~~ 735 (792)
++.+-...|-. ..+++++|+.++. +||++|||||+|.
T Consensus 164 ~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 164 EVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred eEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 45555555521 3678888888865 3899999999985
Done!