BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038273
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 178/577 (30%), Positives = 259/577 (44%), Gaps = 104/577 (18%)
Query: 42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXX 101
LE + +S + P FL + L+++D S + L G+F
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-- 159
GP +P P L L +++N F G IP + L L+LS N F G++P G
Sbjct: 261 -GP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 160 -----------------------DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
M LK LDLS N+ +GE+PE L +L L LS
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 197 NSLHGQLFYKKIYLRK--LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAW 254
N+ G + K L L+L N TG+IP +LSNCS L L++S N L G IP+
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 255 LGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314
LG+LS L D+ + +N L+G IP E + LE L L N+++G +PS S+ T
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------- 490
Query: 315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQ 374
++ + LS N +G IP WI RL L L L+NN+ G +P +
Sbjct: 491 -----------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 375 LCRLKQLRLIDLSNNNLFGQIPGCLDNTS---------------LHNNG---DNDGSSAP 416
L + L +DL+ N G IP + S + N+G + G+
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 417 TRYKG------------KPLN---KMYG---------------VDLSCNKLTGEIPPQIG 446
++G P N ++YG +D+S N L+G IP +IG
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506
+ + LN HN+++G IP +L+ + LD+S N L+G+IP + L +L +++
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 507 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 543
NNLSG IPE QF TF + NP LCG PLP CD
Sbjct: 714 NNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCD 749
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 131/456 (28%), Positives = 205/456 (44%), Gaps = 67/456 (14%)
Query: 115 LDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSH 171
L +L +S+N G + + L +LN+S N DF G + + +NSL+ LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 172 NQLTGE--IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK 229
N ++G + L GC L++L +S N + G + + L L + +N + IP
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIP- 217
Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289
L +CS L+ L +S N L G+ + + L + ++ N GPIP L L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLS 275
Query: 290 LSENNISGTLPSCSSHS--TIQQVHLSKNMLYGP------------------------LK 323
L+EN +G +P S + T+ + LS N YG L
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 324 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT-RLRYLILANNNLEGEVPNQLCR--LKQ 380
T + LDLS+N FSG +P + L+ L L L++NN G + LC+
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 381 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE 440
L+ + L NN G+IP L N S ++ + LS N L+G
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCS----------------------ELVSLHLSFNYLSGT 433
Query: 441 IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLA 500
IP +G L+ +R L N L G IP +K +E+L + +N+L G+IP L L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 501 VFSVAHNNLSGKIPEWTAQFT-----TFKEDSYEGN 531
S+++N L+G+IP+W + +S+ GN
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 195/424 (45%), Gaps = 40/424 (9%)
Query: 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIG-CFNLEYLVLSENSLH--- 200
LS + NGS+ S SL LDLS N L+G + +G C L++L +S N+L
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 201 ---GQLFYKKIYL----------------------RKLARLHLDANYCTGEIPKSLSNCS 235
G L + + +L L + N +G++ +S C
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 200
Query: 236 PLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295
LE L +S NN IP +LG+ S+L + ++ N L G L++L++S N
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 296 SGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT 355
G +P S +Q + L++N G + ++ LDLS N F G +P + +
Sbjct: 260 VGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 356 RLRYLILANNNLEGEVP-NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS-----LHNNGD 409
L L L++NN GE+P + L +++ L+++DLS N G++P L N S L + +
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSF 469
N P N + + L N TG+IPP + + + +L+ S N L+G IP S
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 470 SNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYE 529
+L ++ L + N L G+IP +L+ + L + N+L+G+IP + T S
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 530 GNPL 533
N L
Sbjct: 499 NNRL 502
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 178/577 (30%), Positives = 259/577 (44%), Gaps = 104/577 (18%)
Query: 42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPXXXXXXXXXXXXXXXXXXXX 101
LE + +S + P FL + L+++D S + L G+F
Sbjct: 199 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 102 SGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-- 159
GP +P P L L +++N F G IP + L L+LS N F G++P G
Sbjct: 258 -GP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 160 -----------------------DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
M LK LDLS N+ +GE+PE L +L L LS
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 197 NSLHGQLFYKKIYLRK--LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAW 254
N+ G + K L L+L N TG+IP +LSNCS L L++S N L G IP+
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Query: 255 LGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314
LG+LS L D+ + +N L+G IP E + LE L L N+++G +PS S+ T
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------- 487
Query: 315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQ 374
++ + LS N +G IP WI RL L L L+NN+ G +P +
Sbjct: 488 -----------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 375 LCRLKQLRLIDLSNNNLFGQIPGCLDNTS---------------LHNNG---DNDGSSAP 416
L + L +DL+ N G IP + S + N+G + G+
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 417 TRYKG------------KPLN---KMYG---------------VDLSCNKLTGEIPPQIG 446
++G P N ++YG +D+S N L+G IP +IG
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506
+ + LN HN+++G IP +L+ + LD+S N L+G+IP + L +L +++
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 507 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 543
NNLSG IPE QF TF + NP LCG PLP CD
Sbjct: 711 NNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCD 746
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 131/456 (28%), Positives = 205/456 (44%), Gaps = 67/456 (14%)
Query: 115 LDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSH 171
L +L +S+N G + + L +LN+S N DF G + + +NSL+ LDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 172 NQLTGE--IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK 229
N ++G + L GC L++L +S N + G + + L L + +N + IP
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIP- 214
Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289
L +CS L+ L +S N L G+ + + L + ++ N GPIP L L+ L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLS 272
Query: 290 LSENNISGTLPSCSSHS--TIQQVHLSKNMLYGP------------------------LK 323
L+EN +G +P S + T+ + LS N YG L
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 324 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT-RLRYLILANNNLEGEVPNQLCR--LKQ 380
T + LDLS+N FSG +P + L+ L L L++NN G + LC+
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 381 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE 440
L+ + L NN G+IP L N S ++ + LS N L+G
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCS----------------------ELVSLHLSFNYLSGT 430
Query: 441 IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLA 500
IP +G L+ +R L N L G IP +K +E+L + +N+L G+IP L L
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 501 VFSVAHNNLSGKIPEWTAQFT-----TFKEDSYEGN 531
S+++N L+G+IP+W + +S+ GN
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 195/424 (45%), Gaps = 40/424 (9%)
Query: 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIG-CFNLEYLVLSENSLH--- 200
LS + NGS+ S SL LDLS N L+G + +G C L++L +S N+L
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 201 ---GQLFYKKIYL----------------------RKLARLHLDANYCTGEIPKSLSNCS 235
G L + + +L L + N +G++ +S C
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 197
Query: 236 PLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295
LE L +S NN IP +LG+ S+L + ++ N L G L++L++S N
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 296 SGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLT 355
G +P S +Q + L++N G + ++ LDLS N F G +P + +
Sbjct: 257 VGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 356 RLRYLILANNNLEGEVP-NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS-----LHNNGD 409
L L L++NN GE+P + L +++ L+++DLS N G++P L N S L + +
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSF 469
N P N + + L N TG+IPP + + + +L+ S N L+G IP S
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 470 SNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYE 529
+L ++ L + N L G+IP +L+ + L + N+L+G+IP + T S
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 530 GNPL 533
N L
Sbjct: 496 NNRL 499
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 36/232 (15%)
Query: 341 NSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD 400
N+ G IP I +LT+L YL + + N+ G +P+ L ++K L +D S N L G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 401 NTSLHN------NGDNDGSSAPTRYKGKPLNKMY-GVDLSCNKLTGEIPPQIGKLTSIRA 453
+SL N +G+ + P Y +K++ + +S N+LTG+IPP L ++
Sbjct: 146 -SSLPNLVGITFDGNRISGAIPDSYGS--FSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201
Query: 454 LNFSHNNLTGVIPVSFSNLKQVE-----------------------SLDVSYNNLNGKIP 490
++ S N L G V F + K + LD+ N + G +P
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 491 PQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDC 542
L +L L +V+ NNL G+IP+ F +Y N LCG PLP C
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 435 NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLV 494
N L G IPP I KLT + L +H N++G IP S +K + +LD SYN L+G +PP +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 495 ELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP---DCDVAAVPEAS 551
L L + N +SG IP+ F+ L GK P + ++A V +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 552 NEEDGNSLIDMGS 564
N +G++ + GS
Sbjct: 207 NMLEGDASVLFGS 219
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 109/279 (39%), Gaps = 56/279 (20%)
Query: 123 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHL 182
N G IP I +L YL ++ + +G+IP + + +L LD S+N L+G +P +
Sbjct: 87 NNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 183 VIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYM 242
L L + D N +G IP S + S L
Sbjct: 146 S-------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKL----- 175
Query: 243 SDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC 302
+ ++ N L G IP F LN L +DLS N + G
Sbjct: 176 ------------------FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216
Query: 303 -SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLI 361
S Q++HL+KN L G ++ LDL N G +P + +L L L
Sbjct: 217 FGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 362 LANNNLEGEVPNQLCRLKQLRLIDLSNNNLF--GQIPGC 398
++ NNL GE+P Q L++ + +NN +P C
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 21/245 (8%)
Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIY--L 210
++P I +L LDL +N ++ E+ + G +L LVL N + ++K + L
Sbjct: 47 AVPKEISPDTTL--LDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK--IHEKAFSPL 101
Query: 211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINH 270
RKL +L++ N+ EIP +L S L L + DN + L ++N I M N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158
Query: 271 LQG----PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT 326
L+ P + +LNYL I + I LP T+ ++HL N + ++
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE-----TLNELHLDHNKIQA-IELED 212
Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL 386
S + L L +N + L LR L L NN L VP L LK L+++ L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYL 271
Query: 387 SNNNL 391
NN+
Sbjct: 272 HTNNI 276
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 163 SLKFLDLSHNQLTGEIPEHL--VIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220
L +L +S +LTG IP+ L + +L++ + L L Y K+Y RL L
Sbjct: 173 KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY-----RLGLGH 226
Query: 221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280
N SLS L L++ DNN +PA L +L L + + N++ +FC
Sbjct: 227 NQIRMIENGSLSFLPTLRELHL-DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285
Query: 281 QLNY 284
+ +
Sbjct: 286 PVGF 289
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 9/203 (4%)
Query: 288 LDLSENNISGTLPSCSSH-STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
L+L EN+I H ++ + LSKN++ ++ G F S+ TL+L N +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK-IEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 347 IPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC----LDNT 402
E L++LR L L NN +E R+ LR +DL I L N
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT 462
N G + P L ++ ++LS N+L P LTS+R L H +
Sbjct: 159 RYLNLGMCNLKDIPNL---TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 463 GVIPVSFSNLKQVESLDVSYNNL 485
+ +F +LK +E L++S+NNL
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNL 238
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 13/184 (7%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPS-SIGDMNSLKFLDLSHNQ 173
L+TL + N +P + Y +L L L RN+ SIPS + + SL+ LDL +
Sbjct: 85 LNTLELFDNRLT-TVPTQAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 174 LTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKI----YLRKLARLHLDANYCTGEIPK 229
I E G NL YL L G K I L +L L L N P
Sbjct: 143 RLEYISEAAFEGLVNLRYLNL------GMCNLKDIPNLTALVRLEELELSGNRLDLIRPG 196
Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289
S + L L++ + +L SL ++ ++ N+L F L+ LE +
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVH 256
Query: 290 LSEN 293
L+ N
Sbjct: 257 LNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 9/203 (4%)
Query: 288 LDLSENNISGTLPSCSSH-STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
L+L EN+I H ++ + LSKN++ ++ G F S+ TL+L N +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 347 IPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC----LDNT 402
E L++LR L L NN +E R+ LR +DL I L N
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT 462
N G + P L ++ ++LS N+L P LTS+R L H +
Sbjct: 159 RYLNLGMCNLKDIPNL---TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 463 GVIPVSFSNLKQVESLDVSYNNL 485
+ +F +LK +E L++S+NNL
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNL 238
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 13/184 (7%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPS-SIGDMNSLKFLDLSHNQ 173
L+TL + N +P + Y +L L L RN+ SIPS + + SL+ LDL +
Sbjct: 85 LNTLELFDNRLT-TVPTQAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 174 LTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKI----YLRKLARLHLDANYCTGEIPK 229
I E G NL YL L G K I L +L L L N P
Sbjct: 143 RLEYISEAAFEGLVNLRYLNL------GMCNLKDIPNLTALVRLEELELSGNRLDLIRPG 196
Query: 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289
S + L L++ + +L SL ++ ++ N+L F L+ LE +
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVH 256
Query: 290 LSEN 293
L+ N
Sbjct: 257 LNHN 260
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 11/247 (4%)
Query: 135 VYFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYL 192
V P L +L+LSRN F G S SLK+LDLS N + L G LE+L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHL 401
Query: 193 VLSENSL-HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN- 250
++L F + LR L L + + + S LE L M+ N+ N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG--TLPSCSSHSTI 308
+P L +L + ++ L+ P F L+ L++L++S NN T P +++
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSL 520
Query: 309 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY--WIERLTRLRYLILANNN 366
Q + S N + K SS+ L+L+ N F+ + +++ + R L++
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580
Query: 367 LEGEVPN 373
+E P+
Sbjct: 581 MECATPS 587
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 28/231 (12%)
Query: 285 LEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 344
LE LDLS N +S C S S F +S+ LDLS+N
Sbjct: 349 LEFLDLSRNGLS--FKGCCSQSD--------------------FGTTSLKYLDLSFNGVI 386
Query: 345 GNIPYWIERLTRLRYLILANNNLEGEVP-NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS 403
++ L +L +L ++NL+ + L+ L +D+S+ + G + S
Sbjct: 387 TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 404 LHNNGDNDGSSAPTRYKG---KPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN 460
G+S + L + +DLS +L P L+S++ LN SHNN
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVEL-NVLAVFSVAHNNLS 510
+ + L ++ LD S N++ +L + LA ++ N+ +
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNG 487
IG L +++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 11/247 (4%)
Query: 135 VYFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYL 192
V P L +L+LSRN F G S SLK+LDLS N + L G LE+L
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL--GLEQLEHL 425
Query: 193 VLSENSL-HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN- 250
++L F + LR L L + + + S LE L M+ N+ N
Sbjct: 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485
Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG--TLPSCSSHSTI 308
+P L +L + ++ L+ P F L+ L++L++S NN T P +++
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSL 544
Query: 309 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY--WIERLTRLRYLILANNN 366
Q + S N + K SS+ L+L+ N F+ + +++ + R L++
Sbjct: 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 604
Query: 367 LEGEVPN 373
+E P+
Sbjct: 605 MECATPS 611
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNG 487
IG L +++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 28/231 (12%)
Query: 285 LEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 344
LE LDLS N +S C S S +GT S+ LDLS+N
Sbjct: 373 LEFLDLSRNGLS--FKGCCSQS----------------DFGTI----SLKYLDLSFNGVI 410
Query: 345 GNIPYWIERLTRLRYLILANNNLEGEVP-NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS 403
++ L +L +L ++NL+ + L+ L +D+S+ + G + S
Sbjct: 411 TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469
Query: 404 LHNNGDNDGSSAPTRYKGK---PLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN 460
G+S + L + +DLS +L P L+S++ LN SHNN
Sbjct: 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVEL-NVLAVFSVAHNNLS 510
+ + L ++ LD S N++ +L + LA ++ N+ +
Sbjct: 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 30/252 (11%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
FP L L L+ N + P + ++ +L+ L L N+L IP + G NL L +SE
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE 113
Query: 197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLG 256
N + L Y L L L + N ++ S + LE L + NL +IP
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPT--- 169
Query: 257 NLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN 316
A++HL G I L LN I D S + SH ++ N
Sbjct: 170 ---------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-MTPN 219
Query: 317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER-LTRLRYLILANN---NLEGEVP 372
LYG ++ +L +++ + + +PY R L LR+L L+ N +EG +
Sbjct: 220 CLYG----------LNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 373 NQLCRLKQLRLI 384
++L RL++++L+
Sbjct: 269 HELLRLQEIQLV 280
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 18/268 (6%)
Query: 224 TGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLN 283
TG P+ CS + + + +P + + L D + N ++ EF
Sbjct: 1 TGCPPRC--ECSAQDRAVLCHRKRFVAVPEGIPTETRLLD--LGKNRIKTLNQDEFASFP 56
Query: 284 YLEILDLSENNISGTLPSCSSHS-TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 342
+LE L+L+EN +S P ++ ++ + L N L + G F S++ LD+S N
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENK 115
Query: 343 FSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL-------FGQI 395
+ Y + L L+ L + +N+L L L + L NL +
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALN 455
G + H N +A Y K L ++ +++S + P ++ +L+
Sbjct: 176 HGLIVLRLRHLN-----INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 456 FSHNNLTGVIPVSFSNLKQVESLDVSYN 483
+H NLT V ++ +L + L++SYN
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 12/164 (7%)
Query: 355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNT-SLHNNGDNDGS 413
T R L L N ++ ++ L ++L+ N + PG +N +L G
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90
Query: 414 SAPTRYKGKPLNKMYGV------DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV 467
R K PL G+ D+S NK+ + L ++++L N+L +
Sbjct: 91 ----RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146
Query: 468 SFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511
+FS L +E L + NL L L+ L V + H N++
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
D S KLT ++P + T+I LN +HN L + +F+ Q+ SLDV +N + K+
Sbjct: 14 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 69
Query: 490 PPQLVE-LNVLAVFSVAHNNLSGKIPEWTAQFTT 522
P+L + L +L V ++ HN LS ++ + T F T
Sbjct: 70 EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 102
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 32/241 (13%)
Query: 278 EFCQ-LNYLEILDLSENNIS----GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
E CQ L L++L+L N +S T C++ + ++HL N + +K F + +
Sbjct: 72 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN---LTELHLMSNSI-QKIKNNPFVKQKN 127
Query: 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRL--KQLRLIDLSNNN 390
++TLDLS+N S +L L+ L+L+NN ++ +L L+ ++LS+N
Sbjct: 128 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 187
Query: 391 LFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS 450
+ PGC A R G LN + KL E+ TS
Sbjct: 188 IKEFSPGCFH--------------AIGRLFGLFLNNVQLGPSLTEKLCLELAN-----TS 228
Query: 451 IRALNFSHNNLTGVIPVSFSNLK--QVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
IR L+ S++ L+ +F LK + LD+SYNNLN L L F + +NN
Sbjct: 229 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 288
Query: 509 L 509
+
Sbjct: 289 I 289
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 158/375 (42%), Gaps = 47/375 (12%)
Query: 133 IGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYL 192
+G+ + L L+LS N+ N S + L++ L +N + + H + G FN+ YL
Sbjct: 248 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYL 306
Query: 193 VLSENSLHGQLFYKKI---------YLRKLARLHLDANYCTGEIPKSLSNCSPLEGL--- 240
L + + + +L+ L L+++ N +IP SN GL
Sbjct: 307 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN----DIPGIKSNM--FTGLINL 360
Query: 241 -YMSDNNLYGNIPAWLGNL------SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
Y+S +N + ++ S L+ + + N + F L +LE+LDL N
Sbjct: 361 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 420
Query: 294 NISGTLPSCSSH--STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPY 349
I L I +++LS N Y L +F S+ L L + + P
Sbjct: 421 EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 479
Query: 350 WIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD 409
+ L L L L+NNN+ + L L++L ++DL +NNL L + +
Sbjct: 480 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL----------ARLWKHAN 529
Query: 410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGK-LTSIRALNFSHNNLTGVIPVS 468
G Y K L+ ++ ++L N EIP ++ K L ++ ++ NNL +
Sbjct: 530 PGGPI----YFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASV 584
Query: 469 FSNLKQVESLDVSYN 483
F+N ++SL++ N
Sbjct: 585 FNNQVSLKSLNLQKN 599
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
D S KLT ++P + T+I LN +HN L + +F+ Q+ SLDV +N + K+
Sbjct: 19 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 74
Query: 490 PPQLVE-LNVLAVFSVAHNNLSGKIPEWTAQFTT 522
P+L + L +L V ++ HN LS ++ + T F T
Sbjct: 75 EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 107
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 32/241 (13%)
Query: 278 EFCQ-LNYLEILDLSENNIS----GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
E CQ L L++L+L N +S T C++ + ++HL N + +K F + +
Sbjct: 77 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN---LTELHLMSNSIQ-KIKNNPFVKQKN 132
Query: 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLK--QLRLIDLSNNN 390
++TLDLS+N S +L L+ L+L+NN ++ +L L+ ++LS+N
Sbjct: 133 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 192
Query: 391 LFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS 450
+ PGC A R G LN + KL E+ TS
Sbjct: 193 IKEFSPGCFH--------------AIGRLFGLFLNNVQLGPSLTEKLCLELAN-----TS 233
Query: 451 IRALNFSHNNLTGVIPVSFSNLK--QVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
IR L+ S++ L+ +F LK + LD+SYNNLN L L F + +NN
Sbjct: 234 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 293
Query: 509 L 509
+
Sbjct: 294 I 294
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 158/375 (42%), Gaps = 47/375 (12%)
Query: 133 IGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYL 192
+G+ + L L+LS N+ N S + L++ L +N + + H + G FN+ YL
Sbjct: 253 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYL 311
Query: 193 VLSENSLHGQLFYKKI---------YLRKLARLHLDANYCTGEIPKSLSNCSPLEGL--- 240
L + + + +L+ L L+++ N +IP SN GL
Sbjct: 312 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN----DIPGIKSNM--FTGLINL 365
Query: 241 -YMSDNNLYGNIPAWLGNL------SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
Y+S +N + ++ S L+ + + N + F L +LE+LDL N
Sbjct: 366 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 425
Query: 294 NISGTLPSCSSH--STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPY 349
I L I +++LS N Y L +F S+ L L + + P
Sbjct: 426 EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 484
Query: 350 WIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD 409
+ L L L L+NNN+ + L L++L ++DL +NNL L + +
Sbjct: 485 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL----------ARLWKHAN 534
Query: 410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGK-LTSIRALNFSHNNLTGVIPVS 468
G Y K L+ ++ ++L N EIP ++ K L ++ ++ NNL +
Sbjct: 535 PGGPI----YFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASV 589
Query: 469 FSNLKQVESLDVSYN 483
F+N ++SL++ N
Sbjct: 590 FNNQVSLKSLNLQKN 604
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI 489
D S KLT ++P + T+I LN +HN L + +F+ Q+ SLDV +N + K+
Sbjct: 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 64
Query: 490 PPQLVE-LNVLAVFSVAHNNLSGKIPEWTAQFTT 522
P+L + L +L V ++ HN LS ++ + T F T
Sbjct: 65 EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 32/241 (13%)
Query: 278 EFCQ-LNYLEILDLSENNIS----GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
E CQ L L++L+L N +S T C++ + ++HL N + +K F + +
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN---LTELHLMSNSI-QKIKNNPFVKQKN 122
Query: 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLK--QLRLIDLSNNN 390
++TLDLS+N S +L L+ L+L+NN ++ +L L+ ++LS+N
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 391 LFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS 450
+ PGC A R G LN + KL E+ TS
Sbjct: 183 IKEFSPGCFH--------------AIGRLFGLFLNNVQLGPSLTEKLCLELAN-----TS 223
Query: 451 IRALNFSHNNLTGVIPVSFSNLK--QVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
IR L+ S++ L+ +F LK + LD+SYNNLN L L F + +NN
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 509 L 509
+
Sbjct: 284 I 284
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 158/375 (42%), Gaps = 47/375 (12%)
Query: 133 IGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYL 192
+G+ + L L+LS N+ N S + L++ L +N + + H + G FN+ YL
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYL 301
Query: 193 VLSENSLHGQLFYKKI---------YLRKLARLHLDANYCTGEIPKSLSNCSPLEGL--- 240
L + + + +L+ L L+++ N +IP SN GL
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN----DIPGIKSNM--FTGLINL 355
Query: 241 -YMSDNNLYGNIPAWLGNL------SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
Y+S +N + ++ S L+ + + N + F L +LE+LDL N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 294 NISGTLPSCSSH--STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPY 349
I L I +++LS N Y L +F S+ L L + + P
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474
Query: 350 WIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD 409
+ L L L L+NNN+ + L L++L ++DL +NNL L + +
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL----------ARLWKHAN 524
Query: 410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGK-LTSIRALNFSHNNLTGVIPVS 468
G Y K L+ ++ ++L N EIP ++ K L ++ ++ NNL +
Sbjct: 525 PGGPI----YFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 469 FSNLKQVESLDVSYN 483
F+N ++SL++ N
Sbjct: 580 FNNQVSLKSLNLQKN 594
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 11/202 (5%)
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ--GPIPLEFCQLNYLEILD 289
S SP L S+N L + G+L+ L +++ +N L+ I Q+ L+ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 290 LSENNIS--GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 347
+S+N++S CS ++ +++S N+L + + R I LDL N I
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPR--IKVLDLHSNKIKS-I 436
Query: 348 PYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS--LH 405
P + +L L+ L +A+N L+ RL L+ I L N P +D S L+
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSRWLN 495
Query: 406 NNGDNDGSSAPTRYKGKPLNKM 427
N + SA GKP+ +
Sbjct: 496 KNSQKEQGSAKCSGSGKPVRSI 517
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 450 SIRALNFSHNNLTGVIPVSFSNLK-QVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
S+ +LN S N LT I F L +++ LD+ N + IP Q+V+L L +VA N
Sbjct: 400 SLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ 455
Query: 509 LSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNS 558
L + T+ ++ NP C P D + + S +E G++
Sbjct: 456 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 505
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 39/156 (25%)
Query: 139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN----LEYLVL 194
+ LN+S+N + S I ++ L+ L +SHN++ ++L I F LEYL L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRI-----QYLDISVFKFNQELEYLDL 76
Query: 195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP-- 252
S N L + + L+ HLD ++ N + +P
Sbjct: 77 SHNKLVKISCHPTVNLK-----HLDLSF-----------------------NAFDALPIC 108
Query: 253 AWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEIL 288
GN+S L + ++ HL+ L LN ++L
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 26/228 (11%)
Query: 307 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNN 366
+++ ++L K+ + L TF + + LDL+ +G +P IE + L+ L+L N+
Sbjct: 254 SVESINLQKHR-FSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANS 311
Query: 367 LEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNK 426
+ QLC++ P D L+ G+ TR K L
Sbjct: 312 FD-----QLCQINA------------ASFPSLRD---LYIKGNMRKLDLGTRCLEK-LEN 350
Query: 427 MYGVDLSCNKLTGE--IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484
+ +DLS + + Q+ L ++ LN S+N G+ +F Q+E LDV++ +
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 485 LNGKIPPQ-LVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGN 531
L+ K P L++L V +++H L A + + +GN
Sbjct: 411 LHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 122/289 (42%), Gaps = 40/289 (13%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ-------------------LTGE 177
F R+ L+L+ NG +PS I MNSLK L L+ N + G
Sbjct: 276 FTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 178 IPE-HLVIGCF----NLEYLVLSENSLHGQ----LFYKKIYLRKLARLHLDANYCTGEIP 228
+ + L C NL+ L LS + + L K LR L L+L N G
Sbjct: 335 MRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN--LRHLQYLNLSYNEPLGLED 392
Query: 229 KSLSNCSPLEGLYMSDNNLYGNIP-AWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEI 287
++ C LE L ++ +L+ P + NL L + ++ L L L
Sbjct: 393 QAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRH 452
Query: 288 LDLSENNIS-GTLPSCSSHSTIQQVHL----SKNMLYGPLKYGTFFNRSSIVTLDLSYNS 342
L+L N+ G++ + + + + S N+L + F ++ LDLS+NS
Sbjct: 453 LNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLL--SIDQQAFHGLRNVNHLDLSHNS 510
Query: 343 FSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
+G+ + L L YL +A+NN+ P+ L L Q +I+LS+N L
Sbjct: 511 LTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 35/208 (16%)
Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN------QLCRLKQLR--LIDLS 387
L+LSYN G + +L L +A +L + P+ L R+ L L+D S
Sbjct: 380 LNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS 439
Query: 388 NNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGK 447
N +L + L + +L N DGS + T L +M G
Sbjct: 440 NQHLLAGLQD-LRHLNLQGNSFQDGSISKTN-----LLQMVG------------------ 475
Query: 448 LTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHN 507
S+ L S NL + +F L+ V LD+S+N+L G L L L ++A N
Sbjct: 476 --SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASN 532
Query: 508 NLSGKIPEWTAQFTTFKEDSYEGNPLLC 535
N+ P + + NPL C
Sbjct: 533 NIRIIPPHLLPALSQQSIINLSHNPLDC 560
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 6/168 (3%)
Query: 135 VYFPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYL 192
V P L +L+LSRN F G S SLK+LDLS N + L G LE+L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHL 401
Query: 193 VLSENSL-HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN- 250
++L F + LR L L + + + S LE L M+ N+ N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 251 IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGT 298
+P L +L + ++ L+ P F L+ L++L+++ N +
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 102/229 (44%), Gaps = 14/229 (6%)
Query: 137 FPRLVYLNLSRNDFN---GSIPSSIGDMNSLKFLDLSHNQLTGE-IPEHLVIGCFNLEYL 192
FP L +L R F G S D+ SL+FLDLS N L+ + G +L+YL
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 193 VLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL-YMSDNNLYGNI 251
LS N G + +L HLD + + S L L Y+ ++ + +
Sbjct: 379 DLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 252 P--AWLGNLSSLNDIMMAINHLQGP-IPLEFCQLNYLEILDLSENNISGTLPSC-SSHST 307
LSSL + MA N Q +P F +L L LDLS+ + P+ +S S+
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTR 356
+Q ++++ N L + G F +S+ + L N + + P I+ L+R
Sbjct: 496 LQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 542
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNL 485
IG L +++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 448 LTSIRALNFSHNNLT-GVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506
L+S+ L + N+ +P F+ L+ + LD+S L P L+ L V ++A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 507 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNS 558
N L + T+ ++ NP C P D + + S +E G++
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 555
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 148/374 (39%), Gaps = 41/374 (10%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN----LEYL 192
FP L L+LSR + +I D LS LTG + L +G F+ L+ L
Sbjct: 51 FPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 193 VLSENSLHGQLFYKKIYLRKLARLHLDANYCTG-EIPKSLSNCSPLEGLYMSDNNLYGNI 251
V E +L + +L+ L L++ N ++P+ SN + LE L +S N +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-- 163
Query: 252 PAWLGNLSSLNDI-MMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQ 310
+ +L L+ + ++ ++ P+ F Q + + L + + S + T
Sbjct: 164 -IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-- 220
Query: 311 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRY----LILANNN 366
+ + L G F N ++ D S N+ RL L Y +I N
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280
Query: 367 LEGEVPNQLCRLKQLRLIDLSNN----------NLFGQIPGC-LDNTSLHNNGDNDGSSA 415
L L + R+ D S N FGQ P L + N G +A
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340
Query: 416 PTRYKGKPLNKMYGVDLSCNKLT--GEIPPQIGKLTSIRALNFSHNNLTGVIPVS--FSN 471
+ L + +DLS N L+ G TS++ L+ S N GVI +S F
Sbjct: 341 ---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLG 394
Query: 472 LKQVESLDVSYNNL 485
L+Q+E LD ++NL
Sbjct: 395 LEQLEHLDFQHSNL 408
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 26/236 (11%)
Query: 166 FLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTG 225
LDL +N++T EI + NL L+L N + L KL RL+L N
Sbjct: 56 LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL----------QGPI 275
E+P+ + L+ L + +N + + L+ + + + N L QG
Sbjct: 114 ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169
Query: 276 PLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 335
+L+Y+ I D + I LP ++ ++HL N + + + +++
Sbjct: 170 ---MKKLSYIRIADTNITTIPQGLPP-----SLTELHLDGNKITK-VDAASLKGLNNLAK 220
Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
L LS+NS S + LR L L NN L +VP L K ++++ L NNN+
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 11/189 (5%)
Query: 111 PHWHLDTLHVSKNFFQGNIPLEIGVYFPR-LVYLNLSRNDFNGSIPSSIGDMNSLKFLDL 169
P L+ L++SKN + E+ P+ L L + N+ S +N + ++L
Sbjct: 98 PLVKLERLYLSKNQLK-----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 170 SHNQLTGE-IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIP 228
N L I G L Y+ +++ ++ + L LHLD N T
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 229 KSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEIL 288
SL + L L +S N++ L N L ++ + N L +P Y++++
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268
Query: 289 DLSENNISG 297
L NNIS
Sbjct: 269 YLHNNNISA 277
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 289 DLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 348
D+ + +IS + +++ ++L ++ + + TF + + LDL+ G +P
Sbjct: 234 DIDDEDISSAMLKGLCEMSVESLNLQEHR-FSDISSTTFQCFTQLQELDLTATHLKG-LP 291
Query: 349 YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP------GCLDNT 402
++ L L+ L+L+ N+ + QLC++ L++ + G + GCL+
Sbjct: 292 SGMKGLNLLKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLE-- 344
Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE--IPPQIGKLTSIRALNFSHNN 460
L + +DLS N + Q+ L+ ++ LN SHN
Sbjct: 345 --------------------KLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE 384
Query: 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIP 490
G+ +F Q+E LD+++ L+ P
Sbjct: 385 PLGLQSQAFKECPQLELLDLAFTRLHINAP 414
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 26/236 (11%)
Query: 166 FLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTG 225
LDL +N++T EI + NL L+L N + L KL RL+L N
Sbjct: 56 LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL----------QGPI 275
E+P+ + L+ L + +N + + L+ + + + N L QG
Sbjct: 114 ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169
Query: 276 PLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 335
+L+Y+ I D + I LP ++ ++HL N + + + +++
Sbjct: 170 ---MKKLSYIRIADTNITTIPQGLPP-----SLTELHLDGNKITK-VDAASLKGLNNLAK 220
Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
L LS+NS S + LR L L NN L +VP L K ++++ L NNN+
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 11/189 (5%)
Query: 111 PHWHLDTLHVSKNFFQGNIPLEIGVYFPR-LVYLNLSRNDFNGSIPSSIGDMNSLKFLDL 169
P L+ L++SKN + E+ P+ L L + N+ S +N + ++L
Sbjct: 98 PLVKLERLYLSKNQLK-----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 170 SHNQLTGE-IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIP 228
N L I G L Y+ +++ ++ + L LHLD N T
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 229 KSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEIL 288
SL + L L +S N++ L N L ++ + N L +P Y++++
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268
Query: 289 DLSENNISG 297
L NNIS
Sbjct: 269 YLHNNNISA 277
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 13/250 (5%)
Query: 134 GVY--FPRLVYLNLSRN--DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL 189
GV+ +L L+LS N F G S SLK+LDLS N + L G L
Sbjct: 46 GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQL 103
Query: 190 EYLVLSENSL-HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY 248
E+L ++L F + LR L L + + + S LE L M+ N+
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Query: 249 GN-IPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG--TLPSCSSH 305
N +P L +L + ++ L+ P F L+ L++L++S NN T P
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCL 222
Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY--WIERLTRLRYLILA 363
+++Q + S N + K SS+ L+L+ N F+ + +++ + R L++
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 282
Query: 364 NNNLEGEVPN 373
+E P+
Sbjct: 283 VERMECATPS 292
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 33/236 (13%)
Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN--SFSGNIPYWIERLTRLRYLILA 363
S+ ++ L N L L +G F + + L LS N SF G T L+YL L+
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 364 NNNLEGEVPNQLCRLKQLRLIDLSNNNL--------FGQIPGC--LDNTSLHN----NGD 409
N + N L L+QL +D ++NL F + LD + H NG
Sbjct: 87 FNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 410 NDGSSAPTRYKGK--------------PLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALN 455
+G S+ K L + +DLS +L P L+S++ LN
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 456 FSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVEL-NVLAVFSVAHNNLS 510
SHNN + + L ++ LD S N++ +L + LA ++ N+ +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 87/399 (21%), Positives = 154/399 (38%), Gaps = 66/399 (16%)
Query: 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI 251
LV+ N+ G L L L LD N + + + LE L ++ NL G +
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Query: 252 PA--WLGNLSSLNDIMMAINHLQGPIPLEF-CQLNYLEILDLSENNISG----------- 297
+ + L+SL +++ N+++ P F + +LDL+ N +
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 298 ---TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIER 353
TL SS T+Q ++ G K G F +SI TLDLS N F ++ + +
Sbjct: 180 KHFTLLRLSS-ITLQDMN---EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235
Query: 354 L--TRLRYLILANNNLEG--------EVPNQLC----RLKQLRLIDLSNNNLFGQIPGCL 399
+ T+++ LIL+N+ G + P+ ++ DLS + +F +
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295
Query: 400 DNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN 459
+ + + L+ N++ LT + LN S N
Sbjct: 296 SH----------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 460 NLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQ 519
L + F NL ++E LD+SYN++ + L L ++ N L +
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 520 FTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNS 558
T+ ++ NP C P D + + S +E G++
Sbjct: 394 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 432
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 140 LVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198
L+ LNLS+N F GSI S + +++ L+ LDLS+N + + + +G NL+ L L N
Sbjct: 325 LLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQ 382
Query: 199 L 199
L
Sbjct: 383 L 383
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 8/179 (4%)
Query: 215 RLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL-GNLSSLNDIMMAINHLQG 273
+L L +N + K+ + L LY++DN L +PA + L +L + + N LQ
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 274 -PIPLEFCQLNYLEILDLSENNISGTLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRS 331
PI + F QL L L L N + P S + + + L N L L G F +
Sbjct: 100 LPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLT 157
Query: 332 SIVTLDLSYNSFSGNIPY-WIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN 389
S+ L L YN+ +P ++LT L+ L L NN L+ L++L+++ L N
Sbjct: 158 SLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
Query: 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI 395
LDL N S RLT+LR L L +N L+ LK L + +++N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 396 PGCLD---NTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIR 452
G D N + N S P R L K+ + L N+L KLTS++
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 453 ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIP 490
L +N L V +F L ++++L + N L ++P
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 114 HLDTLHVSKNFFQGNIPLEIGVY--FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSH 171
+L+TL V+ N Q L IGV+ L L L RN P + L +L L +
Sbjct: 86 NLETLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 172 NQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221
N+L +P+ + +L+ L L N L L +L L LD N
Sbjct: 143 NELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 286 EILDLSENNISGTLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 344
+IL L +N I+ P S +++++L N L G L G F + + + LDL N +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 345 GNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS 403
+RL L+ L + N L E+P + RL L + L N L G D S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 18/243 (7%)
Query: 278 EFCQ-LNYLEILDLSENNISG----TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 332
E CQ L L++L+L N +S T C++ + ++ L N ++ +K F N+ +
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCTN---LTELDLMSNSIHK-IKSNPFKNQKN 122
Query: 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRL--KQLRLIDLSNNN 390
++ LDLS+N S +L L+ L+LA N + +L L LR +DLS+N
Sbjct: 123 LIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNP 182
Query: 391 LFGQIPGCLDNTS-----LHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKL--TGEIPP 443
L PGC L NN + + + L+ N+L T E
Sbjct: 183 LKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTF 242
Query: 444 QIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFS 503
K T++ L+ S+NNL V SFS L + L + YNN+ P L+ L S
Sbjct: 243 SGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLS 302
Query: 504 VAH 506
+
Sbjct: 303 LKR 305
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 150/361 (41%), Gaps = 43/361 (11%)
Query: 164 LKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYC 223
LK L+L HN+L+ +I + + C NL L L NS+H + L +L L N
Sbjct: 75 LKVLNLQHNELS-QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Query: 224 TGEIPKSLSNCSPLEGLYMSDNN---LYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280
+ + L+ L ++ N L +LGN SSL + ++ N L+ P F
Sbjct: 134 SSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQ 192
Query: 281 QLNYLEILDLSENNISGTLPS--C--SSHSTIQQVHLSKNMLYGPLKYGTF--FNRSSIV 334
+ L L L+ ++ L C S+++IQ + L+ N L TF +++
Sbjct: 193 TIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLAT-SESTFSGLKWTNLT 251
Query: 335 TLDLSYNSF----SGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNN 390
LDLSYN+ +G+ Y L LRYL L NN++ P L LR + L
Sbjct: 252 QLDLSYNNLHDVGNGSFSY----LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Query: 391 LFGQIPGC----LDNTSLH--------NNGDNDGSSAPT-------RYKGKPLNKMYGVD 431
+ +D+ S N DN+ S + K L+K +
Sbjct: 308 TKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFT-- 365
Query: 432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491
S LT E + + + LN + N+++ + +FS L Q+ LD+ N + K+
Sbjct: 366 -SLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSG 423
Query: 492 Q 492
Q
Sbjct: 424 Q 424
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 159/405 (39%), Gaps = 84/405 (20%)
Query: 134 GVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLV 193
G+ + L L+LS N+ + S + SL++L L +N + P G NL YL
Sbjct: 244 GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFY-GLSNLRYLS 302
Query: 194 LSENSLHGQLF---------YKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL---- 240
L + + +L+ L L++D N IP + SN GL
Sbjct: 303 LKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDN----NIPSTKSNT--FTGLVSLK 356
Query: 241 YMSDNNLYGNIPAWLGNL------SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENN 294
Y+S + + ++ S L + + NH+ F L L ILDL N
Sbjct: 357 YLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNE 416
Query: 295 ISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL 354
I L Q+ +N+ L Y + L LS +SF+ +P ++RL
Sbjct: 417 IEQKLSG-------QEWRGLRNIFEIYLSYNKY--------LQLSTSSFAL-VPS-LQRL 459
Query: 355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG---QIPGCLDNTSLHNNGDND 411
LR + L N ++ P+ L+ L ++DLSNNN+ + L+N + + N+
Sbjct: 460 M-LRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNN 515
Query: 412 GSSAPTRYK-GKPLNKMYGV------DLSCNKLTGEIPPQIGK----------------- 447
+ R G P+N + G+ +L N L EIP + K
Sbjct: 516 LARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIPVGVFKNLFELKSINLGLNNLNK 574
Query: 448 --------LTSIRALNFSHNNLTGVIPVSFS-NLKQVESLDVSYN 483
TS+R+LN N +T V F + + SLD+ +N
Sbjct: 575 LEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 138/360 (38%), Gaps = 77/360 (21%)
Query: 163 SLKFLDLSHNQLTGEIPEHLV-IGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221
S++ L L++NQL + NL L LS N+LH YL L L L+ N
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 222 YCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ 281
P+S S L Y+S + L + +++D F
Sbjct: 283 NIQRLSPRSFYGLSNLR--YLSLKRAFTKQSVSLASHPNIDDF-------------SFQW 327
Query: 282 LNYLEILDLSENNISGTLPSCSSHS-----TIQQVHLSKNML-YGPLKYGTFFN--RSSI 333
L YLE L++ +NNI PS S++ +++ + LSK L TF + S +
Sbjct: 328 LKYLEYLNMDDNNI----PSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPL 383
Query: 334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG 393
+TL+L+ N S +AN L QLR++DL N +
Sbjct: 384 LTLNLTKNHISK----------------IANGTFSW--------LGQLRILDLGLNEIEQ 419
Query: 394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRA 453
++ G ++G L ++ + LS NK + S++
Sbjct: 420 KLSG-------------------QEWRG--LRNIFEIYLSYNKYLQLSTSSFALVPSLQR 458
Query: 454 LNFSHNNLTGV--IPVSFSNLKQVESLDVSYNNLNGKIPPQLVE-LNVLAVFSVAHNNLS 510
L L V P F L+ + LD+S NN+ I L+E L L + HNNL+
Sbjct: 459 LMLRRVALKNVDISPSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLA 517
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 109 IQPHW-----HLDTLHVSKNFFQGNIPLEI-GVYFPRLVYLNLSRNDFNGSIPSSIGDMN 162
IQ W +D +S F+G + + + + + N+S N F+ +
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC--------FS 278
Query: 163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY 222
L+ LDL+ L+ E+P LV G L+ LVLS N L L + N
Sbjct: 279 GLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 223 CTGEI-PKSLSNCSPLEGLYMSDNNLYGN--IPAWLGNLSSLNDIMMAINHLQGPIPLE- 278
E+ L N L L +S +++ + L NLS L + ++ N P+ L+
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE---PLSLKT 393
Query: 279 --FCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSK--NMLYGPLKYGT---FFNRS 331
F + LE+LDL+ + + S Q +HL K N+ + L + F
Sbjct: 394 EAFKECPQLELLDLAFTRLKVK----DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 332 SIVTLDLSYNSF-SGNIPYW--IERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSN 388
++ L+L N F GNI ++ L RL L+L+ +L + LK + +DLS+
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 389 NNL 391
N L
Sbjct: 510 NRL 512
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 38/228 (16%)
Query: 289 DLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 348
D+ + +IS + +++ ++L K+ + + TF S + LDL+ S +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELP 294
Query: 349 YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP------GCLDNT 402
+ L+ L+ L+L+ N E LC++ L++ ++ G GCL+N
Sbjct: 295 SGLVGLSTLKKLVLSANKFEN-----LCQISASNFPSLTHLSIKGNTKRLELGTGCLEN- 348
Query: 403 SLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE--IPPQIGKLTSIRALNFSHNN 460
L + +DLS + + Q+ L+ +++LN S+N
Sbjct: 349 ---------------------LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ-LVELNVLAVFSVAHN 507
+ +F Q+E LD+++ L K L++L V +++H+
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 441 IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE-LNVL 499
+P ++ + ++ S+N ++ + SFSN+ Q+ +L +SYN L IPP+ + L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 500 AVFSVAHNNLSGKIPEWT-AQFTTFKEDSYEGNPLLCGKPLPDCDV 544
+ S+ N++S +PE + + NPL C DC++
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC-----DCNM 144
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 186 CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245
C L+ +V N G K R + L+LD N T +PK LSN L + +S+N
Sbjct: 8 CTCLDTVVRCSN--KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNN 64
Query: 246 NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296
+ N++ L ++++ N L+ P F L L +L L N+IS
Sbjct: 65 RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 371 VPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGV 430
VP +L K L LIDLSNN + L N S N + ++ +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRI-----STLSNQSFSN-----------------MTQLLTL 83
Query: 431 DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
LS N+L P L S+R L+ N+++ V +F++L + L + N L
Sbjct: 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 47/229 (20%)
Query: 154 IPSSIGD-MNSLKFLDLSHNQLTGE-IPEHLVIGCF-NLEYLVLSENSLHGQLFYKKIYL 210
+P S + SL+FLDLS N + E + G + +L+ LVLS+N
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN------------- 371
Query: 211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP---AWLGNLSSLNDIMMA 267
HL + TGEI +L N + L+ N + +P W + LN
Sbjct: 372 ------HLRSMQKTGEILLTLKNLTSLD----ISRNTFHPMPDSCQWPEKMRFLNLSSTG 421
Query: 268 INHLQGPIPLEFCQLNYLEILDLSENNI---SGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324
I ++ IP LE+LD+S NN+ S LP +Q++++S+N L L
Sbjct: 422 IRVVKTCIP------QTLEVLDVSNNNLDSFSLFLPR------LQELYISRNKL-KTLPD 468
Query: 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN 373
+ F ++ + +S N +RLT L+ + L N + P
Sbjct: 469 ASLF--PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 33/113 (29%)
Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE---NSLHGQLFYKKIY 209
SIPS G ++K LDLS N++T I + C NL+ L+L N++ G FY
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFY---- 71
Query: 210 LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLN 262
+ LE L +SDN+L +W G LSSL
Sbjct: 72 -----------------------SLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 285 LEILDLSENNIS----GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
++ LDLS N I+ G L +C++ QV + K+ ++ F++ S+ LDLS
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACAN----LQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83
Query: 341 NSFSGNIPYWIERLTRLRYLILANN 365
N S W L+ L+YL L N
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 145 LSRNDFNG----SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN 197
L+R NG +P+ I ++++L+ LDLSHN+LT +P L CF L+Y +N
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYFYFFDN 303
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGV 464
L ++Y L+ N LT E+P +I L+++R L+ SHN LT +
Sbjct: 249 LTRLY---LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 79/180 (43%), Gaps = 5/180 (2%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPS-SIGDMNSLKFLDLSHNQ 173
L+TL + N IP VY +L L L RN+ SIPS + + SL+ LDL +
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWL-RNNPIESIPSYAFNRIPSLRRLDLGELK 171
Query: 174 LTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSN 233
I E G NL YL L+ +L + L KL L L N+ + P S
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
L+ L+M + + NL SL +I +A N+L F L++LE + L N
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 47/219 (21%)
Query: 279 FCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 338
F L +LEIL LS N+I ++ G F +++ TL+L
Sbjct: 84 FKHLRHLEILQLSRNHIR------------------------TIEIGAFNGLANLNTLEL 119
Query: 339 SYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC 398
N + L++L+ L L NN +E R+ LR +DL G
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL----------GE 169
Query: 399 LDNTSLHNNGDNDGSSAPTRYKG------------KPLNKMYGVDLSCNKLTGEIPPQIG 446
L S + G +G S RY PL K+ +DLS N L+ P
Sbjct: 170 LKRLSYISEGAFEGLSN-LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
L ++ L + + + +F NL+ + +++++NNL
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 53/292 (18%)
Query: 204 FYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLND 263
F K I +RK R E+P +S + L L+ +N + +L L
Sbjct: 45 FSKVICVRKNLR----------EVPDGISTNTRLLNLH--ENQIQIIKVNSFKHLRHLEI 92
Query: 264 IMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS--SHSTIQQVHLSKNMLYGP 321
+ ++ NH++ F L L L+L +N ++ T+P+ + S ++++ L N +
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI 151
Query: 322 LKYGTFFNR-SSIVTLDL------SYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQ 374
Y FNR S+ LDL SY S E L+ LRYL LA NL E+PN
Sbjct: 152 PSYA--FNRIPSLRRLDLGELKRLSYISEGA-----FEGLSNLRYLNLAMCNLR-EIPN- 202
Query: 375 LCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSC 434
L L +L +DLS N+L PG +H L K++ +
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGL-MH------------------LQKLWMIQSQI 243
Query: 435 NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
+ L S+ +N +HNNLT + F+ L +E + + +N N
Sbjct: 244 QVIERN---AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%)
Query: 255 LGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC--SSHSTIQQVH 312
L L++L +++ N LQ F +L L+ L L EN + +LP + + ++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 313 LSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVP 372
L+ N L L G F +++ LDLSYN ++LT+L+ L L N L+
Sbjct: 140 LAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 373 NQLCRLKQLRLIDLSNNNLFGQIPG 397
RL L+ I L +N PG
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 351 IERLTRLRYLILANNNLEGEVPN----QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 406
++ LT L YLIL N L+ +PN +L LK+L L++ +L + L N + N
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 407 NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP 466
N S P K L + +DLS N+L KLT ++ L N L V
Sbjct: 140 LAHNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 467 VSFSNLKQVE 476
F L ++
Sbjct: 199 GVFDRLTSLQ 208
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 447 KLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
KLT++ LN +HN L + F L + LD+SYN L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 140 LVYLNLSRNDFNGSIPSSIGD-MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198
L YLNL+ N S+P + D + +L LDLS+NQL +PE + L+ L L +N
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ 192
Query: 199 LH 200
L
Sbjct: 193 LK 194
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM--NSLKFLDLSHNQLTGEIPEHLV 183
+G+I + V P L YL+LSRN + S S D+ NSL+ LDLS N I
Sbjct: 334 KGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANF 390
Query: 184 IGCFNLEYLVLSENSLHGQL-FYKKIYLRKLARLHLDANYCTGEIPKS--LSNCSPLEGL 240
+G L++L ++L F + L KL L+LD +Y +I + L L
Sbjct: 391 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKL--LYLDISYTNTKIDFDGIFLGLTSLNTL 448
Query: 241 YMSDN----NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295
M+ N N N+ A NL+ L+ + + + F L+ L++L++S NN+
Sbjct: 449 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV---FDTLHRLQLLNMSHNNL 504
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYN 483
IG+L +++ LN +HN + +P FSNL + +D+SYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 5/162 (3%)
Query: 141 VYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN-LEYLVLSENSL 199
+LN ++N F S+ + L+ L L N L L+ + LE L +S NSL
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415
Query: 200 HGQLFYKKI-YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNL 258
+ + + + + L+L +N TG + + L + L+ NN +IP + +L
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTHL 472
Query: 259 SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLP 300
+L ++ +A N L+ F +L L+ + L +N T P
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485
+ + LS N ++ P I L+ +R L SHN + + F + +E LDVS+N L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 486 N 486
Sbjct: 113 Q 113
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 256 GNLSSLNDIMMAINHLQG--PIPLEFCQLNYLEILDLSENNISGTL--PSCSSHSTIQQV 311
L L +++ N L+ + L ++ LE LD+S N+++ +C+ +I +
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 312 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEV 371
+LS NML G + + LDL +N+ +IP + L L+ L +A+N L+
Sbjct: 434 NLSSNMLTGSVFRCL---PPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 372 PNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN-----GDNDGSSAPTRYK----GK 422
RL L+ I L +N PG + N ++ GS AP K GK
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSGSGK 549
Query: 423 PLNKM 427
P+ +
Sbjct: 550 PVRSI 554
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN 197
PR L+LS+N + I ++ L+ L LSHN++ + H+ + +LEYL +S N
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHN 110
Query: 198 SLH 200
L
Sbjct: 111 RLQ 113
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 126 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM--NSLKFLDLSHNQLTGEIPEHLV 183
+G+I + V P L YL+LSRN + S S D+ NSL+ LDLS N I
Sbjct: 339 KGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANF 395
Query: 184 IGCFNLEYLVLSENSLHGQL-FYKKIYLRKLARLHLDANYCTGEIPKS--LSNCSPLEGL 240
+G L++L ++L F + L KL L+LD +Y +I + L L
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKL--LYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 241 YMSDN----NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295
M+ N N N+ A NL+ L+ + + + F L+ L++L++S NN+
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV---FDTLHRLQLLNMSHNNL 509
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYN 483
IG+L +++ LN +HN + +P FSNL + +D+SYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 47/229 (20%)
Query: 154 IPSSIGD-MNSLKFLDLSHNQLTGE-IPEHLVIGCF-NLEYLVLSENSLHGQLFYKKIYL 210
+P S + SL+FLDLS N + E + G + +L+ LVLS+N
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN------------- 397
Query: 211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP---AWLGNLSSLNDIMMA 267
HL + TGEI +L N + L+ N + +P W + LN
Sbjct: 398 ------HLRSMQKTGEILLTLKNLTSLD----ISRNTFHPMPDSCQWPEKMRFLNLSSTG 447
Query: 268 INHLQGPIPLEFCQLNYLEILDLSENNI---SGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324
I ++ IP LE+LD+S NN+ S LP +Q++++S+N L L
Sbjct: 448 IRVVKTCIP------QTLEVLDVSNNNLDSFSLFLPR------LQELYISRNKL-KTLPD 494
Query: 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN 373
+ F ++ + ++ N +RLT L+ + L N + P
Sbjct: 495 ASLF--PVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 541
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 33/113 (29%)
Query: 153 SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE---NSLHGQLFYKKIY 209
SIPS G ++K LDLS N++T I + C NL+ L+L N++ G FY
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFY---- 97
Query: 210 LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLN 262
+ LE L +SDN+L +W G LSSL
Sbjct: 98 -----------------------SLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 127
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 285 LEILDLSENNIS----GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 340
++ LDLS N I+ G L +C++ QV + K+ ++ F++ S+ LDLS
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACAN----LQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 109
Query: 341 NSFSGNIPYWIERLTRLRYLILANN 365
N S W L+ L+YL L N
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++NQL
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
+ LE L +++N L L L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NN L ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++NQL
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
+ LE L +++N L L L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NN L ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGN-LSSLNDIMMAINHL 271
+ LE L +++NNL +PA L N L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRAELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NNNL ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++N L
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
+ LE L +++NNL L L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRAELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NNNL ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++N L
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGN-LSSLNDIMMAINHL 271
+ LE L +++NNL +PA L N L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRAELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NNNL ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++N L
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++NQL
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
+ LE L +++N L L L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NN L ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 98/234 (41%), Gaps = 28/234 (11%)
Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLVIGCF 187
+P + P L L L RND S+P I + L L +S+N L I +
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATT 165
Query: 188 NLEYLVLSEN-------SLHGQLFYKKIYLRKLARL-------HLDANYCTGEIPKSLSN 233
+L+ L LS N SL LF+ + L+ L LDA++ + + + N
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225
Query: 234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
L L + NNL AWL N L ++ ++ N L+ + F ++ LE L +S N
Sbjct: 226 VE-LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 294 NISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR--------SSIVTLDLS 339
+ T++ + LS N L + F+R +SIVTL LS
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 336
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 332 SIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
+I L + +N+ P+ + + L L+L N+L +L + +SNNNL
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPL--NKMYGVDLSCNKLTGEIPPQIGKLT 449
++D A T + L N++ VDLS IP
Sbjct: 154 --------------ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL------IP------- 186
Query: 450 SIRALNFSHNNL-TGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
S+ N S+N L T IP++ VE LD S+N++N P VEL +L + HNN
Sbjct: 187 SLFHANVSYNLLSTLAIPIA------VEELDASHNSINVVRGPVNVELTIL---KLQHNN 237
Query: 509 LSG 511
L+
Sbjct: 238 LTD 240
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 45/132 (34%)
Query: 267 AINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT 326
+IN ++GP+ +E L IL L NN++ T
Sbjct: 216 SINVVRGPVNVE------LTILKLQHNNLTDT--------------------------AW 243
Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN-----NLEGE-VPNQLCRLKQ 380
N +V +DLSYN + + ++ RL L ++NN NL G+ +P
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT------- 296
Query: 381 LRLIDLSNNNLF 392
L+++DLS+N+L
Sbjct: 297 LKVLDLSHNHLL 308
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++NQL
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
+ LE L +++N L L L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NN L ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 22/119 (18%)
Query: 422 KPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVS 481
K L + ++LS N ++ +I G LTS++ LNFS N +T + P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNTIS-DISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 482 YNNLNGKIPPQLVELNVLAVFS-----VAHNNLSGKIPEWT--AQFTTFKEDSYEGNPL 533
N ++ +++VLA + +A NN +I + T T E S GN L
Sbjct: 182 SN--------KVSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 229
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN 365
+++ Q++L N L L G F +S+ L+LS N ++LT+L+ L L N
Sbjct: 52 TSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 366 NLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS------LHNNGDNDGSSAPTRY 419
L+ +L QL+ + L N L G D + LH+N D + RY
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWDCTCPGIRY 169
Query: 420 KGKPLNKMYGV 430
+ +NK GV
Sbjct: 170 LSEWINKHSGV 180
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 37 LHLSENLLY-TFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL 93
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 94 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 145
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
+ LE L +++NNL L L +L+ +++ N L
Sbjct: 146 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++N L
Sbjct: 103 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 162 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 214
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 57 RLTQLN-LDRCELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 106
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NNNL ++P
Sbjct: 107 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELP 165
Query: 397 GCLDN 401
L N
Sbjct: 166 AGLLN 170
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 98/234 (41%), Gaps = 28/234 (11%)
Query: 129 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLKFLDLSHNQLTGEIPEHLVIGCF 187
+P + P L L L RND S+P I + L L +S+N L I +
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATT 171
Query: 188 NLEYLVLSEN-------SLHGQLFYKKIYLRKLARL-------HLDANYCTGEIPKSLSN 233
+L+ L LS N SL LF+ + L+ L LDA++ + + + N
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231
Query: 234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293
L L + NNL AWL N L ++ ++ N L+ + F ++ LE L +S N
Sbjct: 232 VE-LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Query: 294 NISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR--------SSIVTLDLS 339
+ T++ + LS N L + F+R +SIVTL LS
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 45/132 (34%)
Query: 267 AINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT 326
+IN ++GP+ +E L IL L NN++ T
Sbjct: 222 SINVVRGPVNVE------LTILKLQHNNLTDT--------------------------AW 249
Query: 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN-----NLEGE-VPNQLCRLKQ 380
N +V +DLSYN + + ++ RL L ++NN NL G+ +P
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT------- 302
Query: 381 LRLIDLSNNNLF 392
L+++DLS+N+L
Sbjct: 303 LKVLDLSHNHLL 314
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 332 SIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNL 391
+I L + +N+ P+ + + L L+L N+L +L + +SNNNL
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPL--NKMYGVDLSCNKLTGEIPPQIGKLT 449
++D A T + L N++ VDLS IP
Sbjct: 160 --------------ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL------IP------- 192
Query: 450 SIRALNFSHNNL-TGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
S+ N S+N L T IP++ VE LD S+N++N P VEL +L + HNN
Sbjct: 193 SLFHANVSYNLLSTLAIPIA------VEELDASHNSINVVRGPVNVELTIL---KLQHNN 243
Query: 509 LSG 511
L+
Sbjct: 244 LTD 246
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
+ LE L +++NNL L L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NNNL ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++N L
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 403 SLHNNGDNDGSSAPTRYKGKPLNK-MYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNL 461
S NG GSS L + + +DLS N++T + + +++AL + N +
Sbjct: 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88
Query: 462 TGVIPVSFSNLKQVESLDVSYNNLN 486
+ SFS+L +E LD+SYN L+
Sbjct: 89 NTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 403 SLHNNGDNDGSSAPTRYKGKPLNK-MYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNL 461
S NG GSS L + + +DLS N++T + + +++AL + N +
Sbjct: 3 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 62
Query: 462 TGVIPVSFSNLKQVESLDVSYNNLN 486
+ SFS+L +E LD+SYN L+
Sbjct: 63 NTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNG 487
IG L +++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNG 487
IG L +++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNG 487
IG L +++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNG 487
IG L +++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 445 IGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNG 487
IG L +++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196
P LV L L RN G P++ + ++ L L N++ EI + +G L+ L L +
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYD 111
Query: 197 NSLHGQLFYKKIYLRKLARLHLDAN 221
N + + +L L L+L +N
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASN 136
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 35/90 (38%)
Query: 446 GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505
G+L + L N LTG+ P +F ++ L + N + + L+ L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 535
N +S +P + + NP C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQL-CRLKQLRL 383
G F +V L+L N +G P E + ++ L L N ++ E+ N++ L QL+
Sbjct: 48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKT 106
Query: 384 IDLSNNNLFGQIPG 397
++L +N + +PG
Sbjct: 107 LNLYDNQISCVMPG 120
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG- 176
LH+S+N L + + RL LNL R + G + L LDLSHNQL
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
Query: 177 -----EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSL 231
+P V+ L +L G L +L L+L N P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLL 144
Query: 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271
+ LE L +++N+L L L +L+ +++ N L
Sbjct: 145 TPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQL 174
L L VS N ++PL L L L N+ P + L+ L L++N L
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Query: 175 TGEIPEHLVIGCFNLEYLVLSENSLHG--QLFYKKIYLRKLARLHLDANYCTGEI 227
T E+P L+ G NL+ L+L ENSL+ + F+ +L A LH + C EI
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEI 213
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSSIVTL 336
QLN L+ +L++ + GTLP + + LS N L PL T ++ L
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLP------VLGTLDLSHNQLQSLPLLGQTL---PALTVL 105
Query: 337 DLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396
D+S+N + + L L+ L L N L+ P L +L + L+NN+L ++P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL-TELP 164
Query: 397 GCLDN 401
L N
Sbjct: 165 AGLLN 169
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 331 SSIVTLDLSYNSFSGNIPYWI-ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN 389
S LDLS+N+ S W RLT L L+L++N+L + LR +DLS+N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 390 NL 391
+L
Sbjct: 99 HL 100
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 22/119 (18%)
Query: 422 KPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVS 481
K L + ++LS N ++ +I G LTS++ L+FS N +T + P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNTIS-DISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 482 YNNLNGKIPPQLVELNVLAVFS-----VAHNNLSGKIPEWT--AQFTTFKEDSYEGNPL 533
N ++ +++VLA + +A NN +I + T T E S GN L
Sbjct: 182 SN--------KVSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 229
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 22/119 (18%)
Query: 422 KPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVS 481
K L + ++LS N ++ +I G LTS++ L+FS N +T + P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNTIS-DISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 482 YNNLNGKIPPQLVELNVLAVFS-----VAHNNLSGKIPEWT--AQFTTFKEDSYEGNPL 533
N ++ +++VLA + +A NN +I + T T E S GN L
Sbjct: 182 SN--------KVSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 229
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 11/226 (4%)
Query: 288 LDLSENNISGTLPSCSSH-STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346
L+L ENNI H ++ + L +N + ++ G F +S+ TL+L N +
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVI 138
Query: 347 IPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF-----GQIPGCLDN 401
E L++LR L L NN +E R+ L +DL G G L N
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFN 197
Query: 402 TSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNL 461
N G + P PL + +++S N P L+S++ L ++ +
Sbjct: 198 LKYLNLGMCNIKDMPNL---TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 462 TGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHN 507
+ + +F L + L++++NNL+ L L + HN
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 22/165 (13%)
Query: 322 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQL 381
L TF + + L+L YN + LT L L LANN L L QL
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Query: 382 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEI 441
+ L N L G D L K+ + L+ N+L
Sbjct: 110 DKLYLGGNQLKSLPSGVFDR----------------------LTKLKELRLNTNQLQSIP 147
Query: 442 PPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
KLT+++ L+ S N L V +F L +++++ + N +
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 288 LDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN---SFS 344
L LS NNI + S S ++ + L +N++ + ++ L +SYN S S
Sbjct: 54 LALSTNNIE-KISSLSGMENLRILSLGRNLIKKIENLDAVAD--TLEELWISYNQIASLS 110
Query: 345 GNIPYWIERLTRLRYLILANNNLE--GEVPNQLCRLKQLRLIDLSNNNLF 392
G IE+L LR L ++NN + GE+ ++L L +L + L+ N L+
Sbjct: 111 G-----IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLY 154
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 288 LDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN---SFS 344
L LS NNI + S S ++ + L +N++ + ++ L +SYN S S
Sbjct: 53 LALSTNNIE-KISSLSGMENLRILSLGRNLIKKIENLDAVAD--TLEELWISYNQIASLS 109
Query: 345 GNIPYWIERLTRLRYLILANNNLE--GEVPNQLCRLKQLRLIDLSNNNLF 392
G IE+L LR L ++NN + GE+ ++L L +L + L+ N L+
Sbjct: 110 G-----IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLY 153
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 22/165 (13%)
Query: 322 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQL 381
L TF + + L+L YN + LT L L LANN L L QL
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Query: 382 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEI 441
+ L N L G D L K+ + L+ N+L
Sbjct: 110 DKLYLGGNQLKSLPSGVFDR----------------------LTKLKELRLNTNQLQSIP 147
Query: 442 PPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486
KLT+++ L+ S N L V +F L +++++ + N +
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3HI1|G Chain G, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
pdb|3HI1|J Chain J, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
Length = 321
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 274 PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVH 312
PIP+ +C IL ++ +GT P C++ ST+Q H
Sbjct: 50 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTH 87
>pdb|2QAD|A Chain A, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|E Chain E, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 322
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 274 PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVH 312
PIP+ +C IL ++ +GT P C++ ST+Q H
Sbjct: 51 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTH 88
>pdb|1G9N|G Chain G, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|G Chain G, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1YYL|G Chain G, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYL|P Chain P, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYM|G Chain G, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|1YYM|P Chain P, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|G Chain G, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|P Chain P, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|G Chain G, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|P Chain P, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
Length = 313
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 274 PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVH 312
PIP+ +C IL ++ +GT P C++ ST+Q H
Sbjct: 70 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTH 107
>pdb|4DVR|G Chain G, Crystal Structure Of Yu2 Gp120 Core In Complex With Fab
48d And Nbd- 557
Length = 313
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 274 PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVH 312
PIP+ +C IL ++ +GT P C++ ST+Q H
Sbjct: 57 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTH 94
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 432 LSC--NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNL-KQVESLDVSYNNLNGK 488
L C N+L G++P G + +LN ++N +T IP +F +QVE+L ++N L K
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL--K 390
Query: 489 IPPQLVELNVLAVFSV 504
P + + ++V S
Sbjct: 391 YIPNIFDAKSVSVXSA 406
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 449 TSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508
+S+R L+ SH + + F LK ++ L+++YN +N L+ L V ++++N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 509 L 509
L
Sbjct: 326 L 326
>pdb|3TGQ|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|B Chain B, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|C Chain C, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|D Chain D, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
Length = 352
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 274 PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVH 312
PIP+ +C IL ++ +GT P C++ ST+Q H
Sbjct: 96 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTH 133
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 156 SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLAR 215
S+I + S+K LDL+ Q+T P + G NL+ L L N + L L
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQY 161
Query: 216 LHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPI 275
L + N P L+N S L L DN + P L +L +L ++ + N +
Sbjct: 162 LSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVS 217
Query: 276 PL 277
PL
Sbjct: 218 PL 219
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 11/162 (6%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV--------IGCFN 188
F L L L+RN ++P+SI +N L+ L + E+PE L G N
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 189 LEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY 248
L+ L L + L L+ L L + N + ++ + LE L +
Sbjct: 185 LQSLRLEWTGIRS-LPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 249 GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDL 290
N P G + L +++ +PL+ +L LE LDL
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL 189
F + LN+ + + I + G +N FL + +L G PE +++G F +
Sbjct: 51 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKV 103
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL 189
F + LN+ + + I + G +N FL + +L G PE +++G F +
Sbjct: 38 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKV 90
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN 365
S+ ++ L N L L +G F + + L LS N ++LT+L L L N
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 366 NLEGEVPNQLC-RLKQLRLIDLSNNNLFGQIPGCLDN-TSLHN 406
L+ +PN + +L QL+ + L N L G D TSL
Sbjct: 87 KLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 137 FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL 189
F + LN+ + + I + G +N FL + +L G PE +++G F +
Sbjct: 33 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKV 85
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI 251
LV+ N+ G L L L LD N + + + LE L ++ NL G +
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Query: 252 PA--WLGNLSSLNDIMMAINHLQGPIPLEF-CQLNYLEILDLSENNISG----------- 297
+ + L+SL +++ N+++ P F + +LDL+ N +
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 298 ---TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIER 353
TL SS T+Q ++ G K G F +SI TLDLS N F ++ + +
Sbjct: 180 KHFTLLRLSS-ITLQDMN---EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235
Query: 354 L--TRLRYLILANN 365
+ T+++ LIL+N+
Sbjct: 236 IAGTKIQSLILSNS 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,976,895
Number of Sequences: 62578
Number of extensions: 808680
Number of successful extensions: 2283
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1563
Number of HSP's gapped (non-prelim): 380
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)