Query 038284
Match_columns 184
No_of_seqs 114 out of 538
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 5.4E-50 1.2E-54 317.3 18.6 142 30-182 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.9 0.00056 1.2E-08 55.4 13.9 94 71-170 34-131 (176)
3 PLN02343 allene oxide cyclase 97.1 0.019 4.1E-07 48.3 13.3 93 71-169 85-181 (229)
4 PF07172 GRP: Glycine rich pro 84.3 0.18 3.9E-06 37.5 -1.2 21 1-21 1-23 (95)
5 PF11528 DUF3224: Protein of u 81.7 20 0.00044 28.1 9.3 75 91-165 40-120 (134)
6 PF10731 Anophelin: Thrombin i 39.9 15 0.00032 25.4 0.9 21 1-21 1-22 (65)
7 PF12272 DUF3610: Protein of u 25.5 98 0.0021 25.2 3.6 27 1-27 1-27 (157)
8 PF08239 SH3_3: Bacterial SH3 22.1 76 0.0016 19.8 2.0 16 82-97 4-19 (55)
9 PF06347 SH3_4: Bacterial SH3 19.7 79 0.0017 20.1 1.7 16 82-97 6-21 (55)
10 PF02950 Conotoxin: Conotoxin; 19.3 37 0.0008 23.1 0.0 14 3-16 2-15 (75)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=5.4e-50 Score=317.29 Aligned_cols=142 Identities=37% Similarity=0.675 Sum_probs=128.3
Q ss_pred ceeEEEEEEeeeecCCCCCCCccEEEeeccCCCcccccccCCCceeEEEEecceecCCCCCCCceeeeEEEEEEecCCCe
Q 038284 30 SCKELLLYFHDVIYNGKNKENATSAIVAAPEGANLTILAGNFHFGNIAVFDDPITLDNNFHSKPVGRAQGMYIYDTKNTY 109 (184)
Q Consensus 30 k~t~l~fY~Hd~~~~g~~~pn~ta~~Va~p~~~~~~~~~~~~~FG~~~V~Dd~LT~gp~~~S~~VGRaQG~~~~~s~~~~ 109 (184)
|++||+|||||++ ++||+|++.|+.|++.+ +.+||+++|+|||||+||+++||+||||||+|+.+++++.
T Consensus 1 ~~t~l~fY~H~~~----~g~n~t~~~v~~~~~~~------~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~ 70 (144)
T PF03018_consen 1 KETHLHFYMHDIV----SGPNPTAVVVAEPPGPS------SSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGS 70 (144)
T ss_pred CceEEEEEeeecC----CCCCCCEEEeccCCCCC------CCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCc
Confidence 6899999999998 35999999999887532 2489999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEecCCcCC-eEEEEcCCCCCCcceeeEEeeccccccceeeEEEEEeE-EecCcEEEEEEEEEEEEE
Q 038284 110 TSWLGFTFVLNSTDYQG-TINFIGADPIMIKTRDISVVGGTGDFFMHRGVATLMTD-AFEGDVYFRLRVDIKFYE 182 (184)
Q Consensus 110 ~~~~~~~~vF~~g~~~G-Tl~v~G~~~~~~~~rElaVVGGTG~Fr~ArGya~~~t~-~~~~~~~~~l~~~v~l~~ 182 (184)
+++++++++|++++||| ||+++|+++..+++||||||||||+||||||||+++++ ...+.. .+++++|+|+|
T Consensus 71 ~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~~~~~~~~-~v~e~~v~~~h 144 (144)
T PF03018_consen 71 SWFMSFTLVFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTVFDSSGGN-AVLELNVHLFH 144 (144)
T ss_pred cEEEEEEEEEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEEeecCCCC-EEEEEEEEEEC
Confidence 99999999999999999 99999999998999999999999999999999999999 554433 66777777764
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.92 E-value=0.00056 Score=55.35 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=67.8
Q ss_pred CCceeEEEEecceecCCCCCCCceeeeEEEEEEec----CCCeeEEEEEEEEEecCCcCCeEEEEcCCCCCCcceeeEEe
Q 038284 71 FHFGNIAVFDDPITLDNNFHSKPVGRAQGMYIYDT----KNTYTSWLGFTFVLNSTDYQGTINFIGADPIMIKTRDISVV 146 (184)
Q Consensus 71 ~~FG~~~V~Dd~LT~gp~~~S~~VGRaQG~~~~~s----~~~~~~~~~~~~vF~~g~~~GTl~v~G~~~~~~~~rElaVV 146 (184)
...|+.+-|.|+|.+|.- -+-+|--+|+-+.-. +.+..+=-.+++.|- + -|.|+++|..... .+.-++|.
T Consensus 34 nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryEaiySfyfG--d-yGhISvqGpy~t~-eDtyLAVT 107 (176)
T PF06351_consen 34 NSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYEAIYSFYFG--D-YGHISVQGPYLTY-EDTYLAVT 107 (176)
T ss_dssp S-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEEEEEEEE-G--G-GEEEEEEEEEETT-S-EEEEEE
T ss_pred hhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEEEEEEEEec--c-cceEEEecccccc-cceeEEEe
Confidence 458999999999999966 578999999976643 233233345666673 3 4699999997654 35679999
Q ss_pred eccccccceeeEEEEEeEEecCcE
Q 038284 147 GGTGDFFMHRGVATLMTDAFEGDV 170 (184)
Q Consensus 147 GGTG~Fr~ArGya~~~t~~~~~~~ 170 (184)
||||-|+.|+|-++++...+.-..
T Consensus 108 GGtGiF~g~~GqVkL~qivfPfKl 131 (176)
T PF06351_consen 108 GGTGIFEGVYGQVKLHQIVFPFKL 131 (176)
T ss_dssp EEEETTTT-EEEEEEEEEETTTEE
T ss_pred ccCceeecceEEEEEEEeecceEE
Confidence 999999999999999988776544
No 3
>PLN02343 allene oxide cyclase
Probab=97.14 E-value=0.019 Score=48.32 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCceeEEEEecceecCCCCCCCceeeeEEEEEEecC----CCeeEEEEEEEEEecCCcCCeEEEEcCCCCCCcceeeEEe
Q 038284 71 FHFGNIAVFDDPITLDNNFHSKPVGRAQGMYIYDTK----NTYTSWLGFTFVLNSTDYQGTINFIGADPIMIKTRDISVV 146 (184)
Q Consensus 71 ~~FG~~~V~Dd~LT~gp~~~S~~VGRaQG~~~~~s~----~~~~~~~~~~~vF~~g~~~GTl~v~G~~~~~~~~rElaVV 146 (184)
...|+++-|.|.|.+|.- -+-+|--.|+-+.-.. .+..+=-.+++.|- + -|.|+|+|.....+ +.-++|.
T Consensus 85 ~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfG--D-yGHisvqGpyltye-Dt~LaiT 158 (229)
T PLN02343 85 NALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFG--D-YGHISVQGPYLTYE-DTYLAIT 158 (229)
T ss_pred ccccceeccccccccchh--hhhhcccceeEEEEEeccccCCceeEEEEEEEec--C-cceeEEeccccccc-cceEEee
Confidence 458999999999998843 4568888898665432 23344456777783 3 46999999987643 4579999
Q ss_pred eccccccceeeEEEEEeEEecCc
Q 038284 147 GGTGDFFMHRGVATLMTDAFEGD 169 (184)
Q Consensus 147 GGTG~Fr~ArGya~~~t~~~~~~ 169 (184)
||+|-|+.|+|-+++..+.+.-.
T Consensus 159 GGsGiFega~GqvkL~qivfPfK 181 (229)
T PLN02343 159 GGSGIFEGAYGQVKLHQIVFPFK 181 (229)
T ss_pred cCcceeecceeEEEEeeeeeeee
Confidence 99999999999999988776543
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=84.28 E-value=0.18 Score=37.51 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=12.2
Q ss_pred CCCceeeeeh--hhHHHHhcCCC
Q 038284 1 MGAKSCIIIF--FFMVLATSSPS 21 (184)
Q Consensus 1 m~~~~~~~~~--~~~~~~~~~~~ 21 (184)
|+||+++|+. |.++++++++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 9999866442 23444455444
No 5
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=81.67 E-value=20 Score=28.14 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=44.9
Q ss_pred CCceeeeEEEEEEecC-CCeeEEEEEEEEE-ecCCcCCeEEE--EcCCCCCCcceeeEEe--eccccccceeeEEEEEeE
Q 038284 91 SKPVGRAQGMYIYDTK-NTYTSWLGFTFVL-NSTDYQGTINF--IGADPIMIKTRDISVV--GGTGDFFMHRGVATLMTD 164 (184)
Q Consensus 91 S~~VGRaQG~~~~~s~-~~~~~~~~~~~vF-~~g~~~GTl~v--~G~~~~~~~~rElaVV--GGTG~Fr~ArGya~~~t~ 164 (184)
-.+.|++++-|+.+-. ++...++.+-.+= +-...+||+.+ .|.........+|-|| -|||++...+|-..++..
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~~ 119 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITID 119 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEEC
Confidence 3467888888887744 4555555544211 11234555544 4444333345679999 999999999999987765
Q ss_pred E
Q 038284 165 A 165 (184)
Q Consensus 165 ~ 165 (184)
.
T Consensus 120 ~ 120 (134)
T PF11528_consen 120 E 120 (134)
T ss_dssp T
T ss_pred C
Confidence 5
No 6
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=39.95 E-value=15 Score=25.44 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=12.7
Q ss_pred CCCceeeeehh-hHHHHhcCCC
Q 038284 1 MGAKSCIIIFF-FMVLATSSPS 21 (184)
Q Consensus 1 m~~~~~~~~~~-~~~~~~~~~~ 21 (184)
|++|-+++.|| +-|+++++++
T Consensus 1 MA~Kl~vialLC~aLva~vQ~A 22 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSA 22 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcC
Confidence 89984444466 4455566555
No 7
>PF12272 DUF3610: Protein of unknown function (DUF3610); InterPro: IPR022058 This domain family is found in eukaryotes, and is typically between 146 and 160 amino acids in length. There are two conserved sequence motifs: FNN and IDS.
Probab=25.47 E-value=98 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=19.6
Q ss_pred CCCceeeeehhhHHHHhcCCCCCCccC
Q 038284 1 MGAKSCIIIFFFMVLATSSPSTGRKKQ 27 (184)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (184)
|.++++.+||...+.+++++++-...+
T Consensus 1 M~s~~~~fili~ili~Ls~~~~v~~~~ 27 (157)
T PF12272_consen 1 MKSKSLRFILIPILIALSHGTPVDREE 27 (157)
T ss_pred CCCceEEEEehHHHHHhcCCCCCCccc
Confidence 888888877777777888887555443
No 8
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=22.10 E-value=76 Score=19.83 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=13.3
Q ss_pred ceecCCCCCCCceeee
Q 038284 82 PITLDNNFHSKPVGRA 97 (184)
Q Consensus 82 ~LT~gp~~~S~~VGRa 97 (184)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 4788899999999885
No 9
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=19.73 E-value=79 Score=20.11 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.8
Q ss_pred ceecCCCCCCCceeee
Q 038284 82 PITLDNNFHSKPVGRA 97 (184)
Q Consensus 82 ~LT~gp~~~S~~VGRa 97 (184)
+|+.+|+.+|+++.++
T Consensus 6 ~lr~~P~~~~~vv~~l 21 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARL 21 (55)
T ss_pred EEEcCCCCCCCEEEEE
Confidence 6889999999999775
No 10
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=19.33 E-value=37 Score=23.09 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=0.0
Q ss_pred CceeeeehhhHHHH
Q 038284 3 AKSCIIIFFFMVLA 16 (184)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (184)
|+++++|..+||++
T Consensus 2 KLt~vliVavLllt 15 (75)
T PF02950_consen 2 KLTCVLIVAVLLLT 15 (75)
T ss_dssp --------------
T ss_pred CcchHHHHHHHHHH
Confidence 56666554444444
Done!