BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>038271
MFLGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVL
AQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYG
NIFYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK

High Scoring Gene Products

Symbol, full name Information P value
AT5G52970 protein from Arabidopsis thaliana 1.1e-71

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038271
        (158 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168362 - symbol:AT5G52970 "AT5G52970" species...   725  1.1e-71   1


>TAIR|locus:2168362 [details] [associations]
            symbol:AT5G52970 "AT5G52970" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009543 "chloroplast thylakoid lumen"
            evidence=IDA] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009579 "thylakoid" evidence=IDA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009793 "embryo development ending in
            seed dormancy" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0010228 "vegetative to reproductive
            phase transition of meristem" evidence=RCA] [GO:0015995
            "chlorophyll biosynthetic process" evidence=RCA] [GO:0016226
            "iron-sulfur cluster assembly" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0048481 "ovule
            development" evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 GO:GO:0031977 GO:GO:0009543 EMBL:AB018116
            EMBL:AY048216 EMBL:AY091710 IPI:IPI00548952 RefSeq:NP_568781.1
            UniGene:At.8648 ProteinModelPortal:Q9LVV5 IntAct:Q9LVV5
            STRING:Q9LVV5 PaxDb:Q9LVV5 PRIDE:Q9LVV5 EnsemblPlants:AT5G52970.1
            GeneID:835375 KEGG:ath:AT5G52970 TAIR:At5g52970 eggNOG:NOG09616
            HOGENOM:HOG000242352 InParanoid:Q9LVV5 OMA:CLREPVG PhylomeDB:Q9LVV5
            ProtClustDB:CLSN2689998 Genevestigator:Q9LVV5 InterPro:IPR007621
            Pfam:PF04536 Uniprot:Q9LVV5
        Length = 223

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 136/155 (87%), Positives = 150/155 (96%)

Query:     4 GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
             GVG ++AKVGVNKPELLP+EFTSVIDVA FLS+GQE+R+AQEIA+LEKDTGFKLRVLAQN
Sbjct:    69 GVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQN 128

Query:    64 YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
             YP TPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDLDIPRSFWSRLAGKYGN+F
Sbjct:   129 YPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNMF 188

Query:   124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
             YWKEKGEDASIEAAV+AIS+CLREPVG NNC+E++
Sbjct:   189 YWKEKGEDASIEAAVMAISSCLREPVGRNNCAEIQ 223


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       158   0.00085  106 3  11 22  0.37    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.06u 0.15s 14.21t   Elapsed:  00:00:01
  Total cpu time:  14.06u 0.15s 14.21t   Elapsed:  00:00:01
  Start:  Fri May 10 23:40:13 2013   End:  Fri May 10 23:40:14 2013

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