Query 038273
Match_columns 623
No_of_seqs 455 out of 4286
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.1E-58 4.6E-63 527.5 40.2 522 8-538 87-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.2E-57 6.8E-62 517.9 38.9 495 3-508 107-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.9E-44 6.3E-49 348.4 7.5 380 117-551 82-464 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.3E-41 7.2E-46 327.2 6.6 366 68-481 82-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.5E-41 7.5E-46 313.2 -13.6 455 41-535 46-542 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.6E-41 7.8E-46 313.1 -14.8 450 16-510 47-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 4.7E-35 1E-39 286.6 -2.8 364 41-486 8-375 (1255)
8 KOG0618 Serine/threonine phosp 100.0 1.7E-34 3.7E-39 295.4 -5.2 467 16-531 23-510 (1081)
9 KOG0618 Serine/threonine phosp 100.0 2.9E-34 6.3E-39 293.8 -4.4 448 9-507 40-510 (1081)
10 KOG0444 Cytoskeletal regulator 100.0 7.1E-33 1.5E-37 271.4 -2.9 369 11-392 4-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.1E-27 2.5E-32 223.1 -3.7 276 65-367 68-358 (498)
12 PLN03210 Resistant to P. syrin 99.9 9.9E-24 2.2E-28 241.8 26.3 340 108-484 553-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 5.6E-23 1.2E-27 235.7 26.2 342 129-508 549-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 9.2E-27 2E-31 217.1 -4.8 402 114-531 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.3E-20 9.2E-25 196.6 17.3 192 165-392 204-395 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 8.9E-20 1.9E-24 194.1 18.2 264 65-399 202-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.9E-18 8.5E-23 183.0 13.3 244 41-318 179-427 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.5E-18 5.4E-23 184.5 11.2 248 64-344 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.4E-19 7.4E-24 178.2 -0.2 61 473-533 250-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.8E-18 8.2E-23 170.7 2.4 277 93-390 2-318 (319)
21 KOG0617 Ras suppressor protein 99.7 2.5E-18 5.5E-23 142.6 -3.7 181 327-535 29-213 (264)
22 KOG0617 Ras suppressor protein 99.6 3.9E-17 8.5E-22 135.5 -3.3 157 37-201 30-187 (264)
23 PLN03150 hypothetical protein; 99.5 8.2E-14 1.8E-18 149.5 10.6 118 426-543 419-538 (623)
24 PLN03150 hypothetical protein; 99.2 1.6E-10 3.4E-15 124.4 11.2 113 380-514 419-532 (623)
25 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.6E-16 118.5 2.1 212 41-272 122-339 (505)
26 KOG3207 Beta-tubulin folding c 99.1 9.4E-12 2E-16 119.2 1.3 186 86-271 118-313 (505)
27 KOG0532 Leucine-rich repeat (L 99.1 1.9E-12 4.2E-17 127.7 -3.5 174 306-511 75-248 (722)
28 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.5E-16 112.7 1.3 86 426-514 330-416 (490)
29 PF14580 LRR_9: Leucine-rich r 99.1 9.9E-11 2.1E-15 102.6 6.8 129 61-195 16-148 (175)
30 KOG1909 Ran GTPase-activating 99.1 7.5E-12 1.6E-16 116.6 -1.5 243 41-296 31-311 (382)
31 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.8E-15 119.6 7.1 155 332-515 141-295 (394)
32 PF14580 LRR_9: Leucine-rich r 99.1 9E-11 2E-15 102.9 4.8 108 112-224 18-126 (175)
33 COG4886 Leucine-rich repeat (L 99.1 2.4E-10 5.3E-15 117.6 8.8 200 44-255 97-297 (394)
34 KOG0532 Leucine-rich repeat (L 99.1 6.6E-12 1.4E-16 124.0 -2.7 172 114-296 76-247 (722)
35 KOG1909 Ran GTPase-activating 99.1 3.6E-11 7.9E-16 112.1 1.9 134 185-318 155-310 (382)
36 KOG1259 Nischarin, modulator o 99.1 3.6E-11 7.8E-16 109.5 1.1 105 426-535 308-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.0 4E-10 8.6E-15 123.8 6.8 128 41-173 524-653 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 5.7E-10 1.2E-14 80.3 3.5 60 450-509 2-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.9 7E-10 1.5E-14 121.8 4.4 128 64-197 523-652 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 9.7E-10 2.1E-14 79.0 3.7 61 425-485 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 5.7E-10 1.2E-14 114.9 -1.5 247 232-514 69-322 (414)
42 KOG0531 Protein phosphatase 1, 98.8 8.3E-10 1.8E-14 113.7 -0.7 247 209-490 70-322 (414)
43 KOG2120 SCF ubiquitin ligase, 98.7 3.1E-10 6.7E-15 103.5 -4.6 224 17-245 139-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.6 2.8E-10 6E-15 115.8 -10.4 179 9-200 104-292 (1096)
45 KOG1859 Leucine-rich repeat pr 98.5 5E-09 1.1E-13 106.9 -4.4 109 424-537 186-295 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.5 4.2E-09 9.2E-14 96.2 -4.9 87 114-200 186-273 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.3 9.4E-08 2E-12 86.4 0.2 243 41-296 31-316 (388)
48 KOG2982 Uncharacterized conser 98.3 1.9E-07 4.2E-12 85.6 1.4 84 258-341 70-156 (418)
49 KOG2982 Uncharacterized conser 98.3 3.2E-07 6.8E-12 84.2 1.7 82 305-386 198-286 (418)
50 KOG4579 Leucine-rich repeat (L 98.1 3.5E-07 7.7E-12 74.0 -1.4 36 356-392 28-66 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.1 1.9E-06 4E-11 78.2 2.4 214 9-223 25-284 (388)
52 PF13306 LRR_5: Leucine rich r 98.0 1.3E-05 2.9E-10 67.8 6.5 60 59-121 7-66 (129)
53 KOG1644 U2-associated snRNP A' 98.0 9.5E-06 2.1E-10 70.6 5.4 59 65-126 43-101 (233)
54 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.5E-10 70.1 5.9 104 116-224 22-126 (233)
55 KOG4579 Leucine-rich repeat (L 98.0 4.3E-07 9.3E-12 73.5 -2.6 112 42-182 29-142 (177)
56 PF13306 LRR_5: Leucine rich r 98.0 1.9E-05 4.2E-10 66.8 7.1 127 79-213 2-128 (129)
57 KOG3665 ZYG-1-like serine/thre 98.0 2.8E-06 6E-11 91.5 1.8 151 41-194 123-282 (699)
58 PF12799 LRR_4: Leucine Rich r 97.9 8.7E-06 1.9E-10 53.3 2.3 36 450-486 2-37 (44)
59 KOG4341 F-box protein containi 97.9 4.7E-07 1E-11 87.1 -5.6 277 41-317 139-437 (483)
60 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 52.5 2.8 38 473-511 1-38 (44)
61 PRK15386 type III secretion pr 97.8 3.7E-05 8.1E-10 76.2 7.3 72 305-390 51-123 (426)
62 KOG3665 ZYG-1-like serine/thre 97.8 4.3E-06 9.3E-11 90.1 0.7 150 64-217 122-281 (699)
63 KOG4341 F-box protein containi 97.8 5.1E-07 1.1E-11 86.9 -6.9 278 14-294 138-437 (483)
64 PRK15386 type III secretion pr 97.7 0.00013 2.9E-09 72.4 8.7 55 62-123 50-104 (426)
65 KOG1947 Leucine rich repeat pr 97.3 2.4E-05 5.1E-10 83.2 -3.2 63 160-222 241-306 (482)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00035 7.6E-09 63.8 2.4 101 89-194 43-150 (260)
67 KOG1947 Leucine rich repeat pr 97.0 6.1E-05 1.3E-09 80.1 -3.8 189 62-261 186-389 (482)
68 KOG2739 Leucine-rich acidic nu 96.6 0.0015 3.3E-08 59.8 3.2 103 424-528 42-150 (260)
69 KOG2123 Uncharacterized conser 96.6 8E-05 1.7E-09 68.2 -5.4 38 159-199 38-75 (388)
70 KOG2123 Uncharacterized conser 96.5 0.00019 4.1E-09 65.8 -3.4 84 112-201 18-102 (388)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.3E-07 32.0 0.9 12 475-486 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.3 0.016 3.4E-07 31.3 0.5 19 451-470 2-20 (22)
73 KOG4308 LRR-containing protein 93.0 0.001 2.2E-08 68.8 -10.4 90 160-249 202-304 (478)
74 PF13504 LRR_7: Leucine rich r 92.8 0.066 1.4E-06 26.8 1.2 13 65-77 2-14 (17)
75 smart00370 LRR Leucine-rich re 92.5 0.13 2.9E-06 29.0 2.4 22 63-85 1-22 (26)
76 smart00369 LRR_TYP Leucine-ric 92.5 0.13 2.9E-06 29.0 2.4 22 63-85 1-22 (26)
77 TIGR00864 PCC polycystin catio 92.2 0.032 6.9E-07 67.6 -0.9 43 503-550 1-43 (2740)
78 smart00369 LRR_TYP Leucine-ric 91.6 0.18 3.9E-06 28.4 2.3 23 161-184 1-23 (26)
79 smart00370 LRR Leucine-rich re 91.6 0.18 3.9E-06 28.4 2.3 23 161-184 1-23 (26)
80 KOG0473 Leucine-rich repeat pr 90.5 0.0091 2E-07 53.6 -5.7 82 425-509 42-123 (326)
81 KOG4308 LRR-containing protein 90.0 0.0022 4.7E-08 66.5 -11.8 185 16-201 89-304 (478)
82 KOG3864 Uncharacterized conser 89.4 0.023 5.1E-07 50.1 -4.0 81 91-171 103-185 (221)
83 KOG0473 Leucine-rich repeat pr 89.0 0.016 3.6E-07 52.0 -5.3 86 445-533 38-123 (326)
84 PF13516 LRR_6: Leucine Rich r 85.0 0.25 5.3E-06 27.2 -0.2 14 473-486 2-15 (24)
85 KOG3864 Uncharacterized conser 84.1 0.15 3.4E-06 45.1 -1.9 35 139-173 102-136 (221)
86 KOG4242 Predicted myosin-I-bin 79.6 5.8 0.00013 40.2 6.8 59 333-391 415-480 (553)
87 smart00365 LRR_SD22 Leucine-ri 74.9 2.6 5.7E-05 23.8 1.8 14 473-486 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 71.7 26 0.00057 35.8 8.9 61 65-125 215-280 (553)
89 smart00364 LRR_BAC Leucine-ric 71.2 2.8 6.2E-05 23.6 1.3 13 474-486 3-15 (26)
90 PF15102 TMEM154: TMEM154 prot 66.7 4.2 9.2E-05 34.1 2.0 30 564-593 58-88 (146)
91 smart00368 LRR_RI Leucine rich 65.0 5.2 0.00011 23.0 1.7 14 473-486 2-15 (28)
92 KOG3763 mRNA export factor TAP 61.6 4.3 9.3E-05 42.0 1.4 37 62-99 216-254 (585)
93 KOG3763 mRNA export factor TAP 57.7 4.9 0.00011 41.7 1.1 62 448-511 217-284 (585)
94 smart00367 LRR_CC Leucine-rich 45.8 15 0.00033 20.4 1.5 13 13-25 1-13 (26)
95 TIGR00864 PCC polycystin catio 35.0 23 0.00049 44.7 2.0 32 455-486 1-32 (2740)
96 smart00082 LRRCT Leucine rich 32.2 8.6 0.00019 25.7 -1.2 18 531-553 1-18 (51)
97 PF02009 Rifin_STEVOR: Rifin/s 27.1 33 0.00071 33.3 1.3 17 577-593 268-284 (299)
98 PHA03099 epidermal growth fact 23.4 75 0.0016 26.0 2.4 12 582-593 118-129 (139)
99 PF08374 Protocadherin: Protoc 22.7 72 0.0016 28.9 2.5 24 562-585 36-59 (221)
100 PF08693 SKG6: Transmembrane a 22.6 78 0.0017 20.1 1.9 10 567-576 15-24 (40)
101 PF15050 SCIMP: SCIMP protein 22.6 46 0.00099 26.7 1.1 28 566-593 9-36 (133)
102 PF11980 DUF3481: Domain of un 20.3 1E+02 0.0022 23.1 2.4 21 560-580 12-32 (87)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-58 Score=527.51 Aligned_cols=522 Identities=32% Similarity=0.487 Sum_probs=410.2
Q ss_pred ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhC
Q 038273 8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN 87 (623)
Q Consensus 8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 87 (623)
+.+..+++|++|+|++|++.+..+... +..+.+|++|++++|.+++.+|. +.+++|++|++++|.+++.+|..+ ..
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~ 162 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GS 162 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hc
Confidence 467788888888888888765444321 11334888888888888777664 467888888888888887777764 78
Q ss_pred CCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEE
Q 038273 88 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFL 167 (623)
Q Consensus 88 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 167 (623)
+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+.+|..+.++++|++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 888888888888888888888888888888888888888778877766 6788888888888888888888888888888
Q ss_pred EccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcC
Q 038273 168 DLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNL 247 (623)
Q Consensus 168 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 247 (623)
++++|.+++.+|..+ .++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 242 ~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 242 DLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 888888886677655 6788888888888888887888888888888888888888888888888888888888888888
Q ss_pred ccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccccccCCCCC
Q 038273 248 YGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGPLKYGT 326 (623)
Q Consensus 248 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~ 326 (623)
.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|... ..++++.+++++|.+.+.++..
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~- 399 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS- 399 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-
Confidence 88888888888888888888888888888888888888888888888887776654 5678888888888887777765
Q ss_pred ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 406 (623)
Q Consensus 327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 406 (623)
+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+....+..
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~ 479 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN 479 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceE
Confidence 77788888888888888888888888888888888888888888887788888888888888888877777654433222
Q ss_pred C--CCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCc
Q 038273 407 N--GDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484 (623)
Q Consensus 407 ~--~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 484 (623)
+ ..+......+ .....+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..|..+++|+.|+|++|+
T Consensus 480 L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 480 LDLSRNQFSGAVP-RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EECcCCccCCccC-hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 1 1111111111 112246678888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273 485 LNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP 538 (623)
Q Consensus 485 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~ 538 (623)
+++.+|..+..+++|+.+++++|++.+.+|.. ..+.++....+.|||.+|+.+
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 88888888888888888888888888877764 356666777778888888643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-57 Score=517.86 Aligned_cols=495 Identities=30% Similarity=0.429 Sum_probs=415.7
Q ss_pred ccCCCccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCCh
Q 038273 3 IPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPN 82 (623)
Q Consensus 3 g~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 82 (623)
|.++...+.++++|++|++++|++.+..+.. ...+|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCcc----ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 4444334569999999999999987654432 233899999999999989999999999999999999999888888
Q ss_pred HHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCC
Q 038273 83 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMN 162 (623)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 162 (623)
.+ .++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+.+++
T Consensus 183 ~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 183 SL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred hh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCC
Confidence 75 89999999999999999989999999999999999999999889988876 78999999999999988999999999
Q ss_pred CCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEEC
Q 038273 163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYM 242 (623)
Q Consensus 163 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 242 (623)
+|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 99999999999987788776 57999999999999999888888999999999999999999888988999999999999
Q ss_pred cCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCcccccc
Q 038273 243 SDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGP 321 (623)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ 321 (623)
++|.+.+..|..++.+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|... .+++|+.|++++|.+++.
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 9999998899999999999999999999988888888888899999999998887777654 578889999999888877
Q ss_pred CCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCcccc
Q 038273 322 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDN 401 (623)
Q Consensus 322 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 401 (623)
.+.. |..++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+..
T Consensus 420 ~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 420 LPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred CChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence 7765 7788888888888888888888777788888888888888877666644 4577888888888888777766554
Q ss_pred ccc-c--CCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEE
Q 038273 402 TSL-H--NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESL 478 (623)
Q Consensus 402 ~~l-~--~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 478 (623)
..- . ....+......+ .....+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+.++++|+.|
T Consensus 498 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhccCEEECcCCcceeeCC-hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 321 1 111111111111 112346799999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcccccCccccccCCCCCeeecccCc
Q 038273 479 DVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508 (623)
Q Consensus 479 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~ 508 (623)
++++|++.+.+|.. ..+..+......+|+
T Consensus 577 ~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 577 NISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred eccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 99999999988865 334445555566665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-44 Score=348.37 Aligned_cols=380 Identities=23% Similarity=0.271 Sum_probs=271.5
Q ss_pred EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273 117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196 (623)
Q Consensus 117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 196 (623)
+|++++|++. .+....+..+++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+ ++.......++.|+.||++.
T Consensus 82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 3455555444 333333333445555555555544 34444444444555555555554 44444334455555555555
Q ss_pred CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc
Q 038273 197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP 276 (623)
Q Consensus 197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (623)
|.|+......|..-.++++|+|++|.++....+.|.++.+|..|.|+.|+++...+..|..+++|+.|++..|++.-..-
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 55444433444444445555555555554444555555555555555555555555555555555555555555553334
Q ss_pred ccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcccc
Q 038273 277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTR 356 (623)
Q Consensus 277 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 356 (623)
..|.++++|+.|.+..|++. .+..++|..+.++++|+|+.|++...-.+|+-+++.
T Consensus 239 ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred hhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccccch
Confidence 44555555555555555443 455667999999999999999999888889999999
Q ss_pred CcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCc
Q 038273 357 LRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK 436 (623)
Q Consensus 357 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 436 (623)
|+.|++++|.|....++.+..+++|+.|++++|+++...++.+..++ .|+.|.|++|.
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~----------------------~Le~LnLs~Ns 352 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS----------------------QLEELNLSHNS 352 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH----------------------Hhhhhcccccc
Confidence 99999999999988899999999999999999999988887776655 89999999999
Q ss_pred ccccCCccccccccCCeeeCCCCcccccCCc---cCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccC
Q 038273 437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPV---SFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKI 513 (623)
Q Consensus 437 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 513 (623)
+.......|..+++|+.|||++|.++..+.+ .|.++++|+.|++.+|++..+...+|..+++|+.|||.+|.+..+.
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence 9988888999999999999999999876664 5889999999999999999888899999999999999999999999
Q ss_pred CCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 038273 514 PEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 551 (623)
Q Consensus 514 ~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~~ 551 (623)
|..|.++ .|++|-+..-.++| +|...|..+|.
T Consensus 433 ~nAFe~m-~Lk~Lv~nSssflC-----DCql~Wl~qWl 464 (873)
T KOG4194|consen 433 PNAFEPM-ELKELVMNSSSFLC-----DCQLKWLAQWL 464 (873)
T ss_pred ccccccc-hhhhhhhcccceEE-----eccHHHHHHHH
Confidence 9999888 99999999999999 66666666664
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-41 Score=327.17 Aligned_cols=366 Identities=22% Similarity=0.218 Sum_probs=197.7
Q ss_pred EEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEeccc
Q 038273 68 YVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSR 147 (623)
Q Consensus 68 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~ 147 (623)
.||+++|++. .+.-..|.++++|+.+++.+|.++. +|...+...+|+.|+|.+|.|+ ++..+-...++.|+.|||+.
T Consensus 82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeccccccc-cCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 3555555444 2333333445555555554444432 2333333334555555555444 33332222344455555555
Q ss_pred CcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCcccc
Q 038273 148 NDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEI 227 (623)
Q Consensus 148 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 227 (623)
|.|+.+.-..|..-.++++|+|++|.|+ .+..+.|.++.+|..|.+++|+++...+..|.++++|+.|+|..|.+....
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 5544333334444444555555555554 444444444445555555555554444444444555555555555444332
Q ss_pred CccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCc
Q 038273 228 PKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHST 307 (623)
Q Consensus 228 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 307 (623)
.-+|.++++|+.|.+..|.+.......|..|.++++|+++.|++......++.++++|+.|++++|.|...
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri--------- 308 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI--------- 308 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee---------
Confidence 33455555555555555555544455555555555555555555555555555566666666666555311
Q ss_pred ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEcc
Q 038273 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS 387 (623)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 387 (623)
..+.+..+++|++|+|++|+++...++.|..+..|++|+|++|.+...-..+|.++++|+.||++
T Consensus 309 ---------------h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 309 ---------------HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred ---------------ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 11124445666666666666666666666667777777777777765556666777777777777
Q ss_pred CCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCc
Q 038273 388 NNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV 467 (623)
Q Consensus 388 ~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 467 (623)
+|.+.+.+.+.-.. | .++++|+.|++.+|++......+|.++.+|++|||.+|.|.++.|+
T Consensus 374 ~N~ls~~IEDaa~~-----------------f--~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 374 SNELSWCIEDAAVA-----------------F--NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred CCeEEEEEecchhh-----------------h--ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 77766544331111 1 1245666666666666655556777777777777777777777777
Q ss_pred cCCCCCCCcEEECC
Q 038273 468 SFSNLKQVESLDVS 481 (623)
Q Consensus 468 ~~~~l~~L~~L~Ls 481 (623)
+|..+ .|++|.++
T Consensus 435 AFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 435 AFEPM-ELKELVMN 447 (873)
T ss_pred ccccc-hhhhhhhc
Confidence 77777 67777554
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-41 Score=313.20 Aligned_cols=455 Identities=27% Similarity=0.341 Sum_probs=268.6
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
-++.+.++.|.+. .+...+.++..|.+|++++|++. +.|+.+ +.+..++.+++++|++.. +|..+..+.+|+.+++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhc
Confidence 4555555555543 22333455555555555555555 445444 445555555555555432 3444555555555555
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
+.|.+. ++|++++.. -.++.++..+|+++ ..|.++..+.+|..+++.+|++. ..|+.... ++.|++|+...|.+.
T Consensus 122 s~n~~~-el~~~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE 196 (565)
T ss_pred ccccee-ecCchHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh
Confidence 555555 455555542 25555555555555 34445555555555555555555 44444432 555555555554443
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 280 (623)
.+|..++.+.+|..|++..|++. ..| .|.+|..|+++.++.|++.....+....++++..||+.+|++. ..|..++
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 34445555555555555555554 333 3555555555555555554222222334555555555555555 3444455
Q ss_pred CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCcccc-------------------------------------ccCC
Q 038273 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLY-------------------------------------GPLK 323 (623)
Q Consensus 281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~-------------------------------------~~~~ 323 (623)
.+++|+.||+++|.+++..+....+ .|+.|-+.+|.+. +..+
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 5555555555555555333333333 4555555555430 0111
Q ss_pred CCC---ccCCCceeEEeCCCCcCCCCCchhhhccc--cCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCc
Q 038273 324 YGT---FFNRSSIVTLDLSYNSFSGNIPYWIERLT--RLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC 398 (623)
Q Consensus 324 ~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 398 (623)
... .....+.+.|++++-+++.+..+.|..-. -.+..+++.|++. ++|..+..+..+.+.-+..|+..+.+|..
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 111 22334567777777777743333343321 2677788888877 66666655555544333334444455554
Q ss_pred cccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEE
Q 038273 399 LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESL 478 (623)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 478 (623)
+.. +++|..|++++|-+. .+|..++.+..|+.|+++.|.+. .+|.....+..++.+
T Consensus 431 l~~----------------------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtl 486 (565)
T KOG0472|consen 431 LSQ----------------------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETL 486 (565)
T ss_pred HHh----------------------hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHH
Confidence 444 458999999999888 78888999999999999999988 788888888888888
Q ss_pred ECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCC
Q 038273 479 DVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 535 (623)
Q Consensus 479 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C 535 (623)
-.++|++....|+.+.++..|.+||+.+|.+. .+|..++.+++++.+.+.|||+.-
T Consensus 487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred HhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 88889999777788999999999999999998 456668899999999999999973
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.6e-41 Score=313.11 Aligned_cols=450 Identities=24% Similarity=0.340 Sum_probs=283.4
Q ss_pred CcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEE
Q 038273 16 LKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLV 95 (623)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 95 (623)
|+.++++.|++....++. -....+..|+++.|+++ ..|++++++..++.++.++|++. .+|+.+ ..+.+|+.++
T Consensus 47 l~~lils~N~l~~l~~dl---~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDL---KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhccHhh---hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhh
Confidence 455555555554433332 12224556666666554 44555566666666666666655 555554 4555566666
Q ss_pred ccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCC
Q 038273 96 LRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLT 175 (623)
Q Consensus 96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 175 (623)
+++|.+.. .++.++.+..|..++-.+|+++ +.|..++. +.++..+++.+|+++...|..+ +++.|++||...|.+.
T Consensus 121 ~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 121 CSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE 196 (565)
T ss_pred ccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh
Confidence 66555533 3444555555555555555555 55555554 3355555555555553322222 2555555555555554
Q ss_pred cccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhc
Q 038273 176 GEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL 255 (623)
Q Consensus 176 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 255 (623)
.+|+.+ +++.+|+-|++..|.+.. .| .|.++..|++++++.|.+.-...+...+++++..||+.+|+++ ..|+.+
T Consensus 197 -tlP~~l-g~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 197 -TLPPEL-GGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred -cCChhh-cchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHH
Confidence 555555 345555555555555542 22 4555555555555555554222222335555555555555554 445555
Q ss_pred cCCCCCCEEECccccccccccccccCCCCCcEEeCcCcccee--------------------------------------
Q 038273 256 GNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG-------------------------------------- 297 (623)
Q Consensus 256 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-------------------------------------- 297 (623)
..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+..
T Consensus 272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 55555555555555555 334445555 55555555554320
Q ss_pred ----eCCCCCCCCcccEEEccCccccccCCCCCccCCC--ceeEEeCCCCcCCCCCchhhhccccCc-EEEccccccccc
Q 038273 298 ----TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRS--SIVTLDLSYNSFSGNIPYWIERLTRLR-YLILANNNLEGE 370 (623)
Q Consensus 298 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~ 370 (623)
..|......+.+.|++++-++ ..+|...|..-. -++..++++|++. ..|..+..+..+. .+.+++|.+. .
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-f 426 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-F 426 (565)
T ss_pred CCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-c
Confidence 111112345678888888777 456666554432 3788999999998 5777676665554 4556666665 8
Q ss_pred CchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccccccc
Q 038273 371 VPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS 450 (623)
Q Consensus 371 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 450 (623)
.|..++.+++|..|++++|.+. .+|..+.. +..|+.|+++.|.+. ..|..+..+..
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~----------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLN-DLPEEMGS----------------------LVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred chHHHHhhhcceeeecccchhh-hcchhhhh----------------------hhhhheecccccccc-cchHHHhhHHH
Confidence 8888999999999999988775 45554443 337999999999998 88998888888
Q ss_pred CCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCccc
Q 038273 451 IRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510 (623)
Q Consensus 451 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 510 (623)
++.+-.++|++..+.|+.+.+|.+|.+|||.+|.+. .+|..++++++|++|++++|++.
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999999999888888999999999999999999 78889999999999999999998
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=4.7e-35 Score=286.60 Aligned_cols=364 Identities=26% Similarity=0.363 Sum_probs=241.7
Q ss_pred cccEEEccCCCCCCC-CCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEE
Q 038273 41 QLESVKLSGSGIHAT-FPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLH 119 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 119 (623)
-++-+++++|.++|. +|.....++.++.|.|....+. .+|+.+ +.+.+|++|.+++|++... -..+..++.|+.++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence 467788888888854 8888888999999999888887 888886 7888999999999987653 34567788889999
Q ss_pred ccCCCCC-CCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc
Q 038273 120 VSKNFFQ-GNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198 (623)
Q Consensus 120 l~~n~l~-~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 198 (623)
+..|++. .-||..++. +..|..||||+|+++ ..|..+.+-.++-+|+|++|+|. +||..+|.++..|-.||+++|+
T Consensus 85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 9888876 358888888 678999999999988 68888888899999999999998 9999999889999999999888
Q ss_pred CccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc-cccchhccCCCCCCEEECccccccccccc
Q 038273 199 LHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY-GNIPAWLGNLSSLNDIMMAINHLQGPIPL 277 (623)
Q Consensus 199 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 277 (623)
+. .+|..+..+.+|++|++++|.+.-.--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 76 45556666777777777777654322233445566666666665432 245555666666666666666665 5566
Q ss_pred cccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccC
Q 038273 278 EFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRL 357 (623)
Q Consensus 278 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 357 (623)
.+..+++|+.|++|+|.++.. .+ . .....+|++|+++.|+++ ..|+++..+++|
T Consensus 240 cly~l~~LrrLNLS~N~iteL-------------~~-----------~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL 293 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITEL-------------NM-----------T-EGEWENLETLNLSRNQLT-VLPDAVCKLTKL 293 (1255)
T ss_pred HHhhhhhhheeccCcCceeee-------------ec-----------c-HHHHhhhhhhccccchhc-cchHHHhhhHHH
Confidence 666666666666666655410 00 0 111234455555555554 444444444555
Q ss_pred cEEEcccccccc-cCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCc
Q 038273 358 RYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK 436 (623)
Q Consensus 358 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 436 (623)
+.|.+.+|++.- -+|..++.+.+|+.+..++|.
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~---------------------------------------------- 327 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK---------------------------------------------- 327 (1255)
T ss_pred HHHHhccCcccccCCccchhhhhhhHHHHhhccc----------------------------------------------
Confidence 555444444431 123333333333333333333
Q ss_pred ccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273 437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486 (623)
Q Consensus 437 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (623)
+. ..|+.+..+..|+.|.|++|.+. .+|+++.-++.|+.||+..|.-.
T Consensus 328 LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 328 LE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 22 55666666666666666666665 45666666666666666666544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-34 Score=295.44 Aligned_cols=467 Identities=26% Similarity=0.299 Sum_probs=295.5
Q ss_pred CcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEE
Q 038273 16 LKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLV 95 (623)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 95 (623)
+..|+++.|-+.....+ ..-.+.+|+.|++++|+++ .+|..+..+.+|+.|.++.|.+. ..|... .++.+|+++.
T Consensus 23 ~~~ln~~~N~~l~~pl~--~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~ln 97 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLE--FVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLN 97 (1081)
T ss_pred HHhhhccccccccCchH--HhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhhe
Confidence 55666666544322111 1122336777788777764 66777777777788888777777 667554 6777778777
Q ss_pred ccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccC-------------------cccccCCc
Q 038273 96 LRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRN-------------------DFNGSIPS 156 (623)
Q Consensus 96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n-------------------~i~~~~~~ 156 (623)
|.+|++.. .|..+..+.+|++|+++.|.+. .+|.-+.. +..++.+..++| .+.+.++.
T Consensus 98 L~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 98 LKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEV-LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred eccchhhc-CchhHHhhhcccccccchhccC-CCchhHHh-hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 77776643 5667777777777888777776 66655544 334444444444 44444444
Q ss_pred ccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCC
Q 038273 157 SIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP 236 (623)
Q Consensus 157 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 236 (623)
++..+++ .|++++|.+. .+. ...+.+|+.+....|.+..... .-++|+.|+.+.|.++...+. ..-.+
T Consensus 175 ~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~n 242 (1081)
T KOG0618|consen 175 DIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLN 242 (1081)
T ss_pred chhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--ccccc
Confidence 4444444 4555555553 222 1335555555555555442211 235666667777666633221 23356
Q ss_pred CcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCc
Q 038273 237 LEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN 316 (623)
Q Consensus 237 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 316 (623)
|++++++.|+++ ..|.++..+.+|+.+....|.+. ..|..+...++|+.|.+.+|.+....+......+|++|++..|
T Consensus 243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 777777777776 44577777778888887777775 5566666777777777777777755555556777777777777
Q ss_pred cccccCCCCCccCCCc-eeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCC
Q 038273 317 MLYGPLKYGTFFNRSS-IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI 395 (623)
Q Consensus 317 ~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 395 (623)
++ ...|...+.-... +..++.+.|++.......=...+.|+.|.+.+|.+++...+.+.+.+.|+.|++++|++....
T Consensus 321 ~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 NL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred cc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 77 3444443333322 566666666665322111223456788888888887766667778888888888888876444
Q ss_pred CCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCC
Q 038273 396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQV 475 (623)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 475 (623)
..++.. ++.|+.|++|+|+++ .+|..+..+..|++|...+|++. ..| .+..+++|
T Consensus 400 as~~~k----------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 400 ASKLRK----------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred HHHHhc----------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 444443 347788888888888 67788888888888888888887 555 67778888
Q ss_pred cEEECCCCccccc-CccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCC
Q 038273 476 ESLDVSYNNLNGK-IPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGN 531 (623)
Q Consensus 476 ~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~N 531 (623)
+.+|++.|+++.. +|.... -+.|++||+++|.-.....+.+..+..+...++.-|
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 8888888888743 333322 278888888888755555555555555555555544
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-34 Score=293.79 Aligned_cols=448 Identities=24% Similarity=0.318 Sum_probs=349.5
Q ss_pred cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCC
Q 038273 9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENN 88 (623)
Q Consensus 9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l 88 (623)
...+.-+|++|||++|.+....... ....+|+.|+++.|.|. ..|....++.+|+++.|.+|.+. ..|.++ ..+
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~i---t~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~l 113 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQI---TLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SEL 113 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchh---hhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhh
Confidence 3444556999999999876443332 33348999999999887 56788899999999999999988 889886 889
Q ss_pred CCCCEEEccCCcCcCcCCCCCCCCCC-------------------CCEEEccCCCCCCCCChhhhhcCCCccEEecccCc
Q 038273 89 TNLNTLVLRNNSLSGPFRMPIQPHWH-------------------LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRND 149 (623)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~~~~l~~-------------------L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 149 (623)
.+|+.|+++.|.+.. +|..+..++. .+.+++..|.+.+.++..+.. +.. .|+|++|.
T Consensus 114 knl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~ 189 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNE 189 (1081)
T ss_pred hcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh-hhe--eeecccch
Confidence 999999999998754 3443333332 555666666666666666554 222 59999998
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCc
Q 038273 150 FNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK 229 (623)
Q Consensus 150 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 229 (623)
+. -..+.++.+|+.+....|++. .+. ...++|+.|+.+.|.+....+ .....+|+.++++.|+++ .+|+
T Consensus 190 ~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~ 258 (1081)
T KOG0618|consen 190 ME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPE 258 (1081)
T ss_pred hh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchH
Confidence 76 235778899999999999987 443 257889999999999873322 223468999999999999 4669
Q ss_pred cCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC---CCC
Q 038273 230 SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS---SHS 306 (623)
Q Consensus 230 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~ 306 (623)
++..+.+|+.++..+|+++ ..|..+..+++|+.|.+..|.+. .+|....+++.|++|++..|++. ..|..+ ...
T Consensus 259 wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNA 335 (1081)
T ss_pred HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhH
Confidence 9999999999999999996 77888888999999999999998 45667788999999999999997 444433 234
Q ss_pred cccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEc
Q 038273 307 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL 386 (623)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 386 (623)
+++.++.+.|++. ..+...-...+.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++.......+.++..|+.|++
T Consensus 336 ~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred HHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 5777777777773 333322345678999999999999887778889999999999999999777778899999999999
Q ss_pred cCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCccccc-C
Q 038273 387 SNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGV-I 465 (623)
Q Consensus 387 ~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~ 465 (623)
++|+++ .+|.++..+. .|++|...+|.+. ..| .+..++.|+.+|++.|+++.. +
T Consensus 415 SGNkL~-~Lp~tva~~~----------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 415 SGNKLT-TLPDTVANLG----------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred ccchhh-hhhHHHHhhh----------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 999997 4556666544 8999999999998 667 789999999999999999754 3
Q ss_pred CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccC
Q 038273 466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHN 507 (623)
Q Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N 507 (623)
|.... -++|+.||+++|.=.......|..+.++...++.-|
T Consensus 470 ~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 470 PEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 33333 389999999999844455566666777777766666
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7.1e-33 Score=271.41 Aligned_cols=369 Identities=22% Similarity=0.267 Sum_probs=313.5
Q ss_pred cCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCC
Q 038273 11 FNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTN 90 (623)
Q Consensus 11 ~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~ 90 (623)
+=||-.|-.|+++|++++..-+... -...+++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchh
Confidence 3466788899999999865432210 11128999999999885 68999999999999999999987 555554 78999
Q ss_pred CCEEEccCCcCc-CcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEc
Q 038273 91 LNTLVLRNNSLS-GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDL 169 (623)
Q Consensus 91 L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 169 (623)
|+.+++..|++. +-+|..+..+..|..||||+|++. +.|..+-. -+++-+|+||+|+|..+....|.+++-|-+|||
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 999999999885 457888889999999999999999 89998876 569999999999999665566889999999999
Q ss_pred cCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc-cccCccCcCCCCCcEEECcCCcCc
Q 038273 170 SHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT-GEIPKSLSNCSPLEGLYMSDNNLY 248 (623)
Q Consensus 170 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~ 248 (623)
++|++. .+|+.+ ..+..|++|++++|.+.......+..+.+|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+.
T Consensus 158 S~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 158 SNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred ccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 999998 999988 67999999999999987766666667788899999987543 357888999999999999999998
Q ss_pred cccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccc-cCCCCCc
Q 038273 249 GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG-PLKYGTF 327 (623)
Q Consensus 249 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~ 327 (623)
..|+.+.++++|+.|++++|+++. .........+|++|++|+|+++........+++|+.|.+.+|+++- -+|.+ +
T Consensus 236 -~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-I 312 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-I 312 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc-h
Confidence 789999999999999999999984 3445566789999999999998544445589999999999998853 34555 8
Q ss_pred cCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCc
Q 038273 328 FNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF 392 (623)
Q Consensus 328 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 392 (623)
..+.+|+.+...+|.+. .+|..+..|+.|+.|.|+.|++. .+|+++.-++.|+.||+..|+-.
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 88899999999999988 89999999999999999999988 78999999999999999999754
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-27 Score=223.15 Aligned_cols=276 Identities=19% Similarity=0.148 Sum_probs=184.2
Q ss_pred CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC-CCCCCCCChhhhhcCCCccEE
Q 038273 65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK-NFFQGNIPLEIGVYFPRLVYL 143 (623)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~l~~L~~L 143 (623)
.-..++|..|.|+ .+|+..|+.+++|+.|+|++|.|+.+.|.+|.++++|.+|-+.+ |+|+ .+|...+..+..++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 5677889999998 89999999999999999999999999999999999888777666 8888 8999988888899999
Q ss_pred ecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc------------cccccccccCC
Q 038273 144 NLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH------------GQLFYKKIYLR 211 (623)
Q Consensus 144 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~ 211 (623)
.+.-|++.....++|..+++|..|.+.+|.+. .++...|..+.+++.+.+..|... ...+..++...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 99999998878888999999999999999998 888888888999999998887632 12233333333
Q ss_pred CCCEEecccccCccccCccCcCC-CCCcEEECcCCcCccccc-hhccCCCCCCEEECccccccccccccccCCCCCcEEe
Q 038273 212 KLARLHLDANYCTGEIPKSLSNC-SPLEGLYMSDNNLYGNIP-AWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289 (623)
Q Consensus 212 ~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 289 (623)
......+.+.++..+.+..|... ..+..-..+.+...+..| ..|+++++|++|++++|+++.+.+.+|.+...+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 33333444444443333322211 111111112222222222 3456666666666666666666666666666666666
Q ss_pred CcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccc
Q 038273 290 LSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNL 367 (623)
Q Consensus 290 l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 367 (623)
+..|++. .+....|.++.+|+.|+|.+|+|+...|.+|..+..|.+|++-.|++
T Consensus 305 L~~N~l~------------------------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRNKLE------------------------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcchHH------------------------HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 6666554 22223355555555555555555555555555555555555555544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=9.9e-24 Score=241.84 Aligned_cols=340 Identities=21% Similarity=0.227 Sum_probs=202.8
Q ss_pred CCCCCCCCCEEEccCCCC------CCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchH
Q 038273 108 PIQPHWHLDTLHVSKNFF------QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEH 181 (623)
Q Consensus 108 ~~~~l~~L~~L~l~~n~l------~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 181 (623)
+|.++++|+.|.+..+.. ...+|..+....++|+.|++.++.++ .+|..| ...+|+.|++.+|.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 345555555555543321 11334444333334566666555554 344444 3455666666665555 45444
Q ss_pred HhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCC
Q 038273 182 LVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSL 261 (623)
Q Consensus 182 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 261 (623)
+ ..+++|+.|+++++......| .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|
T Consensus 630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 3 345566666665544333333 24455566666666554444555556666666666666554333444333 45666
Q ss_pred CEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccc------cCCCCCccCCCceeE
Q 038273 262 NDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYG------PLKYGTFFNRSSIVT 335 (623)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~~~~~L~~ 335 (623)
+.|++++|......|. ..++|+.|++++|.+. .+|....+++|++|.+.++.... ..+...+..+++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 6666666544333332 1345666666666654 44444455666666665532110 011111334568888
Q ss_pred EeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCC
Q 038273 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSA 415 (623)
Q Consensus 336 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~ 415 (623)
|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|......|..
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------- 844 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------- 844 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence 9998887777788888888999999998886544666554 6888899999887654433321
Q ss_pred CccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCc
Q 038273 416 PTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484 (623)
Q Consensus 416 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 484 (623)
.++++.|++++|.++ .+|..+..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus 845 --------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 --------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred --------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 247888889888887 678888888889999988854333566677788888888888885
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=5.6e-23 Score=235.67 Aligned_cols=342 Identities=20% Similarity=0.234 Sum_probs=262.9
Q ss_pred CChhhhhcCCCccEEecccCc------ccccCCcccCCCC-CCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273 129 IPLEIGVYFPRLVYLNLSRND------FNGSIPSSIGDMN-SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201 (623)
Q Consensus 129 ~p~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 201 (623)
+....+..+++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 344555668899999886553 2334667777764 5999999999987 888765 4789999999999876
Q ss_pred ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273 202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ 281 (623)
Q Consensus 202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 281 (623)
..+..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 4566778899999999998765445664 7788999999999987767888889999999999999976555666554 7
Q ss_pred CCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCC-------CCCchhhhcc
Q 038273 282 LNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS-------GNIPYWIERL 354 (623)
Q Consensus 282 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~l 354 (623)
+++|+.|++++|.....+|.. ..+|+.|++++|.+ ..+|.. ..+++|++|++.++... ...+......
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc-cccccc--ccccccccccccccchhhccccccccchhhhhcc
Confidence 889999999998765555543 46889999999987 345543 25678888888764321 1122223345
Q ss_pred ccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccC
Q 038273 355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSC 434 (623)
Q Consensus 355 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 434 (623)
++|+.|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----------------------~L~sL~~L~Ls~ 834 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-----------------------NLESLESLDLSG 834 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------CccccCEEECCC
Confidence 789999999998777889999999999999999987555555432 245899999999
Q ss_pred CcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCc
Q 038273 435 NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNN 508 (623)
Q Consensus 435 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~ 508 (623)
|......|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 835 c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 835 CSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 8765555543 368999999999998 678889999999999999865544677788889999999999985
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=9.2e-27 Score=217.11 Aligned_cols=402 Identities=18% Similarity=0.165 Sum_probs=254.1
Q ss_pred CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccC-CcCCcccchHHhhCCCCCCEE
Q 038273 114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSH-NQLTGEIPEHLVIGCFNLEYL 192 (623)
Q Consensus 114 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L 192 (623)
.-..++|..|.|+ .+|...|..+++|+.|||++|+|+.+.|++|.++.+|..|-+.+ |+|+ .+|...|.++..|+.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 5567899999999 99999999999999999999999999999999999998887777 8998 9999999999999999
Q ss_pred EcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCcc------------ccchhccCCCC
Q 038273 193 VLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYG------------NIPAWLGNLSS 260 (623)
Q Consensus 193 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~~ 260 (623)
.+.-|.+.......|..+++|..|.+..|.+..+-..+|..+..++.+.+..|.... ..|-.++...-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 999999998888999999999999999999886666689999999999988886321 11222222222
Q ss_pred CCEEECccccccccccccccC-CCCCcEEeCcCccceeeCCCCC--CCCcccEEEccCccccccCCCCCccCCCceeEEe
Q 038273 261 LNDIMMAINHLQGPIPLEFCQ-LNYLEILDLSENNISGTLPSCS--SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLD 337 (623)
Q Consensus 261 L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 337 (623)
.....+.+.++..+.+..|.. +.++..--.+.+...+..|... .+++|+++++++|++++ +...+|.....+++|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhh
Confidence 233333333333333332221 1111111112222322333221 56777777888877743 4444577777777777
Q ss_pred CCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCc
Q 038273 338 LSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPT 417 (623)
Q Consensus 338 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 417 (623)
|..|++..+....|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++-..-.-.+-...++... ...
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~------~~~ 378 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS------VVG 378 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC------CCC
Confidence 77777776666677777778888888888777777777777777777777776532111000000000000 000
Q ss_pred cccCCCCCCccEEEccCCcccc---cCCcc---------ccccccCCe-eeCCCCcccccCCccCCCCCCCcEEECCCCc
Q 038273 418 RYKGKPLNKMYGVDLSCNKLTG---EIPPQ---------IGKLTSIRA-LNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484 (623)
Q Consensus 418 ~~~~~~~~~L~~L~L~~n~l~~---~~~~~---------l~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 484 (623)
.-.-+.+..++.+++++..+.+ ..|++ -..++.+.+ ...|+..+. .+|..+. ..-.+|++.+|.
T Consensus 379 ~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~ 455 (498)
T KOG4237|consen 379 NPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNA 455 (498)
T ss_pred CCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccch
Confidence 0111122344445554443321 11111 122233332 233333343 4443332 245677777777
Q ss_pred ccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCC
Q 038273 485 LNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGN 531 (623)
Q Consensus 485 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~N 531 (623)
+. .+|+. .+.+| .+|+++|+++...-..|.+++.+..+.++.|
T Consensus 456 ~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 456 IT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 77 45554 45566 7778888777666666666666666666544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=4.3e-20 Score=196.55 Aligned_cols=192 Identities=27% Similarity=0.312 Sum_probs=81.9
Q ss_pred CEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcC
Q 038273 165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD 244 (623)
Q Consensus 165 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 244 (623)
..|+++++.++ .+|..+. .+|+.|++.+|.++. +|. ..++|++|++++|+++. +|.. .++|+.|++++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 34444444444 4444331 244444554444442 111 12445555555554442 2221 23455555555
Q ss_pred CcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCC
Q 038273 245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324 (623)
Q Consensus 245 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 324 (623)
|.+.. +|.. .++|+.|++++|+++.. |. ..++|+.|++++|.+.+ +|. ....|+.|++++|.+.+ +|.
T Consensus 272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~--lp~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 272 NPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA--LPSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred Cchhh-hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCC--CcccccccccccCcccc-ccc
Confidence 55442 2221 13445555555555422 21 12445555555555542 222 12234444444444422 221
Q ss_pred CCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCc
Q 038273 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF 392 (623)
Q Consensus 325 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 392 (623)
. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.. +|.. .++|+.|++++|++.
T Consensus 340 l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 340 L----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred c----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence 1 1345555555555553 2221 1345555555555542 3321 134555555555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=8.9e-20 Score=194.12 Aligned_cols=264 Identities=28% Similarity=0.311 Sum_probs=136.4
Q ss_pred CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEe
Q 038273 65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144 (623)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ 144 (623)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++.. |. ..++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence 3455666666666 5665442 3566666666666542 22 1356666666666666 45531 34566666
Q ss_pred cccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc
Q 038273 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT 224 (623)
Q Consensus 145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 224 (623)
+++|.++ .+|..+ .+|+.|++++|+++ .+|. .+++|+.|++++|.+.+. |.. ..+|+.|++++|.++
T Consensus 269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 269 IFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred ccCCchh-hhhhch---hhcCEEECcCCccc-cccc----cccccceeECCCCccccC-CCC---cccccccccccCccc
Confidence 6666655 233322 34556666666665 4543 134566666666655532 211 123455555555554
Q ss_pred cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCC
Q 038273 225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSS 304 (623)
Q Consensus 225 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 304 (623)
+ +|.. ..+|+.|++++|+++. +|.. ..+|+.|++++|.+.. +|..
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-------------------------LP~l-- 380 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-------------------------LPAL-- 380 (788)
T ss_pred c-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-------------------------Cccc--
Confidence 2 2221 1345555555555542 2221 1234444455544442 2221
Q ss_pred CCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEE
Q 038273 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLI 384 (623)
Q Consensus 305 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 384 (623)
..+|+.|++++|.+.+ +|.. .++|+.|++++|+++. +|... .+|+.|++++|+++ .+|..+..+++|+.|
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred ccccceEEecCCcccC-CCCc----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 1234444555444432 2221 2456666666666663 34322 35666777777776 556666777777777
Q ss_pred EccCCcCcCCCCCcc
Q 038273 385 DLSNNNLFGQIPGCL 399 (623)
Q Consensus 385 ~l~~n~l~~~~~~~~ 399 (623)
++++|++++..+..+
T Consensus 451 dLs~N~Ls~~~~~~L 465 (788)
T PRK15387 451 NLEGNPLSERTLQAL 465 (788)
T ss_pred ECCCCCCCchHHHHH
Confidence 777777766655544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=3.9e-18 Score=182.98 Aligned_cols=244 Identities=22% Similarity=0.333 Sum_probs=111.1
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
+...|++++++++. +|..+. ++|+.|++++|.++ .+|..++ .+|++|++++|++++. |..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence 34445555544442 333221 24555555555554 4444331 3455555555554432 22221 24555555
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+ ..+|+.|++++|.+.
T Consensus 249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 249 SINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT 317 (754)
T ss_pred cCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc
Confidence 555554 4454433 24555555555554 2343332 34555555555554 444332 124555555555554
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 280 (623)
.. |..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.+.. +|..+.
T Consensus 318 ~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~ 387 (754)
T PRK15370 318 AL-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP 387 (754)
T ss_pred cC-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH
Confidence 32 2211 1345555555555543 333332 45555555555554 2333332 455555555555552 232222
Q ss_pred CCCCCcEEeCcCccceeeCCCCC-----CCCcccEEEccCccc
Q 038273 281 QLNYLEILDLSENNISGTLPSCS-----SHSTIQQVHLSKNML 318 (623)
Q Consensus 281 ~l~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~L~l~~n~l 318 (623)
..|+.|++++|++. .+|... ..+.+..+++.+|.+
T Consensus 388 --~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 388 --AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 24555556665554 222211 234555666666655
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=2.5e-18 Score=184.45 Aligned_cols=248 Identities=25% Similarity=0.358 Sum_probs=179.3
Q ss_pred CCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEE
Q 038273 64 HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYL 143 (623)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 143 (623)
.+...|+++++.++ .+|..+ .++|+.|++++|+++.. |..+. ++|++|++++|.++ .+|..+. ++|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 45678888888888 678654 35788999999888764 43332 58899999998888 7887654 378899
Q ss_pred ecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccC
Q 038273 144 NLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYC 223 (623)
Q Consensus 144 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 223 (623)
++++|.+. .+|..+. .+|+.|++++|+++ .+|..+ .++|+.|++++|.++. +|..+ .++|+.|++++|.+
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSL 316 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcc
Confidence 99999888 5666553 57889999998888 777755 3578899999888875 33333 24688888888888
Q ss_pred ccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC
Q 038273 224 TGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS 303 (623)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 303 (623)
+. +|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.+. .+|...
T Consensus 317 t~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l 386 (754)
T PRK15370 317 TA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENL 386 (754)
T ss_pred cc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhH
Confidence 74 44433 2678888998888874 555443 68889999998887 345444 358889999998887 344322
Q ss_pred CCCcccEEEccCccccccCCCC---CccCCCceeEEeCCCCcCC
Q 038273 304 SHSTIQQVHLSKNMLYGPLKYG---TFFNRSSIVTLDLSYNSFS 344 (623)
Q Consensus 304 ~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~ 344 (623)
...|+.|++++|++. .+|.. .....+.+..+++.+|+++
T Consensus 387 -~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 -PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 246888888888885 44432 1233477888899888887
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.4e-19 Score=178.24 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCCcEEECCCCccc----ccCccccccCCCCCeeecccCccccc----CCCCcccc-CCCCCccccCCCC
Q 038273 473 KQVESLDVSYNNLN----GKIPPQLVELNVLAVFSVAHNNLSGK----IPEWTAQF-TTFKEDSYEGNPL 533 (623)
Q Consensus 473 ~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~~-~~l~~l~l~~Np~ 533 (623)
+.|++|++++|.++ ..+...+..+++|+++++++|.++.. ....+... +.++++++.+|||
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 45666666666554 11223344445666666666666532 22223333 4566677777665
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=3.8e-18 Score=170.69 Aligned_cols=277 Identities=22% Similarity=0.233 Sum_probs=138.0
Q ss_pred EEEccCCcCc-CcCCCCCCCCCCCCEEEccCCCCCCC----CChhhhhcCCCccEEecccCcccc------cCCcccCCC
Q 038273 93 TLVLRNNSLS-GPFRMPIQPHWHLDTLHVSKNFFQGN----IPLEIGVYFPRLVYLNLSRNDFNG------SIPSSIGDM 161 (623)
Q Consensus 93 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~l 161 (623)
.|+|..+.++ ......+..+.+|++|+++++.+++. ++..+. ..+++++++++++.+.. ..+..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3556666655 22233345556677777777776422 222222 24557777777766541 223345556
Q ss_pred CCCCEEEccCCcCCcccchHHhhCCCC---CCEEEcccCcCcc----ccccccccC-CCCCEEecccccCccc----cCc
Q 038273 162 NSLKFLDLSHNQLTGEIPEHLVIGCFN---LEYLVLSENSLHG----QLFYKKIYL-RKLARLHLDANYCTGE----IPK 229 (623)
Q Consensus 162 ~~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~~-~~L~~L~l~~n~~~~~----~~~ 229 (623)
++|+.|++++|.+.+..+. .+..+.+ |++|++++|.+.. .....+..+ ++|+.|++++|.+++. ...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 6777777777666532222 2222333 6666666666542 111223334 5556666666655521 122
Q ss_pred cCcCCCCCcEEECcCCcCccc----cchhccCCCCCCEEECccccccccc----cccccCCCCCcEEeCcCccceeeCCC
Q 038273 230 SLSNCSPLEGLYMSDNNLYGN----IPAWLGNLSSLNDIMMAINHLQGPI----PLEFCQLNYLEILDLSENNISGTLPS 301 (623)
Q Consensus 230 ~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~ 301 (623)
.+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.. ...+..+++|+.|++++|.+......
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 334445555555555555421 1222333445555555555543221 12233444455555555443310000
Q ss_pred CCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC----CchhhhccccCcEEEccccccccc----Cch
Q 038273 302 CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN----IPYWIERLTRLRYLILANNNLEGE----VPN 373 (623)
Q Consensus 302 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 373 (623)
.+........+.|+.|++++|.+++. ....+..+++|+.+++++|.+... ...
T Consensus 240 -------------------~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 240 -------------------ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred -------------------HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 00000011235677777777777532 223445556778888888877643 233
Q ss_pred hhcCC-CCCCEEEccCCc
Q 038273 374 QLCRL-KQLRLIDLSNNN 390 (623)
Q Consensus 374 ~~~~l-~~L~~L~l~~n~ 390 (623)
.+... +.|+.+++.+|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 34444 677777777765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.5e-18 Score=142.55 Aligned_cols=181 Identities=28% Similarity=0.449 Sum_probs=135.0
Q ss_pred ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 406 (623)
Q Consensus 327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 406 (623)
+..+..++.|.+++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|.+. ..|..|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs----- 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS----- 100 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence 334456666777777777 45556777777777777777777 56667777777777777766664 44444433
Q ss_pred CCCCCCCCCCccccCCCCCCccEEEccCCcccc-cCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcc
Q 038273 407 NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485 (623)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 485 (623)
+|.|+.||+.+|++.. ..|..|..++.|+.|.+++|.+. .+|...+.+++|+.|.+.+|.+
T Consensus 101 -----------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 101 -----------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred -----------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 4577777777777753 57888999999999999999998 8888899999999999999999
Q ss_pred cccCccccccCCCCCeeecccCcccccCCCCccccCC---CCCccccCCCCCC
Q 038273 486 NGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTT---FKEDSYEGNPLLC 535 (623)
Q Consensus 486 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---l~~l~l~~Np~~C 535 (623)
. .+|..++.++.|+.|.+.+|+++...|+ ++++.- -....+..|||.-
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 8 7889999999999999999999976664 333321 2334556666653
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.9e-17 Score=135.53 Aligned_cols=157 Identities=22% Similarity=0.328 Sum_probs=136.5
Q ss_pred CCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCC
Q 038273 37 TPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLD 116 (623)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 116 (623)
+...+++.|.++.|+++ .+|..+.++.+|+.|++++|++. .+|..+ +.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhh
Confidence 44448899999999997 56777999999999999999998 889887 89999999999999874 4788999999999
Q ss_pred EEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273 117 TLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS 195 (623)
Q Consensus 117 ~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 195 (623)
.||++.|.+.. .+|-.++. +..|+.|.+++|.+. .+|..++++++|+.|.++.|.+. ++|..+ +.+..|++|++.
T Consensus 106 vldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiq 181 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQ 181 (264)
T ss_pred hhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhcc
Confidence 99999998874 56777766 678999999999998 78899999999999999999998 899888 578899999999
Q ss_pred cCcCcc
Q 038273 196 ENSLHG 201 (623)
Q Consensus 196 ~n~l~~ 201 (623)
+|+++.
T Consensus 182 gnrl~v 187 (264)
T KOG0617|consen 182 GNRLTV 187 (264)
T ss_pred cceeee
Confidence 988863
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=8.2e-14 Score=149.47 Aligned_cols=118 Identities=34% Similarity=0.572 Sum_probs=107.5
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 505 (623)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCcccc-CCCCCccccCCCCCCCCCC-CCCC
Q 038273 506 HNNLSGKIPEWTAQF-TTFKEDSYEGNPLLCGKPL-PDCD 543 (623)
Q Consensus 506 ~N~l~~~~~~~~~~~-~~l~~l~l~~Np~~C~~~l-~~C~ 543 (623)
+|++++.+|..+... ..+..+++.+|+.+|+.+. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999877553 4567889999999998653 3464
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.15 E-value=1.6e-10 Score=124.39 Aligned_cols=113 Identities=31% Similarity=0.507 Sum_probs=100.7
Q ss_pred CCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCC
Q 038273 380 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN 459 (623)
Q Consensus 380 ~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 459 (623)
.++.|++++|.+.+.+|..+..+ ++|+.|+|++|.+.+.+|..+..+++|+.|+|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L----------------------~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL----------------------RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC----------------------CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC
Confidence 37889999999999888877654 49999999999999999999999999999999999
Q ss_pred cccccCCccCCCCCCCcEEECCCCcccccCccccccC-CCCCeeecccCcccccCC
Q 038273 460 NLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVEL-NVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 460 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~~ 514 (623)
.+++.+|+.+.++++|+.|+|++|++++.+|..+... ..+..+++.+|...+..|
T Consensus 477 ~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999999999999999999999988764 467889999998655444
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.2e-11 Score=118.47 Aligned_cols=212 Identities=21% Similarity=0.140 Sum_probs=128.1
Q ss_pred cccEEEccCCCCCCCCC--cccCCCCCCcEEEccCCCCCCc-CChHHhhCCCCCCEEEccCCcCcCcCCC-CCCCCCCCC
Q 038273 41 QLESVKLSGSGIHATFP--KFLYNQHDLEYVDFSDSNLKGE-FPNWLLENNTNLNTLVLRNNSLSGPFRM-PIQPHWHLD 116 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~ 116 (623)
+|+++.|+++.+. ..+ .....|++++.||+|+|-+..- .-..+...+|+|+.|+++.|++...... .-..+++|+
T Consensus 122 kL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 7888889888765 323 4667889999999998876521 1224457889999999999987532211 122467888
Q ss_pred EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccch-HHhhCCCCCCEEEcc
Q 038273 117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE-HLVIGCFNLEYLVLS 195 (623)
Q Consensus 117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~ 195 (623)
.|.++.|.++-.--..+...+|+|+.|+|.+|............++.|+.|||++|.+. ..+. .....++.|+.|+++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhcc
Confidence 88888888874333444555788888888888533344444556777888888888776 4442 122456677777777
Q ss_pred cCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc-cchhccCCCCCCEEECcccccc
Q 038273 196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN-IPAWLGNLSSLNDIMMAINHLQ 272 (623)
Q Consensus 196 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~ 272 (623)
.+++......... .-+-...+++|++|++..|++.+. .-..+..+++|+.|.+..|.+.
T Consensus 280 ~tgi~si~~~d~~------------------s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVE------------------SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCcc------------------chhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666542211110 000123345566666666655321 1123344455555555555554
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9.4e-12 Score=119.18 Aligned_cols=186 Identities=22% Similarity=0.173 Sum_probs=118.3
Q ss_pred hCCCCCCEEEccCCcCcCcCC-CCCCCCCCCCEEEccCCCCCCC-CChhhhhcCCCccEEecccCcccccCCcc-cCCCC
Q 038273 86 ENNTNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLHVSKNFFQGN-IPLEIGVYFPRLVYLNLSRNDFNGSIPSS-IGDMN 162 (623)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~ 162 (623)
+++.+|+...|.++.+..... .....+++++.|||++|-+..- .-..+...+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 466788888888887643211 3566788888888888876521 12245566888999999888876322221 23577
Q ss_pred CCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCcccc-CccCcCCCCCcEEE
Q 038273 163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEI-PKSLSNCSPLEGLY 241 (623)
Q Consensus 163 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~ 241 (623)
+|+.|.++.|.++..--..+...+|+|+.|++.+|............+..|++|+|++|++.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888888874333344457888888888888643344444555677888888888766322 13356777788887
Q ss_pred CcCCcCcccc-chh-----ccCCCCCCEEECccccc
Q 038273 242 MSDNNLYGNI-PAW-----LGNLSSLNDIMMAINHL 271 (623)
Q Consensus 242 L~~n~l~~~~-~~~-----l~~l~~L~~L~l~~n~~ 271 (623)
++.+.+...- |+. ...+++|+.|++..|++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 7777765431 111 13345555555555555
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.9e-12 Score=127.72 Aligned_cols=174 Identities=30% Similarity=0.452 Sum_probs=121.3
Q ss_pred CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEE
Q 038273 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLID 385 (623)
Q Consensus 306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 385 (623)
.--...+++.|++ ..+|.. +..+..|+.+.+..|.+. .+|..+..+..|+.++|+.|++. ..|..++.+| |+.|-
T Consensus 75 tdt~~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRF-SELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhcccccc-ccCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 3344556666666 445544 555566777777777776 56667777777777777777776 5666666666 67777
Q ss_pred ccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccC
Q 038273 386 LSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVI 465 (623)
Q Consensus 386 l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 465 (623)
+++|+++ .+|..++. .+.|..||.+.|.+. .+|..+..+.+|+.|++..|++. ..
T Consensus 150 ~sNNkl~-~lp~~ig~----------------------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l 204 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGL----------------------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL 204 (722)
T ss_pred EecCccc-cCCccccc----------------------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence 7777765 33433332 347777888888887 66777888888888888888887 34
Q ss_pred CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccc
Q 038273 466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511 (623)
Q Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 511 (623)
|..+..++ |..||+|+|+++ .+|..|.++..|++|-|.+|++..
T Consensus 205 p~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 205 PEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred CHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 55555555 778888888888 778888888888888888888864
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.1e-11 Score=112.71 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=51.9
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccC-ccccccCCCCCeeec
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKI-PPQLVELNVLAVFSV 504 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l 504 (623)
+|+.||+|+|.++ .+..+=..+.+.+.|.|++|.+.+. ..+..+-+|..||+++|+|.... -..++++|-|+.+.+
T Consensus 330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 4555555555554 2223334455677777777776533 45566667777777777776332 235667777777778
Q ss_pred ccCcccccCC
Q 038273 505 AHNNLSGKIP 514 (623)
Q Consensus 505 ~~N~l~~~~~ 514 (623)
.+|++.+...
T Consensus 407 ~~NPl~~~vd 416 (490)
T KOG1259|consen 407 TGNPLAGSVD 416 (490)
T ss_pred cCCCccccch
Confidence 8887775433
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=9.9e-11 Score=102.59 Aligned_cols=129 Identities=21% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc
Q 038273 61 YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL 140 (623)
Q Consensus 61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 140 (623)
.+..++++|+|++|.|+ .+. .+-..+.+|+.|++++|.|+.. +.+..+++|++|++++|+++ .+...+...+|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 34456777777777776 443 2212466777777777777653 34666778888888888887 5655554447788
Q ss_pred cEEecccCcccccC-CcccCCCCCCCEEEccCCcCCcccc---hHHhhCCCCCCEEEcc
Q 038273 141 VYLNLSRNDFNGSI-PSSIGDMNSLKFLDLSHNQLTGEIP---EHLVIGCFNLEYLVLS 195 (623)
Q Consensus 141 ~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~ 195 (623)
++|++++|+|.... -..++.+++|++|++.+|+++ .-+ ..++..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence 88888888876422 234667888888888888877 333 2344567777777654
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=7.5e-12 Score=116.61 Aligned_cols=243 Identities=23% Similarity=0.205 Sum_probs=139.7
Q ss_pred cccEEEccCCCCCCC----CCcccCCCCCCcEEEccCCC---CCCcCChHH------hhCCCCCCEEEccCCcCcCcCCC
Q 038273 41 QLESVKLSGSGIHAT----FPKFLYNQHDLEYVDFSDSN---LKGEFPNWL------LENNTNLNTLVLRNNSLSGPFRM 107 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~------~~~l~~L~~L~L~~n~i~~~~~~ 107 (623)
.++++++++|.+... +...+.+.++|+..++|+-. ....+|+.+ +..+++|++|+||.|-+....+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 677888888877543 33445666778888877532 122344322 23445666666666655322221
Q ss_pred C----CCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccc----
Q 038273 108 P----IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIP---- 179 (623)
Q Consensus 108 ~----~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 179 (623)
. +.++..|++|.+.+|.+.-..-..++. -|..|. .....+.-+.|+++...+|++. .-+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~ 177 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLE-NGGATAL 177 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccc-cccHHHH
Confidence 1 233455555555555443100001111 111111 0112333456777777777665 332
Q ss_pred hHHhhCCCCCCEEEcccCcCcc----ccccccccCCCCCEEecccccCcc----ccCccCcCCCCCcEEECcCCcCcccc
Q 038273 180 EHLVIGCFNLEYLVLSENSLHG----QLFYKKIYLRKLARLHLDANYCTG----EIPKSLSNCSPLEGLYMSDNNLYGNI 251 (623)
Q Consensus 180 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~ 251 (623)
...|...+.|+.+.+..|.|.. .....+..+++|+.||+..|-++. .+.+.++.+++|+.|++++|.+....
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 2344556777777777776653 233556677888888888876653 23456777888888888888876544
Q ss_pred chhc-----cCCCCCCEEECcccccccc----ccccccCCCCCcEEeCcCccce
Q 038273 252 PAWL-----GNLSSLNDIMMAINHLQGP----IPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 252 ~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
...+ ...++|+.+.+.+|.++.. +.......+.|..|++++|++.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4333 2367888888888887632 2223445788999999999883
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.3e-10 Score=119.62 Aligned_cols=155 Identities=31% Similarity=0.474 Sum_probs=87.6
Q ss_pred ceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCC
Q 038273 332 SIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDND 411 (623)
Q Consensus 332 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~ 411 (623)
+|+.|++++|++. .+|..+..+++|+.|++++|++. .++......+.|+.|++++|++....+. ..
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~----------- 206 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPE-IE----------- 206 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchh-hh-----------
Confidence 4555555555555 33344555566666666666665 3333333555666666666665422221 10
Q ss_pred CCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcc
Q 038273 412 GSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPP 491 (623)
Q Consensus 412 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 491 (623)
.+..|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..+++++.|++++|+++...+
T Consensus 207 -----------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 207 -----------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred -----------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc-
Confidence 1124666666666433 44555666666676777777665 235566666667777777777764322
Q ss_pred ccccCCCCCeeecccCcccccCCC
Q 038273 492 QLVELNVLAVFSVAHNNLSGKIPE 515 (623)
Q Consensus 492 ~~~~l~~L~~L~l~~N~l~~~~~~ 515 (623)
+..+.+++.|++++|.++...|.
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -ccccCccCEEeccCccccccchh
Confidence 56667777777777766655443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=9e-11 Score=102.85 Aligned_cols=108 Identities=30% Similarity=0.326 Sum_probs=30.5
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE
Q 038273 112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY 191 (623)
Q Consensus 112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 191 (623)
..++++|+|++|.++ .+ +.+...+.+|+.|++++|.++.. ..+..+++|+.|++++|.++ .+.+.+...+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 334566666666555 33 23333345677777777776632 23666777777777777776 665544345677777
Q ss_pred EEcccCcCcccc-ccccccCCCCCEEecccccCc
Q 038273 192 LVLSENSLHGQL-FYKKIYLRKLARLHLDANYCT 224 (623)
Q Consensus 192 L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~ 224 (623)
|++++|.+.... ...+..+++|+.|++.+|.+.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777765421 123334444444444444443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=2.4e-10 Score=117.58 Aligned_cols=200 Identities=26% Similarity=0.325 Sum_probs=133.6
Q ss_pred EEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCC-CCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC
Q 038273 44 SVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNT-NLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK 122 (623)
Q Consensus 44 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 122 (623)
.+++..+.+... ...+...+.++.|++.+|.++ .++... .... +|+.|++++|++.. ++..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 466666665322 233445577788888887777 666554 3443 78888888887754 335567778888888888
Q ss_pred CCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccc
Q 038273 123 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQ 202 (623)
Q Consensus 123 n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 202 (623)
|.+. .+|..... .+.|+.|++++|+++ .+|.......+|+++.+++|++. ..+..+ ..+.++..+.+.+|.+...
T Consensus 173 N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~-~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 173 NDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL-SNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred chhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhh-hhcccccccccCCceeeec
Confidence 8877 66665533 467888888888877 45555556666888888887544 444444 4577777777777766532
Q ss_pred cccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhc
Q 038273 203 LFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL 255 (623)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 255 (623)
+..+..+++++.|++++|.++...+ ++.+.+++.|+++++.+....+...
T Consensus 248 -~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 -PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred -cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 4556667778888888888774433 7777888888888887765554433
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=6.6e-12 Score=123.99 Aligned_cols=172 Identities=30% Similarity=0.442 Sum_probs=138.8
Q ss_pred CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEE
Q 038273 114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLV 193 (623)
Q Consensus 114 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 193 (623)
--...|++.|++. ++|..+.. +-.|+.+.|..|.+. .+|.++.++..|.+++++.|+++ .+|..++ .--|+.|.
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLI 149 (722)
T ss_pred chhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEE
Confidence 3446788888888 88888776 558888888888888 68888889999999999999988 8888885 34588888
Q ss_pred cccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccc
Q 038273 194 LSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG 273 (623)
Q Consensus 194 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 273 (623)
+++|+++ .+|..+...++|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+.. -.|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 8888886 56677777888888999988887 56677888888888888888887 45555664 45788899988888
Q ss_pred cccccccCCCCCcEEeCcCccce
Q 038273 274 PIPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 274 ~~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
.+|..|..++.|++|.|.+|.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 67888888889999999888876
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=3.6e-11 Score=112.13 Aligned_cols=134 Identities=20% Similarity=0.248 Sum_probs=102.7
Q ss_pred CCCCCCEEEcccCcCcccc----ccccccCCCCCEEecccccCccc----cCccCcCCCCCcEEECcCCcCccc----cc
Q 038273 185 GCFNLEYLVLSENSLHGQL----FYKKIYLRKLARLHLDANYCTGE----IPKSLSNCSPLEGLYMSDNNLYGN----IP 252 (623)
Q Consensus 185 ~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~ 252 (623)
.-+.|+++..++|++.... ...++..+.|+.+.++.|.+... ....+..+++|++|||.+|-++.. ..
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 4678999999999986533 34566788999999999987532 235678999999999999987643 34
Q ss_pred hhccCCCCCCEEECccccccccccccc-----cCCCCCcEEeCcCccceeeCC-----CCCCCCcccEEEccCccc
Q 038273 253 AWLGNLSSLNDIMMAINHLQGPIPLEF-----CQLNYLEILDLSENNISGTLP-----SCSSHSTIQQVHLSKNML 318 (623)
Q Consensus 253 ~~l~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l 318 (623)
..+..+++|+.|++++|.+......++ ...++|+++.+.+|.++..-. .....+.|..|++++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 556778999999999999875544333 347899999999998863211 111478899999999998
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.6e-11 Score=109.51 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=81.5
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 505 (623)
.++.|++|+|.+. .+ +.++.+++|+.||||+|.++ ....+-..+.+.++|.|+.|.+... ..++.+-+|..||++
T Consensus 308 kir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 308 KLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLS 382 (490)
T ss_pred ceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecccc
Confidence 4444444444444 22 34788999999999999998 4555666788999999999998743 567889999999999
Q ss_pred cCcccccCC-CCccccCCCCCccccCCCCCC
Q 038273 506 HNNLSGKIP-EWTAQFTTFKEDSYEGNPLLC 535 (623)
Q Consensus 506 ~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~C 535 (623)
+|++..... ..++.+|.|+.+.+.+||..-
T Consensus 383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999876433 457789999999999999865
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=4e-10 Score=123.77 Aligned_cols=128 Identities=23% Similarity=0.288 Sum_probs=96.8
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCC--CCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEE
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSN--LKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 118 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 118 (623)
..++..+.++.+. .++.. ..++.|++|-+.+|. +. .++..+|..++.|++|||++|.--+.+|..++.+-+||+|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 5777777777764 22332 244578888888875 44 6777778888888888888876666788888888888888
Q ss_pred EccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCc
Q 038273 119 HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ 173 (623)
Q Consensus 119 ~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 173 (623)
+++++.+. .+|..+.+ +..|.+|++..+.....+|.....+++|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888888 88888887 6688888888877655566666778888888887654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=5.7e-10 Score=80.26 Aligned_cols=60 Identities=40% Similarity=0.598 Sum_probs=34.5
Q ss_pred cCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcc
Q 038273 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509 (623)
Q Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l 509 (623)
+|++|++++|.++.+.++.|.++++|++|++++|++....|+.|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555555555555556666666666665555555555556666666655543
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=7e-10 Score=121.85 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=66.4
Q ss_pred CCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCc--CcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc
Q 038273 64 HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS--LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV 141 (623)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 141 (623)
...+...+-+|.+. .++.. ..+++|++|-+..|. +.......|..++.|++||+++|.--+++|..++. +-+|+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR 598 (889)
T ss_pred hheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence 44555555555544 33332 234456666665554 33333334555666666666655443456666655 33666
Q ss_pred EEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccC
Q 038273 142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSEN 197 (623)
Q Consensus 142 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 197 (623)
+|+++++.+. .+|..+.++..|.+|++..+.-...+ ..+...+.+|++|.+...
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 6666666655 45555666666666666555443222 333334555666555443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=9.7e-10 Score=79.05 Aligned_cols=61 Identities=43% Similarity=0.599 Sum_probs=57.6
Q ss_pred CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcc
Q 038273 425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNL 485 (623)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 485 (623)
|+|++|++++|+++...+..|..+++|++|++++|.++.+.++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4799999999999988778999999999999999999999999999999999999999985
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=5.7e-10 Score=114.87 Aligned_cols=247 Identities=23% Similarity=0.252 Sum_probs=149.1
Q ss_pred cCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEE
Q 038273 232 SNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQV 311 (623)
Q Consensus 232 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 311 (623)
..+..++.+.+..|.+.. ....+..+++|+.+++.+|.+..+.. .+..+++|++|++++|.|+ .+.....++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccc-cccchhhccchhhh
Confidence 355667777777777763 23346677888888888888874432 2566788888888888887 55555556667777
Q ss_pred EccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc-hhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCc
Q 038273 312 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNN 390 (623)
Q Consensus 312 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 390 (623)
++.+|.+...-. +..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.
T Consensus 146 ~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISDISG---LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcchhccC---CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 777777743221 4446777777777777775443 2 45666777777777776522 223333344444666666
Q ss_pred CcCCCCCccccccccCCCCCCCCCCCccccCCCCC--CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCcc
Q 038273 391 LFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLN--KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVS 468 (623)
Q Consensus 391 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 468 (623)
+...-+-. ... .|+.+++++|.+. ..+..+..+..+..|++.+|.+... ..
T Consensus 220 i~~~~~l~------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 220 ISKLEGLN------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred ceeccCcc------------------------cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cc
Confidence 54221100 011 2667777777776 3334556667777777777776643 33
Q ss_pred CCCCCCCcEEECCCCccccc---Cccc-cccCCCCCeeecccCcccccCC
Q 038273 469 FSNLKQVESLDVSYNNLNGK---IPPQ-LVELNVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 469 ~~~l~~L~~L~Ls~n~l~~~---~p~~-~~~l~~L~~L~l~~N~l~~~~~ 514 (623)
+...+.+..+....|++... .... ....+.++..++..|+.....+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 45566666677777766521 1111 3445666677777776665444
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=8.3e-10 Score=113.66 Aligned_cols=247 Identities=24% Similarity=0.226 Sum_probs=155.0
Q ss_pred cCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEE
Q 038273 209 YLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEIL 288 (623)
Q Consensus 209 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 288 (623)
.+..++.+++..|.+.. .-..+..+++|+.|++.+|.+.... ..+..+++|++|++++|.+..+. .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhh
Confidence 45566666777777664 2233667788888888888876432 22667788888888888887543 34566668888
Q ss_pred eCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEccccccc
Q 038273 289 DLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLE 368 (623)
Q Consensus 289 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 368 (623)
++++|.+. .+.....+..|+.+++++|.+...-... ...+.+++.+++.+|.+... .++..+..+..+++..|.+.
T Consensus 146 ~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcch-hccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 88888876 5555555778888888888774332211 24567778888888877633 33444455566677777776
Q ss_pred ccCchhhcCCCC--CCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccc
Q 038273 369 GEVPNQLCRLKQ--LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG 446 (623)
Q Consensus 369 ~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 446 (623)
...+ +..+.. |+.+++++|++.... .. ...+..+..+++.+|.+... ..+.
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~----------------------~~~~~~l~~l~~~~n~~~~~--~~~~ 274 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRISRSP-EG----------------------LENLKNLPVLDLSSNRISNL--EGLE 274 (414)
T ss_pred eccC--cccchhHHHHHHhcccCcccccc-cc----------------------ccccccccccchhhcccccc--cccc
Confidence 3321 222232 778888888775321 00 11244677778887777633 2345
Q ss_pred ccccCCeeeCCCCccccc---CCc-cCCCCCCCcEEECCCCcccccCc
Q 038273 447 KLTSIRALNFSHNNLTGV---IPV-SFSNLKQVESLDVSYNNLNGKIP 490 (623)
Q Consensus 447 ~l~~L~~L~L~~n~l~~~---~~~-~~~~l~~L~~L~Ls~n~l~~~~p 490 (623)
..+.+..+....|.+... ... .....+.++...+..|.+....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 556666777777765421 111 14556778888888887775444
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.1e-10 Score=103.48 Aligned_cols=224 Identities=21% Similarity=0.163 Sum_probs=133.8
Q ss_pred cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCC-CCcccCCC-CCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273 17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHAT-FPKFLYNQ-HDLEYVDFSDSNLKGEFPNWLLENNTNLNTL 94 (623)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (623)
+.+|+.+-++.-+... .+....+..+.+........ +.+.+.-+ +.|++||||...++..--..+++.|.+|+.|
T Consensus 139 ~~lDl~~r~i~p~~l~---~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l 215 (419)
T KOG2120|consen 139 QTLDLTGRNIHPDVLG---RLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL 215 (419)
T ss_pred eeeccCCCccChhHHH---HHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence 4567766655422111 12222455555543322211 22222222 3599999998888754445667888999999
Q ss_pred EccCCcCcCcCCCCCCCCCCCCEEEccCCC-CCCCCChhhhhcCCCccEEecccCcccccCCcc-cCC-CCCCCEEEccC
Q 038273 95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNF-FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS-IGD-MNSLKFLDLSH 171 (623)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~-l~~L~~L~l~~ 171 (623)
.+.++++.+.+...+++-.+|+.|+++.+. ++......++..+++|..|+++.|......-.. ++. -+.|+.|++++
T Consensus 216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG 295 (419)
T ss_pred cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence 999999887777778888999999998865 443334456666888999999998765332221 111 25677788877
Q ss_pred CcCC--cccchHHhhCCCCCCEEEcccCc-CccccccccccCCCCCEEecccccCccccCcc---CcCCCCCcEEECcCC
Q 038273 172 NQLT--GEIPEHLVIGCFNLEYLVLSENS-LHGQLFYKKIYLRKLARLHLDANYCTGEIPKS---LSNCSPLEGLYMSDN 245 (623)
Q Consensus 172 n~l~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n 245 (623)
+.-. ..--+.+...+++|.+||++.|. ++......+.+++.|++|.++.|.. ++|.. +...|.|.+|++.++
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 6421 01112233567888888887654 4444444555666777777766643 23322 344555666665544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=2.8e-10 Score=115.75 Aligned_cols=179 Identities=23% Similarity=0.200 Sum_probs=120.7
Q ss_pred cccCCCCCcEEECcCCccccccccccCCCCCC-cccEEEccCCCCC---CCCCcccCC------CCCCcEEEccCCCCCC
Q 038273 9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKF-QLESVKLSGSGIH---ATFPKFLYN------QHDLEYVDFSDSNLKG 78 (623)
Q Consensus 9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~---~~~~~~~~~------~~~L~~L~ls~n~l~~ 78 (623)
++..+.+||+|.+.++++.... +..+.. .|++|..++. .. ..+....+. .-.|.+.++++|.+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~----GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAK----GLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred eeccccceeeEEecCcchhhhh----hhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 3566677777777777765321 112221 4555433221 11 011112221 235788888888887
Q ss_pred cCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCccc
Q 038273 79 EFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI 158 (623)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 158 (623)
.+..++ .-++.|+.|+|++|+++... .+..+++|++|||+.|.+. .+|..-...+ .|+.|++++|.++. -..+
T Consensus 178 ~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t--L~gi 250 (1096)
T KOG1859|consen 178 LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT--LRGI 250 (1096)
T ss_pred hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh--hhhH
Confidence 555554 77889999999999998753 6788999999999999988 7776544445 59999999998873 2458
Q ss_pred CCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 159 GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 159 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
.++.+|+.||+++|-+.+.-.-.....+..|+.|.|.+|.+-
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 889999999999998874433333445778899999998764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=5e-09 Score=106.88 Aligned_cols=109 Identities=27% Similarity=0.302 Sum_probs=86.3
Q ss_pred CCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeee
Q 038273 424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFS 503 (623)
Q Consensus 424 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 503 (623)
++.++.|+|++|+++... .+..++.|++|||++|.+..+..-...++. |+.|.+++|.++.. ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence 578899999999998543 788899999999999999855444455555 99999999998844 4567899999999
Q ss_pred cccCcccccCC-CCccccCCCCCccccCCCCCCCC
Q 038273 504 VAHNNLSGKIP-EWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 504 l~~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+++|-+.+... ..+..+..|+.|.+.|||.-|.+
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99998775322 22335677889999999999964
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.2e-09 Score=96.21 Aligned_cols=87 Identities=24% Similarity=0.222 Sum_probs=41.8
Q ss_pred CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCc-CCcccchHHhhCCCCCCEE
Q 038273 114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ-LTGEIPEHLVIGCFNLEYL 192 (623)
Q Consensus 114 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 192 (623)
.|+++||++..++..-...+...|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++..--..++.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555555544422222333334555555555555554444455555555555555542 2212222334455555555
Q ss_pred EcccCcCc
Q 038273 193 VLSENSLH 200 (623)
Q Consensus 193 ~l~~n~l~ 200 (623)
++++|.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555443
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.34 E-value=9.4e-08 Score=86.41 Aligned_cols=243 Identities=24% Similarity=0.242 Sum_probs=121.7
Q ss_pred cccEEEccCCCCCCC----CCcccCCCCCCcEEEccCCCC---CCcCChH------HhhCCCCCCEEEccCCcCcCcCCC
Q 038273 41 QLESVKLSGSGIHAT----FPKFLYNQHDLEYVDFSDSNL---KGEFPNW------LLENNTNLNTLVLRNNSLSGPFRM 107 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~l---~~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~ 107 (623)
.+++++||+|.|... +...+.+-.+|+..++|.-.. .+.+++. .+-+||+|+..+|+.|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 567777777776544 223344456677777764321 1122221 123566677777766666544333
Q ss_pred C----CCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHH-
Q 038273 108 P----IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHL- 182 (623)
Q Consensus 108 ~----~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 182 (623)
. +.+.+.|++|.+++|.+.-..-..++. .|.+| ..| .-.+.-|.|++....+|++. ..+...
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk---al~~l--a~n-------KKaa~kp~Le~vicgrNRle-ngs~~~~ 177 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK---ALFHL--AYN-------KKAADKPKLEVVICGRNRLE-NGSKELS 177 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHH---HHHHH--HHH-------hhhccCCCceEEEeccchhc-cCcHHHH
Confidence 2 334556666666666543100011111 01100 000 11233456666666666655 333322
Q ss_pred ---hhCCCCCCEEEcccCcCccc-----cccccccCCCCCEEecccccCcc----ccCccCcCCCCCcEEECcCCcCccc
Q 038273 183 ---VIGCFNLEYLVLSENSLHGQ-----LFYKKIYLRKLARLHLDANYCTG----EIPKSLSNCSPLEGLYMSDNNLYGN 250 (623)
Q Consensus 183 ---~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~ 250 (623)
+..-.+|+++.+..|.|... ....+..+++|+.|++..|.++- .+..++..++.|+.|.+.+|-++..
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 22224667777777665432 22334456677777777776552 2334556667778888887766543
Q ss_pred cchhc------cCCCCCCEEECcccccccccccc-----c--cCCCCCcEEeCcCccce
Q 038273 251 IPAWL------GNLSSLNDIMMAINHLQGPIPLE-----F--CQLNYLEILDLSENNIS 296 (623)
Q Consensus 251 ~~~~l------~~l~~L~~L~l~~n~~~~~~~~~-----~--~~l~~L~~L~l~~n~~~ 296 (623)
...++ ...++|..|-..+|.+.+..... + ..+|-|..|.+.+|++.
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 33222 12456666666666554322111 1 23455555555555554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.9e-07 Score=85.60 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=46.1
Q ss_pred CCCCCEEECccccccc--cccccccCCCCCcEEeCcCccceeeCCCC-CCCCcccEEEccCccccccCCCCCccCCCcee
Q 038273 258 LSSLNDIMMAINHLQG--PIPLEFCQLNYLEILDLSENNISGTLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 334 (623)
Q Consensus 258 l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 334 (623)
++.++++++.+|.++. .+...+.++|.|+.|+++.|.+...+... ....+|+.+.+.+..+.-.........+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4566666666666652 22334556677777777777666555444 24555666666555543222222244455555
Q ss_pred EEeCCCC
Q 038273 335 TLDLSYN 341 (623)
Q Consensus 335 ~L~L~~n 341 (623)
+|.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6655555
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=3.2e-07 Score=84.21 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=51.2
Q ss_pred CCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC-CchhhhccccCcEEEcccccccccCch------hhcC
Q 038273 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN-IPYWIERLTRLRYLILANNNLEGEVPN------QLCR 377 (623)
Q Consensus 305 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~ 377 (623)
++++..+.+..|.+...-....+..++.+-.|+|+.+++.+- .-+.+.+++.|..|.++++++...... .++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 456666777777665444444455566677788888877642 124566778888888888887643321 2355
Q ss_pred CCCCCEEEc
Q 038273 378 LKQLRLIDL 386 (623)
Q Consensus 378 l~~L~~L~l 386 (623)
+++++.|+=
T Consensus 278 L~~v~vLNG 286 (418)
T KOG2982|consen 278 LTKVQVLNG 286 (418)
T ss_pred ccceEEecC
Confidence 667776653
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=3.5e-07 Score=74.01 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=18.5
Q ss_pred cCcEEEcccccccccCchh---hcCCCCCCEEEccCCcCc
Q 038273 356 RLRYLILANNNLEGEVPNQ---LCRLKQLRLIDLSNNNLF 392 (623)
Q Consensus 356 ~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~ 392 (623)
.+..++|++|++. .++.. +.....|..+++++|.+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk 66 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK 66 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh
Confidence 3455666666654 22332 233344555566666654
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=1.9e-06 Score=78.24 Aligned_cols=214 Identities=22% Similarity=0.138 Sum_probs=127.5
Q ss_pred cccCCCCCcEEECcCCccccccccccC-CC-CCCcccEEEccCCCCCCC----------CCcccCCCCCCcEEEccCCCC
Q 038273 9 PFFNNSKLKVFSGECNEIFVESESSHS-MT-PKFQLESVKLSGSGIHAT----------FPKFLYNQHDLEYVDFSDSNL 76 (623)
Q Consensus 9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~ls~n~l 76 (623)
.+..+..++.+|||+|.+......... .+ ...+|+..+++.-...-. +..++.+|++|+.++||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 345577899999999987543222110 01 112788888876532211 224567999999999999998
Q ss_pred CCcCChH---HhhCCCCCCEEEccCCcCcCcCCC-------------CCCCCCCCCEEEccCCCCCCCCChhhhh----c
Q 038273 77 KGEFPNW---LLENNTNLNTLVLRNNSLSGPFRM-------------PIQPHWHLDTLHVSKNFFQGNIPLEIGV----Y 136 (623)
Q Consensus 77 ~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~----~ 136 (623)
....|+. +.++-..|.+|.+++|.+-...-. ....-|.|++....+|++. ..|..... .
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence 7666663 346678999999999976321111 1234567888888888876 44443321 1
Q ss_pred CCCccEEecccCcccccC-----CcccCCCCCCCEEEccCCcCCccc---chHHhhCCCCCCEEEcccCcCcccccccc-
Q 038273 137 FPRLVYLNLSRNDFNGSI-----PSSIGDMNSLKFLDLSHNQLTGEI---PEHLVIGCFNLEYLVLSENSLHGQLFYKK- 207 (623)
Q Consensus 137 l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 207 (623)
-.+|+.+.+..|.|.... -..+..+.+|++||+..|-++-.. -..+...-+.|+.|.+..|-++......+
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 246777777777765221 112345677888888777665111 11222334456777777776654333221
Q ss_pred -----ccCCCCCEEecccccC
Q 038273 208 -----IYLRKLARLHLDANYC 223 (623)
Q Consensus 208 -----~~~~~L~~L~l~~n~~ 223 (623)
...++|+.|...+|.+
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHhhhhcCCCccccccchhhh
Confidence 1245555555555543
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.00 E-value=1.3e-05 Score=67.83 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=21.0
Q ss_pred ccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273 59 FLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS 121 (623)
Q Consensus 59 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 121 (623)
+|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|.++++++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444455444442 233 344444444444444444442 333333344444444444443
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=9.5e-06 Score=70.61 Aligned_cols=59 Identities=27% Similarity=0.324 Sum_probs=28.5
Q ss_pred CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCC
Q 038273 65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQ 126 (623)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 126 (623)
+...+||++|.+. .++. |..++.|++|.+.+|+|+.+.|.--.-+++|+.|.+++|++.
T Consensus 43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 4455555555544 2221 344555555555555555444433333444555555555443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=1.1e-05 Score=70.13 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=63.0
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273 116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS 195 (623)
Q Consensus 116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 195 (623)
+.+++.+.++. . ...++....+...+||++|.+. ....|..++.|..|.+.+|+|+ .+.+.+-.-+++|+.|.+.
T Consensus 22 ~e~~LR~lkip-~-ienlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP-V-IENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc-c-hhhccccccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 34455544433 1 1224444567778888888776 2345777788888888888887 7777766667778888888
Q ss_pred cCcCcccc-ccccccCCCCCEEecccccCc
Q 038273 196 ENSLHGQL-FYKKIYLRKLARLHLDANYCT 224 (623)
Q Consensus 196 ~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~ 224 (623)
+|++.... ...+..+++|+.|.+-+|.++
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchh
Confidence 77765321 122334445555555444443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=4.3e-07 Score=73.53 Aligned_cols=112 Identities=29% Similarity=0.390 Sum_probs=52.0
Q ss_pred ccEEEccCCCCCCC--CCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEE
Q 038273 42 LESVKLSGSGIHAT--FPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLH 119 (623)
Q Consensus 42 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 119 (623)
+..++|++|.+... .+..+....+|+..++++|.++ .+|..+-...+-+++|++.+|.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei------------------ 89 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI------------------ 89 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh------------------
Confidence 44555555554311 1222334445555555555555 45555444444444444444444
Q ss_pred ccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHH
Q 038273 120 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHL 182 (623)
Q Consensus 120 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 182 (623)
+ .+|.++.. ++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+
T Consensus 90 ------s-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 90 ------S-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred ------h-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 3 34444322 344444444444444 34444444445555555555544 454443
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.98 E-value=1.9e-05 Score=66.85 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=65.2
Q ss_pred cCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCccc
Q 038273 79 EFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI 158 (623)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 158 (623)
.+++..|.++.+|+.+.+.. .+.......|.++++|+.+.+..+ +. .++...+..+++++.+.+.. .+.......|
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccc
Confidence 34556677777788777764 466666667777777888877764 55 66666666666777777765 4444555667
Q ss_pred CCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCC
Q 038273 159 GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKL 213 (623)
Q Consensus 159 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 213 (623)
..+++|+.+++..+ +. .++...|.++ +++.+.+.. .+.......|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77778888877664 55 6777777666 777777765 3444445566666555
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=2.8e-06 Score=91.49 Aligned_cols=151 Identities=22% Similarity=0.248 Sum_probs=89.1
Q ss_pred cccEEEccCCCCCCC-CCcccC-CCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEE
Q 038273 41 QLESVKLSGSGIHAT-FPKFLY-NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 118 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 118 (623)
+|++|+++|...... =|..++ .+|.|+.|.+++-.+...--..+..++|+|..||++++.++.. ..+..+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 677777777543211 122233 4677777777765554221223446677777777777777653 456667777777
Q ss_pred EccCCCCCC-CCChhhhhcCCCccEEecccCcccccC------CcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE
Q 038273 119 HVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSI------PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY 191 (623)
Q Consensus 119 ~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 191 (623)
.+.+-.+.. ..-..++. +++|+.||+|........ -+.-..+|+|+.||.+++.+...+-+.+...-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 776655541 12234555 667888887765433111 1122347889999999888776665655555556655
Q ss_pred EEc
Q 038273 192 LVL 194 (623)
Q Consensus 192 L~l 194 (623)
+-+
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=8.7e-06 Score=53.28 Aligned_cols=36 Identities=33% Similarity=0.637 Sum_probs=14.5
Q ss_pred cCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486 (623)
Q Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (623)
+|++|++++|+|+. +|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2223444444444444444444
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.86 E-value=4.7e-07 Score=87.13 Aligned_cols=277 Identities=19% Similarity=0.157 Sum_probs=117.4
Q ss_pred cccEEEccCCCCCCC--CCcccCCCCCCcEEEccCCC-CCCcCChHHhhCCCCCCEEEccCC-cCcCcCCC-CCCCCCCC
Q 038273 41 QLESVKLSGSGIHAT--FPKFLYNQHDLEYVDFSDSN-LKGEFPNWLLENNTNLNTLVLRNN-SLSGPFRM-PIQPHWHL 115 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L 115 (623)
.|+.|.+++|.-.+. +-..-.++++++.|++.++. +++..-.++-..+++|+.|++..| .++..... .-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 456666666654332 12233455666666665554 232222233345566666666553 22221111 12345566
Q ss_pred CEEEccCCC-CCCCCChhhhhcCCCccEEecccCcccc--cCCcccCCCCCCCEEEccCCc-CCcccchHHhhCCCCCCE
Q 038273 116 DTLHVSKNF-FQGNIPLEIGVYFPRLVYLNLSRNDFNG--SIPSSIGDMNSLKFLDLSHNQ-LTGEIPEHLVIGCFNLEY 191 (623)
Q Consensus 116 ~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 191 (623)
++++++.+. +++.--..+...++.++.+.+.+|.-.+ .+-..-+.+..+..+++..|. +++.--..+..++..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 666665553 2222222223333444555444432110 000011223334444444432 221111122234555566
Q ss_pred EEcccCcC-cccccc-ccccCCCCCEEeccccc-CccccCccC-cCCCCCcEEECcCCcCccc--cchhccCCCCCCEEE
Q 038273 192 LVLSENSL-HGQLFY-KKIYLRKLARLHLDANY-CTGEIPKSL-SNCSPLEGLYMSDNNLYGN--IPAWLGNLSSLNDIM 265 (623)
Q Consensus 192 L~l~~n~l-~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ 265 (623)
|..+++.- +..... --.+.++|+.+-++.++ ++..-...+ .+++.|+.+++..+..... +...-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 65555432 111111 12244566666665553 221111111 2455666666665543211 111123456666666
Q ss_pred Cccccccccc-----cccccCCCCCcEEeCcCccceee--CCCCCCCCcccEEEccCcc
Q 038273 266 MAINHLQGPI-----PLEFCQLNYLEILDLSENNISGT--LPSCSSHSTIQQVHLSKNM 317 (623)
Q Consensus 266 l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~ 317 (623)
++.+...... ...-..+..|..+.++++..... ......+++|+.+++.++.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 6655432111 11123455666677776654321 2222345667766666654
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.3e-05 Score=52.46 Aligned_cols=38 Identities=34% Similarity=0.637 Sum_probs=32.2
Q ss_pred CCCcEEECCCCcccccCccccccCCCCCeeecccCcccc
Q 038273 473 KQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511 (623)
Q Consensus 473 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 511 (623)
++|++|++++|+|+ .+|..+.+++.|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 466678999999999999999984
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=3.7e-05 Score=76.20 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccc-cccccCchhhcCCCCCCE
Q 038273 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN-NLEGEVPNQLCRLKQLRL 383 (623)
Q Consensus 305 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 383 (623)
+..++.|++++|.+. .+|. -..+|++|++++|.--...|+.+. ++|+.|++++| .+. .+| ++|+.
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccce
Confidence 456777777777553 2331 134577777776543334554442 46777777776 333 233 24666
Q ss_pred EEccCCc
Q 038273 384 IDLSNNN 390 (623)
Q Consensus 384 L~l~~n~ 390 (623)
|+++.+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 6665544
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=4.3e-06 Score=90.07 Aligned_cols=150 Identities=17% Similarity=0.255 Sum_probs=104.3
Q ss_pred CCCcEEEccCCC-CCCcCChHHhhCCCCCCEEEccCCcCcC-cCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc
Q 038273 64 HDLEYVDFSDSN-LKGEFPNWLLENNTNLNTLVLRNNSLSG-PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV 141 (623)
Q Consensus 64 ~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 141 (623)
.+|++||++|.. +...-|..+...+|+|++|.+.+-.+.. .......++++|..||+|++.++ .+ ..+.. +++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~-LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISR-LKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhc-cccHH
Confidence 689999999865 3334455666789999999998866643 22334567899999999999988 44 45555 78999
Q ss_pred EEecccCcccc-cCCcccCCCCCCCEEEccCCcCCcccchHH------hhCCCCCCEEEcccCcCccccccccc-cCCCC
Q 038273 142 YLNLSRNDFNG-SIPSSIGDMNSLKFLDLSHNQLTGEIPEHL------VIGCFNLEYLVLSENSLHGQLFYKKI-YLRKL 213 (623)
Q Consensus 142 ~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L 213 (623)
.|.+.+=.+.. ..-..+.++++|++||+|..... ..+..+ ...+|+|+.||.+++.+.......+. .-++|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 99888766553 22235778999999999987655 333111 13588999999999887764444332 23445
Q ss_pred CEEe
Q 038273 214 ARLH 217 (623)
Q Consensus 214 ~~L~ 217 (623)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 4443
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.77 E-value=5.1e-07 Score=86.89 Aligned_cols=278 Identities=19% Similarity=0.136 Sum_probs=171.6
Q ss_pred CCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCC--CCcccCCCCCCcEEEccCC-CCCCcCChHHhhCCCC
Q 038273 14 SKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHAT--FPKFLYNQHDLEYVDFSDS-NLKGEFPNWLLENNTN 90 (623)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~~ 90 (623)
..||.|.+.++.-....+.......++++++|.+.+|..... ....-..|++|++|++..| .++...-..+...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 378999999987555444443345566999999999974322 2222346899999999985 4554334445678999
Q ss_pred CCEEEccCCc-CcCcC-CCCCCCCCCCCEEEccCCCCCCCCChh----hhhcCCCccEEecccCc-ccccCCcc-cCCCC
Q 038273 91 LNTLVLRNNS-LSGPF-RMPIQPHWHLDTLHVSKNFFQGNIPLE----IGVYFPRLVYLNLSRND-FNGSIPSS-IGDMN 162 (623)
Q Consensus 91 L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~----~~~~l~~L~~L~L~~n~-i~~~~~~~-~~~l~ 162 (623)
|++|+++.|. |++.. .....++..++.+.+.+|. ..+.. +...++-+..+++..|. +++..-.. -..+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 9999999984 44311 1224556667777777653 22222 22334456677766663 33221111 23577
Q ss_pred CCCEEEccCCc-CCcccchHHhhCCCCCCEEEcccCcC-cccccccc-ccCCCCCEEecccccCcc--ccCccCcCCCCC
Q 038273 163 SLKFLDLSHNQ-LTGEIPEHLVIGCFNLEYLVLSENSL-HGQLFYKK-IYLRKLARLHLDANYCTG--EIPKSLSNCSPL 237 (623)
Q Consensus 163 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~-~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L 237 (623)
.|++|+.+++. ++..+-..+..++.+|+.+-++.+.. +......+ .+++.|+.+++..+.... .+...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 88888888764 33233334446788999999988863 32222222 357788888888875431 122223577889
Q ss_pred cEEECcCCcC-cccc----chhccCCCCCCEEECcccccc-ccccccccCCCCCcEEeCcCcc
Q 038273 238 EGLYMSDNNL-YGNI----PAWLGNLSSLNDIMMAINHLQ-GPIPLEFCQLNYLEILDLSENN 294 (623)
Q Consensus 238 ~~L~L~~n~l-~~~~----~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~ 294 (623)
+++.++.+.. ++.. ...-..+..|+.+.++++... ...-+.+..+++|+.+++-.+.
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 9999987753 2221 111234677888888888654 2334456678888888887765
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00013 Score=72.39 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=27.1
Q ss_pred CCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCC
Q 038273 62 NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKN 123 (623)
Q Consensus 62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 123 (623)
.+.++++|++++|.++ .+|. -..+|++|.+++|.--...|..+ .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3455666666666555 4451 12346666665543222233322 135666666655
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.27 E-value=2.4e-05 Score=83.19 Aligned_cols=63 Identities=32% Similarity=0.192 Sum_probs=27.5
Q ss_pred CCCCCCEEEccCCc-CCcccchHHhhCCCCCCEEEcccCc-Ccccccc-ccccCCCCCEEeccccc
Q 038273 160 DMNSLKFLDLSHNQ-LTGEIPEHLVIGCFNLEYLVLSENS-LHGQLFY-KKIYLRKLARLHLDANY 222 (623)
Q Consensus 160 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~~L~~L~l~~n~ 222 (623)
.+++|+.|+++.+. ++...-..+...+++|++|.+.++. ++..... ....++.|++|+++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555554 3322222232335555555554444 3322221 12234555555555543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00035 Score=63.84 Aligned_cols=101 Identities=27% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCC--CCCCCCChhhhhcCCCccEEecccCcccccCCcc---cCCCCC
Q 038273 89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKN--FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS---IGDMNS 163 (623)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~l~~ 163 (623)
..|+.|++.+..++.. ..+..+++|++|.++.| ++.+.++.-.-. +|+|++|++++|+|.. ++. +..+.+
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCcccc--ccccchhhhhcc
Confidence 3444444444444321 23344555666666665 444333333333 3677777777776652 222 345566
Q ss_pred CCEEEccCCcCCc--ccchHHhhCCCCCCEEEc
Q 038273 164 LKFLDLSHNQLTG--EIPEHLVIGCFNLEYLVL 194 (623)
Q Consensus 164 L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l 194 (623)
|..|++.+|..+. .--..+|.-+++|++|+-
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 6677777766552 112344555666666654
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=6.1e-05 Score=80.06 Aligned_cols=189 Identities=20% Similarity=0.073 Sum_probs=104.8
Q ss_pred CCCCCcEEEccCCCCCCcC-ChHHhhCCCCCCEEEccCC-cCcCcC----CCCCCCCCCCCEEEccCCC-CCCCCChhhh
Q 038273 62 NQHDLEYVDFSDSNLKGEF-PNWLLENNTNLNTLVLRNN-SLSGPF----RMPIQPHWHLDTLHVSKNF-FQGNIPLEIG 134 (623)
Q Consensus 62 ~~~~L~~L~ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~ 134 (623)
.++.|+.|.+.++.-.... -..+...+++|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4688888888876432121 1234467888888888863 211111 1234456788888888887 5544445555
Q ss_pred hcCCCccEEecccCc-ccccCC-cccCCCCCCCEEEccCCcCCc-c-cchHHhhCCCCCCEEEcccCcCccccccccccC
Q 038273 135 VYFPRLVYLNLSRND-FNGSIP-SSIGDMNSLKFLDLSHNQLTG-E-IPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYL 210 (623)
Q Consensus 135 ~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 210 (623)
..+++|+.|.+.+|. +++..- .....+++|++|+++.+.... . +... ..++++++.|.+....- +
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCC----------C
Confidence 557889998877776 443222 223567889999998876531 1 2222 34577777765543321 3
Q ss_pred CCCCEEecccccCc---cccCccCcCCCCCcEEECcCCcCcccc-chhccCCCCC
Q 038273 211 RKLARLHLDANYCT---GEIPKSLSNCSPLEGLYMSDNNLYGNI-PAWLGNLSSL 261 (623)
Q Consensus 211 ~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L 261 (623)
+.++.+.+.+.... .........+++++.+.+..+...... ...+.+++.|
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 33444444332211 111223456677777777666533222 2334444444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.0015 Score=59.83 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=67.7
Q ss_pred CCCccEEEccCCcccccCCccccccccCCeeeCCCC--cccccCCccCCCCCCCcEEECCCCccccc-CccccccCCCCC
Q 038273 424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHN--NLTGVIPVSFSNLKQVESLDVSYNNLNGK-IPPQLVELNVLA 500 (623)
Q Consensus 424 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 500 (623)
+..++.+.+.+..++.. ..+..+++|+.|.++.| .+.+-.+-....+|+|++|++++|+|... --..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 45666666777666532 35677889999999999 55555555556679999999999988731 112345677788
Q ss_pred eeecccCcccccCC---CCccccCCCCCccc
Q 038273 501 VFSVAHNNLSGKIP---EWTAQFTTFKEDSY 528 (623)
Q Consensus 501 ~L~l~~N~l~~~~~---~~~~~~~~l~~l~l 528 (623)
.|++.+|.-+.... ..+.-+++|+.++-
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 89999987765322 12333556665543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=8e-05 Score=68.18 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=16.2
Q ss_pred CCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcC
Q 038273 159 GDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL 199 (623)
Q Consensus 159 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 199 (623)
.+++.|++|.|+-|.|+ ++.. +..|++|++|+|..|.|
T Consensus 38 ~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCI 75 (388)
T ss_pred HhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhccc
Confidence 34444444444444444 3322 22344444444444444
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00019 Score=65.77 Aligned_cols=84 Identities=24% Similarity=0.216 Sum_probs=61.8
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchH-HhhCCCCCC
Q 038273 112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEH-LVIGCFNLE 190 (623)
Q Consensus 112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~ 190 (623)
+.+.+.|++.++.+. . .++...++.|++|.|+-|+|+.. ..+..|++|+.|.|+.|.|. .+.+- -+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 345667788888776 2 35666678899999999998843 45788999999999999987 55543 235778888
Q ss_pred EEEcccCcCcc
Q 038273 191 YLVLSENSLHG 201 (623)
Q Consensus 191 ~L~l~~n~l~~ 201 (623)
.|.|..|.-.+
T Consensus 92 ~LWL~ENPCc~ 102 (388)
T KOG2123|consen 92 TLWLDENPCCG 102 (388)
T ss_pred hHhhccCCccc
Confidence 88887776544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.04 E-value=0.011 Score=32.03 Aligned_cols=12 Identities=58% Similarity=0.675 Sum_probs=5.7
Q ss_pred CcEEECCCCccc
Q 038273 475 VESLDVSYNNLN 486 (623)
Q Consensus 475 L~~L~Ls~n~l~ 486 (623)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.33 E-value=0.016 Score=31.32 Aligned_cols=19 Identities=58% Similarity=0.791 Sum_probs=9.9
Q ss_pred CCeeeCCCCcccccCCccCC
Q 038273 451 IRALNFSHNNLTGVIPVSFS 470 (623)
Q Consensus 451 L~~L~L~~n~l~~~~~~~~~ 470 (623)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666665 3333344
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.98 E-value=0.001 Score=68.80 Aligned_cols=90 Identities=29% Similarity=0.285 Sum_probs=47.1
Q ss_pred CCCCCCEEEccCCcCCcccc---hHHhhCCCC-CCEEEcccCcCccc----cccccccC-CCCCEEecccccCcccc---
Q 038273 160 DMNSLKFLDLSHNQLTGEIP---EHLVIGCFN-LEYLVLSENSLHGQ----LFYKKIYL-RKLARLHLDANYCTGEI--- 227 (623)
Q Consensus 160 ~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~-L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L~l~~n~~~~~~--- 227 (623)
...++++|++.+|.++...- ...+...+. +..+++..|.+... ....+..+ ..++.++++.|.++...
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 34555666666655441111 111122223 44566666655432 12223333 46677777777766432
Q ss_pred -CccCcCCCCCcEEECcCCcCcc
Q 038273 228 -PKSLSNCSPLEGLYMSDNNLYG 249 (623)
Q Consensus 228 -~~~~~~l~~L~~L~L~~n~l~~ 249 (623)
...+..++.++.+.+++|.+..
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 2445566788888888887754
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.81 E-value=0.066 Score=26.76 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=4.6
Q ss_pred CCcEEEccCCCCC
Q 038273 65 DLEYVDFSDSNLK 77 (623)
Q Consensus 65 ~L~~L~ls~n~l~ 77 (623)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.51 E-value=0.13 Score=28.99 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=15.2
Q ss_pred CCCCcEEEccCCCCCCcCChHHh
Q 038273 63 QHDLEYVDFSDSNLKGEFPNWLL 85 (623)
Q Consensus 63 ~~~L~~L~ls~n~l~~~~~~~~~ 85 (623)
+++|++|++++|.++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 6776654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.51 E-value=0.13 Score=28.99 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=15.2
Q ss_pred CCCCcEEEccCCCCCCcCChHHh
Q 038273 63 QHDLEYVDFSDSNLKGEFPNWLL 85 (623)
Q Consensus 63 ~~~L~~L~ls~n~l~~~~~~~~~ 85 (623)
+++|++|++++|.++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 6776654
No 77
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.17 E-value=0.032 Score=67.63 Aligned_cols=43 Identities=28% Similarity=0.532 Sum_probs=31.5
Q ss_pred ecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 038273 503 SVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA 550 (623)
Q Consensus 503 ~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~ 550 (623)
||++|+|+.+.+..|..+++|+.|++++|||.| +|+..|+..|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C-----DC~L~WL~~W 43 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC-----DCGLARLPRW 43 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc-----ccccHHHHHH
Confidence 567777777777777777888888888899999 5555554444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.64 E-value=0.18 Score=28.44 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=16.5
Q ss_pred CCCCCEEEccCCcCCcccchHHhh
Q 038273 161 MNSLKFLDLSHNQLTGEIPEHLVI 184 (623)
Q Consensus 161 l~~L~~L~l~~n~l~~~~~~~~~~ 184 (623)
+++|++|++++|++. .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777888888777 77777653
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.64 E-value=0.18 Score=28.44 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=16.5
Q ss_pred CCCCCEEEccCCcCCcccchHHhh
Q 038273 161 MNSLKFLDLSHNQLTGEIPEHLVI 184 (623)
Q Consensus 161 l~~L~~L~l~~n~l~~~~~~~~~~ 184 (623)
+++|++|++++|++. .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777888888777 77777653
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.55 E-value=0.0091 Score=53.62 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=48.5
Q ss_pred CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273 425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV 504 (623)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 504 (623)
...+.||++.|.+. .....+.-++.+..|+++.|++. ..|..+.+...+..+++.+|..+ ..|-++...+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34555666666554 33344555566666666666665 45555666666666666666655 45556666666666666
Q ss_pred ccCcc
Q 038273 505 AHNNL 509 (623)
Q Consensus 505 ~~N~l 509 (623)
-.|.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66654
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.97 E-value=0.0022 Score=66.46 Aligned_cols=185 Identities=24% Similarity=0.233 Sum_probs=104.7
Q ss_pred CcEEECcCCccccccccccC--CCCCCcccEEEccCCCCCCCC----CcccCCC-CCCcEEEccCCCCCCc----CChHH
Q 038273 16 LKVFSGECNEIFVESESSHS--MTPKFQLESVKLSGSGIHATF----PKFLYNQ-HDLEYVDFSDSNLKGE----FPNWL 84 (623)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~ls~n~l~~~----~~~~~ 84 (623)
+..|+|..|.+......... .-...+|..|++++|.+...- -..+... ..+++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67777777776543222111 112227778888888776331 1222222 4567777777776633 22232
Q ss_pred hhCCCCCCEEEccCCcCcC----cCCCC----CCCCCCCCEEEccCCCCCCCCChhh---hhcCCC-ccEEecccCcccc
Q 038273 85 LENNTNLNTLVLRNNSLSG----PFRMP----IQPHWHLDTLHVSKNFFQGNIPLEI---GVYFPR-LVYLNLSRNDFNG 152 (623)
Q Consensus 85 ~~~l~~L~~L~L~~n~i~~----~~~~~----~~~l~~L~~L~l~~n~l~~~~p~~~---~~~l~~-L~~L~L~~n~i~~ 152 (623)
.....++.++++.|.+.. ..+.. +....++++|.+++|.++...-..+ ....+. ++.+++..|++.+
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 346777777777776531 11222 3346778888888887662111111 111233 6668888887664
Q ss_pred c----CCcccCCC-CCCCEEEccCCcCCcccchHH---hhCCCCCCEEEcccCcCcc
Q 038273 153 S----IPSSIGDM-NSLKFLDLSHNQLTGEIPEHL---VIGCFNLEYLVLSENSLHG 201 (623)
Q Consensus 153 ~----~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~~ 201 (623)
. ....+..+ ..+++++++.|.++..-...+ ...++.++.+.+++|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 22234445 677888998888874333222 2356688888888888765
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.42 E-value=0.023 Score=50.10 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=39.1
Q ss_pred CCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCC-CCCChhhhhcCCCccEEecccC-cccccCCcccCCCCCCCEEE
Q 038273 91 LNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQ-GNIPLEIGVYFPRLVYLNLSRN-DFNGSIPSSIGDMNSLKFLD 168 (623)
Q Consensus 91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~ 168 (623)
++.++-+++.|.++.-+.+..++.++.|.+.+|.-- +.--..+....++|+.|++++| .|+...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555554444444445555555555554311 0011112223456777777765 34443344455556666665
Q ss_pred ccC
Q 038273 169 LSH 171 (623)
Q Consensus 169 l~~ 171 (623)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.01 E-value=0.016 Score=52.04 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=43.9
Q ss_pred ccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCC
Q 038273 445 IGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFK 524 (623)
Q Consensus 445 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 524 (623)
+......+.||++.|++. -....|+-++.|..||++.|++. ..|..+.....+..+++.+|..+ -.|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344445555555555544 22334444555555555555555 44555555555555555555554 3444455555555
Q ss_pred CccccCCCC
Q 038273 525 EDSYEGNPL 533 (623)
Q Consensus 525 ~l~l~~Np~ 533 (623)
+.+.-+||+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555553
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.96 E-value=0.25 Score=27.24 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=6.5
Q ss_pred CCCcEEECCCCccc
Q 038273 473 KQVESLDVSYNNLN 486 (623)
Q Consensus 473 ~~L~~L~Ls~n~l~ 486 (623)
++|++|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.10 E-value=0.15 Score=45.10 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=18.4
Q ss_pred CccEEecccCcccccCCcccCCCCCCCEEEccCCc
Q 038273 139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ 173 (623)
Q Consensus 139 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 173 (623)
.++.+|-+++.|..+.-..+.+++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 35555555555554444445555555555555553
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.58 E-value=5.8 Score=40.23 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=29.5
Q ss_pred eeEEeCCCCcCCCCCchh---hhccccCcEEEcccccccc----cCchhhcCCCCCCEEEccCCcC
Q 038273 333 IVTLDLSYNSFSGNIPYW---IERLTRLRYLILANNNLEG----EVPNQLCRLKQLRLIDLSNNNL 391 (623)
Q Consensus 333 L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l 391 (623)
++.+.++.|....-.... ...-+.+..|++++|.... .+|........++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 455556666555322221 2223567777777776542 2333444444555555555543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.86 E-value=2.6 Score=23.76 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=8.5
Q ss_pred CCCcEEECCCCccc
Q 038273 473 KQVESLDVSYNNLN 486 (623)
Q Consensus 473 ~~L~~L~Ls~n~l~ 486 (623)
++|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.67 E-value=26 Score=35.81 Aligned_cols=61 Identities=18% Similarity=0.043 Sum_probs=31.5
Q ss_pred CCcEEEccCCCCCCcCChHHh--hCCCCCCEEEccCCcCc---CcCCCCCCCCCCCCEEEccCCCC
Q 038273 65 DLEYVDFSDSNLKGEFPNWLL--ENNTNLNTLVLRNNSLS---GPFRMPIQPHWHLDTLHVSKNFF 125 (623)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l 125 (623)
.+.++|++.|...+.+|..+- ..-.-++.++.+...++ ...+...+.-+++...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 466777777776666665431 11123555555555443 11222334445666666666643
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.25 E-value=2.8 Score=23.55 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=7.4
Q ss_pred CCcEEECCCCccc
Q 038273 474 QVESLDVSYNNLN 486 (623)
Q Consensus 474 ~L~~L~Ls~n~l~ 486 (623)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 90
>PF15102 TMEM154: TMEM154 protein family
Probab=66.70 E-value=4.2 Score=34.06 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=16.3
Q ss_pred eeeehhh-HHHHHHHHHhhhhhhccccchhh
Q 038273 564 SFYITFT-SSYVIVILAIIGVLYVNPHWRRR 593 (623)
Q Consensus 564 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 593 (623)
.+++.+. +.++++++++++++++++|||.+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 3444444 33344455555666666777664
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.03 E-value=5.2 Score=22.96 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=9.4
Q ss_pred CCCcEEECCCCccc
Q 038273 473 KQVESLDVSYNNLN 486 (623)
Q Consensus 473 ~~L~~L~Ls~n~l~ 486 (623)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777665
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.57 E-value=4.3 Score=42.04 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=17.9
Q ss_pred CCCCCcEEEccCCCCCCcCCh--HHhhCCCCCCEEEccCC
Q 038273 62 NQHDLEYVDFSDSNLKGEFPN--WLLENNTNLNTLVLRNN 99 (623)
Q Consensus 62 ~~~~L~~L~ls~n~l~~~~~~--~~~~~l~~L~~L~L~~n 99 (623)
+.+.+..+.|++|++. .+.. .+....|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 4455555556665544 1111 12234455566666555
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.68 E-value=4.9 Score=41.65 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=29.4
Q ss_pred cccCCeeeCCCCcccccCC--ccCCCCCCCcEEECCCC--cccccCcccccc--CCCCCeeecccCcccc
Q 038273 448 LTSIRALNFSHNNLTGVIP--VSFSNLKQVESLDVSYN--NLNGKIPPQLVE--LNVLAVFSVAHNNLSG 511 (623)
Q Consensus 448 l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~--l~~L~~L~l~~N~l~~ 511 (623)
.+.+..++|++|++..+.- .--...|+|.+|+|++| .+.. ...+.. ..-|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3455666677776643211 11123456667777776 3221 111111 2334555566666544
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.84 E-value=15 Score=20.41 Aligned_cols=13 Identities=8% Similarity=-0.033 Sum_probs=7.8
Q ss_pred CCCCcEEECcCCc
Q 038273 13 NSKLKVFSGECNE 25 (623)
Q Consensus 13 l~~L~~L~ls~~~ 25 (623)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3566666666664
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.00 E-value=23 Score=44.69 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.6
Q ss_pred eCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273 455 NFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486 (623)
Q Consensus 455 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (623)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999888889999999999999999876
No 96
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=32.20 E-value=8.6 Score=25.68 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc
Q 038273 531 NPLLCGKPLPDCDVAAVPEASNE 553 (623)
Q Consensus 531 Np~~C~~~l~~C~~~~~~~~~~~ 553 (623)
|||.| +|+..|+..|...
T Consensus 1 NP~~C-----dC~l~~~~~w~~~ 18 (51)
T smart00082 1 NPFIC-----DCELRWLLRWLQA 18 (51)
T ss_pred CCccC-----cCCchHHHHHHHh
Confidence 89999 7887777766633
No 97
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=27.11 E-value=33 Score=33.32 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=7.8
Q ss_pred HHHhhhhhhccccchhh
Q 038273 577 ILAIIGVLYVNPHWRRR 593 (623)
Q Consensus 577 ~~~~~~~~~~~~~~~~~ 593 (623)
+++|++++|+.+|.||+
T Consensus 268 IVLIMvIIYLILRYRRK 284 (299)
T PF02009_consen 268 IVLIMVIIYLILRYRRK 284 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445554555554
No 98
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=23.42 E-value=75 Score=26.01 Aligned_cols=12 Identities=33% Similarity=0.241 Sum_probs=4.8
Q ss_pred hhhhccccchhh
Q 038273 582 GVLYVNPHWRRR 593 (623)
Q Consensus 582 ~~~~~~~~~~~~ 593 (623)
..++++++.|++
T Consensus 118 ~~~~~yr~~r~~ 129 (139)
T PHA03099 118 CLLSVYRFTRRT 129 (139)
T ss_pred HHHhhheeeecc
Confidence 334444434443
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.75 E-value=72 Score=28.89 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=11.9
Q ss_pred cceeeehhhHHHHHHHHHhhhhhh
Q 038273 562 MGSFYITFTSSYVIVILAIIGVLY 585 (623)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~ 585 (623)
...+++++++++++++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~ 59 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVL 59 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHH
Confidence 344555555555555544444433
No 100
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.62 E-value=78 Score=20.08 Aligned_cols=10 Identities=0% Similarity=0.112 Sum_probs=3.8
Q ss_pred ehhhHHHHHH
Q 038273 567 ITFTSSYVIV 576 (623)
Q Consensus 567 ~~~~~~~~~~ 576 (623)
+++++...++
T Consensus 15 ~~VvVPV~vI 24 (40)
T PF08693_consen 15 VGVVVPVGVI 24 (40)
T ss_pred EEEEechHHH
Confidence 3344433333
No 101
>PF15050 SCIMP: SCIMP protein
Probab=22.56 E-value=46 Score=26.72 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=11.5
Q ss_pred eehhhHHHHHHHHHhhhhhhccccchhh
Q 038273 566 YITFTSSYVIVILAIIGVLYVNPHWRRR 593 (623)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (623)
.+.++++++++-+++..++|...+|..|
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333222333334444455544
No 102
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=20.28 E-value=1e+02 Score=23.10 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=9.3
Q ss_pred cccceeeehhhHHHHHHHHHh
Q 038273 560 IDMGSFYITFTSSYVIVILAI 580 (623)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~ 580 (623)
.+..++++..+.+..+++..+
T Consensus 12 lp~~~yyiiA~gga~llL~~v 32 (87)
T PF11980_consen 12 LPPYWYYIIAMGGALLLLVAV 32 (87)
T ss_pred CCceeeHHHhhccHHHHHHHH
Confidence 344455554444444444333
Done!