Query 038285
Match_columns 178
No_of_seqs 233 out of 1195
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3.8E-25 1.3E-29 151.2 6.5 60 23-82 2-63 (63)
2 1u3e_M HNH homing endonuclease 92.7 0.0025 8.6E-08 49.8 -5.2 58 2-64 89-147 (174)
3 3igm_B PF14_0633 protein; AP2 83.1 0.77 2.6E-05 31.8 2.6 27 19-47 3-31 (77)
4 1z1b_A Integrase; protein-DNA 77.3 3.4 0.00012 33.6 5.2 41 25-69 14-55 (356)
5 3jtz_A Integrase; four strande 67.9 8.7 0.0003 26.5 4.8 37 33-69 37-75 (88)
6 3ju0_A Phage integrase; four s 49.6 21 0.00073 25.5 4.3 37 33-69 37-75 (108)
7 2ezd_A High mobility group pro 39.1 12 0.00042 20.5 1.2 18 5-22 2-19 (26)
8 2ftc_I Mitochondrial ribosomal 34.8 60 0.0021 23.6 4.8 36 33-70 79-114 (118)
9 1x60_A Sporulation-specific N- 31.8 41 0.0014 21.7 3.2 24 44-67 45-68 (79)
10 1uta_A FTSN, MSGA, cell divisi 28.5 54 0.0018 21.4 3.3 32 36-67 37-68 (81)
11 1kcq_A Gelsolin, brevin, ADF, 26.4 1E+02 0.0035 21.2 4.7 36 33-68 28-63 (104)
12 1svq_A Severin; actin-binding; 24.7 87 0.003 22.0 4.1 33 35-67 40-72 (114)
13 1r77_A Cell WALL targeting dom 22.8 75 0.0026 22.8 3.3 31 17-49 52-83 (103)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=3.8e-25 Score=151.19 Aligned_cols=60 Identities=50% Similarity=0.937 Sum_probs=56.1
Q ss_pred CeEEEEeeC-CeEEEEEeecC-CCcEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCcc
Q 038285 23 VYKGVRRRN-GKWVCELREPN-KKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEAA 82 (178)
Q Consensus 23 ~yrGVr~r~-~kW~A~I~~p~-~~k~i~LGtf~t~eeAA~AyD~Aa~~l~g~~a~lNFp~s~ 82 (178)
+||||+++. |||+|+|++|. ++++||||+|+|+||||+|||.|+++++|..+++|||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 599999888 69999999997 4799999999999999999999999999999999999863
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=92.75 E-value=0.0025 Score=49.83 Aligned_cols=58 Identities=9% Similarity=-0.109 Sum_probs=40.1
Q ss_pred CcchhhhhhccCCCCCCCCCCCeEEEEe-eCCeEEEEEeecCCCcEEEecCCCCHHHHHHHHHH
Q 038285 2 KSSTAQKRKAGRKKFQETRHPVYKGVRR-RNGKWVCELREPNKKSRIWLGTFASPDKAARAYDA 64 (178)
Q Consensus 2 r~~~~~k~~~gr~k~~~~~~s~yrGVr~-r~~kW~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~ 64 (178)
||++...+..++...... ..++||.. +.++|.+.|.. . +.++||.|.|.+|||++|..
T Consensus 89 ~~~t~~eN~~~~~~~~~~--~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 89 RWVTQKINVENQMSRGTL--NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp EEECHHHHHHHHHHHTCC--CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred EECCHHHHhhcccccCcc--cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 678888777665543212 22467643 22478898888 5 67789999999999999743
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=83.10 E-value=0.77 Score=31.81 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=20.8
Q ss_pred CCCCCeEEEEeeC--CeEEEEEeecCCCcEE
Q 038285 19 TRHPVYKGVRRRN--GKWVCELREPNKKSRI 47 (178)
Q Consensus 19 ~~~s~yrGVr~r~--~kW~A~I~~p~~~k~i 47 (178)
+.+|+|.||+..+ +.|+|.-.+ ++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 5789999997655 699999998 56554
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=77.29 E-value=3.4 Score=33.59 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=29.1
Q ss_pred EEEEeeC-CeEEEEEeecCCCcEEEecCCCCHHHHHHHHHHHHHHh
Q 038285 25 KGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALAL 69 (178)
Q Consensus 25 rGVr~r~-~kW~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~Aa~~l 69 (178)
.||+++. |.|..+... +|+++.+|. |..+|......+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 3576655 589877654 788899996 8888877766655444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=67.86 E-value=8.7 Score=26.55 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=28.8
Q ss_pred eEEEEEeecCCCcEEEecCCC--CHHHHHHHHHHHHHHh
Q 038285 33 KWVCELREPNKKSRIWLGTFA--SPDKAARAYDAAALAL 69 (178)
Q Consensus 33 kW~A~I~~p~~~k~i~LGtf~--t~eeAA~AyD~Aa~~l 69 (178)
.|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 37 ~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 37 HWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 799888885566789999998 5788877777766655
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=49.57 E-value=21 Score=25.53 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=28.0
Q ss_pred eEEEEEeecCCCcEEEecCCC--CHHHHHHHHHHHHHHh
Q 038285 33 KWVCELREPNKKSRIWLGTFA--SPDKAARAYDAAALAL 69 (178)
Q Consensus 33 kW~A~I~~p~~~k~i~LGtf~--t~eeAA~AyD~Aa~~l 69 (178)
.|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 37 ~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 37 YWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 798888885566789999998 4777777776666555
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=39.09 E-value=12 Score=20.45 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=13.5
Q ss_pred hhhhhhccCCCCCCCCCC
Q 038285 5 TAQKRKAGRKKFQETRHP 22 (178)
Q Consensus 5 ~~~k~~~gr~k~~~~~~s 22 (178)
+.+||++||-|..++...
T Consensus 2 ptpKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKGA 19 (26)
T ss_dssp CSCCCCSSCCTTCCCCSC
T ss_pred CCCcCCCCCcCcccccCc
Confidence 567999999987666543
No 8
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=34.83 E-value=60 Score=23.64 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=30.1
Q ss_pred eEEEEEeecCCCcEEEecCCCCHHHHHHHHHHHHHHhc
Q 038285 33 KWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALR 70 (178)
Q Consensus 33 kW~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~Aa~~l~ 70 (178)
.|+|.|.. +..-+-++...+++.|..|...|+.+|-
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 69999988 6666777776889999999999998764
No 9
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.77 E-value=41 Score=21.72 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=19.4
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHH
Q 038285 44 KSRIWLGTFASPDKAARAYDAAAL 67 (178)
Q Consensus 44 ~k~i~LGtf~t~eeAA~AyD~Aa~ 67 (178)
--|+++|.|.+.++|..+-+....
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 358999999999999888766544
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=28.46 E-value=54 Score=21.44 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=22.7
Q ss_pred EEEeecCCCcEEEecCCCCHHHHHHHHHHHHH
Q 038285 36 CELREPNKKSRIWLGTFASPDKAARAYDAAAL 67 (178)
Q Consensus 36 A~I~~p~~~k~i~LGtf~t~eeAA~AyD~Aa~ 67 (178)
+.|.....--|+.+|.|.+.++|..+-+....
T Consensus 37 a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 37 SKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred eEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 44443223468999999999999888766554
No 11
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=26.36 E-value=1e+02 Score=21.16 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=28.8
Q ss_pred eEEEEEeecCCCcEEEecCCCCHHHHHHHHHHHHHH
Q 038285 33 KWVCELREPNKKSRIWLGTFASPDKAARAYDAAALA 68 (178)
Q Consensus 33 kW~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~Aa~~ 68 (178)
.--+.|-...+.-++|.|...+..|...|-..|...
T Consensus 28 s~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 28 NGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp TTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345777776666789999999999999998888653
No 12
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=24.71 E-value=87 Score=22.04 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.1
Q ss_pred EEEEeecCCCcEEEecCCCCHHHHHHHHHHHHH
Q 038285 35 VCELREPNKKSRIWLGTFASPDKAARAYDAAAL 67 (178)
Q Consensus 35 ~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~Aa~ 67 (178)
-+.|-...+.-++|.|...+..|-+.|-..|..
T Consensus 40 D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~ 72 (114)
T 1svq_A 40 DCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARA 72 (114)
T ss_dssp SEEEEEETTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356777666779999999999999999888765
No 13
>1r77_A Cell WALL targeting domain of glycylglycine endopeptidase ALE-1; SH3B domain, lysostaphin, peptidoglycan hydrolase; 1.75A {Staphylococcus capitis}
Probab=22.77 E-value=75 Score=22.82 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCCCCCCeEEEEeeCC-eEEEEEeecCCCcEEEe
Q 038285 17 QETRHPVYKGVRRRNG-KWVCELREPNKKSRIWL 49 (178)
Q Consensus 17 ~~~~~s~yrGVr~r~~-kW~A~I~~p~~~k~i~L 49 (178)
.+..+-.|-.|....| -|...++. .|+|.||
T Consensus 52 ~~G~~V~YD~v~~~DGyvWIsy~~~--sG~r~Yi 83 (103)
T 1r77_A 52 RKGLTIKYDEVMKQDGHVWVGYNTN--SGKRVYL 83 (103)
T ss_dssp CTTCEEEEEEEEEETTEEEEEEECT--TCCEEEE
T ss_pred CCCCEEECCEEEecCCcEEEEEECC--CCeEEEE
Confidence 3445556778887788 99999999 8888776
Done!