BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038282
         (234 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 /
           E 150) GN=MCH1 PE=3 SV=1
          Length = 486

 Score = 33.9 bits (76), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 30/151 (19%)

Query: 39  GEDYTILQALFSMDMLILFLATICGVGGTLLAIDN----LRQIGTSLGYPKRGISTFVSL 94
           G +   L+  F+     LFL     +GG      N    +    T         ST VSL
Sbjct: 259 GHEGATLKEFFTDKTAWLFLLCFVFIGGPFEMFQNNMGAILDTVTVENADSPSFSTHVSL 318

Query: 95  VNIWNCLGRVVSGF--------FRRPLMLTIILLVSWIGHLLIAFNVPGGL--------- 137
              ++ + R+V GF          RP++L++I LV+   HL+    VP G+         
Sbjct: 319 FATFSTVSRLVVGFSSEAMESHVSRPVLLSVIALVAACIHLM----VPSGIFTVFDNAKY 374

Query: 138 -----NIMGFNFGAQWPLVFAITSEFFGPKN 163
                 + GF++G+ + LV  I ++ +G  N
Sbjct: 375 FSVVTIVNGFSYGSSFTLVPTIVTKVWGIAN 405


>sp|Q4IM48|MCH1_GIBZE Probable transporter MCH1 OS=Gibberella zeae (strain PH-1 / ATCC
           MYA-4620 / FGSC 9075 / NRRL 31084) GN=MCH1 PE=3 SV=1
          Length = 572

 Score = 33.9 bits (76), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 112 PLMLTIILLVSWIGHLLIAFNVPGGLNIMGFNFGAQWPLVFAITSEFFGPKNHKEPE--- 168
           PLM+TII  V    +    + + G L   G  F   W LV++ T +    K+   PE   
Sbjct: 472 PLMVTIIWGVE---NFATNYGLIGMLPAAGSTF---WGLVYSATYQNGANKSKAGPEGSD 525

Query: 169 -DDLNCIGVECFKLSFIMTAATLFSAFVSLIL 199
            DDL C G +C+  ++     T++ A V L+L
Sbjct: 526 RDDLFCYGEQCYAPTYWAETITVWIA-VGLLL 556


>sp|A9JRJ2|TCPR1_XENTR Tectonin beta-propeller repeat-containing protein 1 OS=Xenopus
           tropicalis GN=tecpr1 PE=2 SV=2
          Length = 1173

 Score = 32.3 bits (72), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 122 SWIGHLLIAFNVPGGLNIMGFNFGAQWP 149
           +W+    I FNVPGG +  G+ F A +P
Sbjct: 870 TWVSDWYIDFNVPGGTDREGWQFAADFP 897


>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12)
           GN=yhjX PE=1 SV=1
          Length = 402

 Score = 30.8 bits (68), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 17/138 (12%)

Query: 40  EDYTILQALFSMD--MLILFLATICGVGGTLLAIDNLRQIGTSLGY-PKRGISTFVSLVN 96
           +DYT+ +++      ML +   T C  G  L  I   + I  SL +      +  V++++
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSG--LYVIGVAKDIAQSLAHLDVVSAANAVTVIS 260

Query: 97  IWNCLGRVVSGFFR----RPLMLTIILLVSWIGHLLIAFNVP-------GGLNIMGFNFG 145
           I N  GR+V G       R  ++TI  ++S +G   + F  P         +  + FNFG
Sbjct: 261 IANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLF-APLNAVTFFAAIACVAFNFG 319

Query: 146 AQWPLVFAITSEFFGPKN 163
               +  ++ SEFFG  N
Sbjct: 320 GTITVFPSLVSEFFGLNN 337


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.142    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,372,287
Number of Sequences: 539616
Number of extensions: 3144737
Number of successful extensions: 7560
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7559
Number of HSP's gapped (non-prelim): 7
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)