Query 038269
Match_columns 792
No_of_seqs 334 out of 1921
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 1.2E-23 4.2E-28 227.8 17.0 302 83-423 59-385 (388)
2 3mt0_A Uncharacterized protein 99.4 4.6E-12 1.6E-16 134.5 20.2 261 445-776 8-277 (290)
3 3loq_A Universal stress protei 99.3 5E-12 1.7E-16 134.4 14.2 266 445-776 23-291 (294)
4 3olq_A Universal stress protei 99.3 1.2E-10 4.3E-15 124.9 21.9 290 445-778 8-308 (319)
5 3ab8_A Putative uncharacterize 99.3 1.8E-10 6.2E-15 120.4 21.2 260 446-773 2-267 (268)
6 3cis_A Uncharacterized protein 99.2 5E-10 1.7E-14 119.8 22.0 281 445-775 20-306 (309)
7 3s3t_A Nucleotide-binding prot 98.2 1.2E-05 4E-10 75.2 11.6 137 445-599 6-144 (146)
8 3fdx_A Putative filament prote 98.1 1.6E-05 5.3E-10 74.0 12.2 137 445-599 2-141 (143)
9 3dlo_A Universal stress protei 98.1 8.9E-06 3E-10 77.4 10.6 128 445-599 25-153 (155)
10 3hgm_A Universal stress protei 98.1 8.1E-06 2.8E-10 76.3 9.9 140 446-599 4-146 (147)
11 3fg9_A Protein of universal st 98.0 9.5E-06 3.2E-10 76.9 8.4 135 445-599 16-154 (156)
12 1mjh_A Protein (ATP-binding do 98.0 4.7E-05 1.6E-09 72.4 13.4 141 445-600 6-157 (162)
13 3idf_A USP-like protein; unive 98.0 4.5E-05 1.5E-09 70.4 12.3 132 446-599 3-136 (138)
14 2dum_A Hypothetical protein PH 98.0 5.4E-05 1.8E-09 72.7 12.9 141 446-600 7-154 (170)
15 2z08_A Universal stress protei 97.9 2.6E-05 9.1E-10 72.0 8.8 131 446-599 4-135 (137)
16 3tnj_A Universal stress protei 97.9 2.5E-05 8.5E-10 73.3 7.9 138 445-600 7-145 (150)
17 1tq8_A Hypothetical protein RV 97.9 3.8E-05 1.3E-09 73.6 9.2 136 445-600 18-156 (163)
18 3idf_A USP-like protein; unive 97.8 0.00012 4E-09 67.5 11.9 134 619-773 2-137 (138)
19 2gm3_A Unknown protein; AT3G01 97.8 0.00013 4.4E-09 70.4 11.8 143 445-600 6-161 (175)
20 2dum_A Hypothetical protein PH 97.8 9.6E-05 3.3E-09 70.9 10.4 151 618-783 5-164 (170)
21 3s3t_A Nucleotide-binding prot 97.8 9.9E-05 3.4E-09 68.7 10.1 139 617-774 4-146 (146)
22 1jmv_A USPA, universal stress 97.7 6.4E-05 2.2E-09 69.6 8.4 132 446-600 4-136 (141)
23 3zux_A Transporter, ASBTNM; tr 97.7 0.02 6.9E-07 61.2 28.4 70 350-422 241-311 (332)
24 3dlo_A Universal stress protei 97.7 6.6E-05 2.3E-09 71.2 7.1 129 617-774 23-155 (155)
25 3hgm_A Universal stress protei 97.6 4.2E-05 1.4E-09 71.3 5.5 141 619-773 3-147 (147)
26 3tnj_A Universal stress protei 97.6 9.4E-05 3.2E-09 69.3 7.8 140 618-776 6-148 (150)
27 1q77_A Hypothetical protein AQ 97.5 0.00061 2.1E-08 62.6 11.0 129 445-599 5-136 (138)
28 3fg9_A Protein of universal st 97.4 0.00021 7.1E-09 67.5 6.8 136 617-774 14-156 (156)
29 1mjh_A Protein (ATP-binding do 97.4 0.00075 2.6E-08 63.9 10.3 141 618-775 5-159 (162)
30 3fdx_A Putative filament prote 97.4 0.00077 2.6E-08 62.2 10.1 136 619-773 2-142 (143)
31 2z08_A Universal stress protei 97.3 0.00099 3.4E-08 61.2 10.2 131 619-773 3-136 (137)
32 3mt0_A Uncharacterized protein 97.2 0.00087 3E-08 70.3 10.1 133 445-600 135-274 (290)
33 1tq8_A Hypothetical protein RV 97.2 0.0012 4.1E-08 63.0 9.8 139 617-776 16-159 (163)
34 1jmv_A USPA, universal stress 97.2 0.0017 5.9E-08 59.7 10.5 134 619-776 3-139 (141)
35 3olq_A Universal stress protei 97.2 0.00068 2.3E-08 72.0 8.5 144 445-605 157-308 (319)
36 1q77_A Hypothetical protein AQ 97.0 0.003 1E-07 57.9 9.6 38 618-655 4-41 (138)
37 2gm3_A Unknown protein; AT3G01 96.8 0.0057 2E-07 58.6 11.0 143 618-777 5-165 (175)
38 3loq_A Universal stress protei 96.8 0.002 6.9E-08 67.5 8.3 119 444-600 170-288 (294)
39 3cis_A Uncharacterized protein 96.8 0.0038 1.3E-07 66.0 9.9 143 616-777 17-163 (309)
40 3ab8_A Putative uncharacterize 96.7 0.0051 1.7E-07 63.4 10.2 141 620-776 2-150 (268)
41 3g40_A Na-K-CL cotransporter; 94.2 0.57 2E-05 48.1 13.4 221 444-734 20-255 (294)
42 3zux_A Transporter, ASBTNM; tr 70.8 38 0.0013 35.5 12.9 127 283-421 28-155 (332)
43 2k3c_A TMIX peptide; membrane 60.8 0.55 1.9E-05 31.6 -2.5 27 265-291 4-30 (33)
44 1efv_B Electron transfer flavo 58.7 21 0.00071 36.1 7.6 95 625-746 36-144 (255)
45 1efp_B ETF, protein (electron 58.0 21 0.00073 35.9 7.5 92 628-746 36-141 (252)
46 1o97_C Electron transferring f 56.6 15 0.00053 37.2 6.2 97 624-746 32-140 (264)
47 2l0e_A Sodium/hydrogen exchang 54.4 4 0.00014 27.4 0.9 25 148-172 6-30 (33)
48 1iv0_A Hypothetical protein; r 47.3 43 0.0015 28.3 6.6 57 543-603 37-93 (98)
49 2q5c_A NTRC family transcripti 44.5 1.1E+02 0.0038 29.2 10.0 141 535-728 6-147 (196)
50 2wsi_A FAD synthetase; transfe 41.0 98 0.0034 31.9 9.6 93 619-735 54-169 (306)
51 1zun_A Sulfate adenylyltransfe 35.1 37 0.0013 35.5 5.2 35 620-654 48-82 (325)
52 3fwk_A FMN adenylyltransferase 33.5 1.4E+02 0.0048 30.8 9.1 91 620-734 60-171 (308)
53 3a2k_A TRNA(Ile)-lysidine synt 28.6 1.1E+02 0.0039 33.4 8.0 59 619-694 19-77 (464)
54 1vhx_A Putative holliday junct 27.3 74 0.0025 29.1 5.2 59 542-603 40-98 (150)
55 1ni5_A Putative cell cycle pro 26.0 1.1E+02 0.0038 33.2 7.2 37 619-655 14-51 (433)
56 1wy5_A TILS, hypothetical UPF0 24.6 1E+02 0.0035 31.8 6.4 37 619-655 25-62 (317)
57 1nu0_A Hypothetical protein YQ 23.9 72 0.0025 28.8 4.3 69 532-603 26-96 (138)
58 2pju_A Propionate catabolism o 22.7 1.6E+02 0.0054 28.9 6.9 148 533-730 12-160 (225)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.90 E-value=1.2e-23 Score=227.79 Aligned_cols=302 Identities=16% Similarity=0.155 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhh----hcCCcc--cchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHh
Q 038269 83 TLNYIVEFGMICYMFVLGLEMDPYVI----FKPPTR--DAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLA 156 (792)
Q Consensus 83 ~l~~l~~lgl~~llF~~Gle~d~~~l----~~~~~~--~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls 156 (792)
....+.+-.+.+|||.+|+|+|.+.+ ++.+|. ....++.|+++|++++ ..++.... .+..-..+.+
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy----~~~~~~~~----~~~~gw~ip~ 130 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY----LAFNYADP----ITREGWAIPA 130 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH----GGGCCSST----THHHHTSSSS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhcCCh----hhhhhhHHHH
Confidence 34556666777899999999999877 555553 6788999999999874 33433211 1344456677
Q ss_pred hccHHHHHHHHHhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 038269 157 GSGSHILTRVITNLK-IGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVS 235 (792)
Q Consensus 157 ~Ts~~vv~~iL~el~-ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~ 235 (792)
.|+.+....++..++ ..++..++.+++.|++||+.+|+++++++. + +.. ..+... .+++.++.
T Consensus 131 ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~-~~~------~~~l~~-~~~~~~~~---- 194 (388)
T 1zcd_A 131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----N-DLS------MASLGV-AAVAIAVL---- 194 (388)
T ss_dssp CCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----C-CCC------HHHHHH-HHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----C-Ccc------HHHHHH-HHHHHHHH----
Confidence 799888889999875 456777899999999999999999998742 2 121 111111 11111111
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC----cchHHHHHHHhHHHHhhh
Q 038269 236 PVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG----RMSKWTVGKVNYLLSTLY 311 (792)
Q Consensus 236 r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~----~~~~~l~~kl~~~~~~~~ 311 (792)
.++.|+. +++...+.++ .+ .+.+.++..|+|+++|+|++|+++|..+ +..+++++++++++..++
T Consensus 195 ----~~l~r~~-----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~i 263 (388)
T 1zcd_A 195 ----AVLNLCG-----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLI 263 (388)
T ss_dssp ----HHHHHTT-----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTH
T ss_pred ----HHHHHhc-----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHH
Confidence 1222221 1223233333 22 4456779999999999999999999853 357889999999999999
Q ss_pred hHHH-HHhhccccccccccc-ccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhhhh
Q 038269 312 YPIF-FFWMGFHAKLFTFEA-DTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSAKG 379 (792)
Q Consensus 312 ~Plf-F~~~Gl~~d~~~l~~-~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~kG 379 (792)
+|+| |+..|.++|...... .++. ...+++..+++|+++++..++.. |++|+|...+|++++.++
T Consensus 264 lPlFaFanaGv~l~~~~~~~l~~~~----~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigf 339 (388)
T 1zcd_A 264 LPLFAFANAGVSLQGVTLDGLTSIL----PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGF 339 (388)
T ss_dssp HHHHHHHHCCCCCSSSCCCTHHHHS----STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCH
T ss_pred HHHHHHHhcCeeecccchhhccChH----HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccch
Confidence 9999 999999999743211 1111 22445566899999955555554 899999999999999999
Q ss_pred HHHHHHHHHhhcccc--cChhhHHHHHHHHHHHHhhhhHHHHHhhh
Q 038269 380 HFYIFLAIMGAVHNY--ITHTTAASLVIMIFFTIVHTPFVVQNIIG 423 (792)
Q Consensus 380 ~v~l~l~~~~~~~~~--i~~~~~~~lv~~~vl~~~~~~~li~~l~~ 423 (792)
++++++++.+++.+. +.++.+..++++++++++++|.+.|+.++
T Consensus 340 tmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 340 TMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLR 385 (388)
T ss_dssp HHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred HHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999998875 35677999999999999999988876543
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.43 E-value=4.6e-12 Score=134.52 Aligned_cols=261 Identities=14% Similarity=0.104 Sum_probs=165.8
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV 524 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 524 (792)
-+||+++...+.....++.+..++... ...++++|+++ + + +. .+.-++..+ .+.
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~-~----------~--~~--------~~~l~~~~~---~~~ 61 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVT--QSHLHLLVCEK-R----------R--DH--------SAALNDLAQ---ELR 61 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHH--CCEEEEEEECS-S----------S--CC--------HHHHHHHHH---HHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhc--CCeEEEEEeeC-c----------H--HH--------HHHHHHHHH---HHh
Confidence 379999998888888888888887553 35799999987 1 0 00 011122222 222
Q ss_pred hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCC
Q 038269 525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRG 604 (792)
Q Consensus 525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg 604 (792)
. .++.++...... .+..+.|++.|++.++|+|++|.|.+.... ...+++.-+++++++||+|-| |..+
T Consensus 62 ~---~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~------~~~~gs~~~~vl~~~~~PVlv-v~~~ 129 (290)
T 3mt0_A 62 E---EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLK------KAILTPDDWKLLRFAPCPVLM-TKTA 129 (290)
T ss_dssp H---TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTS------TTSCCHHHHHHHHHCSSCEEE-ECCC
T ss_pred h---CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchh------hcccCHHHHHHHhcCCCCEEE-ecCC
Confidence 2 247777666545 678999999999999999999998653322 224677889999999999854 4322
Q ss_pred CCCccccccccccceeEEEEeccCcC-------hHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhh
Q 038269 605 FGSIENISRSQAASLNVAVIFIGGKD-------DREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELE 677 (792)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~v~f~GG~d-------dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~ 677 (792)
.. . ...+|++++=|.++ .+.|+++|.++++..+.+++++|+......... .. .....+
T Consensus 130 ~~--------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~--~~----~~~~~~ 194 (290)
T 3mt0_A 130 RP--------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA--DP----TFQLSE 194 (290)
T ss_dssp SC--------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------------CHHHHH
T ss_pred CC--------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc--Cc----hhHHHH
Confidence 11 1 34699999999987 799999999999999999999999864321100 00 000112
Q ss_pred hhhhhhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccchh
Q 038269 678 EEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPI 755 (792)
Q Consensus 678 ~~~~~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~i 755 (792)
..++..++.++++.+++.. ..+.+. +..| +....|.+.+ .++||+++|+++.. |+.+| =+|-+
T Consensus 195 ~~~~~~~~~l~~~~~~~g~-~~~~~~---v~~g-~~~~~I~~~a~~~~~dLiVmG~~g~~------~~~~~----~~Gsv 259 (290)
T 3mt0_A 195 TIEARYREACRTFQAEYGF-SDEQLH---IEEG-PADVLIPRTAQKLDAVVTVIGTVART------GLSGA----LIGNT 259 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTC-CTTTEE---EEES-CHHHHHHHHHHHHTCSEEEEECCSSC------CGGGC----CSCHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CcceEE---Eecc-CHHHHHHHHHHhcCCCEEEECCCCCc------CCcce----ecchH
Confidence 2223345566666555421 111111 1122 2334444433 34999999997531 23332 26877
Q ss_pred hhhhhcCCCCCceeEEEEeee
Q 038269 756 GDVLSGSDFLVRTSVLIIKQH 776 (792)
Q Consensus 756 Gd~las~d~~~~~SvLvvqq~ 776 (792)
.+-+... ++++||||..+
T Consensus 260 ~~~vl~~---~~~pVLvv~~~ 277 (290)
T 3mt0_A 260 AEVVLDT---LESDVLVLKPD 277 (290)
T ss_dssp HHHHHTT---CSSEEEEECCH
T ss_pred HHHHHhc---CCCCEEEECCC
Confidence 7777764 67899999764
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.35 E-value=5e-12 Score=134.44 Aligned_cols=266 Identities=17% Similarity=0.101 Sum_probs=164.6
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV 524 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 524 (792)
-|||+|+...+.....++.+..++.. ....++++|+++.+...... ... ......+ ...+..++.++.+....
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~--~~~--~~~~~~~-~~~~~~~~~l~~~~~~~ 95 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLSTVS--GGI--DIDHYID-EMSEKAEEVLPEVAQKI 95 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHT--TCCEEEEECCEECTTC-------CC--CTTHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCccccccc--ccc--cHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 38999999888888888888888754 34789999998865422110 000 0000001 11122344554444443
Q ss_pred hccCcceEEEE-eEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecC
Q 038269 525 DENGGGITLKR-MLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDR 603 (792)
Q Consensus 525 ~~~~~~v~v~~-~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdr 603 (792)
+ ..++.++. ..... .+..+.| .|++.++|+|++|.|.+....+ ..++++.+++++++||+|-| |.+
T Consensus 96 ~--~~g~~~~~~~v~~~--g~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlv-v~~ 162 (294)
T 3loq_A 96 E--AAGIKAEVIKPFPA--GDPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYI-FKH 162 (294)
T ss_dssp H--HTTCEEEECSSCCE--ECHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEE-ECC
T ss_pred H--HcCCCcceeEeecc--CChhHhe--eeccCCCCEEEEcCCCCccccc------eeeccHHHHHHhcCCCCEEE-ecC
Confidence 3 23577776 33313 5788899 9999999999999985432211 22456778999999999844 444
Q ss_pred CCCCccccccccccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhh
Q 038269 604 GFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKID 683 (792)
Q Consensus 604 g~~~~~~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 683 (792)
+... .....+|++++-|.+.+++|+++|.++++..+.+++++++..... .++.-
T Consensus 163 ~~~~-------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------------------~~~~l 216 (294)
T 3loq_A 163 DMVV-------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------------------KTADL 216 (294)
T ss_dssp CTTT-------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------------------CHHHH
T ss_pred cccc-------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------------------HHHHH
Confidence 3210 123469999999999999999999999999999999999965321 01111
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhc
Q 038269 684 DECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSG 761 (792)
Q Consensus 684 ~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las 761 (792)
+++.+.+ +++ +-++.+ .+..| +....|.+..+ ++||+++|+++.. ++.+| =+|-+.+-+..
T Consensus 217 ~~~~~~l-~~~--~~~~~~---~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~ 279 (294)
T 3loq_A 217 RVMEEVI-GAE--GIEVHV---HIESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIR 279 (294)
T ss_dssp HHHHHHH-HHT--TCCEEE---EEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHH
T ss_pred HHHHHHH-HHc--CCcEEE---EEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHh
Confidence 2233333 222 223332 23334 44555555533 6999999997632 22222 15666666655
Q ss_pred CCCCCceeEEEEeee
Q 038269 762 SDFLVRTSVLIIKQH 776 (792)
Q Consensus 762 ~d~~~~~SvLvvqq~ 776 (792)
. .++.||||.+.
T Consensus 280 ~---~~~pvLvv~~~ 291 (294)
T 3loq_A 280 R---SPVPVFVCKRG 291 (294)
T ss_dssp H---CSSCEEEECSC
T ss_pred c---CCCCEEEECCC
Confidence 3 56799999765
No 4
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.30 E-value=1.2e-10 Score=124.93 Aligned_cols=290 Identities=12% Similarity=0.049 Sum_probs=169.4
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV 524 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 524 (792)
-+||+++...++....++.+..++... ...++++|+++-.....+-....+ ..........+..++.++.+....
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~ 82 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRN--GGRIKAFLPVYDLSYDMTTLLSPD---ERNAMRKGVINQKTAWIKQQARYY 82 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHH--CCEEEEEEEECCGGGGCTTTSCHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHc--CCeEEEEEEecccchhhccccChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999998888888888888887543 368999999863211000000000 000000001111233333222222
Q ss_pred hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCC
Q 038269 525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRG 604 (792)
Q Consensus 525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg 604 (792)
. ..++.++...... .+..+.|++.|++.++|+|++|.|.+.... ...+++.-.++++++||+|-| |..+
T Consensus 83 ~--~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~------~~~~Gs~~~~vl~~~~~PVlv-v~~~ 151 (319)
T 3olq_A 83 L--EAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLG------SLIFTPLDWQLLRKCPAPVWM-VKDK 151 (319)
T ss_dssp H--HTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CC------SCBCCHHHHHHHHHCSSCEEE-EESS
T ss_pred h--hcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhh------cccccccHHHHHhcCCCCEEE-ecCc
Confidence 2 2357777666645 789999999999999999999999653322 223677789999999999855 4332
Q ss_pred CCCccccccccccceeEEEEeccCcC-------hHHHHHHHHHHhcCC--CeEEEEEEeeecCCCCcccccccccCCcch
Q 038269 605 FGSIENISRSQAASLNVAVIFIGGKD-------DREALAYASRVARHP--AVKLTVIRFLLDNSENPQRRAATYKDNTAE 675 (792)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~v~f~GG~d-------dreAL~~a~rma~~~--~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~ 675 (792)
. .....+|++++=|.++ .+.|+++|.++++.. +.+++++|+............. .......
T Consensus 152 ~---------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~ 221 (319)
T 3olq_A 152 E---------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELP-DFDPNLY 221 (319)
T ss_dssp C---------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCT-TCCHHHH
T ss_pred c---------cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCC-cccHHHH
Confidence 1 1134689999999885 499999999999876 9999999998643311000000 0000000
Q ss_pred hhhhhhhhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccc
Q 038269 676 LEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELG 753 (792)
Q Consensus 676 ~~~~~~~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG 753 (792)
.+..++.-++.++++.+++.. ..+.+. +..| +....|.+.+ .+.||+++|+++.. |+.+| =+|
T Consensus 222 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~---v~~g-~~~~~I~~~a~~~~~dLiV~G~~g~~------~~~~~----~~G 286 (319)
T 3olq_A 222 NNALRGQHLIAMKELRQKFSI-PEEKTH---VKEG-LPEQVIPQVCEELNAGIVVLGILGRT------GLSAA----FLG 286 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-CGGGEE---EEES-CHHHHHHHHHHHTTEEEEEEECCSCC------STHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CcccEE---EecC-CcHHHHHHHHHHhCCCEEEEeccCcc------CCccc----ccc
Confidence 111222335566777554422 122111 1222 2344444443 36899999996531 22222 157
Q ss_pred hhhhhhhcCCCCCceeEEEEeeecc
Q 038269 754 PIGDVLSGSDFLVRTSVLIIKQHDF 778 (792)
Q Consensus 754 ~iGd~las~d~~~~~SvLvvqq~~~ 778 (792)
-+-+-+... ++++||||..+.+
T Consensus 287 sv~~~vl~~---~~~pVLvv~~~~~ 308 (319)
T 3olq_A 287 NTAEQLIDH---IKCDLLAIKPDGF 308 (319)
T ss_dssp HHHHHHHTT---CCSEEEEECCTTC
T ss_pred HHHHHHHhh---CCCCEEEECCCCC
Confidence 777766654 6789999987653
No 5
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.28 E-value=1.8e-10 Score=120.44 Aligned_cols=260 Identities=15% Similarity=0.110 Sum_probs=157.7
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhccc-Cccccc-cc---hhhhhhhhHHHHHHH
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNE-GIDTVT-VT---DKAVMEMREEITTAV 520 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~i~~af 520 (792)
|||+|+...++....++.+..++... ...++++|+++......+-..... ..+... .. .+...+..++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999988888888888888877542 357999999875431100000000 000000 00 001112234444444
Q ss_pred HHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCc-cCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 521 QSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQ-LEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 521 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~-~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
....+. .++.++.... . .+..+.|++. +.++|+|++|.|.+. ... ...++++-+++++++||+|-|
T Consensus 80 ~~~~~~--~g~~~~~~~~-~--g~~~~~I~~~--~~~~dliV~G~~g~~~~~~------~~~~Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 80 RQSALA--AGVAVEAVLE-E--GVPHEAILRR--ARAADLLVLGRSGEAHGDG------FGGLGSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHHH--TTCCEEEEEE-E--ECHHHHHHHH--HTTCSEEEEESSCTTSCTT------CCSCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHh--CCCCeEEEEe-c--CCHHHHHHhh--ccCCCEEEEeccCCCcccc------ccccchhHHHHHHhCCCCEEE
Confidence 443332 2466665544 2 5789999998 889999999998653 222 224678889999999999844
Q ss_pred EecCCCCCccccccccccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhh
Q 038269 600 LVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEE 679 (792)
Q Consensus 600 lVdrg~~~~~~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (792)
|.++.. ...+|++++-|.++++.|+++|.++++..+.+++++++.... ++.+
T Consensus 147 -v~~~~~----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----------------~~~~ 198 (268)
T 3ab8_A 147 -APGEPV----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP-----------------ARAE 198 (268)
T ss_dssp -ECSSCC----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----------------HHHH
T ss_pred -ECCCCC----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----------------HHHH
Confidence 543211 235899999999999999999999999999999999986421 1111
Q ss_pred hhhhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhh
Q 038269 680 MKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVL 759 (792)
Q Consensus 680 ~~~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~l 759 (792)
+. -+++.+.+ .++ +-++.+ . +.+| +..+.|.+..+++||+++|+ |+.+| =+|-+.+-+
T Consensus 199 ~~-l~~~~~~l-~~~--~~~~~~--~-~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~v 256 (268)
T 3ab8_A 199 AW-ALEAEAYL-RDH--GVEASA--L-VLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERV 256 (268)
T ss_dssp HH-HHHHHHHH-HHT--TCCEEE--E-EECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHH
T ss_pred HH-HHHHHHHH-HHc--CCceEE--E-EeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHH
Confidence 11 12233333 221 223432 2 2334 45566666666679999999 22232 256666655
Q ss_pred hcCCCCCceeEEEE
Q 038269 760 SGSDFLVRTSVLII 773 (792)
Q Consensus 760 as~d~~~~~SvLvv 773 (792)
... +++.||||
T Consensus 257 l~~---~~~pvlvv 267 (268)
T 3ab8_A 257 IRN---AQGPVLTA 267 (268)
T ss_dssp HHH---CSSCEEEE
T ss_pred Hhc---CCCCEEEe
Confidence 553 45678887
No 6
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.23 E-value=5e-10 Score=119.84 Aligned_cols=281 Identities=14% Similarity=0.144 Sum_probs=163.9
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHH-Hh
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQ-SY 523 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~-~~ 523 (792)
-+||+++...+.....++.+..++... ...++++|+++ +.... . ....... ...+ ...+..++.++.+. .+
T Consensus 20 ~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~-~~~~~-~--~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~ 91 (309)
T 3cis_A 20 LGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVS-PEVAT-W--LEVPLPP-GVLR-WQQDHGRHLIDDALKVV 91 (309)
T ss_dssp TEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECC-CCCCC-T--TCCCCCH-HHHH-HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEec-Ccccc-c--ccCCCCc-hhhH-HHHHHHHHHHHHHHHHH
Confidence 489999988888888888887777532 35799999987 22111 0 0000000 0000 11122333443332 23
Q ss_pred hhcc--CcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEe
Q 038269 524 VDEN--GGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILV 601 (792)
Q Consensus 524 ~~~~--~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlV 601 (792)
.+.. ..++.++.... . .+..+.|++.|+ ++|+|++|.|.+.... ...++++-+++++++||+|-| |
T Consensus 92 ~~~~~~~~~~~~~~~~~-~--g~~~~~I~~~a~--~~DliV~G~~g~~~~~------~~~~Gs~~~~vl~~~~~PVlv-v 159 (309)
T 3cis_A 92 EQASLRAGPPTVHSEIV-P--AAAVPTLVDMSK--DAVLMVVGCLGSGRWP------GRLLGSVSSGLLRHAHCPVVI-I 159 (309)
T ss_dssp HHHCSSSCCSCEEEEEE-S--SCHHHHHHHHGG--GEEEEEEESSCTTCCT------TCCSCHHHHHHHHHCSSCEEE-E
T ss_pred HHhcccCCCceEEEEEe-c--CCHHHHHHHHhc--CCCEEEECCCCCcccc------ccccCcHHHHHHHhCCCCEEE-E
Confidence 2210 11466665543 2 678999999996 8999999998653322 224678889999999999854 4
Q ss_pred cCCCCCccccccccccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhh
Q 038269 602 DRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMK 681 (792)
Q Consensus 602 drg~~~~~~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (792)
....... ......+|++++=|.+.++.|+++|.++++..+.+++++++........ ....+.+..++
T Consensus 160 ~~~~~~~-----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--------~~~~~~~~~~~ 226 (309)
T 3cis_A 160 HDEDSVM-----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE--------WPGIDWPATQS 226 (309)
T ss_dssp CTTCCCS-----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT--------CSSCCHHHHHH
T ss_pred cCCcccC-----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC--------CCcccHHHHHH
Confidence 3321100 0122358999999999999999999999999999999999975432100 00000011111
Q ss_pred hhHHHHHHHHHhhc---CCCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhh
Q 038269 682 IDDECFAEFYERQV---AEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDV 758 (792)
Q Consensus 682 ~d~~~l~e~~~~~~---~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~ 758 (792)
..++.++++..... .+-++.+. +..| +....|.+.+++.||+++|+++.. ++.+| =+|-+-+-
T Consensus 227 ~~~~~l~~~~~~~~~~~~~~~~~~~---~~~g-~~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~ 292 (309)
T 3cis_A 227 MAEQVLAERLAGWQERYPNVAITRV---VVRD-QPARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGET 292 (309)
T ss_dssp HHHHHHHHHHTTHHHHCTTSCEEEE---EESS-CHHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEE---EEcC-CHHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHH
Confidence 12233333322111 12234332 2334 345556556558999999997531 22222 25777776
Q ss_pred hhcCCCCCceeEEEEee
Q 038269 759 LSGSDFLVRTSVLIIKQ 775 (792)
Q Consensus 759 las~d~~~~~SvLvvqq 775 (792)
+... +++.||||..
T Consensus 293 vl~~---~~~pVlvv~~ 306 (309)
T 3cis_A 293 VAQL---ARTPVIVARE 306 (309)
T ss_dssp HHHH---CSSCEEEECC
T ss_pred HHhc---CCCCEEEeCC
Confidence 6653 5679999964
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.16 E-value=1.2e-05 Score=75.17 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=87.7
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV 524 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 524 (792)
-|||+++...++....++.+..++.. ....++++|+++.........-. . .....+ ...+..++.++.+....
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~-~---~~~~~~-~~~~~~~~~l~~~~~~~ 78 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDP-V---LSELLD-AEAAHAKDAMRQRQQFV 78 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHH-H---HHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCcccccccccc-c---cHHHHH-HHHHHHHHHHHHHHHHH
Confidence 37999998888888888888877754 24579999999865432211000 0 000000 11122344444444433
Q ss_pred hccCcce-EEEEeEeecCCCChhHHHHH-HHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 525 DENGGGI-TLKRMLALSTFSGMPQDICI-LAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 525 ~~~~~~v-~v~~~t~vs~~~~m~~dI~~-~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
+ ..++ .++..... .+..+.|++ .|++.++|+|++|.|.+.... ...++++-++|++++||+|-|
T Consensus 79 ~--~~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~------~~~~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 79 A--TTSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSPH------RVAVGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp T--TSSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCTT------TCSSCHHHHHHHHHCSSEEEE
T ss_pred H--hcCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCcc------eEEEcchHHHHhccCCCCEEE
Confidence 3 2346 55555443 468999999 999999999999998654332 224678889999999999854
No 8
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.15 E-value=1.6e-05 Score=74.00 Aligned_cols=137 Identities=18% Similarity=0.125 Sum_probs=85.3
Q ss_pred ceEEEEecCCCC--hhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269 445 LQILLCLHGSQN--ITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS 522 (792)
Q Consensus 445 lrILvcv~~~~~--~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 522 (792)
-|||+|+...++ ....++.+..++.. ....++++|+++............. . ......+..++..+.++.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~l~~ 73 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI--DDAEVHFLTVIPSLPYYASLGMAYT---A---ELPGMDELREGSETQLKE 73 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH--HTCEEEEEEEECC----------------------CHHHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh--cCCeEEEEEEecCCccccccccccc---c---hhhhHHHHHHHHHHHHHH
Confidence 379999987777 77777877777643 2357999999986532211100000 0 000111233555566666
Q ss_pred hhhccC-cceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 523 YVDENG-GGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 523 ~~~~~~-~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
+.++.+ .++.++..... .+..+.|++.|++.++|+|+||.|+ .... ...++++-++|++++||+|-|
T Consensus 74 ~~~~~~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~~~------~~~~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 74 IAKKFSIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PDIT------TYLLGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHTTSCCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TTCC------SCSSCHHHHHHHHHCSSEEEE
T ss_pred HHHHcCCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CCCe------eeeeccHHHHHHHhCCCCEEE
Confidence 655432 23445544443 4789999999999999999999983 2221 234788889999999999854
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.15 E-value=8.9e-06 Score=77.36 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=85.6
Q ss_pred ceEEEEecC-CCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269 445 LQILLCLHG-SQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY 523 (792)
Q Consensus 445 lrILvcv~~-~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 523 (792)
-|||+++.. .+.....++.+..++... ...++++|+++...... + ...+..++.++.+...
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~---------------~-~~~~~~~~~l~~~~~~ 86 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRTK---------------D-EDIIEAKETLSWAVSI 86 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTSC---------------H-HHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCccc---------------H-HHHHHHHHHHHHHHHH
Confidence 379999988 788888888888877542 35699999988442110 0 1112234444444333
Q ss_pred hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 524 VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
.+. .++.++..+.+. ..+..+.|++.|++.++|+|++|.|.+.... ...++++-++|++++||+|-|
T Consensus 87 ~~~--~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~------~~~lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 87 IRK--EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTG------KLIFGSVARDVILKANKPVIC 153 (155)
T ss_dssp HHH--TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTS------CEECCHHHHHHHHHCSSCEEE
T ss_pred HHh--cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCC------CEEeccHHHHHHHhCCCCEEE
Confidence 332 235555444342 2578999999999999999999998653322 224778889999999999854
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.13 E-value=8.1e-06 Score=76.28 Aligned_cols=140 Identities=15% Similarity=0.215 Sum_probs=86.4
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
|||+++...++....++.+..++... ...++++|+++.......... ...........+...+..++.++.+....+
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLS-MARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBS-SCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccc-ccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999988777888888887776542 467999999986531111100 000000000011112234455555544433
Q ss_pred ccCcceEE---EEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 526 ENGGGITL---KRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 526 ~~~~~v~v---~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
. .++.+ +..... .+..+.|++.|++.++|+|++|.|.+.... ...++++-++|++++||+|-|
T Consensus 81 ~--~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~------~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 81 E--LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDK------SLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp H--TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCS------CCCCCHHHHHHHHHCSSCEEE
T ss_pred h--cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcccc------ceeeccHHHHHHhhCCCCEEE
Confidence 2 23444 433332 578999999999999999999998654332 234678889999999999854
No 11
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.04 E-value=9.5e-06 Score=76.90 Aligned_cols=135 Identities=12% Similarity=0.123 Sum_probs=86.3
Q ss_pred ceEEEEec--CCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269 445 LQILLCLH--GSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS 522 (792)
Q Consensus 445 lrILvcv~--~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 522 (792)
-|||+|+. ..+.....++.+..++.. ....++++|+++....... .... ... .....+..++.++.+..
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~-----~~~~-~~~-~~~~~~~~~~~l~~~~~ 86 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHD--YDVPLGICSVLESEDINIF-----DSLT-PSK-IQAKRKHVEDVVAEYVQ 86 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHH--HTCCEEEEEEECCCCTTCC-----CSSH-HHH-HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEeCCCcccc-----ccCC-HHH-HHHHHHHHHHHHHHHHH
Confidence 37999998 888888888888877754 2357999999886532110 0000 000 00111223444444433
Q ss_pred hhhccCcce-EEEEeEeecCCCChhHHHHHH-HhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 523 YVDENGGGI-TLKRMLALSTFSGMPQDICIL-AEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 523 ~~~~~~~~v-~v~~~t~vs~~~~m~~dI~~~-a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
..+. .++ .++.....+ .+..+.|++. |++.++|+|++|.|.+.... ..++++-++|++++||+|-|
T Consensus 87 ~~~~--~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-------~~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 87 LAEQ--RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-------KIAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHH--HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-------SSCSCHHHHHHHHCSSEEEE
T ss_pred HHHH--cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-------eeecchHHHHHHhCCCCEEE
Confidence 3322 245 356555553 5789999999 99999999999998654332 23677789999999999854
No 12
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.04 E-value=4.7e-05 Score=72.42 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=86.4
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecc----cchhhhhcccC--c-ccc----ccchhhhhhhh
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTD----QIAATLVQNEG--I-DTV----TVTDKAVMEMR 513 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~----r~~~~~~~~~~--~-~~~----~~~~~~~~~~~ 513 (792)
-|||+++...++....++.+..++.. ....++++|+++... ...+. ..+. . ... ........+..
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIFSL--LLGVAGLNKSVEEFENELKNKLTEEA 81 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC-------------------CHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCeEEEEEEecCccccccccccc--cccccccccchhhhHHHHHHHHHHHH
Confidence 37999998888888888888888754 346899999987431 00000 0000 0 000 00000111223
Q ss_pred HHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhC
Q 038269 514 EEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNA 593 (792)
Q Consensus 514 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~a 593 (792)
++.++.+....+ ..++.++..+.. .+..+.|++.|++.++|+|++|.|.+.... ...++++-++|++++
T Consensus 82 ~~~l~~~~~~~~--~~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~------~~~~GSv~~~vl~~~ 150 (162)
T 1mjh_A 82 KNKMENIKKELE--DVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLK------EILLGSVTENVIKKS 150 (162)
T ss_dssp HHHHHHHHHHHH--HTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCT------TCSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--HcCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCcc------ceEecchHHHHHHhC
Confidence 334443333222 134666655433 578999999999999999999999654322 234778889999999
Q ss_pred CCceEEE
Q 038269 594 TCSVGIL 600 (792)
Q Consensus 594 pCsVgIl 600 (792)
||+|-|+
T Consensus 151 ~~pVlvv 157 (162)
T 1mjh_A 151 NKPVLVV 157 (162)
T ss_dssp CSCEEEE
T ss_pred CCCEEEE
Confidence 9998553
No 13
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.01 E-value=4.5e-05 Score=70.41 Aligned_cols=132 Identities=8% Similarity=0.067 Sum_probs=84.8
Q ss_pred eEEEEecCCCChhhHHHHHHHhc-CCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhh-hhhHHHHHHHHHh
Q 038269 446 QILLCLHGSQNITSTLNFLEISR-GTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVM-EMREEITTAVQSY 523 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~-~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~af~~~ 523 (792)
|||+++...++....++.+..++ .. ....++++|+++............. ...+ ... +..++.++.+...
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~l~~~~~~ 74 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAY-----DEIE-MKEEEKAKLLTQKFSTF 74 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcH-----HHHH-HHHHHHHHHHHHHHHHH
Confidence 79999988888888889888888 54 3478999999986543221100000 0000 111 2234444444444
Q ss_pred hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 524 VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
.+ ..++.++..... .+..+.|++.|+ ++|+|++|.|++....+.+ +++-++|++++||+|-|
T Consensus 75 ~~--~~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-------Gs~~~~vl~~~~~pVlv 136 (138)
T 3idf_A 75 FT--EKGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-------ASHQDDFIQKAPIPVLI 136 (138)
T ss_dssp HH--TTTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-------CCTTCHHHHHCSSCEEE
T ss_pred HH--HCCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-------CcHHHHHHhcCCCCEEE
Confidence 33 234666655443 468999999999 9999999999765443323 33346999999999854
No 14
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.99 E-value=5.4e-05 Score=72.73 Aligned_cols=141 Identities=16% Similarity=0.069 Sum_probs=84.7
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhh-hhcc----cCccccccchhhhhhhhHHHHHHH
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAAT-LVQN----EGIDTVTVTDKAVMEMREEITTAV 520 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~-~~~~----~~~~~~~~~~~~~~~~~~~i~~af 520 (792)
|||+++...++....++.+..++.. ....++++|+++........ -.+. ........ .+...+..++.++.+
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 7 KVLFPTDFSEGAYRAVEVFEKRNKM--EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDI-KEKLKEEASRKLQEK 83 (170)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHCCS--CCSEEEEEEEEETTGGGCCC------------CCTTS-HHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccccccccccHHHH-HHHHHHHHHHHHHHH
Confidence 7999998888888888888888764 34689999998743211000 0000 00000000 001112233444433
Q ss_pred HHhhhccCcceEEEE--eEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceE
Q 038269 521 QSYVDENGGGITLKR--MLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVG 598 (792)
Q Consensus 521 ~~~~~~~~~~v~v~~--~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVg 598 (792)
....+. .++.++. ... . .+..+.|++.|++.++|+|++|.|.+.... ...++++-++|++++||+|-
T Consensus 84 ~~~~~~--~g~~~~~~~~~~-~--g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~------~~~~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 84 AEEVKR--AFRAKNVRTIIR-F--GIPWDEIVKVAEEENVSLIILPSRGKLSLS------HEFLGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHH--HTTCSEEEEEEE-E--ECHHHHHHHHHHHTTCSEEEEESCCCCC--------TTCCCHHHHHHHHHCSSCEE
T ss_pred HHHHHH--cCCceeeeeEEe-c--CChHHHHHHHHHHcCCCEEEECCCCCCccc------cceechHHHHHHHhCCCCEE
Confidence 332221 1344443 332 2 578999999999999999999998653322 23477888999999999985
Q ss_pred EE
Q 038269 599 IL 600 (792)
Q Consensus 599 Il 600 (792)
|+
T Consensus 153 vv 154 (170)
T 2dum_A 153 II 154 (170)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.91 E-value=2.6e-05 Score=72.00 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=79.2
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD 525 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 525 (792)
|||+++...+.....++.+..++.. ....++++|+++-.. . +. .........+ ...+..++ .++.+.+
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~-~-~~----~~~~~~~~~~-~~~~~~~~---~l~~~~~ 71 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEA--HGARLIVVHAYEPVP-D-YL----GEPFFEEALR-RRLERAEG---VLEEARA 71 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEECC--------------------C-HHHHHHHH---HHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCCC-c-cc----cccchHHHHH-HHHHHHHH---HHHHHHH
Confidence 7999998877777788888777643 235799999987321 1 10 0000000000 11112233 3333332
Q ss_pred ccCcce-EEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 526 ENGGGI-TLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 526 ~~~~~v-~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
. .++ .++.... . .+..+.|++.|++.++|+|++|.|.+.... ...++++-++|++++||+|-|
T Consensus 72 ~--~g~~~~~~~~~-~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~------~~~~Gs~~~~vl~~~~~pVlv 135 (137)
T 2z08_A 72 L--TGVPKEDALLL-E--GVPAEAILQAARAEKADLIVMGTRGLGALG------SLFLGSQSQRVVAEAPCPVLL 135 (137)
T ss_dssp H--HCCCGGGEEEE-E--SSHHHHHHHHHHHTTCSEEEEESSCTTCCS------CSSSCHHHHHHHHHCSSCEEE
T ss_pred H--cCCCccEEEEE-e--cCHHHHHHHHHHHcCCCEEEECCCCCchhh------hhhhccHHHHHHhcCCCCEEE
Confidence 2 123 3333222 2 578999999999999999999999654322 224778889999999999855
No 16
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.87 E-value=2.5e-05 Score=73.31 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=78.1
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV 524 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 524 (792)
-|||+|+...++....++.+..++.. ....++++|+++......+..-.......... . .+..++..+.++.+.
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~~~~ 80 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPYGTAIPLDTETT-Y---DAMLDVEKQKLSQIG 80 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------CTTCCCSSSCCC-H---HHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCccccccccccccCcCHHHH-H---HHHHHHHHHHHHHHH
Confidence 37999998888888888888888754 34679999998754321000000000000000 0 111222333444443
Q ss_pred hccCcceE-EEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269 525 DENGGGIT-LKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL 600 (792)
Q Consensus 525 ~~~~~~v~-v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl 600 (792)
++.+ +. ++. .... .+..+.|++.|++.++|+|++|.|.+.... ..++++-++|++++||+|-|+
T Consensus 81 ~~~~--~~~~~~-~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-------~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 81 NTLG--IDPAHR-WLVW--GEPREEIIRIAEQENVDLIVVGSHGRHGLA-------LLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHT--CCGGGE-EEEE--SCHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEE
T ss_pred HHcC--CCcceE-EEec--CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-------eEecchHHHHHHhCCCCEEEE
Confidence 3211 22 111 1222 578999999999999999999998653322 235677789999999998553
No 17
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.87 E-value=3.8e-05 Score=73.62 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=82.2
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEE--EEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVT--DMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS 522 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~l--hLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 522 (792)
-|||+|+...+.....++.+..++. . ...++++ |+++......+.-...+ ...+ ...+..++.++.+..
T Consensus 18 ~~ILv~vD~s~~s~~al~~A~~lA~-~--~a~l~ll~a~v~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~ 88 (163)
T 1tq8_A 18 KTVVVGTDGSDSSMRAVDRAAQIAG-A--DAKLIIASAYLPQHEDARAADILKDE-----SYKV-TGTAPIYEILHDAKE 88 (163)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHT-T--TSEEEEEEECCC--------------------------CCTHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeeeccCcccccccccccH-----HHHH-HHHHHHHHHHHHHHH
Confidence 4899999887888888888888876 3 3578899 88764431011000000 0000 111223444444443
Q ss_pred hhhccCcceE-EEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269 523 YVDENGGGIT-LKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL 600 (792)
Q Consensus 523 ~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl 600 (792)
..+ ..++. ++..+.. .+..+.|++.|++.++|+|+||.|.+....+ ..++++-++|++++||+|-|+
T Consensus 89 ~~~--~~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~------~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 89 RAH--NAGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp HHH--TTTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEEE
T ss_pred HHH--HcCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcccc------eeeccHHHHHHHhCCCCEEEE
Confidence 333 23465 6655443 5789999999999999999999986533211 235667799999999998553
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.84 E-value=0.00012 Score=67.53 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=79.0
Q ss_pred eeEEEEeccCcChHHHHHHHHHHh-cCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhh-hhhHHHHHHHHHhhcC
Q 038269 619 LNVAVIFIGGKDDREALAYASRVA-RHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEM-KIDDECFAEFYERQVA 696 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma-~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~e~~~~~~~ 696 (792)
++|++++-|.++.+.|+++|.+++ +..+.+++++|+.+........... .....+..+ +..++.++++.+....
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLA----AYDEIEMKEEEKAKLLTQKFSTFFTE 77 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccC----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999 9999999999998654321000000 000011111 3345666666544322
Q ss_pred CCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 697 EGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 697 ~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
..+.+... +..| +..+.|.+.++++||+|+|+++.. .|.+.- |-+-+-+... +++.||||
T Consensus 78 -~g~~~~~~-v~~g-~~~~~I~~~a~~~dliV~G~~~~~---------~~~~~~--Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 78 -KGINPFVV-IKEG-EPVEMVLEEAKDYNLLIIGSSENS---------FLNKIF--ASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp -TTCCCEEE-EEES-CHHHHHHHHHTTCSEEEEECCTTS---------TTSSCC--CCTTCHHHHH---CSSCEEEE
T ss_pred -CCCCeEEE-EecC-ChHHHHHHHHhcCCEEEEeCCCcc---------hHHHHh--CcHHHHHHhc---CCCCEEEe
Confidence 22332222 2233 344455555448999999997531 222322 6555555543 45788887
No 19
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.80 E-value=0.00013 Score=70.44 Aligned_cols=143 Identities=7% Similarity=0.049 Sum_probs=79.5
Q ss_pred ceEEEEecCCC---------ChhhHHHHHHHhcCCC-CCCceEEEEEEeeecccchhhhhcccCccccc-cch--hhhhh
Q 038269 445 LQILLCLHGSQ---------NITSTLNFLEISRGTA-NPGVAVYVTDMIELTDQIAATLVQNEGIDTVT-VTD--KAVME 511 (792)
Q Consensus 445 lrILvcv~~~~---------~~~~li~l~~~~~~~~-~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~-~~~--~~~~~ 511 (792)
-|||+++...+ .....++.+..+.... .....++++|+++.......- ... ...... ..+ +...+
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDD-VDS-IYASPEDFRDMRQSNKA 83 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-----------C-CCCSHHHHHHHTTSHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccc-ccc-ccCCHHHHHHHHHHHHH
Confidence 47999998777 7777788877754322 135689999998643211000 000 000000 000 00011
Q ss_pred hhHHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhh
Q 038269 512 MREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLR 591 (792)
Q Consensus 512 ~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~ 591 (792)
..++.++.+....+ ..++.++..+.. .+..+.|++.|++.++|+|+||.|.+....+ ..++++-++|++
T Consensus 84 ~~~~~l~~~~~~~~--~~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~------~~~Gsva~~vl~ 152 (175)
T 2gm3_A 84 KGLHLLEFFVNKCH--EIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQK------VFVGTVSAFCVK 152 (175)
T ss_dssp HHHHHHHHHHHHHH--HHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HCCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhh------hhcCchHHHHHh
Confidence 12334443333222 124666654432 5789999999999999999999986533221 236778899999
Q ss_pred hCCCceEEE
Q 038269 592 NATCSVGIL 600 (792)
Q Consensus 592 ~apCsVgIl 600 (792)
++||+|-|+
T Consensus 153 ~a~~pVlvv 161 (175)
T 2gm3_A 153 HAECPVMTI 161 (175)
T ss_dssp HCSSCEEEE
T ss_pred CCCCCEEEE
Confidence 999998654
No 20
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.77 E-value=9.6e-05 Score=70.94 Aligned_cols=151 Identities=11% Similarity=0.013 Sum_probs=84.1
Q ss_pred ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCccc-ccc-cc---cCCc-chhhhhhhhhHHHHHHHH
Q 038269 618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQR-RAA-TY---KDNT-AELEEEMKIDDECFAEFY 691 (792)
Q Consensus 618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~-~~~-~~---~~~~-~~~~~~~~~d~~~l~e~~ 691 (792)
..+|++++=|.++.+.|+++|.++++..+.+++++|++......... ... .+ .... ...+..++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999998643210000 000 00 0000 001122233445566664
Q ss_pred HhhcC-CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCce
Q 038269 692 ERQVA-EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRT 768 (792)
Q Consensus 692 ~~~~~-~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~ 768 (792)
+.... +-++.+ +..+..| +....|.+.++ ++||+|+|+++.. ++.+ -=+|-+-+-+... +++
T Consensus 85 ~~~~~~g~~~~~-~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~------~~~~----~~~Gsv~~~vl~~---~~~ 149 (170)
T 2dum_A 85 EEVKRAFRAKNV-RTIIRFG-IPWDEIVKVAEEENVSLIILPSRGKL------SLSH----EFLGSTVMRVLRK---TKK 149 (170)
T ss_dssp HHHHHHTTCSEE-EEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCC------C--T----TCCCHHHHHHHHH---CSS
T ss_pred HHHHHcCCceee-eeEEecC-ChHHHHHHHHHHcCCCEEEECCCCCC------cccc----ceechHHHHHHHh---CCC
Confidence 43211 223443 1122233 34444544443 7999999997531 2222 1267777777654 568
Q ss_pred eEEEEeeeccCCCCC
Q 038269 769 SVLIIKQHDFKGELD 783 (792)
Q Consensus 769 SvLvvqq~~~~~~~~ 783 (792)
.||||........||
T Consensus 150 PVlvv~~~~~~~~~~ 164 (170)
T 2dum_A 150 PVLIIKEVDENELAK 164 (170)
T ss_dssp CEEEECCCCCC----
T ss_pred CEEEEccCCcccccc
Confidence 999998654443333
No 21
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=97.77 E-value=9.9e-05 Score=68.69 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=82.8
Q ss_pred cceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269 617 ASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA 696 (792)
Q Consensus 617 ~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~ 696 (792)
...+|++++=|.++.+.|+++|.++++..+.+++++|+.+......... .. ......+..++..++.++++.+....
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPAL-DP--VLSELLDAEAAHAKDAMRQRQQFVAT 80 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGG-HH--HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccc-cc--ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3469999999999999999999999999999999999987543211000 00 00001122233445667776554322
Q ss_pred CCcE-EEEEEecCChHHHHHHHHh-hh--cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEE
Q 038269 697 EGHV-AYAEKHLANSSETFATLRS-LE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLI 772 (792)
Q Consensus 697 ~~~v-~y~e~~v~~~~e~~~~i~~-~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLv 772 (792)
..+ .+... +..| +....|.+ .+ .++||+|+|+++.. ++.+| =+|-+-+-+... +++.|||
T Consensus 81 -~g~~~~~~~-~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pVlv 144 (146)
T 3s3t_A 81 -TSAPNLKTE-ISYG-IPKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVDH---APCNVIV 144 (146)
T ss_dssp -SSCCCCEEE-EEEE-CHHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHHH---CSSEEEE
T ss_pred -cCCcceEEE-EecC-ChHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhcc---CCCCEEE
Confidence 123 22222 2233 33444444 43 57999999987531 12221 267777766654 5678998
Q ss_pred Ee
Q 038269 773 IK 774 (792)
Q Consensus 773 vq 774 (792)
|.
T Consensus 145 V~ 146 (146)
T 3s3t_A 145 IR 146 (146)
T ss_dssp EC
T ss_pred eC
Confidence 73
No 22
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.75 E-value=6.4e-05 Score=69.63 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=79.0
Q ss_pred eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeee-cccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269 446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIEL-TDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV 524 (792)
Q Consensus 446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 524 (792)
|||+++...++....++.+..++.. ....++++|+++- +...... . .... +....+..++..+.++.+.
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~-~------~~~~-~~~~~~~~~~~~~~l~~~~ 73 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTGL-I------DVNM-SSMQDRISTETQKALLDLA 73 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCCC-E------EHHH-HHHTTCCCCHHHHHHHHHH
T ss_pred eEEEEecCchhhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhhccc-c------ccch-HHHHHHHHHHHHHHHHHHH
Confidence 7999998888888888888777753 2357999999842 2211100 0 0000 0000001122223334443
Q ss_pred hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269 525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL 600 (792)
Q Consensus 525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl 600 (792)
+.. ++.+....... .+..+.|++.|++.++|+|++|.| +.. .. .++++-++|++++||+|-|+
T Consensus 74 ~~~--~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~-~~~----~~----~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 74 ESV--DYPISEKLSGS--GDLGQVLSDAIEQYDVDLLVTGHH-QDF----WS----KLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp HHS--SSCCCCEEEEE--ECHHHHHHHHHHHTTCCEEEEEEC-CCC----HH----HHHHHHHHHHTTCCSEEEEE
T ss_pred HHc--CCCceEEEEec--CCHHHHHHHHHHhcCCCEEEEeCC-Cch----hh----hhcchHHHHHhcCCCCEEEe
Confidence 322 23331111122 578999999999999999999988 532 21 15688899999999998654
No 23
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.72 E-value=0.02 Score=61.18 Aligned_cols=70 Identities=7% Similarity=0.040 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhCCChHHHHHHHHHhhhh-hHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhh
Q 038269 350 KVVGTVICGLMLGFHWPESVSLGLLLSAK-GHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNII 422 (792)
Q Consensus 350 K~l~~~l~~~~~~~~~re~~~lg~~l~~k-G~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~ 422 (792)
-+...+..++.+|.+.+|+..+++-.+.| ....+.++...+.. ++..--...+..+.+.++++.+.++.-
T Consensus 241 ~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~~~ 311 (332)
T 3zux_A 241 GYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATYWA 311 (332)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888999999999988844444 55677666655521 223334445566777777777776643
No 24
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=97.66 E-value=6.6e-05 Score=71.24 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=79.8
Q ss_pred cceeEEEEecc-CcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhc
Q 038269 617 ASLNVAVIFIG-GKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQV 695 (792)
Q Consensus 617 ~~~~v~v~f~G-G~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~ 695 (792)
...+|++++=| .+..+.|+++|.++++..+.+++++++.+..... ++..++..++.++++.+...
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~ 88 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT--------------KDEDIIEAKETLSWAVSIIR 88 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS--------------CHHHHHHHHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc--------------cHHHHHHHHHHHHHHHHHHH
Confidence 35689999999 9999999999999999999999999998643210 11122224445555533321
Q ss_pred C-CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEE
Q 038269 696 A-EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLI 772 (792)
Q Consensus 696 ~-~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLv 772 (792)
. +..+... ..+..| +..+.|.+.++ ++||+|+|+++.. ++.+ -=+|-+-+-+... +.+.|||
T Consensus 89 ~~g~~~~~~-~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~----~~lGSv~~~vl~~---a~~PVLv 153 (155)
T 3dlo_A 89 KEGAEGEEH-LLVRGK-EPPDDIVDFADEVDAIAIVIGIRKRS------PTGK----LIFGSVARDVILK---ANKPVIC 153 (155)
T ss_dssp HTTCCEEEE-EEESSS-CHHHHHHHHHHHTTCSEEEEECCEEC------TTSC----EECCHHHHHHHHH---CSSCEEE
T ss_pred hcCCCceEE-EEecCC-CHHHHHHHHHHHcCCCEEEECCCCCC------CCCC----EEeccHHHHHHHh---CCCCEEE
Confidence 1 2234322 223333 23344444433 7999999987531 1222 1267777776654 5678998
Q ss_pred Ee
Q 038269 773 IK 774 (792)
Q Consensus 773 vq 774 (792)
|.
T Consensus 154 Vr 155 (155)
T 3dlo_A 154 IK 155 (155)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 25
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=97.65 E-value=4.2e-05 Score=71.34 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=77.4
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccc-cccccCCcchhhhhhhhhHHHHHHHHHhhcC-
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRR-AATYKDNTAELEEEMKIDDECFAEFYERQVA- 696 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~- 696 (792)
.+|++++=|.++.+.|+++|.+++++.+.+++++|+.+......... ...........+..++..++.++++.+....
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL 82 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999986421000000 0000000000112223344555555433211
Q ss_pred CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 697 EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 697 ~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
+-++.-.+..+..| +....|.+.++ ++||+|+|+++.. .|.+ --+|-+-+-+... +++.||||
T Consensus 83 g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~---------~~~~-~~~Gs~~~~vl~~---~~~pVlvV 147 (147)
T 3hgm_A 83 GVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQGTN---------GDKS-LLLGSVAQRVAGS---AHCPVLVV 147 (147)
T ss_dssp TCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSCTT---------CCSC-CCCCHHHHHHHHH---CSSCEEEC
T ss_pred CCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCc---------cccc-eeeccHHHHHHhh---CCCCEEEC
Confidence 21220011222233 33344444433 7999999997531 1211 1257766666653 45788875
No 26
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.64 E-value=9.4e-05 Score=69.28 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=79.1
Q ss_pred ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccC-CcchhhhhhhhhHHHHHHHHHhhcC
Q 038269 618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKD-NTAELEEEMKIDDECFAEFYERQVA 696 (792)
Q Consensus 618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~e~~~~~~~ 696 (792)
..+|++++=|.++.+.|+++|.++++..+.+++++++.+............... .....+..++.-++.++++.++..
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 84 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG- 84 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 468999999999999999999999999999999999986432100000000000 001122233344566777755441
Q ss_pred CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269 697 EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK 774 (792)
Q Consensus 697 ~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq 774 (792)
.+.+. ..+..| +..+.|.+.++ ++||+|+|+++.. .|. --+|-+-+-+... +++.||||.
T Consensus 85 ~~~~~---~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~---------~~~--~~~Gs~~~~vl~~---~~~pVlvv~ 146 (150)
T 3tnj_A 85 IDPAH---RWLVWG-EPREEIIRIAEQENVDLIVVGSHGRH---------GLA--LLLGSTANSVLHY---AKCDVLAVR 146 (150)
T ss_dssp CCGGG---EEEEES-CHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEE
T ss_pred CCcce---EEEecC-CHHHHHHHHHHHcCCCEEEEecCCCC---------CcC--eEecchHHHHHHh---CCCCEEEEe
Confidence 12121 122223 23344444443 7999999987531 222 3367777766654 568999997
Q ss_pred ee
Q 038269 775 QH 776 (792)
Q Consensus 775 q~ 776 (792)
..
T Consensus 147 ~~ 148 (150)
T 3tnj_A 147 LR 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 27
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.48 E-value=0.00061 Score=62.64 Aligned_cols=129 Identities=7% Similarity=0.011 Sum_probs=77.1
Q ss_pred ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEe-ee-cccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269 445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMI-EL-TDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS 522 (792)
Q Consensus 445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLv-el-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 522 (792)
-|||+++...+.....++.+..++.. ....++++|++ +. +........ ...... ...+ ...+..++.++.++.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~l~~~~~ 79 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK--LGAELDILAVLEDVYNLERANVTF-GLPFPP-EIKE-ESKKRIERRLREVWE 79 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHHHHHHHH-CCCCCT-HHHH-HHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH--cCCeEEEEEEeccccccccccccc-CCCCCh-HHHH-HHHHHHHHHHHHHHH
Confidence 37999998888888888888888754 34689999998 63 110000000 000000 0000 111223333333333
Q ss_pred h-hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269 523 Y-VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI 599 (792)
Q Consensus 523 ~-~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI 599 (792)
+ .. ..+ .++.... . .+..+.|++.|++.++|+|+||.|.+ ++-++|++++||+|-|
T Consensus 80 ~~~~--~~~-~~~~~~~-~--g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 80 KLTG--STE-IPGVEYR-I--GPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHHS--CCC-CCCEEEE-C--SCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEE
T ss_pred Hhhc--cCC-cceEEEE-c--CCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEe
Confidence 2 11 222 3333332 2 67999999999999999999998843 3347999999999754
No 28
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.40 E-value=0.00021 Score=67.47 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=81.4
Q ss_pred cceeEEEEec--cCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhh
Q 038269 617 ASLNVAVIFI--GGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQ 694 (792)
Q Consensus 617 ~~~~v~v~f~--GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 694 (792)
...+|++++= |.++.+.|+++|.++++..+.+++++|+.+....... . .......+..++..++.++++.+..
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIF---D--SLTPSKIQAKRKHVEDVVAEYVQLA 88 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC---C--SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc---c--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999 9999999999999999999999999999865431100 0 0000111222333455666664432
Q ss_pred cC-CC-cEEEEEEecCChHHHHHHHHhh---hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCcee
Q 038269 695 VA-EG-HVAYAEKHLANSSETFATLRSL---EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTS 769 (792)
Q Consensus 695 ~~-~~-~v~y~e~~v~~~~e~~~~i~~~---~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~S 769 (792)
.. +- .+.+. +..+| +....|.+. ..++||+|+|+++.. .+. . =+|.+-+-+... +++.
T Consensus 89 ~~~g~~~~~~~--v~~~g-~~~~~I~~~~a~~~~~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~~---a~~P 151 (156)
T 3fg9_A 89 EQRGVNQVEPL--VYEGG-DVDDVILEQVIPEFKPDLLVTGADTEF---------PHS-K-IAGAIGPRLARK---APIS 151 (156)
T ss_dssp HHHTCSSEEEE--EEECS-CHHHHHHHTHHHHHCCSEEEEETTCCC---------TTS-S-SCSCHHHHHHHH---CSSE
T ss_pred HHcCCCceEEE--EEeCC-CHHHHHHHHHHHhcCCCEEEECCCCCC---------ccc-e-eecchHHHHHHh---CCCC
Confidence 11 11 23322 22213 233444443 356999999997641 232 2 378877777764 5679
Q ss_pred EEEEe
Q 038269 770 VLIIK 774 (792)
Q Consensus 770 vLvvq 774 (792)
||||.
T Consensus 152 VlvV~ 156 (156)
T 3fg9_A 152 VIVVR 156 (156)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99983
No 29
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.36 E-value=0.00075 Score=63.92 Aligned_cols=141 Identities=8% Similarity=0.034 Sum_probs=82.4
Q ss_pred ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecC-----CCCcccccccccC-Cc------chhhhhhhhhHH
Q 038269 618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDN-----SENPQRRAATYKD-NT------AELEEEMKIDDE 685 (792)
Q Consensus 618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~-----~~~~~~~~~~~~~-~~------~~~~~~~~~d~~ 685 (792)
..+|++++=|.++.+.|+++|.++++..+.+++++|+.+.. .... ...+.... .. ...+..++..++
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFS-LLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCcccccccccc-ccccccccccchhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998643 1000 00000000 00 001112233445
Q ss_pred HHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCC
Q 038269 686 CFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSD 763 (792)
Q Consensus 686 ~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d 763 (792)
.++++.+.... ..+.+..+ +..| +....|.+.++ ++||+|+|+++.. ++.+| =+|-+-+-+...
T Consensus 84 ~l~~~~~~~~~-~g~~~~~~-v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~- 149 (162)
T 1mjh_A 84 KMENIKKELED-VGFKVKDI-IVVG-IPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK- 149 (162)
T ss_dssp HHHHHHHHHHH-TTCEEEEE-EEEE-CHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH-
T ss_pred HHHHHHHHHHH-cCCceEEE-EcCC-CHHHHHHHHHHHcCCCEEEEcCCCCC------Cccce----EecchHHHHHHh-
Confidence 66666543221 22333222 2233 34444444433 6999999997531 22222 278887777764
Q ss_pred CCCceeEEEEee
Q 038269 764 FLVRTSVLIIKQ 775 (792)
Q Consensus 764 ~~~~~SvLvvqq 775 (792)
+++.||||..
T Consensus 150 --~~~pVlvv~~ 159 (162)
T 1mjh_A 150 --SNKPVLVVKR 159 (162)
T ss_dssp --CCSCEEEECC
T ss_pred --CCCCEEEEeC
Confidence 5689999964
No 30
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=97.36 E-value=0.00077 Score=62.25 Aligned_cols=136 Identities=11% Similarity=0.148 Sum_probs=75.8
Q ss_pred eeEEEEeccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269 619 LNVAVIFIGGKD--DREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA 696 (792)
Q Consensus 619 ~~v~v~f~GG~d--dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~ 696 (792)
++|++++=|.++ .+.|+++|.++++..+.+++++|+.+........ ...........+...+.-.+.++++.++...
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASL-GMAYTAELPGMDELREGSETQLKEIAKKFSI 80 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTSCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccc-cccccchhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999 9999999999999999999999998653211000 0000000000111111222334444332211
Q ss_pred C-CcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 697 E-GHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 697 ~-~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
. .++.+. +..| +....|.+.++ ++||+|+|+++ . |+.+| =+|-+-+-+... +++.||||
T Consensus 81 ~~~~v~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~------~~~~~----~~Gs~~~~v~~~---~~~pVlvv 142 (143)
T 3fdx_A 81 PEDRMHFH---VAEG-SPKDKILALAKSLPADLVIIASHR-P------DITTY----LLGSNAAAVVRH---AECSVLVV 142 (143)
T ss_dssp CGGGEEEE---EEES-CHHHHHHHHHHHTTCSEEEEESSC-T------TCCSC----SSCHHHHHHHHH---CSSEEEEE
T ss_pred CCCceEEE---EEec-ChHHHHHHHHHHhCCCEEEEeCCC-C------CCeee----eeccHHHHHHHh---CCCCEEEe
Confidence 1 123322 2233 34444555543 79999999983 1 12222 267777777664 56789987
No 31
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.32 E-value=0.00099 Score=61.19 Aligned_cols=131 Identities=13% Similarity=0.118 Sum_probs=77.6
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCC
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEG 698 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~ 698 (792)
.+|++++=|.++.+.|+++|.++++..+.+++++++.+...... .... .....+..++.-++.++++.++. +-
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~-~~~~~~~~~~~~~~~l~~~~~~~--g~ 75 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL----GEPF-FEEALRRRLERAEGVLEEARALT--GV 75 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHHH--CC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccc----cccc-hHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 58999999999999999999999999999999999985321000 0000 00001111223455666665432 22
Q ss_pred -cEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269 699 -HVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII 773 (792)
Q Consensus 699 -~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv 773 (792)
++.+. +..| +....|.+.++ ++||+|+|+++.. ++.+ -=+|-+-+-+... +++.||||
T Consensus 76 ~~~~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~~---~~~pVlvv 136 (137)
T 2z08_A 76 PKEDAL---LLEG-VPAEAILQAARAEKADLIVMGTRGLG------ALGS----LFLGSQSQRVVAE---APCPVLLV 136 (137)
T ss_dssp CGGGEE---EEES-SHHHHHHHHHHHTTCSEEEEESSCTT------CCSC----SSSCHHHHHHHHH---CSSCEEEE
T ss_pred CccEEE---EEec-CHHHHHHHHHHHcCCCEEEECCCCCc------hhhh----hhhccHHHHHHhc---CCCCEEEe
Confidence 33332 1223 34444444443 6999999997631 1222 1267777777664 56789987
No 32
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.24 E-value=0.00087 Score=70.25 Aligned_cols=133 Identities=14% Similarity=0.047 Sum_probs=78.9
Q ss_pred ceEEEEecCCCC-------hhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHH
Q 038269 445 LQILLCLHGSQN-------ITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEIT 517 (792)
Q Consensus 445 lrILvcv~~~~~-------~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 517 (792)
-|||+++...+. ....++.+..++.. ....++++|+++....... .+ .. + ...+..++..
T Consensus 135 ~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~--~~-------~~-~-~~~~~~~~~~ 201 (290)
T 3mt0_A 135 GKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL--AKATLHVISAHPSPMLSSA--DP-------TF-Q-LSETIEARYR 201 (290)
T ss_dssp CEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEEEC------------------CH-H-HHHHHHHHHH
T ss_pred CeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH--cCCeEEEEEEecCcccccc--Cc-------hh-H-HHHHHHHHHH
Confidence 489999976665 56677777776644 2367999999885432111 00 00 0 0001112222
Q ss_pred HHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCce
Q 038269 518 TAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSV 597 (792)
Q Consensus 518 ~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsV 597 (792)
+.++.+.++. ++......... .+..+.|++.|++.++|+|+||-|++....+ ..++++.++|++++||+|
T Consensus 202 ~~l~~~~~~~--g~~~~~~~v~~--g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~------~~~Gsv~~~vl~~~~~pV 271 (290)
T 3mt0_A 202 EACRTFQAEY--GFSDEQLHIEE--GPADVLIPRTAQKLDAVVTVIGTVARTGLSG------ALIGNTAEVVLDTLESDV 271 (290)
T ss_dssp HHHHHHHHHH--TCCTTTEEEEE--SCHHHHHHHHHHHHTCSEEEEECCSSCCGGG------CCSCHHHHHHHTTCSSEE
T ss_pred HHHHHHHHHc--CCCcceEEEec--cCHHHHHHHHHHhcCCCEEEECCCCCcCCcc------eecchHHHHHHhcCCCCE
Confidence 3333343321 12111111222 5789999999999999999999986644332 247788899999999998
Q ss_pred EEE
Q 038269 598 GIL 600 (792)
Q Consensus 598 gIl 600 (792)
-|+
T Consensus 272 Lvv 274 (290)
T 3mt0_A 272 LVL 274 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 33
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.22 E-value=0.0012 Score=62.99 Aligned_cols=139 Identities=18% Similarity=0.152 Sum_probs=78.5
Q ss_pred cceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEE--EeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhh
Q 038269 617 ASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVI--RFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQ 694 (792)
Q Consensus 617 ~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 694 (792)
...+|++++=|.+..+.|+++|.++++ .+.+++++ ++++......... .. .....+..++..++.++++.+..
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~ 90 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADI---LK-DESYKVTGTAPIYEILHDAKERA 90 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------CCTHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccc---cc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999999 99999999 8765322100000 00 00000112233455666664433
Q ss_pred cCCCcEE-EEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEE
Q 038269 695 VAEGHVA-YAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVL 771 (792)
Q Consensus 695 ~~~~~v~-y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvL 771 (792)
.. ..+. +... +..| +..+.|.+.+ .++||+|+|+++.. ++.+| =+|-+-+-+... +++.||
T Consensus 91 ~~-~gv~~v~~~-v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~---a~~PVl 154 (163)
T 1tq8_A 91 HN-AGAKNVEER-PIVG-APVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSRR---AKVDVL 154 (163)
T ss_dssp HT-TTCCEEEEE-EECS-SHHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH---TTCEEE
T ss_pred HH-cCCCeEEEE-EecC-CHHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHHh---CCCCEE
Confidence 22 1222 2222 2234 2344444433 56999999997532 12221 267777766654 568999
Q ss_pred EEeee
Q 038269 772 IIKQH 776 (792)
Q Consensus 772 vvqq~ 776 (792)
||...
T Consensus 155 vV~~~ 159 (163)
T 1tq8_A 155 IVHTT 159 (163)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 99754
No 34
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.20 E-value=0.0017 Score=59.71 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=76.5
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCC-CcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCC
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSE-NPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAE 697 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~ 697 (792)
.+|++++=|.++.+.|+++|.++++..+.+++++++.+.... ....... . .....+..++.-++.++++.++. +
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~--~ 77 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDV--N-MSSMQDRISTETQKALLDLAESV--D 77 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEH--H-HHHHTTCCCCHHHHHHHHHHHHS--S
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhcccccc--c-hHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 589999999999999999999999999999999999843110 0000000 0 00000111122345666665443 2
Q ss_pred CcEEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEee
Q 038269 698 GHVAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQ 775 (792)
Q Consensus 698 ~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq 775 (792)
-.+ .+..+..| +....|.+. ..++||+|+|++ .. .|.. +|-+-+-+... +++.||||..
T Consensus 78 ~~~--~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~-~~---------~~~~---lgs~~~~vl~~---~~~pVlvv~~ 138 (141)
T 1jmv_A 78 YPI--SEKLSGSG-DLGQVLSDAIEQYDVDLLVTGHH-QD---------FWSK---LMSSTRQVMNT---IKIDMLVVPL 138 (141)
T ss_dssp SCC--CCEEEEEE-CHHHHHHHHHHHTTCCEEEEEEC-CC---------CHHH---HHHHHHHHHTT---CCSEEEEEEC
T ss_pred CCc--eEEEEecC-CHHHHHHHHHHhcCCCEEEEeCC-Cc---------hhhh---hcchHHHHHhc---CCCCEEEeeC
Confidence 112 11222223 233333333 235999999987 31 1212 56666666654 5689999975
Q ss_pred e
Q 038269 776 H 776 (792)
Q Consensus 776 ~ 776 (792)
.
T Consensus 139 ~ 139 (141)
T 1jmv_A 139 R 139 (141)
T ss_dssp C
T ss_pred C
Confidence 3
No 35
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.18 E-value=0.00068 Score=71.99 Aligned_cols=144 Identities=11% Similarity=0.037 Sum_probs=83.1
Q ss_pred ceEEEEecCCCC-------hhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHH
Q 038269 445 LQILLCLHGSQN-------ITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEIT 517 (792)
Q Consensus 445 lrILvcv~~~~~-------~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 517 (792)
-|||+++...+. -...++.+..+.........++++|+++........-.+ .... +....+..++..
T Consensus 157 ~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~ 230 (319)
T 3olq_A 157 GTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELP-----DFDP-NLYNNALRGQHL 230 (319)
T ss_dssp CEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCT-----TCCH-HHHHHHHHHHHH
T ss_pred CeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCC-----cccH-HHHHHHHHHHHH
Confidence 489999976553 345555555554322002469999998865432110000 0000 000111123333
Q ss_pred HHHHHhhhccCc-ceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCc
Q 038269 518 TAVQSYVDENGG-GITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCS 596 (792)
Q Consensus 518 ~af~~~~~~~~~-~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCs 596 (792)
+.++.+.++.+. .+..+ ... .+..+.|++.|++.++|+|+||-|++....+ ..++++.++|++++||+
T Consensus 231 ~~l~~~~~~~~~~~~~~~---v~~--g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~------~~~Gsv~~~vl~~~~~p 299 (319)
T 3olq_A 231 IAMKELRQKFSIPEEKTH---VKE--GLPEQVIPQVCEELNAGIVVLGILGRTGLSA------AFLGNTAEQLIDHIKCD 299 (319)
T ss_dssp HHHHHHHHHTTCCGGGEE---EEE--SCHHHHHHHHHHHTTEEEEEEECCSCCSTHH------HHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHhCCCcccEE---Eec--CCcHHHHHHHHHHhCCCEEEEeccCccCCcc------ccccHHHHHHHhhCCCC
Confidence 445455443221 11111 122 5789999999999999999999986644322 24788999999999999
Q ss_pred eEEEecCCC
Q 038269 597 VGILVDRGF 605 (792)
Q Consensus 597 VgIlVdrg~ 605 (792)
|-|+-.+|+
T Consensus 300 VLvv~~~~~ 308 (319)
T 3olq_A 300 LLAIKPDGF 308 (319)
T ss_dssp EEEECCTTC
T ss_pred EEEECCCCC
Confidence 876645554
No 36
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=96.96 E-value=0.003 Score=57.87 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=35.9
Q ss_pred ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 038269 618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFL 655 (792)
Q Consensus 618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~ 655 (792)
..+|++++=|.++.+.|+++|.++++..+.+++++++.
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 41 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVL 41 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 46899999999999999999999999999999999997
No 37
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=96.85 E-value=0.0057 Score=58.62 Aligned_cols=143 Identities=9% Similarity=0.104 Sum_probs=75.7
Q ss_pred ceeEEEEeccCc---------ChHHHHHHHHHHh-cC--CCeEEEEEEeeecCCCCcccccccccCCcch-hh---hhhh
Q 038269 618 SLNVAVIFIGGK---------DDREALAYASRVA-RH--PAVKLTVIRFLLDNSENPQRRAATYKDNTAE-LE---EEMK 681 (792)
Q Consensus 618 ~~~v~v~f~GG~---------ddreAL~~a~rma-~~--~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~ 681 (792)
..+|++++=|.+ ..+.|+++|.+++ +. .+.+++++|+.......-.. .........+ ++ ..++
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDD-VDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-----------CCCCSHHHHHHHTTSHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccc-cccccCCHHHHHHHHHHHHH
Confidence 468999999999 8899999999986 44 69999999997432110000 0000000000 01 1112
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhh
Q 038269 682 IDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVL 759 (792)
Q Consensus 682 ~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~l 759 (792)
..++.++++.+.... ..+.+.-. +..| +....|.+.++ ++||+|+|+++.. |+.+| =+|-+-+-+
T Consensus 84 ~~~~~l~~~~~~~~~-~g~~~~~~-v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~------~~~~~----~~Gsva~~v 150 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE-IGVGCEAW-IKTG-DPKDVICQEVKRVRPDFLVVGSRGLG------RFQKV----FVGTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHHH-HTCEEEEE-EEES-CHHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCceEEE-EecC-CHHHHHHHHHHHhCCCEEEEeCCCCC------hhhhh----hcCchHHHH
Confidence 234566666443211 12333222 2233 23444444433 6999999987531 22222 267777766
Q ss_pred hcCCCCCceeEEEEeeec
Q 038269 760 SGSDFLVRTSVLIIKQHD 777 (792)
Q Consensus 760 as~d~~~~~SvLvvqq~~ 777 (792)
... +++.||||....
T Consensus 151 l~~---a~~pVlvv~~~~ 165 (175)
T 2gm3_A 151 VKH---AECPVMTIKRNA 165 (175)
T ss_dssp HHH---CSSCEEEEECCG
T ss_pred HhC---CCCCEEEEcCCc
Confidence 654 568999998654
No 38
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=96.85 E-value=0.002 Score=67.54 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=78.9
Q ss_pred cceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269 444 QLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY 523 (792)
Q Consensus 444 elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 523 (792)
.-||++++...+.....++.+..+... ....++++|+.+-.. .++.++.+..+
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~-------------------------~~~~l~~~~~~ 222 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKK--TGGELHIIHVSEDGD-------------------------KTADLRVMEEV 222 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSC-------------------------CHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhh--cCCEEEEEEEccCch-------------------------HHHHHHHHHHH
Confidence 358999998777777777777777643 235799999976432 01111222222
Q ss_pred hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269 524 VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL 600 (792)
Q Consensus 524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl 600 (792)
-+. .++.++... .. .+..+.|++.|++.++|+|+||.+++....+ ..++++.+++++++||+|-|+
T Consensus 223 l~~--~~~~~~~~~-~~--g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~------~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 223 IGA--EGIEVHVHI-ES--GTPHKAILAKREEINATTIFMGSRGAGSVMT------MILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHH--TTCCEEEEE-EC--SCHHHHHHHHHHHTTCSEEEEECCCCSCHHH------HHHHCHHHHHHHHCSSCEEEE
T ss_pred HHH--cCCcEEEEE-ec--CCHHHHHHHHHHhcCcCEEEEeCCCCCCccc------eeeCcHHHHHHhcCCCCEEEE
Confidence 221 134455433 23 5899999999999999999999986543321 236778899999999998553
No 39
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=96.78 E-value=0.0038 Score=65.96 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=83.5
Q ss_pred ccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhc
Q 038269 616 AASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQV 695 (792)
Q Consensus 616 ~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~ 695 (792)
....+|+++.-|.++.+.|+++|.++|++.+.++++++++......-. . ........+..++..++.++++++...
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWL--E--VPLPPGVLRWQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTT--C--CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccc--c--CCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999853211000 0 000000111122223444555433211
Q ss_pred C----CCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEE
Q 038269 696 A----EGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVL 771 (792)
Q Consensus 696 ~----~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvL 771 (792)
. ...+.+.-++ ..| +....|.+.++++||+|+|+++.. .|.+ .=+|-.-+-+... +++.||
T Consensus 93 ~~~~~~~~~~~~~~~-~~g-~~~~~I~~~a~~~DliV~G~~g~~---------~~~~-~~~Gs~~~~vl~~---~~~PVl 157 (309)
T 3cis_A 93 QASLRAGPPTVHSEI-VPA-AAVPTLVDMSKDAVLMVVGCLGSG---------RWPG-RLLGSVSSGLLRH---AHCPVV 157 (309)
T ss_dssp HHCSSSCCSCEEEEE-ESS-CHHHHHHHHGGGEEEEEEESSCTT---------CCTT-CCSCHHHHHHHHH---CSSCEE
T ss_pred HhcccCCCceEEEEE-ecC-CHHHHHHHHhcCCCEEEECCCCCc---------cccc-cccCcHHHHHHHh---CCCCEE
Confidence 1 0122322222 233 344555555668999999997531 1221 2267777777764 578999
Q ss_pred EEeeec
Q 038269 772 IIKQHD 777 (792)
Q Consensus 772 vvqq~~ 777 (792)
||....
T Consensus 158 vv~~~~ 163 (309)
T 3cis_A 158 IIHDED 163 (309)
T ss_dssp EECTTC
T ss_pred EEcCCc
Confidence 998653
No 40
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=96.72 E-value=0.0051 Score=63.37 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=80.9
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcch-------hhhhhhhhHHHHHHHHH
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAE-------LEEEMKIDDECFAEFYE 692 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~l~e~~~ 692 (792)
+|++++=|.+..+.|+++|.++|++.+.+++++|+.+................... .+..++.-++.++++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQ 81 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999753210000000000000000 11112233456666644
Q ss_pred hhcC-CCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEE
Q 038269 693 RQVA-EGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVL 771 (792)
Q Consensus 693 ~~~~-~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvL 771 (792)
.... +-++.+. +..| +....|.+.+.++||+|+|+++... ++.+ --+|-+-+-+... +++.||
T Consensus 82 ~~~~~g~~~~~~---~~~g-~~~~~I~~~~~~~dliV~G~~g~~~-----~~~~----~~~Gs~~~~v~~~---a~~PVl 145 (268)
T 3ab8_A 82 SALAAGVAVEAV---LEEG-VPHEAILRRARAADLLVLGRSGEAH-----GDGF----GGLGSTADRVLRA---SPVPVL 145 (268)
T ss_dssp HHHHTTCCEEEE---EEEE-CHHHHHHHHHTTCSEEEEESSCTTS-----CTTC----CSCCHHHHHHHHH---CSSCEE
T ss_pred HHHhCCCCeEEE---EecC-CHHHHHHhhccCCCEEEEeccCCCc-----cccc----cccchhHHHHHHh---CCCCEE
Confidence 3211 2233332 2233 2334444447789999999875310 2222 2267777777754 568999
Q ss_pred EEeee
Q 038269 772 IIKQH 776 (792)
Q Consensus 772 vvqq~ 776 (792)
||...
T Consensus 146 vv~~~ 150 (268)
T 3ab8_A 146 LAPGE 150 (268)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 99864
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=94.15 E-value=0.57 Score=48.07 Aligned_cols=221 Identities=13% Similarity=0.109 Sum_probs=130.7
Q ss_pred cceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269 444 QLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY 523 (792)
Q Consensus 444 elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 523 (792)
.-++|+....|..-..++.++..+...+. .+.+.++..-.. .+ . ..+++ .+++.|
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p~~~--~~-----------------~--l~~ql-~~l~~~ 74 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAGNTD--KE-----------------N--LLSQL-PSISEG 74 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC---C--TT-----------------C--HHHHH-HHHHHH
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEccCCC--cc-----------------H--HHHHH-HHHHHH
Confidence 45899999999999999999999986643 566666632111 10 0 01222 455555
Q ss_pred hhccCcceEEEEeEeecCCCChhHHHHHHHhhc-----CCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceE
Q 038269 524 VDENGGGITLKRMLALSTFSGMPQDICILAEDL-----MVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVG 598 (792)
Q Consensus 524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~-----~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVg 598 (792)
-++ .++..-..+..+ .+.++++-+..+.. +++.|+|+|..+.... ..++.+.++.. ++--.|-
T Consensus 75 l~~--r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~-------~~y~~~i~~~~-~~~~nVl 142 (294)
T 3g40_A 75 FQE--EGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRDRD-------EEIREIIRKAS-MYRMGVL 142 (294)
T ss_dssp HHH--TTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGH-------HHHHHHHHHHH-HTTCEEE
T ss_pred HHh--CCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhh-------HHHHHHHHHHH-HhCceEE
Confidence 442 235544444444 67889999988875 7899999997543321 35777775554 4455554
Q ss_pred EEecCCCCCccccccccccceeEEEEecc--------C--cChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCccccccc
Q 038269 599 ILVDRGFGSIENISRSQAASLNVAVIFIG--------G--KDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAAT 668 (792)
Q Consensus 599 IlVdrg~~~~~~~~~~~~~~~~v~v~f~G--------G--~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~ 668 (792)
||-+.... .....++|=+=.-| | ..-..++-+|-.+..+.++++.+++++++
T Consensus 143 il~~~~~~-------~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d----------- 204 (294)
T 3g40_A 143 LFSKHPQA-------GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT----------- 204 (294)
T ss_dssp EEECCTTT-------TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS-----------
T ss_pred EEecCCcc-------CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC-----------
Confidence 54322111 01112344333222 2 24466888999999999999999999863
Q ss_pred ccCCcchhhhhhhhhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCC
Q 038269 669 YKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGER 734 (792)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~ 734 (792)
|.+++.-+++++++.+...-.... | +|. .+..+.+++. .+-||+++|=...
T Consensus 205 --------e~a~~~a~~~l~~Lv~~~Ri~a~~-~---vv~--~~F~~il~~s-~~ADL~flGl~~~ 255 (294)
T 3g40_A 205 --------AIQAQAAENFLQSLAELARIPNVK-M---QVL--RENPIKSSKL-PFASLHIFSLDPN 255 (294)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTCCSCE-E---EEE--SSCTTTSSSC-CCCSEEEEECCSS
T ss_pred --------HHHHHHHHHHHHHHHHHhcCCceE-E---Eec--CchHHHHhhC-cCCCEEEEcCCCC
Confidence 344555677888886554222222 2 222 3455556774 6699999998654
No 42
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=70.76 E-value=38 Score=35.52 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=66.5
Q ss_pred HHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhC
Q 038269 283 FMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLG 362 (792)
Q Consensus 283 fvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~ 362 (792)
.++|...|..... ++.. ....+++.+...|++++++.+.. ....+.......+.-++..++..+..++.++
T Consensus 28 ~~lg~~~P~~~~~-------~~~~-i~~~l~~~mf~~G~~l~~~~l~~-~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~ 98 (332)
T 3zux_A 28 AAAAFFAPDTFKW-------AGPY-IPWLLGIIMFGMGLTLKPSDFDI-LFKHPKVVIIGVIAQFAIMPATAWCLSKLLN 98 (332)
T ss_dssp HHHHHHCGGGTGG-------GGGG-HHHHHHHHHHHHHHHCCGGGGHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcchhhhh-------hHHH-HHHHHHHHHHHHHhCCCHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3666667753211 2222 23466677788899999876641 1234444444455566667777777777777
Q ss_pred CChHHHHHHHHH-hhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHh
Q 038269 363 FHWPESVSLGLL-LSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNI 421 (792)
Q Consensus 363 ~~~re~~~lg~~-l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l 421 (792)
.+.....-+-+. ..|-|..+.+....+. | =.+-......++.+++.+++|.++.++
T Consensus 99 l~~~~~~Glil~~~~P~~~~s~v~t~~a~--G-d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 99 LPAEIAVGVILVGCCPGGTASNVMTYLAR--G-NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp CCHHHHHHHHHHHHSCCCTHHHHHHHHTT--C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhcCCchhHHHHHHHHhC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765333222222 2445555555433322 1 112223333445555555666666554
No 43
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=60.81 E-value=0.55 Score=31.61 Aligned_cols=27 Identities=11% Similarity=0.269 Sum_probs=23.7
Q ss_pred HHHHHHhhhhCchhhHHHHHHhhhcCC
Q 038269 265 VAVCSCSPFYGYSPILSAFMAGIFFPS 291 (792)
Q Consensus 265 l~~~~~ae~~G~~~~lgafvaGl~l~~ 291 (792)
++++.++|.+++|++++.+.+|+.+.+
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhh
Confidence 345678999999999999999999876
No 44
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=58.74 E-value=21 Score=36.08 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=55.2
Q ss_pred eccCcChHHHHHHHHHHhcCCCe--EEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCcEEE
Q 038269 625 FIGGKDDREALAYASRVARHPAV--KLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAY 702 (792)
Q Consensus 625 f~GG~ddreAL~~a~rma~~~~v--~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~y 702 (792)
+.=.|.|.+||+.|.|+.+. +. .++++-+= .+ . .++.+++-.. ..-+++..
T Consensus 36 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G--~~-----------------~-----a~~~lr~ala--~GaD~vi~ 88 (255)
T 1efv_B 36 HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCG--PA-----------------Q-----CQETIRTALA--MGADRGIH 88 (255)
T ss_dssp EEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEE--ST-----------------T-----HHHHHHHHHH--HTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeC--Ch-----------------h-----HHHHHHHHHh--cCCCEEEE
Confidence 33368999999999999976 54 78877441 11 0 2234444322 12244544
Q ss_pred EE-Ee----cCChHHHHHHHHhh--hcCccEEEEecCCC-----CCcccccCCccc
Q 038269 703 AE-KH----LANSSETFATLRSL--EGQYALIIVGRGER-----ANSILTVGMNDW 746 (792)
Q Consensus 703 ~e-~~----v~~~~e~~~~i~~~--~~~~dL~iVGr~~~-----~~s~~~~gl~~w 746 (792)
.+ -- --|...+..+|.+. +.+||+++.|+... .-.|++..+-+|
T Consensus 89 v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 89 VEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred EecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 43 11 12344455555555 23599999999762 235666777776
No 45
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=58.02 E-value=21 Score=35.93 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=54.6
Q ss_pred CcChHHHHHHHHHHhcCCCe--EEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCcEEEEE-
Q 038269 628 GKDDREALAYASRVARHPAV--KLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAE- 704 (792)
Q Consensus 628 G~ddreAL~~a~rma~~~~v--~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~y~e- 704 (792)
.|.|.+|++.|.|+.+. +. +++++-+= .+ . .++.+++-.. ..-+++...+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G--~~-----------------~-----a~~~lr~ala--~GaD~vi~v~~ 88 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIG--VK-----------------Q-----AAETLRTALA--MGADRAILVVA 88 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEE--SG-----------------G-----GHHHHHHHHH--HTCSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeC--Ch-----------------h-----HHHHHHHHHh--cCCCEEEEEec
Confidence 68899999999999976 55 78877441 11 0 2234444322 1224554444
Q ss_pred -Eec---CChHHHHHHHHhh--hcCccEEEEecCCC-----CCcccccCCccc
Q 038269 705 -KHL---ANSSETFATLRSL--EGQYALIIVGRGER-----ANSILTVGMNDW 746 (792)
Q Consensus 705 -~~v---~~~~e~~~~i~~~--~~~~dL~iVGr~~~-----~~s~~~~gl~~w 746 (792)
... -+...+..+|.+. +.+||+++.|+... .-.|++..+-+|
T Consensus 89 d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 89 ADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp CSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred ChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 111 2344555556555 24599999999762 235666766676
No 46
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=56.56 E-value=15 Score=37.24 Aligned_cols=97 Identities=10% Similarity=0.129 Sum_probs=55.5
Q ss_pred EeccCcChHHHHHHHHHHhcCCCe--EEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCcEE
Q 038269 624 IFIGGKDDREALAYASRVARHPAV--KLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVA 701 (792)
Q Consensus 624 ~f~GG~ddreAL~~a~rma~~~~v--~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~ 701 (792)
+..=.|.|.+||+.|.|+++..+. .++++.+ ... . .++.+++... ..-+++.
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~--G~~-----------------~-----~~~~lr~ala--~GaD~vi 85 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSV--GPD-----------------R-----VDESLRKCLA--KGADRAV 85 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEE--SCG-----------------G-----GHHHHHHHHH--TTCSEEE
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEe--Cch-----------------h-----HHHHHHHHHh--cCCCEEE
Confidence 443468999999999999875444 7777744 111 0 2334444322 1224443
Q ss_pred EEEEec---CChHHHHHHHHhhh--cCccEEEEecCCC-----CCcccccCCccc
Q 038269 702 YAEKHL---ANSSETFATLRSLE--GQYALIIVGRGER-----ANSILTVGMNDW 746 (792)
Q Consensus 702 y~e~~v---~~~~e~~~~i~~~~--~~~dL~iVGr~~~-----~~s~~~~gl~~w 746 (792)
..+--- -+...+..+|.+.. .+||+++.|+... .-.|++..+-+|
T Consensus 86 ~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 86 RVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp EECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred EEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 333111 13344555565552 2599999999762 235666666666
No 47
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=54.43 E-value=4 Score=27.36 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=22.4
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcCC
Q 038269 148 AITLSFTLAGSGSHILTRVITNLKI 172 (792)
Q Consensus 148 al~lg~~ls~Ts~~vv~~iL~el~l 172 (792)
++++|+++|+|++..+..++++++.
T Consensus 6 ~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 6 NLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHccCCChHHHHHHHHHcCC
Confidence 5788999999999999999999885
No 48
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=47.28 E-value=43 Score=28.33 Aligned_cols=57 Identities=11% Similarity=-0.028 Sum_probs=42.5
Q ss_pred CChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecC
Q 038269 543 SGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDR 603 (792)
Q Consensus 543 ~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdr 603 (792)
+...+.|.+++++++++.+++|+-++ .||+........+.+-+++-++ +.+| .++|-
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~--mdGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DE 93 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLR--TDLKESAQAGKVLPLVEALRAR-GVEV-ELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCC--CCSSSCCCSSTTHHHHHHHHHT-TCEE-EEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccC--CCCCcCHHHHHHHHHHHHHhcC-CCCE-EEECC
Confidence 34567888999999999999998754 3466555555677777777776 8887 77875
No 49
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=44.53 E-value=1.1e+02 Score=29.18 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=82.2
Q ss_pred EeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCCCCccccccc
Q 038269 535 RMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRS 614 (792)
Q Consensus 535 ~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~~~~~~~~~~ 614 (792)
+...++||..|.+-+-+.+.+...++-+.- |.++.. . ..-++. +..|+ |++.||.. .... +
T Consensus 6 ~I~~iapy~~l~~~~~~i~~e~~~~i~i~~--------~~l~~~---v-~~a~~~--~~~~d--VIISRGgt--a~~l-r 66 (196)
T 2q5c_A 6 KIALISQNENLLNLFPKLALEKNFIPITKT--------ASLTRA---S-KIAFGL--QDEVD--AIISRGAT--SDYI-K 66 (196)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCEEEEEE--------CCHHHH---H-HHHHHH--TTTCS--EEEEEHHH--HHHH-H
T ss_pred cEEEEEccHHHHHHHHHHHhhhCCceEEEE--------CCHHHH---H-HHHHHh--cCCCe--EEEECChH--HHHH-H
Confidence 567788999999877788887755543321 222211 1 112233 45566 77999832 1222 1
Q ss_pred cccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhh
Q 038269 615 QAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQ 694 (792)
Q Consensus 615 ~~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 694 (792)
.....-|.-+-..|.|==.||..|++..+ ++-++-|- +.. -+-+.+.++-
T Consensus 67 ~~~~iPVV~I~~s~~Dil~al~~a~~~~~----kIavvg~~---~~~--------------------~~~~~~~~ll--- 116 (196)
T 2q5c_A 67 KSVSIPSISIKVTRFDTMRAVYNAKRFGN----ELALIAYK---HSI--------------------VDKHEIEAML--- 116 (196)
T ss_dssp TTCSSCEEEECCCHHHHHHHHHHHGGGCS----EEEEEEES---SCS--------------------SCHHHHHHHH---
T ss_pred HhCCCCEEEEcCCHhHHHHHHHHHHhhCC----cEEEEeCc---chh--------------------hHHHHHHHHh---
Confidence 22234566666778898999988887543 77777662 110 0222344431
Q ss_pred cCCCcEEEEEEecCChHHHHHHHHhhh-cCccEEE
Q 038269 695 VAEGHVAYAEKHLANSSETFATLRSLE-GQYALII 728 (792)
Q Consensus 695 ~~~~~v~y~e~~v~~~~e~~~~i~~~~-~~~dL~i 728 (792)
+ +......+++.+|....++++. +++|.+|
T Consensus 117 --~--~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV 147 (196)
T 2q5c_A 117 --G--VKIKEFLFSSEDEITTLISKVKTENIKIVV 147 (196)
T ss_dssp --T--CEEEEEEECSGGGHHHHHHHHHHTTCCEEE
T ss_pred --C--CceEEEEeCCHHHHHHHHHHHHHCCCeEEE
Confidence 1 2345566678888888888884 4588744
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=40.98 E-value=98 Score=31.89 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=54.8
Q ss_pred eeEEEEeccCcChHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCCCCcccccccccCCcchhhhhh
Q 038269 619 LNVAVIFIGGKDDREALAYASRVA-R-----------------HPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEM 680 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (792)
.++++-|.||+|+--.|.++.+.. + .++..+.++++... .+-
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg--------------------~~f 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQE--------------------ETF 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCT--------------------TCC
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCC--------------------CCC
Confidence 378999999999999999887763 1 13455666655321 122
Q ss_pred hhhHHHHHHHHHhhcCCCcEEEEEEecC-----ChHHHHHHHHhhhcCccEEEEecCCCC
Q 038269 681 KIDDECFAEFYERQVAEGHVAYAEKHLA-----NSSETFATLRSLEGQYALIIVGRGERA 735 (792)
Q Consensus 681 ~~d~~~l~e~~~~~~~~~~v~y~e~~v~-----~~~e~~~~i~~~~~~~dL~iVGr~~~~ 735 (792)
..+.++++++.++.. +.......+ .-.+......+.....+.+++|.|++.
T Consensus 114 pet~~fv~~~~~~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 114 PTLENFVLETSERYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HHHHHHHHHHHHHTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HHHHHHHHHHHHHcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 336678888866541 222211111 122333333333445789999998864
No 51
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=35.11 E-value=37 Score=35.49 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=27.9
Q ss_pred eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 038269 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 654 (792)
++++-|.||+|+--.|.++.+.....+..+.++++
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~v 82 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHV 82 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEE
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEE
Confidence 78899999999999999998887644455566665
No 52
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=33.48 E-value=1.4e+02 Score=30.81 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=50.6
Q ss_pred eEEEEeccCcChHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhh
Q 038269 620 NVAVIFIGGKDDREALAYASRVA-R-----------------HPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMK 681 (792)
Q Consensus 620 ~v~v~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (792)
++++-|.||+|+--.|.++.+-- + .|...+.|+.+-.. .+-.
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG--------------------~~Fp 119 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHD--------------------DTFK 119 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCT--------------------TCCH
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCC--------------------CCCH
Confidence 68899999999999999987742 1 12245556644211 1111
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEEEecCC---hHHHHHHHHhhhcCccEEEEecCCC
Q 038269 682 IDDECFAEFYERQVAEGHVAYAEKHLAN---SSETFATLRSLEGQYALIIVGRGER 734 (792)
Q Consensus 682 ~d~~~l~e~~~~~~~~~~v~y~e~~v~~---~~e~~~~i~~~~~~~dL~iVGr~~~ 734 (792)
-..+++++..++.. +.-....... -.+....+++....+|.++.|+|++
T Consensus 120 ET~ef~d~~~~~yg----L~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 120 TLENFIEETSLRYS----LSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp HHHHHHHHHHHHTT----EEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred HHHHHHHHHHHHhC----CcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 24567777766541 2211111111 1233344555555699999999987
No 53
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=28.61 E-value=1.1e+02 Score=33.42 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=44.0
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhh
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQ 694 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 694 (792)
.+|+|-+.||+|.--+|.++.++.+..+.++.++|+-..-. ..+...|.++++++.++.
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr-----------------g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR-----------------GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC-----------------THHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC-----------------ccccHHHHHHHHHHHHHc
Confidence 57999999999999999999999888888999998843211 011223667888886654
No 54
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=27.29 E-value=74 Score=29.11 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=41.0
Q ss_pred CCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecC
Q 038269 542 FSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDR 603 (792)
Q Consensus 542 ~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdr 603 (792)
.....+.|.+++++.+++.+++|.-. ..||+-.......|.+-..+.++.+++| ++||-
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~--~~nGt~~~~~~~ar~f~~~L~~~~~lpV-~~vDE 98 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPK--NMNGTVGPRGEASQTFAKVLETTYNVPV-VLWDE 98 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCC--CBTTBCCHHHHHHHHHHHHHHHHHCSCE-EEECC
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeee--cCCcchhHHHHHHHHHHHHHHHhhCCCE-EEecC
Confidence 46688999999999999999999764 2345432222224566667766668888 66775
No 55
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=25.96 E-value=1.1e+02 Score=33.23 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=33.0
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcC-CCeEEEEEEee
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARH-PAVKLTVIRFL 655 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~-~~v~ltv~r~~ 655 (792)
.+|+|-+.||+|.--.|.++.++.+. .+.++.++|+-
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvd 51 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVH 51 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEEC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence 58999999999999999999988877 88999999884
No 56
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=24.65 E-value=1e+02 Score=31.84 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=31.5
Q ss_pred eeEEEEeccCcChHHHHHHHHHHhcCCCeE-EEEEEee
Q 038269 619 LNVAVIFIGGKDDREALAYASRVARHPAVK-LTVIRFL 655 (792)
Q Consensus 619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~-ltv~r~~ 655 (792)
.+|++-+.||+|.--.|.++.+..+..+.+ +.++++-
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd 62 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFN 62 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEE
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 589999999999999999998887766777 8888774
No 57
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.90 E-value=72 Score=28.80 Aligned_cols=69 Identities=19% Similarity=0.059 Sum_probs=45.2
Q ss_pred EEEEeEeec--CCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecC
Q 038269 532 TLKRMLALS--TFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDR 603 (792)
Q Consensus 532 ~v~~~t~vs--~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdr 603 (792)
..+|...+. ....-.+.|..++++.+++.|++|.-++ .||+........+.+-+++-++-+.+| .++|-
T Consensus 26 ~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~--mdGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DE 96 (138)
T 1nu0_A 26 TARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN--MDGTEQPLTARARKFANRIHGRFGVEV-KLHDE 96 (138)
T ss_dssp EEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEEC--TTSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEE
T ss_pred EEeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEecccC--CCcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcC
Confidence 444444442 2234578999999999999999997654 345543333345666666666667777 77875
No 58
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=22.66 E-value=1.6e+02 Score=28.88 Aligned_cols=148 Identities=15% Similarity=0.158 Sum_probs=79.0
Q ss_pred EEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCCCCccccc
Q 038269 533 LKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENIS 612 (792)
Q Consensus 533 v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~~~~~~~~ 612 (792)
..+...+.||..|.+-.-+.+.+.....-|-.+. +.++.. . ...++.+++-.|+ |++.||.. ....
T Consensus 12 m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~------~~le~a---v-~~a~~~~~~~~~d--VIISRGgt--a~~L 77 (225)
T 2pju_A 12 DKPVIWTVSVTRLFELFRDISLEFDHLANITPIQ------LGFEKA---V-TYIRKKLANERCD--AIIAAGSN--GAYL 77 (225)
T ss_dssp -CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEEC------CCHHHH---H-HHHHHHTTTSCCS--EEEEEHHH--HHHH
T ss_pred CCCEEEEEchHHHHHHHHHHHHhhCCCceEEEec------CcHHHH---H-HHHHHHHhcCCCe--EEEeCChH--HHHH
Confidence 3477788888888875555555544322222211 222111 1 1123444444477 77899832 1111
Q ss_pred cccccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHH
Q 038269 613 RSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYE 692 (792)
Q Consensus 613 ~~~~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~ 692 (792)
+.....-|.-+-..|.|==.||..|++..+ ++-++-|- +.. -+-+.+.++ -
T Consensus 78 -r~~~~iPVV~I~vs~~Dil~aL~~a~~~~~----kIavVg~~---~~~--------------------~~~~~i~~l-l 128 (225)
T 2pju_A 78 -KSRLSVPVILIKPSGYDVLQFLAKAGKLTS----SIGVVTYQ---ETI--------------------PALVAFQKT-F 128 (225)
T ss_dssp -HTTCSSCEEEECCCHHHHHHHHHHTTCTTS----CEEEEEES---SCC--------------------HHHHHHHHH-H
T ss_pred -HhhCCCCEEEecCCHHHHHHHHHHHHhhCC----cEEEEeCc---hhh--------------------hHHHHHHHH-h
Confidence 122234566666678898888888876543 67777651 100 011233333 1
Q ss_pred hhcCCCcEEEEEEecCChHHHHHHHHhhh-cCccEEEEe
Q 038269 693 RQVAEGHVAYAEKHLANSSETFATLRSLE-GQYALIIVG 730 (792)
Q Consensus 693 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~~-~~~dL~iVG 730 (792)
+ +......+.+.+|....++++. +++|.+ ||
T Consensus 129 ----~--~~i~~~~~~~~ee~~~~i~~l~~~G~~vV-VG 160 (225)
T 2pju_A 129 ----N--LRLDQRSYITEEDARGQINELKANGTEAV-VG 160 (225)
T ss_dssp ----T--CCEEEEEESSHHHHHHHHHHHHHTTCCEE-EE
T ss_pred ----C--CceEEEEeCCHHHHHHHHHHHHHCCCCEE-EC
Confidence 1 2234455678888888888884 458874 44
Done!