Query 038273
Match_columns 623
No_of_seqs 455 out of 4286
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 15:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.2E-64 7.4E-69 561.4 43.1 508 39-552 199-758 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.5E-60 2.6E-64 524.9 36.9 517 9-535 121-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-55 5E-60 486.5 43.8 534 9-553 44-637 (680)
4 3t6q_A CD180 antigen; protein- 100.0 2.5E-55 8.4E-60 478.3 39.1 501 15-551 34-572 (606)
5 3j0a_A TOLL-like receptor 5; m 100.0 5E-55 1.7E-59 491.1 37.8 488 12-539 22-565 (844)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-54 5.8E-59 471.7 33.3 496 14-552 32-571 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 9.3E-52 3.2E-56 456.2 44.7 517 14-535 25-598 (680)
8 3t6q_A CD180 antigen; protein- 100.0 6.3E-52 2.1E-56 451.5 40.1 478 7-514 50-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-50 4.8E-55 440.8 33.7 480 15-534 12-534 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.5E-50 1.5E-54 450.9 38.5 476 7-514 41-564 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.7E-49 5.7E-54 429.5 36.8 487 15-537 29-534 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 8.6E-48 2.9E-52 416.1 32.2 474 8-515 46-536 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-48 1.9E-52 415.3 29.7 466 14-537 26-513 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-46 1.5E-50 400.6 31.8 449 8-514 44-514 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-47 7.7E-52 407.5 21.1 460 44-550 4-493 (520)
16 4eco_A Uncharacterized protein 100.0 1.3E-47 4.4E-52 416.8 17.9 434 41-511 82-601 (636)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-45 9E-50 402.2 32.9 496 15-551 53-592 (635)
18 4eco_A Uncharacterized protein 100.0 3.4E-47 1.2E-51 413.4 17.5 444 64-536 81-602 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 1.4E-46 4.7E-51 414.5 22.5 461 41-535 324-865 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-44 5.9E-49 385.2 26.9 453 17-514 3-485 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-43 5.7E-48 380.6 25.3 457 41-537 32-513 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 7.2E-43 2.5E-47 385.0 30.7 444 64-535 323-841 (876)
23 3v47_A TOLL-like receptor 5B a 100.0 1.7E-41 5.8E-46 356.0 29.0 380 116-538 13-412 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-41 5.1E-46 365.4 25.4 461 10-514 27-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3.6E-40 1.2E-44 345.9 26.7 383 43-515 13-413 (455)
26 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-39 1.3E-43 353.3 35.8 471 8-513 70-583 (635)
27 1jl5_A Outer protein YOPM; leu 100.0 1.5E-38 5.1E-43 330.3 26.0 402 40-535 11-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.7E-38 9.4E-43 328.3 25.3 414 8-517 5-436 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 1.7E-37 5.7E-42 327.3 25.0 323 165-537 14-336 (477)
30 1o6v_A Internalin A; bacterial 100.0 1.1E-35 3.8E-40 311.8 33.1 190 63-272 45-234 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 7.1E-37 2.4E-41 318.0 23.4 376 41-517 19-394 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 1.7E-36 5.8E-41 319.6 26.7 319 117-486 15-333 (477)
33 1o6v_A Internalin A; bacterial 100.0 1.2E-35 4.1E-40 311.6 31.3 347 87-512 44-390 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 3.7E-35 1.3E-39 305.0 29.1 358 9-493 37-394 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 7.6E-35 2.6E-39 298.5 24.6 154 138-295 45-198 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 3.2E-33 1.1E-37 286.5 28.6 334 112-537 44-377 (390)
37 3oja_B Anopheles plasmodium-re 100.0 7.3E-34 2.5E-38 307.0 24.6 332 138-536 51-382 (597)
38 4fmz_A Internalin; leucine ric 100.0 2.3E-32 8E-37 275.6 29.8 302 41-392 45-346 (347)
39 1ogq_A PGIP-2, polygalacturona 100.0 1E-33 3.5E-38 280.1 18.7 260 235-543 50-313 (313)
40 4fmz_A Internalin; leucine ric 100.0 3.1E-32 1.1E-36 274.7 27.6 307 157-533 39-345 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.8E-32 9.7E-37 294.6 28.5 311 112-488 50-360 (597)
42 1xku_A Decorin; proteoglycan, 100.0 2.8E-30 9.5E-35 258.2 29.4 244 41-296 32-276 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 9.7E-31 3.3E-35 261.7 26.0 68 440-507 255-330 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-34 4.5E-39 304.1 -2.5 308 65-392 4-354 (461)
45 1xku_A Decorin; proteoglycan, 100.0 3.7E-30 1.3E-34 257.3 29.0 289 114-508 32-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-34 9.5E-39 301.7 -1.3 363 113-512 3-413 (461)
47 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-31 1.2E-35 262.0 16.8 248 41-294 51-302 (313)
48 2ft3_A Biglycan; proteoglycan, 100.0 8.2E-30 2.8E-34 254.9 25.3 243 41-296 34-277 (332)
49 3zyj_A Leucine-rich repeat-con 100.0 6.7E-29 2.3E-33 258.3 21.4 249 214-537 46-295 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 1.3E-28 4.5E-33 257.0 21.0 232 235-538 75-307 (452)
51 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4E-33 248.8 17.9 280 161-487 30-315 (353)
52 3ogk_B Coronatine-insensitive 100.0 1.7E-30 5.7E-35 281.9 0.5 380 112-512 111-528 (592)
53 2z80_A TOLL-like receptor 2, v 100.0 1.3E-28 4.3E-33 248.6 14.2 281 186-536 30-316 (353)
54 3ogk_B Coronatine-insensitive 100.0 1.8E-30 6.3E-35 281.6 -0.1 159 328-507 375-548 (592)
55 2z66_A Variable lymphocyte rec 100.0 1E-27 3.5E-32 236.9 19.2 249 190-511 10-262 (306)
56 2z66_A Variable lymphocyte rec 100.0 2.4E-27 8.2E-32 234.3 21.5 281 67-378 10-297 (306)
57 3zyi_A Leucine-rich repeat-con 100.0 1.2E-26 4E-31 242.2 25.3 248 42-296 56-303 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 1.5E-26 5.1E-31 240.5 24.8 248 42-296 45-292 (440)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-27 1.1E-31 230.7 16.5 224 43-272 14-238 (285)
60 4fcg_A Uncharacterized protein 99.9 7.4E-27 2.5E-31 232.2 18.9 232 41-295 82-313 (328)
61 4fcg_A Uncharacterized protein 99.9 2.3E-26 8E-31 228.6 21.3 224 89-318 81-313 (328)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.7E-31 226.9 17.9 225 116-369 14-239 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-27 4.7E-32 236.8 9.5 262 217-514 16-280 (317)
64 2p1m_B Transport inhibitor res 99.9 6.3E-30 2.1E-34 277.6 -8.3 233 59-293 61-324 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 8.6E-28 2.9E-32 238.3 4.1 267 236-537 11-278 (317)
66 3oja_A Leucine-rich immune mol 99.9 1.4E-26 4.9E-31 242.7 10.8 236 234-505 33-270 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-24 8.4E-29 230.1 28.0 267 41-378 41-307 (622)
68 2p1m_B Transport inhibitor res 99.9 1.1E-28 3.8E-33 267.7 -6.2 444 10-510 62-544 (594)
69 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4.1E-31 229.4 8.4 244 112-367 42-308 (312)
70 1wwl_A Monocyte differentiatio 99.9 1.4E-26 4.7E-31 229.0 7.5 246 41-296 44-309 (312)
71 3g06_A SSPH2 (leucine-rich rep 99.9 5E-24 1.7E-28 227.7 27.5 268 65-403 41-308 (622)
72 2o6q_A Variable lymphocyte rec 99.9 1.7E-24 5.7E-29 209.4 21.0 204 308-537 18-221 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5.1E-29 210.7 18.2 207 307-537 29-240 (276)
74 3oja_A Leucine-rich immune mol 99.9 3.7E-25 1.3E-29 232.0 13.5 234 212-481 35-270 (487)
75 1p9a_G Platelet glycoprotein I 99.9 2.2E-24 7.6E-29 210.2 16.1 202 306-537 10-211 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 2.2E-23 7.4E-28 202.5 21.4 222 117-344 11-237 (276)
77 2o6q_A Variable lymphocyte rec 99.9 6.8E-23 2.3E-27 198.0 22.4 199 41-245 17-215 (270)
78 3rfs_A Internalin B, repeat mo 99.9 4.8E-23 1.7E-27 199.2 13.6 224 42-281 21-244 (272)
79 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.2E-27 196.4 16.4 209 256-521 38-246 (272)
80 3m19_A Variable lymphocyte rec 99.9 8.3E-23 2.9E-27 195.1 13.9 178 333-535 16-193 (251)
81 1p9a_G Platelet glycoprotein I 99.9 5.9E-22 2E-26 193.0 19.5 180 109-296 6-185 (290)
82 2xwt_C Thyrotropin receptor; s 99.9 4.7E-22 1.6E-26 188.5 14.4 178 41-224 32-218 (239)
83 3goz_A Leucine-rich repeat-con 99.9 4.4E-23 1.5E-27 208.5 6.0 252 44-296 2-297 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 9.4E-22 3.2E-26 186.4 14.5 195 65-292 32-235 (239)
85 4glp_A Monocyte differentiatio 99.9 1.8E-21 6.1E-26 192.2 16.3 227 64-296 64-307 (310)
86 3goz_A Leucine-rich repeat-con 99.9 1.3E-22 4.5E-27 204.9 7.0 64 449-512 225-299 (362)
87 2ca6_A RAN GTPase-activating p 99.9 5.4E-23 1.9E-27 210.0 3.8 240 56-296 24-316 (386)
88 4glp_A Monocyte differentiatio 99.9 1.6E-21 5.3E-26 192.6 13.7 226 41-273 65-308 (310)
89 2ast_B S-phase kinase-associat 99.9 6.8E-23 2.3E-27 205.3 3.6 248 66-324 49-311 (336)
90 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.6E-27 203.1 5.3 199 16-221 49-257 (336)
91 3m19_A Variable lymphocyte rec 99.9 1.6E-20 5.6E-25 179.2 18.4 177 115-296 16-192 (251)
92 2ca6_A RAN GTPase-activating p 99.8 1.4E-22 4.9E-27 206.8 3.2 235 41-275 33-319 (386)
93 1h6u_A Internalin H; cell adhe 99.8 2.9E-20 9.9E-25 182.9 19.4 193 61-296 38-230 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2.5E-20 8.5E-25 183.4 18.7 190 41-249 42-231 (308)
95 4ay9_X Follicle-stimulating ho 99.8 2.9E-20 9.8E-25 186.7 18.0 243 116-389 12-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 3.8E-20 1.3E-24 185.8 17.3 204 67-276 12-219 (350)
97 2v9t_B SLIT homolog 2 protein 99.8 1E-20 3.4E-25 176.3 10.2 119 426-549 57-175 (220)
98 2xot_A Amphoterin-induced prot 99.8 2.2E-20 7.7E-25 188.3 11.0 179 334-537 21-205 (361)
99 2o6s_A Variable lymphocyte rec 99.8 2.4E-19 8.4E-24 165.8 16.5 181 43-236 10-190 (208)
100 2o6s_A Variable lymphocyte rec 99.8 3E-19 1E-23 165.2 16.4 181 17-212 10-190 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 3.8E-20 1.3E-24 172.4 10.0 110 426-535 58-167 (220)
102 3e6j_A Variable lymphocyte rec 99.8 6E-19 2.1E-23 165.4 15.5 111 426-537 65-175 (229)
103 3cvr_A Invasion plasmid antige 99.8 1.4E-18 4.9E-23 183.2 17.6 186 65-281 60-252 (571)
104 2v9t_B SLIT homolog 2 protein 99.8 3E-18 1E-22 159.5 14.5 153 334-511 14-166 (220)
105 3cvr_A Invasion plasmid antige 99.8 7E-18 2.4E-22 177.9 17.6 186 41-257 60-252 (571)
106 2xot_A Amphoterin-induced prot 99.8 3.3E-18 1.1E-22 172.4 14.4 176 116-296 21-202 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-17 3.6E-22 155.8 15.3 151 117-272 15-166 (220)
108 1h6t_A Internalin B; cell adhe 99.7 1.4E-17 4.9E-22 162.1 16.1 152 327-512 64-215 (291)
109 1h6t_A Internalin B; cell adhe 99.7 2.7E-17 9.3E-22 160.2 16.6 188 66-272 26-213 (291)
110 3e6j_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 151.1 18.4 153 41-200 20-172 (229)
111 3sb4_A Hypothetical leucine ri 99.7 1.9E-18 6.5E-23 171.9 7.6 287 63-386 24-328 (329)
112 1m9s_A Internalin B; cell inva 99.7 7.7E-18 2.6E-22 179.8 11.9 167 41-224 44-210 (605)
113 1m9s_A Internalin B; cell inva 99.7 4E-17 1.4E-21 174.3 17.3 188 42-248 23-210 (605)
114 2wfh_A SLIT homolog 2 protein 99.7 7.9E-18 2.7E-22 153.0 9.4 121 425-551 31-151 (193)
115 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 149.0 12.8 132 382-538 11-143 (192)
116 3sb4_A Hypothetical leucine ri 99.7 7.3E-17 2.5E-21 160.5 13.1 257 41-312 50-327 (329)
117 4ezg_A Putative uncharacterize 99.7 7.3E-17 2.5E-21 147.6 11.7 151 330-510 43-194 (197)
118 1xeu_A Internalin C; cellular 99.7 5E-17 1.7E-21 155.7 10.6 166 41-224 20-185 (263)
119 4fs7_A Uncharacterized protein 99.7 1.8E-15 6.2E-20 154.3 22.3 152 228-388 155-306 (394)
120 4fdw_A Leucine rich hypothetic 99.7 2.6E-15 8.9E-20 152.3 23.0 262 41-318 114-382 (401)
121 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.1E-21 145.5 12.6 148 139-295 45-193 (197)
122 1xeu_A Internalin C; cellular 99.7 7.2E-17 2.5E-21 154.6 10.9 167 308-512 21-187 (263)
123 4fdw_A Leucine rich hypothetic 99.7 2.5E-15 8.7E-20 152.4 22.2 265 62-343 111-382 (401)
124 1dce_A Protein (RAB geranylger 99.7 4.1E-19 1.4E-23 188.5 -6.4 202 233-503 347-566 (567)
125 1w8a_A SLIT protein; signaling 99.7 1.7E-16 5.7E-21 144.3 11.7 129 334-487 11-140 (192)
126 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.2E-24 190.7 -11.7 203 61-289 346-566 (567)
127 4b8c_D Glucose-repressible alc 99.6 5.7E-17 2E-21 177.6 5.3 195 14-221 173-369 (727)
128 4fs7_A Uncharacterized protein 99.6 8.9E-15 3.1E-19 149.2 21.0 317 53-389 60-376 (394)
129 2o6r_A Variable lymphocyte rec 99.6 1.5E-15 5.3E-20 136.1 12.4 113 425-537 28-140 (177)
130 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.4E-20 133.9 10.3 86 426-511 72-161 (168)
131 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.8E-20 134.2 9.7 137 330-491 23-164 (168)
132 4b8c_D Glucose-repressible alc 99.6 2E-16 6.9E-21 173.3 2.5 117 85-207 220-336 (727)
133 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4E-19 132.0 13.6 87 426-512 55-141 (193)
134 2je0_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 130.0 9.2 128 355-506 17-149 (149)
135 3g39_A Variable lymphocyte rec 99.6 6E-15 2E-19 130.9 10.3 109 426-537 10-118 (170)
136 2je0_A Acidic leucine-rich nuc 99.6 8.1E-15 2.8E-19 127.3 10.5 127 64-195 17-148 (149)
137 2o6r_A Variable lymphocyte rec 99.5 4.5E-14 1.5E-18 126.5 13.4 131 115-250 9-139 (177)
138 2r9u_A Variable lymphocyte rec 99.5 1.9E-14 6.5E-19 128.1 10.4 107 428-537 15-121 (174)
139 1a9n_A U2A', U2A'; complex (nu 99.5 4.2E-14 1.4E-18 126.5 11.0 135 59-200 14-153 (176)
140 4gt6_A Cell surface protein; l 99.5 1.9E-12 6.6E-17 131.9 21.4 113 103-220 53-169 (394)
141 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 126.6 7.7 133 351-510 15-153 (176)
142 4gt6_A Cell surface protein; l 99.5 6.7E-12 2.3E-16 127.8 24.1 334 79-509 53-390 (394)
143 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.7E-20 139.1 -5.1 132 350-510 43-185 (198)
144 1ds9_A Outer arm dynein; leuci 99.4 2E-15 6.8E-20 138.1 -5.2 155 351-534 14-185 (198)
145 3g39_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 117.1 11.5 109 381-514 11-119 (170)
146 2ifg_A High affinity nerve gro 99.4 2.6E-13 8.7E-18 136.0 6.2 107 429-538 12-120 (347)
147 2r9u_A Variable lymphocyte rec 99.4 2.5E-12 8.6E-17 114.3 11.7 108 382-514 15-122 (174)
148 4h09_A Hypothetical leucine ri 99.3 3.4E-10 1.2E-14 114.6 23.1 285 63-387 45-341 (379)
149 4h09_A Hypothetical leucine ri 99.3 1.5E-09 5.2E-14 109.9 25.8 299 138-497 46-356 (379)
150 3un9_A NLR family member X1; l 99.3 2.6E-13 9.1E-18 136.1 -2.1 113 89-201 72-197 (372)
151 3un9_A NLR family member X1; l 99.2 1.1E-12 3.9E-17 131.5 -0.3 135 162-296 101-252 (372)
152 2ifg_A High affinity nerve gro 99.2 2.2E-11 7.5E-16 121.9 8.0 113 424-537 30-144 (347)
153 2ra8_A Uncharacterized protein 98.9 2.6E-09 9E-14 106.0 8.8 157 41-201 108-293 (362)
154 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.9E-13 101.4 7.3 135 135-272 169-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.3 1E-07 3.5E-12 85.2 1.5 65 446-510 90-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.2 5.6E-07 1.9E-11 80.4 3.7 118 154-271 28-163 (185)
157 3rw6_A Nuclear RNA export fact 98.2 2.3E-07 7.8E-12 87.1 1.0 80 446-527 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.2 1.3E-06 4.4E-11 82.0 5.8 79 423-503 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 7.9E-11 74.2 3.5 82 139-221 62-149 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.5E-06 5.1E-11 75.5 1.0 83 91-173 63-150 (176)
161 3rfe_A Platelet glycoprotein I 97.9 2.2E-06 7.4E-11 71.2 1.6 68 477-551 12-80 (130)
162 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.9E-08 54.6 5.9 56 429-486 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0011 3.7E-08 58.6 4.2 84 187-270 70-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0022 7.4E-08 56.7 4.3 111 184-294 38-168 (197)
165 2lz0_A Uncharacterized protein 66.0 6.8 0.00023 29.9 4.2 41 80-121 11-51 (100)
166 2lz0_A Uncharacterized protein 56.5 25 0.00086 26.6 5.9 46 437-483 8-53 (100)
167 2k1k_A Ephrin type-A receptor 22.1 40 0.0014 20.3 1.4 16 568-583 15-30 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-64 Score=561.41 Aligned_cols=508 Identities=32% Similarity=0.481 Sum_probs=450.6
Q ss_pred CCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEE
Q 038273 39 KFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 118 (623)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 118 (623)
+.+|++|++++|++.+.+|. ++++++|++|++++|.+++.+|..+ ..+++|++|++++|++++..|.. .+++|++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 34899999999999887777 8999999999999999987777664 89999999999999998776654 88999999
Q ss_pred EccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc
Q 038273 119 HVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS 198 (623)
Q Consensus 119 ~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 198 (623)
++++|.+.+.+|..++..+++|++|++++|.+++..|..++++++|++|++++|.+++.+|...+..+++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 99999999899999888778999999999999999999999999999999999999989999877899999999999999
Q ss_pred CccccccccccCC-CCCEEecccccCccccCccCcC--CCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccc
Q 038273 199 LHGQLFYKKIYLR-KLARLHLDANYCTGEIPKSLSN--CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPI 275 (623)
Q Consensus 199 l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 275 (623)
+.+..|..+..++ +|+.|++++|.+++..+..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+.+..
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 9988999998887 9999999999999888887776 889999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcc
Q 038273 276 PLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL 354 (623)
Q Consensus 276 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 354 (623)
|..+..+++|+.|++++|.+.+.+|... .+++|++|++++|.+.+.++.. +..+++|++|++++|++++..|.++..+
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 9999999999999999999998777655 6899999999999998888876 8999999999999999999999999999
Q ss_pred ccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCC-----------------------
Q 038273 355 TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDND----------------------- 411 (623)
Q Consensus 355 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~----------------------- 411 (623)
++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+....-.......
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999876543211000000
Q ss_pred -------------------CCCCCcc------ccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCC
Q 038273 412 -------------------GSSAPTR------YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP 466 (623)
Q Consensus 412 -------------------~~~~~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 466 (623)
....... .....+++|+.||+++|++++.+|..++.+++|+.|+|++|.+++.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 0000000 012346789999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCC
Q 038273 467 VSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAA 546 (623)
Q Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~ 546 (623)
..++++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|+.. ++.++...++.|||.+||.+++.|....
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS-SGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch-hhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence 999999999999999999999999999999999999999999999999864 7888899999999999999998899887
Q ss_pred CCCCCC
Q 038273 547 VPEASN 552 (623)
Q Consensus 547 ~~~~~~ 552 (623)
..+|+.
T Consensus 753 ~~~~~~ 758 (768)
T 3rgz_A 753 ADGYAH 758 (768)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 777773
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.5e-60 Score=524.92 Aligned_cols=517 Identities=29% Similarity=0.377 Sum_probs=376.7
Q ss_pred cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcc---cCCCCCCcEEEccCCCCCCcCChHHh
Q 038273 9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKF---LYNQHDLEYVDFSDSNLKGEFPNWLL 85 (623)
Q Consensus 9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~ls~n~l~~~~~~~~~ 85 (623)
.++++++|++||+++|.+.+..+... +..+.+|++|++++|++++..|.. +.++++|++|++++|.+++..+.
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 196 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSG-GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--- 196 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCS-CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHH-hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---
Confidence 68999999999999998875544331 123348999999999988777766 77888888888888888765553
Q ss_pred hCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCC
Q 038273 86 ENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK 165 (623)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 165 (623)
..+++|++|++++|.+++..+. +.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 5788888888888888776665 788888888888888888766766655 678888888888877666554 677788
Q ss_pred EEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCcc-CcCCCCCcEEECcC
Q 038273 166 FLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKS-LSNCSPLEGLYMSD 244 (623)
Q Consensus 166 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~ 244 (623)
+|++++|.+++.+|..++..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|.. +..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 88888887777777766554577888888887777777777777777888888777777666644 67777777777777
Q ss_pred CcCccccchhccCCC-CCCEEECccccccccccccccC--CCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccccc
Q 038273 245 NNLYGNIPAWLGNLS-SLNDIMMAINHLQGPIPLEFCQ--LNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYG 320 (623)
Q Consensus 245 n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~ 320 (623)
|.+++..|..+..++ +|++|++++|.+.+..+..+.. +++|+.|++++|.+.+.+|... .+++|+.|++++|.+.+
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 777767777666665 6777777777666655555544 5566666666666665555443 45666666666666655
Q ss_pred cCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccc
Q 038273 321 PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLD 400 (623)
Q Consensus 321 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 400 (623)
.++.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|..+.
T Consensus 433 ~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 433 TIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 55544 55666666666666666666666666666666666666666666666666666666666666666666665554
Q ss_pred ccc-ccC--CCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcc---------------------------------
Q 038273 401 NTS-LHN--NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQ--------------------------------- 444 (623)
Q Consensus 401 ~~~-l~~--~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------------------------- 444 (623)
... +.. ...+...... ......+++|+.|++++|.+++.+|..
T Consensus 512 ~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GCTTCCEEECCSSCCEEEC-CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred cCCCCCEEECCCCcccCcC-CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 332 111 1111111000 011123568888888888887666643
Q ss_pred -------------------------------------ccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccc
Q 038273 445 -------------------------------------IGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG 487 (623)
Q Consensus 445 -------------------------------------l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (623)
+..+++|+.|++++|.+++.+|..++++++|+.|+|++|++++
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 3446789999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCC
Q 038273 488 KIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 535 (623)
Q Consensus 488 ~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C 535 (623)
.+|+.+..+++|++|++++|++++.+|..+..+++|+.+++++|+...
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 999999999999999999999999999999999999999999998864
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-55 Score=486.48 Aligned_cols=534 Identities=21% Similarity=0.183 Sum_probs=330.8
Q ss_pred cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCC
Q 038273 9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENN 88 (623)
Q Consensus 9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l 88 (623)
.|.++++|++|++++|.+....+... ..+.+|++|++++|++++..+..++++++|++|++++|.++ .++...+.++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l 120 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELC--QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQ 120 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHH--HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHH--hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHcccc
Confidence 35555555555555555443322211 11225555555555555443444555555666666555555 3333333555
Q ss_pred CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhh-cCCCccEEecccCcccccCCcccCCC------
Q 038273 89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRNDFNGSIPSSIGDM------ 161 (623)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l------ 161 (623)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.. .+++|++|++++|.+++..|..+..+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 56666666665555555555555566666666665555322222211 13456666666665555544444333
Q ss_pred ---------------------CCCCEEEccCCcCCcccchHHhhCCC--CCCEEEcccCcCccccccccccCCCCCEEec
Q 038273 162 ---------------------NSLKFLDLSHNQLTGEIPEHLVIGCF--NLEYLVLSENSLHGQLFYKKIYLRKLARLHL 218 (623)
Q Consensus 162 ---------------------~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 218 (623)
++|+.|++++|.+. .++...+.+++ +|++|++++|.+.+..+..+..+++|+.|++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~-~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC-EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCccc-ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 33444444444444 22222223332 2666666666655555555555666666666
Q ss_pred ccccCccccCccCcCCCCCcEEECcCCcCcc-----ccc----hhccCCCCCCEEECccccccccccccccCCCCCcEEe
Q 038273 219 DANYCTGEIPKSLSNCSPLEGLYMSDNNLYG-----NIP----AWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILD 289 (623)
Q Consensus 219 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 289 (623)
++|.+.+..+..+..+++|+.|++++|...+ .+| ..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 6666655555555555666666655543221 111 2455666777777777777766666677777777777
Q ss_pred CcCcccee-eCC-CCC---CCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc-hhhhccccCcEEEcc
Q 038273 290 LSENNISG-TLP-SCS---SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRYLILA 363 (623)
Q Consensus 290 l~~n~~~~-~~~-~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 363 (623)
+++|.+.. .++ ..+ ..++|+.|++++|.+.+..+. +|..+++|+.|++++|.+.+.++ ..+..+++|++|+++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh-hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 77765321 111 111 124677777777777554443 37777888888888888765444 567777888888888
Q ss_pred cccccccCchhhcCCCCCCEEEccCCcCc--CCCCCcccccc-cc--CCCCCCCCCCCccccCCCCCCccEEEccCCccc
Q 038273 364 NNNLEGEVPNQLCRLKQLRLIDLSNNNLF--GQIPGCLDNTS-LH--NNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT 438 (623)
Q Consensus 364 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~-l~--~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 438 (623)
+|++.+..+..+..+++|+.|++++|.+. +..|..+.... +. ....+..... .......+++|++|++++|.++
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC-ChhhhccccccCEEeCCCCCcc
Confidence 88877666777777777777777777765 34454443322 11 1111111111 1112245679999999999998
Q ss_pred ccCC--------ccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCccc
Q 038273 439 GEIP--------PQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS 510 (623)
Q Consensus 439 ~~~~--------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 510 (623)
+..+ ..+..+++|+.|++++|.++.+.+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 6422 23788999999999999999776678999999999999999999877788899999999999999999
Q ss_pred ccCCCCcc-ccCCCCCccccCCCCCCCCCCCCCCC-CCCCCCCCc
Q 038273 511 GKIPEWTA-QFTTFKEDSYEGNPLLCGKPLPDCDV-AAVPEASNE 553 (623)
Q Consensus 511 ~~~~~~~~-~~~~l~~l~l~~Np~~C~~~l~~C~~-~~~~~~~~~ 553 (623)
+..+..+. .+++|+.+++++|||.| +|+. .|+..|...
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c-----~c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDC-----TCESIAWFVNWINE 637 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCB-----CCCCCSSEECCSSC
T ss_pred ccChhHhcccccccCEEEccCCCccc-----CCccHHHHHHHHHh
Confidence 98887776 68999999999999999 7775 777777643
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-55 Score=478.30 Aligned_cols=501 Identities=17% Similarity=0.178 Sum_probs=408.8
Q ss_pred CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273 15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL 94 (623)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (623)
++++||+++|.++...+.. +..+.+|++|++++|++.+..|.+|.++++|++|++++|.+++..|.. +.++++|++|
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L 110 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTT--FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHL 110 (606)
T ss_dssp TCCEEECTTCCCSEECTTT--STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEE
T ss_pred cCcEEEccCCccCcCChhH--hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEe
Confidence 6888888888877654433 233347888888888888777888888888888888888887444444 5788888888
Q ss_pred EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCC--EEEccCC
Q 038273 95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK--FLDLSHN 172 (623)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n 172 (623)
++++|++++..+..+.++++|++|++++|.+.+..+..... +++|++|++++|.+++..+..++.+++|+ .|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 88888888776777888888888888888887422222333 67888888888888877777788888888 7888888
Q ss_pred cCCcccchHHhhCCCCCCEEEcccCcCc--------------------------cccccccccCC--CCCEEecccccCc
Q 038273 173 QLTGEIPEHLVIGCFNLEYLVLSENSLH--------------------------GQLFYKKIYLR--KLARLHLDANYCT 224 (623)
Q Consensus 173 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~--------------------------~~~~~~~~~~~--~L~~L~l~~n~~~ 224 (623)
.++ .++...+ ...+|++|++++|... ...+..+..+. +|+.|++++|.++
T Consensus 190 ~l~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 190 DIA-GIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CCC-EECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred ccC-ccChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 887 5555554 3467788887766411 01111222222 7889999999999
Q ss_pred cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCC--C
Q 038273 225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--C 302 (623)
Q Consensus 225 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~ 302 (623)
+..+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.++. .
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 888888999999999999999998 6778899999999999999999988888899999999999999998866655 3
Q ss_pred CCCCcccEEEccCccccccC--CCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCch-hhcCCC
Q 038273 303 SSHSTIQQVHLSKNMLYGPL--KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN-QLCRLK 379 (623)
Q Consensus 303 ~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~ 379 (623)
..+++|++|++++|.+.+.. +. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+. .+..++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 47899999999999986654 33 388899999999999999988888999999999999999999876554 488999
Q ss_pred CCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc---CCccccccccCCeeeC
Q 038273 380 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE---IPPQIGKLTSIRALNF 456 (623)
Q Consensus 380 ~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L 456 (623)
+|+.|++++|.+.+..|..+.. +++|++|++++|.+++. .+..+..+++|+.|++
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~----------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDG----------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTT----------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred cCCEEECCCCccCCcCHHHHhC----------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 9999999999998877776654 45999999999999862 3467899999999999
Q ss_pred CCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCC
Q 038273 457 SHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG 536 (623)
Q Consensus 457 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~ 536 (623)
++|.+++..|..|..+++|++|+|++|++++..|+.+..++.| +|++++|++++..|..+..+++|+.+++++||+.|
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c- 561 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC- 561 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC-
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc-
Confidence 9999999999999999999999999999999999999999999 99999999999999888899999999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 038273 537 KPLPDCDVAAVPEAS 551 (623)
Q Consensus 537 ~~l~~C~~~~~~~~~ 551 (623)
+|...|+..|.
T Consensus 562 ----~c~~~~~~~w~ 572 (606)
T 3t6q_A 562 ----TCSNIYFLEWY 572 (606)
T ss_dssp ----SGGGHHHHHHH
T ss_pred ----cCCcHHHHHHH
Confidence 66655554443
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5e-55 Score=491.12 Aligned_cols=488 Identities=19% Similarity=0.149 Sum_probs=367.8
Q ss_pred CCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCC-CcccCCCCCCcEEEccCCCCCCcCChHHhhCCCC
Q 038273 12 NNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATF-PKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTN 90 (623)
Q Consensus 12 ~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~ 90 (623)
..++|++|||++|.+....+.. +....+|++|++++|...+.+ |.++.++++|++|++++|.+++..|.. |.++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~--~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASS--FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSS--CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS-SCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhH--CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH-ccCCcc
Confidence 4468888888888876554433 233338888888888655444 777888888888888888887444544 478888
Q ss_pred CCEEEccCCcCcCcCCCC--CCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCC--CCCCE
Q 038273 91 LNTLVLRNNSLSGPFRMP--IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM--NSLKF 166 (623)
Q Consensus 91 L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~ 166 (623)
|++|++++|.+++..+.. +.++++|++|++++|.+.+..+...+..+++|++|++++|.+++..+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 888888888887755544 78888888888888888754444444447788888888888887777777766 78888
Q ss_pred EEccCCcCCcccchHHhhCCC------CCCEEEcccCcCccccccccc--------------------------------
Q 038273 167 LDLSHNQLTGEIPEHLVIGCF------NLEYLVLSENSLHGQLFYKKI-------------------------------- 208 (623)
Q Consensus 167 L~l~~n~l~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~-------------------------------- 208 (623)
|++++|.+.+..+..+ ..+. .|++|++++|.+.+..+..+.
T Consensus 179 L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred EECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 8888888775555433 2333 388888888866543333222
Q ss_pred ----c--CCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCC
Q 038273 209 ----Y--LRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQL 282 (623)
Q Consensus 209 ----~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 282 (623)
. .++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 1 2567888888888877777778888888888888888877777778888888888888888877777778888
Q ss_pred CCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEE
Q 038273 283 NYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLI 361 (623)
Q Consensus 283 ~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 361 (623)
++|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+ +..+++|+.|++++|+++. +|.. ..+++.|+
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ 407 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIH 407 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCccc-cccc---ccccceee
Confidence 888888888887765544433 57788888888887743 2336778888888888773 3332 45678888
Q ss_pred cccccccccC-chhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccc--
Q 038273 362 LANNNLEGEV-PNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT-- 438 (623)
Q Consensus 362 L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-- 438 (623)
+++|++.+.. +..+..+++|+.|++++|++++..+.... ..+++|+.|++++|.++
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---------------------SENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------------CSCTTCCBCEEESCCCSSS
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------------ccCCccccccCCCCccccc
Confidence 8888887543 23456888999999999988754432111 12569999999999997
Q ss_pred ---ccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCC
Q 038273 439 ---GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515 (623)
Q Consensus 439 ---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 515 (623)
+..+..+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 34556788999999999999999999999999999999999999999987777665 8999999999999999997
Q ss_pred CccccCCCCCccccCCCCCCCCCC
Q 038273 516 WTAQFTTFKEDSYEGNPLLCGKPL 539 (623)
Q Consensus 516 ~~~~~~~l~~l~l~~Np~~C~~~l 539 (623)
.+ .+++.+++++||+.|+|++
T Consensus 545 ~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 545 VF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CC---SSCCEEEEEEECCCCSSSC
T ss_pred Hh---CCcCEEEecCCCccccccc
Confidence 65 5888999999999997764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-54 Score=471.67 Aligned_cols=496 Identities=19% Similarity=0.198 Sum_probs=379.8
Q ss_pred CCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCE
Q 038273 14 SKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNT 93 (623)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 93 (623)
+++++|++++|.+....+.. +....+|++|++++|++++..|.++.++++|++|++++|.+++..|.. +.++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYS--FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhh--ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCE
Confidence 67888888888876554433 223347888888888887777777888888888888888887443544 478888888
Q ss_pred EEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCCC----EEE
Q 038273 94 LVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK----FLD 168 (623)
Q Consensus 94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~----~L~ 168 (623)
|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..++.+++|+ +|+
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 8888888877777778888888888888888774 46766665 67888888888888877777776665554 788
Q ss_pred ccCCcCCcccchHHhhCCCCCCEEEcccCcCc-cccccccccCCCCCEEec-----------------------------
Q 038273 169 LSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH-GQLFYKKIYLRKLARLHL----------------------------- 218 (623)
Q Consensus 169 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l----------------------------- 218 (623)
+++|.++ .++...+... +|++|++++|.+. ...+..+.+++.|+.+++
T Consensus 188 l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 188 MSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp CTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred ccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 8888887 6777666544 7888888888765 234444555555555444
Q ss_pred ----ccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCcc
Q 038273 219 ----DANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENN 294 (623)
Q Consensus 219 ----~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 294 (623)
..+.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|.
T Consensus 266 l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCS
T ss_pred eeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCc
Confidence 34445555554 6777888888888888763 44 677788888888888888 4555 44 78888888888886
Q ss_pred ceeeCCCCCCCCcccEEEccCccccccC--CCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCc
Q 038273 295 ISGTLPSCSSHSTIQQVHLSKNMLYGPL--KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVP 372 (623)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 372 (623)
..+.. ....+++|++|++++|.+.+.. +. .+..+++|++|++++|.+.+ .|..+..+++|+.|++++|++.+..+
T Consensus 340 ~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 340 GSISF-KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp SCEEC-CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred Cccch-hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence 55444 3446788888888888775542 33 26677888888888888774 45667778888888888888876666
Q ss_pred -hhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccc-cCCcccccccc
Q 038273 373 -NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTS 450 (623)
Q Consensus 373 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~ 450 (623)
..+..+++|+.|++++|.+.+..|..+.. +++|++|++++|.+++ ..|..+..+++
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------------------LTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTT----------------------CTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcC----------------------CCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 57778888888888888887777666554 4599999999999997 47889999999
Q ss_pred CCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccC-CCCCcccc
Q 038273 451 IRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFT-TFKEDSYE 529 (623)
Q Consensus 451 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~l~l~ 529 (623)
|+.|++++|.+++..|..|.++++|++|++++|++++..|..+..+++|++|++++|+++. +|..+..++ +|+.++++
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999994 555577886 59999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 038273 530 GNPLLCGKPLPDCDVAAVPEASN 552 (623)
Q Consensus 530 ~Np~~C~~~l~~C~~~~~~~~~~ 552 (623)
+||+.| +|+..|+..|..
T Consensus 554 ~N~~~c-----~c~~~~~~~~l~ 571 (606)
T 3vq2_A 554 NNSVAC-----ICEHQKFLQWVK 571 (606)
T ss_dssp SCCCCC-----SSTTHHHHTTTT
T ss_pred CCCccc-----CCccHHHHHHHH
Confidence 999999 677666666653
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.3e-52 Score=456.16 Aligned_cols=517 Identities=20% Similarity=0.173 Sum_probs=408.3
Q ss_pred CCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCE
Q 038273 14 SKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNT 93 (623)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 93 (623)
+++++|++++|.+....+.. +..+.+|++|++++|.+.+..|.+++++++|++|++++|.++ .+|...|.++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGG--GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHH--HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCE
Confidence 68999999999887654432 223348999999999998888888999999999999999988 677766688999999
Q ss_pred EEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccC--CCCCCCEEEccC
Q 038273 94 LVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG--DMNSLKFLDLSH 171 (623)
Q Consensus 94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~ 171 (623)
|++++|++++..+..+.++++|++|++++|.+.+..|..+.. +++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999999998887888999999999999999988555554444 78999999999998876666554 568899999999
Q ss_pred CcCCcccchHHhhCC---------------------------CCCCEEEcccCcCccccccccccCCC--CCEEeccccc
Q 038273 172 NQLTGEIPEHLVIGC---------------------------FNLEYLVLSENSLHGQLFYKKIYLRK--LARLHLDANY 222 (623)
Q Consensus 172 n~l~~~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~ 222 (623)
|.++ .++...+..+ ++|++|++++|.+.+..+..+..++. |+.|++++|.
T Consensus 181 n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 181 NQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCC-CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred Cccc-ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 9888 4444333333 56778888888888777777777754 9999999999
Q ss_pred CccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccc---------cccccccCCCCCcEEeCcCc
Q 038273 223 CTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG---------PIPLEFCQLNYLEILDLSEN 293 (623)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---------~~~~~~~~l~~L~~L~l~~n 293 (623)
+++..+..|+.+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .....+..+++|+.|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 988888888999999999999999988888889999999999998765432 12236778899999999999
Q ss_pred cceeeCCCCC-CCCcccEEEccCccccc-cCCCCCccCC--CceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccc
Q 038273 294 NISGTLPSCS-SHSTIQQVHLSKNMLYG-PLKYGTFFNR--SSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG 369 (623)
Q Consensus 294 ~~~~~~~~~~-~~~~L~~L~l~~n~l~~-~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 369 (623)
.+.+..+..+ .+++|++|++++|.+.. .++...|..+ ++|+.|++++|++++..|..+..+++|+.|++++|.+.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 9987666544 68899999999987532 2333334433 589999999999998889999999999999999999987
Q ss_pred cCc-hhhcCCCCCCEEEccCCcCcCCCCCcccccc-ccC--CCCCCCCC-CCccccCCCCCCccEEEccCCcccccCCcc
Q 038273 370 EVP-NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTS-LHN--NGDNDGSS-APTRYKGKPLNKMYGVDLSCNKLTGEIPPQ 444 (623)
Q Consensus 370 ~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~--~~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 444 (623)
.++ ..+..+++|++|++++|++.+..+..+...+ +.. ...+.... .........+++|+.|++++|.+++..+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 655 7899999999999999999877776665433 111 11111110 111122345788999999999999877888
Q ss_pred ccccccCCeeeCCCCcccccCC--------ccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCC
Q 038273 445 IGKLTSIRALNFSHNNLTGVIP--------VSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEW 516 (623)
Q Consensus 445 l~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 516 (623)
+..+++|++|++++|.+++..+ ..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++++..+..
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence 9999999999999999886532 24788899999999999999665667899999999999999999887877
Q ss_pred ccccCCCCCccccCCCCCC
Q 038273 517 TAQFTTFKEDSYEGNPLLC 535 (623)
Q Consensus 517 ~~~~~~l~~l~l~~Np~~C 535 (623)
+..+++|+.+++++|...-
T Consensus 580 ~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp TTTCTTCCEEECTTSCCCB
T ss_pred hCCCCCCCEEECCCCcCCc
Confidence 8888999999999987643
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.3e-52 Score=451.45 Aligned_cols=478 Identities=20% Similarity=0.197 Sum_probs=408.9
Q ss_pred CccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhh
Q 038273 7 LEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLE 86 (623)
Q Consensus 7 ~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 86 (623)
...|.++++|++|++++|.+....+.. +..+.+|++|++++|++.+..|..++++++|++|++++|.++ .++...+.
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~ 126 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLH 126 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTT--TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCT
T ss_pred hhHhccCccceEEECCCCccceeChhh--ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhc
Confidence 357899999999999999987655443 234449999999999999888999999999999999999998 45444468
Q ss_pred CCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc--EEecccCcccccCCcccCCCCCC
Q 038273 87 NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV--YLNLSRNDFNGSIPSSIGDMNSL 164 (623)
Q Consensus 87 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L 164 (623)
++++|++|++++|++++.....+..+++|++|++++|.+.+..|..+. .+++|+ .|++++|.+++..|..+.. .+|
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L 204 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDS-AVF 204 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTT-CEE
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhh-ccc
Confidence 999999999999999886655666699999999999999944444444 478999 8999999999877776654 689
Q ss_pred CEEEccCCcCC-------------------------cccchHHhhCCC--CCCEEEcccCcCccccccccccCCCCCEEe
Q 038273 165 KFLDLSHNQLT-------------------------GEIPEHLVIGCF--NLEYLVLSENSLHGQLFYKKIYLRKLARLH 217 (623)
Q Consensus 165 ~~L~l~~n~l~-------------------------~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 217 (623)
+.|++++|... ..++...+.++. +|++|++++|.+.+..+..+..+++|+.|+
T Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 99999887411 022333333333 789999999999988888899999999999
Q ss_pred cccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc-ccccCCCCCcEEeCcCccce
Q 038273 218 LDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP-LEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~ 296 (623)
+++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 285 l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred ccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 9999998 678889999999999999999998888999999999999999999885544 45889999999999999998
Q ss_pred eeC--C-CCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCch-hhhccccCcEEEcccccccccCc
Q 038273 297 GTL--P-SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-WIERLTRLRYLILANNNLEGEVP 372 (623)
Q Consensus 297 ~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 372 (623)
+.. + ....+++|++|++++|.+.+..+.. |..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 664 3 3457899999999999997665554 88999999999999999876554 48899999999999999998889
Q ss_pred hhhcCCCCCCEEEccCCcCcCCC-C--CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccc
Q 038273 373 NQLCRLKQLRLIDLSNNNLFGQI-P--GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLT 449 (623)
Q Consensus 373 ~~~~~l~~L~~L~l~~n~l~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 449 (623)
..+..+++|++|++++|++.+.. + ..+. .+++|+.|++++|.+++..|..+..++
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ----------------------TLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------------------GCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhc----------------------cCCCccEEECCCCccCccChhhhcccc
Confidence 99999999999999999997632 1 2233 356999999999999999999999999
Q ss_pred cCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273 450 SIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 514 (623)
+|+.|++++|++++..|+.+.++++| .|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999 99999999999999999999999999999999987655
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-50 Score=440.83 Aligned_cols=480 Identities=18% Similarity=0.153 Sum_probs=410.7
Q ss_pred CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273 15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL 94 (623)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (623)
.-++++.+++.++..... ++ .++++|++++|++.+..+..+.++++|++|++++|.++ .++...|.++++|++|
T Consensus 12 ~~~~~~c~~~~l~~ip~~----~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDD----IP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNL 85 (606)
T ss_dssp TTTEEECTTSCCSSCCTT----SC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred CCCceEccCCCcccCCCC----CC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEe
Confidence 456899998887654332 22 38999999999999888889999999999999999999 4555556899999999
Q ss_pred EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccc-cCCcccCCCCCCCEEEccCCc
Q 038273 95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLKFLDLSHNQ 173 (623)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~ 173 (623)
++++|++++..|..|.++++|++|++++|.+.+..+..+. .+++|++|++++|.+++ .+|..++++++|++|++++|.
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 9999999998899999999999999999999843334444 48899999999999986 469999999999999999999
Q ss_pred CCcccchHHhhCCCCC----CEEEcccCcCccccccccccCCCCCEEecccccCc-cccCccCcCCCCCcEEEC------
Q 038273 174 LTGEIPEHLVIGCFNL----EYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT-GEIPKSLSNCSPLEGLYM------ 242 (623)
Q Consensus 174 l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L------ 242 (623)
++ .++...+..+.+| ++|++++|.+.+..+..+... +|+.|++++|.+. +..+..+..+++|+.+++
T Consensus 165 l~-~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 165 IQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CC-EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred ce-ecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 98 5554444555544 489999999987766666555 8999999999876 345566677777776665
Q ss_pred ---------------------------cCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccc
Q 038273 243 ---------------------------SDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295 (623)
Q Consensus 243 ---------------------------~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 295 (623)
..+.+.+..|. +..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+
T Consensus 243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC
T ss_pred cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC
Confidence 55566666666 8889999999999999974 44 788999999999999999
Q ss_pred eeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC--CchhhhccccCcEEEcccccccccCch
Q 038273 296 SGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN--IPYWIERLTRLRYLILANNNLEGEVPN 373 (623)
Q Consensus 296 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~ 373 (623)
+.+|.. .+++|++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.+ .|.
T Consensus 320 -~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~ 393 (606)
T 3vq2_A 320 -KQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA 393 (606)
T ss_dssp -SSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred -cccccC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence 577866 9999999999999665544 377899999999999999865 37889999999999999999985 557
Q ss_pred hhcCCCCCCEEEccCCcCcCCCC-CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCC
Q 038273 374 QLCRLKQLRLIDLSNNNLFGQIP-GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIR 452 (623)
Q Consensus 374 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 452 (623)
.+..+++|+.|++++|++.+..+ ..+.. +++|+.|++++|.+++..|..+..+++|+
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLS----------------------LEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTT----------------------CTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhc----------------------cccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 89999999999999999987766 44443 45999999999999999999999999999
Q ss_pred eeeCCCCcccc-cCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCC
Q 038273 453 ALNFSHNNLTG-VIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGN 531 (623)
Q Consensus 453 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~N 531 (623)
+|++++|.+++ ..|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.+++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 99999999997 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 038273 532 PLL 534 (623)
Q Consensus 532 p~~ 534 (623)
+..
T Consensus 532 ~l~ 534 (606)
T 3vq2_A 532 RIE 534 (606)
T ss_dssp CCC
T ss_pred cCc
Confidence 875
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-50 Score=450.87 Aligned_cols=476 Identities=21% Similarity=0.160 Sum_probs=400.3
Q ss_pred CccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChH-Hh
Q 038273 7 LEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNW-LL 85 (623)
Q Consensus 7 ~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~ 85 (623)
..+|.++++|++|||++|......++. .+..+.+|++|+|++|.+.+..|..++++++|++|++++|.+++.+|.. .+
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 457999999999999999655443221 2344459999999999999889999999999999999999998766553 45
Q ss_pred hCCCCCCEEEccCCcCcCcCC-CCCCCCCCCCEEEccCCCCCCCCChhhhhc-CCCccEEecccCcccccCCcccCCCCC
Q 038273 86 ENNTNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLHVSKNFFQGNIPLEIGVY-FPRLVYLNLSRNDFNGSIPSSIGDMNS 163 (623)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~ 163 (623)
.++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+... .++|+.|++++|.+.+..|..+..+++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 899999999999999988655 468999999999999999997777776652 169999999999999888887777766
Q ss_pred ------CCEEEccCCcCCcccchHHhh-----------------------------------C--CCCCCEEEcccCcCc
Q 038273 164 ------LKFLDLSHNQLTGEIPEHLVI-----------------------------------G--CFNLEYLVLSENSLH 200 (623)
Q Consensus 164 ------L~~L~l~~n~l~~~~~~~~~~-----------------------------------~--l~~L~~L~l~~n~l~ 200 (623)
|++|++++|.+++.++..+.. + .++|++|++++|.+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence 999999999877555443322 1 268999999999999
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 280 (623)
+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 98899999999999999999999998899999999999999999999988899999999999999999999988888899
Q ss_pred CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc-hhhhccccCcE
Q 038273 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRY 359 (623)
Q Consensus 281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 359 (623)
.+++|+.|++++|.+.+ ++ .+++|+.+++++|.+. .++.. ..+++.|++++|++.+... ..+..+++|+.
T Consensus 360 ~l~~L~~L~Ls~N~l~~-i~---~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~ 430 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTT-IH---FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQI 430 (844)
T ss_dssp SCCCCCEEEEETCCSCC-CS---SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCc-cc---CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccce
Confidence 99999999999999873 22 3789999999999985 44432 4689999999999997533 34568999999
Q ss_pred EEcccccccccCch-hhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccc
Q 038273 360 LILANNNLEGEVPN-QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT 438 (623)
Q Consensus 360 L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 438 (623)
|++++|++.+..+. .+..+++|+.|++++|.+....+..... .....+++|+.|++++|.++
T Consensus 431 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW-----------------DVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS-----------------SCSSCBCCEECCCCCHHHHT
T ss_pred eeCCCCcccccccccccccCCccccccCCCCccccccccccch-----------------hhhcCcccccEEECCCCccc
Confidence 99999999865433 4567899999999999997544321110 01123579999999999999
Q ss_pred ccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273 439 GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 439 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 514 (623)
+..|..+..+++|+.|+|++|.+++..+..+. ++|+.|+|++|++++..|+.+ .+|+.+++++|++.+..+
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 99999999999999999999999988887776 899999999999999888775 478999999999987554
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-49 Score=429.49 Aligned_cols=487 Identities=19% Similarity=0.167 Sum_probs=335.0
Q ss_pred CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273 15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL 94 (623)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (623)
++++||+++|.+....+.. +..+.+|++|++++|++.+..+..+.++++|++|++++|.++ .++...|.++++|++|
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCCEEECCSCCCCEECTTT--TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred cccEEEccCCccCccChhH--hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence 4555555555544332221 122225555555555555444455555555555555555555 3333333555555555
Q ss_pred EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCC----CEEEc
Q 038273 95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL----KFLDL 169 (623)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l 169 (623)
++++|++++..+..+.++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..++.+++| +.|++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 555555554444445555555555555555543 23444443 4455555555555554444445444444 45555
Q ss_pred cCCcCCcccchHHhhCCCCCCEEEcccCcCcc-ccccccccCCCCCEEeccccc------CccccCccCcCCCC--CcEE
Q 038273 170 SHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG-QLFYKKIYLRKLARLHLDANY------CTGEIPKSLSNCSP--LEGL 240 (623)
Q Consensus 170 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~------~~~~~~~~~~~l~~--L~~L 240 (623)
++|.+. .++...+... +|++|++++|.... ..+..+..+++++...+.... +.......+..+++ ++.+
T Consensus 185 ~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 185 SLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp TTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 555555 3333333322 45555555543221 122223333444333332211 11111222333332 4566
Q ss_pred ECcCC-cCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCcccc
Q 038273 241 YMSDN-NLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLY 319 (623)
Q Consensus 241 ~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 319 (623)
+++++ .+.+..+..+..+++|++|++++|.+. ..|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccc
Confidence 66666 666778888999999999999999998 567777788 9999999999987 5554 46889999999999986
Q ss_pred ccCCCCCccCCCceeEEeCCCCcCCCCC--chhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCC-
Q 038273 320 GPLKYGTFFNRSSIVTLDLSYNSFSGNI--PYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP- 396 (623)
Q Consensus 320 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 396 (623)
+..+. ..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+..+
T Consensus 339 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 339 NAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred ccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence 65553 67899999999999998654 78899999999999999999865544 9999999999999999987655
Q ss_pred CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCccc-ccCCccCCCCCCC
Q 038273 397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT-GVIPVSFSNLKQV 475 (623)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 475 (623)
..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|
T Consensus 415 ~~~~----------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 415 SVFL----------------------SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp CTTT----------------------TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred hhhh----------------------cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 2333 3569999999999999999999999999999999999997 5788999999999
Q ss_pred cEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 476 ESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 476 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.+++++||+.|+|
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 99999999999998999999999999999999999998888999999999999999999944
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-48 Score=416.06 Aligned_cols=474 Identities=18% Similarity=0.203 Sum_probs=392.1
Q ss_pred ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhC
Q 038273 8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN 87 (623)
Q Consensus 8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 87 (623)
..|.++++|++||+++|.+....+.. +..+.+|++|++++|.+.+..|..+..+++|++|++++|.++ .++...+.+
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~ 122 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH 122 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTT
T ss_pred hHhhCCCCceEEECCCCcCCccCccc--ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccc
Confidence 47899999999999999887654433 234459999999999999888899999999999999999998 566544689
Q ss_pred CCCCCEEEccCCcCcCc-CCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc----cEEecccCcccccCCcccCCCC
Q 038273 88 NTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL----VYLNLSRNDFNGSIPSSIGDMN 162 (623)
Q Consensus 88 l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~ 162 (623)
+++|++|++++|.+++. .|..+.++++|++|++++|.+.+..|..+.. +++| +.|++++|.+++..+..+...
T Consensus 123 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~- 200 (570)
T 2z63_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200 (570)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-
T ss_pred cccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-
Confidence 99999999999999873 5888999999999999999998544444544 5677 899999999998888888766
Q ss_pred CCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcC------ccccccccccCCC--CCEEecccc-cCccccCccCcC
Q 038273 163 SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL------HGQLFYKKIYLRK--LARLHLDAN-YCTGEIPKSLSN 233 (623)
Q Consensus 163 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~~~~~~~--L~~L~l~~n-~~~~~~~~~~~~ 233 (623)
+|+.|++++|..........+.++..++.+.+....+ .......+..+.+ ++.++++++ .+.+..+..+..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 8999999998654333344456788888776654322 1122233333333 456777776 667778888999
Q ss_pred CCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEc
Q 038273 234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHL 313 (623)
Q Consensus 234 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 313 (623)
+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. ..|. ..+++|+.|++++|.+.+..+. ..+++|++|++
T Consensus 281 l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l 354 (570)
T 2z63_A 281 LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDL 354 (570)
T ss_dssp GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEEC
T ss_pred cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeC
Confidence 999999999999988 577778888 9999999999998 4443 4788999999999998766655 67899999999
Q ss_pred cCccccccCC-CCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCc-hhhcCCCCCCEEEccCCcC
Q 038273 314 SKNMLYGPLK-YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVP-NQLCRLKQLRLIDLSNNNL 391 (623)
Q Consensus 314 ~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l 391 (623)
++|.+.+... ...+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 9999865421 12377889999999999999865554 8889999999999999987655 5788999999999999999
Q ss_pred cCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccc-ccCCccccccccCCeeeCCCCcccccCCccCC
Q 038273 392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT-GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS 470 (623)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 470 (623)
.+..|..+.. +++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..|.
T Consensus 434 ~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 434 RVAFNGIFNG----------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp EECCTTTTTT----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccchhhhhc----------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 8887776654 459999999999998 57889999999999999999999999899999
Q ss_pred CCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCC
Q 038273 471 NLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPE 515 (623)
Q Consensus 471 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 515 (623)
.+++|++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999999988888899999999999999999988775
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-48 Score=415.29 Aligned_cols=466 Identities=19% Similarity=0.176 Sum_probs=297.8
Q ss_pred CCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCE
Q 038273 14 SKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNT 93 (623)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 93 (623)
++|++|++++|.+....+.. +..+.+|++|++++|++.+..|.++.++++|++|++++|.++ .++...+.++++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGD--LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSST--TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhh--hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcE
Confidence 45666666666655443322 122236666666666666555566666666666666666666 344443466666666
Q ss_pred EEccCCcCcCc-CCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCC
Q 038273 94 LVLRNNSLSGP-FRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHN 172 (623)
Q Consensus 94 L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 172 (623)
|++++|.+++. .+..+.++++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..+.++++|++|+++.|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 66666666542 34456666666666666665333555433333556666666666666666666666666666666666
Q ss_pred cCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccc
Q 038273 173 QLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIP 252 (623)
Q Consensus 173 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 252 (623)
.+. .++...+..+++|++|++++|.+.+..... ......+++|+.|++++|.+++..+
T Consensus 183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSP---------------------LPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp BST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC---------------------CSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred ccc-ccchhhHhhcccccEEEccCCccccccccc---------------------cchhhhhhcccceeccccccchhHH
Confidence 655 555555555666666666666655421100 0111233445555555554443222
Q ss_pred h----hccCCCCCCEEECccccccccc------cccccCCCCCcEEeCcCccceeeCCC--C----CCCCcccEEEccCc
Q 038273 253 A----WLGNLSSLNDIMMAINHLQGPI------PLEFCQLNYLEILDLSENNISGTLPS--C----SSHSTIQQVHLSKN 316 (623)
Q Consensus 253 ~----~l~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~--~----~~~~~L~~L~l~~n 316 (623)
. .+..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+...... . ....+|+.+++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 1 2233445555555555444321 12234556666666666554321100 0 02356788888888
Q ss_pred cccccCCCCCccCCCceeEEeCCCCcCCCCCch---hhhccccCcEEEcccccccccCc--hhhcCCCCCCEEEccCCcC
Q 038273 317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY---WIERLTRLRYLILANNNLEGEVP--NQLCRLKQLRLIDLSNNNL 391 (623)
Q Consensus 317 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l 391 (623)
.+ ..+|...+..+++|++|++++|++.+..|. .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++
T Consensus 321 ~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 321 KV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp CC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred cc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 77 356655445788899999999988876543 36678899999999999875432 4578889999999999988
Q ss_pred cCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCC
Q 038273 392 FGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN 471 (623)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (623)
+ .+|..+.. +++|++|++++|.++ .+|..+. ++|++|++++|.+++.. ..
T Consensus 400 ~-~lp~~~~~----------------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~ 449 (549)
T 2z81_A 400 H-PMPDSCQW----------------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LF 449 (549)
T ss_dssp C-CCCSCCCC----------------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CC
T ss_pred c-cCChhhcc----------------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----cc
Confidence 7 34543332 358999999999987 4444332 58999999999998643 57
Q ss_pred CCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 472 LKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 472 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+++|++|+|++|+++ .+|+ ...+++|++|++++|++++..|..+..+++|+.+++++||+.|+|
T Consensus 450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 889999999999998 5665 467899999999999999998888889999999999999999944
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-46 Score=400.62 Aligned_cols=449 Identities=18% Similarity=0.177 Sum_probs=344.5
Q ss_pred ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCC-cCChHHhh
Q 038273 8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG-EFPNWLLE 86 (623)
Q Consensus 8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~ 86 (623)
..|.++++|++|++++|.+....+.. +....+|++|++++|++++..|..++++++|++|++++|.+++ ..|.. +.
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~ 120 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FP 120 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS-CT
T ss_pred hhhhcCCcccEEECCCCCcCccChhh--ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh-hh
Confidence 46899999999999999988665443 2334499999999999998888889999999999999999984 23443 58
Q ss_pred CCCCCCEEEccCCc-CcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCC
Q 038273 87 NNTNLNTLVLRNNS-LSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLK 165 (623)
Q Consensus 87 ~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 165 (623)
++++|++|++++|. +....+..+.++++|++|++++|.+.+.+|..+.. +++|++|+++.|.+.......+..+++|+
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc-cccCceEecccCcccccchhhHhhccccc
Confidence 99999999999998 44555578999999999999999999778877776 78999999999998744333346799999
Q ss_pred EEEccCCcCCccc--chHHhhCCCCCCEEEcccCcCcccccc----ccccCCCCCEEecccccCcccc------CccCcC
Q 038273 166 FLDLSHNQLTGEI--PEHLVIGCFNLEYLVLSENSLHGQLFY----KKIYLRKLARLHLDANYCTGEI------PKSLSN 233 (623)
Q Consensus 166 ~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~------~~~~~~ 233 (623)
+|++++|++++.. +..+...+++|++|++++|.+.+..+. .+..+++|+.+++++|.+.+.. ...+..
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 9999999998421 233345688999999999988764433 3456788999999988766431 123456
Q ss_pred CCCCcEEECcCCcCccc-----cchhccCCCCCCEEECccccccccccccc-cCCCCCcEEeCcCccceeeCCCCCCCCc
Q 038273 234 CSPLEGLYMSDNNLYGN-----IPAWLGNLSSLNDIMMAINHLQGPIPLEF-CQLNYLEILDLSENNISGTLPSCSSHST 307 (623)
Q Consensus 234 l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 307 (623)
+++|+.|++.++.+... .+..+...++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.+..+.
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~------ 352 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK------ 352 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH------
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc------
Confidence 77788888877765432 1112233456677777776665 333333 4566666666666665532210
Q ss_pred ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc--hhhhccccCcEEEcccccccccCchhhcCCCCCCEEE
Q 038273 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP--YWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLID 385 (623)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 385 (623)
....+..+++|++|++++|++++..+ ..+..+++|++|++++|++. .+|..+..+++|++|+
T Consensus 353 ---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 353 ---------------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416 (549)
T ss_dssp ---------------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEE
T ss_pred ---------------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEE
Confidence 01125667889999999999886533 45888999999999999998 6777888999999999
Q ss_pred ccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccC
Q 038273 386 LSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVI 465 (623)
Q Consensus 386 l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 465 (623)
+++|.+++. |.. .+++|++|++++|++++.. ..+++|++|++++|+++ .+
T Consensus 417 Ls~N~l~~l-~~~------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~i 466 (549)
T 2z81_A 417 LSSTGIRVV-KTC------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TL 466 (549)
T ss_dssp CTTSCCSCC-CTT------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SC
T ss_pred CCCCCcccc-cch------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cC
Confidence 999998632 221 1248999999999998643 57889999999999999 45
Q ss_pred CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273 466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 514 (623)
|. ...+++|+.|+|++|++++..|+.+..+++|+.|++++|++++..|
T Consensus 467 p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 55 4678999999999999999888889999999999999999988766
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-47 Score=407.50 Aligned_cols=460 Identities=19% Similarity=0.181 Sum_probs=258.2
Q ss_pred EEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCC
Q 038273 44 SVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKN 123 (623)
Q Consensus 44 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 123 (623)
+|++++|+++ .+|..+. ++|++|++++|.++ .++...+.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 4444444444 2333332 44555555555544 233222344555555555555554444444555555555555555
Q ss_pred CCCCCCChhhhhcCCCccEEecccCcccc-cCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCC--CEEEcccCcC-
Q 038273 124 FFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL--EYLVLSENSL- 199 (623)
Q Consensus 124 ~l~~~~p~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l- 199 (623)
.++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccc
Confidence 554 34443 24455555555555543 234455555555555555555542 112334444 5555555555
Q ss_pred -ccccccccccCC-CCCEEecccccCccccC-ccCcCCCCCcEEECcCCc-------CccccchhccCCCCCCEEECccc
Q 038273 200 -HGQLFYKKIYLR-KLARLHLDANYCTGEIP-KSLSNCSPLEGLYMSDNN-------LYGNIPAWLGNLSSLNDIMMAIN 269 (623)
Q Consensus 200 -~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~l~~n 269 (623)
.+..+..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|. +.+..+ .++.+++|+.|++++|
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 444444443332 12233444454443322 234455556666665554 333333 4555566666666655
Q ss_pred ccccccccccc---CCCCCcEEeCcCccceeeCCCC------CCCCcccEEEccCccccccCCCCCccCC---CceeEEe
Q 038273 270 HLQGPIPLEFC---QLNYLEILDLSENNISGTLPSC------SSHSTIQQVHLSKNMLYGPLKYGTFFNR---SSIVTLD 337 (623)
Q Consensus 270 ~~~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~ 337 (623)
.+.+..+..+. ..++|+.|++++|.+.+.+|.. ..++.|+.+++++|.+ .+|...+..+ .+|+.|+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 55432211110 1345666666666665444443 2355566666666555 2332112222 4566666
Q ss_pred CCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcC--CCCCccccccccCCCCCCCCCC
Q 038273 338 LSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG--QIPGCLDNTSLHNNGDNDGSSA 415 (623)
Q Consensus 338 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~~~~~~~~~~ 415 (623)
+++|.+.... ....+++|++|++++|.+.+..|..+..+++|+.|++++|++.+ ..|..+..
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-------------- 372 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-------------- 372 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------------
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------------
Confidence 6666665322 11456667777777777766566666667777777777776654 22222322
Q ss_pred CccccCCCCCCccEEEccCCcccccCCc-cccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccc
Q 038273 416 PTRYKGKPLNKMYGVDLSCNKLTGEIPP-QIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLV 494 (623)
Q Consensus 416 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 494 (623)
+++|++|++++|.+++.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+.
T Consensus 373 --------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 373 --------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp --------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred --------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 34677777777777754444 367788888999999988877666654 78999999999988 6777777
Q ss_pred cCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCC-CCC
Q 038273 495 ELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAV-PEA 550 (623)
Q Consensus 495 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~-~~~ 550 (623)
.+++|++|++++|+++...+..+..+++|+.+++++||+.| +|+..|. ..|
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c-----~c~~~~~~~~~ 493 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-----SCPRIDYLSRW 493 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC-----CHHHHHHHHHH
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc-----cCCchHHHHHH
Confidence 89999999999999986444447788899999999999999 5655454 444
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-47 Score=416.76 Aligned_cols=434 Identities=18% Similarity=0.238 Sum_probs=228.5
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCC------CC------cCChHHhhCCCCCCEEEccCCcCcCcCCCC
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNL------KG------EFPNWLLENNTNLNTLVLRNNSLSGPFRMP 108 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l------~~------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 108 (623)
+++.|+|+++.+.|.+|..++++++|++|++++|.+ .+ .+|... +.+|+ ++++++.+.+..+..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 788999999999888888899999999999988865 22 344433 23334 445544444433332
Q ss_pred CCC-------------------CCCCCEEEcc--CCCCCCCCChhhhhcCCCccEEecccCccccc--------------
Q 038273 109 IQP-------------------HWHLDTLHVS--KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS-------------- 153 (623)
Q Consensus 109 ~~~-------------------l~~L~~L~l~--~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~-------------- 153 (623)
+.. ...++.+.+. .|.+++ +|..+.. +++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence 221 0111111111 344554 5555444 45566666666655543
Q ss_pred ---CCcccC--CCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc-Ccc-ccccccccC------CCCCEEeccc
Q 038273 154 ---IPSSIG--DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS-LHG-QLFYKKIYL------RKLARLHLDA 220 (623)
Q Consensus 154 ---~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~------~~L~~L~l~~ 220 (623)
+|..+. ++++|++|++++|.+.+.+|..+ .++++|++|++++|. +++ ..|..+..+ ++|+.|++++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 555555 56666666666666555555443 455666666666665 554 455544443 5666666666
Q ss_pred ccCccccCc--cCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCC-CcEEeCcCcccee
Q 038273 221 NYCTGEIPK--SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNY-LEILDLSENNISG 297 (623)
Q Consensus 221 n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~ 297 (623)
|.++ .+|. .++.+++|+.|++++|.+++.+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.+.
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 6655 4554 55566666666666666655555 5555566666666666655 44455555555 666666666555
Q ss_pred eCCCCCC---CCcccEEEccCccccccCCCCCcc-------CCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccc
Q 038273 298 TLPSCSS---HSTIQQVHLSKNMLYGPLKYGTFF-------NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNL 367 (623)
Q Consensus 298 ~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 367 (623)
.+|.... +++|+.|++++|.+.+..+.. +. .+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 3343321 224555555555554444333 33 344555555555555533333344455555555555555
Q ss_pred cccCchhhcCCC-------CCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc
Q 038273 368 EGEVPNQLCRLK-------QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE 440 (623)
Q Consensus 368 ~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 440 (623)
....+..+.... +|+.|++++|+++ .+|..+.. ..+++|+.|++++|++++
T Consensus 470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA--------------------TTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------TTCTTCCEEECCSSCCSS-
T ss_pred CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--------------------ccCCCcCEEECCCCCCCC-
Confidence 522222222221 5555555555554 23322210 012355555555555553
Q ss_pred CCccccccccCCeeeC------CCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccc
Q 038273 441 IPPQIGKLTSIRALNF------SHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511 (623)
Q Consensus 441 ~~~~l~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 511 (623)
+|..+..+++|+.|++ ++|.+.+.+|..+..+++|++|+|++|++. .+|..+. ++|+.|++++|++..
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 4555555555555555 234444445555555555555555555552 3444333 455555555554443
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-45 Score=402.21 Aligned_cols=496 Identities=18% Similarity=0.153 Sum_probs=344.5
Q ss_pred CCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEE
Q 038273 15 KLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTL 94 (623)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (623)
++++|||++|.++...+.. +..+.+|++|+|++|++++..+.+|.++++|++|+|++|+++ .+|...|.++++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~--f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCCHHH--HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 7899999999887654433 234448999999999988777888899999999999999988 6777777889999999
Q ss_pred EccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCC----CEEEc
Q 038273 95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL----KFLDL 169 (623)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l 169 (623)
++++|++++..+..|+++++|++|++++|.+.+ .+|..+.. +++|++|++++|++++..+..+..+.++ ..+++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc-chhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999999888877788899999999999998874 34554444 7789999999999887777777654443 46778
Q ss_pred cCCcCCcccchHHhhCCCCCCEEEcccCcCcc-ccccccccCCCCCEEeccccc--------------------------
Q 038273 170 SHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG-QLFYKKIYLRKLARLHLDANY-------------------------- 222 (623)
Q Consensus 170 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~-------------------------- 222 (623)
+.|.+. .++...+ ....++.+++.+|.... ..+..+..+..++...+..+.
T Consensus 209 s~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 209 SLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp TTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred ccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 888877 6665554 34455666666664332 112223333344333332111
Q ss_pred ----Cc---cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccc
Q 038273 223 ----CT---GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295 (623)
Q Consensus 223 ----~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 295 (623)
.. ......+....+++.+.+.++.+... ..+.....++.|++.+|.+....+ ..+..|+.+++..|..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence 10 11122233444555555555554322 223444556666666665553322 2344556666666555
Q ss_pred eeeCCCCCCCCcccEEEccCcccccc--CCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccC-c
Q 038273 296 SGTLPSCSSHSTIQQVHLSKNMLYGP--LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEV-P 372 (623)
Q Consensus 296 ~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~ 372 (623)
. ..+....+++|+.+++++|.+... .+. .+..+.+++.+++..+.... .+..+..+++|+.++++.+...... .
T Consensus 362 ~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 362 G-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp C-CBCCCCBCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred C-CCcccccccccccchhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccc
Confidence 4 223333456666666666655321 111 13445566666666665553 3334555667777777666654332 3
Q ss_pred hhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccc-ccCCccccccccC
Q 038273 373 NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLT-GEIPPQIGKLTSI 451 (623)
Q Consensus 373 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L 451 (623)
..+..+++++.++++.|.+.+..+..+.. ++.++.|++++|.+. +..|..+..+++|
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~----------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNG----------------------LSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTT----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccccccccccccccccccccccccccccc----------------------chhhhhhhhhhcccccccCchhhhhcccc
Confidence 44666677777777777776655554443 459999999999854 4578889999999
Q ss_pred CeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCcccc-CCCCCccccC
Q 038273 452 RALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQF-TTFKEDSYEG 530 (623)
Q Consensus 452 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~l~l~~ 530 (623)
++|+|++|+++++.|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|+.+..+ ++|+.+++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 999999999999999999999999999999999999989999999999999999999999999998887 6899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 038273 531 NPLLCGKPLPDCDVAAVPEAS 551 (623)
Q Consensus 531 Np~~C~~~l~~C~~~~~~~~~ 551 (623)
|||.| +|+..|+..|.
T Consensus 577 Np~~C-----~C~~~~~~~wl 592 (635)
T 4g8a_A 577 NDFAC-----TCEHQSFLQWI 592 (635)
T ss_dssp CCBCC-----SGGGHHHHHHH
T ss_pred CCCcc-----cCCcHHHHHHH
Confidence 99999 67766666554
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-47 Score=413.41 Aligned_cols=444 Identities=17% Similarity=0.203 Sum_probs=367.1
Q ss_pred CCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCC------C-----CCCCCEEEccCCCCCCCCChh
Q 038273 64 HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQ------P-----HWHLDTLHVSKNFFQGNIPLE 132 (623)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------~-----l~~L~~L~l~~n~l~~~~p~~ 132 (623)
.+++.|+|+++.+.|.+|..+ +++++|++|+|++|.+.... ..++ . +..|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCC-ccccccccccCchHHHHHHHH-hhHHHhhhccCchhh
Confidence 579999999999999999875 89999999999999762110 1111 1 33566 777777777776666
Q ss_pred hhhcCCCccEEecc--------------------cCcccccCCcccCCCCCCCEEEccCCcCCcc---------------
Q 038273 133 IGVYFPRLVYLNLS--------------------RNDFNGSIPSSIGDMNSLKFLDLSHNQLTGE--------------- 177 (623)
Q Consensus 133 ~~~~l~~L~~L~L~--------------------~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------- 177 (623)
+...+.++..+++. .|++++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 55333222222222 578887 899999999999999999999964
Q ss_pred --cchHHh-hCCCCCCEEEcccCcCccccccccccCCCCCEEeccccc-Ccc-ccCccCcCC------CCCcEEECcCCc
Q 038273 178 --IPEHLV-IGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY-CTG-EIPKSLSNC------SPLEGLYMSDNN 246 (623)
Q Consensus 178 --~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~L~~n~ 246 (623)
+|..+. .++++|++|++++|.+.+..|..+.++++|+.|++++|+ +++ .+|..++.+ ++|++|++++|+
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 887762 279999999999999999999999999999999999998 888 788777765 999999999999
Q ss_pred Cccccch--hccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCC-CCCCc-ccEEEccCccccccC
Q 038273 247 LYGNIPA--WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC-SSHST-IQQVHLSKNMLYGPL 322 (623)
Q Consensus 247 l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~-L~~L~l~~n~l~~~~ 322 (623)
++ .+|. .++.+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. .+|.. ..+++ |++|++++|.+. .+
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 99 7787 89999999999999999998888 8999999999999999999 55544 46788 999999999997 66
Q ss_pred CCCCccCC--CceeEEeCCCCcCCCCCchhhh-------ccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcC
Q 038273 323 KYGTFFNR--SSIVTLDLSYNSFSGNIPYWIE-------RLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG 393 (623)
Q Consensus 323 ~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 393 (623)
|.. +... ++|++|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|+.|++++|+++.
T Consensus 393 p~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 393 PNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred chh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 654 5554 4899999999999998888887 78899999999999996555667789999999999999984
Q ss_pred CCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccc--ccccCCeeeCCCCcccccCCccCCC
Q 038273 394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG--KLTSIRALNFSHNNLTGVIPVSFSN 471 (623)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (623)
..+..+.... .....+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++ +|..+..
T Consensus 472 i~~~~~~~~~---------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~ 534 (636)
T 4eco_A 472 IPKNSLKDEN---------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534 (636)
T ss_dssp CCSSSSEETT---------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred cCHHHhcccc---------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc
Confidence 3333332210 00112348999999999999 7888887 99999999999999997 7889999
Q ss_pred CCCCcEEEC------CCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCC
Q 038273 472 LKQVESLDV------SYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG 536 (623)
Q Consensus 472 l~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~ 536 (623)
+++|+.|+| ++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.+++++||+.|-
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 999999999 56788889999999999999999999999 56777654 8999999999999983
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-46 Score=414.53 Aligned_cols=461 Identities=18% Similarity=0.220 Sum_probs=318.6
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEc-cCCCCCCcCChHHhhCCCCCCE-----E---------Ec-cCCcCc--
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDF-SDSNLKGEFPNWLLENNTNLNT-----L---------VL-RNNSLS-- 102 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-s~n~l~~~~~~~~~~~l~~L~~-----L---------~L-~~n~i~-- 102 (623)
+++.|+|+++.+.|.+|..++++++|++|+| ++|.+.|..|-........+.. + .. ....+.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 7999999999999999999999999999999 7776654422110000000000 0 00 000000
Q ss_pred ---------CcCCCCCCCCCCCCEEEccC--CCCCCCCChhhhhcCCCccEEecccCcccc-----------------cC
Q 038273 103 ---------GPFRMPIQPHWHLDTLHVSK--NFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-----------------SI 154 (623)
Q Consensus 103 ---------~~~~~~~~~l~~L~~L~l~~--n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~-----------------~~ 154 (623)
...+........++.+.+.. |.+++ +|..+.. +++|+.|+|++|.+++ .+
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00000011112222222222 44553 5655554 5566666666666665 26
Q ss_pred CcccC--CCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc-Ccc-ccccccccCC-------CCCEEecccccC
Q 038273 155 PSSIG--DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS-LHG-QLFYKKIYLR-------KLARLHLDANYC 223 (623)
Q Consensus 155 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~-------~L~~L~l~~n~~ 223 (623)
|..++ ++++|++|++++|.+.+.+|..+ .++++|++|++++|. +++ ..|..+..++ +|+.|++++|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 66665 77777777777777666666544 567777777777776 665 5555444443 777777777777
Q ss_pred ccccCc--cCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCC-CcEEeCcCccceeeCC
Q 038273 224 TGEIPK--SLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNY-LEILDLSENNISGTLP 300 (623)
Q Consensus 224 ~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~ 300 (623)
+ .+|. .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 7 5666 6777777777777777777 555 6777777777787777777 56666777777 888888888777 555
Q ss_pred CCCC---CCcccEEEccCccccccCCCCC--c--cCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCch
Q 038273 301 SCSS---HSTIQQVHLSKNMLYGPLKYGT--F--FNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN 373 (623)
Q Consensus 301 ~~~~---~~~L~~L~l~~n~l~~~~~~~~--~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 373 (623)
.... .++|+.|++++|.+.+.++... + ..+++|+.|++++|.++...+..+..+++|+.|++++|++. .+|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 4442 2348888888888766554211 1 23458999999999999544445568999999999999998 4454
Q ss_pred hhcC--------CCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccc
Q 038273 374 QLCR--------LKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI 445 (623)
Q Consensus 374 ~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 445 (623)
.... +++|+.|++++|+++ .+|..+.. ..+++|+.|++++|.+++ +|..+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~--------------------~~l~~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA--------------------TTLPYLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------TTCTTCCEEECCSSCCSS-CCCGG
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhh--------------------ccCCCcCEEEeCCCCCCc-cchhh
Confidence 4332 238999999999998 55554430 135699999999999996 78899
Q ss_pred cccccCCeeeCCC------CcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccc
Q 038273 446 GKLTSIRALNFSH------NNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQ 519 (623)
Q Consensus 446 ~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 519 (623)
..+++|+.|+|++ |.+.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..+..
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 9999999999976 788889999999999999999999999 57887765 69999999999999887776666
Q ss_pred cCCCCCccccCCCCCC
Q 038273 520 FTTFKEDSYEGNPLLC 535 (623)
Q Consensus 520 ~~~l~~l~l~~Np~~C 535 (623)
........+.+|+..+
T Consensus 850 ~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 850 YIEAGMYVLLYDKTQD 865 (876)
T ss_dssp HHHTTCCEEECCTTSE
T ss_pred cccchheeecCCCccc
Confidence 6666777888888765
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=385.17 Aligned_cols=453 Identities=19% Similarity=0.184 Sum_probs=368.6
Q ss_pred cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc
Q 038273 17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL 96 (623)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L 96 (623)
++||+++|.++.. +.. ++ .+|++|++++|++.+..|..+.++++|++|++++|.+++..|. .|.++++|++|++
T Consensus 3 ~~l~ls~n~l~~i-p~~---~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHV-PKD---LS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSC-CCS---CC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEEC
T ss_pred ceEecCCCCcccc-ccc---cc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEec
Confidence 6899999998853 332 22 4899999999999988888999999999999999999944454 4689999999999
Q ss_pred cCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCC--CEEEccCCc
Q 038273 97 RNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL--KFLDLSHNQ 173 (623)
Q Consensus 97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~ 173 (623)
++|++++. |.. .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++ ..+..+++| ++|++++|.
T Consensus 77 s~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 77 SHNKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred CCCceeec-Ccc--ccCCccEEeccCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 99999864 444 89999999999999985 46777766 7899999999999885 457777888 999999999
Q ss_pred C--CcccchHHhhCCC-CCCEEEcccCcCccccc-cccccCCCCCEEeccccc-------CccccCccCcCCCCCcEEEC
Q 038273 174 L--TGEIPEHLVIGCF-NLEYLVLSENSLHGQLF-YKKIYLRKLARLHLDANY-------CTGEIPKSLSNCSPLEGLYM 242 (623)
Q Consensus 174 l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~L 242 (623)
+ .+..|..+ ..+. ....+++++|.+.+..+ ..+..+++|+.+++++|. +.+..+ .++.+++|+.|++
T Consensus 150 l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l 227 (520)
T 2z7x_B 150 TYGEKEDPEGL-QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTL 227 (520)
T ss_dssp TTTSSCCTTTT-TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEE
T ss_pred ccccccccccc-cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccc
Confidence 9 65555543 3333 23366778888766444 467789999999999987 555555 6889999999999
Q ss_pred cCCcCccccchhcc---CCCCCCEEECccccccccccccc-----cCCCCCcEEeCcCccceeeCCCCC-----CCCccc
Q 038273 243 SDNNLYGNIPAWLG---NLSSLNDIMMAINHLQGPIPLEF-----CQLNYLEILDLSENNISGTLPSCS-----SHSTIQ 309 (623)
Q Consensus 243 ~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~L~ 309 (623)
++|.+.+..+..+. ..++|++|++++|.+.+..|..+ ..+++|+.+++++|.+ .+|... ...+++
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence 99988754333221 24699999999999998888887 8999999999999988 444211 125799
Q ss_pred EEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccc--cCchhhcCCCCCCEEEcc
Q 038273 310 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEG--EVPNQLCRLKQLRLIDLS 387 (623)
Q Consensus 310 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~ 387 (623)
.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+ ..|..+..+++|++|+++
T Consensus 306 ~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 306 NFTVSGTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred EEEcCCCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 9999999874422 13678999999999999998889999999999999999999986 456789999999999999
Q ss_pred CCcCcCCCCCc-cccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCC
Q 038273 388 NNNLFGQIPGC-LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP 466 (623)
Q Consensus 388 ~n~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 466 (623)
+|++.+.+|.. +. .+++|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|
T Consensus 383 ~N~l~~~l~~~~~~----------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip 437 (520)
T 2z7x_B 383 QNSVSYDEKKGDCS----------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP 437 (520)
T ss_dssp SSCCBCCGGGCSCC----------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred CCcCCcccccchhc----------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence 99998744432 32 246999999999999887777665 79999999999999 677
Q ss_pred ccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273 467 VSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 514 (623)
..+..+++|++|++++|+++...+..+..+++|++|++++|++++..+
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 777799999999999999995444448899999999999999987544
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-43 Score=380.58 Aligned_cols=457 Identities=20% Similarity=0.179 Sum_probs=340.0
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
..+++++++|++++ +|..+. ++|++|++++|.++ .++...|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 55889999998875 565443 78999999999988 555555688999999999999998888888999999999999
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCccccc-CCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCC--CEEEcccC
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS-IPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNL--EYLVLSEN 197 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n 197 (623)
++|.++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++ .. +..+++| ++|++++|
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEES
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecc
Confidence 999988 77776 478999999999998863 35789999999999999998873 22 3445555 99999999
Q ss_pred cC--ccccccccccCC--CCCEEecccccCccccC-ccCcCCCCCcEEECcCCcCc----cccchhccCCCCCCEEECcc
Q 038273 198 SL--HGQLFYKKIYLR--KLARLHLDANYCTGEIP-KSLSNCSPLEGLYMSDNNLY----GNIPAWLGNLSSLNDIMMAI 268 (623)
Q Consensus 198 ~l--~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~ 268 (623)
.+ .+..+..+..+. .+ .+++++|.+.+..+ ..+..+++|+.+++++|... ......+..+++|+.+++.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 88 777777766654 22 45677777665444 34567888999999887521 12234577788888888887
Q ss_pred cccccccccc---ccCCCCCcEEeCcCccceeeCCCCC---CCCcccEEEccCccccc-cCCCCCcc---CCCceeEEeC
Q 038273 269 NHLQGPIPLE---FCQLNYLEILDLSENNISGTLPSCS---SHSTIQQVHLSKNMLYG-PLKYGTFF---NRSSIVTLDL 338 (623)
Q Consensus 269 n~~~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~L~~L~l~~n~l~~-~~~~~~~~---~~~~L~~L~L 338 (623)
+.+.+..... ....++|+.|++++|.+.+.+|... ...+++.|.+.++.... .++...+. ...++++|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 7765321111 1234589999999998887766543 12444444444333211 22211111 1256899999
Q ss_pred CCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCC--CCccccccccCCCCCCCCCCC
Q 038273 339 SYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI--PGCLDNTSLHNNGDNDGSSAP 416 (623)
Q Consensus 339 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~~~~~~~~~~~ 416 (623)
++|.+..... ...+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.. |..+.
T Consensus 339 ~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------------- 400 (562)
T 3a79_B 339 SDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK---------------- 400 (562)
T ss_dssp ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT----------------
T ss_pred cCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc----------------
Confidence 9998764321 256789999999999998878888899999999999999987532 22232
Q ss_pred ccccCCCCCCccEEEccCCcccccCCc-cccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcccccc
Q 038273 417 TRYKGKPLNKMYGVDLSCNKLTGEIPP-QIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE 495 (623)
Q Consensus 417 ~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 495 (623)
.+++|+.|++++|.+++.+|. .+..+++|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..
T Consensus 401 ------~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~ 471 (562)
T 3a79_B 401 ------NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH 471 (562)
T ss_dssp ------TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTS
T ss_pred ------CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcC
Confidence 346899999999999874554 578889999999999999877666554 78999999999998 67776679
Q ss_pred CCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 496 LNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 496 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+++|++|++++|+++...+..+..+++|+.+++++||+.|+|
T Consensus 472 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 999999999999999655544888999999999999999943
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.2e-43 Score=384.96 Aligned_cols=444 Identities=18% Similarity=0.172 Sum_probs=346.2
Q ss_pred CCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc-cCCcCcCcCCCCCCCC-CCCCEEEc---------------cCCCCC
Q 038273 64 HDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL-RNNSLSGPFRMPIQPH-WHLDTLHV---------------SKNFFQ 126 (623)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L-~~n~i~~~~~~~~~~l-~~L~~L~l---------------~~n~l~ 126 (623)
.+++.|+|+++.+.|.+|+.+ +++++|++|+| ++|.+.+..+...... ..+....+ ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578889999999988888775 88999999999 7887766432211111 00000000 000000
Q ss_pred CCCChhhh----------hcCCCccEEeccc--CcccccCCcccCCCCCCCEEEccCCcCCc-----------------c
Q 038273 127 GNIPLEIG----------VYFPRLVYLNLSR--NDFNGSIPSSIGDMNSLKFLDLSHNQLTG-----------------E 177 (623)
Q Consensus 127 ~~~p~~~~----------~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~ 177 (623)
+.++..+. .....++.+.+.. |.+++ +|..+.++++|++|++++|++++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00000000 1122455555554 78887 89999999999999999999996 2
Q ss_pred cchHH-hhCCCCCCEEEcccCcCccccccccccCCCCCEEeccccc-Ccc-ccCccCc-------CCCCCcEEECcCCcC
Q 038273 178 IPEHL-VIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY-CTG-EIPKSLS-------NCSPLEGLYMSDNNL 247 (623)
Q Consensus 178 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~-------~l~~L~~L~L~~n~l 247 (623)
+|..+ |.++++|++|++++|.+.+..|..+.++++|+.|++++|+ +++ .+|..+. .+++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 88876 4489999999999999999999999999999999999998 887 6776444 455999999999999
Q ss_pred ccccch--hccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCC-CCCCCc-ccEEEccCccccccCC
Q 038273 248 YGNIPA--WLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS-CSSHST-IQQVHLSKNMLYGPLK 323 (623)
Q Consensus 248 ~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~-L~~L~l~~n~l~~~~~ 323 (623)
+ .+|. .++.+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|. ...+++ |+.|++++|.+. .+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 9 7787 8999999999999999999 667 8999999999999999998 5654 446777 999999999996 666
Q ss_pred CCCccCCC--ceeEEeCCCCcCCCCCchh---hh--ccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCC
Q 038273 324 YGTFFNRS--SIVTLDLSYNSFSGNIPYW---IE--RLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396 (623)
Q Consensus 324 ~~~~~~~~--~L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 396 (623)
.. +...+ +|+.|++++|++.+..|.. +. .+++|+.|++++|.+....+..+..+++|+.|++++|++....+
T Consensus 636 ~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 44 55554 4999999999998766532 22 34589999999999995544555689999999999999983333
Q ss_pred CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccc--ccccCCeeeCCCCcccccCCccCCCCCC
Q 038273 397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIG--KLTSIRALNFSHNNLTGVIPVSFSNLKQ 474 (623)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 474 (623)
..+.... .....+++|+.|++++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++
T Consensus 715 ~~~~~~~---------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 715 NSLKPKD---------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp TSSSCTT---------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred HHhcccc---------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 3222110 00123458999999999999 7888887 99999999999999997 6888999999
Q ss_pred CcEEECCC------CcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCC
Q 038273 475 VESLDVSY------NNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 535 (623)
Q Consensus 475 L~~L~Ls~------n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C 535 (623)
|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.+++++||+..
T Consensus 778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 99999976 888889999999999999999999999 67787653 699999999999865
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-41 Score=355.95 Aligned_cols=380 Identities=21% Similarity=0.233 Sum_probs=296.1
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273 116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS 195 (623)
Q Consensus 116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 195 (623)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45777777777 7776 2 36899999999999888888899999999999999988767777777889999999999
Q ss_pred cCcCccccccccccCCCCCEEecccccCccccCc--cCcCCCCCcEEECcCCcCccccchh-ccCCCCCCEEECcccccc
Q 038273 196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPK--SLSNCSPLEGLYMSDNNLYGNIPAW-LGNLSSLNDIMMAINHLQ 272 (623)
Q Consensus 196 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~ 272 (623)
+|.+.+..+..+.++++|++|++++|.+++..+. .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 9998888888888888899999988888764433 4888888999999988888776765 788888888888888888
Q ss_pred ccccccccCC--CCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchh
Q 038273 273 GPIPLEFCQL--NYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW 350 (623)
Q Consensus 273 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 350 (623)
+..+..+..+ .+|+.|++++|.+.+..+..... .. ...+..+++|++|++++|.+++..+..
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------EK-CGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH---------------HH-HCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred ccChhhhhccccccccccccccCcccccchhhccc---------------cc-cccccccceeeeEecCCCcccccchhh
Confidence 7777666554 56777777777665322221100 00 001334567777777777777666666
Q ss_pred hhcc---ccCcEEEccccccccc----------Cchhhc--CCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCC
Q 038273 351 IERL---TRLRYLILANNNLEGE----------VPNQLC--RLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSA 415 (623)
Q Consensus 351 ~~~l---~~L~~L~L~~n~l~~~----------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~ 415 (623)
+... ++|+.|++++|...+. .+..+. ..++|+.|++++|.+.+..|..+...
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l------------- 298 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF------------- 298 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-------------
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-------------
Confidence 5543 6777777777654322 111222 23689999999999887777766543
Q ss_pred CccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcccccc
Q 038273 416 PTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE 495 (623)
Q Consensus 416 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 495 (623)
++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+..
T Consensus 299 ---------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 299 ---------TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp ---------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred ---------CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 48999999999999888888999999999999999998888889999999999999999999888889999
Q ss_pred CCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273 496 LNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP 538 (623)
Q Consensus 496 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~ 538 (623)
+++|++|++++|++++..+..+..+++|+.+++++||+.|+|+
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999998777778889999999999999999554
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-41 Score=365.41 Aligned_cols=461 Identities=18% Similarity=0.155 Sum_probs=351.8
Q ss_pred ccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCC
Q 038273 10 FFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNT 89 (623)
Q Consensus 10 l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~ 89 (623)
-..+...+++|++++.++... .. ++ .+|++|++++|++.+..+..+.++++|++|++++|.+++ ++...|.+++
T Consensus 27 ~~~~~~~~~l~ls~~~L~~ip-~~---~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 100 (562)
T 3a79_B 27 PFSNELESMVDYSNRNLTHVP-KD---LP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQ 100 (562)
T ss_dssp ------CCEEECTTSCCCSCC-TT---SC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCT
T ss_pred ccccCCCcEEEcCCCCCccCC-CC---CC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCC
Confidence 345566799999999988533 22 22 489999999999998888899999999999999999994 5444468999
Q ss_pred CCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC-CCChhhhhcCCCccEEecccCcccccCCcccCCCCCC--CE
Q 038273 90 NLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL--KF 166 (623)
Q Consensus 90 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~ 166 (623)
+|++|++++|+++.. |.. .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.++.. .+..+++| ++
T Consensus 101 ~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~ 173 (562)
T 3a79_B 101 DLEYLDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSC 173 (562)
T ss_dssp TCCEEECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred CCCEEECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeE
Confidence 999999999999864 433 89999999999999984 23456655 78999999999998853 45555555 99
Q ss_pred EEccCCcC--CcccchHHhhCCC-CCCEEEcccCcCcccccc-ccccCCCCCEEecccccCc----cccCccCcCCCCCc
Q 038273 167 LDLSHNQL--TGEIPEHLVIGCF-NLEYLVLSENSLHGQLFY-KKIYLRKLARLHLDANYCT----GEIPKSLSNCSPLE 238 (623)
Q Consensus 167 L~l~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~ 238 (623)
|++++|.+ ++..|..+ ..+. ..-.+++++|.+.+..+. .+..+++|+.+++++|... ......+..+++|+
T Consensus 174 L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEESSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEeecccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 99999998 65555443 3333 122557778877664443 4567889999999998521 01223467889999
Q ss_pred EEECcCCcCccccchh---ccCCCCCCEEECccccccccccccc-----cCCCCCcEEeCcCccceeeCCCC-----CCC
Q 038273 239 GLYMSDNNLYGNIPAW---LGNLSSLNDIMMAINHLQGPIPLEF-----CQLNYLEILDLSENNISGTLPSC-----SSH 305 (623)
Q Consensus 239 ~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~-----~~~ 305 (623)
.+++.++.+.+..... ....++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ .+|.. ...
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~ 330 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHT
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhcc
Confidence 9999888765432111 1234589999999999998777766 5666666666666654 22211 123
Q ss_pred CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccC--chhhcCCCCCCE
Q 038273 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEV--PNQLCRLKQLRL 383 (623)
Q Consensus 306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~ 383 (623)
.++++|++++|.+.... ....+++|++|++++|.+++..|..+..+++|+.|++++|++.+.. |..+..+++|+.
T Consensus 331 ~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 57999999999874321 1267899999999999999888999999999999999999998633 567899999999
Q ss_pred EEccCCcCcCCCCC-ccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCccc
Q 038273 384 IDLSNNNLFGQIPG-CLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLT 462 (623)
Q Consensus 384 L~l~~n~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 462 (623)
|++++|++.+.+|. .+.. +++|+.|++++|.+++..|..+. ++|+.|++++|.++
T Consensus 408 L~l~~N~l~~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAW----------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp EECTTSCCBSCCSSCCCCC----------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred EECCCCcCCCccChhhhcC----------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 99999999874543 2332 46999999999999877776654 79999999999999
Q ss_pred ccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273 463 GVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 514 (623)
.+|..+..+++|++|+|++|+++...+..+..+++|+.|++++|++.+..+
T Consensus 464 -~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 464 -SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp -CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred -ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 566666699999999999999995444448999999999999999987655
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.6e-40 Score=345.88 Aligned_cols=383 Identities=17% Similarity=0.174 Sum_probs=208.8
Q ss_pred cEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCc-CCCCCCCCCCCCEEEcc
Q 038273 43 ESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLHVS 121 (623)
Q Consensus 43 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~ 121 (623)
+.++.+++++. .+|. + .++|++|++++|.+++..|.. +.++++|++|++++|.+.+. .+..|.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34555555543 2333 1 145555555555555322322 35555555555555555422 23445555555555555
Q ss_pred CCCCCCCCChhhhhcCCCccEEecccCcccccCCcc--cCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcC
Q 038273 122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSS--IGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSL 199 (623)
Q Consensus 122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 199 (623)
+|.+.+..|..+.. +++|++|++++|.+++..+.. +.++++|++|++++|.+++..|..++.++++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 55554333333332 445555555555544322222 444455555555555444222333334444444444444444
Q ss_pred ccccccccccCCCCCEEecccccCccccCccCcCC--CCCcEEECcCCcCccccchh--------ccCCCCCCEEECccc
Q 038273 200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC--SPLEGLYMSDNNLYGNIPAW--------LGNLSSLNDIMMAIN 269 (623)
Q Consensus 200 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~l~~n 269 (623)
++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|
T Consensus 167 ------------------------~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 167 ------------------------KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp ------------------------SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred ------------------------cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence 44444433333 34555555555544332222 123345555555555
Q ss_pred cccccccccccC---CCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC
Q 038273 270 HLQGPIPLEFCQ---LNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346 (623)
Q Consensus 270 ~~~~~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 346 (623)
.+.+..+..+.. .++|+.|++++|...+... ..+.+.+.
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------------------------~~~~~~~~ 264 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------------------------------GHTNFKDP 264 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------------------------------TCCSSCCC
T ss_pred cccccchhhhhccccccceeeEeecccccccccc--------------------------------------chhhhccC
Confidence 555444443322 2455555555554321100 00011111
Q ss_pred Cchhhhc--cccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCC
Q 038273 347 IPYWIER--LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPL 424 (623)
Q Consensus 347 ~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 424 (623)
.+..+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+.. +
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------l 322 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----------------------L 322 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT----------------------C
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC----------------------c
Confidence 1111111 245666666666666555666666666666666666666555544433 2
Q ss_pred CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273 425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV 504 (623)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 504 (623)
++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 323 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 36666777777776667778888899999999999998888888999999999999999999777777888999999999
Q ss_pred ccCcccccCCC
Q 038273 505 AHNNLSGKIPE 515 (623)
Q Consensus 505 ~~N~l~~~~~~ 515 (623)
++|++++..|.
T Consensus 403 ~~N~l~~~~~~ 413 (455)
T 3v47_A 403 HTNPWDCSCPR 413 (455)
T ss_dssp CSSCBCCCTTT
T ss_pred cCCCcccCCCc
Confidence 99999887773
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.7e-39 Score=353.33 Aligned_cols=471 Identities=20% Similarity=0.194 Sum_probs=372.0
Q ss_pred ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhC
Q 038273 8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN 87 (623)
Q Consensus 8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 87 (623)
.+|.++++|++|||++|.++...+.. +..+.+|++|+|++|++++..+.+|.++++|++|++++|.++ .++...|++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~--f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~ 146 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH 146 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhH--hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhc
Confidence 47999999999999999987655433 234459999999999999877888999999999999999999 677766799
Q ss_pred CCCCCEEEccCCcCcCc-CCCCCCCCCCCCEEEccCCCCCCCCChhhhh---cCCCccEEecccCcccccCCcccCCCCC
Q 038273 88 NTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV---YFPRLVYLNLSRNDFNGSIPSSIGDMNS 163 (623)
Q Consensus 88 l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 163 (623)
+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+.. .......++++.|.+....+..+ ....
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~ 225 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIR 225 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchh
Confidence 99999999999999764 5677889999999999999999555554433 11234578999999986555544 4456
Q ss_pred CCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc---------------------------------cccccccccC
Q 038273 164 LKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH---------------------------------GQLFYKKIYL 210 (623)
Q Consensus 164 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------------------------------~~~~~~~~~~ 210 (623)
++.+++.+|.....++...+.++..++...+..+... ......+...
T Consensus 226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 305 (635)
T 4g8a_A 226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305 (635)
T ss_dssp EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence 7888998887765666666677777776665422110 0112233455
Q ss_pred CCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeC
Q 038273 211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDL 290 (623)
Q Consensus 211 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 290 (623)
.+++.+++.++.+... ..+.....++.|++.+|.+....+. .+..|+.+++..|..... .....+++|+.+++
T Consensus 306 ~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL 378 (635)
T ss_dssp TTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred cccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchh
Confidence 6788888888776643 2356678899999999988755443 457888999998887643 23457899999999
Q ss_pred cCccceeeCCCC---CCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCc-hhhhccccCcEEEccccc
Q 038273 291 SENNISGTLPSC---SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLTRLRYLILANNN 366 (623)
Q Consensus 291 ~~n~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 366 (623)
++|.+....... ....+++.+++..+..... +.. +..+++|+.++++.+......+ ..+..+++++.++++.|.
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hccccccccccccchhhhhhhhhhhccccccccc-ccc-ccccccccchhhhhccccccccccccccccccccccccccc
Confidence 999876432221 2577899999998887443 333 7788999999999887665443 467889999999999999
Q ss_pred ccccCchhhcCCCCCCEEEccCCcCc-CCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccc
Q 038273 367 LEGEVPNQLCRLKQLRLIDLSNNNLF-GQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI 445 (623)
Q Consensus 367 l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 445 (623)
+....+..+..++.|+.|++++|++. +..|..+.. +++|++|++++|++++..|..|
T Consensus 457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------------------l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------LRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------CTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccccchhhhhhhhhhcccccccCchhhhh----------------------ccccCEEECCCCccCCcChHHH
Confidence 99888889999999999999999854 345555544 4599999999999999999999
Q ss_pred cccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccC-CCCCeeecccCcccccC
Q 038273 446 GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVEL-NVLAVFSVAHNNLSGKI 513 (623)
Q Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~ 513 (623)
.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|+.+..+ ++|++|++++|++.+..
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999999999999999999999999999999999999999999999988 68999999999998753
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-38 Score=330.33 Aligned_cols=402 Identities=24% Similarity=0.284 Sum_probs=213.2
Q ss_pred CcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCC-------------CCEEEccCCcCcCcCC
Q 038273 40 FQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTN-------------LNTLVLRNNSLSGPFR 106 (623)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~-------------L~~L~L~~n~i~~~~~ 106 (623)
.+|++|++++|++ +.+|..++++++|++|++++|.+.|.+|..+ +.+.+ +++|++++|++++...
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 3799999999998 7889889999999999999998887888765 55554 4888888888776332
Q ss_pred CCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCC
Q 038273 107 MPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGC 186 (623)
Q Consensus 107 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 186 (623)
-.++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|+++ .+|. +.++
T Consensus 89 ----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l 152 (454)
T 1jl5_A 89 ----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNS 152 (454)
T ss_dssp ----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred ----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCC
Confidence 13678888888888874 6643 3578888888887774 2221 167888888888887 5773 5678
Q ss_pred CCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEEC
Q 038273 187 FNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMM 266 (623)
Q Consensus 187 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 266 (623)
++|++|++++|.+.+ .|.. .++|+.|++++|.+++ +| .++.+++|+.|++++|.+++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 888888888887765 3332 2477888888887775 44 47777888888888887764 3322 247777888
Q ss_pred ccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCC
Q 038273 267 AINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 346 (623)
Q Consensus 267 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 346 (623)
++|.+. .+| .+..+++|+.|++++|++.+ +|. ..++|+.|++++|.+.+ ++.. +++|++|++++|.+++.
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcc
Confidence 877777 444 36777777778777777763 332 23567777777776643 3321 35666677776666642
Q ss_pred CchhhhccccCcEEEcccccccccCchhhcCC-CCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCC
Q 038273 347 IPYWIERLTRLRYLILANNNLEGEVPNQLCRL-KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLN 425 (623)
Q Consensus 347 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 425 (623)
+. ..++|+.|++++|++.+. ..+ ++|+.|++++|++++ +|.. ++
T Consensus 293 -~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~-------------------------~~ 337 (454)
T 1jl5_A 293 -SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL-------------------------PP 337 (454)
T ss_dssp -SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC-------------------------CT
T ss_pred -cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc-------------------------CC
Confidence 11 014666666666666532 122 366666666666654 2221 23
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccc--cCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeee
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTG--VIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFS 503 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 503 (623)
+|+.|++++|.++ .+|. .+++|++|++++|.+++ .+|..+. .| +.|...+.+|.. +++|++|+
T Consensus 338 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ 402 (454)
T 1jl5_A 338 RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLH 402 (454)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC-------------------
T ss_pred cCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEE
Confidence 5666666666666 3443 34566666666666665 3343332 12 224444444432 37899999
Q ss_pred cccCcccc--cCCCCccccCCCCCccccCCCCCC
Q 038273 504 VAHNNLSG--KIPEWTAQFTTFKEDSYEGNPLLC 535 (623)
Q Consensus 504 l~~N~l~~--~~~~~~~~~~~l~~l~l~~Np~~C 535 (623)
+++|++++ .+| ++++.+++.+|...|
T Consensus 403 ls~N~l~~~~~iP------~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 403 VETNPLREFPDIP------ESVEDLRMNSERVVD 430 (454)
T ss_dssp ----------------------------------
T ss_pred CCCCcCCccccch------hhHhheeCcCcccCC
Confidence 99999987 444 345666777777666
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.7e-38 Score=328.34 Aligned_cols=414 Identities=22% Similarity=0.253 Sum_probs=274.9
Q ss_pred ccccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCC-------------cEEEccCC
Q 038273 8 EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDL-------------EYVDFSDS 74 (623)
Q Consensus 8 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~ls~n 74 (623)
|+-.+.++|++|++++|.+ +..+.. +..+.+|++|++++|.+.+.+|..++++++| ++|++++|
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~--i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVE--AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccccccchhhhcccCch-hhCChh--HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 3445679999999999998 455543 2333489999999999999999999998875 99999999
Q ss_pred CCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccC
Q 038273 75 NLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSI 154 (623)
Q Consensus 75 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~ 154 (623)
.++ .+|. ..++|++|++++|.+++ +|.. .++|++|++++|.+. .+|.. .++|++|++++|.+++ +
T Consensus 82 ~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 82 GLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp CCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-C
T ss_pred ccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-C
Confidence 998 5665 24799999999999988 4433 489999999999998 45532 3699999999999996 6
Q ss_pred CcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCC
Q 038273 155 PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC 234 (623)
Q Consensus 155 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 234 (623)
| +++++++|++|++++|+++ .+|.. ..+|++|++++|.+.+ .+ .+..+++|+.|++++|.+++ +|.. .
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~ 214 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---P 214 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred c-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence 7 5999999999999999998 67753 4699999999999987 34 68999999999999999985 4433 2
Q ss_pred CCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEcc
Q 038273 235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314 (623)
Q Consensus 235 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 314 (623)
++|++|++++|.+. .+| .++.+++|++|++++|++.+. |. .+++|+.|++++|.+.+ +|.. .++|++|+++
T Consensus 215 ~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls 285 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVS 285 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECC
T ss_pred CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc--cCcCCEEECc
Confidence 68999999999998 556 489999999999999999853 33 34799999999999985 4443 4899999999
Q ss_pred CccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcc-ccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcC
Q 038273 315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL-TRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFG 393 (623)
Q Consensus 315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 393 (623)
+|.+.+. +. ..++|+.|++++|++++. + .+ ++|+.|++++|++.+ +|.. +++|+.|++++|++++
T Consensus 286 ~N~l~~l-~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 286 ENIFSGL-SE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE 351 (454)
T ss_dssp SSCCSEE-SC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CCccCcc-cC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence 9998652 21 136899999999999852 2 23 589999999999985 4543 6899999999999874
Q ss_pred CCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccc--cCCccccccccCCeeeCCCCcccccCCccCCC
Q 038273 394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG--EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN 471 (623)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (623)
+|. .+++|++|++++|++++ .+|..+.. | +.|.+.+.+|..
T Consensus 352 -lp~-------------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~--- 394 (454)
T 1jl5_A 352 -VPE-------------------------LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL--- 394 (454)
T ss_dssp -CCC-------------------------CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC-----------
T ss_pred -ccc-------------------------hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc---
Confidence 333 13589999999999997 56665543 2 235566566653
Q ss_pred CCCCcEEECCCCcccc--cCccccccCCCCCeeecccCcccccCCCCc
Q 038273 472 LKQVESLDVSYNNLNG--KIPPQLVELNVLAVFSVAHNNLSGKIPEWT 517 (623)
Q Consensus 472 l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~ 517 (623)
+++|+.|++++|++++ .+|. +++.|.+.+|.+.+..+.+.
T Consensus 395 ~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 395 PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp ------------------------------------------------
T ss_pred cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCH
Confidence 5789999999999986 4453 46777889998887766544
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=327.31 Aligned_cols=323 Identities=18% Similarity=0.178 Sum_probs=221.8
Q ss_pred CEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcC
Q 038273 165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSD 244 (623)
Q Consensus 165 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 244 (623)
+.++.+++.++ .+|..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45556666665 566543 34666666666666666566666666666666666666666666667777777777777
Q ss_pred CcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCC
Q 038273 245 NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY 324 (623)
Q Consensus 245 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 324 (623)
|+++...+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------ 145 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH------------------------ 145 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT------------------------
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh------------------------
Confidence 76665555556666777777777776666666666666667777666666553322
Q ss_pred CCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccc
Q 038273 325 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSL 404 (623)
Q Consensus 325 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 404 (623)
..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..+.++.....
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--- 222 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--- 222 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---
Confidence 12556677777777777777666666777777777777777777666667777777777777777665544432221
Q ss_pred cCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCc
Q 038273 405 HNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNN 484 (623)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 484 (623)
..+|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|+
T Consensus 223 -------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 223 -------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp -------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred -------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 1267777777777775444567777778888888887777777777777788888888888
Q ss_pred ccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 485 LNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 485 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+.+..|..+..+++|+.|++++|++++..+..+..+++|+.+++++||+.|+|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 77777777777778888888888777766666667777777888888887743
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-35 Score=311.79 Aligned_cols=190 Identities=21% Similarity=0.307 Sum_probs=94.9
Q ss_pred CCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccE
Q 038273 63 QHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY 142 (623)
Q Consensus 63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 142 (623)
+++++.|+++++.++ .+|. +..+++|++|++++|.+++..+ +.++++|++|++++|.+. .++. + ..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-h-cCCCCCCE
Confidence 455666666666655 4443 3456666666666666555433 555666666666666555 3333 2 22556666
Q ss_pred EecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEeccccc
Q 038273 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANY 222 (623)
Q Consensus 143 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 222 (623)
|++++|.+++.. . +.++++|++|++++|.+. .++. +..+++|++|++++ .+.+. ..+.++++|+.|++++|.
T Consensus 117 L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDID-P-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCG-G-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCh-H-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence 666666655332 1 556666666666666655 3432 34556666665542 22211 114444444455554444
Q ss_pred CccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273 223 CTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272 (623)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 272 (623)
+++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 4422 124444455555555554443322 333444444444444443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.1e-37 Score=318.01 Aligned_cols=376 Identities=19% Similarity=0.184 Sum_probs=257.4
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
.++......+...+..+..++++++|++|++++|.++ .+| . +..+++|++|++++|++++. .+..+++|++|++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~L 92 (457)
T 3bz5_A 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLAC 92 (457)
T ss_dssp HHHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred HHHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEEC
Confidence 4444444444444455566777888888888888887 455 2 47788888888888888764 2777888888888
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.+++ ++ +. .+++|++|++++|.+++ ++ +.++++|++|++++|+++ .++ +..+++|++|++++|...
T Consensus 93 s~N~l~~-~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 93 DSNKLTN-LD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp CSSCCSC-CC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCC
T ss_pred cCCCCce-ee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCcc
Confidence 8888773 44 33 36788888888888775 33 777888888888888877 454 356778888888877543
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 280 (623)
+.. .+..+++|+.|++++|++++. | +..+++|+.|++++|.+++. .++.+++|+.|++++|++.+. | +.
T Consensus 162 ~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~ 230 (457)
T 3bz5_A 162 TKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VT 230 (457)
T ss_dssp CCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred ccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--cc
Confidence 333 456677777777777777753 3 66777778888877777654 366777777777777777753 3 56
Q ss_pred CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEE
Q 038273 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYL 360 (623)
Q Consensus 281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 360 (623)
.+++|+.|++++|.+.+.. ...+++|+.+++++| +|+.|++++|...+.+| +..+++|+.|
T Consensus 231 ~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L 291 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKEL 291 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred ccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEE
Confidence 6777777777777776432 224455555555443 23445556665554444 3445666666
Q ss_pred EcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc
Q 038273 361 ILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE 440 (623)
Q Consensus 361 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 440 (623)
++++|...+.+|. ..++|+.+++++| ++|++|++++|++++.
T Consensus 292 ~Ls~n~~l~~l~~---~~~~L~~L~l~~~-----------------------------------~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 292 DVTHNTQLYLLDC---QAAGITELDLSQN-----------------------------------PKLVYLYLNNTELTEL 333 (457)
T ss_dssp CCTTCTTCCEEEC---TTCCCSCCCCTTC-----------------------------------TTCCEEECTTCCCSCC
T ss_pred ECCCCcccceecc---CCCcceEechhhc-----------------------------------ccCCEEECCCCccccc
Confidence 6666665544442 3344555555443 3888999999999874
Q ss_pred CCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCc
Q 038273 441 IPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWT 517 (623)
Q Consensus 441 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~ 517 (623)
+ +..+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|+.+++++|+++|.+|..+
T Consensus 334 -~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 334 -D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp -C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred -c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 3 8889999999999999985 35677788999998865 345667888999999999988654
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=319.65 Aligned_cols=319 Identities=21% Similarity=0.194 Sum_probs=189.8
Q ss_pred EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273 117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196 (623)
Q Consensus 117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 196 (623)
.++.+++.++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...|.++++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence 4555555555 5555433 35666666666666555556666666666666666665 44333445566666666666
Q ss_pred CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc
Q 038273 197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP 276 (623)
Q Consensus 197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (623)
|.+....+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 66655544555566666666666666665556666666666666666666666666666666666666666666665555
Q ss_pred ccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcccc
Q 038273 277 LEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTR 356 (623)
Q Consensus 277 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 356 (623)
..+..+++|+.|++++|.+.+..+. .|..+++|+.|++++|...+..+.......+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT------------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh------------------------hcccCcccceeeCCCCccccccCcccccCcc
Confidence 5566666666666666665533221 1444455555555555444444433333446
Q ss_pred CcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCc
Q 038273 357 LRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK 436 (623)
Q Consensus 357 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 436 (623)
|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+.. +++|+.|++++|.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------l~~L~~L~L~~n~ 283 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE----------------------LLRLQEIQLVGGQ 283 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT----------------------CTTCCEEECCSSC
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc----------------------cccCCEEECCCCc
Confidence 666666666666444455666666666666666665444333322 2255555555555
Q ss_pred ccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273 437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486 (623)
Q Consensus 437 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (623)
+++..|..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 55555666666777777777777777666666677777777777777765
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-35 Score=311.60 Aligned_cols=347 Identities=25% Similarity=0.359 Sum_probs=253.3
Q ss_pred CCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCE
Q 038273 87 NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKF 166 (623)
Q Consensus 87 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 166 (623)
.+++++.|++.++.+... + .+..+++|++|++++|.+. .+|. + ..+++|++|++++|.+++..+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 356888999998888663 3 4777888999999998888 5555 3 347789999998888885444 888888888
Q ss_pred EEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCc
Q 038273 167 LDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNN 246 (623)
Q Consensus 167 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 246 (623)
|++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|+.|+++ +.+.+. ..+..+++|+.|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 988888887 5655 56788888888888887653 246778888888886 334432 236777888888888887
Q ss_pred CccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCC
Q 038273 247 LYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT 326 (623)
Q Consensus 247 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 326 (623)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ + ..
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-------------------------~~ 238 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-------------------------GT 238 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-------------------------GG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-------------------------hh
Confidence 7643 346677777777777777765544 5566777777777766542 1 12
Q ss_pred ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 406 (623)
Q Consensus 327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 406 (623)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+..+ +.
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------ 306 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------ 306 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG------
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc------
Confidence 5566777778888777775544 6777788888888888775433 6777888888888887765433 21
Q ss_pred CCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273 407 NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486 (623)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (623)
.+++|+.|++++|.+++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 307 ----------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 307 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp ----------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 24578888888888876544 67788888888888888765 46778888888888888888
Q ss_pred ccCccccccCCCCCeeecccCccccc
Q 038273 487 GKIPPQLVELNVLAVFSVAHNNLSGK 512 (623)
Q Consensus 487 ~~~p~~~~~l~~L~~L~l~~N~l~~~ 512 (623)
+..| +..+++|+.|++++|++++.
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEEEECC
T ss_pred ccch--hhcCCCCCEEeccCCcccCC
Confidence 7666 77888888888888888763
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.7e-35 Score=305.04 Aligned_cols=358 Identities=18% Similarity=0.168 Sum_probs=172.7
Q ss_pred cccCCCCCcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCC
Q 038273 9 PFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENN 88 (623)
Q Consensus 9 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l 88 (623)
.++++++|++|++++|.+.+. +. +..+.+|++|++++|++++. | ++.+++|++|++++|.+++ ++ +.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~~---l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l 105 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-TG---IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPL 105 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-TT---GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-hh---hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCC
Confidence 345555555555555555432 11 11222555555555555442 2 4555555555555555552 33 3455
Q ss_pred CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEE
Q 038273 89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLD 168 (623)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 168 (623)
++|++|++++|++++. + +..+++|++|++++|.+++ ++ +. .+++|++|++++|...+.+ .+..+++|++|+
T Consensus 106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 5555555555555442 1 4455555555555555552 32 22 2345555555555322222 244455555555
Q ss_pred ccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc
Q 038273 169 LSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY 248 (623)
Q Consensus 169 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 248 (623)
+++|+++ .+| +..+++|++|++++|.+++. . ++.+++|+.|++++|+++
T Consensus 177 ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~---~------------------------l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 177 CSFNKIT-ELD---VSQNKLLNRLNCDTNNITKL---D------------------------LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp CCSSCCC-CCC---CTTCTTCCEEECCSSCCSCC---C------------------------CTTCTTCSEEECCSSCCS
T ss_pred CCCCccc-eec---cccCCCCCEEECcCCcCCee---c------------------------cccCCCCCEEECcCCccc
Confidence 5555554 333 23444455555554444432 2 444455555555555554
Q ss_pred cccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCcc
Q 038273 249 GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF 328 (623)
Q Consensus 249 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 328 (623)
+ +| +..+++|+.|++++|.+.+.. ...+++|+.|++++| +|+.+++++|...+.++ +.
T Consensus 226 ~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~---~~ 283 (457)
T 3bz5_A 226 E-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ---AE 283 (457)
T ss_dssp C-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE---CT
T ss_pred c-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc---cc
Confidence 4 22 444555555555555554332 233445555555443 23344445554444443 33
Q ss_pred CCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCC
Q 038273 329 NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG 408 (623)
Q Consensus 329 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~ 408 (623)
.+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++++. + +.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~-------- 336 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VS-------- 336 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CT--------
T ss_pred ccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cc--------
Confidence 456666666666655444442 2233443333322 4556666666665542 1 11
Q ss_pred CCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccccc
Q 038273 409 DNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGK 488 (623)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (623)
.+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|+.+++++|++++.
T Consensus 337 --------------~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ 389 (457)
T 3bz5_A 337 --------------HNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIA 389 (457)
T ss_dssp --------------TCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEE
T ss_pred --------------cCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEE
Confidence 13356666666666553 13445555666666543 2334455666666666666
Q ss_pred Ccccc
Q 038273 489 IPPQL 493 (623)
Q Consensus 489 ~p~~~ 493 (623)
+|..+
T Consensus 390 ip~~~ 394 (457)
T 3bz5_A 390 VSPDL 394 (457)
T ss_dssp CCTTC
T ss_pred cChhH
Confidence 66543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.6e-35 Score=298.54 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEe
Q 038273 138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLH 217 (623)
Q Consensus 138 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 217 (623)
++++.|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34555555555444333333444455555555555444 34333334444555555554444444444444444444444
Q ss_pred cccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccc
Q 038273 218 LDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295 (623)
Q Consensus 218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 295 (623)
+++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 444444433333334444444444444444444444444444444444444444432 122334444444444433
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-33 Score=286.49 Aligned_cols=334 Identities=19% Similarity=0.200 Sum_probs=231.4
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE
Q 038273 112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY 191 (623)
Q Consensus 112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 191 (623)
++++++|+++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 467778888877777 677776666778888888888888777778888888888888888887 666666677888888
Q ss_pred EEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccc
Q 038273 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271 (623)
Q Consensus 192 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 271 (623)
|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.+++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888888765555567888888888888888877777888889999999999888764 356678899999999887
Q ss_pred cccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhh
Q 038273 272 QGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI 351 (623)
Q Consensus 272 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 351 (623)
.+. ...++|+.|++++|.+..... ...++|+.|++++|.+++. .++
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~~~---------------------------~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVVRG---------------------------PVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEEEC---------------------------CCCSSCCEEECCSSCCCCC--GGG
T ss_pred ccc-----CCCCcceEEECCCCeeeeccc---------------------------cccccccEEECCCCCCccc--HHH
Confidence 632 344578888888887763211 1125677888888877753 467
Q ss_pred hccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEE
Q 038273 352 ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVD 431 (623)
Q Consensus 352 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 431 (623)
..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------------------------ 288 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN------------------------------------ 288 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE------------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC------------------------------------
Confidence 78888999999999888777888888888999888888876321
Q ss_pred ccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccc
Q 038273 432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSG 511 (623)
Q Consensus 432 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 511 (623)
..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++.. | +..+++|+.|++++|++.+
T Consensus 289 -----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 289 -----------LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -----------CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred -----------cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 11223344444455544444 2233344445555555555555432 1 3445555666666665554
Q ss_pred cCCCCccccCCCCCccccCCCCCCCC
Q 038273 512 KIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 512 ~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
.... ..+..+....+.+++..|.+
T Consensus 354 ~~~~--~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 354 NSLR--ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHHH--HHTTTCCTTTBCCCCSCCCT
T ss_pred hhHH--HHHHHHHhhcccccCceecc
Confidence 3221 12345555667778877743
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-34 Score=307.02 Aligned_cols=332 Identities=17% Similarity=0.184 Sum_probs=163.9
Q ss_pred CCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEe
Q 038273 138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLH 217 (623)
Q Consensus 138 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 217 (623)
++++.+++++|.+....+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+.++++|+.|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45666666666665444444555666666666666665 44444445566666666666666555555555566666666
Q ss_pred cccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCcccee
Q 038273 218 LDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISG 297 (623)
Q Consensus 218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 297 (623)
+++|.+++..+..|+.+++|++|++++|.+++..|..++.+++|++|++++|.+.+.. +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 6666655444444555666666666666665555555555666666666666555432 3344555555555555442
Q ss_pred eCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcC
Q 038273 298 TLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCR 377 (623)
Q Consensus 298 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 377 (623)
.. ..+.|+.|++++|.+..... . ..++|+.|++++|.+++ +.++..+++|+.|++++|.+.+..|..+..
T Consensus 207 l~----~~~~L~~L~ls~n~l~~~~~-~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 LA----IPIAVEELDASHNSINVVRG-P---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp EE----CCTTCSEEECCSSCCCEEEC-S---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cc----CCchhheeeccCCccccccc-c---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 11 12334444444444422111 1 01334444444444432 123333444444444444444333333444
Q ss_pred CCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCC
Q 038273 378 LKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFS 457 (623)
Q Consensus 378 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 457 (623)
+++|+.|++++|.+ ++ +|..+..+++|+.|+|+
T Consensus 277 l~~L~~L~Ls~N~l----------------------------------------------~~-l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 277 MQRLERLYISNNRL----------------------------------------------VA-LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CSSCCEEECTTSCC----------------------------------------------CE-EECSSSCCTTCCEEECC
T ss_pred ccCCCEEECCCCCC----------------------------------------------CC-CCcccccCCCCcEEECC
Confidence 44444444444333 32 22333344555555555
Q ss_pred CCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCC
Q 038273 458 HNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG 536 (623)
Q Consensus 458 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~ 536 (623)
+|.++ .+|..+..+++|+.|+|++|++.+.. +..+++|+.|++++|++.+.... ..+..+....+.+++..|+
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~ 382 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCK 382 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCC
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCC
Confidence 55555 33444445555555555555554321 34445555556666555543221 1233344445556666664
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-32 Score=275.59 Aligned_cols=302 Identities=20% Similarity=0.276 Sum_probs=174.8
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
+|++|++++|.+.. ++. +..+++|++|++++|.++ .++. +..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 45 ~L~~L~l~~~~i~~-~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 45 SITKLVVAGEKVAS-IQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117 (347)
T ss_dssp TCSEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred cccEEEEeCCcccc-chh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEEC
Confidence 56666666665543 232 555666666666666655 3443 35566666666666655542 23555566666666
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.+. .++. ...+++|++|++++|..... +..+..+++|++|++++|.+. .++. +..+++|++|++++|.+.
T Consensus 118 ~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 118 NEDNIS-DISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp TTSCCC-CCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCC
T ss_pred cCCccc-Cchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccc
Confidence 666555 3333 22245566666665543322 223555555666666555555 3333 344555555555555554
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 280 (623)
+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+.
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence 3322 4445555555555554443222 4444555555555554443222 44444444555444444432 2334
Q ss_pred CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEE
Q 038273 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYL 360 (623)
Q Consensus 281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 360 (623)
. +++|++|++++|.+.+. ..+..+++|++|++++|++++..+..+..+++|+.|
T Consensus 263 ~-----------------------l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 263 D-----------------------LTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp T-----------------------CTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred c-----------------------CCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 4 44555555555554332 237788999999999999998888899999999999
Q ss_pred EcccccccccCchhhcCCCCCCEEEccCCcCc
Q 038273 361 ILANNNLEGEVPNQLCRLKQLRLIDLSNNNLF 392 (623)
Q Consensus 361 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 392 (623)
++++|++.+..| +..+++|+.|++++|+++
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999986655 888999999999999875
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-33 Score=280.11 Aligned_cols=260 Identities=32% Similarity=0.523 Sum_probs=201.4
Q ss_pred CCCcEEECcCCcCcc--ccchhccCCCCCCEEECcc-ccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEE
Q 038273 235 SPLEGLYMSDNNLYG--NIPAWLGNLSSLNDIMMAI-NHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQV 311 (623)
Q Consensus 235 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 311 (623)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+.+|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---------- 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---------- 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----------
Confidence 356666666666665 5566666666666666663 666666666666666666666666666533332
Q ss_pred EccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCC-CCCEEEccCCc
Q 038273 312 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLK-QLRLIDLSNNN 390 (623)
Q Consensus 312 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 390 (623)
. +..+++|++|++++|.+++..|..+..+++|++|++++|++.+..|..+..++ +|+.|++++|+
T Consensus 120 -------------~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 120 -------------F-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp -------------G-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred -------------H-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 1 45566666677777766666777777777788888888877777777777776 78888888888
Q ss_pred CcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCC
Q 038273 391 LFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFS 470 (623)
Q Consensus 391 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 470 (623)
+.+..|..+... .|+.|++++|.+++..|..+..+++|+.|++++|.+++..|. +.
T Consensus 186 l~~~~~~~~~~l-----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~ 241 (313)
T 1ogq_A 186 LTGKIPPTFANL-----------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG 241 (313)
T ss_dssp EEEECCGGGGGC-----------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC
T ss_pred eeccCChHHhCC-----------------------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc
Confidence 777776655432 378888888888888888999999999999999999876665 88
Q ss_pred CCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCC
Q 038273 471 NLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 543 (623)
Q Consensus 471 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~ 543 (623)
.+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++.+||++|+.+++.|.
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCCC
Confidence 8999999999999999999999999999999999999999999987 78999999999999999998887773
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.1e-32 Score=274.67 Aligned_cols=307 Identities=22% Similarity=0.360 Sum_probs=198.5
Q ss_pred ccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCC
Q 038273 157 SIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP 236 (623)
Q Consensus 157 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 236 (623)
.+..+++|++|+++++.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. +.+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 3456788888888888887 6665 4568888888888888876544 77788888888888877743 35777888
Q ss_pred CcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCc
Q 038273 237 LEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKN 316 (623)
Q Consensus 237 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 316 (623)
|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|+.|++++|.+.+.. .
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~--------------- 172 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT-P--------------- 172 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-G---------------
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch-h---------------
Confidence 8888888887765433 6777778888887775543333 3667777777777777665221 1
Q ss_pred cccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCC
Q 038273 317 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIP 396 (623)
Q Consensus 317 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 396 (623)
+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+++..+
T Consensus 173 ----------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 173 ----------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp ----------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred ----------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence 3445556666666665553322 5555666666666666553322 5556666666666665543222
Q ss_pred CccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCc
Q 038273 397 GCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVE 476 (623)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 476 (623)
+. .+++|++|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|+
T Consensus 239 --~~----------------------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 239 --LA----------------------NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp --GT----------------------TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred --hh----------------------cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 11 234666666666666532 3466666777777777776643 3466667777
Q ss_pred EEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCC
Q 038273 477 SLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPL 533 (623)
Q Consensus 477 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~ 533 (623)
.|++++|++.+..|..+..+++|++|++++|++++..| +..+++|+.+++++|+.
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 77777777766666666777777777777777766555 55667777777777664
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-32 Score=294.58 Aligned_cols=311 Identities=21% Similarity=0.233 Sum_probs=238.3
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE
Q 038273 112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY 191 (623)
Q Consensus 112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 191 (623)
+++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 456677777777766 667666666777888888888777766777778888888888888777 566666677788888
Q ss_pred EEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccc
Q 038273 192 LVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHL 271 (623)
Q Consensus 192 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 271 (623)
|++++|.+.+..+..+.++++|+.|++++|.+++..|..|..+++|+.|++++|.+++.. ++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 888888777665556677788888888888887777777888888888888888877542 45567888888888877
Q ss_pred cccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhh
Q 038273 272 QGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI 351 (623)
Q Consensus 272 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 351 (623)
.+ +...++|+.|++++|.+....+.. .++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 63 234567888888888887544332 36899999999988663 348889999999999999999889999
Q ss_pred hccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEE
Q 038273 352 ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVD 431 (623)
Q Consensus 352 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 431 (623)
..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~--------------------------------------- 314 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL--------------------------------------- 314 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC---------------------------------------
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC---------------------------------------
Confidence 999999999999999985 4555666777777777777664
Q ss_pred ccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccccc
Q 038273 432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGK 488 (623)
Q Consensus 432 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (623)
.+|..+..+++|+.|++++|.+++.. +..+++|+.|++++|++.+.
T Consensus 315 --------~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 315 --------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp --------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred --------ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 44556677888888888888887542 66778888999999988743
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.8e-30 Score=258.20 Aligned_cols=244 Identities=26% Similarity=0.325 Sum_probs=170.2
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
++++++++++.+. .+|..+. +++++|++++|.++ .++...+.++++|++|++++|++++..|..+.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7888888888876 4555443 57888888888888 455545678888888888888888877888888888888888
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCc-ccchHHhhCCCCCCEEEcccCcC
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG-EIPEHLVIGCFNLEYLVLSENSL 199 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l 199 (623)
++|.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.. .+....+.++++|++|++++|.+
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 888887 6776654 578888888888876666677788888888888887752 13334456677777777777776
Q ss_pred ccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccc
Q 038273 200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279 (623)
Q Consensus 200 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 279 (623)
... +..+ .++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. .+|..+
T Consensus 184 ~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TTI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CSC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred ccC-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 642 2222 156666666666666655666666666666666666666655556666666666666666665 445555
Q ss_pred cCCCCCcEEeCcCccce
Q 038273 280 CQLNYLEILDLSENNIS 296 (623)
Q Consensus 280 ~~l~~L~~L~l~~n~~~ 296 (623)
..+++|+.|++++|+++
T Consensus 260 ~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp TTCSSCCEEECCSSCCC
T ss_pred ccCCCcCEEECCCCcCC
Confidence 56666666666666555
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=9.7e-31 Score=261.66 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=35.9
Q ss_pred cCCccccccccCCeeeCCCCcccccCCccCCC------CCCCcEEECCCCccc--ccCccccccCCCCCeeecccC
Q 038273 440 EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN------LKQVESLDVSYNNLN--GKIPPQLVELNVLAVFSVAHN 507 (623)
Q Consensus 440 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~l~~N 507 (623)
.+|..+..+++|+.|++++|.+++..+..|.. .++|+.|++++|++. ...|..+..++.|+.+++++|
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 34444555555555666655555554444433 245566666666655 445555566666666666655
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-34 Score=304.13 Aligned_cols=308 Identities=18% Similarity=0.124 Sum_probs=161.3
Q ss_pred CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcC----cCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCC--
Q 038273 65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSG----PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFP-- 138 (623)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~-- 138 (623)
+|++||+++|.+++.....++..+++|++|++++|+++. .++..+..+++|++|++++|.+.+..+..+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 455666666655532223334556666666666666542 12334455566666666666665433444444444
Q ss_pred --CccEEecccCcccc----cCCcccCCCCCCCEEEccCCcCCcccchHHh----hCCCCCCEEEcccCcCcccc----c
Q 038273 139 --RLVYLNLSRNDFNG----SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV----IGCFNLEYLVLSENSLHGQL----F 204 (623)
Q Consensus 139 --~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~----~ 204 (623)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ...++|++|++++|.++... +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 57788888777763 3466777788888888888877633333222 22456777777777776533 3
Q ss_pred cccccCCCCCEEecccccCccccCccCc-----CCCCCcEEECcCCcCccc----cchhccCCCCCCEEECccccccccc
Q 038273 205 YKKIYLRKLARLHLDANYCTGEIPKSLS-----NCSPLEGLYMSDNNLYGN----IPAWLGNLSSLNDIMMAINHLQGPI 275 (623)
Q Consensus 205 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~ 275 (623)
..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+....
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 3444556666666666665543222222 244666666666666542 3444555566666666666554321
Q ss_pred -----cccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchh
Q 038273 276 -----PLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW 350 (623)
Q Consensus 276 -----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 350 (623)
+..+..+++|+.|++++|.++.... ..++. .+..+++|++|++++|.+++..+..
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHHH
Confidence 1112234455555555554431100 00111 1333455555555555554332222
Q ss_pred hhcc-----ccCcEEEccccccccc----CchhhcCCCCCCEEEccCCcCc
Q 038273 351 IERL-----TRLRYLILANNNLEGE----VPNQLCRLKQLRLIDLSNNNLF 392 (623)
Q Consensus 351 ~~~l-----~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 392 (623)
+... ++|+.|++++|.+++. ++..+..+++|+.|++++|.+.
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 2221 3555555555555433 2333444555555555555544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.7e-30 Score=257.33 Aligned_cols=289 Identities=20% Similarity=0.293 Sum_probs=138.5
Q ss_pred CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEE
Q 038273 114 HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLV 193 (623)
Q Consensus 114 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 193 (623)
+++.++++++.+. .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEE
Confidence 5666666666655 5554432 35666666666665544445555555555555555555 33222234445555555
Q ss_pred cccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccc
Q 038273 194 LSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQG 273 (623)
Q Consensus 194 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 273 (623)
+++|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 107 Ls~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 107 LSKNQLKE-------------------------LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CCSSCCSB-------------------------CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCCcCCc-------------------------cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 55444431 222111 455555555555554444455555555555555555532
Q ss_pred --cccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhh
Q 038273 274 --PIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI 351 (623)
Q Consensus 274 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 351 (623)
..+..+..+++|+.|++++|.+.. +|. . + .++|++|++++|.+++..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~-----------------------~-~--~~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITT-IPQ-----------------------G-L--PPSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCS-CCS-----------------------S-C--CTTCSEEECTTSCCCEECTGGG
T ss_pred cCcChhhccCCCCcCEEECCCCcccc-CCc-----------------------c-c--cccCCEEECCCCcCCccCHHHh
Confidence 334445555555555555555431 111 1 0 1334444444444443333344
Q ss_pred hccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEE
Q 038273 352 ERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVD 431 (623)
Q Consensus 352 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 431 (623)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---------------------------------------- 252 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL---------------------------------------- 252 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC----------------------------------------
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC----------------------------------------
Confidence 4444444444444444433333333344444444443333
Q ss_pred ccCCcccccCCccccccccCCeeeCCCCcccccCCccCCC------CCCCcEEECCCCcccc--cCccccccCCCCCeee
Q 038273 432 LSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSN------LKQVESLDVSYNNLNG--KIPPQLVELNVLAVFS 503 (623)
Q Consensus 432 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~ 503 (623)
+ .+|..+..+++|++|++++|.+++..+..|.. .++++.|++++|.+.. ..|..|..+.+++.++
T Consensus 253 ------~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 253 ------V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp ------S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred ------c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence 3 33444455555555555555555444444432 2455666666666542 3445555566666666
Q ss_pred cccCc
Q 038273 504 VAHNN 508 (623)
Q Consensus 504 l~~N~ 508 (623)
+++|+
T Consensus 326 L~~N~ 330 (330)
T 1xku_A 326 LGNYK 330 (330)
T ss_dssp C----
T ss_pred ecccC
Confidence 66553
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.8e-34 Score=301.69 Aligned_cols=363 Identities=17% Similarity=0.138 Sum_probs=211.5
Q ss_pred CCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccc----cCCcccCCCCCCCEEEccCCcCCcccchHHhhCCC-
Q 038273 113 WHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCF- 187 (623)
Q Consensus 113 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~- 187 (623)
++|++|++++|.+++.....++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567777777776633333334446777888887777763 23555667777888888887776444445555555
Q ss_pred ---CCCEEEcccCcCcc----ccccccccCCCCCEEecccccCccccCcc-----CcCCCCCcEEECcCCcCcccc----
Q 038273 188 ---NLEYLVLSENSLHG----QLFYKKIYLRKLARLHLDANYCTGEIPKS-----LSNCSPLEGLYMSDNNLYGNI---- 251 (623)
Q Consensus 188 ---~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~---- 251 (623)
+|++|++++|.+.. ..+..+..+++|++|++++|.+++..+.. ....++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777764 33556667777777777777765432222 223456777777777766533
Q ss_pred chhccCCCCCCEEECcccccccccccccc-----CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCC
Q 038273 252 PAWLGNLSSLNDIMMAINHLQGPIPLEFC-----QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGT 326 (623)
Q Consensus 252 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 326 (623)
+..+..+++|++|++++|.+....+..+. ..++|+.|++++|.+...... .++. .
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-I 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-H
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-H
Confidence 44455667777777777776543333332 245666666666655421000 0011 1
Q ss_pred ccCCCceeEEeCCCCcCCCCCc-----hhhhccccCcEEEccccccccc----CchhhcCCCCCCEEEccCCcCcCCCCC
Q 038273 327 FFNRSSIVTLDLSYNSFSGNIP-----YWIERLTRLRYLILANNNLEGE----VPNQLCRLKQLRLIDLSNNNLFGQIPG 397 (623)
Q Consensus 327 ~~~~~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~ 397 (623)
+..+++|++|++++|.+++... ..+..+++|+.|++++|.++.. ++..+..+++|++|++++|.+....+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 3344555666666655543221 1112355666666666665532 344455566666666666665432222
Q ss_pred ccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc----CCccccccccCCeeeCCCCcccccCCccCCC--
Q 038273 398 CLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE----IPPQIGKLTSIRALNFSHNNLTGVIPVSFSN-- 471 (623)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-- 471 (623)
.+...- ....++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 303 ~l~~~l-----------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 303 LLCETL-----------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp HHHHHH-----------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred HHHHHh-----------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 111100 01123666666666666643 3455566677788888877776544433321
Q ss_pred ---CCCCcEEECCCCcccc----cCccccccCCCCCeeecccCccccc
Q 038273 472 ---LKQVESLDVSYNNLNG----KIPPQLVELNVLAVFSVAHNNLSGK 512 (623)
Q Consensus 472 ---l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~ 512 (623)
.++|++|++++|++++ .+|..+..+++|++|++++|+++..
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 5678888888887775 5667777777888888888877653
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.4e-31 Score=261.97 Aligned_cols=248 Identities=27% Similarity=0.418 Sum_probs=128.7
Q ss_pred cccEEEccCCCCCC--CCCcccCCCCCCcEEEccC-CCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCE
Q 038273 41 QLESVKLSGSGIHA--TFPKFLYNQHDLEYVDFSD-SNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDT 117 (623)
Q Consensus 41 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 117 (623)
++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+ .++++|++|++++|++++..|..+.++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45666666666655 5555566666666666663 55555555543 55566666666666555555555555555555
Q ss_pred EEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCC-CCCEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273 118 LHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMN-SLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196 (623)
Q Consensus 118 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 196 (623)
|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|..+ ..+. |++|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcC
Confidence 555555555555554444 45555555555555555555555554 55555555555554444433 2333 55555555
Q ss_pred CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccc
Q 038273 197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP 276 (623)
Q Consensus 197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (623)
|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|.+++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 555444444444455555555555544433332 3444444444444444444444444444444444444444444444
Q ss_pred ccccCCCCCcEEeCcCcc
Q 038273 277 LEFCQLNYLEILDLSENN 294 (623)
Q Consensus 277 ~~~~~l~~L~~L~l~~n~ 294 (623)
.. ..+++|+.+++++|+
T Consensus 286 ~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CS-TTGGGSCGGGTCSSS
T ss_pred CC-ccccccChHHhcCCC
Confidence 33 344444444444444
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.2e-30 Score=254.92 Aligned_cols=243 Identities=25% Similarity=0.330 Sum_probs=160.9
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
++++++++++.+. .+|..+. ++|++|++++|.++ .++...+.++++|++|++++|++++..+..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6788888877775 4455443 57888888888777 444444577788888888888877777777777888888888
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCc-ccchHHhhCCCCCCEEEcccCcC
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG-EIPEHLVIGCFNLEYLVLSENSL 199 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l 199 (623)
++|.+. .+|..++ ++|++|++++|.++...+..+.++++|++|++++|.++. .+....+..+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888777 6666554 577777777777776555667777777777777777751 1333333444 677777777766
Q ss_pred ccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccc
Q 038273 200 HGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEF 279 (623)
Q Consensus 200 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 279 (623)
.+ .|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+. .+|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 54 222221 56666666666666555566666666666666666666655556666666666666666665 444455
Q ss_pred cCCCCCcEEeCcCccce
Q 038273 280 CQLNYLEILDLSENNIS 296 (623)
Q Consensus 280 ~~l~~L~~L~l~~n~~~ 296 (623)
..+++|+.|++++|.++
T Consensus 261 ~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp GGCTTCCEEECCSSCCC
T ss_pred hcCccCCEEECCCCCCC
Confidence 56666666666666555
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=258.25 Aligned_cols=249 Identities=23% Similarity=0.276 Sum_probs=150.2
Q ss_pred CEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCc
Q 038273 214 ARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSEN 293 (623)
Q Consensus 214 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 293 (623)
+.++..+..++ .+|..+. ++++.|++++|++.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444444444 3333332 45666666666666555555666666666666666655555555555555555555555
Q ss_pred cceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEccccc-ccccCc
Q 038273 294 NISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNN-LEGEVP 372 (623)
Q Consensus 294 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 372 (623)
+++ .++...|..+++|++|++++|.+....+..+..+++|+.|++++|. +....+
T Consensus 123 ~l~------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 123 RLT------------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CCS------------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred cCC------------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 543 1122224445555555555555554444455555555555555533 332333
Q ss_pred hhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCC
Q 038273 373 NQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIR 452 (623)
Q Consensus 373 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 452 (623)
..+..+++|+.|++++|.++ .+| .+..+++|+
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~-----------------------------------------------~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLR-----------------------------------------------EIP-NLTPLIKLD 210 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCS-----------------------------------------------SCC-CCTTCSSCC
T ss_pred chhhcccccCeecCCCCcCc-----------------------------------------------ccc-ccCCCcccC
Confidence 34555555555555555543 222 255666777
Q ss_pred eeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCC
Q 038273 453 ALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNP 532 (623)
Q Consensus 453 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np 532 (623)
.|++++|.+++..|..|.++++|+.|+|++|++.+..+..|..+++|+.|++++|++++..+..+..+++|+.+++++||
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777667777777788888888
Q ss_pred CCCCC
Q 038273 533 LLCGK 537 (623)
Q Consensus 533 ~~C~~ 537 (623)
|.|+|
T Consensus 291 ~~CdC 295 (440)
T 3zyj_A 291 WNCNC 295 (440)
T ss_dssp EECSS
T ss_pred ccCCC
Confidence 88854
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-28 Score=257.01 Aligned_cols=232 Identities=23% Similarity=0.228 Sum_probs=133.8
Q ss_pred CCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEcc
Q 038273 235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314 (623)
Q Consensus 235 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 314 (623)
++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|.+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 137 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV----------------- 137 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-----------------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-----------------
Confidence 345555555555555445555555555555555555554444445555555555555544431
Q ss_pred CccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEccccc-ccccCchhhcCCCCCCEEEccCCcCcC
Q 038273 315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNN-LEGEVPNQLCRLKQLRLIDLSNNNLFG 393 (623)
Q Consensus 315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 393 (623)
++...|..+++|++|++++|++....+..+..+++|+.|++++|. +....+..+..+++|+.|++++|++++
T Consensus 138 -------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 138 -------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp -------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred -------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 112224445555555555555554444445555555555555532 332223345555555555555555432
Q ss_pred CCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCC
Q 038273 394 QIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLK 473 (623)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 473 (623)
+| .+..+++|+.|++++|.+++..|..|.+++
T Consensus 211 -----------------------------------------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 211 -----------------------------------------------MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp -----------------------------------------------CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred -----------------------------------------------cc-cccccccccEEECcCCcCcccCcccccCcc
Confidence 12 245566677777777777766667777777
Q ss_pred CCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273 474 QVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP 538 (623)
Q Consensus 474 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~ 538 (623)
+|+.|++++|++.+..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|||.|+|.
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 77777777777776666777777777777777777776666666667777777777777777553
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=248.83 Aligned_cols=280 Identities=19% Similarity=0.147 Sum_probs=167.9
Q ss_pred CCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEE
Q 038273 161 MNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL 240 (623)
Q Consensus 161 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 240 (623)
|+.....+++++.++ .+|..+ .++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455666667766 666654 3467777777777766555566677777777777777776666677777777777
Q ss_pred ECcCCcCccccchhccCCCCCCEEECcccccccccc-ccccCCCCCcEEeCcCcc-ceeeCCCCCCCCcccEEEccCccc
Q 038273 241 YMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP-LEFCQLNYLEILDLSENN-ISGTLPSCSSHSTIQQVHLSKNML 318 (623)
Q Consensus 241 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~l 318 (623)
++++|.+++..+..++.+++|++|++++|.+.+... ..+..+++|+.|++++|. +....
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------- 166 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ------------------- 166 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-------------------
Confidence 777777776555557777777777777777764433 356677777777777763 33222
Q ss_pred cccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCc
Q 038273 319 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGC 398 (623)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 398 (623)
...|..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 167 -----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 167 -----RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp -----TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred -----HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 222555566666666666666555566666666666666666665333333444666666666666665443322
Q ss_pred cccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccc----cCCccccccccCCeeeCCCCcccccCCccCCCCCC
Q 038273 399 LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTG----EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQ 474 (623)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 474 (623)
+... ...+.++.++++++.+.+ .+|..+..+++|+.|++++|.++.+.+..|..+++
T Consensus 242 l~~~-------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 302 (353)
T 2z80_A 242 LSTG-------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302 (353)
T ss_dssp ------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccc-------------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCC
Confidence 2110 112345555555555443 24455566666666666666666443334566666
Q ss_pred CcEEECCCCcccc
Q 038273 475 VESLDVSYNNLNG 487 (623)
Q Consensus 475 L~~L~Ls~n~l~~ 487 (623)
|++|++++|++.+
T Consensus 303 L~~L~L~~N~~~~ 315 (353)
T 2z80_A 303 LQKIWLHTNPWDC 315 (353)
T ss_dssp CCEEECCSSCBCC
T ss_pred CCEEEeeCCCccC
Confidence 6666666666653
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-30 Score=281.93 Aligned_cols=380 Identities=12% Similarity=0.025 Sum_probs=193.4
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhcCCC-ccEEecccCc-ccc-cCCcccCCCCCCCEEEccCCcCCcccc---hHHhhC
Q 038273 112 HWHLDTLHVSKNFFQGNIPLEIGVYFPR-LVYLNLSRND-FNG-SIPSSIGDMNSLKFLDLSHNQLTGEIP---EHLVIG 185 (623)
Q Consensus 112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~L~~n~-i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 185 (623)
+++|++|++++|.+.+..+..+...+++ |++|++++|. ++. ..+....++++|++|++++|.+++.-. ..+...
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 4445555555444443333333332223 5555554443 110 011112244455555555554432211 112234
Q ss_pred CCCCCEEEcccCcCcc----ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc---cccchhccCC
Q 038273 186 CFNLEYLVLSENSLHG----QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY---GNIPAWLGNL 258 (623)
Q Consensus 186 l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l 258 (623)
+++|++|++++|.+.+ ..+..+.++++|+.|++++|.+.+ .+..+..+++|+.|+++..... ...+..+..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 4555555555554431 222223344555555555544442 2334444455555555432111 1122334444
Q ss_pred CCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCC--CCCCCcccEEEccCccccccCCCCCccCCCceeEE
Q 038273 259 SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPS--CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 336 (623)
Q Consensus 259 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 336 (623)
++|+.++++++... ..+..+..+++|+.|++++|.+...... ...+++|+.|++++ .+...........+++|++|
T Consensus 270 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEE
Confidence 55555555443221 3333444455555555555543221110 12345555555552 22111111113456778888
Q ss_pred eCCC-----------CcCCCCC-chhhhccccCcEEEcccccccccCchhhcC-CCCCCEEEcc----CCcCcCCCCC-c
Q 038273 337 DLSY-----------NSFSGNI-PYWIERLTRLRYLILANNNLEGEVPNQLCR-LKQLRLIDLS----NNNLFGQIPG-C 398 (623)
Q Consensus 337 ~L~~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~~~-~ 398 (623)
++++ +.+++.. +.....+++|+.|+++.+.+++..+..+.. +++|+.|+++ .|.+++...+ .
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 8873 4454322 223455788888888877777665555554 7888888886 4444432110 0
Q ss_pred cccccccCCCCCCCCCCCccccCCCCCCccEEEccCCc--ccccCCcccc-ccccCCeeeCCCCccccc-CCccCCCCCC
Q 038273 399 LDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNK--LTGEIPPQIG-KLTSIRALNFSHNNLTGV-IPVSFSNLKQ 474 (623)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 474 (623)
+.. ....+++|+.|++++|. +++..+..+. .+++|++|++++|.+++. .+..+.++++
T Consensus 428 ~~~------------------~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 428 VRS------------------LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp HHH------------------HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred HHH------------------HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 000 00124588888887543 5544444443 378899999999988753 3445678899
Q ss_pred CcEEECCCCccccc-CccccccCCCCCeeecccCccccc
Q 038273 475 VESLDVSYNNLNGK-IPPQLVELNVLAVFSVAHNNLSGK 512 (623)
Q Consensus 475 L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~ 512 (623)
|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 99999999997644 344456789999999999998754
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=248.57 Aligned_cols=281 Identities=17% Similarity=0.138 Sum_probs=158.5
Q ss_pred CCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEE
Q 038273 186 CFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIM 265 (623)
Q Consensus 186 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 265 (623)
|+.....+.+++.++.. |..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 44444556666655532 33222 3566666666666655555566666666666666666655555566666666666
Q ss_pred CccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCC-CCccCCCceeEEeCCCC-cC
Q 038273 266 MAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKY-GTFFNRSSIVTLDLSYN-SF 343 (623)
Q Consensus 266 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~L~~n-~l 343 (623)
+++|.+.+..+..+..+++|++|++++|++. .++. ..+..+++|++|++++| .+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK------------------------TLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS------------------------SSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCc------------------------ccCchhhhccCCCCcEEECCCCccc
Confidence 6666666544444555666666666555543 1222 23666677777777777 35
Q ss_pred CCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCC
Q 038273 344 SGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKP 423 (623)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 423 (623)
.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------- 220 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV---------------------- 220 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH----------------------
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh----------------------
Confidence 5455556667777777777777776666666777777777777766654221111111
Q ss_pred CCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccc----cCccccccCCCC
Q 038273 424 LNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG----KIPPQLVELNVL 499 (623)
Q Consensus 424 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L 499 (623)
+++|+.|++++|.+++..+..+.. ....+.++.++++++.+.+ .+|+.+..+++|
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp TTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred cccccEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 235555555555554333222111 1123445555565555553 345566666677
Q ss_pred CeeecccCcccccCCCCccccCCCCCccccCCCCCCC
Q 038273 500 AVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG 536 (623)
Q Consensus 500 ~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~ 536 (623)
++|++++|+++...+..+..+++|+.+++++||+.|+
T Consensus 280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 7777777776643333345666777777777777773
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.8e-30 Score=281.60 Aligned_cols=159 Identities=11% Similarity=0.006 Sum_probs=100.8
Q ss_pred cCCCceeEEeCCCCcCCCCCchhhhc-cccCcEEEcc----ccccccc-----CchhhcCCCCCCEEEccCCc--CcCCC
Q 038273 328 FNRSSIVTLDLSYNSFSGNIPYWIER-LTRLRYLILA----NNNLEGE-----VPNQLCRLKQLRLIDLSNNN--LFGQI 395 (623)
Q Consensus 328 ~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~ 395 (623)
..+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. .+..+..+++|+.|++++|. +++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 34677888888777777655555554 7788888886 4555542 23345667888888886543 33222
Q ss_pred CCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc-CCccccccccCCeeeCCCCccccc-CCccCCCCC
Q 038273 396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE-IPPQIGKLTSIRALNFSHNNLTGV-IPVSFSNLK 473 (623)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 473 (623)
+..+. ..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++. .+.....++
T Consensus 455 ~~~~~---------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 455 LSYIG---------------------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp HHHHH---------------------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred HHHHH---------------------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 21111 1245788888888887752 344456778888888888887643 333445678
Q ss_pred CCcEEECCCCcccccCcccc-ccCCCCCeeecccC
Q 038273 474 QVESLDVSYNNLNGKIPPQL-VELNVLAVFSVAHN 507 (623)
Q Consensus 474 ~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~N 507 (623)
+|++|++++|+++......+ ..++.+....+..+
T Consensus 514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 88889998888775432222 34566666555544
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1e-27 Score=236.90 Aligned_cols=249 Identities=22% Similarity=0.276 Sum_probs=130.7
Q ss_pred CEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc--cchhccCCCCCCEEECc
Q 038273 190 EYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN--IPAWLGNLSSLNDIMMA 267 (623)
Q Consensus 190 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~ 267 (623)
+.++.+++.++.. |..+ .++|+.|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3455555555432 2222 24566666666666544444455666666666666655422 23444455555555555
Q ss_pred cccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCC
Q 038273 268 INHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 347 (623)
Q Consensus 268 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 347 (623)
+|.+.. .+..+..+++|+.|++++|.+. +..+...+..+++|++|++++|.+.+..
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLK-----------------------QMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEE-----------------------SSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCccc-----------------------ccccchhhhhccCCCEEECCCCcCCccc
Confidence 555552 3334455555555555555443 2212123555666666666666666555
Q ss_pred chhhhccccCcEEEcccccccc-cCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCC
Q 038273 348 PYWIERLTRLRYLILANNNLEG-EVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNK 426 (623)
Q Consensus 348 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 426 (623)
+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|++.+..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------------------------- 191 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS------------------------------- 191 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-------------------------------
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC-------------------------------
Confidence 5556666666666666666654 34555556666666666666555433
Q ss_pred ccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCC-CCCeeecc
Q 038273 427 MYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELN-VLAVFSVA 505 (623)
Q Consensus 427 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~ 505 (623)
|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..+..++ +|++|+++
T Consensus 192 ---------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 192 ---------------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp ---------------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred ---------------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 34444444555555555555544444445555555555555555544444444442 45555555
Q ss_pred cCcccc
Q 038273 506 HNNLSG 511 (623)
Q Consensus 506 ~N~l~~ 511 (623)
+|++++
T Consensus 257 ~N~~~~ 262 (306)
T 2z66_A 257 QNDFAC 262 (306)
T ss_dssp TCCEEC
T ss_pred CCCeec
Confidence 555543
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.4e-27 Score=234.27 Aligned_cols=281 Identities=22% Similarity=0.223 Sum_probs=185.3
Q ss_pred cEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCC--CCChhhhhcCCCccEEe
Q 038273 67 EYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQG--NIPLEIGVYFPRLVYLN 144 (623)
Q Consensus 67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~ 144 (623)
+.++.+++.++ .+|..+ .++|++|++++|+++...+..+.++++|++|++++|.+.. .+|..+.. +++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEE
Confidence 35555555555 555432 2466666666666665444456666666666666666651 12444444 67888888
Q ss_pred cccCcccccCCcccCCCCCCCEEEccCCcCCcccch-HHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccC
Q 038273 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPE-HLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYC 223 (623)
Q Consensus 145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 223 (623)
+++|.++ .+|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 8888777 45666778888888888888877 4543 4556778888888888887777777777778888888888877
Q ss_pred cc-ccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCC
Q 038273 224 TG-EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSC 302 (623)
Q Consensus 224 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 302 (623)
++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 241 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ- 241 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS-
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH-
Confidence 65 5677778888888888888888777777788888888888888888766666677777777777777777643332
Q ss_pred CCCCcccEEEccCccccccCCCCCccCC-CceeEEeCCCCcCCCCCc--hhhhccccCcEEEcccccccccCchhhcCC
Q 038273 303 SSHSTIQQVHLSKNMLYGPLKYGTFFNR-SSIVTLDLSYNSFSGNIP--YWIERLTRLRYLILANNNLEGEVPNQLCRL 378 (623)
Q Consensus 303 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 378 (623)
. +..+ ++|++|++++|++.+.-. .....+...+.+.+..+.+....|..+.+.
T Consensus 242 ----------------------~-~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 242 ----------------------E-LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp ----------------------S-CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred ----------------------H-HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 1 3344 366777777776654321 112223334444555555655555555443
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-26 Score=242.21 Aligned_cols=248 Identities=23% Similarity=0.236 Sum_probs=155.1
Q ss_pred ccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273 42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS 121 (623)
Q Consensus 42 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 121 (623)
.+.++.++.+++ .+|..+. +++++|++++|.+++ ++...|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 455666666554 3444332 466777777776663 333334666677777777776666666666667777777777
Q ss_pred CCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273 122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201 (623)
Q Consensus 122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 201 (623)
+|.++ .+|...+..+++|++|++++|.++...+..|.++++|++|++++|...+.++...+.++++|++|++++|.+.+
T Consensus 132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 77666 55555444466677777777766655555666677777777766433336666656666667777776666654
Q ss_pred ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273 202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ 281 (623)
Q Consensus 202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 281 (623)
. ..+..+++|+.|++++|.+++..|..|.++++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..+..
T Consensus 211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 3 23555666666666666666665666666666666666666666666666666666666666666666555555666
Q ss_pred CCCCcEEeCcCccce
Q 038273 282 LNYLEILDLSENNIS 296 (623)
Q Consensus 282 l~~L~~L~l~~n~~~ 296 (623)
+++|+.|++++|.+.
T Consensus 289 l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 289 LRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEccCCCcC
Confidence 666666666666554
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=240.55 Aligned_cols=248 Identities=23% Similarity=0.206 Sum_probs=141.1
Q ss_pred ccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273 42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS 121 (623)
Q Consensus 42 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 121 (623)
.+.++.++.++. .+|..+. +++++|++++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445555555554 3343332 45666666666665 3333334566666666666666655555556666666666666
Q ss_pred CCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273 122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201 (623)
Q Consensus 122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 201 (623)
+|.++ .+|...+..+++|++|++++|.++...+..|.++++|++|++++|...+.++...|.++++|++|++++|.+..
T Consensus 121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 66665 44444444455666666666666655555566666666666665433335555555556666666666665553
Q ss_pred ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273 202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ 281 (623)
Q Consensus 202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 281 (623)
. ..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..
T Consensus 200 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 I--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C--CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c--cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 2 13455556666666666666555555666666666666666666555555666666666666666665555555555
Q ss_pred CCCCcEEeCcCccce
Q 038273 282 LNYLEILDLSENNIS 296 (623)
Q Consensus 282 l~~L~~L~l~~n~~~ 296 (623)
+++|+.|++++|.+.
T Consensus 278 l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 278 LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEcCCCCcc
Confidence 566666666665554
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.2e-27 Score=230.74 Aligned_cols=224 Identities=21% Similarity=0.199 Sum_probs=134.7
Q ss_pred cEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC
Q 038273 43 ESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK 122 (623)
Q Consensus 43 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 122 (623)
++++.+++.+. .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56677766665 334332 356777777777776 45544456777777777777777766666777777777777777
Q ss_pred CC-CCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273 123 NF-FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201 (623)
Q Consensus 123 n~-l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 201 (623)
|. +. .++...+..+++|++|++++|.+++..+..+.++++|++|++++|+++ .++...+..+++|++|++++|.+.+
T Consensus 90 n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 90 NAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccc
Confidence 75 54 443333333566777777777766655666666666777777666666 5555545556666666666666654
Q ss_pred ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273 202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272 (623)
Q Consensus 202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 272 (623)
..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 44444555555555555555555554555555555555555555555444444555555555555555443
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.4e-27 Score=232.18 Aligned_cols=232 Identities=19% Similarity=0.212 Sum_probs=132.7
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
++++|++++|++. .+|..+.++++|++|++++|.++ .+|..+ ..+++|++|++++|.++ .+|..+.++++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 4555555555554 34444445555555555555555 444433 44555555555555554 23444455555555555
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.+.+.+|..+... ..+..+.++++|++|++++|.++ .+|..+ ..+++|++|++++|.+.
T Consensus 158 ~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 158 RACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCC
T ss_pred CCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCC
Confidence 5544444444433210 00011223666666666666666 566553 45666666666666665
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 280 (623)
+ .+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 3 334566666666666666666666666666677777777777666666666677777777777777766666677777
Q ss_pred CCCCCcEEeCcCccc
Q 038273 281 QLNYLEILDLSENNI 295 (623)
Q Consensus 281 ~l~~L~~L~l~~n~~ 295 (623)
.+++|+.+++..+.+
T Consensus 299 ~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 299 QLPANCIILVPPHLQ 313 (328)
T ss_dssp GSCTTCEEECCGGGS
T ss_pred hccCceEEeCCHHHH
Confidence 777777777665544
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.3e-26 Score=228.57 Aligned_cols=224 Identities=23% Similarity=0.277 Sum_probs=165.9
Q ss_pred CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEE
Q 038273 89 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLD 168 (623)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 168 (623)
.+++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.. +++|++|++++|.++ .+|..+.++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 44444444444444 23333444445555555555544 44444433 345555555555554 3444555555555555
Q ss_pred ccCCcCCcccchHH--------hhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEE
Q 038273 169 LSHNQLTGEIPEHL--------VIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGL 240 (623)
Q Consensus 169 l~~n~l~~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 240 (623)
+++|.+.+.+|..+ +.++++|++|++++|.++ ..|..+..+++|+.|++++|.+++ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 55544444444433 346999999999999998 677889999999999999999995 66679999999999
Q ss_pred ECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEEccCccc
Q 038273 241 YMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVHLSKNML 318 (623)
Q Consensus 241 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~l 318 (623)
++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|++.+.+|... .+++++.+++..+.+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888766 689999999887654
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.1e-26 Score=226.94 Aligned_cols=225 Identities=25% Similarity=0.220 Sum_probs=149.6
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273 116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS 195 (623)
Q Consensus 116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 195 (623)
++++.+++.+. .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 45666666666 566544 247777777777777666666777777777777777776 5544445667777777777
Q ss_pred cCc-CccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccc
Q 038273 196 ENS-LHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP 274 (623)
Q Consensus 196 ~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 274 (623)
+|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+.+.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 775 5555566666667777777777776666666667777777777777777665555566667777777777766655
Q ss_pred ccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhcc
Q 038273 275 IPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL 354 (623)
Q Consensus 275 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 354 (623)
.+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPH------------------------AFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTT------------------------TTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHHHhcCccccCEEECCCCcccccCHh------------------------HccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 555566666666666666666533222 25556677777777777776555667777
Q ss_pred ccCcEEEcccccccc
Q 038273 355 TRLRYLILANNNLEG 369 (623)
Q Consensus 355 ~~L~~L~L~~n~l~~ 369 (623)
++|+.|++++|++..
T Consensus 225 ~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 225 RALQYLRLNDNPWVC 239 (285)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cccCEEeccCCCccC
Confidence 777777777777653
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-27 Score=236.82 Aligned_cols=262 Identities=18% Similarity=0.192 Sum_probs=173.7
Q ss_pred ecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273 217 HLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 217 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 333333333333333444555555555555555555555555555555555555554332 555566666666666555
Q ss_pred eeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhh-
Q 038273 297 GTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQL- 375 (623)
Q Consensus 297 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~- 375 (623)
+..+ .++|++|++++|.+.+..+ ..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+
T Consensus 94 ~l~~----~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 94 ELLV----GPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEE----CTTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cccC----CCCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 3321 2556666666666544322 225678888888888887777778888889999999988887666665
Q ss_pred cCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeee
Q 038273 376 CRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALN 455 (623)
Q Consensus 376 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 455 (623)
..+++|++|++++|.+++..+.. .+++|+.|++++|.+++ +|..+..+++|+.|+
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~~~------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKGQV------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEECCC------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred hccCcCCEEECCCCcCccccccc------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 46888999999988886542111 14578888888888884 444588888888888
Q ss_pred CCCCcccccCCccCCCCCCCcEEECCCCccc-ccCccccccCCCCCeeecccC-cccccCC
Q 038273 456 FSHNNLTGVIPVSFSNLKQVESLDVSYNNLN-GKIPPQLVELNVLAVFSVAHN-NLSGKIP 514 (623)
Q Consensus 456 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N-~l~~~~~ 514 (623)
+++|.++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.++++++ .+++..|
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 8888888 45667888888888888888888 677778888888888888854 4555444
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=6.3e-30 Score=277.57 Aligned_cols=233 Identities=20% Similarity=0.165 Sum_probs=125.1
Q ss_pred ccCCCCCCcEEEccCCCCCCcC---C-----------hHHhhCCCCCCEEEccCCcCcCcCCCCCC-CCCCCCEEEccCC
Q 038273 59 FLYNQHDLEYVDFSDSNLKGEF---P-----------NWLLENNTNLNTLVLRNNSLSGPFRMPIQ-PHWHLDTLHVSKN 123 (623)
Q Consensus 59 ~~~~~~~L~~L~ls~n~l~~~~---~-----------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n 123 (623)
.+.++++|++|+++++.....+ | ..+...+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3445566666666665421111 1 12234566777777777766544333333 4667777777766
Q ss_pred -CCCCCCChhhhhcCCCccEEecccCcccccCCccc----CCCCCCCEEEccCCc--CCcccchHHhhCCCCCCEEEccc
Q 038273 124 -FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI----GDMNSLKFLDLSHNQ--LTGEIPEHLVIGCFNLEYLVLSE 196 (623)
Q Consensus 124 -~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~ 196 (623)
.+.+.....+...+++|++|++++|.+++..+..+ ..+++|++|++++|. +.......+...+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33322122333336677777777777654333322 356677777777775 22111222334467777777777
Q ss_pred CcCccccccccccCCCCCEEeccccc-------CccccCccCcCCCCCcEE-ECcCCcCccccchhccCCCCCCEEECcc
Q 038273 197 NSLHGQLFYKKIYLRKLARLHLDANY-------CTGEIPKSLSNCSPLEGL-YMSDNNLYGNIPAWLGNLSSLNDIMMAI 268 (623)
Q Consensus 197 n~l~~~~~~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (623)
|...+..+..+..+++|+.|+++.+. +.+ .+..+.++++|+.+ .+.+... +.++..+..+++|++|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 63222355556667777777754432 222 22345666777776 3332221 23344444566777777777
Q ss_pred ccccccc-cccccCCCCCcEEeCcCc
Q 038273 269 NHLQGPI-PLEFCQLNYLEILDLSEN 293 (623)
Q Consensus 269 n~~~~~~-~~~~~~l~~L~~L~l~~n 293 (623)
|.+.... ...+..+++|+.|++++|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 7654322 222446667777777666
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8.6e-28 Score=238.27 Aligned_cols=267 Identities=19% Similarity=0.171 Sum_probs=213.0
Q ss_pred CCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccC
Q 038273 236 PLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSK 315 (623)
Q Consensus 236 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 315 (623)
.++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ...+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 34556777777766666667778899999999999998888899999999999999999986655 56788999999999
Q ss_pred ccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCC
Q 038273 316 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQI 395 (623)
Q Consensus 316 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 395 (623)
|.+.+ +...++|++|++++|.+++..+. .+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..
T Consensus 90 n~l~~------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQE------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEE------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Ccccc------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 98854 22348899999999998865543 3678999999999998777778888999999999999988765
Q ss_pred CCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCC
Q 038273 396 PGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQV 475 (623)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 475 (623)
+..+.. .+++|++|++++|.+++. + ....+++|++|++++|.+++. |..+..+++|
T Consensus 161 ~~~~~~---------------------~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 216 (317)
T 3o53_A 161 FAELAA---------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV 216 (317)
T ss_dssp GGGGGG---------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred HHHHhh---------------------ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence 544321 235899999999998855 2 234588999999999999855 4458888999
Q ss_pred cEEECCCCcccccCccccccCCCCCeeecccCccc-ccCCCCccccCCCCCccccCCCCCCCC
Q 038273 476 ESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLS-GKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 476 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+.|++++|+++ .+|..+..+++|+.|++++|+++ +..|.++..++.++.+++.+|+...+.
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999999998 46777888899999999999988 667777777888888888855544433
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=242.70 Aligned_cols=236 Identities=19% Similarity=0.192 Sum_probs=141.9
Q ss_pred CCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEc
Q 038273 234 CSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHL 313 (623)
Q Consensus 234 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 313 (623)
+++|+.|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+. ++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 3356666666666655555556666666666666666554433 55666666666666665533221 45666666
Q ss_pred cCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhc-CCCCCCEEEccCCcCc
Q 038273 314 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLC-RLKQLRLIDLSNNNLF 392 (623)
Q Consensus 314 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 392 (623)
++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus 107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 66655443222 246788888888888877777777788888888888888776666665 6788888888888776
Q ss_pred CCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCC
Q 038273 393 GQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNL 472 (623)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 472 (623)
+..+.. .+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+
T Consensus 183 ~~~~~~------------------------~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l 236 (487)
T 3oja_A 183 DVKGQV------------------------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (487)
T ss_dssp EEECCC------------------------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred cccccc------------------------cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccC
Confidence 442111 134566666666666643 3335556666666666666663 34455556
Q ss_pred CCCcEEECCCCccc-ccCccccccCCCCCeeecc
Q 038273 473 KQVESLDVSYNNLN-GKIPPQLVELNVLAVFSVA 505 (623)
Q Consensus 473 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~ 505 (623)
++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66666666666655 4444444444444444443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.5e-24 Score=230.07 Aligned_cols=267 Identities=24% Similarity=0.277 Sum_probs=144.2
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
++++|++++|+++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++. |. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence 4566666666665 4444443 56666666666665 4554 355666666666666542 22 4556666666
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.++ .+|. .+++|+.|++++|+++. +|.. +++|++|++++|.++ .+|. .+.+|+.|++++|.++
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence 666665 4444 24566666666666653 3332 356666666666665 4442 2445666666666555
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccccccccc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFC 280 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 280 (623)
.. + ..+++|+.|++++|.+++ +|. ..++|+.|++++|.++. +|. .+++|+.|++++|.+++ +| .
T Consensus 175 ~l-~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 175 SL-P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp CC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred CC-c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---C
Confidence 42 2 234555555555555553 222 12455555555555542 221 12445555555555543 22 2
Q ss_pred CCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEE
Q 038273 281 QLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYL 360 (623)
Q Consensus 281 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 360 (623)
.+++|+.|++++|.+. .++. .+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 239 ~l~~L~~L~Ls~N~L~------------------------~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 239 LPSELKELMVSGNRLT------------------------SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp CCTTCCEEECCSSCCS------------------------CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCcCcEEECCCCCCC------------------------cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 3344555555554443 2222 3456666777777666 456666667777777
Q ss_pred EcccccccccCchhhcCC
Q 038273 361 ILANNNLEGEVPNQLCRL 378 (623)
Q Consensus 361 ~L~~n~l~~~~~~~~~~l 378 (623)
++++|++.+..+..+..+
T Consensus 290 ~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 290 NLEGNPLSERTLQALREI 307 (622)
T ss_dssp ECCSCCCCHHHHHHHHHH
T ss_pred EecCCCCCCcCHHHHHhc
Confidence 777777766655555443
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.1e-28 Score=267.71 Aligned_cols=444 Identities=14% Similarity=0.046 Sum_probs=212.5
Q ss_pred ccCCCCCcEEECcCCccccccccc-cCC------------CCCCcccEEEccCCCCCCCCCcccC-CCCCCcEEEccCC-
Q 038273 10 FFNNSKLKVFSGECNEIFVESESS-HSM------------TPKFQLESVKLSGSGIHATFPKFLY-NQHDLEYVDFSDS- 74 (623)
Q Consensus 10 l~~l~~L~~L~ls~~~~~~~~~~~-~~~------------~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ls~n- 74 (623)
+.++++|++|+++++....+.... ..| ..+.+|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 455677778887776532211100 000 0112566666666655544333333 4566666666655
Q ss_pred CCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCC----CCCCCCCCEEEccCCC--CCCCCChhhhhcCCCccEEecccC
Q 038273 75 NLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMP----IQPHWHLDTLHVSKNF--FQGNIPLEIGVYFPRLVYLNLSRN 148 (623)
Q Consensus 75 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~~n~--l~~~~p~~~~~~l~~L~~L~L~~n 148 (623)
.+++.....+..++++|++|++++|.+++..+.. ...+++|++|++++|. +.......+...+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3331112223345666666666666554322221 2244556666665554 111111111122455555555555
Q ss_pred cccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEE-ecccccCcccc
Q 038273 149 DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARL-HLDANYCTGEI 227 (623)
Q Consensus 149 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L-~l~~n~~~~~~ 227 (623)
...+.++..+.++++|+.|++..+... +..+.+.+ .+..+.++++|+.+ .+..... ..+
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~------------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l 281 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAE------------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYL 281 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCC------------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGG
T ss_pred CcHHHHHHHHhcCCcceEcccccccCc------------------cchhhHHH-HHHHHhcCCCcccccCCcccch-hhH
Confidence 211124444445555555553332110 00001111 11233444455544 2222111 122
Q ss_pred CccCcCCCCCcEEECcCCcCccccc-hhccCCCCCCEEECcccccccc-ccccccCCCCCcEEeCcCccceeeCCCCCCC
Q 038273 228 PKSLSNCSPLEGLYMSDNNLYGNIP-AWLGNLSSLNDIMMAINHLQGP-IPLEFCQLNYLEILDLSENNISGTLPSCSSH 305 (623)
Q Consensus 228 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 305 (623)
+..+..+++|++|++++|.+++... ..+..+++|++|++++| +... .+.....+++|+.|+++++.-.+
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g-------- 352 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV-------- 352 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC--------
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc--------
Confidence 2333345666666666666543222 22445666677766666 3211 12222346677777764432100
Q ss_pred CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhh-ccccCcEEEcc--c----cccccc-----Cch
Q 038273 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLTRLRYLILA--N----NNLEGE-----VPN 373 (623)
Q Consensus 306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~ 373 (623)
....+.+++.........+++|+.|++..+.+++.....+. .+++|+.|+++ + +.++.. .+.
T Consensus 353 ------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 353 ------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp ------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred ------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 00000010000000012356666666666666544444443 46677777777 2 334311 122
Q ss_pred hhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccc-cccccCC
Q 038273 374 QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTSIR 452 (623)
Q Consensus 374 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~ 452 (623)
.+..+++|+.|++++ .++...+..+.. .+++|+.|++++|.+++..+..+ ..+++|+
T Consensus 427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~---------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTDKVFEYIGT---------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCHHHHHHHHH---------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCC
T ss_pred HHhhCCCccEEeecC-cccHHHHHHHHH---------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcC
Confidence 245667777777765 443222221111 13477778888877765544444 5678899
Q ss_pred eeeCCCCcccccCCc-cCCCCCCCcEEECCCCcccccCcccc-ccCCCCCeeecccCccc
Q 038273 453 ALNFSHNNLTGVIPV-SFSNLKQVESLDVSYNNLNGKIPPQL-VELNVLAVFSVAHNNLS 510 (623)
Q Consensus 453 ~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~ 510 (623)
.|++++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.-.
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 999998888644333 34557889999999998854333333 45677777666666443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.2e-26 Score=229.44 Aligned_cols=244 Identities=23% Similarity=0.199 Sum_probs=134.1
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCccc-ccCCcccC-------CCCCCCEEEccCCcCCcccchHHh
Q 038273 112 HWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN-GSIPSSIG-------DMNSLKFLDLSHNQLTGEIPEHLV 183 (623)
Q Consensus 112 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~ 183 (623)
.++|++|++++|.+ .+|..+.. .|+.|++++|.++ ..+|..+. ++++|++|++++|++++.+|..++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34556666666666 55665554 2666666666663 23344333 566666666666666655555543
Q ss_pred -hCCCCCCEEEcccCcCccccccccccC-----CCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc--cchhc
Q 038273 184 -IGCFNLEYLVLSENSLHGQLFYKKIYL-----RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN--IPAWL 255 (623)
Q Consensus 184 -~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l 255 (623)
..+++|++|++++|.+.+. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5566666666666666655 5555544 6677777777777666666677777777777777766543 22233
Q ss_pred --cCCCCCCEEECccccccc---cccccccCCCCCcEEeCcCccceeeCC--CCCCCCcccEEEccCccccccCCCCCcc
Q 038273 256 --GNLSSLNDIMMAINHLQG---PIPLEFCQLNYLEILDLSENNISGTLP--SCSSHSTIQQVHLSKNMLYGPLKYGTFF 328 (623)
Q Consensus 256 --~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 328 (623)
..+++|++|++++|.+.+ .....+..+++|+.|++++|.+.+..+ ....+++|++|++++|.++ .++.. +.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~-~~ 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG-LP 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS-CC
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh-cc
Confidence 666777777777777662 122334466677777777776664332 1112334444444444442 23322 11
Q ss_pred CCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccc
Q 038273 329 NRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNL 367 (623)
Q Consensus 329 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 367 (623)
++|++|++++|++++. |. +..+++|++|++++|++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 3444444444444432 22 33444444444444444
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.4e-26 Score=229.02 Aligned_cols=246 Identities=19% Similarity=0.144 Sum_probs=185.4
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCC-CcCChHHh------hCCCCCCEEEccCCcCcCcCCCCC--CC
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLK-GEFPNWLL------ENNTNLNTLVLRNNSLSGPFRMPI--QP 111 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~------~~l~~L~~L~L~~n~i~~~~~~~~--~~ 111 (623)
+|++|++++|.+ .+|..+... |++|++++|.++ ..+|.... .++++|++|++++|++++..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 688889999988 567655544 888999998884 35666542 168999999999999998888776 88
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhc----CCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCccc--chH-Hhh
Q 038273 112 HWHLDTLHVSKNFFQGNIPLEIGVY----FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEI--PEH-LVI 184 (623)
Q Consensus 112 l~~L~~L~l~~n~l~~~~p~~~~~~----l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-~~~ 184 (623)
+++|++|++++|.+.+. |..+... .++|++|++++|++++..+..++++++|++|++++|++.+.+ +.. .+.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999999854 7666653 279999999999999888789999999999999999877442 222 236
Q ss_pred CCCCCCEEEcccCcCccc---cccccccCCCCCEEecccccCccccC-ccCcCCCCCcEEECcCCcCccccchhccCCCC
Q 038273 185 GCFNLEYLVLSENSLHGQ---LFYKKIYLRKLARLHLDANYCTGEIP-KSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSS 260 (623)
Q Consensus 185 ~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 260 (623)
.+++|++|++++|.+.+. ....+..+++|+.|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 788999999999988732 22334566788888888888876554 44566778888888888877 5555554 67
Q ss_pred CCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273 261 LNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 261 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 77777777777755 43 667777777777777665
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5e-24 Score=227.68 Aligned_cols=268 Identities=27% Similarity=0.299 Sum_probs=173.9
Q ss_pred CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEe
Q 038273 65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144 (623)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ 144 (623)
++++|++++|.++ .+|..++ ++|++|++++|.+++. |. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 5777888877777 6776542 6777777777777653 22 4567777777777776 5665 356777777
Q ss_pred cccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc
Q 038273 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT 224 (623)
Q Consensus 145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 224 (623)
+++|.+++ +|. .+++|+.|++++|+++ .+|. .+++|++|++++|.+.+. +. ..++|+.|++++|.++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC
Confidence 77777764 333 4566777777777776 5554 246666666666666532 11 2345555555555555
Q ss_pred cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCC
Q 038273 225 GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSS 304 (623)
Q Consensus 225 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 304 (623)
+ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+. .++. .
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~~-l~~---------------------------~~~~L~~L~L~~N~l~-~l~~--~ 219 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLAS-LPT---------------------------LPSELYKLWAYNNRLT-SLPA--L 219 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSC-CCC---------------------------CCTTCCEEECCSSCCS-SCCC--C
T ss_pred C-Cc---ccCCCCcEEECCCCCCCC-CCC---------------------------ccchhhEEECcCCccc-ccCC--C
Confidence 3 22 234555555555555543 121 1234455555555444 2222 1
Q ss_pred CCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEE
Q 038273 305 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLI 384 (623)
Q Consensus 305 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 384 (623)
+++|+.|++++|.+++ ++ ..+++|+.|++++|.++. +|. .+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 2456666666665543 33 345889999999999995 454 6789999999999999 678889999999999
Q ss_pred EccCCcCcCCCCCcccccc
Q 038273 385 DLSNNNLFGQIPGCLDNTS 403 (623)
Q Consensus 385 ~l~~n~l~~~~~~~~~~~~ 403 (623)
++++|++++..|..+....
T Consensus 290 ~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 290 NLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ECCSCCCCHHHHHHHHHHH
T ss_pred EecCCCCCCcCHHHHHhcc
Confidence 9999999988887766543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.7e-24 Score=209.41 Aligned_cols=204 Identities=23% Similarity=0.254 Sum_probs=155.9
Q ss_pred ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEcc
Q 038273 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS 387 (623)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 387 (623)
.+.++++++.++ .+|.. + .+++++|++++|++++..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 344555555443 23332 1 2467777777777776666667777777777777777775555666777888888888
Q ss_pred CCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCc
Q 038273 388 NNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV 467 (623)
Q Consensus 388 ~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 467 (623)
+|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 94 ~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 94 DNKLQALPIGVFDQ----------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp SSCCCCCCTTTTTT----------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCcCCcCCHhHccc----------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 88776555544433 34788888888888877777788899999999999999877777
Q ss_pred cCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 468 SFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
.|..+++|++|++++|++....+..+..+++|++|++++|++++..+..+..+++|+.+++++|||.|+|
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 7899999999999999999877777888999999999999999877777888899999999999999944
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.5e-24 Score=210.68 Aligned_cols=207 Identities=21% Similarity=0.226 Sum_probs=160.4
Q ss_pred cccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEc
Q 038273 307 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDL 386 (623)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 386 (623)
++++|++++|.+.+. +...|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 344444444444332 2223677788888888888887666667888888888888888888777777888888888888
Q ss_pred cCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCccccc-CCccccccccCCeeeCCCCcccccC
Q 038273 387 SNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGE-IPPQIGKLTSIRALNFSHNNLTGVI 465 (623)
Q Consensus 387 ~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~ 465 (623)
++|.+.+..+..+.. +++|++|++++|.+++. +|..+..+++|++|++++|.+++..
T Consensus 108 ~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 108 VETNLASLENFPIGH----------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTSCCCCSTTCCCTT----------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCccccCchhccc----------------------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 888887655544333 45888888888888764 5888999999999999999999887
Q ss_pred CccCCCCCCCc----EEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 466 PVSFSNLKQVE----SLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 466 ~~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+..+..+++|+ +|++++|++.+..+..+. ..+|+.|++++|++++..+..+..+++|+.+++++||+.|+|
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 77887777777 899999999976665554 458999999999999887777788999999999999999944
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.7e-25 Score=231.96 Aligned_cols=234 Identities=23% Similarity=0.196 Sum_probs=163.8
Q ss_pred CCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCc
Q 038273 212 KLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLS 291 (623)
Q Consensus 212 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 291 (623)
+|+.|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+..+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 44445555554444444445555555555555555544333 4555555555555555543221 2556666666
Q ss_pred CccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhh-ccccCcEEEccccccccc
Q 038273 292 ENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLTRLRYLILANNNLEGE 370 (623)
Q Consensus 292 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 370 (623)
+|.+.+..+. .+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+.+.
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6655544332 2456666777777665554444 77889999999999999988887776 789999999999999865
Q ss_pred CchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCcccccccc
Q 038273 371 VPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTS 450 (623)
Q Consensus 371 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 450 (623)
+ ....+++|+.|++++|.+++..|. +.. +++|+.|++++|.+++ +|..+..+++
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~----------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 185 -K-GQVVFAKLKTLDLSSNKLAFMGPE-FQS----------------------AAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCEECGG-GGG----------------------GTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred -c-ccccCCCCCEEECCCCCCCCCCHh-HcC----------------------CCCccEEEecCCcCcc-cchhhccCCC
Confidence 2 344699999999999999875554 433 4599999999999994 6778999999
Q ss_pred CCeeeCCCCccc-ccCCccCCCCCCCcEEECC
Q 038273 451 IRALNFSHNNLT-GVIPVSFSNLKQVESLDVS 481 (623)
Q Consensus 451 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 481 (623)
|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999999998 6677788888888888775
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.2e-24 Score=210.16 Aligned_cols=202 Identities=25% Similarity=0.213 Sum_probs=162.7
Q ss_pred CcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEE
Q 038273 306 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLID 385 (623)
Q Consensus 306 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 385 (623)
+++++++++++.++ .+|.. + .++++.|++++|.+++..+..+..+++|+.|++++|.+++..+ ...+++|+.|+
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred CCccEEECCCCCCC-cCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 34444444444442 33333 2 2578888888888887777888889999999999999885433 27889999999
Q ss_pred ccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccC
Q 038273 386 LSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVI 465 (623)
Q Consensus 386 l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 465 (623)
+++|++. .+|..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus 84 Ls~N~l~-~l~~~~~----------------------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp CCSSCCS-SCCCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCCcCC-cCchhhc----------------------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 9999886 3343332 2458999999999999777788999999999999999999888
Q ss_pred CccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 466 PVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+..|..+++|+.|+|++|+++...+..+..+++|++|++++|+++ .+|..+...++|+.+++++|||.|+|
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 888999999999999999999777777889999999999999999 55666667889999999999999943
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.2e-23 Score=202.48 Aligned_cols=222 Identities=21% Similarity=0.213 Sum_probs=159.7
Q ss_pred EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEccc
Q 038273 117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE 196 (623)
Q Consensus 117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 196 (623)
..+..+..+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+.++++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 3455555555 6676553 47888888888888777777888888888888888887 67766667788888888888
Q ss_pred CcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc-cchhccCCCCCCEEECccccccccc
Q 038273 197 NSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN-IPAWLGNLSSLNDIMMAINHLQGPI 275 (623)
Q Consensus 197 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~ 275 (623)
|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|++|++++|++.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 888877777888888888888888888877666788889999999999988764 5788888899999999999888777
Q ss_pred cccccCCCCCc----EEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCC
Q 038273 276 PLEFCQLNYLE----ILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 344 (623)
Q Consensus 276 ~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 344 (623)
+..+..+++|+ .|++++|.+.+..+......+|++|++++|.+.+ ++...|..+++|+.|++++|++.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCccc
Confidence 66666666665 7888888877555544444445555555544432 22222444444444444444444
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.8e-23 Score=198.04 Aligned_cols=199 Identities=24% Similarity=0.268 Sum_probs=86.5
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
+.+++++++++++. +|..+. +++++|++++|.++ .++...|.++++|++|++++|+++...+..+.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 34555555555542 333222 34555555555554 333333344555555555555554444444444555555555
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+.
T Consensus 93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCc
Confidence 555444 333333333444444444444444444444444444444444444444 344333334444444444444443
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCC
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDN 245 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 245 (623)
+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 333333333333333333333333322223333333333333333
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.8e-23 Score=199.25 Aligned_cols=224 Identities=19% Similarity=0.180 Sum_probs=115.2
Q ss_pred ccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273 42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS 121 (623)
Q Consensus 42 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 121 (623)
+..+++.++.+... .....+++|+.|++++|.++ .++. +..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 33444444444322 22334555666666665555 3332 24555666666666655542 245555555555555
Q ss_pred CCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273 122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201 (623)
Q Consensus 122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 201 (623)
+|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+++
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCc
Confidence 55555 333333333455555555555555444444555555666666655555 4444444455555555555555554
Q ss_pred ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273 202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ 281 (623)
Q Consensus 202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 281 (623)
..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.+++..|.+.+.+|..++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 444444555555555555555554444445555555555555554432 2334455555555555555544433
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.2e-22 Score=196.40 Aligned_cols=209 Identities=21% Similarity=0.264 Sum_probs=161.6
Q ss_pred cCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeE
Q 038273 256 GNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 335 (623)
Q Consensus 256 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 335 (623)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+. + + ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-----------------------~-~--~~l~~l~~L~~ 89 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----------------------D-I--SALKELTNLTY 89 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-----------------------C-C--GGGTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-----------------------C-c--hhhcCCCCCCE
Confidence 3456666666666665522 23455566666666665554 2 1 13667788888
Q ss_pred EeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCC
Q 038273 336 LDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSA 415 (623)
Q Consensus 336 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~ 415 (623)
|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------- 155 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-------------- 155 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------
Confidence 888888888777777888888888888888888777777888888999999998887666655443
Q ss_pred CccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcccccc
Q 038273 416 PTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVE 495 (623)
Q Consensus 416 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 495 (623)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+ .
T Consensus 156 --------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~ 220 (272)
T 3rfs_A 156 --------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------T 220 (272)
T ss_dssp --------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------C
T ss_pred --------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------c
Confidence 3488899999999987777778899999999999999998888889999999999999998874 3
Q ss_pred CCCCCeeecccCcccccCCCCccccC
Q 038273 496 LNVLAVFSVAHNNLSGKIPEWTAQFT 521 (623)
Q Consensus 496 l~~L~~L~l~~N~l~~~~~~~~~~~~ 521 (623)
++.|+.++++.|.++|.+|.++..++
T Consensus 221 ~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CcHHHHHHHHHHhCCCcccCcccccC
Confidence 56789999999999999998765443
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=8.3e-23 Score=195.13 Aligned_cols=178 Identities=20% Similarity=0.238 Sum_probs=98.7
Q ss_pred eeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCC
Q 038273 333 IVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDG 412 (623)
Q Consensus 333 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~ 412 (623)
.++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------- 81 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD----------- 81 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-----------
Confidence 344555555444 2232222 34555555555555444445555555555555555555444433332
Q ss_pred CCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccc
Q 038273 413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ 492 (623)
Q Consensus 413 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 492 (623)
+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..
T Consensus 82 -----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 82 -----------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp -----------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -----------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 225555555555555444455556666666666666666555555666666666666666666555555
Q ss_pred cccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCC
Q 038273 493 LVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 535 (623)
Q Consensus 493 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C 535 (623)
+..+++|++|++++|++++..+..+..+++|+.+++++||+.|
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666666666666666665555555566666666666666666
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.9e-22 Score=193.00 Aligned_cols=180 Identities=23% Similarity=0.181 Sum_probs=127.2
Q ss_pred CCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCC
Q 038273 109 IQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFN 188 (623)
Q Consensus 109 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 188 (623)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.++ .++.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence 445666777777777766 6665553 47777777777777666677777777777777777776 55543 46777
Q ss_pred CCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcc
Q 038273 189 LEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAI 268 (623)
Q Consensus 189 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (623)
|++|++++|.+. ..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 777777777776 3455666677777777777777766666677777777777777777766666677777777777777
Q ss_pred ccccccccccccCCCCCcEEeCcCccce
Q 038273 269 NHLQGPIPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 269 n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
|++.+..+..|..+++|+.|++++|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 7777665566667777777777777665
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.7e-22 Score=188.49 Aligned_cols=178 Identities=14% Similarity=0.057 Sum_probs=101.7
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCC-CCCcCChHHhhCCCCCCEEEccC-CcCcCcCCCCCCCCCCCCEE
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSN-LKGEFPNWLLENNTNLNTLVLRN-NSLSGPFRMPIQPHWHLDTL 118 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L 118 (623)
+|++|++++|++++..+..+.++++|++|++++|. ++ .++...|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666665555566666666666666665 55 45554456666666666665 66665555566666666666
Q ss_pred EccCCCCCCCCChhhhhcCCCcc---EEecccC-cccccCCcccCCCCCCC-EEEccCCcCCcccchHHhhCCCCCCEEE
Q 038273 119 HVSKNFFQGNIPLEIGVYFPRLV---YLNLSRN-DFNGSIPSSIGDMNSLK-FLDLSHNQLTGEIPEHLVIGCFNLEYLV 193 (623)
Q Consensus 119 ~l~~n~l~~~~p~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 193 (623)
++++|.++ .+|. +..+++|+ +|++++| .++...+..|.++++|+ +|++++|+++ .+|...|.. ++|++|+
T Consensus 111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence 66666665 3554 22244555 6666666 55554445556666666 6666666665 555555433 4555555
Q ss_pred cccCc-CccccccccccC-CCCCEEecccccCc
Q 038273 194 LSENS-LHGQLFYKKIYL-RKLARLHLDANYCT 224 (623)
Q Consensus 194 l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~~ 224 (623)
+++|. +....+..+..+ ++|+.|++++|.++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 55553 544444444444 45555555555444
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=4.4e-23 Score=208.46 Aligned_cols=252 Identities=20% Similarity=0.193 Sum_probs=149.3
Q ss_pred EEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCCh----HHhhCCC-CCCEEEccCCcCcCcCCCCCCCC-----C
Q 038273 44 SVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPN----WLLENNT-NLNTLVLRNNSLSGPFRMPIQPH-----W 113 (623)
Q Consensus 44 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~ 113 (623)
+++++.|.+++.+|..+...++|++||+++|.++ ..+. ..+..++ +|++|++++|++++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4567777777777776666666888888877776 3443 3346666 77777777777766555444443 6
Q ss_pred CCCEEEccCCCCCCCCChhhhhc---C-CCccEEecccCcccccCCccc----CC-CCCCCEEEccCCcCCcccchHH--
Q 038273 114 HLDTLHVSKNFFQGNIPLEIGVY---F-PRLVYLNLSRNDFNGSIPSSI----GD-MNSLKFLDLSHNQLTGEIPEHL-- 182 (623)
Q Consensus 114 ~L~~L~l~~n~l~~~~p~~~~~~---l-~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~-- 182 (623)
+|++|++++|.+.+..+..+... + ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.....+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 77777777777775555443332 2 577777777777765544333 33 2577777777777763222221
Q ss_pred -hhCCC-CCCEEEcccCcCccccccccc----cC-CCCCEEecccccCccc----cCccCcC-CCCCcEEECcCCcCccc
Q 038273 183 -VIGCF-NLEYLVLSENSLHGQLFYKKI----YL-RKLARLHLDANYCTGE----IPKSLSN-CSPLEGLYMSDNNLYGN 250 (623)
Q Consensus 183 -~~~l~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~L~~n~l~~~ 250 (623)
+...+ +|++|++++|.+++..+..+. .+ ++|+.|++++|.++.. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 12333 777777777777655543332 33 4677777777766542 2233333 34677777777766654
Q ss_pred cc----hhccCCCCCCEEECccccccccc-------cccccCCCCCcEEeCcCccce
Q 038273 251 IP----AWLGNLSSLNDIMMAINHLQGPI-------PLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 251 ~~----~~l~~l~~L~~L~l~~n~~~~~~-------~~~~~~l~~L~~L~l~~n~~~ 296 (623)
.+ ..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 33 22345566667777666643222 223445555666666666554
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.4e-22 Score=186.43 Aligned_cols=195 Identities=15% Similarity=0.179 Sum_probs=88.3
Q ss_pred CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCc-CcCcCCCCCCCCCCCCEEEccC-CCCCCCCChhhhhcCCCccE
Q 038273 65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNS-LSGPFRMPIQPHWHLDTLHVSK-NFFQGNIPLEIGVYFPRLVY 142 (623)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~l~~L~~ 142 (623)
+|++|++++|.++ .+|...|.++++|++|++++|+ +++..+..|.++++|++|++++ |.++ .+|...+..+++|++
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 4555555555555 3444334455555555555554 4444444444555555555554 4444 333333333444444
Q ss_pred EecccCcccccCCcccCCCCCCC---EEEccCC-cCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCC-EEe
Q 038273 143 LNLSRNDFNGSIPSSIGDMNSLK---FLDLSHN-QLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLA-RLH 217 (623)
Q Consensus 143 L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~ 217 (623)
|++++|.+++ +|. +..+++|+ +|++++| .++ .++.. .+..+++|+ .|+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~------------------------~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVN------------------------AFQGLCNETLTLK 162 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTT------------------------TTTTTBSSEEEEE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcc------------------------cccchhcceeEEE
Confidence 4444444442 332 44444444 4444444 443 34433 344444444 444
Q ss_pred cccccCccccCccCcCCCCCcEEECcCCc-CccccchhccCC-CCCCEEECccccccccccccccCCCCCcEEeCcC
Q 038273 218 LDANYCTGEIPKSLSNCSPLEGLYMSDNN-LYGNIPAWLGNL-SSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSE 292 (623)
Q Consensus 218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 292 (623)
+++|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|.+++..+. .+++|+.|++++
T Consensus 163 l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 163 LYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp CCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred cCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 4444444222223333 445555555552 444444444444 4555555555554432221 344455555444
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=192.18 Aligned_cols=227 Identities=18% Similarity=0.153 Sum_probs=167.4
Q ss_pred CCCcEEEccCCCCCCcCChHH--hhCCCCCCEEEccCCcCcCcCCCCC--CCCCCCCEEEccCCCCCCCCC----hhhhh
Q 038273 64 HDLEYVDFSDSNLKGEFPNWL--LENNTNLNTLVLRNNSLSGPFRMPI--QPHWHLDTLHVSKNFFQGNIP----LEIGV 135 (623)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~ 135 (623)
..++.+.+.++.++...-..+ +..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 457888888877652111111 1235679999999999998888887 889999999999999986554 2223
Q ss_pred cCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcc--cch-HHhhCCCCCCEEEcccCcCcccccc---cccc
Q 038273 136 YFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGE--IPE-HLVIGCFNLEYLVLSENSLHGQLFY---KKIY 209 (623)
Q Consensus 136 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~ 209 (623)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++. ..+..+++|++|++++|.++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 478999999999999888888899999999999999987632 222 2235688899999999988642221 2457
Q ss_pred CCCCCEEecccccCccccCccCcCC---CCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCc
Q 038273 210 LRKLARLHLDANYCTGEIPKSLSNC---SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLE 286 (623)
Q Consensus 210 ~~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 286 (623)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7888888888888887767666665 68888888888887 4455553 6788888888888754 22 56677778
Q ss_pred EEeCcCccce
Q 038273 287 ILDLSENNIS 296 (623)
Q Consensus 287 ~L~l~~n~~~ 296 (623)
.|++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 8888777765
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.3e-22 Score=204.94 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=33.8
Q ss_pred ccCCeeeCCCCcccccCC----ccCCCCCCCcEEECCCCcccccC-------ccccccCCCCCeeecccCccccc
Q 038273 449 TSIRALNFSHNNLTGVIP----VSFSNLKQVESLDVSYNNLNGKI-------PPQLVELNVLAVFSVAHNNLSGK 512 (623)
Q Consensus 449 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~-------p~~~~~l~~L~~L~l~~N~l~~~ 512 (623)
++|++|++++|.+++..+ ..+..+++|+.|++++|.+.... +..+..+++|+.|++++|++...
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 356666666666654332 23455566666666666633222 22344555566666666665543
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.4e-23 Score=209.96 Aligned_cols=240 Identities=18% Similarity=0.208 Sum_probs=144.3
Q ss_pred CCcccCCCCCCcEEEccCCCCCCcCChHH---hhCCCCCCEEEccCCcC---cCcCCCCC-------CCCCCCCEEEccC
Q 038273 56 FPKFLYNQHDLEYVDFSDSNLKGEFPNWL---LENNTNLNTLVLRNNSL---SGPFRMPI-------QPHWHLDTLHVSK 122 (623)
Q Consensus 56 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~~l~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~l~~ 122 (623)
++..+..+++|++|++++|.+++..+..+ +..+++|++|++++|.+ ++..|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44555566666677776666653322221 24566666666666533 22223222 4566777777777
Q ss_pred CCCCC----CCChhhhhcCCCccEEecccCcccccCCcccC----CC---------CCCCEEEccCCcCC-cccch--HH
Q 038273 123 NFFQG----NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG----DM---------NSLKFLDLSHNQLT-GEIPE--HL 182 (623)
Q Consensus 123 n~l~~----~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~~~--~~ 182 (623)
|.+.+ .+|..+.. +++|++|++++|.++...+..+. .+ ++|++|++++|+++ +.++. ..
T Consensus 104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 76664 23444443 56777777777776543333332 22 67777777777775 23332 23
Q ss_pred hhCCCCCCEEEcccCcCcc-----ccccccccCCCCCEEecccccCc----cccCccCcCCCCCcEEECcCCcCccc---
Q 038273 183 VIGCFNLEYLVLSENSLHG-----QLFYKKIYLRKLARLHLDANYCT----GEIPKSLSNCSPLEGLYMSDNNLYGN--- 250 (623)
Q Consensus 183 ~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~--- 250 (623)
+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|..+..+++|+.|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 3467777777777777663 22335666777777777777774 44556667777777777777777654
Q ss_pred -cchhccC--CCCCCEEECccccccc----cccccc-cCCCCCcEEeCcCccce
Q 038273 251 -IPAWLGN--LSSLNDIMMAINHLQG----PIPLEF-CQLNYLEILDLSENNIS 296 (623)
Q Consensus 251 -~~~~l~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~~~ 296 (623)
++..+.. +++|+.|++++|.+.. .++..+ .++++|+.|++++|.+.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 3444533 6777777777777765 244444 45677777777777665
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=192.61 Aligned_cols=226 Identities=20% Similarity=0.214 Sum_probs=166.2
Q ss_pred cccEEEccCCCCCCC-CCc--ccCCCCCCcEEEccCCCCCCcCChHHh-hCCCCCCEEEccCCcCcCcCC----CCCCCC
Q 038273 41 QLESVKLSGSGIHAT-FPK--FLYNQHDLEYVDFSDSNLKGEFPNWLL-ENNTNLNTLVLRNNSLSGPFR----MPIQPH 112 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~-~~~--~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~----~~~~~l 112 (623)
.++.+.+.++.++.. +.. ....+++|++|++++|.+++..|..++ ..+++|++|++++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 577778877766432 111 112345688888888888766666544 677888888888888876443 234567
Q ss_pred CCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCccccc--C--CcccCCCCCCCEEEccCCcCCcccchH---HhhC
Q 038273 113 WHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS--I--PSSIGDMNSLKFLDLSHNQLTGEIPEH---LVIG 185 (623)
Q Consensus 113 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~ 185 (623)
++|++|++++|.+. .++...+..+++|++|++++|++.+. . +..+..+++|++|++++|+++ .++.. ++..
T Consensus 145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 88888888888887 44444444477888888888886532 1 233467889999999999987 55543 5567
Q ss_pred CCCCCEEEcccCcCccccccccccC---CCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCC
Q 038273 186 CFNLEYLVLSENSLHGQLFYKKIYL---RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLN 262 (623)
Q Consensus 186 l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 262 (623)
+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999988777766665 69999999999998 5566654 7999999999999864 33 67889999
Q ss_pred EEECccccccc
Q 038273 263 DIMMAINHLQG 273 (623)
Q Consensus 263 ~L~l~~n~~~~ 273 (623)
.|++++|.++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998863
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.8e-23 Score=205.31 Aligned_cols=248 Identities=14% Similarity=0.171 Sum_probs=134.2
Q ss_pred CcEEEccCCCCCCcCChHHhhCC--CCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCC-CChhhhhcCCCccE
Q 038273 66 LEYVDFSDSNLKGEFPNWLLENN--TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGN-IPLEIGVYFPRLVY 142 (623)
Q Consensus 66 L~~L~ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~ 142 (623)
++.++++++.+. + ..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. +|..+ ..+++|++
T Consensus 49 ~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCSE
T ss_pred heeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCCE
Confidence 556666655543 1 222344 5666666666666554333 34566666666666665533 33333 23556666
Q ss_pred EecccCcccccCCcccCCCCCCCEEEccCC-cCCcccchHHhhCCCCCCEEEcccC-cCccc-cccccccCC-CCCEEec
Q 038273 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHN-QLTGEIPEHLVIGCFNLEYLVLSEN-SLHGQ-LFYKKIYLR-KLARLHL 218 (623)
Q Consensus 143 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l 218 (623)
|++++|.+++..+..++++++|++|++++| .+++......+.++++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 666666666555556666666666666666 4442212223345666666666666 55543 344455566 6666666
Q ss_pred ccc--cCc-cccCccCcCCCCCcEEECcCCc-CccccchhccCCCCCCEEECcccc-ccccccccccCCCCCcEEeCcCc
Q 038273 219 DAN--YCT-GEIPKSLSNCSPLEGLYMSDNN-LYGNIPAWLGNLSSLNDIMMAINH-LQGPIPLEFCQLNYLEILDLSEN 293 (623)
Q Consensus 219 ~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n 293 (623)
++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 666 333 2334445556666666666666 555555566666666666666663 22111224555666666666666
Q ss_pred cceeeCCCCC--CC-CcccEEEccCccccccCCC
Q 038273 294 NISGTLPSCS--SH-STIQQVHLSKNMLYGPLKY 324 (623)
Q Consensus 294 ~~~~~~~~~~--~~-~~L~~L~l~~n~l~~~~~~ 324 (623)
+ +... .. ..++.|++++|.+++..+.
T Consensus 283 -i----~~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 -V----PDGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp -S----CTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred -c----CHHHHHHHHhhCcceEEecccCccccCC
Confidence 2 1111 11 2355555666666555443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.4e-22 Score=203.13 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=99.3
Q ss_pred CcEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCc-CChHHhhCCCCCCEE
Q 038273 16 LKVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE-FPNWLLENNTNLNTL 94 (623)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~L 94 (623)
++.+|++++.+....... ....++++|++++|.+.+..+. +..+++|++|++++|.+++. ++. .+..+++|++|
T Consensus 49 ~~~l~l~~~~~~~~~~~~---~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGR---LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCCHHHHHH---HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEE
T ss_pred heeeccccccCCHHHHHh---hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEE
Confidence 566666665543211100 1002566666666666554443 44566666666666665533 332 23566666666
Q ss_pred EccCCcCcCcCCCCCCCCCCCCEEEccCC-CCCCC-CChhhhhcCCCccEEecccC-ccccc-CCcccCCCC-CCCEEEc
Q 038273 95 VLRNNSLSGPFRMPIQPHWHLDTLHVSKN-FFQGN-IPLEIGVYFPRLVYLNLSRN-DFNGS-IPSSIGDMN-SLKFLDL 169 (623)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~-~L~~L~l 169 (623)
++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 66666655444445555666666666665 34421 222222 2455666666655 55432 334445555 5555555
Q ss_pred cCC--cCC-cccchHHhhCCCCCCEEEcccCc-CccccccccccCCCCCEEecccc
Q 038273 170 SHN--QLT-GEIPEHLVIGCFNLEYLVLSENS-LHGQLFYKKIYLRKLARLHLDAN 221 (623)
Q Consensus 170 ~~n--~l~-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n 221 (623)
++| .++ +.++. .+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 203 SGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 555 232 12222 22345555555555555 44344444444445555555444
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.6e-20 Score=179.16 Aligned_cols=177 Identities=19% Similarity=0.205 Sum_probs=104.2
Q ss_pred CCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEc
Q 038273 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVL 194 (623)
Q Consensus 115 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 194 (623)
.++++++++.++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEEC
Confidence 344555555555 4554433 35556666666655555555556666666666666655 444444455566666666
Q ss_pred ccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccc
Q 038273 195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP 274 (623)
Q Consensus 195 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 274 (623)
++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 66665555555555566666666666666655555556666666666666666655555566666666666666666655
Q ss_pred ccccccCCCCCcEEeCcCccce
Q 038273 275 IPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 275 ~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
.+..+..+++|+.|++++|.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 5556666666666666666654
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.4e-22 Score=206.81 Aligned_cols=235 Identities=20% Similarity=0.248 Sum_probs=161.3
Q ss_pred cccEEEccCCCCCCC----CCcccCCCCCCcEEEccCCCC---CCcCChHH------hhCCCCCCEEEccCCcCcC----
Q 038273 41 QLESVKLSGSGIHAT----FPKFLYNQHDLEYVDFSDSNL---KGEFPNWL------LENNTNLNTLVLRNNSLSG---- 103 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~l---~~~~~~~~------~~~l~~L~~L~L~~n~i~~---- 103 (623)
+|++|++++|.+... ++..+..+++|++|++++|.+ ++.+|..+ +..+++|++|++++|.+.+
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 677777777777654 233466777788888877533 33445443 3567788888888887765
Q ss_pred cCCCCCCCCCCCCEEEccCCCCCCCCChhhhhc---C---------CCccEEecccCccc-ccCC---cccCCCCCCCEE
Q 038273 104 PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVY---F---------PRLVYLNLSRNDFN-GSIP---SSIGDMNSLKFL 167 (623)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~---l---------~~L~~L~L~~n~i~-~~~~---~~~~~l~~L~~L 167 (623)
.++..+..+++|++|++++|.+.+..+..+... + ++|++|++++|.++ ...+ ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 244456677788888888887753333333322 2 68888888888876 2333 356677888888
Q ss_pred EccCCcCCcc----cchHHhhCCCCCCEEEcccCcCc----cccccccccCCCCCEEecccccCccc----cCccC--cC
Q 038273 168 DLSHNQLTGE----IPEHLVIGCFNLEYLVLSENSLH----GQLFYKKIYLRKLARLHLDANYCTGE----IPKSL--SN 233 (623)
Q Consensus 168 ~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~--~~ 233 (623)
++++|+++.. +....+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+++. ++..+ ..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 8888877621 22213356788888888888875 45566777788888888888887754 34555 33
Q ss_pred CCCCcEEECcCCcCcc----ccchhc-cCCCCCCEEECccccccccc
Q 038273 234 CSPLEGLYMSDNNLYG----NIPAWL-GNLSSLNDIMMAINHLQGPI 275 (623)
Q Consensus 234 l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~ 275 (623)
+++|+.|++++|.+++ .+|..+ .++++|++|++++|.+.+..
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8889999999998887 366666 66889999999999888655
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.9e-20 Score=182.94 Aligned_cols=193 Identities=21% Similarity=0.310 Sum_probs=103.7
Q ss_pred CCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc
Q 038273 61 YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL 140 (623)
Q Consensus 61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 140 (623)
.++++|++|++++|.++ .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ .+.. +++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTC
T ss_pred HHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCC
Confidence 35666777777777666 4542 3566677777777776665433 666666666666666665 333 2222 4566
Q ss_pred cEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEeccc
Q 038273 141 VYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220 (623)
Q Consensus 141 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 220 (623)
++|++++|.+++. + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~---------------- 168 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP---------------- 168 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG----------------
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh----------------
Confidence 6666666665532 2 2555566666666666555 3333 3445555555555555443222
Q ss_pred ccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273 221 NYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 221 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.++
T Consensus 169 ----------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 ----------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ----------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ----------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 4444555555555555443322 444555555555555554332 2445555555555555554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.5e-20 Score=183.42 Aligned_cols=190 Identities=18% Similarity=0.278 Sum_probs=155.9
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
+|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|++++. ..+..+++|++|++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 89999999999875 45 5889999999999999998 5665 68999999999999999874 36889999999999
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.+. .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++|++++|.+.
T Consensus 115 ~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 115 TSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp TTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccC
Confidence 999998 5654 3 447899999999999985433 889999999999999998 6666 578999999999999987
Q ss_pred cccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCcc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYG 249 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 249 (623)
+..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 6543 666777777777777776543 25666777777777776653
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.9e-20 Score=186.73 Aligned_cols=243 Identities=18% Similarity=0.111 Sum_probs=165.2
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCE-EEc
Q 038273 116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEY-LVL 194 (623)
Q Consensus 116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l 194 (623)
++++.++++++ ++|..+. +++++|+|++|+|+...+.+|.++++|++|++++|++.+.+|..+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56778888888 7887664 478888898888886666778888888888888888865777777777777665 445
Q ss_pred ccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccc
Q 038273 195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP 274 (623)
Q Consensus 195 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 274 (623)
++|.+....+..|..+++|+.|++++|+++...+..+....++..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 556666666666666666666666666666544444444445555555432 223322
Q ss_pred ccccccCCC-CCcEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhc
Q 038273 275 IPLEFCQLN-YLEILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER 353 (623)
Q Consensus 275 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 353 (623)
.+..|..+. .++.|++++|+++...+..+...+++++++.++...+.++.++|..+++|++||+++|+++...+..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 333333332 4666777777776555555566677777777554446777777899999999999999998554433
Q ss_pred cccCcEEEcccccccccCchhhcCCCCCCEEEccCC
Q 038273 354 LTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNN 389 (623)
Q Consensus 354 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 389 (623)
+.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4566677666655443556 4788999999999754
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3.8e-20 Score=185.81 Aligned_cols=204 Identities=17% Similarity=0.129 Sum_probs=123.9
Q ss_pred cEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccE-Eec
Q 038273 67 EYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY-LNL 145 (623)
Q Consensus 67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~-L~L 145 (623)
++++.+++.++ ++|..+ .+++++|+|++|+|+...+.+|.++++|++|++++|.+.+.+|...+..+++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 666543 3467777777777766666667777777777777777655566665555555554 455
Q ss_pred ccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEccc-CcCccccccccccCC-CCCEEecccccC
Q 038273 146 SRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSE-NSLHGQLFYKKIYLR-KLARLHLDANYC 223 (623)
Q Consensus 146 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~n~~ 223 (623)
..|+++...|..|..+++|++|++++|++. .++...+....++..+++.+ +.+....+..|..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 567777666677777777777777777776 55555444555666666654 344444444444443 456666666666
Q ss_pred ccccCccCcCCCCCcEEECcC-CcCccccchhccCCCCCCEEECcccccccccc
Q 038273 224 TGEIPKSLSNCSPLEGLYMSD-NNLYGNIPAWLGNLSSLNDIMMAINHLQGPIP 276 (623)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (623)
+.+.+..| ...+|+.+++.+ |.++...+..|..+++|++|++++|+++...+
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 64433333 335566666653 44444444455666666666666666664433
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1e-20 Score=176.32 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=95.8
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 505 (623)
+|+.|++++|.+++..|..|..+++|++|+|++|.++.+.+..|.++++|+.|+|++|++.+..|..|..+++|++|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 55555555555665667778888888888888888887777778888899999999999988888888888999999999
Q ss_pred cCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 038273 506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPE 549 (623)
Q Consensus 506 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~ 549 (623)
+|++++..+..+..+++|+.+++++||+.| +|+..|...
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c-----~c~l~~l~~ 175 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFIC-----DCHLKWLAD 175 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEEC-----SGGGHHHHH
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCC-----CCccHHHHH
Confidence 999988888778888899999999999999 555544433
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=2.2e-20 Score=188.27 Aligned_cols=179 Identities=21% Similarity=0.177 Sum_probs=126.6
Q ss_pred eEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhc-CCCCCCEEEccCCcCcCCCCCccccccccCCCCCCC
Q 038273 334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLC-RLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDG 412 (623)
Q Consensus 334 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~ 412 (623)
+.++++++.++. +|..+. +.++.|+|++|.+++..+..+. .+++|+.|++++|++.+..+..+..
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 86 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------- 86 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence 456666666663 443332 3467777777777766666665 6777777777777776655554443
Q ss_pred CCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccc
Q 038273 413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQ 492 (623)
Q Consensus 413 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 492 (623)
+++|++|+|++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|+++...+..
T Consensus 87 -----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 87 -----------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp -----------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred -----------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 347777777777777666667788888888888888888777888888888888888888888655555
Q ss_pred c---ccCCCCCeeecccCcccccCCCCccccCC--CCCccccCCCCCCCC
Q 038273 493 L---VELNVLAVFSVAHNNLSGKIPEWTAQFTT--FKEDSYEGNPLLCGK 537 (623)
Q Consensus 493 ~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~l~l~~Np~~C~~ 537 (623)
+ ..+++|+.|++++|+++...+..+..++. ++.+++++|||.|+|
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 5 56788888888888888665555656665 377888888888865
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.4e-19 Score=165.80 Aligned_cols=181 Identities=23% Similarity=0.286 Sum_probs=113.7
Q ss_pred cEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccC
Q 038273 43 ESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSK 122 (623)
Q Consensus 43 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 122 (623)
+.++++++++.. +|..+ .++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 455666665542 33322 346677777777666 45555456667777777777766665555566667777777777
Q ss_pred CCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccc
Q 038273 123 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQ 202 (623)
Q Consensus 123 n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 202 (623)
|.++ .+|...+..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+.+
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec-
Confidence 7666 455544444667777777777776555555667777777777777776 5666555667777777777765542
Q ss_pred cccccccCCCCCEEecccccCccccCccCcCCCC
Q 038273 203 LFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSP 236 (623)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 236 (623)
.+++|+.|+++.|++++.+|..++.++.
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456666666666666666666555443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3e-19 Score=165.17 Aligned_cols=181 Identities=17% Similarity=0.144 Sum_probs=154.5
Q ss_pred cEEECcCCccccccccccCCCCCCcccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEc
Q 038273 17 KVFSGECNEIFVESESSHSMTPKFQLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVL 96 (623)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L 96 (623)
+.++.+++.+....... . .+|++|++++|++++..+..+..+++|++|++++|.++ .++...|..+++|++|++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---P--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCSSCCSCC---C--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCccCCCCCC---C--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEEC
Confidence 67788877665433211 2 28999999999999777778899999999999999998 677777789999999999
Q ss_pred cCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCc
Q 038273 97 RNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTG 176 (623)
Q Consensus 97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 176 (623)
++|++++..+..+..+++|++|++++|.+. .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-
Confidence 999999888888899999999999999999 677666666889999999999999777777999999999999999887
Q ss_pred ccchHHhhCCCCCCEEEcccCcCccccccccccCCC
Q 038273 177 EIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRK 212 (623)
Q Consensus 177 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 212 (623)
..+++|++|+++.|.+++.+|..++.++.
T Consensus 162 -------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34678999999999999999988776554
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.8e-20 Score=172.39 Aligned_cols=110 Identities=16% Similarity=0.258 Sum_probs=75.4
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 505 (623)
+|+.|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+++
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 44455555555554555566666777777777777776666667777777777777777776666777777777777777
Q ss_pred cCcccccCCCCccccCCCCCccccCCCCCC
Q 038273 506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 535 (623)
Q Consensus 506 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C 535 (623)
+|++++..|..+..+++|+.+++++||+.|
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 777777667667677777777777777777
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6e-19 Score=165.44 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=79.9
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 505 (623)
+|+.|++++|.++...+..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++ .+|..+..+++|++|+++
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 4444444444444344455667777888888888887766677777888888888888877 567777778888888888
Q ss_pred cCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 506 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+|++++..+..+..+++|+.+++++||+.|+|
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88887776666777788888888888888843
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.4e-18 Score=183.23 Aligned_cols=186 Identities=22% Similarity=0.283 Sum_probs=93.3
Q ss_pred CCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEe
Q 038273 65 DLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLN 144 (623)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ 144 (623)
+|++|++++|.++ .+|..+ .++|++|++++|+++. +| ..+++|++|++++|.++ .+|. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~---~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLS-TLPE-LPA---SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC-CCT---TCCEEE
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCC-Ccch-hhc---CCCEEE
Confidence 4555555555554 244432 2445555555555542 22 22445555555555555 2444 221 555555
Q ss_pred cccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCc
Q 038273 145 LSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCT 224 (623)
Q Consensus 145 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 224 (623)
+++|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 55555553 333 3455555555555554 3443 24455555555555544 222 32 55555555555555
Q ss_pred cccCccCcCCCCC-------cEEECcCCcCccccchhccCCCCCCEEECccccccccccccccC
Q 038273 225 GEIPKSLSNCSPL-------EGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQ 281 (623)
Q Consensus 225 ~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 281 (623)
.+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus 194 -~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 -SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3333 332 44 66677666666 34555555667777777777666666655544
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3e-18 Score=159.49 Aligned_cols=153 Identities=21% Similarity=0.258 Sum_probs=105.1
Q ss_pred eEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCC
Q 038273 334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGS 413 (623)
Q Consensus 334 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~ 413 (623)
+.++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|+.|++++|++.+..|..+...
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l----------- 79 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL----------- 79 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC-----------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-----------
Confidence 345566665552 333222 456666666666665555566666677777777776665555555432
Q ss_pred CCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCcccc
Q 038273 414 SAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQL 493 (623)
Q Consensus 414 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 493 (623)
++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..+
T Consensus 80 -----------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 80 -----------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp -----------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred -----------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 367777777777775555556777888888888888887777788888888888888888887777777
Q ss_pred ccCCCCCeeecccCcccc
Q 038273 494 VELNVLAVFSVAHNNLSG 511 (623)
Q Consensus 494 ~~l~~L~~L~l~~N~l~~ 511 (623)
..+++|++|++++|++.+
T Consensus 149 ~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred hCCCCCCEEEeCCCCcCC
Confidence 778888888888888765
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=7e-18 Score=177.94 Aligned_cols=186 Identities=26% Similarity=0.329 Sum_probs=102.1
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
+|++|++++|++++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 45666666666654 44433 255666666666665 555 235566666666666655 333 333 6666666
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.++ .+|. .+++|+.|++++|.+++ +|. .+++|++|++++|+++ .+|. +. ++|++|++++|.++
T Consensus 128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC--CC--TTCCEEECCSSCCS
T ss_pred CCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch--hh--CCCCEEECcCCCCC
Confidence 666665 3554 24566666666666653 333 3556666666666665 4555 22 56666666666655
Q ss_pred cccccccccCCCC-------CEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccC
Q 038273 201 GQLFYKKIYLRKL-------ARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGN 257 (623)
Q Consensus 201 ~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 257 (623)
. +|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus 194 ~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 S-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp S-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred c-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 2 222 322 44 66666666665 34554555666666666666666555555544
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.3e-18 Score=172.38 Aligned_cols=176 Identities=25% Similarity=0.239 Sum_probs=123.6
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccC-CCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEc
Q 038273 116 DTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-DMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVL 194 (623)
Q Consensus 116 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 194 (623)
++++++++.+. .+|..+. +.++.|+|++|.+++..+..+. ++++|++|++++|+++ .++...|.++++|++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 46667766666 5666543 3577777777777766666666 7777777777777777 666655667777777777
Q ss_pred ccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhc---cCCCCCCEEECccccc
Q 038273 195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL---GNLSSLNDIMMAINHL 271 (623)
Q Consensus 195 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~~ 271 (623)
++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|+|++|++++..+..| ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 7777776666667777777777777777777667777777888888888887776554444 4577788888888877
Q ss_pred cccccccccCCCC--CcEEeCcCccce
Q 038273 272 QGPIPLEFCQLNY--LEILDLSENNIS 296 (623)
Q Consensus 272 ~~~~~~~~~~l~~--L~~L~l~~n~~~ 296 (623)
....+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 7665566666665 366777777665
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=155.83 Aligned_cols=151 Identities=23% Similarity=0.251 Sum_probs=80.4
Q ss_pred EEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCC-cccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcc
Q 038273 117 TLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP-SSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLS 195 (623)
Q Consensus 117 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 195 (623)
++++++|.++ .+|..+. +.++.|++++|.+++..+ ..|.++++|++|++++|.++ .++...|.++++|++|+++
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 4555555554 4554432 244555555555554432 23455555555555555555 4444444555555555555
Q ss_pred cCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273 196 ENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272 (623)
Q Consensus 196 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 272 (623)
+|.+.+..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555544444555555555555555555555555555555555555555555555555555555555555555544
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.4e-17 Score=162.12 Aligned_cols=152 Identities=23% Similarity=0.369 Sum_probs=114.5
Q ss_pred ccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccC
Q 038273 327 FFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 406 (623)
Q Consensus 327 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 406 (623)
+..+++|++|++++|++++..+ +..+++|+.|++++|.+.+ . ..+..+++|+.|++++|++.+. ..+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~------ 131 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLV------ 131 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGG------
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhc------
Confidence 5667778888888887775444 7777888888888888764 2 3477788888888888887643 1122
Q ss_pred CCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273 407 NGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486 (623)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (623)
.+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 132 ----------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 132 ----------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ----------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 245788888888888754 567888889999999998886654 888889999999999888
Q ss_pred ccCccccccCCCCCeeecccCccccc
Q 038273 487 GKIPPQLVELNVLAVFSVAHNNLSGK 512 (623)
Q Consensus 487 ~~~p~~~~~l~~L~~L~l~~N~l~~~ 512 (623)
+. | .+..+++|+.|++++|+++..
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred CC-h-hhccCCCCCEEECcCCcccCC
Confidence 53 3 478888899999999888753
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.7e-17 Score=160.15 Aligned_cols=188 Identities=22% Similarity=0.298 Sum_probs=103.8
Q ss_pred CcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEec
Q 038273 66 LEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNL 145 (623)
Q Consensus 66 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L 145 (623)
+..+.+..+.+++..+ ...+++|+.|++++|.+++. ..+..+++|++|++++|.+. .++. + ..+++|++|++
T Consensus 26 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l-~~l~~L~~L~l 97 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLFL 97 (291)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEEC
T ss_pred HHHHHhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-c-ccCCCCCEEEC
Confidence 3344455555553222 24567778888877777654 23666777777777777776 3443 3 33567777777
Q ss_pred ccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCcc
Q 038273 146 SRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTG 225 (623)
Q Consensus 146 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 225 (623)
++|.+++ + ..+..+++|++|++++|+++ .++. +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++
T Consensus 98 ~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 98 DENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCcCCC-C-hhhccCCCCCEEECCCCcCC-CChh--hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 7777663 2 23666677777777777666 4432 34566666666666665543 344445555555555555543
Q ss_pred ccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccc
Q 038273 226 EIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQ 272 (623)
Q Consensus 226 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 272 (623)
..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred chh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 322 44455555555555544432 1 2444444444444444443
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=7.4e-17 Score=151.14 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=74.7
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
.-+.++++++++. .+|..+. ++|++|++++|.+++ ++...+..+++|++|++++|+++...+..|..+++|++|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3444555554443 2333222 445555555555552 22222345555555555555554444444455555555555
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.++ .+|...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .++...+..+++|++|++++|.+.
T Consensus 96 s~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555 344443333455555555555555 34444555555555555555555 444444445555555555555544
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.9e-18 Score=171.90 Aligned_cols=287 Identities=13% Similarity=0.061 Sum_probs=159.9
Q ss_pred CCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCc--CcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhc----
Q 038273 63 QHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLS--GPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVY---- 136 (623)
Q Consensus 63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~---- 136 (623)
+.+++.|+++++- ...-...+...+++|++|+|++|++. ...... ++.++.+.+..+ .+|...+..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence 5567777777542 11111122122677888888888776 222222 222445555544 456666666
Q ss_pred ----CCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCc----Cccccccccc
Q 038273 137 ----FPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENS----LHGQLFYKKI 208 (623)
Q Consensus 137 ----l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~ 208 (623)
+++|+.+++.+ .++.+.+.+|.+|++|+.+++.+|.+. .++...|.++.++..+...... ........|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 67777777777 676666677777778888888777777 7777777766666666554421 1222233444
Q ss_pred cCCCCC-EEecccccC-ccccCccCcCCCCCcEEECcCCcCccccchhc-cCCCCCCEEECccccccccccccccCCCCC
Q 038273 209 YLRKLA-RLHLDANYC-TGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWL-GNLSSLNDIMMAINHLQGPIPLEFCQLNYL 285 (623)
Q Consensus 209 ~~~~L~-~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 285 (623)
++..|+ .+.+..... .......-....+++.+.+.++-.. .....+ ..+++|+++++++|.+..+...+|.++++|
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 455554 333322110 0000000112234444444433111 111111 124556666666555555555555566566
Q ss_pred cEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCcee-EEeCCCCcCCCCCchhhhccccCcEEEccc
Q 038273 286 EILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV-TLDLSYNSFSGNIPYWIERLTRLRYLILAN 364 (623)
Q Consensus 286 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 364 (623)
+.+++.+| + ..++..+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++++
T Consensus 253 ~~l~l~~n-i------------------------~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 253 LKIKLPHN-L------------------------KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECCTT-C------------------------CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred CEEECCcc-c------------------------ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence 66555554 3 234555677777777 777776 66656667777777788887777
Q ss_pred ccccccCchhhcCCCCCCEEEc
Q 038273 365 NNLEGEVPNQLCRLKQLRLIDL 386 (623)
Q Consensus 365 n~l~~~~~~~~~~l~~L~~L~l 386 (623)
|.+....+.+|.++++|+.+..
T Consensus 307 n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 307 DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SCCCEECTTTTCTTCCCCEEEC
T ss_pred CccCccchhhhcCCcchhhhcc
Confidence 7777666677777777777653
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=7.7e-18 Score=179.76 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=87.2
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
+|++|++++|.+... + .+..+++|++|+|++|.+. .++. +..+++|+.|+|++|.+++. ..+..+++|++|++
T Consensus 44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL 116 (605)
T ss_dssp TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence 556666666655432 2 3555666666666666655 2333 35566666666666655542 24555556666666
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.+. .++ .+.. +++|+.|+|++|.+++. ..+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.
T Consensus 117 s~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 117 EHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp TTSCCC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred cCCCCC-CCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC-Cchh--hccCCCCCEEECcCCCCC
Confidence 666555 232 2222 45555555555555532 34555555555555555555 2322 344555555555555554
Q ss_pred cccccccccCCCCCEEecccccCc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCT 224 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~ 224 (623)
+. ..+..+++|+.|++++|.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEE
T ss_pred CC--hHHccCCCCCEEEccCCcCc
Confidence 32 23444555555555555444
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4e-17 Score=174.28 Aligned_cols=188 Identities=18% Similarity=0.232 Sum_probs=91.9
Q ss_pred ccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273 42 LESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS 121 (623)
Q Consensus 42 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 121 (623)
+..+.+..+.+....+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|++++..+ +..+++|+.|+|+
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 4444455555443222 345566666666666665 4442 3556666666666666655433 5555566666666
Q ss_pred CCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc
Q 038273 122 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG 201 (623)
Q Consensus 122 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 201 (623)
+|.+. .+| .+.. +++|+.|+|++|.+.+. ..+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.+.+
T Consensus 96 ~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 96 ENKIK-DLS-SLKD-LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp SSCCC-CCT-TSTT-CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC-CCG--GGGSCTTCSEEECCSSCCCC
T ss_pred CCCCC-CCh-hhcc-CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC-Cch--hhcccCCCCEEECcCCcCCC
Confidence 66555 233 2222 44555555555555431 23445555555555555554 331 22344555555555554444
Q ss_pred ccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCc
Q 038273 202 QLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLY 248 (623)
Q Consensus 202 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 248 (623)
..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 333 44444444444444444432 22444444444444444443
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=153.00 Aligned_cols=121 Identities=23% Similarity=0.377 Sum_probs=110.7
Q ss_pred CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273 425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV 504 (623)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 504 (623)
+++++|++++|.++ .+|..+..+++|+.|++++|.++++.+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 48999999999998 77889999999999999999999988899999999999999999999988889999999999999
Q ss_pred ccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 038273 505 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 551 (623)
Q Consensus 505 ~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~~ 551 (623)
++|+++...+..+..+++|+.+++++|||.| +|+..|...|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C-----~c~l~~l~~~~ 151 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC-----DCNMQWLSDWV 151 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC-----SGGGHHHHHHH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec-----CCcCHHHHHHH
Confidence 9999998888888899999999999999999 66655554443
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=3.2e-17 Score=149.02 Aligned_cols=132 Identities=20% Similarity=0.312 Sum_probs=117.3
Q ss_pred CEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCc-cccccccCCeeeCCCCc
Q 038273 382 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPP-QIGKLTSIRALNFSHNN 460 (623)
Q Consensus 382 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~ 460 (623)
+.+++++|.+. .+|..+ ..++++|++++|.+++..+. .+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~-~ip~~~------------------------~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~ 65 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI------------------------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65 (192)
T ss_dssp TEEECTTSCCS-SCCSCC------------------------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred CEEEcCCCCcC-cCccCC------------------------CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC
Confidence 68888888885 334322 23889999999999977664 48999999999999999
Q ss_pred ccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP 538 (623)
Q Consensus 461 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~ 538 (623)
+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++|+.+++++||+.|+|+
T Consensus 66 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999999999999999999999999989889999999999999999999999999999999999999999999543
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=7.3e-17 Score=160.45 Aligned_cols=257 Identities=12% Similarity=0.096 Sum_probs=151.1
Q ss_pred cccEEEccCCCCC--CCCCcccCCCCCCcEEEccCCCCCCcCChHHhhC--------CCCCCEEEccCCcCcCcCCCCCC
Q 038273 41 QLESVKLSGSGIH--ATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLEN--------NTNLNTLVLRNNSLSGPFRMPIQ 110 (623)
Q Consensus 41 ~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~ 110 (623)
+|++|+|++|++. ...+. .++.++.+.+..+ .+|+..|.+ +++|+.+++.+ .++.+...+|.
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred cCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 6777777777765 22221 2222444444444 456666777 88888888877 77777777788
Q ss_pred CCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCc----ccccCCcccCCCCCCC-EEEccCCcCCcccchHHhhC
Q 038273 111 PHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRND----FNGSIPSSIGDMNSLK-FLDLSHNQLTGEIPEHLVIG 185 (623)
Q Consensus 111 ~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~ 185 (623)
++++|+++++++|.+. .++...+..+.++..+...... .......+|.++..|+ .+.+... +.++..++..
T Consensus 122 ~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~ 197 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKA 197 (329)
T ss_dssp TCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHT
T ss_pred cCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhc
Confidence 8888888888888777 6666666656666666655532 1223344566666666 4444432 1444444432
Q ss_pred ---CCCCCEEEcccCcCcccccccc-ccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCC
Q 038273 186 ---CFNLEYLVLSENSLHGQLFYKK-IYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSL 261 (623)
Q Consensus 186 ---l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 261 (623)
..+++.+.+.++-.. .....+ ..+++|+.+++++|+++.+.+.+|.++++|+.+++.+| ++...+.+|.++++|
T Consensus 198 ~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp TCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence 334455555443211 111111 12566666677666666555666666667777777665 555556666666667
Q ss_pred C-EEECccccccccccccccCCCCCcEEeCcCccceeeCCCCC-CCCcccEEE
Q 038273 262 N-DIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCS-SHSTIQQVH 312 (623)
Q Consensus 262 ~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~ 312 (623)
+ .+++.. .+..+.+.+|.++++|+.+++++|.+....+..+ .+++|+.++
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6 666666 5555556666667777777766666664444333 456666654
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=7.3e-17 Score=147.55 Aligned_cols=151 Identities=16% Similarity=0.261 Sum_probs=75.0
Q ss_pred CCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCC
Q 038273 330 RSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD 409 (623)
Q Consensus 330 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~ 409 (623)
+++|+.|++++|.++ .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-------- 110 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG-------- 110 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT--------
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC--------
Confidence 345555555555555 223 3555555555555555443 1224555555555555555554433333322
Q ss_pred CCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCc-ccccCCccCCCCCCCcEEECCCCccccc
Q 038273 410 NDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN-LTGVIPVSFSNLKQVESLDVSYNNLNGK 488 (623)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (623)
+++|++|++++|.+++..|..+..+++|++|++++|. ++. +| .+..+++|+.|++++|++++.
T Consensus 111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC
T ss_pred --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh
Confidence 2355555555555554445555555555555555554 432 22 355555555555555555532
Q ss_pred CccccccCCCCCeeecccCccc
Q 038273 489 IPPQLVELNVLAVFSVAHNNLS 510 (623)
Q Consensus 489 ~p~~~~~l~~L~~L~l~~N~l~ 510 (623)
+ .+..+++|++|++++|++.
T Consensus 175 -~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 -R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -T-TGGGCSSCCEEEECBC---
T ss_pred -H-HhccCCCCCEEEeeCcccC
Confidence 2 4455555555555555543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5e-17 Score=155.68 Aligned_cols=166 Identities=20% Similarity=0.231 Sum_probs=108.2
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
++..++++++.+.+. + .+..+++|++|++++|.++ .++ . +..+++|++|++++|++++..+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 566667777776543 2 4667777888888877776 565 2 4677778888887777776544 777777777777
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.++ .+|.... ++|+.|++++|.+++. ..+..+++|++|++++|+++ .++ .+..+++|++|++++|.+.
T Consensus 93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCc
Confidence 777776 4443222 5777777777777642 34667777777777777776 454 2355666777777666665
Q ss_pred cccccccccCCCCCEEecccccCc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCT 224 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~ 224 (623)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 44 44455555555555555544
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.8e-15 Score=154.34 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=85.1
Q ss_pred CccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCc
Q 038273 228 PKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHST 307 (623)
Q Consensus 228 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 307 (623)
..+|.++++|+.+.+.++. .......|.++++|+.+.+..+ +..+...+|..+..|+.+.+..+... ..........
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence 3456666666666665442 2344555666666666666554 33344556666677776666554332 2233334556
Q ss_pred ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEcc
Q 038273 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS 387 (623)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 387 (623)
|+.+.+.... ..+...+|..+..++.+.+..+... .....|..+..++.+......+. ..+|..+.+|+.+.+.
T Consensus 232 l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred CceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccc
Confidence 6666655432 2334445667777777777655433 44455666666666666554332 2345666666666664
Q ss_pred C
Q 038273 388 N 388 (623)
Q Consensus 388 ~ 388 (623)
+
T Consensus 306 ~ 306 (394)
T 4fs7_A 306 D 306 (394)
T ss_dssp T
T ss_pred c
Confidence 3
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=2.6e-15 Score=152.28 Aligned_cols=262 Identities=12% Similarity=0.138 Sum_probs=204.2
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEc
Q 038273 41 QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHV 120 (623)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (623)
.++.+.+.+ .+...-..+|.++ +|+.+++..+ ++ .++...|.++ +|+.+.+.. .++.+...+|.++++|+.+++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 677777764 3554556677775 7999998766 55 6777777774 799999886 677777788999999999999
Q ss_pred cCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCc
Q 038273 121 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 121 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 200 (623)
++|.+. .++...+. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++ .++..+|.+ .+|+.+.+. +.+.
T Consensus 188 ~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 188 SKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp TTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCC
T ss_pred CCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCcc
Confidence 988888 78888777 578999999854 66677788999999999999875 55 788888876 789999984 4566
Q ss_pred cccccccccCCCCCEEecccccCc-----cccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccc
Q 038273 201 GQLFYKKIYLRKLARLHLDANYCT-----GEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPI 275 (623)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 275 (623)
.....+|.++++|+.+++.++.+. .+.+.+|.+|++|+.+.+.+ .++.....+|.+|++|+.+.+..+ +..+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 677788889999999999887654 46667899999999999984 477677788999999999999655 66677
Q ss_pred cccccCCCCCcEEeCcCccceeeCCCCC-CC-CcccEEEccCccc
Q 038273 276 PLEFCQLNYLEILDLSENNISGTLPSCS-SH-STIQQVHLSKNML 318 (623)
Q Consensus 276 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~-~~L~~L~l~~n~l 318 (623)
..+|.++ +|+.+++++|......+..+ .+ ..++.+++..+.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7889888 99999999987764444333 23 4678888877654
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.5e-16 Score=145.48 Aligned_cols=148 Identities=17% Similarity=0.187 Sum_probs=64.8
Q ss_pred CccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEec
Q 038273 139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHL 218 (623)
Q Consensus 139 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 218 (623)
+|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4444444444444 222 3444444444444444433 222 1233444444444444444434444444444444444
Q ss_pred ccccCccccCccCcCCCCCcEEECcCCc-CccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccc
Q 038273 219 DANYCTGEIPKSLSNCSPLEGLYMSDNN-LYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNI 295 (623)
Q Consensus 219 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 295 (623)
++|.+++..+..+..+++|++|++++|. ++. ++ .+..+++|+.|++++|.+.+.. .+..+++|+.|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 4444444334444444555555555554 332 22 3444455555555555444321 344444555555555443
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=7.2e-17 Score=154.56 Aligned_cols=167 Identities=17% Similarity=0.213 Sum_probs=118.3
Q ss_pred ccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEcc
Q 038273 308 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLS 387 (623)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 387 (623)
+..++++++.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|++.+..+ +..+++|+.|+++
T Consensus 21 l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 344444444443222 25566778888888887774 33 57777888888888888875433 7788888888888
Q ss_pred CCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCc
Q 038273 388 NNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV 467 (623)
Q Consensus 388 ~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 467 (623)
+|++++..+. . . ++|+.|++++|.+++. +.+..+++|+.|++++|.+++. .
T Consensus 94 ~N~l~~l~~~-~-----------------------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~ 144 (263)
T 1xeu_A 94 RNRLKNLNGI-P-----------------------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--V 144 (263)
T ss_dssp SSCCSCCTTC-C-----------------------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--G
T ss_pred CCccCCcCcc-c-----------------------c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--h
Confidence 8887643211 0 0 4788888888888753 3577888888888888888765 2
Q ss_pred cCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCccccc
Q 038273 468 SFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGK 512 (623)
Q Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 512 (623)
.+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 677888888888888888865 5677888888888888888755
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=2.5e-15 Score=152.36 Aligned_cols=265 Identities=13% Similarity=0.106 Sum_probs=214.7
Q ss_pred CCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCcc
Q 038273 62 NQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLV 141 (623)
Q Consensus 62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 141 (623)
-+..++.+.+.. .++ .++...|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+. .++...+..+++|+
T Consensus 111 ~~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred ecCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence 457888998875 455 6788778875 7999999876 777777888884 799999986 566 77778888899999
Q ss_pred EEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccc
Q 038273 142 YLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221 (623)
Q Consensus 142 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 221 (623)
.+++.+|+++.....+|. +.+|+.+.+..+ ++ .++...|.++++|+.+++..+ +......+|.+ .+|+.+.+. +
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence 999999999977777777 689999999855 76 899999999999999999875 66666777877 789999994 4
Q ss_pred cCccccCccCcCCCCCcEEECcCCcCc-----cccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccce
Q 038273 222 YCTGEIPKSLSNCSPLEGLYMSDNNLY-----GNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 222 ~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
.++.+...+|.++++|+.+.+.++.+. ...+..|.+|++|+.+.+. +.+..+...+|.++++|+.+.+..+ ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 566677889999999999999887664 4667889999999999999 4577777889999999999999765 55
Q ss_pred eeCCCCC-CCCcccEEEccCccccccCCCCCccCCC-ceeEEeCCCCcC
Q 038273 297 GTLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRS-SIVTLDLSYNSF 343 (623)
Q Consensus 297 ~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l 343 (623)
......+ .+ +|+.+.+.+|... .+...+|.+++ +++.+.+..+.+
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHH
Confidence 4545555 45 9999999999874 45556688774 788888876654
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=4.1e-19 Score=188.52 Aligned_cols=202 Identities=16% Similarity=0.145 Sum_probs=98.3
Q ss_pred CCCCCcEEECcCCcCccccchhccCCCCCCEEECcccc-------------ccccccccccCCCCCcEEe-CcCccceee
Q 038273 233 NCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINH-------------LQGPIPLEFCQLNYLEILD-LSENNISGT 298 (623)
Q Consensus 233 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~~~~~ 298 (623)
.+++|+.|++++|+++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3455555555555554 445555555555555554432 2334445555566666665 4444332
Q ss_pred CCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCC
Q 038273 299 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRL 378 (623)
Q Consensus 299 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 378 (623)
.|+.+.+.+|.+... + ...|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..+..+
T Consensus 424 --------~L~~l~l~~n~i~~l-~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKM-E------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHHH-H------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------hhhhhhhhccccccc-C------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 334444444443211 1 0124555555555553 233 444555555555555554 344444444
Q ss_pred CCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCC
Q 038273 379 KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSH 458 (623)
Q Consensus 379 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 458 (623)
++|+.|++++|+++ + +| .+..+++|+.|+|++
T Consensus 486 ~~L~~L~Ls~N~l~----------------------------------------------~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 486 RCLEVLQASDNALE----------------------------------------------N-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TTCCEEECCSSCCC----------------------------------------------C-CG-GGTTCSSCCEEECCS
T ss_pred CCCCEEECCCCCCC----------------------------------------------C-Cc-ccCCCCCCcEEECCC
Confidence 44444444444443 2 23 455555566666666
Q ss_pred CcccccC-CccCCCCCCCcEEECCCCcccccCccc---cccCCCCCeee
Q 038273 459 NNLTGVI-PVSFSNLKQVESLDVSYNNLNGKIPPQ---LVELNVLAVFS 503 (623)
Q Consensus 459 n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~ 503 (623)
|.+++.. |..+..+++|+.|+|++|++++.+|.. +..+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6655544 555555666666666666655443321 22355555554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.7e-16 Score=144.32 Aligned_cols=129 Identities=26% Similarity=0.369 Sum_probs=70.3
Q ss_pred eEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCch-hhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCC
Q 038273 334 VTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPN-QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDG 412 (623)
Q Consensus 334 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~ 412 (623)
+.++++++.++ .+|..+. +++++|++++|.+.+..+. .+..+++|++|++++|++++..|..+...
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---------- 77 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence 44555555554 2333222 2555566666655544332 35555555666665555554444443322
Q ss_pred CCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccc
Q 038273 413 SSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNG 487 (623)
Q Consensus 413 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (623)
++|++|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++..
T Consensus 78 ------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 78 ------------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ------------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 255555555555555555555666666666666666666666666666666666666666653
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.1e-19 Score=190.71 Aligned_cols=203 Identities=17% Similarity=0.065 Sum_probs=107.2
Q ss_pred CCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCc
Q 038273 61 YNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRL 140 (623)
Q Consensus 61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 140 (623)
..+++|+.|++++|.++ .+|..+ +.+++|+.|++++|......+. .+..+...+..|..+.. +++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~-l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQY-FSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHH-HHHH
T ss_pred ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHH-HHhc
Confidence 55677777777777776 677665 6777777777755531000000 00001122233333333 3455
Q ss_pred cEEe-cccC-------------cccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccc
Q 038273 141 VYLN-LSRN-------------DFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYK 206 (623)
Q Consensus 141 ~~L~-L~~n-------------~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 206 (623)
+.|+ ++.| .++...+ ..|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..
T Consensus 412 ~~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred ccCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchh
Confidence 5555 3333 3321111 13566666666665 4554 345666666666666665 44555
Q ss_pred cccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCcccc-chhccCCCCCCEEECcccccccccccc---ccCC
Q 038273 207 KIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNI-PAWLGNLSSLNDIMMAINHLQGPIPLE---FCQL 282 (623)
Q Consensus 207 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~---~~~l 282 (623)
+..+++|+.|++++|.+++ +| .++.+++|+.|++++|++++.. |..++.+++|+.|++++|.+.+..+.. +..+
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 5666666666666666654 33 4566666666666666666554 556666666666666666665443321 2235
Q ss_pred CCCcEEe
Q 038273 283 NYLEILD 289 (623)
Q Consensus 283 ~~L~~L~ 289 (623)
++|+.|+
T Consensus 560 p~L~~L~ 566 (567)
T 1dce_A 560 PSVSSIL 566 (567)
T ss_dssp TTCSEEE
T ss_pred cccCccC
Confidence 5555554
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=5.7e-17 Score=177.60 Aligned_cols=195 Identities=16% Similarity=0.162 Sum_probs=100.3
Q ss_pred CCCcEEECcCCccccccccccCCCCCC--cccEEEccCCCCCCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCC
Q 038273 14 SKLKVFSGECNEIFVESESSHSMTPKF--QLESVKLSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNL 91 (623)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L 91 (623)
++++.|+|..+.+.............. ++..++++.|.+. ..+..+..+++|++|+|++|.+. .+|..++ .+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFL 249 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCC
Confidence 557777777766554321110001000 2222333333332 34667777888888888888877 6777764 77888
Q ss_pred CEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccC
Q 038273 92 NTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSH 171 (623)
Q Consensus 92 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 171 (623)
++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+.. +++|++|+|++|.++ .+|..|.++++|++|+|++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 88888888887 56677778888888888888887 77777766 668888888888877 5677788888888888888
Q ss_pred CcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccc
Q 038273 172 NQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDAN 221 (623)
Q Consensus 172 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 221 (623)
|.+++.+|..+......+..+++++|.+.+..|.. |+.|+++.|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 88875555544321112223567777776655543 344455544
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=8.9e-15 Score=149.19 Aligned_cols=317 Identities=13% Similarity=0.109 Sum_probs=232.4
Q ss_pred CCCCCcccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChh
Q 038273 53 HATFPKFLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLE 132 (623)
Q Consensus 53 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 132 (623)
+..-..+|.+|.+|+.+++..+ ++ .+++..|.++.+|+.+++..+ ++.....+|.++++|+.+.+..+ +. .+...
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~ 134 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE 134 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence 3345577889999999999744 66 788888899999999999765 66666778888999988777654 33 45555
Q ss_pred hhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCC
Q 038273 133 IGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRK 212 (623)
Q Consensus 133 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 212 (623)
.+..+.. ....... ........+|.++++|+.+.+.++ +. .++...|.++.+|+.+++..+ +.......|.++..
T Consensus 135 aF~~~~~-~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~-~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 135 AFKGCDF-KEITIPE-GVTVIGDEAFATCESLEYVSLPDS-ME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTCCC-SEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeecccc-cccccCc-cccccchhhhcccCCCcEEecCCc-cc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 5554533 3333322 223345678999999999999765 34 788888889999999998765 55566678888889
Q ss_pred CCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcC
Q 038273 213 LARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSE 292 (623)
Q Consensus 213 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 292 (623)
|+.+.+..+... +.+......+|+.+.+... ++......+..+..++.+.+..+... +....|..+..++.+....
T Consensus 210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred cceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 998888766433 2233445578888888654 34455667888899999998876544 6667788888898888776
Q ss_pred ccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCc
Q 038273 293 NNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVP 372 (623)
Q Consensus 293 n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 372 (623)
..+. ......+.+|+.+.+.++ + ..+...+|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +.....
T Consensus 286 ~~i~--~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 286 VIVP--EKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp SEEC--TTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred eeec--cccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 5321 222336888999988765 3 4566777999999999999754 66566778999999999999876 665667
Q ss_pred hhhcCCCCCCEEEccCC
Q 038273 373 NQLCRLKQLRLIDLSNN 389 (623)
Q Consensus 373 ~~~~~l~~L~~L~l~~n 389 (623)
.+|.++++|+.+++..+
T Consensus 360 ~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTBTTCTTCCEEEEEGG
T ss_pred HHhhCCCCCCEEEECCC
Confidence 88999999999998754
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.5e-15 Score=136.14 Aligned_cols=113 Identities=20% Similarity=0.228 Sum_probs=104.1
Q ss_pred CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeec
Q 038273 425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSV 504 (623)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 504 (623)
++++.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 48999999999999777778899999999999999999888888999999999999999999888888899999999999
Q ss_pred ccCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 505 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 505 ~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
++|++++..+..+..+++|+.+++++||+.|++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999999887777788999999999999999944
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.2e-15 Score=133.94 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=58.1
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCC-ccCCCCCCCcEEECCCCcccccCc---cccccCCCCCe
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP-VSFSNLKQVESLDVSYNNLNGKIP---PQLVELNVLAV 501 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~ 501 (623)
+|++|++++|.+++.+|..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++++..+ ..+..+++|++
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 45555555555554455666667777777777777775422 567777788888888887775544 46777778888
Q ss_pred eecccCcccc
Q 038273 502 FSVAHNNLSG 511 (623)
Q Consensus 502 L~l~~N~l~~ 511 (623)
|++++|.+..
T Consensus 152 L~l~~n~~~~ 161 (168)
T 2ell_A 152 LDGYDREDQE 161 (168)
T ss_dssp ETTEETTSCB
T ss_pred ecCCCCChhh
Confidence 8888877663
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2e-15 Score=134.19 Aligned_cols=137 Identities=24% Similarity=0.312 Sum_probs=108.3
Q ss_pred CCceeEEeCCCCcCC-CCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCC
Q 038273 330 RSSIVTLDLSYNSFS-GNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG 408 (623)
Q Consensus 330 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~ 408 (623)
.+++++|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 467888888888887 55676677888888888888888755 66788888888888888887766655443
Q ss_pred CCCCCCCCccccCCCCCCccEEEccCCcccccC-CccccccccCCeeeCCCCcccccCC---ccCCCCCCCcEEECCCCc
Q 038273 409 DNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEI-PPQIGKLTSIRALNFSHNNLTGVIP---VSFSNLKQVESLDVSYNN 484 (623)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~ 484 (623)
+++|+.|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.
T Consensus 94 ---------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 ---------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ---------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ---------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 348888888888888542 2678899999999999999996655 578999999999999999
Q ss_pred ccccCcc
Q 038273 485 LNGKIPP 491 (623)
Q Consensus 485 l~~~~p~ 491 (623)
+. ..|+
T Consensus 159 ~~-~~~~ 164 (168)
T 2ell_A 159 DQ-EAPD 164 (168)
T ss_dssp SC-BCCS
T ss_pred hh-hccc
Confidence 87 3443
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2e-16 Score=173.27 Aligned_cols=117 Identities=25% Similarity=0.305 Sum_probs=56.4
Q ss_pred hhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCC
Q 038273 85 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL 164 (623)
Q Consensus 85 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 164 (623)
+..+++|+.|+|++|.+.. ++..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|.++ .+|..|.++++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp --CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3445555555555555442 3333334555555555555555 45544433 445555555555555 344445555555
Q ss_pred CEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcccccccc
Q 038273 165 KFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKK 207 (623)
Q Consensus 165 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 207 (623)
++|+|++|.++ .+|.. +..+++|++|+|++|.+.+..+..+
T Consensus 296 ~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SEEECCSSCCC-CCCSS-TTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CEEECCCCCCC-ccChh-hhcCCCccEEeCCCCccCCCChHHH
Confidence 55555555554 44444 2445555555555555544444433
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=131.99 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=62.8
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 505 (623)
+|+.|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|+.|+|++|+++...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 44445555555554555667777788888888888877777778888888888888888886666667778888888888
Q ss_pred cCccccc
Q 038273 506 HNNLSGK 512 (623)
Q Consensus 506 ~N~l~~~ 512 (623)
+|++.+.
T Consensus 135 ~N~~~C~ 141 (193)
T 2wfh_A 135 ANPLYCD 141 (193)
T ss_dssp SSCEECS
T ss_pred CCCeecC
Confidence 8887653
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.1e-15 Score=129.97 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=81.8
Q ss_pred ccCcEEEccccccc-ccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEcc
Q 038273 355 TRLRYLILANNNLE-GEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLS 433 (623)
Q Consensus 355 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 433 (623)
++++.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+. .+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~----------------------~l~~L~~L~Ls 72 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP----------------------KLNKLKKLELS 72 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC----------------------CCTTCCEEECC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh----------------------cCCCCCEEECC
Confidence 45666666666665 44555556666666666666666543 1111 23466666666
Q ss_pred CCcccccCCccccccccCCeeeCCCCccccc-CCccCCCCCCCcEEECCCCcccccCc---cccccCCCCCeeeccc
Q 038273 434 CNKLTGEIPPQIGKLTSIRALNFSHNNLTGV-IPVSFSNLKQVESLDVSYNNLNGKIP---PQLVELNVLAVFSVAH 506 (623)
Q Consensus 434 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~ 506 (623)
+|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6666655666666677777777777777753 23667777777777777777775554 4667777777777653
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=6e-15 Score=130.95 Aligned_cols=109 Identities=24% Similarity=0.257 Sum_probs=99.0
Q ss_pred CccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecc
Q 038273 426 KMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVA 505 (623)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 505 (623)
..+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3568999999998 5676664 799999999999999889999999999999999999998888888999999999999
Q ss_pred cCcccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 506 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 506 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
+|++++..+..+..+++|+.+++++||+.|+|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999888888889999999999999999944
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=8.1e-15 Score=127.31 Aligned_cols=127 Identities=22% Similarity=0.250 Sum_probs=76.0
Q ss_pred CCCcEEEccCCCCC-CcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccE
Q 038273 64 HDLEYVDFSDSNLK-GEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY 142 (623)
Q Consensus 64 ~~L~~L~ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 142 (623)
++|++|++++|.++ +.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCE
Confidence 34444444444444 334432 24445555555555555443 44556666666666666666445544443 567777
Q ss_pred EecccCccccc-CCcccCCCCCCCEEEccCCcCCcccch---HHhhCCCCCCEEEcc
Q 038273 143 LNLSRNDFNGS-IPSSIGDMNSLKFLDLSHNQLTGEIPE---HLVIGCFNLEYLVLS 195 (623)
Q Consensus 143 L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~ 195 (623)
|++++|.+++. .+..+..+++|++|++++|+++ .++. ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 77777777753 2366777778888888888777 5554 455677777777765
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.5e-14 Score=126.54 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=84.4
Q ss_pred CCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEc
Q 038273 115 LDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVL 194 (623)
Q Consensus 115 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 194 (623)
.+.++++++.+. .+|..+. ++|+.|++++|++++..+..+.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 355666666666 5664443 46777777777777555556677777777777777776 666655566777777777
Q ss_pred ccCcCccccccccccCCCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccc
Q 038273 195 SENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGN 250 (623)
Q Consensus 195 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 250 (623)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 77766655555555666666666666666655445556666666666666666543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=1.9e-14 Score=128.08 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=97.1
Q ss_pred cEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccC
Q 038273 428 YGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHN 507 (623)
Q Consensus 428 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N 507 (623)
+.+++++|.++ .+|..+. ++|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67999999997 6777664 79999999999999998999999999999999999999877777899999999999999
Q ss_pred cccccCCCCccccCCCCCccccCCCCCCCC
Q 038273 508 NLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 508 ~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
++++..+..+..+++|+.+++++||+.|.|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999887777889999999999999999943
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4.2e-14 Score=126.52 Aligned_cols=135 Identities=17% Similarity=0.177 Sum_probs=101.6
Q ss_pred ccCCCCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCC
Q 038273 59 FLYNQHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFP 138 (623)
Q Consensus 59 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 138 (623)
.+.++++|++|++++|.++ .+|. +....++|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 3556778888888888887 5554 323344888888888888765 57788888888888888888 56666645578
Q ss_pred CccEEecccCcccccCCc--ccCCCCCCCEEEccCCcCCcccchH---HhhCCCCCCEEEcccCcCc
Q 038273 139 RLVYLNLSRNDFNGSIPS--SIGDMNSLKFLDLSHNQLTGEIPEH---LVIGCFNLEYLVLSENSLH 200 (623)
Q Consensus 139 ~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~ 200 (623)
+|++|++++|.++. +|. .+..+++|++|++++|+++ .+|.. ++..+++|+.|+++.|...
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888888863 454 6788888888888888887 67765 4567888888888877654
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=1.9e-12 Score=131.86 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=56.7
Q ss_pred CcCCCCCCCCC-CCCEEEccCCCCCCCCChhhhhcCCCccEEecccCc---ccccCCcccCCCCCCCEEEccCCcCCccc
Q 038273 103 GPFRMPIQPHW-HLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRND---FNGSIPSSIGDMNSLKFLDLSHNQLTGEI 178 (623)
Q Consensus 103 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 178 (623)
.+...+|.++. .|+.+.+..+ ++ .|....|..+.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++ .+
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I 128 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EI 128 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EE
T ss_pred EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-ee
Confidence 33445555553 4666666543 44 4555555555566666655442 44344455555555555555433 33 45
Q ss_pred chHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEeccc
Q 038273 179 PEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDA 220 (623)
Q Consensus 179 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 220 (623)
+...|.++.+|+.+.+..+ +.......|..+..|+.+.+..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccc
Confidence 5555555555555555432 2223334444455555554443
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4e-14 Score=126.65 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=78.6
Q ss_pred hhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEE
Q 038273 351 IERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGV 430 (623)
Q Consensus 351 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 430 (623)
+..+++|+.|++++|.+.. ++......++|+.|++++|.+++. ..+. .+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~----------------------~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFP----------------------LLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCC----------------------CCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccc----------------------cCCCCCEE
Confidence 3445667777777777763 343233334777777777776543 1121 23466666
Q ss_pred EccCCcccccCCccccccccCCeeeCCCCcccccCCc--cCCCCCCCcEEECCCCcccccCcc----ccccCCCCCeeec
Q 038273 431 DLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPV--SFSNLKQVESLDVSYNNLNGKIPP----QLVELNVLAVFSV 504 (623)
Q Consensus 431 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~l 504 (623)
++++|.+++..+..+..+++|++|++++|.++. +|. .+..+++|+.|++++|++. ..|. .+..+++|++|++
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 777766665444444666666667776666653 333 5666666666666666666 3343 2566666666666
Q ss_pred ccCccc
Q 038273 505 AHNNLS 510 (623)
Q Consensus 505 ~~N~l~ 510 (623)
++|...
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 666554
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=6.7e-12 Score=127.83 Aligned_cols=334 Identities=10% Similarity=0.108 Sum_probs=190.0
Q ss_pred cCChHHhhCCC-CCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCC---CCCCCChhhhhcCCCccEEecccCcccccC
Q 038273 79 EFPNWLLENNT-NLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF---FQGNIPLEIGVYFPRLVYLNLSRNDFNGSI 154 (623)
Q Consensus 79 ~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~---l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~ 154 (623)
.|++..|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..+. ++ .+....+..+.+|+.+.+..+ ++...
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence 56666677774 5999999764 777778889999999999988763 55 677777777888888887654 45466
Q ss_pred CcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEecccccCccccCccCcCC
Q 038273 155 PSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLHLDANYCTGEIPKSLSNC 234 (623)
Q Consensus 155 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 234 (623)
..+|..+.+|+.+.+..+ +. .++...|..+.+|+.+.+..+ +.......|.+ ..|+.+.+..+.. .....+|..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c 204 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSEC 204 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTC
T ss_pred hhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhc
Confidence 778889999999999754 44 788888888999999988754 44444445543 4577776655422 2444566666
Q ss_pred CCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeCcCccceeeCCCCCCCCcccEEEcc
Q 038273 235 SPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDLSENNISGTLPSCSSHSTIQQVHLS 314 (623)
Q Consensus 235 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 314 (623)
.+++................+....... .....+.....+..+.+... +
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ip~~--------------v------ 253 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGD-----------YALIRYPSQREDPAFKIPNG--------------V------ 253 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSC-----------EEEEECCTTCCCSEEECCTT--------------E------
T ss_pred cccceecccccccccccceeeccccccc-----------ccccccccccccceEEcCCc--------------c------
Confidence 6666665544332211000000000000 00000111112222222110 0
Q ss_pred CccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCC
Q 038273 315 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQ 394 (623)
Q Consensus 315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 394 (623)
..+...+|..|..|+.+.+..+... +...+|.++++|+.+.+.. .+......+|.++.+|+.+++..+ +
T Consensus 254 -----~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v--- 322 (394)
T 4gt6_A 254 -----ARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I--- 322 (394)
T ss_dssp -----EEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C---
T ss_pred -----eEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c---
Confidence 1223344666677777666544332 4445566666666666642 343344556666666666666432 1
Q ss_pred CCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCC
Q 038273 395 IPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQ 474 (623)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 474 (623)
+.....+|.++.+|+.+.+..+ ++.+...+|.++++
T Consensus 323 -------------------------------------------~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 323 -------------------------------------------TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp -------------------------------------------CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred -------------------------------------------cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 1123345666677777777544 55455567777777
Q ss_pred CcEEECCCCcccccCccccccCCCCCeeecccCcc
Q 038273 475 VESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNL 509 (623)
Q Consensus 475 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l 509 (623)
|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 359 L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7777777765431 3455566677666665543
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.4e-15 Score=139.11 Aligned_cols=132 Identities=22% Similarity=0.289 Sum_probs=78.4
Q ss_pred hhhccccCcEEEcccccccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccE
Q 038273 350 WIERLTRLRYLILANNNLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYG 429 (623)
Q Consensus 350 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 429 (623)
.+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+.. +++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~----------------------~~~L~~ 97 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV----------------------ADTLEE 97 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH----------------------HHHCSE
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc----------------------CCcCCE
Confidence 67777777777777777764 44 6666777777777777665 23333222 135666
Q ss_pred EEccCCcccccCCccccccccCCeeeCCCCcccccCC-ccCCCCCCCcEEECCCCcccccCccc----------cccCCC
Q 038273 430 VDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIP-VSFSNLKQVESLDVSYNNLNGKIPPQ----------LVELNV 498 (623)
Q Consensus 430 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~----------~~~l~~ 498 (623)
|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+..|.. +..+++
T Consensus 98 L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 98 LWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp EEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred EECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 6666666664 23 45666666666666666664322 35566666666666666665544432 455666
Q ss_pred CCeeecccCccc
Q 038273 499 LAVFSVAHNNLS 510 (623)
Q Consensus 499 L~~L~l~~N~l~ 510 (623)
|+.|+ +|.++
T Consensus 176 L~~Ld--~~~i~ 185 (198)
T 1ds9_A 176 LKKLD--GMPVD 185 (198)
T ss_dssp CSEEC--CGGGT
T ss_pred cEEEC--CcccC
Confidence 66554 44443
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2e-15 Score=138.08 Aligned_cols=155 Identities=21% Similarity=0.248 Sum_probs=126.0
Q ss_pred hhccccCcEEEcccccccccCch------hhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCC
Q 038273 351 IERLTRLRYLILANNNLEGEVPN------QLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPL 424 (623)
Q Consensus 351 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 424 (623)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+.. +
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------l 69 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------M 69 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH----------------------H
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc----------------------C
Confidence 44556777777777777766665 89999999999999999986 44 4443 3
Q ss_pred CCccEEEccCCcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCc-cccccCCCCCeee
Q 038273 425 NKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIP-PQLVELNVLAVFS 503 (623)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ 503 (623)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+++. | .+..+++|+.|++++|++....+ +.+..+++|++|+
T Consensus 70 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 59999999999999 6788888889999999999999964 4 68889999999999999985443 5788999999999
Q ss_pred cccCcccccCCCC----------ccccCCCCCccccCCCCC
Q 038273 504 VAHNNLSGKIPEW----------TAQFTTFKEDSYEGNPLL 534 (623)
Q Consensus 504 l~~N~l~~~~~~~----------~~~~~~l~~l~l~~Np~~ 534 (623)
+++|++++..|.. +..+++|+.++ +||..
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9999998876653 56778888775 65553
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=8e-13 Score=117.15 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=95.7
Q ss_pred CCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCc
Q 038273 381 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNN 460 (623)
Q Consensus 381 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 460 (623)
.+.+++++|.++. +|..+ .++++.|++++|.+++..|..|..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~-ip~~~------------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI------------------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC------------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCCCcCc-cCccC------------------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence 4788888888864 33222 2489999999999998889999999999999999999
Q ss_pred ccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273 461 LTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 461 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 514 (623)
++++.+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus 66 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 998888889999999999999999998878889999999999999999987644
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=2.6e-13 Score=136.04 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=95.3
Q ss_pred EEEccCC-cccccCCccccccccCCeeeCCC-CcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeeccc
Q 038273 429 GVDLSCN-KLTGEIPPQIGKLTSIRALNFSH-NNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAH 506 (623)
Q Consensus 429 ~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 506 (623)
.++++++ .++ .+|. +..+++|+.|+|++ |.++++.+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4788888 888 5777 99999999999996 999988888999999999999999999999999999999999999999
Q ss_pred CcccccCCCCccccCCCCCccccCCCCCCCCC
Q 038273 507 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP 538 (623)
Q Consensus 507 N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~ 538 (623)
|++++..+..+..++ |+.+++.+|++.|+|+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 999987777776555 9999999999999653
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.5e-12 Score=114.30 Aligned_cols=108 Identities=22% Similarity=0.277 Sum_probs=93.8
Q ss_pred CEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccccccccCCeeeCCCCcc
Q 038273 382 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTSIRALNFSHNNL 461 (623)
Q Consensus 382 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 461 (623)
+.+++++|.+. .+|..+ .++|+.|++++|.+++..|..|..+++|++|+|++|.+
T Consensus 15 ~~l~~~~n~l~-~iP~~~------------------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI------------------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69 (174)
T ss_dssp SEEECCSSCCS-SCCSCC------------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCC-ccCCCc------------------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC
Confidence 67888888875 334322 24899999999999988899999999999999999999
Q ss_pred cccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCeeecccCcccccCC
Q 038273 462 TGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVFSVAHNNLSGKIP 514 (623)
Q Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 514 (623)
+++.+..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+..+
T Consensus 70 ~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 70 TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 98877889999999999999999997777779999999999999999986543
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.29 E-value=3.4e-10 Score=114.64 Aligned_cols=285 Identities=10% Similarity=0.054 Sum_probs=127.3
Q ss_pred CCCCcEEEccCCCCCCcCChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCCCCCCCChhhhhcCCCccE
Q 038273 63 QHDLEYVDFSDSNLKGEFPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVY 142 (623)
Q Consensus 63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 142 (623)
..+|+.+.+.. .++ .|++..|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .+....+..+ +|+.
T Consensus 45 ~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 45 RDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSE
T ss_pred ccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cccc
Confidence 34455555432 223 344444555555555555432 333334444443 3444444332 22 3344444332 4555
Q ss_pred EecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcc------------ccccccccC
Q 038273 143 LNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHG------------QLFYKKIYL 210 (623)
Q Consensus 143 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~ 210 (623)
+.+..+- +.....+|.++ +++...+..+ ++ .+....|..+.+++.+.+..+.... .....+...
T Consensus 118 i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 118 FEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EECCTTC-CEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred ccCCCcc-ccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 5554432 22333334333 3444444332 22 3444444555555555544332111 111122233
Q ss_pred CCCCEEecccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECccccccccccccccCCCCCcEEeC
Q 038273 211 RKLARLHLDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGPIPLEFCQLNYLEILDL 290 (623)
Q Consensus 211 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 290 (623)
..+....+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.+...+|..+.+|+.+.+
T Consensus 194 ~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 194 KTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 334444333321 1133344555556666665433 23334445555566666655443 33344445555555555555
Q ss_pred cCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEccccccccc
Q 038273 291 SENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANNNLEGE 370 (623)
Q Consensus 291 ~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 370 (623)
..+ +. .++..+|..|++|+.+.+.++.++.+...+|.++.+|+.+.+..+ +...
T Consensus 271 ~~~-i~------------------------~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 271 YAK-VK------------------------TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp CCC-CS------------------------EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred ccc-ce------------------------eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence 432 11 233334555555555555555554444455555555555555433 3333
Q ss_pred CchhhcCCCCCCEEEcc
Q 038273 371 VPNQLCRLKQLRLIDLS 387 (623)
Q Consensus 371 ~~~~~~~l~~L~~L~l~ 387 (623)
...+|.++++|+.+.+.
T Consensus 325 ~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 325 QVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTTTTTCTTCCCCCCC
T ss_pred HHHHhhCCCCCCEEEEC
Confidence 34455555555555554
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=1.5e-09 Score=109.88 Aligned_cols=299 Identities=8% Similarity=0.006 Sum_probs=141.3
Q ss_pred CCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCccccccccccCCCCCEEe
Q 038273 138 PRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKKIYLRKLARLH 217 (623)
Q Consensus 138 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 217 (623)
.+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++ .++..+|.++ +|+.+.+..+ +......+|..+ +|+.+.
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence 3455555543 244444555666666666666433 44 5555555544 4555544322 332333334332 455555
Q ss_pred cccccCccccCccCcCCCCCcEEECcCCcCccccchhccCCCCCCEEECcccccccc------------ccccccCCCCC
Q 038273 218 LDANYCTGEIPKSLSNCSPLEGLYMSDNNLYGNIPAWLGNLSSLNDIMMAINHLQGP------------IPLEFCQLNYL 285 (623)
Q Consensus 218 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~------------~~~~~~~l~~L 285 (623)
+..+ ++.....+|.++ +++.+.+..+ ++......|..+..++.+.+..+..... ....+.....+
T Consensus 120 lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp CCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred CCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 5443 222333334333 3444444322 2223334445555555555443322110 11112222333
Q ss_pred cEEeCcCccceeeCCCCCCCCcccEEEccCccccccCCCCCccCCCceeEEeCCCCcCCCCCchhhhccccCcEEEcccc
Q 038273 286 EILDLSENNISGTLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLTRLRYLILANN 365 (623)
Q Consensus 286 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 365 (623)
..+.+...... +...++..+.+++.+.+..+ +.......+.++..|+.+.+..+
T Consensus 197 ~~~~~~~~~~~-------------------------i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~ 250 (379)
T 4h09_A 197 TEFTIPSTVKT-------------------------VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN 250 (379)
T ss_dssp SEEECCTTCCE-------------------------ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT
T ss_pred cccccccceeE-------------------------Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC
Confidence 33333222111 11222444455555554432 22233344455555555555443
Q ss_pred cccccCchhhcCCCCCCEEEccCCcCcCCCCCccccccccCCCCCCCCCCCccccCCCCCCccEEEccCCcccccCCccc
Q 038273 366 NLEGEVPNQLCRLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNDGSSAPTRYKGKPLNKMYGVDLSCNKLTGEIPPQI 445 (623)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 445 (623)
++.....+|.++.+|+.+.+..+ +......++.. +.+|+.+.+.++.++.....+|
T Consensus 251 -v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~----------------------c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 251 -VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG----------------------CSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp -CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT----------------------CTTCCEEEECCTTCCEECTTTT
T ss_pred -ccEeCccccceeehhcccccccc-ceecccccccc----------------------ccccccccccccccceehhhhh
Confidence 33333445555555665555432 22222222222 2356666666555555556677
Q ss_pred cccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCC
Q 038273 446 GKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELN 497 (623)
Q Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 497 (623)
.++.+|+.+.|..+ ++.+...+|.++++|+++.+..+ ++.+...+|.+..
T Consensus 307 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 307 MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77788888888654 55566677888888888888654 5545556665543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=2.6e-13 Score=136.15 Aligned_cols=113 Identities=19% Similarity=0.115 Sum_probs=54.7
Q ss_pred CCCCEEEccCCcCcCcCCCC----CC-CCCCCCEEEccCCCCCCCCChhhhhcCCCccEEecccCcccccCCccc-----
Q 038273 89 TNLNTLVLRNNSLSGPFRMP----IQ-PHWHLDTLHVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI----- 158 (623)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~----~~-~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~i~~~~~~~~----- 158 (623)
++|+.|++++|.++...... +. ..++|++|++++|.+.+.....+...+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666654321111 11 124666666666665533233333334566666666666654333322
Q ss_pred CCCCCCCEEEccCCcCCcccchH---HhhCCCCCCEEEcccCcCcc
Q 038273 159 GDMNSLKFLDLSHNQLTGEIPEH---LVIGCFNLEYLVLSENSLHG 201 (623)
Q Consensus 159 ~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~ 201 (623)
...++|++|++++|.++...... .+..+++|++|++++|.+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 23455666666666654211111 11345555566665555543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=1.1e-12 Score=131.51 Aligned_cols=135 Identities=21% Similarity=0.142 Sum_probs=60.6
Q ss_pred CCCCEEEccCCcCCcccchHHhhCCCCCCEEEcccCcCcccccccc-----ccCCCCCEEecccccCccc----cCccCc
Q 038273 162 NSLKFLDLSHNQLTGEIPEHLVIGCFNLEYLVLSENSLHGQLFYKK-----IYLRKLARLHLDANYCTGE----IPKSLS 232 (623)
Q Consensus 162 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~ 232 (623)
++|++|++++|.++......++..+++|++|++++|.++......+ ...++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555544422222222333445555555555443222222 1234455555555544321 122234
Q ss_pred CCCCCcEEECcCCcCcccc----chhccCCCCCCEEECcccccccc----ccccccCCCCCcEEeCcCccce
Q 038273 233 NCSPLEGLYMSDNNLYGNI----PAWLGNLSSLNDIMMAINHLQGP----IPLEFCQLNYLEILDLSENNIS 296 (623)
Q Consensus 233 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~ 296 (623)
..++|++|+|++|.+++.. +..+...++|++|++++|.+... +...+...++|+.|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4555555555555554321 33344455555555555555432 1222334455666666655543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=2.2e-11 Score=121.91 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=89.8
Q ss_pred CCCccEEEccC-CcccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCcccccCccccccCCCCCee
Q 038273 424 LNKMYGVDLSC-NKLTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLNGKIPPQLVELNVLAVF 502 (623)
Q Consensus 424 ~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 502 (623)
+++|+.|+|++ |.+++..+..|..+++|+.|+|++|.|+++.|..|.++++|+.|+|++|++++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34899999996 999988888999999999999999999999999999999999999999999977777776666 9999
Q ss_pred ecccCcccccCC-CCccccCCCCCccccCCCCCCCC
Q 038273 503 SVAHNNLSGKIP-EWTAQFTTFKEDSYEGNPLLCGK 537 (623)
Q Consensus 503 ~l~~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~C~~ 537 (623)
++++|++.+... .++..+.......+..+...|..
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~ 144 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence 999999986433 12222222233344455666643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=2.6e-09 Score=106.02 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=86.1
Q ss_pred cccEEEccCCCCCC-C-------CCcccCCCCCCcEEEccCCCCC---------CcCChHHhhCCCCCCEEEccCCcCcC
Q 038273 41 QLESVKLSGSGIHA-T-------FPKFLYNQHDLEYVDFSDSNLK---------GEFPNWLLENNTNLNTLVLRNNSLSG 103 (623)
Q Consensus 41 ~L~~L~l~~~~~~~-~-------~~~~~~~~~~L~~L~ls~n~l~---------~~~~~~~~~~l~~L~~L~L~~n~i~~ 103 (623)
.++.|.+..+...+ . +..++.++++|+.|.+...... +.+. .++..+|+|+.|.+++|.-..
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce
Confidence 57788887666542 1 1233456788999988654321 1222 445778899999998773111
Q ss_pred cCCCCCCCCCCCCEEEccCCCCCCCCChhhhh-cCCCccEEecccC--cccc-----cCCccc--CCCCCCCEEEccCCc
Q 038273 104 PFRMPIQPHWHLDTLHVSKNFFQGNIPLEIGV-YFPRLVYLNLSRN--DFNG-----SIPSSI--GDMNSLKFLDLSHNQ 173 (623)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~L~~n--~i~~-----~~~~~~--~~l~~L~~L~l~~n~ 173 (623)
.+. + .+++|++|++..+.+.......+.. .+|+|+.|+|+.+ ...+ .+...+ ..+++|++|++.+|.
T Consensus 187 -l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 -IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp -CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred -ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 122 3 3778888888877665332233331 3678888887531 1110 011112 235667777776666
Q ss_pred CCcccchHHhh--CCCCCCEEEcccCcCcc
Q 038273 174 LTGEIPEHLVI--GCFNLEYLVLSENSLHG 201 (623)
Q Consensus 174 l~~~~~~~~~~--~l~~L~~L~l~~n~l~~ 201 (623)
+.+..+..++. .+++|++|+++.|.+.+
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 65333333322 24455555555555443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=1.1e-08 Score=101.44 Aligned_cols=135 Identities=20% Similarity=0.099 Sum_probs=67.4
Q ss_pred hcCCCccEEecccCcccccCCcccCCCCCCCEEEccCCcCCcccchHHh-hCCCCCCEEEcccC--cCccc-----cccc
Q 038273 135 VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQLTGEIPEHLV-IGCFNLEYLVLSEN--SLHGQ-----LFYK 206 (623)
Q Consensus 135 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n--~l~~~-----~~~~ 206 (623)
..+|+|+.|++++|.-. ..+. +. +++|++|++..+.+.......+. ..+++|++|+|+.+ ...+. +...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 33677888887776311 1222 32 67788888877776533322332 25778888877531 11110 0011
Q ss_pred c--ccCCCCCEEecccccCccccCccC---cCCCCCcEEECcCCcCcccc----chhccCCCCCCEEECcccccc
Q 038273 207 K--IYLRKLARLHLDANYCTGEIPKSL---SNCSPLEGLYMSDNNLYGNI----PAWLGNLSSLNDIMMAINHLQ 272 (623)
Q Consensus 207 ~--~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~ 272 (623)
+ ..+++|+.|++.+|.+....+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|+++.|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1 134566666666655543221111 23456666666666555432 222233455666666665554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=1e-07 Score=85.21 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=32.8
Q ss_pred cccccCCeeeCCCCccccc----CCccCCCCCCCcEEEC--CCCccccc----CccccccCCCCCeeecccCccc
Q 038273 446 GKLTSIRALNFSHNNLTGV----IPVSFSNLKQVESLDV--SYNNLNGK----IPPQLVELNVLAVFSVAHNNLS 510 (623)
Q Consensus 446 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 510 (623)
...++|++|+|++|.|.+. +...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3334555555555555432 2234444555666666 55655532 2233444556666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=5.6e-07 Score=80.39 Aligned_cols=118 Identities=11% Similarity=0.112 Sum_probs=65.9
Q ss_pred CCcccCCCCCCCEEEccCC-cCCcccchH---HhhCCCCCCEEEcccCcCcccc----ccccccCCCCCEEecccccCcc
Q 038273 154 IPSSIGDMNSLKFLDLSHN-QLTGEIPEH---LVIGCFNLEYLVLSENSLHGQL----FYKKIYLRKLARLHLDANYCTG 225 (623)
Q Consensus 154 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~~~ 225 (623)
+...+...++|++|++++| .+....... .+...++|++|++++|.+.... ...+...++|++|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4455677788888888888 776322111 1234567788888877776432 2233344566666666666653
Q ss_pred c----cCccCcCCCCCcEEEC--cCCcCcccc----chhccCCCCCCEEECccccc
Q 038273 226 E----IPKSLSNCSPLEGLYM--SDNNLYGNI----PAWLGNLSSLNDIMMAINHL 271 (623)
Q Consensus 226 ~----~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~ 271 (623)
. +...+...+.|++|++ ++|.+.... ...+...++|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 2334455556666666 556554332 22333345555555555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=2.3e-07 Score=87.14 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=53.3
Q ss_pred cccccCCeeeCCCCccccc--CCccCCCCCCCcEEECCCCcccccCccccccCC--CCCeeecccCcccccCCC------
Q 038273 446 GKLTSIRALNFSHNNLTGV--IPVSFSNLKQVESLDVSYNNLNGKIPPQLVELN--VLAVFSVAHNNLSGKIPE------ 515 (623)
Q Consensus 446 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~~~------ 515 (623)
.++++|+.|+|++|.++++ +|..+..+++|+.|+|++|++.+. +.+..+. .|++|++++|++++..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4567788888888888763 345566778888888888888754 2333333 788888888888765542
Q ss_pred -CccccCCCCCcc
Q 038273 516 -WTAQFTTFKEDS 527 (623)
Q Consensus 516 -~~~~~~~l~~l~ 527 (623)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 234566666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=1.3e-06 Score=82.00 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=64.3
Q ss_pred CCCCccEEEccCCcccc--cCCccccccccCCeeeCCCCcccccCCccCCCCC--CCcEEECCCCcccccCc-------c
Q 038273 423 PLNKMYGVDLSCNKLTG--EIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLK--QVESLDVSYNNLNGKIP-------P 491 (623)
Q Consensus 423 ~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p-------~ 491 (623)
.+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 35799999999999997 4456778999999999999999865 3344444 99999999999987655 2
Q ss_pred ccccCCCCCeee
Q 038273 492 QLVELNVLAVFS 503 (623)
Q Consensus 492 ~~~~l~~L~~L~ 503 (623)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467889998886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=2.3e-06 Score=74.24 Aligned_cols=82 Identities=9% Similarity=0.032 Sum_probs=46.4
Q ss_pred CccEEecccCcccccCCcccCCCCCCCEEEccCCc-CCcccchHHhhC----CCCCCEEEcccCc-CccccccccccCCC
Q 038273 139 RLVYLNLSRNDFNGSIPSSIGDMNSLKFLDLSHNQ-LTGEIPEHLVIG----CFNLEYLVLSENS-LHGQLFYKKIYLRK 212 (623)
Q Consensus 139 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~~~~ 212 (623)
+|+.||+++|.++...-..+.++++|++|+|++|. +++..-..+ .. +++|++|++++|. ++......+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 57777777777665555556677777777777774 442222222 22 2356666666654 55444444445555
Q ss_pred CCEEecccc
Q 038273 213 LARLHLDAN 221 (623)
Q Consensus 213 L~~L~l~~n 221 (623)
|+.|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=1.5e-06 Score=75.45 Aligned_cols=83 Identities=7% Similarity=0.053 Sum_probs=41.4
Q ss_pred CCEEEccCCcCcCcCCCCCCCCCCCCEEEccCCC-CCCCCChhhhhc---CCCccEEecccCc-ccccCCcccCCCCCCC
Q 038273 91 LNTLVLRNNSLSGPFRMPIQPHWHLDTLHVSKNF-FQGNIPLEIGVY---FPRLVYLNLSRND-FNGSIPSSIGDMNSLK 165 (623)
Q Consensus 91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~---l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~ 165 (623)
|+.|++++|.++......+.++++|++|+|++|. +++.--..+... +++|++|++++|. +++..-..++++++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 4444444444333222333445555555555553 332222223221 2357777777763 5554444566677777
Q ss_pred EEEccCCc
Q 038273 166 FLDLSHNQ 173 (623)
Q Consensus 166 ~L~l~~n~ 173 (623)
+|++++|.
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 77777764
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.94 E-value=2.2e-06 Score=71.16 Aligned_cols=68 Identities=18% Similarity=0.325 Sum_probs=44.4
Q ss_pred EEECCCCccc-ccCccccccCCCCCeeecccCcccccCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 038273 477 SLDVSYNNLN-GKIPPQLVELNVLAVFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 551 (623)
Q Consensus 477 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~Np~~C~~~l~~C~~~~~~~~~ 551 (623)
.++.+++.++ ..+|..+ .++|++|+|++|+|+...+..+..+++|+.+++++|||.| +|+..|+..|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C-----dC~l~~l~~wl 80 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC-----DCRLVPLRAWL 80 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC-----SGGGHHHHHHH
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec-----cCccHHHHHHH
Confidence 5555666554 2333322 2356777777777776666667777788888999999999 67665555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.95 E-value=0.0011 Score=54.57 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=35.8
Q ss_pred EEEccCCccc-ccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCCccc
Q 038273 429 GVDLSCNKLT-GEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYNNLN 486 (623)
Q Consensus 429 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (623)
.++.+++.++ ..+|..+. ++|+.|+|++|.|+.+.++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777665 24444333 35777777777777666666777777777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.73 E-value=0.0011 Score=58.58 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=37.2
Q ss_pred CCCCEEEcccCcCcccccc----ccccCCCCCEEecccccCccc----cCccCcCCCCCcEEECcCC---cCcc----cc
Q 038273 187 FNLEYLVLSENSLHGQLFY----KKIYLRKLARLHLDANYCTGE----IPKSLSNCSPLEGLYMSDN---NLYG----NI 251 (623)
Q Consensus 187 ~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n---~l~~----~~ 251 (623)
..|++|+|++|.+...... .+..-+.|+.|+|+.|.+... +.+++..-+.|+.|+|++| .+.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 3444444444444432222 222334455555555544421 1233444455666666543 2222 12
Q ss_pred chhccCCCCCCEEECcccc
Q 038273 252 PAWLGNLSSLNDIMMAINH 270 (623)
Q Consensus 252 ~~~l~~l~~L~~L~l~~n~ 270 (623)
...+..-+.|+.|+++.+.
T Consensus 150 a~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCCcCeEeccCCC
Confidence 2334444566666665554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.46 E-value=0.0022 Score=56.68 Aligned_cols=111 Identities=9% Similarity=0.027 Sum_probs=65.7
Q ss_pred hCCCCCCEEEcccC-cCccc----cccccccCCCCCEEecccccCccccC----ccCcCCCCCcEEECcCCcCcccc---
Q 038273 184 IGCFNLEYLVLSEN-SLHGQ----LFYKKIYLRKLARLHLDANYCTGEIP----KSLSNCSPLEGLYMSDNNLYGNI--- 251 (623)
Q Consensus 184 ~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~--- 251 (623)
..-+.|++|+++++ .+... +...+..-..|+.|+|++|.+..... +.+..-+.|+.|+|+.|.|.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34556777777764 55432 23444556678888888888764322 33345567888888888876532
Q ss_pred -chhccCCCCCCEEECccccc---cc----cccccccCCCCCcEEeCcCcc
Q 038273 252 -PAWLGNLSSLNDIMMAINHL---QG----PIPLEFCQLNYLEILDLSENN 294 (623)
Q Consensus 252 -~~~l~~l~~L~~L~l~~n~~---~~----~~~~~~~~l~~L~~L~l~~n~ 294 (623)
...+..-+.|++|+++++.. .. .+...+..-+.|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23445556678888765422 21 122334445667777776554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.97 E-value=6.8 Score=29.88 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=17.7
Q ss_pred CChHHhhCCCCCCEEEccCCcCcCcCCCCCCCCCCCCEEEcc
Q 038273 80 FPNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLHVS 121 (623)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 121 (623)
|....|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33344444444444444432 333333444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.54 E-value=25 Score=26.61 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=29.2
Q ss_pred ccccCCccccccccCCeeeCCCCcccccCCccCCCCCCCcEEECCCC
Q 038273 437 LTGEIPPQIGKLTSIRALNFSHNNLTGVIPVSFSNLKQVESLDVSYN 483 (623)
Q Consensus 437 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 483 (623)
++.....+|.++++|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34344556777777777777654 34355667777777777777554
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=22.08 E-value=40 Score=20.25 Aligned_cols=16 Identities=6% Similarity=0.233 Sum_probs=6.4
Q ss_pred hhhHHHHHHHHHhhhh
Q 038273 568 TFTSSYVIVILAIIGV 583 (623)
Q Consensus 568 ~~~~~~~~~~~~~~~~ 583 (623)
+.+++.++.+.+++++
T Consensus 15 GiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 3444444433333333
Done!