BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038284
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
PE=2 SV=2
Length = 184
Score = 270 bits (691), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 128/184 (69%), Positives = 146/184 (79%)
Query: 1 MGAKSCIIIFFFMVLATSSPSTGRKKQYKSCKELLLYFHDVIYNGKNKENATSAIVAAPE 60
MG+K ++ F M+ A SS ++K YK CK L+ YFHD++YNGKN NATSAIVAAPE
Sbjct: 1 MGSKLLVLFVFVMLFALSSAIPNKRKPYKPCKNLVFYFHDILYNGKNAANATSAIVAAPE 60
Query: 61 GANLTILAGNFHFGNIAVFDDPITLDNNFHSKPVGRAQGMYIYDTKNTYTSWLGFTFVLN 120
G +LT LA HFGNI VFDDPITL ++ SK VGRAQG YIYDTKNTYTSWL FTFVLN
Sbjct: 61 GVSLTKLAPQSHFGNIIVFDDPITLSHSLSSKQVGRAQGFYIYDTKNTYTSWLSFTFVLN 120
Query: 121 STDYQGTINFIGADPIMIKTRDISVVGGTGDFFMHRGVATLMTDAFEGDVYFRLRVDIKF 180
ST +QGTI F GADPI+ KTRDISV GGTGDFFMHRG+AT+ TDAFEG+ YFRL V IKF
Sbjct: 121 STHHQGTITFAGADPIVAKTRDISVTGGTGDFFMHRGIATITTDAFEGEAYFRLGVYIKF 180
Query: 181 YECW 184
+ECW
Sbjct: 181 FECW 184
>sp|A5ISW6|EBH_STAA9 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain JH9) GN=ebh PE=4 SV=1
Length = 10624
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 33/114 (28%)
Query: 39 HDVIYNGKN---------------------KENATSAIVAAPEGANLTILAGNFHFGNIA 77
+DVIYNG E A AI AP GAN T+ N H GN+
Sbjct: 2185 YDVIYNGHTFATSLPAKFVVKDVQPAKPTVTETAAGAITIAP-GANQTV---NTHAGNVT 2240
Query: 78 VFDDPITLDNNFHSKPVGRAQGMYIYDTKNTYTSWLGFTFVLNSTDYQGTINFI 131
+ D + + N + + +N + W+ N T GT N I
Sbjct: 2241 TYADKLVIKRN--------GNVVTTFTRRNNTSPWVKEASADNVTGIVGTNNGI 2286
>sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain JH1) GN=ebh PE=4 SV=1
Length = 10624
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 33/114 (28%)
Query: 39 HDVIYNGKN---------------------KENATSAIVAAPEGANLTILAGNFHFGNIA 77
+DVIYNG E A AI AP GAN T+ N H GN+
Sbjct: 2185 YDVIYNGHTFATSLPAKFVVKDVQPAKPTVTETAAGAITIAP-GANQTV---NTHAGNVT 2240
Query: 78 VFDDPITLDNNFHSKPVGRAQGMYIYDTKNTYTSWLGFTFVLNSTDYQGTINFI 131
+ D + + N + + +N + W+ N T GT N I
Sbjct: 2241 TYADKLVIKRN--------GNVVTTFTRRNNTSPWVKEASADNVTGIVGTNNGI 2286
>sp|P52540|UL52_HHV6Z DNA helicase/primase complex protein OS=Human herpesvirus 6B
(strain Z29) GN=U43 PE=3 SV=1
Length = 860
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 101 YIYDTKNTYTSWLGFTFVLNSTDYQGTINFIGADPIMIKTRDISVVGGTGDFFMHRGVAT 160
YIY NT F N T Y + IG R++ ++G + +H +
Sbjct: 252 YIYIAYNTALETTKFVNYCNITSYDSNLP-IGQQC----QRNVHILGNS----LHENLLC 302
Query: 161 LMTDAFEGDVYFRLRVDIK 179
+M F D YF+ +DIK
Sbjct: 303 IMKQYFNADCYFKTYIDIK 321
>sp|A5FJZ1|PNP_FLAJ1 Polyribonucleotide nucleotidyltransferase OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=pnp
PE=3 SV=1
Length = 714
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 114 GFTFVLNSTDYQGTINFIGADPIMIKT 140
G T V+N D QG + +G DP IKT
Sbjct: 589 GTTIVINEVDEQGVVEILGTDPEGIKT 615
>sp|P52467|UL52_HHV6U DNA helicase/primase complex protein OS=Human herpesvirus 6A
(strain Uganda-1102) GN=U43 PE=3 SV=1
Length = 860
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 101 YIYDTKNTYTSWLGFTFVLNSTDYQGTINFIGADPIMIKTRDISVVGGTGDFFMHRGVAT 160
YIY NT F N T Y + IG R++ ++G + +H +
Sbjct: 252 YIYIAYNTALETTKFVNYCNLTSYDSNLP-IGQQC----QRNLHILGNS----LHENLLC 302
Query: 161 LMTDAFEGDVYFRLRVDIK 179
+M F D YF+ +DIK
Sbjct: 303 IMKQYFNADCYFKTYIDIK 321
>sp|Q940A2|P2C31_ARATH Protein kinase and PP2C-like domain-containing protein
OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1
Length = 658
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 95 GRAQGMYIYDTKNTYTSWLGFTFVLNSTDYQGTINFIGADPIMIKTRDISVV 146
G+ QG + T N+ + G + NS DY+ T+N+ + K +S V
Sbjct: 320 GKQQGHLLEKTSNSQSDTDGADIIKNSGDYRDTVNWFSQGECLSKKSSVSTV 371
>sp|Q7A5M1|EBHB_STAAN Extracellular matrix-binding protein EbhB OS=Staphylococcus aureus
(strain N315) GN=ebhB PE=4 SV=1
Length = 3890
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 33/114 (28%)
Query: 39 HDVIYNGKN---------------------KENATSAIVAAPEGANLTILAGNFHFGNIA 77
+DVIYNG E A AI AP GAN T+ N H GN+
Sbjct: 2185 YDVIYNGHTFATSLPAKFVVKDVQPAKPTVTETAAGAITIAP-GANQTV---NTHAGNVT 2240
Query: 78 VFDDPITLDNNFHSKPVGRAQGMYIYDTKNTYTSWLGFTFVLNSTDYQGTINFI 131
+ D + + N + + +N + W+ N T GT N I
Sbjct: 2241 TYADKLVIKRN--------GNVVTTFTRRNNTSPWVKEASADNVTGIVGTNNGI 2286
>sp|Q99U53|EBHB_STAAM Extracellular matrix-binding protein EbhB OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=ebhB PE=4 SV=1
Length = 3890
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 33/114 (28%)
Query: 39 HDVIYNGKN---------------------KENATSAIVAAPEGANLTILAGNFHFGNIA 77
+DVIYNG E A AI AP GAN T+ N H GN+
Sbjct: 2185 YDVIYNGHTFATSLPAKFVVKDVQPAKPTVTETAAGAITIAP-GANQTV---NTHAGNVT 2240
Query: 78 VFDDPITLDNNFHSKPVGRAQGMYIYDTKNTYTSWLGFTFVLNSTDYQGTINFI 131
+ D + + N + + +N + W+ N T GT N I
Sbjct: 2241 TYADKLVIKRN--------GNVVTTFTRRNNTSPWVKEASADNVTGIVGTNNGI 2286
>sp|A7X2C5|EBHB_STAA1 Extracellular matrix-binding protein EbhB OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=ebhB PE=4 SV=1
Length = 3890
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 33/114 (28%)
Query: 39 HDVIYNGKN---------------------KENATSAIVAAPEGANLTILAGNFHFGNIA 77
+DVIYNG E A AI AP GAN T+ N H GN+
Sbjct: 2185 YDVIYNGHTFATSLPAKFVVKDVQPAKPTVTETAAGAITIAP-GANQTV---NTHAGNVT 2240
Query: 78 VFDDPITLDNNFHSKPVGRAQGMYIYDTKNTYTSWLGFTFVLNSTDYQGTINFI 131
+ D + + N + + +N + W+ N T GT N I
Sbjct: 2241 TYADKLVIKRN--------GNVVTTFTRRNNTSPWVKEASADNVTGIVGTNNGI 2286
>sp|B4M0H8|SPAST_DROVI Spastin OS=Drosophila virilis GN=spas PE=3 SV=1
Length = 769
Score = 30.0 bits (66), Expect = 9.5, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 43 YNGKNKENATSAIVAAPEGANLTILAGNFHFGNIAVFDDPITLDNNFHSKPVGRAQG 99
Y K TS V A G LTI GN GN+AV + TL N SK + G
Sbjct: 360 YGPKTGGATTSKAVPAASGRKLTI--GNKRPGNLAVANKSQTLPRNLGSKTTSTSVG 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,233,877
Number of Sequences: 539616
Number of extensions: 3012464
Number of successful extensions: 7337
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7334
Number of HSP's gapped (non-prelim): 17
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)