Query 038282
Match_columns 234
No_of_seqs 115 out of 1192
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.1 2.9E-10 9.9E-15 101.1 11.8 157 44-201 245-435 (451)
2 3o7q_A L-fucose-proton symport 99.1 6.8E-11 2.3E-15 104.9 5.6 151 42-193 249-426 (438)
3 1pw4_A Glycerol-3-phosphate tr 98.9 7E-10 2.4E-14 98.5 3.5 148 51-199 28-206 (451)
4 3o7q_A L-fucose-proton symport 98.8 1.5E-08 5.1E-13 89.7 9.8 97 70-166 45-153 (438)
5 4aps_A DI-OR tripeptide H+ sym 98.8 1.1E-08 3.9E-13 92.2 8.8 150 51-201 13-198 (491)
6 2xut_A Proton/peptide symporte 98.6 1.5E-07 5E-12 85.7 9.9 148 50-198 11-197 (524)
7 2cfq_A Lactose permease; trans 98.5 1.6E-07 5.6E-12 83.6 6.3 154 44-198 213-398 (417)
8 2gfp_A EMRD, multidrug resista 98.4 1E-07 3.5E-12 82.9 3.6 138 56-194 5-169 (375)
9 4gc0_A D-xylose-proton symport 98.0 1.1E-05 3.6E-10 72.5 7.9 81 86-166 55-162 (491)
10 2gfp_A EMRD, multidrug resista 98.0 8E-07 2.7E-11 77.2 -0.6 124 42-166 190-326 (375)
11 4aps_A DI-OR tripeptide H+ sym 97.7 3.7E-05 1.3E-09 69.0 6.4 147 53-201 285-473 (491)
12 2cfq_A Lactose permease; trans 97.4 0.00015 5.2E-09 64.2 5.4 78 46-123 2-84 (417)
13 4gc0_A D-xylose-proton symport 97.4 0.00062 2.1E-08 60.8 9.2 154 70-223 296-489 (491)
14 2xut_A Proton/peptide symporte 94.5 0.029 1E-06 50.4 4.3 29 139-167 414-442 (524)
15 3rko_J NADH-quinone oxidoreduc 23.2 48 0.0017 25.9 2.6 30 176-205 134-164 (184)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.14 E-value=2.9e-10 Score=101.06 Aligned_cols=157 Identities=10% Similarity=0.036 Sum_probs=119.7
Q ss_pred HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----c--chHHHHH
Q 038282 44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----F--RRPLMLT 116 (234)
Q Consensus 44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~--gr~~~l~ 116 (234)
.++.+|++.+|.+.+..++.......+..+.+.+.++ .|.++.+++.+.++.++++.+|++++|+ + +|++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 4678899999998888877766666667788888888 7999999999999999999999999999 6 8888777
Q ss_pred HHHHHHH-HHHHHHHhhc--cchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------C-------Cc
Q 038282 117 IILLVSW-IGHLLIAFNV--PGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------E-------DD 170 (234)
Q Consensus 117 ~~~~~~~-i~~~ll~~~~--~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------g-------~g 170 (234)
....+.. ++++++.... +... . +.|++.+...+....++.|.++.++.++. + .|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666655 5555544432 1111 1 77888888888888999999999887763 1 33
Q ss_pred cccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282 171 LNCIGVECFKLSFI-MTAATLFSAFVSLILVL 201 (234)
Q Consensus 171 ~~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~ 201 (234)
.+.|.. +|...|+ .+++.+++.++.+.+.+
T Consensus 405 ~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 405 YTVDFF-GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHSS-CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444 4999999 88888888877766543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.09 E-value=6.8e-11 Score=104.90 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=117.8
Q ss_pred CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHH-HHhh-CCChhhHHHHHHHHHHhcccccccccc----cchHHHH
Q 038282 42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQI-GTSL-GYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML 115 (234)
Q Consensus 42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l 115 (234)
.+.++.+|+|.+|...+..++.......+..+.+.+ .++. |.++.+++...++..++..+|+++.|+ ++|++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356789999999998888877776666677788888 8886 999999999999999999999999999 7999988
Q ss_pred HHHHHHHHHHHHHHHhhccch-h--h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC----------------CCcccccc
Q 038282 116 TIILLVSWIGHLLIAFNVPGG-L--N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP----------------EDDLNCIG 175 (234)
Q Consensus 116 ~~~~~~~~i~~~ll~~~~~~~-l--~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~----------------g~g~~~d~ 175 (234)
....++.+++++++....... . . +.|++.+..++...++..|.++.+ .++. ..|.+.|.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 329 AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777776665533322 2 2 889999999999999988888866 3221 25667777
Q ss_pred ccccHHHHH-HHHHHHHHH
Q 038282 176 VECFKLSFI-MTAATLFSA 193 (234)
Q Consensus 176 ~g~Y~~~f~-~a~~~~va~ 193 (234)
.|+|+..|+ .+++.++..
T Consensus 408 ~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 408 AGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HTSSGGGGHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 788999998 655544433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.88 E-value=7e-10 Score=98.54 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHH
Q 038282 51 MDMLILFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGH 126 (234)
Q Consensus 51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~ 126 (234)
+.++.+++..++.......+...++.+.++. .++.+.+.+.++..++..++.+++|+ +|||+++.+..++.+++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3344444444433333333445677788889 99999999999999999999999999 899999999999988888
Q ss_pred HHHHh----hccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccH
Q 038282 127 LLIAF----NVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFK 180 (234)
Q Consensus 127 ~ll~~----~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~ 180 (234)
++... ..+.. ++ +.|++.|...+...++++|.+..++.++. + ++...+..++|+
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~ 186 (451)
T 1pw4_A 107 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 186 (451)
T ss_dssp HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 77766 44433 22 88999999999999999999998887752 1 333334444599
Q ss_pred HHHH-HHHHHHHHHHHHHHH
Q 038282 181 LSFI-MTAATLFSAFVSLIL 199 (234)
Q Consensus 181 ~~f~-~a~~~~va~~l~l~l 199 (234)
.+|+ .+.+.++..++.++.
T Consensus 187 ~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 187 AALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp TCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 9999 777777766665444
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.81 E-value=1.5e-08 Score=89.71 Aligned_cols=97 Identities=10% Similarity=-0.045 Sum_probs=82.1
Q ss_pred HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHH---Hhhccch-hh---
Q 038282 70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLI---AFNVPGG-LN--- 138 (234)
Q Consensus 70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll---~~~~~~~-l~--- 138 (234)
.....+.+.++.|.|+.+.+.+.++..++..++.+++|+ +|||+.+....++.+++.++. ....+.. ++
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGL 124 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 345577788889999999999999999999999999999 899999999999988887776 3333322 22
Q ss_pred -hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282 139 -IMGFNFGAQWPLVFAITSEFFGPKNHKE 166 (234)
Q Consensus 139 -l~G~~~G~~~~~~p~l~~~~fG~~~~~~ 166 (234)
+.|++.|...+...++++|.+..++.++
T Consensus 125 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 153 (438)
T 3o7q_A 125 FIIAAGLGCLETAANPFVTVLGPESSGHF 153 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSTTHHH
T ss_pred HHHHhhHHHhhhhHHHHHHHHcCchhHHH
Confidence 8999999999999999999999888775
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.80 E-value=1.1e-08 Score=92.17 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhhhhHHhHHhhHHHHHHh------hCCChhhHHHHHHHHHHhcccccccccc-----cchHHHHHHHH
Q 038282 51 MDMLILFLATICGVGGTLLAIDNLRQIGTS------LGYPKRGISTFVSLVNIWNCLGRVVSGF-----FRRPLMLTIIL 119 (234)
Q Consensus 51 ~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~------~G~s~~~aa~~~si~~i~~~vGRl~~G~-----~gr~~~l~~~~ 119 (234)
+.+|.+++..++.....+.+...++++.++ .|.|..+.+.+.++..++..++.+++|+ +|||+++....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 356777766666555555555666666654 7999999999999999999999999998 49999999999
Q ss_pred HHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCC--C-----------------CCcccccc
Q 038282 120 LVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKE--P-----------------EDDLNCIG 175 (234)
Q Consensus 120 ~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~--~-----------------g~g~~~d~ 175 (234)
++.+++.++...+.+.. ++ +.|++.|...+..+++++|.+..++.++ . ..+.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~- 171 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE- 171 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh-
Confidence 88888887776654433 22 8899999999999999999999887432 1 1333322
Q ss_pred ccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282 176 VECFKLSFI-MTAATLFSAFVSLILVL 201 (234)
Q Consensus 176 ~g~Y~~~f~-~a~~~~va~~l~l~l~~ 201 (234)
..+|+.+|+ .+...+++.++.+...+
T Consensus 172 ~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 172 AAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 356999999 77777777666555433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.60 E-value=1.5e-07 Score=85.68 Aligned_cols=148 Identities=12% Similarity=0.070 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHHhhhhHHhHHhhHHHHHH-hhC------CChhhHHHHHHHHHHhcccccccccc----c-chHHHHHH
Q 038282 50 SMDMLILFLATICGVGGTLLAIDNLRQIGT-SLG------YPKRGISTFVSLVNIWNCLGRVVSGF----F-RRPLMLTI 117 (234)
Q Consensus 50 ~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~-~~G------~s~~~aa~~~si~~i~~~vGRl~~G~----~-gr~~~l~~ 117 (234)
++.+|.+++..++.....+.+...++.+.+ +.| .++.+.+.+.++..++..++.+++|+ + |||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 346777777777766666556666777655 578 99999999999999999999999999 7 99999999
Q ss_pred HHHHHHHHHHHHHhhc-cch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------------CCcc
Q 038282 118 ILLVSWIGHLLIAFNV-PGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------------EDDL 171 (234)
Q Consensus 118 ~~~~~~i~~~ll~~~~-~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------------g~g~ 171 (234)
..++.+++.++..... +.. ++ +.|++.|...+..+++++|.+..++.++. ..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877776654 322 22 88999999999999999999998887531 1344
Q ss_pred ccccccccHHHHH-HHHHHHHHHHHHHH
Q 038282 172 NCIGVECFKLSFI-MTAATLFSAFVSLI 198 (234)
Q Consensus 172 ~~d~~g~Y~~~f~-~a~~~~va~~l~l~ 198 (234)
+.+ ..+|+.+|+ .+++.+++.++.+.
T Consensus 171 l~~-~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 171 LLK-NFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHH-TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred Hhc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 333 346999998 77776666555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.47 E-value=1.6e-07 Score=83.58 Aligned_cols=154 Identities=10% Similarity=0.002 Sum_probs=98.7
Q ss_pred HHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHhh-C---CChhhHHHHHHHHHHhcccccccccc----cchHHHH
Q 038282 44 ILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTSL-G---YPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLML 115 (234)
Q Consensus 44 ~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~-G---~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l 115 (234)
.++.+|+|++|.+++..++............+.+.++. + .+....+...++..+++.++.++.|+ +||++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l 292 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 35688999999876654433322222223345555443 2 22344567777888888999999998 7889888
Q ss_pred HHHHHHHHHHHHHHHhhccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC------------------CCccc
Q 038282 116 TIILLVSWIGHLLIAFNVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP------------------EDDLN 172 (234)
Q Consensus 116 ~~~~~~~~i~~~ll~~~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~------------------g~g~~ 172 (234)
....++.+++++++....+.. ++ +.+++.+...+....+++|.++.+..++. ..|.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 777777766655554332222 21 56777776666677888999887766531 14455
Q ss_pred cccccccHHHHH-HHHHHHHHHHHHHH
Q 038282 173 CIGVECFKLSFI-MTAATLFSAFVSLI 198 (234)
Q Consensus 173 ~d~~g~Y~~~f~-~a~~~~va~~l~l~ 198 (234)
.|.. +|...|+ ++++++++.++.+.
T Consensus 373 ~~~~-g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 373 YESI-GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhc-CcHHHHHHHHHHHHHHHHHHHh
Confidence 5544 4888998 88888887766544
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.42 E-value=1e-07 Score=82.88 Aligned_cols=138 Identities=9% Similarity=0.135 Sum_probs=103.8
Q ss_pred HHHHHHHhhhhHHhHHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHh
Q 038282 56 LFLATICGVGGTLLAIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAF 131 (234)
Q Consensus 56 l~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~ 131 (234)
+++..++...........++.+.++.|.|+.+.+.+.++..+...++.+++|+ +|||+.+....++.+++.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 33444444444444456677888889999999999999999999999999999 79999999888888887777665
Q ss_pred hccch-hh----hHhhhhhchhhhhHHHHHHhhCCCCCCCC--------------C---CccccccccccHHHHH-HHHH
Q 038282 132 NVPGG-LN----IMGFNFGAQWPLVFAITSEFFGPKNHKEP--------------E---DDLNCIGVECFKLSFI-MTAA 188 (234)
Q Consensus 132 ~~~~~-l~----l~G~~~G~~~~~~p~l~~~~fG~~~~~~~--------------g---~g~~~d~~g~Y~~~f~-~a~~ 188 (234)
..+.. ++ +.|++.|...+...+++.|.+..++.++. + ++.+.+ ..+|+..|+ .+..
T Consensus 85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-MWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hccHHHHHHHHHHH
Confidence 43322 22 88999999999999999999998888873 1 233322 236888888 7776
Q ss_pred HHHHHH
Q 038282 189 TLFSAF 194 (234)
Q Consensus 189 ~~va~~ 194 (234)
.++..+
T Consensus 164 ~~~~~~ 169 (375)
T 2gfp_A 164 CAGVTF 169 (375)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666555
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.02 E-value=1.1e-05 Score=72.47 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHh------------------hccch-hh----
Q 038282 86 RGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAF------------------NVPGG-LN---- 138 (234)
Q Consensus 86 ~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~------------------~~~~~-l~---- 138 (234)
.+.+++.|...++..+|.+++|+ +|||+++.++.++..++.++..+ +.... ++
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 34567778888999999999999 89999999998888887665542 11111 21
Q ss_pred hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282 139 IMGFNFGAQWPLVFAITSEFFGPKNHKE 166 (234)
Q Consensus 139 l~G~~~G~~~~~~p~l~~~~fG~~~~~~ 166 (234)
+.|++.|+..+..|.+++|....++.+.
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~ 162 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGK 162 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence 8899999999999999999999988875
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.97 E-value=8e-07 Score=77.18 Aligned_cols=124 Identities=17% Similarity=0.095 Sum_probs=84.8
Q ss_pred CCHHHHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc-cchHH-HHHHH
Q 038282 42 YTILQALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF-FRRPL-MLTII 118 (234)
Q Consensus 42 ~~~~~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~-~gr~~-~l~~~ 118 (234)
.+.++.+|+|++|.+.+..++.......+....+.+.++ .|.++.+++.+.++.+++..+++++.|+ .+|.. .+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 269 (375)
T 2gfp_A 190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQS 269 (375)
T ss_dssp TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999998887776665555555666667666 7899999999999999999999999999 33332 22222
Q ss_pred HHH-HHHHHH--HHHh-hc-cch-h---h-hHhhhhhchhhhhHHHHHHhhCCCCCCC
Q 038282 119 LLV-SWIGHL--LIAF-NV-PGG-L---N-IMGFNFGAQWPLVFAITSEFFGPKNHKE 166 (234)
Q Consensus 119 ~~~-~~i~~~--ll~~-~~-~~~-l---~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~ 166 (234)
... ..++.. .... .. +.. . . +.|++.|...+...+++.|.++ ++.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~ 326 (375)
T 2gfp_A 270 VICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGT 326 (375)
T ss_dssp HHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccch
Confidence 222 222222 1111 11 111 1 1 8899999999999999999997 66664
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.75 E-value=3.7e-05 Score=68.99 Aligned_cols=147 Identities=13% Similarity=0.037 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHH-----HHHHHH
Q 038282 53 MLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLT-----IILLVS 122 (234)
Q Consensus 53 F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~-----~~~~~~ 122 (234)
++.+++..++...........++.+.++ .+.+....+...++.++...++.++.|+ ++||+... ...++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 4444444433333333344556666666 4666556677777888888888888888 66654332 555555
Q ss_pred HHHHHHHHhhc---------cchh----h-hHhhhhhchhhhhHHHHHHhhCCCCCCCC-----------------CCcc
Q 038282 123 WIGHLLIAFNV---------PGGL----N-IMGFNFGAQWPLVFAITSEFFGPKNHKEP-----------------EDDL 171 (234)
Q Consensus 123 ~i~~~ll~~~~---------~~~l----~-l~G~~~G~~~~~~p~l~~~~fG~~~~~~~-----------------g~g~ 171 (234)
+++++++.... +... + +.|++.+...+....++.|.++.++.++. ..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 365 GLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443311 1111 2 88999999899999999999999988874 1333
Q ss_pred ccccccccHHHHH-HHHHHHHHHHHHHHHHh
Q 038282 172 NCIGVECFKLSFI-MTAATLFSAFVSLILVL 201 (234)
Q Consensus 172 ~~d~~g~Y~~~f~-~a~~~~va~~l~l~l~~ 201 (234)
..| .+|...|. .+++++++.++.+...+
T Consensus 445 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 445 YNA--KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp GGG--SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred Hhc--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 35778888 77777777776665443
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.40 E-value=0.00015 Score=64.22 Aligned_cols=78 Identities=9% Similarity=-0.088 Sum_probs=63.3
Q ss_pred HHhccHHHHHHHHHHHHhhhhHHhHHhhHHHHHHh-hCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHH
Q 038282 46 QALFSMDMLILFLATICGVGGTLLAIDNLRQIGTS-LGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILL 120 (234)
Q Consensus 46 ~~lk~~~F~~l~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~ 120 (234)
+.+|+|+||.+....++.......+...++.+.++ .|.|+.+.+.+.++..++..++++++|+ +|||+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~ 81 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 46899999988877666554444455678887765 7999999999999999999999999999 899998887666
Q ss_pred HHH
Q 038282 121 VSW 123 (234)
Q Consensus 121 ~~~ 123 (234)
+.+
T Consensus 82 ~~~ 84 (417)
T 2cfq_A 82 GML 84 (417)
T ss_dssp HTT
T ss_pred HHH
Confidence 554
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.38 E-value=0.00062 Score=60.83 Aligned_cols=154 Identities=14% Similarity=0.067 Sum_probs=86.7
Q ss_pred HHhhHHHHHHhhCCChhhHHHHHHHHHHhcccccccccc----cchHHHHHHHHHHHHHHHHHHHhh---ccch---hh-
Q 038282 70 AIDNLRQIGTSLGYPKRGISTFVSLVNIWNCLGRVVSGF----FRRPLMLTIILLVSWIGHLLIAFN---VPGG---LN- 138 (234)
Q Consensus 70 ~~~~~~~~~~~~G~s~~~aa~~~si~~i~~~vGRl~~G~----~gr~~~l~~~~~~~~i~~~ll~~~---~~~~---l~- 138 (234)
+..+.+.+.+..+.+.........+.++...++.++.++ +|||+.+......+.++++.+... .... +.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 375 (491)
T 4gc0_A 296 VLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 375 (491)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 445566677778888877777777888888888888888 799998888777777766555332 1111 11
Q ss_pred --hHhhhhh-chhhhhHHHHHHhhCCCCCCCC----------C---Ccc----ccc-----cccccHHHHH-HHHHHHHH
Q 038282 139 --IMGFNFG-AQWPLVFAITSEFFGPKNHKEP----------E---DDL----NCI-----GVECFKLSFI-MTAATLFS 192 (234)
Q Consensus 139 --l~G~~~G-~~~~~~p~l~~~~fG~~~~~~~----------g---~g~----~~d-----~~g~Y~~~f~-~a~~~~va 192 (234)
++..+++ +..++...+++|+|.++..++. + .+. +.+ ....+..+|+ .+++++++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 2222222 2334556788999998877652 0 111 100 1123445677 88888888
Q ss_pred HHHHHHH-HhhhhhhhH--HHHHHHhhhHHhhcc
Q 038282 193 AFVSLIL-VLMTRKFYK--SDIHQRFREAAAKSA 223 (234)
Q Consensus 193 ~~l~l~l-~~~~~~~~~--~~~~~~~~~~~~~~~ 223 (234)
+++.++. +.++.|... |.++++++.|+++++
T Consensus 456 ~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~~~ 489 (491)
T 4gc0_A 456 ALFMWKFVPETKGKTLEELEALWEPETKKTQQTA 489 (491)
T ss_dssp HHHHHHHCCCCTTCCHHHHGGGTC----------
T ss_pred HHHHHheecCCCCCCHHHHHHHhCCCCcccccCC
Confidence 8776554 433444332 234444444444443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.46 E-value=0.029 Score=50.36 Aligned_cols=29 Identities=3% Similarity=-0.188 Sum_probs=26.1
Q ss_pred hHhhhhhchhhhhHHHHHHhhCCCCCCCC
Q 038282 139 IMGFNFGAQWPLVFAITSEFFGPKNHKEP 167 (234)
Q Consensus 139 l~G~~~G~~~~~~p~l~~~~fG~~~~~~~ 167 (234)
+.|++.+...+....++.|.++.++.++.
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 442 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTI 442 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHH
Confidence 88999999999999999999999988874
No 15
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=23.25 E-value=48 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=22.9
Q ss_pred ccccHHHHH-HHHHHHHHHHHHHHHHhhhhh
Q 038282 176 VECFKLSFI-MTAATLFSAFVSLILVLMTRK 205 (234)
Q Consensus 176 ~g~Y~~~f~-~a~~~~va~~l~l~l~~~~~~ 205 (234)
.+.|-.+|- .+.+.+++.+-...+.+|+++
T Consensus 134 ft~Y~lpFElaSvlLLvAmIGAIvLarr~~~ 164 (184)
T 3rko_J 134 FGPYVLAVELASMLLLAGLVVAFHVGREERA 164 (184)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 478999999 888888888877777655433
Done!