Query 038284
Match_columns 184
No_of_seqs 114 out of 538
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:08:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 1E-07 3.4E-12 76.8 11.5 94 71-170 43-140 (188)
2 4h6b_A Allene oxide cyclase; B 98.5 1.2E-06 4E-11 70.8 12.5 96 71-172 51-150 (195)
3 2q03_A Uncharacterized protein 54.0 68 0.0023 24.2 11.7 86 91-177 45-136 (138)
4 2ooj_A Hypothetical protein; s 51.0 78 0.0027 23.9 13.2 85 91-177 41-132 (141)
5 2krs_A Probable enterotoxin; a 14.2 91 0.0031 20.2 2.0 16 82-97 12-27 (74)
6 2kt8_A Probable surface protei 12.5 1.3E+02 0.0046 19.6 2.5 16 82-97 14-29 (76)
7 3h6j_A Neuraminidase, sialidas 12.4 2E+02 0.0068 24.4 3.9 56 106-163 370-436 (438)
8 2kq8_A Cell WALL hydrolase; GF 12.3 64 0.0022 20.7 0.7 16 82-97 13-28 (70)
9 4ank_A Transthyretin; hormone 8.3 1.1E+02 0.0038 23.3 0.9 11 1-11 1-11 (147)
10 2eng_A Endoglucanase V; cellul 6.6 2.7E+02 0.0093 22.5 2.4 40 113-152 88-132 (210)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.74 E-value=1e-07 Score=76.82 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=73.6
Q ss_pred CCceeEEEEecceecCCCCCCCceeeeEEEEEEec----CCCeeEEEEEEEEEecCCcCCeEEEEcCCCCCCcceeeEEe
Q 038284 71 FHFGNIAVFDDPITLDNNFHSKPVGRAQGMYIYDT----KNTYTSWLGFTFVLNSTDYQGTINFIGADPIMIKTRDISVV 146 (184)
Q Consensus 71 ~~FG~~~V~Dd~LT~gp~~~S~~VGRaQG~~~~~s----~~~~~~~~~~~~vF~~g~~~GTl~v~G~~~~~~~~rElaVV 146 (184)
..-|+.+.|+++|.++.. -+.||.-+|+-+... +.+..+--.+++.|-+ .|.|+++|..... ++..+||.
T Consensus 43 ~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd---~GhISvQGpy~t~-~Dt~LAIT 116 (188)
T 2brj_A 43 FGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD---YGHLSVQGPYLTY-EDSFLAIT 116 (188)
T ss_dssp SCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG---GEEEEEEEEEETT-BCEEEEEE
T ss_pred cCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCC---CceEEEecccccc-ccceeeEe
Confidence 347999999999997654 478999999977775 3344555567777743 4699999996432 35689999
Q ss_pred eccccccceeeEEEEEeEEecCcE
Q 038284 147 GGTGDFFMHRGVATLMTDAFEGDV 170 (184)
Q Consensus 147 GGTG~Fr~ArGya~~~t~~~~~~~ 170 (184)
||||.|+.|+|.++++...+....
T Consensus 117 GGTGif~gA~G~Vkl~~i~~P~k~ 140 (188)
T 2brj_A 117 GGAGIFEGAYGQVKLQQLVYPTKL 140 (188)
T ss_dssp EEEETTTTCEEEEEEEEEETTTEE
T ss_pred cCcceEcceEEEEEEEeeccCceE
Confidence 999999999999999999886543
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.55 E-value=1.2e-06 Score=70.85 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=73.4
Q ss_pred CCceeEEEEecceecCCCCCCCceeeeEEEEEEec----CCCeeEEEEEEEEEecCCcCCeEEEEcCCCCCCcceeeEEe
Q 038284 71 FHFGNIAVFDDPITLDNNFHSKPVGRAQGMYIYDT----KNTYTSWLGFTFVLNSTDYQGTINFIGADPIMIKTRDISVV 146 (184)
Q Consensus 71 ~~FG~~~V~Dd~LT~gp~~~S~~VGRaQG~~~~~s----~~~~~~~~~~~~vF~~g~~~GTl~v~G~~~~~~~~rElaVV 146 (184)
...|+++.|+++|.++.. -+-||-..|+-+... +.+...--.+++.|.+ -|+|+++|..-.. ...-+||+
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~GhIsvqGpy~t~-eDs~lAIT 124 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YGHISVQGPYITY-EDSYLAIT 124 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GCEEEEEEEEETT-BCEEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---CceEEEecceecc-CceeEEEe
Confidence 458999999999999987 567999999976663 2223333455677743 5799999997543 34569999
Q ss_pred eccccccceeeEEEEEeEEecCcEEE
Q 038284 147 GGTGDFFMHRGVATLMTDAFEGDVYF 172 (184)
Q Consensus 147 GGTG~Fr~ArGya~~~t~~~~~~~~~ 172 (184)
||||.|+.|+|-+++..+.+.-...+
T Consensus 125 GGTGiF~Ga~GqVkl~qiv~pfklfy 150 (195)
T 4h6b_A 125 GGSGIFAGCYGQAKLHQIIFPFKLFY 150 (195)
T ss_dssp EESGGGTTCEEEEEEEEEETTTEEEE
T ss_pred cCcceEcccEEEEEEeEeeeeeeEEE
Confidence 99999999999999998887665433
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=54.00 E-value=68 Score=24.18 Aligned_cols=86 Identities=17% Similarity=0.344 Sum_probs=51.2
Q ss_pred CCceeeeEEEEEEecC-CCeeEEEEEEEEE-ecCCcCCeEE--EEcCCCCCCcceeeEEee--ccccccceeeEEEEEeE
Q 038284 91 SKPVGRAQGMYIYDTK-NTYTSWLGFTFVL-NSTDYQGTIN--FIGADPIMIKTRDISVVG--GTGDFFMHRGVATLMTD 164 (184)
Q Consensus 91 S~~VGRaQG~~~~~s~-~~~~~~~~~~~vF-~~g~~~GTl~--v~G~~~~~~~~rElaVVG--GTG~Fr~ArGya~~~t~ 164 (184)
-.+.|++++-++.+-. ++...++++-.+= +-...+||+. -.|..........+-||= |||++...+|-..+...
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~~ 124 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVST 124 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEEC
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEEe
Confidence 3466888888777754 4444444443211 1123355544 445544434457789998 99999999999988533
Q ss_pred EecCcEEEEEEEE
Q 038284 165 AFEGDVYFRLRVD 177 (184)
Q Consensus 165 ~~~~~~~~~l~~~ 177 (184)
.+|.-.+++++.
T Consensus 125 -~~G~h~Y~~~y~ 136 (138)
T 2q03_A 125 -ENGQANYQITLQ 136 (138)
T ss_dssp -STTEEEEEEEEE
T ss_pred -cCCceEEEEEEe
Confidence 235544555543
No 4
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=50.98 E-value=78 Score=23.93 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=50.9
Q ss_pred CCceeeeEEEEEEecCC--CeeEEEEEEEEE-ecCCcCCe--EEEEcCCCCCCcceeeEEee--ccccccceeeEEEEEe
Q 038284 91 SKPVGRAQGMYIYDTKN--TYTSWLGFTFVL-NSTDYQGT--INFIGADPIMIKTRDISVVG--GTGDFFMHRGVATLMT 163 (184)
Q Consensus 91 S~~VGRaQG~~~~~s~~--~~~~~~~~~~vF-~~g~~~GT--l~v~G~~~~~~~~rElaVVG--GTG~Fr~ArGya~~~t 163 (184)
-.+.|+.++-++.+-.+ +...++++-.+= +-...+|| |+-.|..........+-||= |||++...+|-..+..
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~~ 120 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAISI 120 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 34667888888888663 333444443211 11233555 44455554444457799998 9999999999999864
Q ss_pred EEecCcEEEEEEEE
Q 038284 164 DAFEGDVYFRLRVD 177 (184)
Q Consensus 164 ~~~~~~~~~~l~~~ 177 (184)
. ++.-.+.|+++
T Consensus 121 ~--~G~h~y~ldy~ 132 (141)
T 2ooj_A 121 E--NGQHFYEFSFC 132 (141)
T ss_dssp E--TTEEEEEEEEE
T ss_pred c--CCeEEEEEEEE
Confidence 4 45443444443
No 5
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=14.19 E-value=91 Score=20.23 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=13.9
Q ss_pred ceecCCCCCCCceeee
Q 038284 82 PITLDNNFHSKPVGRA 97 (184)
Q Consensus 82 ~LT~gp~~~S~~VGRa 97 (184)
.|+.+|+.+|++||.+
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 5889999999999885
No 6
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=12.51 E-value=1.3e+02 Score=19.61 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=13.1
Q ss_pred ceecCCCCCCCceeee
Q 038284 82 PITLDNNFHSKPVGRA 97 (184)
Q Consensus 82 ~LT~gp~~~S~~VGRa 97 (184)
.|+.+|+.+|+++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 5788999999988763
No 7
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=12.36 E-value=2e+02 Score=24.37 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=34.4
Q ss_pred CCCeeEEEEEEEEEecCCcCC-eEEE-EcCCCCCCcceeeEEeeccccc---------cceeeEEEEEe
Q 038284 106 KNTYTSWLGFTFVLNSTDYQG-TINF-IGADPIMIKTRDISVVGGTGDF---------FMHRGVATLMT 163 (184)
Q Consensus 106 ~~~~~~~~~~~~vF~~g~~~G-Tl~v-~G~~~~~~~~rElaVVGGTG~F---------r~ArGya~~~t 163 (184)
.....|-..|--.|++|.++| --++ .|...+ ....-+-|=|||.| |.|.||-..+.
T Consensus 370 sspstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 370 SSPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp SSCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred CCCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEEe
Confidence 334467778888899999988 3332 233222 12233456678877 67888876653
No 8
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=12.27 E-value=64 Score=20.73 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=13.3
Q ss_pred ceecCCCCCCCceeee
Q 038284 82 PITLDNNFHSKPVGRA 97 (184)
Q Consensus 82 ~LT~gp~~~S~~VGRa 97 (184)
.|+.+|+.++++||++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5778999999999874
No 9
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=8.29 E-value=1.1e+02 Score=23.30 Aligned_cols=11 Identities=9% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCCceeeeehh
Q 038284 1 MGAKSCIIIFF 11 (184)
Q Consensus 1 m~~~~~~~~~~ 11 (184)
|++.+++++++
T Consensus 1 m~~~~~~l~~l 11 (147)
T 4ank_A 1 MASHRLLLLCL 11 (147)
T ss_dssp -----------
T ss_pred CchHHHHHHHH
Confidence 88877776666
No 10
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A
Probab=6.56 E-value=2.7e+02 Score=22.53 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=28.2
Q ss_pred EEEEEEEecCCcCC-eEEEEcCCCCC---CcceeeEEee-ccccc
Q 038284 113 LGFTFVLNSTDYQG-TINFIGADPIM---IKTRDISVVG-GTGDF 152 (184)
Q Consensus 113 ~~~~~vF~~g~~~G-Tl~v~G~~~~~---~~~rElaVVG-GTG~F 152 (184)
--+-+.|+++..+| ++.|+..|... ...=+|+|-| |.|.|
T Consensus 88 ~C~~LtFt~~~~~GKkmiVQ~TNtG~Dl~~n~FDl~iPGGGVG~f 132 (210)
T 2eng_A 88 ACYELTFTSGPVAGKKMVVQSTSTGGDLGSNHFDLNIPGGGVGIF 132 (210)
T ss_dssp CEEEEEECSGGGTTCEEEEEEEEC-----CCEEEEECTTSCCTTC
T ss_pred eeEEEEEcCCCcCCCEEEEEEecccCCCCCCceeEecCCCCcccc
Confidence 46778899999999 99999987542 2345677765 45665
Done!