BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038271
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVV5|TL15B_ARATH Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis
thaliana GN=At5g52970 PE=1 SV=2
Length = 223
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 136/155 (87%), Positives = 150/155 (96%)
Query: 4 GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
GVG ++AKVGVNKPELLP+EFTSVIDVA FLS+GQE+R+AQEIA+LEKDTGFKLRVLAQN
Sbjct: 69 GVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQN 128
Query: 64 YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
YP TPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDLDIPRSFWSRLAGKYGN+F
Sbjct: 129 YPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNMF 188
Query: 124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
YWKEKGEDASIEAAV+AIS+CLREPVG NNC+E++
Sbjct: 189 YWKEKGEDASIEAAVMAISSCLREPVGRNNCAEIQ 223
>sp|P82682|TL14_SPIOL Thylakoid lumenal 14.7 kDa protein (Fragment) OS=Spinacia
oleracea PE=1 SV=1
Length = 20
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 11 KVGVNKPELLPREFTSVIDV 30
K GVNKPELLP+E T+VIDV
Sbjct: 1 KTGVNKPELLPKEETTVIDV 20
>sp|P06105|SC160_YEAST Protein SCP160 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCP160 PE=1 SV=3
Length = 1222
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 28 IDVAGFLSDGQERRLAQEI----ADLEKDTGFKLRVLAQNYPETPGLAIKDF-WQVDDRT 82
ID++ LSDG+E+ + ++ A E+ ++++ + + P + W D R
Sbjct: 1105 IDLSSILSDGEEKEVTKDTSNDSAKKEEALDTAVKLIKERIAKAPSATYAGYVWGADTRR 1164
Query: 83 IVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAIS 142
+ P NI A V +++PR + K ++ Y +G A +E A +
Sbjct: 1165 FNMIVGPGGSNIKKIREAADVIINVPRK-----SDKVNDVVYI--RGTKAGVEKAGEMVL 1217
Query: 143 NCLR 146
LR
Sbjct: 1218 KSLR 1221
>sp|Q8A9X8|HCP_BACTN Hydroxylamine reductase OS=Bacteroides thetaiotaomicron (strain
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
GN=hcp PE=3 SV=1
Length = 543
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 112 WSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREP 148
+ LAG YGN +WK+K E S ++ SNC+ P
Sbjct: 273 YKHLAGNYGNA-WWKQKEEFESFNGPILFTSNCIVPP 308
>sp|Q5RIC0|ELP3_DANRE Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3
Length = 548
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 16/90 (17%)
Query: 3 LGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQ 62
LG GC+ ++GV + DVA + G R E L KD GFK V+A
Sbjct: 237 LGYGCTRLEIGVQ---------SVYEDVARDTNRGHTVRAVCESFHLAKDAGFK--VVAH 285
Query: 63 NYPETPGLAI-KDFWQVDDRTIVFVADPTF 91
P+ P + + +D Q I F +P F
Sbjct: 286 MMPDLPNVGMERDVEQF----IEFFENPAF 311
>sp|Q64UD5|HCP_BACFR Hydroxylamine reductase OS=Bacteroides fragilis (strain YCH46)
GN=hcp PE=3 SV=1
Length = 543
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 112 WSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREP 148
+ LAG YGN +WK+K E S ++ +NC+ P
Sbjct: 273 YKHLAGNYGNA-WWKQKEEFESFNGPILFTTNCIVPP 308
>sp|A7Z7B5|LEUD_BACA2 3-isopropylmalate dehydratase small subunit OS=Bacillus
amyloliquefaciens (strain FZB42) GN=leuD PE=3 SV=1
Length = 199
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 76 WQVDDRTIVFVADPTFGNILNFNV--GASVDLDIPRSFWSRLAGKYGN 121
W +DD + P+F +I + N + + +P W +LAG+Y N
Sbjct: 88 WALDDYGFKIIIAPSFADIFHQNCFKNGMLPIRMPYDQWKKLAGQYEN 135
>sp|P05430|OMPA_NEIGO Major outer membrane protein P.IA OS=Neisseria gonorrhoeae
GN=porA PE=3 SV=1
Length = 326
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 41 RLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNF 97
+ A EIADL GFK + E G +K WQ++ + V D +GN +F
Sbjct: 48 KTATEIADLGSKIGFKGQ-------EDLGNGLKAIWQLEQKAYVSGTDTGWGNRQSF 97
>sp|O13733|PPK3_SCHPO Protein kinase domain-containing protein ppk3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ppk3 PE=4 SV=1
Length = 637
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 51 KDTGFKLRVLAQNYPETPGLAIKDFWQV-----DD-----RTIVFVADPTFGNILNFNVG 100
++ K+ + QNY +T +AIK F V D+ RT V D I NFN+G
Sbjct: 475 REAALKVLLSVQNYFDTKDVAIKLFPSVVPLLIDENEGIRRTAEDVTDQFLSRIKNFNLG 534
Query: 101 ASVDLDIPR----SFWSR 114
++ P SFWS+
Sbjct: 535 EKENVSAPAKFNGSFWSK 552
>sp|C5CIJ2|HCP_KOSOT Hydroxylamine reductase OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=hcp PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 112 WSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPV 149
+ L G YG +Y ++K E A A+V +NC+++P+
Sbjct: 286 YKHLVGNYGTSWYNQQK-EFAQFNGAIVMTTNCIQKPL 322
>sp|Q8IW75|SPA12_HUMAN Serpin A12 OS=Homo sapiens GN=SERPINA12 PE=2 SV=1
Length = 414
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 13 GVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKL 57
G+ KP PR + ++ +V G+ ++R A+E+A D GFKL
Sbjct: 19 GLLKPSFSPRNYKALSEVQGW----KQRMAAKELARQNMDLGFKL 59
>sp|B8FWP2|HCP_DESHD Hydroxylamine reductase OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=hcp PE=3 SV=1
Length = 549
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 112 WSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREP 148
++ G YGN +WK+ E S A++ +NCL P
Sbjct: 280 YAHFVGNYGNA-WWKQDKEFDSFNGAILLTTNCLVPP 315
>sp|Q24S27|HCP_DESHY Hydroxylamine reductase OS=Desulfitobacterium hafniense (strain
Y51) GN=hcp PE=3 SV=1
Length = 549
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 112 WSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREP 148
++ G YGN +WK+ E S A++ +NCL P
Sbjct: 280 YAHFVGNYGNA-WWKQDKEFDSFNGAILLTTNCLVPP 315
>sp|Q01770|HCP_DESDA Hydroxylamine reductase OS=Desulfovibrio desulfuricans (strain ATCC
27774 / DSM 6949) GN=hcp PE=1 SV=2
Length = 545
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 112 WSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREP 148
++ G YGN +WK+K E S V+ +NCL P
Sbjct: 278 YAHFKGNYGNA-WWKQKEEFESFNGPVLLTTNCLVPP 313
>sp|A9BHK9|HCP_PETMO Hydroxylamine reductase OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=hcp PE=3 SV=1
Length = 543
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 112 WSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREP 148
+ LAG +G +WK++ E AVV +NC+++P
Sbjct: 287 YEHLAGNFGG-SWWKQQQEFEDFGGAVVMTTNCIQKP 322
>sp|Q5LDB2|HCP_BACFN Hydroxylamine reductase OS=Bacteroides fragilis (strain ATCC 25285
/ NCTC 9343) GN=hcp PE=3 SV=1
Length = 543
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 112 WSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREP 148
+ L G YGN +WK+K E S ++ +NC+ P
Sbjct: 273 YKHLVGNYGNA-WWKQKEEFESFNGPILFTTNCIVPP 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,483,052
Number of Sequences: 539616
Number of extensions: 2494191
Number of successful extensions: 5671
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5668
Number of HSP's gapped (non-prelim): 21
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)