BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038287
(91 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255561341|ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539072|gb|EEF40668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 458
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 78/91 (85%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD FTYNFLVKCLCKCR+L+ VY+F+D+MR+S ++PNLVTYTILIDNVCN+K
Sbjct: 180 LSLKHSKPDSFTYNFLVKCLCKCRALSNVYSFIDEMRSSFDLEPNLVTYTILIDNVCNSK 239
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREAMRL+ L + GFKPDCFVYNTIMKGY
Sbjct: 240 NLREAMRLLGILRECGFKPDCFVYNTIMKGY 270
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F YN ++K C + +M+ GI+P+L+TY LI + + EA R
Sbjct: 258 PDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEE-GIEPDLITYNTLIFGLSKGGRVSEAKR 316
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + +SG PD Y ++M G
Sbjct: 317 YLKIMVESGHFPDAVTYTSLMNG 339
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ L K ++ ++ M S G P+ VTYT L++ +C + A
Sbjct: 291 IEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVES-GHFPDAVTYTSLMNGLCRKGDALGA 349
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + G P+ YNT++ G
Sbjct: 350 LALLEDMEMKGCSPNSCTYNTLLYG 374
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 IFKQLP---PDIFTYNFLVKCLCKCR--SLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+ K LP P I TY+ L+ CK +L+ V+ ++ M + G P VT I + +
Sbjct: 106 MIKTLPSFTPTISTYHILLSQSCKAPDPTLSPVHQILNLM-VNNGFMPTQVTVDIAVRAL 164
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
C+ +A++LV LS KPD F YN ++K
Sbjct: 165 CSAGKEDDAVKLVKELSLKHSKPDSFTYNFLVK 197
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ LC+ ++ M G PN TY L+ +C + L + +
Sbjct: 328 PDAVTYTSLMNGLCRKGDALGALALLEDMEMK-GCSPNSCTYNTLLYGLCKERLLEKGIE 386
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + + G D Y T ++
Sbjct: 387 LYNVIKEGGMLLDTASYATFVRA 409
>gi|449434442|ref|XP_004135005.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 75/88 (85%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PPDI+TYN LVK LCK R+L+TVYNF+ +MR+S G KP+LVTYTILIDNVCN+ NLR
Sbjct: 189 KHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLR 248
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EAMRLVS L GFKPDCFVYNTIMKGY
Sbjct: 249 EAMRLVSLLYKEGFKPDCFVYNTIMKGY 276
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ T+N L+ L K + NF+D M A +G P+ VTYT L++ +C N A
Sbjct: 297 LEPDVVTFNTLIFGLSKSGRVKEARNFLDIM-AEMGHFPDAVTYTSLMNGMCREGNALGA 355
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + G P+ YNT++ G
Sbjct: 356 LSLLKEMEAKGCNPNSCTYNTLLHG 380
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
L++K+ PD F YN ++K C +M+ +G++P++VT+ LI + +
Sbjct: 256 LLYKEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMK-EVGLEPDVVTFNTLIFGLSKS 314
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA + +++ G PD Y ++M G
Sbjct: 315 GRVKEARNFLDIMAEMGHFPDAVTYTSLMNG 345
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL----------GIKPNLVTYTILIDNVC 57
PD T++ L L+T N D AS+ G P+ VT + + ++C
Sbjct: 121 PDQSTFHIL---------LSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTADLAVRSLC 171
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ + EA+ LV LS PD + YN ++K
Sbjct: 172 SVGLVDEAVELVKELSQKHTPPDIYTYNHLVK 203
>gi|449508786|ref|XP_004163411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 75/88 (85%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PPDI+TYN LVK LCK R+L+TVYNF+ +MR+S G KP+LVTYTILIDNVCN+ NLR
Sbjct: 189 KHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLR 248
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EAMRLVS L GFKPDCFVYNTIMKGY
Sbjct: 249 EAMRLVSLLYKEGFKPDCFVYNTIMKGY 276
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ T+N L+ L K + NF+D M A +G P+ VTYT L++ +C N A
Sbjct: 297 LEPDVVTFNTLIFGLSKSGRVKEARNFLDIM-AEMGHFPDAVTYTSLMNGMCREGNALGA 355
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + G P+ YNT++ G
Sbjct: 356 LSLLKEMEAKGCNPNSCTYNTLLHG 380
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
L++K+ PD F YN ++K C +M+ +G++P++VT+ LI + +
Sbjct: 256 LLYKEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMK-EVGLEPDVVTFNTLIFGLSKS 314
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA + +++ G PD Y ++M G
Sbjct: 315 GRVKEARNFLDIMAEMGHFPDAVTYTSLMNG 345
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL----------GIKPNLVTYTILIDNVC 57
PD T++ L L+T N D AS+ G P+ VT + + ++C
Sbjct: 121 PDQSTFHIL---------LSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTADLAVRSLC 171
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ + EA+ LV LS PD + YN ++K
Sbjct: 172 SVGLVDEAVELVKELSQKHTPPDIYTYNHLVK 203
>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
Length = 472
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 76/91 (83%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PPD FTYNF+++ LCK R+L+TVYNF+D+++ S +KP+LVTYTILIDNVCN K
Sbjct: 194 LSLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDLVTYTILIDNVCNGK 253
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREA RL+ L ++GFKPDC+VYNTIMKGY
Sbjct: 254 NLREATRLLEVLGEAGFKPDCYVYNTIMKGY 284
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ L K + F+D M A +G P+ VTYT L++ +C N A+
Sbjct: 307 PDLVTYNTLIFGLSKSGRVKEARKFLDIM-AEMGHFPDAVTYTSLMNGLCREGNALGALA 365
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ YNT++ G
Sbjct: 366 LLEEMEAKGCSPNSCTYNTLLHG 388
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + YN ++K C + +M+ G++P+LVTY LI + + ++EA +
Sbjct: 272 PDCYVYNTIMKGYCILDKGSEAIGVYKKMKEE-GVEPDLVTYNTLIFGLSKSGRVKEARK 330
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +++ G PD Y ++M G
Sbjct: 331 FLDIMAEMGHFPDAVTYTSLMNG 353
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKC--RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P+ TY+ L+ CK L+ V+ ++ M + G P+ VT I + ++C+ A
Sbjct: 129 PERSTYHILLSQSCKSPNSDLSAVHQTLNLM-VTHGFPPDRVTTDIAVRSLCSAGREEHA 187
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+ LV LS PD F YN I++
Sbjct: 188 IELVKELSLKHSPPDSFTYNFIIR 211
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ LC+ + +++M A G PN TY L+ +C + L +
Sbjct: 342 PDAVTYTSLMNGLCREGNALGALALLEEMEAK-GCSPNSCTYNTLLHGLCKLRMLERGIE 400
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G K + Y T ++
Sbjct: 401 LYGVMKSGGMKLEKASYATFVRA 423
>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 73/91 (80%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PDI++YNFLVK LCK R+L+ VY F+D+MR +KPNLVTYTILIDNVCNTK
Sbjct: 189 LSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTK 248
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREA RLV L + GFKPDCF+YNTIMKGY
Sbjct: 249 NLREATRLVDILEEEGFKPDCFLYNTIMKGY 279
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F YN ++K C + ++M+ G++P+L+TY LI + + + EA +
Sbjct: 267 PDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEK-GVEPDLITYNTLIFGLSKSGRVSEAKK 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +++ G PD Y ++M G
Sbjct: 326 LLRVMAEKGHFPDEVTYTSLMNG 348
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN L+ L K ++ + M A G P+ VTYT L++ +C
Sbjct: 298 KGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVM-AEKGHFPDEVTYTSLMNGMCRKGETL 356
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + G P+ YNT++ G
Sbjct: 357 AALALLEEMEMKGCSPNTCTYNTLLHG 383
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +C+ +++M G PN TY L+ +C ++ +AM
Sbjct: 337 PDEVTYTSLMNGMCRKGETLAALALLEEMEMK-GCSPNTCTYNTLLHGLCKSRMFDKAME 395
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L A+ G K D Y T ++
Sbjct: 396 LYGAMKSDGLKLDMASYATFVRA 418
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 8 PDIFTYNFLVKCLCKC-----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
PD TY+ L+ CK +L+ ++ ++ M S GI P+ T + + ++C +
Sbjct: 121 PDKSTYHILLTHCCKSTDSKYSTLSLIHQTLNLM-VSDGISPDKGTVDLAVRSLCTADRV 179
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMK 89
+A+ L+ LS PD + YN ++K
Sbjct: 180 DDAVELIKELSSKHCSPDIYSYNFLVK 206
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 74/91 (81%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PPD +TYNFL+K LCKC+ L VY FVD+MR +KP+LV++TILIDNVCN+K
Sbjct: 184 LTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSK 243
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREAM LVS L ++GFKPDCF+YNTIMKG+
Sbjct: 244 NLREAMYLVSKLGNAGFKPDCFLYNTIMKGF 274
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F YN ++K C + +M+ G++P+ +TY LI + + + EA
Sbjct: 262 PDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEE-GVEPDQITYNTLIYGLSKSGRVEEARM 320
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D+G++PD Y ++M G
Sbjct: 321 YLKTMVDAGYEPDTATYTSLMNG 343
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD TYN L+ L K + ++ M G +P+ TYT L++ +C
Sbjct: 293 EGVEPDQITYNTLIYGLSKSGRVEEARMYLKTM-VDAGYEPDTATYTSLMNGMCRKGESL 351
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + G P+ YNT++ G
Sbjct: 352 GALSLLEEMEARGCAPNDCTYNTLLHG 378
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +C+ + +++M A G PN TY L+ +C + + + M
Sbjct: 332 PDTATYTSLMNGMCRKGESLGALSLLEEMEAR-GCAPNDCTYNTLLHGLCKARLMDKGME 390
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + SG K + Y T+++
Sbjct: 391 LYELMKSSGVKLETNGYATLVR 412
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 IFKQLP---PDIFTYNFLVKCLCKC--RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I K P P T+ L+ C+ S++ V+ ++ M + G++P+ VT I + ++
Sbjct: 110 ILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLM-VNNGLEPDQVTTDIAVRSL 168
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
C T + EA L+ L++ PD + YN ++K
Sbjct: 169 CETGRVDEAKDLMKELTEKHSPPDTYTYNFLLK 201
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 74/91 (81%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PPD +TYNFL+K LCKC+ L VY FVD+MR +KP+LV++TILIDNVCN+K
Sbjct: 185 LTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSK 244
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREAM LVS L ++GFKPDCF+YNTIMKG+
Sbjct: 245 NLREAMYLVSKLGNAGFKPDCFLYNTIMKGF 275
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F YN ++K C + +M+ G++P+ +TY LI + + EA
Sbjct: 263 PDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEE-GVEPDQITYNTLIFGLSKAGRVEEARM 321
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D+G++PD Y ++M G
Sbjct: 322 YLKTMVDAGYEPDTATYTSLMNG 344
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ L K + ++ M G +P+ TYT L++ +C A+
Sbjct: 298 PDQITYNTLIFGLSKAGRVEEARMYLKTM-VDAGYEPDTATYTSLMNGMCRKGESLGALS 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ YNT++ G
Sbjct: 357 LLEEMEARGCAPNDCTYNTLLHG 379
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +C+ + +++M A G PN TY L+ +C + + + M
Sbjct: 333 PDTATYTSLMNGMCRKGESLGALSLLEEMEAR-GCAPNDCTYNTLLHGLCKARLMDKGME 391
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + SG K + Y T+++
Sbjct: 392 LYEMMKSSGVKLESNGYATLVR 413
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 IFKQLP---PDIFTYNFLVKCLCKC--RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I K P P T+ L+ C+ S++ V+ ++ M + G++P+ VT I + ++
Sbjct: 111 IMKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLM-VNNGLEPDQVTTDIAVRSL 169
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
C T + EA L+ L++ PD + YN ++K
Sbjct: 170 CETGRVDEAKDLMKELTEKHSPPDTYTYNFLLK 202
>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 463
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 74/91 (81%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PPD +TYNFL+K LCKC+ L VY FVD+MR +KP+LV++TILIDNVCN+K
Sbjct: 185 LTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSK 244
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREAM LVS L ++GFKPDCF+YNTIMKG+
Sbjct: 245 NLREAMYLVSKLGNAGFKPDCFLYNTIMKGF 275
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F YN ++K C + +M+ G++P+ +TY LI + + EA
Sbjct: 263 PDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEE-GVEPDQITYNTLIFGLSKAGRVEEARM 321
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D+G++PD Y ++M G
Sbjct: 322 YLKTMVDAGYEPDTATYTSLMNG 344
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ L K + ++ M G +P+ TYT L++ +C A+
Sbjct: 298 PDQITYNTLIFGLSKAGRVEEARMYLKTM-VDAGYEPDTATYTSLMNGMCRKGESLGALS 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ YNT++ G
Sbjct: 357 LLEEMEARGCAPNDCTYNTLLHG 379
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +C+ + +++M A G PN TY L+ +C + + + M
Sbjct: 333 PDTATYTSLMNGMCRKGESLGALSLLEEMEAR-GCAPNDCTYNTLLHGLCKARLMDKGME 391
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + SG K + Y T+++
Sbjct: 392 LYEMMKSSGVKLESNGYATLVR 413
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 IFKQLP---PDIFTYNFLVKCLCKC--RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I K P P T+ L+ C+ S++ V+ ++ M + G++P+ VT I + ++
Sbjct: 111 ILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLM-VNNGLEPDQVTTDIAVRSL 169
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
C T + EA L+ L++ PD + YN ++K
Sbjct: 170 CETGRVDEAKDLMKELTEKHSPPDTYTYNFLLK 202
>gi|42570815|ref|NP_973481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251569|gb|AEC06663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 349
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 74/91 (81%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PPD +TYNFL+K LCKC+ L VY FVD+MR +KP+LV++TILIDNVCN+K
Sbjct: 185 LTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSK 244
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREAM LVS L ++GFKPDCF+YNTIMKG+
Sbjct: 245 NLREAMYLVSKLGNAGFKPDCFLYNTIMKGF 275
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F YN ++K C + +M+ G++P+ +TY LI + + EA
Sbjct: 263 PDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEE-GVEPDQITYNTLIFGLSKAGRVEEARM 321
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D+G++PD Y ++M G
Sbjct: 322 YLKTMVDAGYEPDTATYTSLMNG 344
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 IFKQLP---PDIFTYNFLVKCLCKC--RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I K P P T+ L+ C+ S++ V+ ++ M + G++P+ VT I + ++
Sbjct: 111 ILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLM-VNNGLEPDQVTTDIAVRSL 169
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
C T + EA L+ L++ PD + YN ++K
Sbjct: 170 CETGRVDEAKDLMKELTEKHSPPDTYTYNFLLK 202
>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g17670-like [Glycine max]
Length = 456
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK--N 61
K PPD +T+NFLVK LCK ++TTVY F+D+MR +KP+LVTYTILIDNVCN K N
Sbjct: 179 KHCPPDTYTFNFLVKHLCKSSTITTVYAFIDEMREKFDVKPDLVTYTILIDNVCNGKNLN 238
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREAMRLVS L + GFK DCFVYNTIMKGY
Sbjct: 239 LREAMRLVSVLHEEGFKLDCFVYNTIMKGY 268
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F YN ++K C + ++M+ G++P+LVTY LI + + + EA +L
Sbjct: 257 DCFVYNTIMKGYCVLSRGSEAIEVYNKMKEE-GVEPDLVTYNTLIFGLSKSGRVTEARKL 315
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ +++ G+ PD Y ++M G
Sbjct: 316 LRVMAEKGYFPDEVTYTSLMNG 337
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ L K +T + M A G P+ VTYT L++ +C + A+
Sbjct: 291 PDLVTYNTLIFGLSKSGRVTEARKLLRVM-AEKGYFPDEVTYTSLMNGLCRKGDALGALA 349
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ YNT++ G
Sbjct: 350 LLGEMEAKGCSPNACTYNTLLHG 372
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ LC+ + +M A G PN TY L+ +C + + +A++
Sbjct: 326 PDEVTYTSLMNGLCRKGDALGALALLGEMEAK-GCSPNACTYNTLLHGLCKARLVEKAVK 384
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G K D Y T ++
Sbjct: 385 FYQVIRAGGLKLDTASYGTFVRA 407
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LCK R + F +RA G+K + +Y + +C + EA
Sbjct: 361 PNACTYNTLLHGLCKARLVEKAVKFYQVIRAG-GLKLDTASYGTFVRALCRDGRIAEAYE 419
Query: 68 LVSALSDSGFKPDCFVYNTI 87
+ +S D Y+T+
Sbjct: 420 VFDYAVESKSLTDVAAYSTL 439
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 2 IFKQLP---PDIFTYNFLVKCLCKCRSL-TTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
I K LP PD T++ L+ +L + ++ ++ M A+ GI P+ T + + ++C
Sbjct: 103 ITKTLPSFSPDRSTFHILLSHASNNSNLLSPIHQXLNLMLAA-GITPDTATADVAVRSLC 161
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ L A+ L+ + PD + +N ++K
Sbjct: 162 SAGRLDHAVELIKEFASKHCPPDTYTFNFLVK 193
>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 71/88 (80%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD FTYNFLVKCLCK R +VY+F+D+M++S IKP+LVTYTILIDNVCN KN+R
Sbjct: 187 KHSKPDTFTYNFLVKCLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIR 246
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RLV+ L + G KPD F+YNTIMKGY
Sbjct: 247 EADRLVAVLKECGLKPDAFLYNTIMKGY 274
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD F YN ++K C QM+ G++P+LVTY LI + + EA
Sbjct: 260 LKPDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEE-GVEPDLVTYNTLIFGLSKCGRVSEA 318
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + +SG PD Y ++M G
Sbjct: 319 KKLLKIMVESGHFPDAVTYTSLMNG 343
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I+KQ+ PD+ TYN L+ L KC ++ + M S G P+ VTYT L++ +
Sbjct: 286 IYKQMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMVES-GHFPDAVTYTSLMNGM 344
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C ++ A L+ + G P+ YNT++ G+
Sbjct: 345 CREGDVLGAAALLEEMELKGCSPNSCTYNTLLHGF 379
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKC--RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
L PD TY+ L+ C+ SL++ ++ M + G KPN T + I ++C+ +
Sbjct: 117 LSPDRSTYHVLLSQSCREPDSSLSSAQKVLNLM-INKGFKPNQFTVDVAIRSLCSAGRVD 175
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A+ LV S KPD F YN ++K
Sbjct: 176 DAILLVKEFSSKHSKPDTFTYNFLVK 201
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +C+ + +++M G PN TY L+ C + L + +
Sbjct: 332 PDAVTYTSLMNGMCREGDVLGAAALLEEMELK-GCSPNSCTYNTLLHGFCKGRRLNKGVE 390
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G K + Y T ++
Sbjct: 391 LYGVIKKGGMKLETASYATFVRA 413
>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 65/91 (71%), Gaps = 13/91 (14%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PDI++YNFLVK LCK R+L+ VY PNLVTYTILIDNVCNTK
Sbjct: 205 LSSKHCSPDIYSYNFLVKNLCKSRTLSLVY-------------PNLVTYTILIDNVCNTK 251
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREA RLV L + GFKPDCF+YNTIMKGY
Sbjct: 252 NLREATRLVDILEEEGFKPDCFLYNTIMKGY 282
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F YN ++K C + ++M+ G++P+L+TY LI + + + EA +
Sbjct: 270 PDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEK-GVEPDLITYNTLIFGLSKSGRVSEAKK 328
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +++ G PD Y ++M G
Sbjct: 329 LLRVMAEKGHFPDEVTYTSLMNG 351
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN L+ L K ++ + M A G P+ VTYT L++ +C
Sbjct: 301 KGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVM-AEKGHFPDEVTYTSLMNGMCRKGETL 359
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + G P+ YNT++ G
Sbjct: 360 AALALLEEMEMKGCSPNTCTYNTLLHG 386
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +C+ +++M G PN TY L+ +C ++ +AM
Sbjct: 340 PDEVTYTSLMNGMCRKGETLAALALLEEMEMK-GCSPNTCTYNTLLHGLCKSRMFDKAME 398
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L A+ G K D Y T ++
Sbjct: 399 LYGAMKSDGLKLDMASYATFVRA 421
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 8 PDIFTYNFLVKCLCKC-----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
PD TY+ L+ CK +L+ ++ ++ M S GI P+ T + + ++C +
Sbjct: 137 PDKSTYHILLTHCCKSTDSKYSTLSLIHQTLNLM-VSDGISPDKGTVDLAVRSLCTADRV 195
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMK 89
+A+ L+ LS PD + YN ++K
Sbjct: 196 DDAVELIKELSSKHCSPDIYSYNFLVK 222
>gi|359497557|ref|XP_003635566.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like, partial [Vitis vinifera]
Length = 253
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 57/65 (87%)
Query: 27 TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
+TVYNF+D+++ S +KP+LVTYTILIDNVCN KNLREA RL+ L ++GFKPDC+VYNT
Sbjct: 1 STVYNFIDELQNSFQLKPDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNT 60
Query: 87 IMKGY 91
IMKGY
Sbjct: 61 IMKGY 65
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ L K + F+D M A +G P+ VTYT L++ +C N
Sbjct: 84 EGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIM-AEMGHFPDAVTYTSLMNGLCREGNAL 142
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + G P+ YNT++ G
Sbjct: 143 GALALLEEMEAKGCSPNSCTYNTLLHG 169
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + YN ++K C + +M+ G++P+LVTY LI + + ++EA +
Sbjct: 53 PDCYVYNTIMKGYCILDKGSEAIGVYKKMKEE-GVEPDLVTYNTLIFGLSKSGRVKEARK 111
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +++ G PD Y ++M G
Sbjct: 112 FLDIMAEMGHFPDAVTYTSLMNG 134
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ LC+ + +++M A G PN TY L+ +C + L +
Sbjct: 123 PDAVTYTSLMNGLCREGNALGALALLEEMEAK-GCSPNSCTYNTLLHGLCKLRMLERGIE 181
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + G K + Y T ++
Sbjct: 182 LYGVMKSGGMKLEKASYATFVR 203
>gi|359497384|ref|XP_002267809.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Vitis vinifera]
Length = 458
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 23/113 (20%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PPD FTYNF+++ LCK R+L+TVYNF+D+++ S +KP+LVTYTILIDNVCN K
Sbjct: 262 LSLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDLVTYTILIDNVCNGK 321
Query: 61 NLREAMR-----------------------LVSALSDSGFKPDCFVYNTIMKG 90
EA R L+ + G P+ YNT++ G
Sbjct: 322 ESPEATRXXXXXXXXMNGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHG 374
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKC--RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P+ TY+ L+ CK L+ V+ ++ M + G P+ VT I + ++C+ A
Sbjct: 197 PERSTYHILLSQSCKSPNSDLSAVHQTLNLM-VTHGFPPDRVTTDIAVRSLCSAGREEHA 255
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+ LV LS PD F YN I++
Sbjct: 256 IELVKELSLKHSPPDSFTYNFIIR 279
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT+N L+ C + ++ +DQM+ G++P++V+Y +ID C K++R+A
Sbjct: 535 PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTE-GLQPDIVSYGTIIDGHCKAKDIRKAKE 593
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ L D G KP+ F+YN ++ GY
Sbjct: 594 YLTELMDRGLKPNVFIYNALIGGY 617
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L ++ T N L+ LC+ + + + M + GI+ + +TY I+I C +
Sbjct: 461 KGLGVNLATSNALIHGLCEGKYMKEATKVIQTM-LNKGIELDSITYNIMIRGCCKDSKME 519
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++L ++ GFKPD F +NT++ Y
Sbjct: 520 EAIKLHGDMTRRGFKPDLFTFNTLLHAY 547
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + D TYN +++ CK + M G KP+L T+ L+ CN
Sbjct: 493 MLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDM-TRRGFKPDLFTFNTLLHAYCNLG 551
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E L+ + G +PD Y TI+ G+
Sbjct: 552 KMEETFHLLDQMKTEGLQPDIVSYGTIIDGH 582
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++Y ++K LCK + + + ++ RA G++P +VTY +L+D +C + + EA RL
Sbjct: 222 YSYTAMIKALCKAGKVDAGFEMLAELWRA--GLQPTVVTYNVLMDALCKSGRVEEAFRLK 279
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G P + ++ G
Sbjct: 280 GRMEQGGMTPSVVTFGILING 300
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ Y +++ CK + + ++MR S GI PN +TYT L+ + N EA +L
Sbjct: 677 VIGYTIMIQGYCKLGKMVEAVAYFEEMR-SRGISPNKLTYTTLMYAYSKSGNSEEASKLF 735
Query: 70 SALSDSGFKPDCFVYNTIM 88
+ SG PD Y T++
Sbjct: 736 DEMVGSGVIPDNITYGTLI 754
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I T N ++ L + L D+MR S + N +YT +I +C +
Sbjct: 182 PPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGF 241
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+++ L +G +P YN +M
Sbjct: 242 EMLAELWRAGLQPTVVTYNVLM 263
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TYN L+ LCK + + +M G+ P++VT+ ILI+ + + E
Sbjct: 252 LQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQG-GMTPSVVTFGILINGLARGERFGEV 310
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++ + G P+ +YN ++
Sbjct: 311 GIVLQEMEQLGVSPNEVIYNELI 333
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI +Y ++ CK + + ++ ++ G+KPN+ Y LI ++ A
Sbjct: 568 LQPDIVSYGTIIDGHCKAKDIRKAKEYLTEL-MDRGLKPNVFIYNALIGGYGRNGDISGA 626
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ V + +G +P Y ++M
Sbjct: 627 IDAVETMKSNGIQPTNVTYGSLM 649
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+ L+ L + V V Q LG+ PN V Y LI C + +A
Sbjct: 287 MTPSVVTFGILINGLARGERFGEV-GIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQA 345
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+RL + KP YN I K
Sbjct: 346 LRLFDEMVLKKMKPTAVTYNLIAKA 370
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + L P++F YN L+ + ++ + V+ M+++ GI+P VTY L+ +C+
Sbjct: 598 LMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSN-GIQPTNVTYGSLMYWMCHAG 656
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + S ++ Y +++GY
Sbjct: 657 LVEEAKTIFSQARENNVDLGVIGYTIMIQGY 687
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ C+ + D+M +KP VTY ++ +C + A R
Sbjct: 324 PNEVIYNELIGWHCRKGHCSQALRLFDEMVLK-KMKPTAVTYNLIAKALCKEGEMERAER 382
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G C ++NT++
Sbjct: 383 ILEDMLSIGMTVHCGLFNTVV 403
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TY L+ +C + Q R + + ++ YTI+I C + EA
Sbjct: 638 IQPTNVTYGSLMYWMCHAGLVEEAKTIFSQAREN-NVDLGVIGYTIMIQGYCKLGKMVEA 696
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ Y T+M Y
Sbjct: 697 VAYFEEMRSRGISPNKLTYTTLMYAY 722
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT+N L+ C + ++ +DQM+ G++P++V+Y +ID C K++R+A
Sbjct: 307 PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTE-GLQPDIVSYGTIIDGHCKAKDIRKAKE 365
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ L D G KP+ F+YN ++ GY
Sbjct: 366 YLTELMDRGLKPNVFIYNALIGGY 389
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + D TYN +++ CK + M G KP+L T+ L+ CN
Sbjct: 265 MLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDM-TRRGFKPDLFTFNTLLHAYCNLG 323
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E L+ + G +PD Y TI+ G+
Sbjct: 324 KMEETFHLLDQMKTEGLQPDIVSYGTIIDGH 354
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++Y ++K LCK + + + ++ RA G++P +VTY +L+D +C + + EA RL
Sbjct: 12 YSYTAMIKALCKAGKVDAGFEMLAELWRA--GLQPTVVTYNVLMDALCKSGRVEEAFRLK 69
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G P + ++ G
Sbjct: 70 GRMEQGGMTPSVVTFGILING 90
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 33 VDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
V Q + GI+ + +TY I+I C + EA++L ++ GFKPD F +NT++ Y
Sbjct: 261 VIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAY 319
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ Y +++ CK + + ++MR S GI PN +TYT L+ + N EA +L
Sbjct: 449 VIGYTIMIQGYCKLGKMVEAVAYFEEMR-SRGISPNKLTYTTLMYAYSKSGNSEEASKLF 507
Query: 70 SALSDSGFKPDCFVYNTIM 88
+ SG PD Y T++
Sbjct: 508 DEMVGSGVIPDNITYGTLI 526
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TYN L+ LCK + + +M G+ P++VT+ ILI+ + + E
Sbjct: 42 LQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQG-GMTPSVVTFGILINGLARGERFGEV 100
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++ + G P+ +YN ++
Sbjct: 101 GIVLQEMEQLGVSPNEVIYNELI 123
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI +Y ++ CK + + ++ ++ G+KPN+ Y LI ++ A
Sbjct: 340 LQPDIVSYGTIIDGHCKAKDIRKAKEYLTEL-MDRGLKPNVFIYNALIGGYGRNGDISGA 398
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ V + +G +P Y ++M
Sbjct: 399 IDAVETMKSNGIQPTNVTYGSLM 421
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+ L+ L + V V Q LG+ PN V Y LI C + +A
Sbjct: 77 MTPSVVTFGILINGLARGERFGEV-GIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQA 135
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+RL + KP YN I K
Sbjct: 136 LRLFDEMVLKKMKPTAVTYNLIAKA 160
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + L P++F YN L+ + ++ + V+ M+++ GI+P VTY L+ +C+
Sbjct: 370 LMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSN-GIQPTNVTYGSLMYWMCHAG 428
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + S ++ Y +++GY
Sbjct: 429 LVEEAKTIFSQARENNVDLGVIGYTIMIQGY 459
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ C+ + D+M +KP VTY ++ +C + A R
Sbjct: 114 PNEVIYNELIGWHCRKGHCSQALRLFDEMVLK-KMKPTAVTYNLIAKALCKEGEMERAER 172
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G C ++NT++
Sbjct: 173 ILEDMLSIGMTVHCGLFNTVV 193
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TY L+ +C + Q R + + ++ YTI+I C + EA
Sbjct: 410 IQPTNVTYGSLMYWMCHAGLVEEAKTIFSQAREN-NVDLGVIGYTIMIQGYCKLGKMVEA 468
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ Y T+M Y
Sbjct: 469 VAYFEEMRSRGISPNKLTYTTLMYAY 494
>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
Length = 792
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L+ LCK + L N D+M+ + G+KP++VTY L+ C + EA++
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEA-GVKPSIVTYHSLLLGYCEKGRMDEALK 451
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S + D GF P+ Y T+MKGY
Sbjct: 452 LYSEMPDKGFPPNEVTYTTLMKGY 475
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++ K + + + QMR GI PN+VTYT ID C T A++
Sbjct: 533 PTTMTYNSIINGFVKAGMMGSAFGMYRQMRKK-GITPNIVTYTSFIDGYCRTNCCDLAVK 591
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G +PD YN +
Sbjct: 592 LLIYVRRDGIQPDIAAYNAFI 612
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TY + C+ + +R GI+P++ Y ID C N+
Sbjct: 564 KGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRD-GIQPDIAAYNAFIDTFCKQGNMS 622
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ + L G PD VYN+ + GY
Sbjct: 623 RALHFLVLLLKDGLTPDVTVYNSFVTGY 650
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD T+ L LC+ + +D MR L + PN+VTY +LI+
Sbjct: 701 MMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMR-RLDVSPNIVTYNMLINACVRDG 759
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
L+EA +L + SG PD Y+ +
Sbjct: 760 KLQEAFQLHDEMLSSGVVPDDTTYDIL 786
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP+ TY L+K K ++ Y +++MR + G+ TY ILI+ + +
Sbjct: 459 KGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQN-GVSCGDYTYNILINGLYMVNRVC 517
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E ++ GF P YN+I+ G+
Sbjct: 518 EVDEMLKRFLSEGFVPTTMTYNSIINGF 545
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y + LCK R + +MR + G +P +TY+ ++D + + + EA+R
Sbjct: 218 PDERVYAITISGLCKLRDADRALQVLGKMREA-GFEPWELTYSSVVDVLVKVRRMDEALR 276
Query: 68 LVSA-LSDSGFKPDCFVYNTIMKGY 91
L L +G K D + +M GY
Sbjct: 277 LKDQMLLATGKKMDVVLATMLMHGY 301
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TY+ +V L K R + DQM + G K ++V T+L+ C + +A+
Sbjct: 253 PWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALD 312
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P Y ++KG
Sbjct: 313 LFDEVVSDGVTPTNVTYGVLIKG 335
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y+ +++ + D+M A G+KP+ Y I I +C ++ A+++
Sbjct: 184 DAKMYDVVIRACVRGGMHCDAVRLFDEM-AGAGVKPDERVYAITISGLCKLRDADRALQV 242
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++GF+P Y++++
Sbjct: 243 LGKMREAGFEPWELTYSSVV 262
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P++ TY L+ C+CK +L+ DQMR G++PN TYT LID C
Sbjct: 338 MVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVR-GLRPNERTYTTLIDGFCQKG 396
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +++S + SGF P YN ++ GY
Sbjct: 397 LMNEAYKVLSEMIVSGFSPSVVTYNALVHGY 427
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN +++ + L F+ +M GI PN+VTY LID C K ++EAM
Sbjct: 205 PNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKE-GISPNVVTYNTLIDASCKKKKVKEAMA 263
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ A++ G + YN+++ G
Sbjct: 264 LLRAMAVGGVAANLISYNSVING 286
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + LPPD+ +Y+ ++ C+ R L + ++M G+ P+ VTY+ LI +C +
Sbjct: 443 MVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM-VEKGVLPDTVTYSSLIQGLCLQQ 501
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA L + G PD Y +++ Y
Sbjct: 502 KLVEAFDLFREMMRRGLPPDEVTYTSLINAY 532
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ K + PD TY+ L++ LC + L ++ F + MR G+ P+ VTYT LI+ C
Sbjct: 478 MVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRR--GLPPDEVTYTSLINAYCVD 535
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+RL + GF PD Y+ ++ G
Sbjct: 536 GELSKALRLHDEMVQRGFLPDNVTYSVLING 566
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TYN L+ CK + + + M A G+ NL++Y +I+ +C + E
Sbjct: 238 ISPNVVTYNTLIDASCKKKKVKEAMALLRAM-AVGGVAANLISYNSVINGLCGKGRMSEV 296
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
LV + G PD YNT++ G+
Sbjct: 297 GELVEEMRGKGLVPDEVTYNTLVNGF 322
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ +YN ++ LC ++ V V++MR G+ P+ VTY L++ C NL + + L
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEMRGK-GLVPDEVTYNTLVNGFCKEGNLHQGLVL 334
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+S + G P+ Y T++
Sbjct: 335 LSEMVGKGLSPNVVTYTTLI 354
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCN 58
+I P + TYN LV C L V V +R + G+ P++V+Y+ +I C
Sbjct: 408 MIVSGFSPSVVTYNALVHGYC---FLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR 464
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ L +A ++ + + G PD Y+++++G
Sbjct: 465 ERELGKAFQMKEEMVEKGVLPDTVTYSSLIQG 496
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + LPPD TY L+ C L+ D+M G P+ VTY++LI+ +
Sbjct: 513 MMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEM-VQRGFLPDNVTYSVLINGLNKKA 571
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A RL+ L PD YNT+++
Sbjct: 572 RTKVAKRLLLKLFYEESVPDDVTYNTLIE 600
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-----SLGIKPNLVTYTILIDNVCNTKNL 62
P + +YN ++ L + RS + ++ D R G+ PN+ TY ++I V + +L
Sbjct: 165 PTVLSYNAVLDALLR-RSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDL 223
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+ + + + G P+ YNT++
Sbjct: 224 EKGLGFMRKMEKEGISPNVVTYNTLI 249
>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
Length = 792
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L+ LCK + L N D+M+ + G+KP++VTY L+ C + EA++
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEA-GVKPSIVTYHSLLLGYCEKGRMDEALK 451
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S + D GF P+ Y T+MKGY
Sbjct: 452 LYSEMPDKGFPPNEVTYTTLMKGY 475
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++ K + + + QMR GI PN+VTYT ID C T A++
Sbjct: 533 PTTMTYNSIINGFVKAGMMGSAFGMYRQMRKK-GITPNIVTYTSFIDGYCRTNCCDLAVK 591
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G +PD YN + +
Sbjct: 592 LLIYVRRDGIQPDIAAYNAFIDTF 615
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TY + C+ + +R GI+P++ Y ID C N+
Sbjct: 564 KGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRD-GIQPDIAAYNAFIDTFCKQGNMS 622
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ + L G PD VYN+ + GY
Sbjct: 623 RALHFLVLLLKDGLTPDVTVYNSFVTGY 650
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L LC+ + +D MR L + PN+VTY +LI+ L+EA +
Sbjct: 708 PDDKTFTALTHGLCRSGDIDGAKRLLDDMR-RLDVSPNIVTYNMLINACVRDGKLQEAFQ 766
Query: 68 LVSALSDSGFKPDCFVYNTI 87
L + SG PD Y+ +
Sbjct: 767 LHDEMLSSGVVPDDTTYDIL 786
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP+ TY L+K K ++ Y +++MR + G+ TY ILI+ + +
Sbjct: 459 KGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQN-GVSCGDYTYNILINGLYMVNRVC 517
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E ++ GF P YN+I+ G+
Sbjct: 518 EVDEMLKRFLSEGFVPTTMTYNSIINGF 545
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y + LCK R + +MR + G +P +TY+ ++D + + EA+R
Sbjct: 218 PDERVYAITISGLCKLRDADRALQVLGKMREA-GFEPWELTYSSVVDVLVKVGRMDEALR 276
Query: 68 LV-SALSDSGFKPDCFVYNTIMKGY 91
L L +G K D + +M GY
Sbjct: 277 LKDQMLLATGKKMDVVLATMLMHGY 301
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 34 DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
D+M A G+KP+ Y I I +C ++ A++++ + ++GF+P Y++++
Sbjct: 209 DEM-AGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVV 262
Score = 34.7 bits (78), Expect = 7.7, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
TY+ +V L K + DQM + G K ++V T+L+ C + +A+ L
Sbjct: 256 LTYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFD 315
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G P Y ++KG
Sbjct: 316 EVVSDGVTPTNVTYGVLIKG 335
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ LCK R + YNF +M+A GI PN TYTILI+ CN + +
Sbjct: 581 KGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAK-GISPNKYTYTILINENCNLGHWQ 639
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+RL + D +PD + +++K
Sbjct: 640 EALRLYKDMLDREIQPDSCTHRSLLK 665
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ +YN L+ + ++ + ++R + P++VTY LID +C
Sbjct: 333 MVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYR-SLAPSVVTYNTLIDGLCRLG 391
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L AMRL + G PD F + T ++G+
Sbjct: 392 DLDVAMRLKDEMIKHGPDPDVFTFTTFVRGF 422
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L ++ L P + TYN L+ LC+ L D+M G P++ T+T + C
Sbjct: 368 LRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEM-IKHGPDPDVFTFTTFVRGFCKMG 426
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL A L + + G +PD F Y T + G
Sbjct: 427 NLPMAKELFDEMLNRGLQPDRFAYITRIVG 456
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ CK + + QM+A +G PN VTY +L++ + ++ + +A
Sbjct: 200 PTVVTYNTMLDSFCKKGMVQEALQLLFQMQA-MGCSPNDVTYNVLVNGLSHSGEMEQAKE 258
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G + + Y+ +++GY
Sbjct: 259 LIQDMLRLGLEVSVYTYDPLIRGY 282
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD F Y + K + + ++M A G P+L+TY + ID + NL+
Sbjct: 441 RGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLAR-GFPPDLITYNVFIDGLHKLGNLK 499
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA LV + +G PD Y +I+ +
Sbjct: 500 EASELVKKMLYNGLVPDHVTYTSIIHAH 527
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV L + + M LG++ ++ TY LI C + EA R
Sbjct: 235 PNDVTYNVLVNGLSHSGEMEQAKELIQDM-LRLGLEVSVYTYDPLIRGYCEKGQIEEASR 293
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P YNTIM G
Sbjct: 294 LGEEMLSRGAVPTVVTYNTIMYG 316
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L ++TY+ L++ C+ + ++M S G P +VTY ++ +C + +A
Sbjct: 268 LEVSVYTYDPLIRGYCEKGQIEEASRLGEEM-LSRGAVPTVVTYNTIMYGLCKWGRVSDA 326
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+ + + PD YNT++ GY
Sbjct: 327 RKLLDVMVNKNLMPDLVSYNTLIYGY 352
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------------ 36
++ + PPD+ TYN + L K +L V +M
Sbjct: 473 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGH 532
Query: 37 ----RA------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
RA S GI P++VTYT+LI + L+ A+ + + G P+ YN
Sbjct: 533 LRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 592
Query: 87 IMKG 90
++ G
Sbjct: 593 LING 596
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ N +++ L + V V + GI P +VTY ++D+ C
Sbjct: 157 MVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKG 216
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA++L+ + G P+ YN ++ G
Sbjct: 217 MVQEALQLLFQMQAMGCSPNDVTYNVLVNG 246
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TYN L+ LC+ L N V +M +K +L+TY ILID++CN
Sbjct: 367 MLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH-LKADLITYNILIDSLCNKG 425
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A+RL+ + G KP YNT++ GY
Sbjct: 426 EMKKALRLLDEMCRKGLKPSQLTYNTMIDGY 456
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN---FVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ + ++ TYN L+ CK + +Y + +MRA GI PN VT+ ILID C K
Sbjct: 192 RGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRAD-GICPNEVTFNILIDGFCKDK 250
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ AM++ + ++ G KP+ YN+++ G
Sbjct: 251 NVSAAMKVFAEMNRQGVKPNVVTYNSLING 280
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D+ TYN L+ LC + +D+M G+KP+ +TY +ID C NLR
Sbjct: 405 KHLKADLITYNILIDSLCNKGEMKKALRLLDEM-CRKGLKPSQLTYNTMIDGYCKEGNLR 463
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L S + G + YN ++KG+
Sbjct: 464 AALNLRSQMEKVGRLANVATYNVLIKGF 491
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ CK ++++ +M G+KPN+VTY LI+ +CN + EA
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQ-GVKPNVVTYNSLINGLCNNGKVNEATA 292
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + +S KP+ +N ++ G+
Sbjct: 293 LRDQMVNSCLKPNIITHNALLNGF 316
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I T+N L+ CK + + D M GI PN+ TY ILID C +N+ +A
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDM-PKQGITPNVTTYNILIDAYCKDENMEDA 360
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD YN ++ G
Sbjct: 361 FALYRIMLGKGVCPDVSTYNCLIAG 385
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++ TYN L+ LC + DQM S +KPN++T+ L++ C K ++
Sbjct: 265 QGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC-LKPNIITHNALLNGFCKNKMVK 323
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + G P+ YN ++ Y
Sbjct: 324 QAGELFDDMPKQGITPNVTTYNILIDAY 351
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P TYN ++ CK +L N QM +G N+ TY +LI C L
Sbjct: 440 KGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQME-KVGRLANVATYNVLIKGFCKKDKLE 498
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
+A L++ + + G P+ Y +
Sbjct: 499 DANGLLNEMLEKGLIPNRMTYEIV 522
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I+P L+++ I+I+ +C L +A ++ + G + YNT++ GY
Sbjct: 159 IEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGY 208
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ +CK R+L F DQMR G++PN TYT LID L EA R
Sbjct: 148 PSVVTYTALINSMCKARNLNRAMEFFDQMRIR-GLRPNERTYTTLIDGFSRQGLLNEAYR 206
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ +++SGF P YN + G+
Sbjct: 207 ILNEMTESGFSPSVVTYNAFIHGH 230
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK + + + M +S G++PNL++Y ++I+ +C +++EA
Sbjct: 43 PNVVTYNTLIDAYCKMGRIDEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWE 101
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + GF PD YNT++ GY
Sbjct: 102 ILEEMGYKGFTPDEVTYNTLLNGY 125
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ P+++TYN L++ C L +M + G PN+VTY LID C
Sbjct: 1 MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERN-GCLPNVVTYNTLIDAYCKMG 59
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L+ ++S G +P+ YN I+ G
Sbjct: 60 RIDEAFGLLKSMSSKGMQPNLISYNVIING 89
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ +Y+ ++ C+ L + +M G+ P+ VTY+ LI +C +
Sbjct: 246 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM-VEKGVSPDAVTYSSLIQGLCEMR 304
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA L + D G PD F Y T++ Y
Sbjct: 305 RLTEACDLSQEMLDMGLPPDEFTYTTLINAY 335
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ LC+ R LT + +M +G+ P+ TYT LI+ C
Sbjct: 281 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM-LDMGLPPDEFTYTTLINAYCVEG 339
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L +A+ L + GF PD Y+ ++ G
Sbjct: 340 DLNKALHLHDEMIHKGFLPDAVTYSVLING 369
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+K PD TYN L+ CK + +M + G+ P++VTYT LI+++C +NL
Sbjct: 108 YKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN-GVSPSVVTYTALINSMCKARNL 166
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM + G +P+ Y T++ G+
Sbjct: 167 NRAMEFFDQMRIRGLRPNERTYTTLIDGF 195
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD FTY L+ C L + D+M G P+ VTY++LI+ + REA
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEM-IHKGFLPDAVTYSVLINGLNKQARTREA 379
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
RL+ L P Y+T+++
Sbjct: 380 KRLLFKLIYEESVPSDVTYDTLIE 403
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN + C + V +M G+ P++V+Y+ +I C L A +
Sbjct: 218 PSVVTYNAFIHGHCVLERMEEALGVVQEM-VEKGLAPDVVSYSTIISGFCRKGELDRAFQ 276
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G PD Y+++++G
Sbjct: 277 MKQEMVEKGVSPDAVTYSSLIQG 299
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ PN+ TY ILI C+ L++ + + +G P+ YNT++ Y
Sbjct: 6 VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAY 55
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L++ CK R +D MRA G +PN VTY ++ID +C ++ +A
Sbjct: 196 PDVVTYNILLQAACKGRGYRQALELIDFMRAE-GCEPNNVTYNVIIDAMCREGDVDQARE 254
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+++L G KP+ YNT++KG+
Sbjct: 255 LLNSLPSRGCKPNTVNYNTVLKGF 278
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PP+ T N ++ LC+ L V ++++M + G N+VTY +I +C
Sbjct: 294 MVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKM-SKHGCTANVVTYNAVISGMCEQG 352
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A+ L+S + G KPD YNT++KG
Sbjct: 353 NVDSALELLSNMQSFGCKPDIVTYNTVLKG 382
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN ++ +C+ ++ + + M+ S G KP++VTY ++ +C+ +A L
Sbjct: 337 NVVTYNAVISGMCEQGNVDSALELLSNMQ-SFGCKPDIVTYNTVLKGLCSADRWEDAEEL 395
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ +S + PD +NTI+
Sbjct: 396 MIKMSQNDRLPDNSTFNTII 415
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+ +N L+ LC+ + +D M G P++VTY IL+ C + R+A+ L+
Sbjct: 164 YAHNPLIHALCERGRVADALVVLDGMLCR-GCAPDVVTYNILLQAACKGRGYRQALELID 222
Query: 71 ALSDSGFKPDCFVYNTIM 88
+ G +P+ YN I+
Sbjct: 223 FMRAEGCEPNNVTYNVII 240
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+P P+ TY+ ++ L K + +++M A+ G + + Y +L +++
Sbjct: 430 VFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEM-ANKGFNTDKM-YRVLTESL 487
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E +++V L DSG P +YNT++ G
Sbjct: 488 NKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLG 521
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++K LC + +M + + P+ T+ +I C + +A
Sbjct: 371 PDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRL-PDNSTFNTIISFWCQKGLILQAFE 429
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G P+ Y+TI+ G
Sbjct: 430 VFKQMPEKGCNPNSTTYSTIIGG 452
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+FT+N + C + + + +DQM+ S G+KP++VTY +ID C K
Sbjct: 518 MIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMK-SEGLKPDIVTYGTIIDGYCKAK 576
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +A ++ L +G +P+ +YN ++ GY
Sbjct: 577 DMHKANEYLTELMKNGLRPNAVIYNALIGGY 607
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TY ++K LC+ + + + ++R S GI+P +VTY +L+D +C + +
Sbjct: 205 KTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRS-GIQPTVVTYNVLMDALCKSGRVE 263
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA RL + + +P + ++ G
Sbjct: 264 EAFRLKGRMVEGRVRPSIVTFGILISG 290
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L ++ T N L+ LC+ ++ + M S G++ + +TY I+I C +
Sbjct: 451 KGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNS-GVELDRITYNIMIQGCCKASKMD 509
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++L + GFKPD F +N + Y
Sbjct: 510 EAIQLRDDMIKRGFKPDLFTFNIFLHTY 537
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K + + Y +++ CK + + +M S GI PN +TYT L+ + N
Sbjct: 659 IVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMH-SRGIPPNKMTYTTLMFAYSKSGN 717
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + G PD YNT++ G+
Sbjct: 718 KEEASKLFDEMVSLGIVPDSVSYNTLISGF 747
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I T + LV+ L L +MR + P++ TYT +I +C + A
Sbjct: 173 PSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFA 232
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ L SG +P YN +M
Sbjct: 233 MLAELRRSGIQPTVVTYNVLM 253
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP+ TY L+ K + D+M SLGI P+ V+Y LI C +L
Sbjct: 696 RGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEM-VSLGIVPDSVSYNTLISGFCEVDSLD 754
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + +S K D YN + G
Sbjct: 755 KMVESPAEMSSQVLKQDGCSYNAFVDG 781
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I T+ L+ L + + V + +M+ GI PN V Y +I C + EA++
Sbjct: 279 PSIVTFGILISGLARGQQFGEVGAVLQEMQG-FGITPNEVIYNEMIGWHCRKGHCSEALK 337
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G K YN I K
Sbjct: 338 LFDEMVSKGIKQTVVTYNLIAKA 360
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + TYN L+ LCK + + +M ++P++VT+ ILI + + E
Sbjct: 242 IQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGR-VRPSIVTFGILISGLARGQQFGEV 300
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++ + G P+ +YN ++
Sbjct: 301 GAVLQEMQGFGITPNEVIYNEMI 323
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ YN ++ C+ + D+M S GIK +VTY ++ +C + A
Sbjct: 312 ITPNEVIYNEMIGWHCRKGHCSEALKLFDEM-VSKGIKQTVVTYNLIAKALCKEGEMEHA 370
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+++ + +G C ++N+++
Sbjct: 371 EKILDEMLLAGMMVHCSLFNSVV 393
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDIFTYN L++ LC +++MR SL I P++VT+ +L+D +C +
Sbjct: 267 KGISPDIFTYNSLIQGLCNFSQWKEASALLNEMR-SLNIMPDIVTFNVLVDTICKEGKVS 325
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ +++ G +PD Y+++M GY
Sbjct: 326 EAQGVLKTMTEMGVEPDVVTYSSLMYGY 353
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FTY+ L+ CK + M+++ KPNLV Y ILID +C + NLR+A +
Sbjct: 446 PNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS-KPNLVMYNILIDAMCKSGNLRDARK 504
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L G +P+ +Y TI+ G
Sbjct: 505 LFSELFVKGLQPNAQIYTTIING 527
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY ++ LCK + +M + G +PN+VTY+ +ID+ + + EA+
Sbjct: 201 PDVYTYTTIINGLCKIGETAAAAGLLKKMEEA-GCQPNVVTYSTIIDSHRKDRRVNEALD 259
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S + G PD F YN++++G
Sbjct: 260 IFSYMKVKGISPDIFTYNSLIQG 282
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD+F+YN L+ CK + + ++M G+ PN V+Y LI +C
Sbjct: 369 MITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEM-IHQGLTPNNVSYNTLIHGLCQLG 427
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+LREA L + +G P+ F Y+ ++ G+
Sbjct: 428 SLREARNLFKNMHTNGNLPNLFTYSILLDGF 458
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N LV +CK ++ + M +G++P++VTY+ L+ + EA +
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTM-TEMGVEPDVVTYSSLMYGYSLRSEVVEARK 364
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L A+ G KPD F YN ++ GY
Sbjct: 365 LFDAMITKGCKPDVFSYNILINGY 388
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ +YN L+ LC+ SL N M + G PNL TY+IL+D C
Sbjct: 404 MIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTN-GNLPNLFTYSILLDGFCKQG 462
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A RL A+ + KP+ +YN ++
Sbjct: 463 YFGKAFRLFRAMQSTYSKPNLVMYNILI 490
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I+T + L+ C + + ++ + ++ LG++P +VT+T LI+ +C +A
Sbjct: 129 LSPNIYTLSILINCFSHLQRVDLAFSVLAKI-IKLGLQPTIVTFTTLINWLCKVGKFAQA 187
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M L + G +PD + Y TI+ G
Sbjct: 188 MELFDDMVARGCRPDVYTYTTIING 212
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ +CK +L ++ G++PN YT +I+ +C L EA+
Sbjct: 481 PNLVMYNILIDAMCKSGNLRDARKLFSELFVK-GLQPNAQIYTTIINGLCKEGLLDEALE 539
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD YN I++G+
Sbjct: 540 AFRNMEEDGCPPDEISYNVIIRGF 563
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P I T+ L+ LCK D M A G +P++ TYT +I+ +C A
Sbjct: 164 LQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR-GCRPDVYTYTTIINGLCKIGETAAA 222
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + ++G +P+ Y+TI+ +
Sbjct: 223 AGLLKKMEEAGCQPNVVTYSTIIDSH 248
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TY+ L+ + D M + G KP++ +Y ILI+ C K + EA
Sbjct: 339 VEPDVVTYSSLMYGYSLRSEVVEARKLFDAM-ITKGCKPDVFSYNILINGYCKVKRIDEA 397
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G P+ YNT++ G
Sbjct: 398 KQLFNEMIHQGLTPNNVSYNTLIHG 422
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ LCK R + YNF +M GI PN +YTILI+ CN N +
Sbjct: 613 KGILPNVITYNSLINGLCKVRRMDQAYNFFAEM-VEKGIFPNKYSYTILINENCNMGNWQ 671
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+ L + D G +PD ++ ++K
Sbjct: 672 EALSLYKQMLDRGVQPDSCTHSALLK 697
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD+ +YN L+ C+ +L + D++R S+ + P +VTY L+D +C
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR-SIYLFPTIVTYNTLLDGLCRQG 423
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A +L + + G PD Y ++ G
Sbjct: 424 ELEVAQQLKVEMINEGIAPDIVTYTILVNG 453
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------------ 36
+I + + PDI TY LV CK SL+ F D+M
Sbjct: 435 MINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGD 494
Query: 37 --RA--------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
RA + G P+L+ Y +++D +C NL EA L+ + G PD Y +
Sbjct: 495 TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554
Query: 87 IMKGY 91
I+ +
Sbjct: 555 IIHAH 559
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P I TYN L+ CK + + + +M+ G PN VTY +LI+ + +A
Sbjct: 230 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRR-GCAPNDVTYNVLINGLSKKGEFEQA 288
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G K + YN ++ GY
Sbjct: 289 KGLIGEMLKTGLKVSAYTYNPLIYGY 314
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P I TYN L+ LC+ L +M + GI P++VTYTIL++ C +L A
Sbjct: 405 LFPTIVTYNTLLDGLCRQGELEVAQQLKVEM-INEGIAPDIVTYTILVNGSCKMGSLSMA 463
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ G + D + Y T + G
Sbjct: 464 QEFFDEMLHEGLELDSYAYATRIVG 488
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +L PD+ N +++ L + + L + V + GIKP +VTY L+D+ C
Sbjct: 190 MIKSRLSPDVKNCNRILRIL-RDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGG 248
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + L+S + G P+ YN ++ G
Sbjct: 249 KVQQGLDLLSEMQRRGCAPNDVTYNVLING 278
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + TYN + LCK ++ + M A+ + P++V+Y LI C
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLAN-NLLPDVVSYNTLIYGYCRLG 388
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL +A L L P YNT++ G
Sbjct: 389 NLMKAFLLFDELRSIYLFPTIVTYNTLLDG 418
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA---------------------- 38
++ K PPD+ YN +V LCK +L + +M +
Sbjct: 505 MLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGR 564
Query: 39 ------------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
S G+ P++VTYT+LI L A S + + G P+ YN+
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624
Query: 87 IMKG 90
++ G
Sbjct: 625 LING 628
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TYN L+ L + ++M G P + TY I +C + +AM+ +S
Sbjct: 305 YTYNPLIYGYFNKGMLAEALSLQEEMVLK-GASPTVATYNSFIYGLCKLGRMSDAMQQLS 363
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ + PD YNT++ GY
Sbjct: 364 DMLANNLLPDVVSYNTLIYGY 384
Score = 34.3 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ L K + +M + G+K + TY LI N L EA+
Sbjct: 267 PNDVTYNVLINGLSKKGEFEQAKGLIGEMLKT-GLKVSAYTYNPLIYGYFNKGMLAEALS 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P YN+ + G
Sbjct: 326 LQEEMVLKGASPTVATYNSFIYG 348
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PP+IFTYN L+ LCK V + +M +L I PN+ T++ILID +C +
Sbjct: 232 KNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEM-VNLNINPNVHTFSILIDGLCKEGKVE 290
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ + + G +PD Y+ IM GY
Sbjct: 291 DADEVMRHMIEKGVEPDIITYSAIMDGY 318
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PDI TY+ ++ C + + +R GIKPN+ +Y+ILI+ C K
Sbjct: 299 MIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDK-GIKPNIFSYSILINGYCKKK 357
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL +AM+L +S G KPD Y+TI+ G
Sbjct: 358 NLAKAMQLFGEISQKGLKPDTVTYSTILHG 387
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+IF+Y+ L+ CK ++L ++ + G+KP+ VTY+ ++ + +
Sbjct: 337 KGIKPNIFSYSILINGYCKKKNLAKAMQLFGEI-SQKGLKPDTVTYSTILHGLIEVGRIG 395
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ + G PD +++T++ GY
Sbjct: 396 DAKKIFDEMLRVGPTPDICLHSTLLFGY 423
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
KP++ TY+I+ID +C NL A+ L++ + P+ F YN+++ G
Sbjct: 200 KPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDG 247
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++ LCK + + +++ S+G+ P++ TY ++I C E ++ +
Sbjct: 451 YTVVINGLCKNDRVREAHAIFEKL-PSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKM 509
Query: 73 SDSGFKPDCFVYNTIMKGY 91
D+G + YN IM+G+
Sbjct: 510 EDNGCPANNITYNVIMQGF 528
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 45 NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ YT++I+ +C +REA + L G PD YN ++ G+
Sbjct: 447 NISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGF 493
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF++LP PD+ TYN ++ C+ V + +M + G N +TY +++
Sbjct: 470 IFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDN-GCPANNITYNVIMQGF 528
Query: 57 CNTKNLREAMRLVSALSDSGFKPDC 81
+ + E + + ++ GF D
Sbjct: 529 FRSNKISEIVSFMKEMAGRGFSFDA 553
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ +CK R+L F DQMR G++PN TYT LID L EA R
Sbjct: 352 PSVVTYTALINSMCKARNLNRAMEFFDQMRIR-GLRPNERTYTTLIDGFSRQGLLNEAYR 410
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ +++SGF P YN + G+
Sbjct: 411 ILNEMTESGFSPSVVTYNAFIHGH 434
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK + + + M +S G++PNL++Y ++I+ +C +++EA
Sbjct: 247 PNVVTYNTLIDAYCKMGRIDEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWE 305
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + GF PD YNT++ GY
Sbjct: 306 ILEEMGYKGFTPDEVTYNTLLNGY 329
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ P+++TYN L++ C L +M + G PN+VTY LID C
Sbjct: 205 MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERN-GCLPNVVTYNTLIDAYCKMG 263
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L+ ++S G +P+ YN I+ G
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIING 293
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ +Y+ ++ C+ L + +M G+ P+ VTY+ LI +C +
Sbjct: 450 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM-VEKGVSPDAVTYSSLIQGLCEMR 508
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA L + D G PD F Y T++ Y
Sbjct: 509 RLTEACDLSQEMLDMGLPPDEFTYTTLINAY 539
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ LC+ R LT + +M +G+ P+ TYT LI+ C
Sbjct: 485 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM-LDMGLPPDEFTYTTLINAYCVEG 543
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L +A+ L + GF PD Y+ ++ G
Sbjct: 544 DLNKALHLHDEMIHKGFLPDAVTYSVLING 573
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+K PD TYN L+ CK + +M + G+ P++VTYT LI+++C +NL
Sbjct: 312 YKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN-GVSPSVVTYTALINSMCKARNL 370
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM + G +P+ Y T++ G+
Sbjct: 371 NRAMEFFDQMRIRGLRPNERTYTTLIDGF 399
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD FTY L+ C L + D+M G P+ VTY++LI+ + REA
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEM-IHKGFLPDAVTYSVLINGLNKQARTREA 583
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
RL+ L P Y+T+++
Sbjct: 584 KRLLFKLIYEESVPSDVTYDTLIE 607
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN + C + V +M G+ P++V+Y+ +I C L A +
Sbjct: 422 PSVVTYNAFIHGHCVLERMEEALGVVQEM-VEKGLAPDVVSYSTIISGFCRKGELDRAFQ 480
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G PD Y+++++G
Sbjct: 481 MKQEMVEKGVSPDAVTYSSLIQG 503
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 8 PDIFTYNFLVKCLCKCR-----SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
P + +YN ++ + + R S VY + + R S PN+ TY ILI C+ L
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVS----PNVYTYNILIRGFCSVGEL 230
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +G P+ YNT++ Y
Sbjct: 231 QKGLGCFGEMERNGCLPNVVTYNTLIDAY 259
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PDIFTYN L++ LC R +++M SL I PN+ T+ +L+D +C +
Sbjct: 264 KRISPDIFTYNSLIQGLCNFRRWKEASALLNEM-TSLNIMPNIFTFNVLVDAICKEGKVS 322
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + +++ G +PD Y+++M GY
Sbjct: 323 EAQGVFKTMTEMGVEPDVVTYSSLMYGY 350
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P ++TY ++ LCK T +M + G +PN+VTY ILID++C K + EA+
Sbjct: 198 PTVYTYTTIINGLCKIGETTAAAGLFKKMEEA-GCQPNVVTYNILIDSLCKDKLVNEALD 256
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S + PD F YN++++G
Sbjct: 257 IFSYMKAKRISPDIFTYNSLIQG 279
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD F+YN L+K CK + + ++M G+ P+ V Y LI +C
Sbjct: 366 MITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEM-IHQGLTPDNVNYNTLIHGLCQLG 424
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA L + +G PD F Y+ ++ G+
Sbjct: 425 RLREAQDLFKNMHSNGNLPDLFTYSMLLDGF 455
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI YN L+ +CK +L ++ G+ PN+ YT +I+N+C L EA
Sbjct: 476 LKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQ-GLLPNVQIYTTIINNLCKEGLLDEA 534
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD F YN I++G+
Sbjct: 535 LEAFRNMEGDGCPPDEFSYNVIIRGF 560
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD YN L+ LC+ L + M ++ G P+L TY++L+D C
Sbjct: 401 MIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSN-GNLPDLFTYSMLLDGFCKEG 459
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A RL + + KPD +YN ++
Sbjct: 460 YLGKAFRLFRVMQSTYLKPDIAMYNILI 487
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD T+N L+ LCK F D AS G +P + TYT +I+ +C A
Sbjct: 161 LQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS-GCQPTVYTYTTIINGLCKIGETTAA 219
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + ++G +P+ YN ++
Sbjct: 220 AGLFKKMEEAGCQPNVVTYNILI 242
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI+T + L+ C + + ++ +M LG++P+ VT+ LI+ +C +A
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKM-IKLGLQPDAVTFNTLINGLCKVGKFAQA 184
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ SG +P + Y TI+ G
Sbjct: 185 VEFFDDFEASGCQPTVYTYTTIING 209
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TY+ L+ + D M + G KP+ +Y ILI C K + EA
Sbjct: 336 VEPDVVTYSSLMYGYSLRMEIVEARKLFDAM-ITKGCKPDAFSYNILIKGYCKAKRIDEA 394
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G PD YNT++ G
Sbjct: 395 KQLFNEMIHQGLTPDNVNYNTLIHG 419
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ ++ P I + L+ + K + V + QM + G+ P++ T +ILID +
Sbjct: 85 MLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELA-GLSPDIYTLSILIDCFSHL 143
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + A + S + G +PD +NT++ G
Sbjct: 144 QRVDLAFSVFSKMIKLGLQPDAVTFNTLING 174
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ LCK R + Y F +M+A GI PN TYTILI+ CN + +
Sbjct: 569 KGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAK-GISPNKYTYTILINENCNLGHWQ 627
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+RL + D +PD ++ ++K
Sbjct: 628 EALRLYKDMLDREIQPDSCTHSALLK 653
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L F+ L P + TYN L+ LC+ L D+M G P++ T+TIL+ C
Sbjct: 356 LRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEM-IKHGPDPDVFTFTILVRGFCKLG 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL A L + + G +PD F Y T + G
Sbjct: 415 NLPMAKELFDEMLNRGLQPDRFAYITRIVG 444
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ +YN L+ + ++ + ++R G+ P++VTY LID +C
Sbjct: 321 MVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFR-GLVPSVVTYNTLIDGLCRMG 379
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L AMRL + G PD F + +++G+
Sbjct: 380 DLDVAMRLKDEMIKHGPDPDVFTFTILVRGF 410
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ CK + + QM+ +G PN VTY +L++ + ++ L +A
Sbjct: 188 PTVVTYNTMLDSFCKQGKVQEALQLLLQMQ-KMGCLPNDVTYNVLVNGLSHSGELEQAKE 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G + + Y+ +++GY
Sbjct: 247 LIQEMLRLGLEVSAYTYDPLIRGY 270
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 34/118 (28%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------------------- 36
PD+FT+ LV+ CK +L D+M
Sbjct: 398 PDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGM 457
Query: 37 ---RASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ G P+L+TY + ID + NL+EA LV + +G PD Y +I+ +
Sbjct: 458 QEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAH 515
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ N +++ L S V V + GI+P +VTY ++D+ C
Sbjct: 145 MVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQG 204
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA++L+ + G P+ YN ++ G
Sbjct: 205 KVQEALQLLLQMQKMGCLPNDVTYNVLVNG 234
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ LCK ++ +D M + + P+LV+Y LI N+ EA
Sbjct: 293 PTLVTYNTIMYGLCKWGRVSDARKLLDVM-VNKNLMPDLVSYNTLIYGYTRLGNIGEAFL 351
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + L G P YNT++ G
Sbjct: 352 LFAELRFRGLVPSVVTYNTLIDG 374
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LP D+ TYN LV L L + +M LG++ + TY LI C L EA
Sbjct: 222 LPNDV-TYNVLVNGLSHSGELEQAKELIQEM-LRLGLEVSAYTYDPLIRGYCEKGQLDEA 279
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + G P YNTIM G
Sbjct: 280 SRLGEEMLSRGAVPTLVTYNTIMYG 304
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY+ L++ C+ L ++M S G P LVTY ++ +C + +A +L+
Sbjct: 261 YTYDPLIRGYCEKGQLDEASRLGEEM-LSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLD 319
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ + PD YNT++ GY
Sbjct: 320 VMVNKNLMPDLVSYNTLIYGY 340
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------------ 36
++ + PPD+ TYN + L K +L V +M
Sbjct: 461 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGH 520
Query: 37 ----RA------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
RA S GI P++VTYT+LI + L+ A+ + + G P+ YN
Sbjct: 521 LRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 580
Query: 87 IMKG 90
++ G
Sbjct: 581 LING 584
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L++ CK R +D MRA G PN VTY +L+D +C ++ +A+
Sbjct: 40 PDVVTYNILLEATCKGRGYRQAMELIDLMRAE-GCTPNNVTYNVLMDGMCGEGDVDDALE 98
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ L G KP YNT++KG
Sbjct: 99 LLRNLPSHGCKPSTVNYNTVLKG 121
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PP+ T+N ++ LC+ L +++M + G N+VTY +I+ +C +
Sbjct: 138 MLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKM-SKHGCTANIVTYNAIINGLCEQR 196
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ AM L+S + G KPD YNT++KG
Sbjct: 197 NVDGAMGLLSKMKSYGCKPDIVTYNTLLKG 226
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TYN L+ LC+ + + +D M G P++VTY IL++ C + R+AM
Sbjct: 5 PNAYTYNPLIHTLCERGQVRDALSVLDDMLCR-GCAPDVVTYNILLEATCKGRGYRQAME 63
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ YN +M G
Sbjct: 64 LIDLMRAEGCTPNNVTYNVLMDG 86
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I TYN ++ LC+ R++ + +M+ S G KP++VTY L+ +C+ +A L
Sbjct: 181 NIVTYNAIINGLCEQRNVDGAMGLLSKMK-SYGCKPDIVTYNTLLKGLCSAARWVDAEEL 239
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ ++ +G PD +NT++
Sbjct: 240 MDNMTQNGCLPDNVTFNTLI 259
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+K LC +D M + G P+ VT+ LI +C + +A+
Sbjct: 215 PDIVTYNTLLKGLCSAARWVDAEELMDNMTQN-GCLPDNVTFNTLIGFLCQKGLMVDAIE 273
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D G P+ Y+TI+ G
Sbjct: 274 VFKQMPDKGCTPNSITYSTIISG 296
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+P P+ TY+ ++ L K L ++M G P+ + Y +L + +
Sbjct: 274 VFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM-GHKGFNPDKI-YQLLAECL 331
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + EA++ V L DSG P +YN I+ G
Sbjct: 332 NDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLG 365
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ LC+ + QM G PN +TY+ +I + L +A+
Sbjct: 250 PDNVTFNTLIGFLCQKGLMVDAIEVFKQM-PDKGCTPNSITYSTIISGLAKATKLDQALE 308
Query: 68 LVSALSDSGFKPD 80
L + + GF PD
Sbjct: 309 LFNEMGHKGFNPD 321
>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
Length = 770
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+FT+N ++ C + + + +DQM+ S G+KP++VTY +ID C K
Sbjct: 523 MIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMK-SEGLKPDIVTYGTIIDGYCKAK 581
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +A + + L +G +P+ +YN ++ GY
Sbjct: 582 DVHKANKYLIELIKNGLRPNAVIYNALIGGY 612
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY ++K LC+ + + + ++ S GI+P +VTY +L+D +C + + EA +
Sbjct: 214 PDVYTYTVMIKALCRAGEIDAAFVMLAELERS-GIQPTVVTYNVLMDALCRSGRVEEAFQ 272
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + +P + ++ G
Sbjct: 273 LKGRMVEGRLRPSIVTFGILING 295
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +I T N L+ LC+ ++ + M S G++ + +TY I+I C +
Sbjct: 456 KGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDS-GVEFDRITYNIMIQFCCKASKME 514
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++L + GFKPD F +NT ++ Y
Sbjct: 515 EAIQLRDDMIKRGFKPDLFTFNTFLRAY 542
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K + + Y +++ CK + + +M I+PN +TYT L+ C N
Sbjct: 664 ILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYR-DIRPNKMTYTTLMYAYCKCGN 722
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + SG PD YNT++ G
Sbjct: 723 KEEAFKLFDEMVSSGIVPDTVSYNTLISG 751
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I T N LV+ L L +MR + P++ TYT++I +C + A
Sbjct: 178 PSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFV 237
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ L SG +P YN +M
Sbjct: 238 MLAELERSGIQPTVVTYNVLM 258
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P I T+ L+ L + + V + +M GI PN V Y LI C + E
Sbjct: 281 RLRPSIVTFGILINGLARGQRFGEVDAVLQEMEG-FGITPNEVIYNQLIGWHCREGHCSE 339
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL + G K YN I K
Sbjct: 340 ALRLFDEMVSKGIKQTVVTYNLIAKA 365
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + TYN L+ LC+ + + +M ++P++VT+ ILI+ + + E
Sbjct: 247 IQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGR-LRPSIVTFGILINGLARGQRFGEV 305
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++ + G P+ +YN ++
Sbjct: 306 DAVLQEMEGFGITPNEVIYNQLI 328
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ YN L+ C+ + D+M S GIK +VTY ++ +C + A
Sbjct: 317 ITPNEVIYNQLIGWHCREGHCSEALRLFDEM-VSKGIKQTVVTYNLIAKALCKEGEMEHA 375
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+++ + +G C ++N+++
Sbjct: 376 EQILDEMLLAGMTVHCSLFNSVV 398
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ LCK R + YNF +M GI PN +YTILI+ CN N +
Sbjct: 613 KGILPNVITYNSLINGLCKVRRMDQAYNFFAEM-VEKGIFPNKYSYTILINENCNMGNWQ 671
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+ L + D G +PD ++ ++K
Sbjct: 672 EALSLYKQMLDRGVQPDSCTHSALLK 697
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------------ 36
+I + + PDI TY LV CK SL+ F D+M
Sbjct: 435 MINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGD 494
Query: 37 --RA--------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
RA + G P+L+ Y +++D +C NL EA L+ + G PD Y +
Sbjct: 495 TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554
Query: 87 IMKGY 91
I+ +
Sbjct: 555 IIHAH 559
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD+ +YN L+ C+ +L + D++R S+ + P +VTY L+D +C
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR-SIYLFPTIVTYNTLLDGLCRQG 423
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A +L + + G PD Y ++ G
Sbjct: 424 ELEVAQQLKVEMINEGIAPDIVTYTILVNG 453
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P I TYN L+ CK + + + +M+ G PN VTY +LI+ + +A
Sbjct: 230 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRR-GCAPNDVTYNVLINGLSKKGEFEQA 288
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G K + YN ++ GY
Sbjct: 289 KGLIGEMLKTGLKVSAYTYNPLIYGY 314
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LC+ L +M + GI P++VTYTIL++ C +L A
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQQLKVEM-INEGIAPDIVTYTILVNGSCKMGSLSMAQE 465
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G + D + Y T + G
Sbjct: 466 FFDEMLHEGLELDSYAYATRIVG 488
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA---------------------- 38
++ K PPD+ YN +V LCK +L + +M +
Sbjct: 505 MLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGR 564
Query: 39 ------------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
S G+ P++VTYT+LI L A S + + G P+ YN+
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624
Query: 87 IMKG 90
++ G
Sbjct: 625 LING 628
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +L PD+ N +++ L + + L + V + GIKP +VTY L+D+ C
Sbjct: 190 MIKSRLSPDVKNCNRILRIL-RDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGG 248
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + L+S + G P+ YN ++ G
Sbjct: 249 KVQQGLDLLSEMQRRGCAPNDVTYNVLING 278
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + TYN + LCK ++ + M A+ + P++V+Y LI C
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLAN-NLLPDVVSYNTLIYGYCRLG 388
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL +A L L P YNT++ G
Sbjct: 389 NLMKAFLLFDELRSIYLFPTIVTYNTLLDG 418
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TYN L+ L + ++M G P + TY I +C + +AM+ +S
Sbjct: 305 YTYNPLIYGYFNKGMLAEALSLQEEMVLK-GASPTVATYNSFIYGLCKLGRMSDAMQQLS 363
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ + PD YNT++ GY
Sbjct: 364 DMLANNLLPDVVSYNTLIYGY 384
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ L K + +M + G+K + TY LI N L EA+
Sbjct: 267 PNDVTYNVLINGLSKKGEFEQAKGLIGEMLKT-GLKVSAYTYNPLIYGYFNKGMLAEALS 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P YN+ + G
Sbjct: 326 LQEEMVLKGASPTVATYNSFIYG 348
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY+ L++ LCK R L V + +M SLG+ P+ VTYT LI+ C
Sbjct: 474 MVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM-LSLGLPPDEVTYTSLINAYCIEG 532
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +A+RL + GF PD YN ++ G+
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L+ +CK +L F+DQMR G+ PN TYT LID L++A
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR-GLHPNGRTYTTLIDGFSQQGFLKQA 397
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + ++GF P YN ++ G+
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGH 423
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ CK R + + + M A G+ PNL++Y ++I+ +C ++E
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLM-ALKGLNPNLISYNVVINGLCREGQMKETSE 294
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +S + PD +NT++ GY
Sbjct: 295 ILEEMSKRRYVPDRVTFNTLINGY 318
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ P+++TYN L++ C +L F +M + G PN+VTY +ID
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERN-GCLPNVVTYNTIIDAY 248
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + + EA +L+ ++ G P+ YN ++ G
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPNLISYNVVING 282
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ C + +M + G+ PN+VTYT LI+++C NL AM
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKN-GLSPNVVTYTTLINSMCKAGNLNRAME 364
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G P+ Y T++ G+
Sbjct: 365 FLDQMRDRGLHPNGRTYTTLIDGF 388
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +YN ++ + + + + + + G+ PN+ TY ILI C NL +
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLX 224
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +G P+ YNTI+ Y
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAY 248
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ C + + +M G P++V+Y+ +I C + L +A +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEM-IERGFIPDVVSYSTIISGFCRNQELEKAFQ 469
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G PD Y+++++G
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQG 492
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD TY L+ C L D+M G P++VTY +LI+ +EA
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQK-GFSPDIVTYNVLINGFNKQSRTKEA 572
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
RL+ L P+ YNT++
Sbjct: 573 KRLLLKLLYEESVPNEITYNTLI 595
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PDI TYN L+ K + ++ + PN +TY LIDN CN
Sbjct: 544 MIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV-PNEITYNTLIDN-CNNL 601
Query: 61 NLR----------------EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA R++ ++ G+K + VYN I+ G+
Sbjct: 602 EFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGH 648
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY+ L++ LCK R L V + +M SLG+ P+ VTYT LI+ C
Sbjct: 474 MVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM-LSLGLPPDEVTYTSLINAYCIEG 532
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +A+RL + GF PD YN ++ G+
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L+ +CK +L F+DQMR G+ PN TYT LID L++A
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR-GLHPNGRTYTTLIDGFSQQGFLKQA 397
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + ++GF P YN ++ G+
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGH 423
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ CK R + + + M A G+ PNL++Y ++I+ +C ++E
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLM-ALKGLNPNLISYNVVINGLCREGQMKETSE 294
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +S + PD +NT++ GY
Sbjct: 295 ILEEMSKRRYVPDRVTFNTLINGY 318
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ P+++TYN L++ C +L F +M + G PN+VTY +ID
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERN-GCLPNVVTYNTIIDAY 248
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + + EA +L+ ++ G P+ YN ++ G
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPNLISYNVVING 282
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ C + +M + G+ PN+VTYT LI+++C NL AM
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKN-GLSPNVVTYTTLINSMCKAGNLNRAME 364
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G P+ Y T++ G+
Sbjct: 365 FLDQMRDRGLHPNGRTYTTLIDGF 388
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +YN ++ + + + + + + G+ PN+ TY ILI C NL +
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLF 224
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +G P+ YNTI+ Y
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAY 248
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ C + + +M G P++V+Y+ +I C + L +A +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEM-IERGFIPDVVSYSTIISGFCRNQELEKAFQ 469
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G PD Y+++++G
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQG 492
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD TY L+ C L D+M G P++VTY +LI+ +EA
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEM-IQKGFSPDIVTYNVLINGFNKQSRTKEA 572
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
RL+ L P+ YNT++
Sbjct: 573 KRLLLKLLYEESVPNEITYNTLI 595
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PDI TYN L+ K + ++ + PN +TY LIDN CN
Sbjct: 544 MIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV-PNEITYNTLIDN-CNNL 601
Query: 61 NLR----------------EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA R++ ++ G+K + VYN I+ G+
Sbjct: 602 EFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGH 648
>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
Length = 225
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ Y L+ LCK + +D M G++PN+VTY +LI+ +C +++
Sbjct: 93 KGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMM-VRRGLEPNVVTYNVLINCMCKEGSVK 151
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++ +S+ G PD YNT++KG
Sbjct: 152 EAIGVLKKMSEKGVAPDVVTYNTLIKG 178
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 17 VKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76
++ LC R + MR S G++ ++VTY LI +C+ + +A+ L+ + +SG
Sbjct: 1 MRALCADRLADQAVGLLRSMR-SAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 59
Query: 77 FKPDCFVYNTIMKGY 91
+P+ VY+++++GY
Sbjct: 60 IEPNVVVYSSLLQGY 74
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TYN L+ C+CK S+ + +M + G+ P++VTY LI + +
Sbjct: 125 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM-SEKGVAPDVVTYNTLIKGLSDVL 183
Query: 61 NLREAMRLVSAL 72
+ EAM L+ +
Sbjct: 184 EMDEAMWLLEEM 195
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D+ TY L++ LC + + +M S GI+PN+V Y+ L+ C + + +
Sbjct: 27 ADVVTYGTLIRGLCDAAEVDKAVELMGEMCES-GIEPNVVVYSSLLQGYCKSGRWEDVGK 85
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +S+ G +PD +Y ++
Sbjct: 86 VFVEMSEKGIEPDVVMYTGLI 106
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L++ CK R +D MRA G PN VTY +L+D +C ++ +A+
Sbjct: 200 PDVVTYNILLEATCKGRGYRQAMELIDLMRAE-GCTPNNVTYNVLMDGMCGEGDVDDALE 258
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ L G KP YNT++KG
Sbjct: 259 LLRNLPSHGCKPSTVNYNTVLKG 281
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PP+ T+N ++ LC+ L +++M + G N+VTY +I+ +C +
Sbjct: 298 MLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKM-SKHGCTANIVTYNAIINGLCEQR 356
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ AM L+S + G KPD YNT++KG
Sbjct: 357 NVDGAMGLLSKMKSYGCKPDIVTYNTLLKG 386
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TYN L+ LC+ + + +D M G P++VTY IL++ C + R+AM
Sbjct: 165 PNAYTYNPLIHTLCERGQVRDALSVLDDMLCR-GCAPDVVTYNILLEATCKGRGYRQAME 223
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ YN +M G
Sbjct: 224 LIDLMRAEGCTPNNVTYNVLMDG 246
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I TYN ++ LC+ R++ + +M+ S G KP++VTY L+ +C+ +A L
Sbjct: 341 NIVTYNAIINGLCEQRNVDGAMGLLSKMK-SYGCKPDIVTYNTLLKGLCSAAQWVDAEEL 399
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ ++ +G PD +NT++
Sbjct: 400 MDNMTQNGCLPDNVTFNTLI 419
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+K LC +D M + G P+ VT+ LI +C + +A+
Sbjct: 375 PDIVTYNTLLKGLCSAAQWVDAEELMDNMTQN-GCLPDNVTFNTLIGFLCQKGLMVDAIE 433
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D G P+ Y+TI+ G
Sbjct: 434 VFKQMPDKGCTPNSITYSTIISG 456
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+P P+ TY+ ++ L K L ++M G P+ + Y +L + +
Sbjct: 434 VFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM-GHKGFNPDKI-YQLLAECL 491
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + EA++ V L DSG P +YN I+ G
Sbjct: 492 NDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLG 525
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ LC+ + QM G PN +TY+ +I + L +A+
Sbjct: 410 PDNVTFNTLIGFLCQKGLMVDAIEVFKQM-PDKGCTPNSITYSTIISGLAKATKLDQALE 468
Query: 68 LVSALSDSGFKPD 80
L + + GF PD
Sbjct: 469 LFNEMGHKGFNPD 481
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 28/112 (25%)
Query: 7 PPDIFTYNFLVKCLCK-------------CRSLTTVYNF---------------VDQMRA 38
PPD N LV+ LC+ C TV + ++
Sbjct: 100 PPDAALANRLVRDLCRRGRPDDAERVVGACGPAATVVAYGALTDGYCRAGRLGDARRVVG 159
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++PN TY LI +C +R+A+ ++ + G PD YN +++
Sbjct: 160 GMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEA 211
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P++ TY LV LCKC + + +M + G++PN+ TY LI+ +C
Sbjct: 453 MVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM-SEKGLQPNVCTYNALINGLCKVG 511
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ +A++L+ + +GF PD Y TIM Y
Sbjct: 512 NIEQAVKLMEEMDLAGFFPDTITYTTIMDAY 542
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD TY L+ CK + ++ +QM G+ PN+VTYT L+D +C
Sbjct: 418 MLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQM-VEKGLTPNVVTYTALVDGLCKCG 476
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L+ +S+ G +P+ YN ++ G
Sbjct: 477 EVDIANELLHEMSEKGLQPNVCTYNALING 506
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD TY ++ LC+ + +M S G+KP+ VTYT LID C ++
Sbjct: 386 KKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEM-LSKGLKPDEVTYTALIDGYCKAGEMK 444
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + + + G P+ Y ++ G
Sbjct: 445 EAFSLHNQMVEKGLTPNVVTYTALVDG 471
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ TYN L+ LCK ++ +++M + G P+ +TYT ++D C +
Sbjct: 491 KGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLA-GFFPDTITYTTIMDAYCKMGEMA 549
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ + D G +P +N +M G+
Sbjct: 550 KAHELLRIMLDKGLQPTIVTFNVLMNGF 577
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD Y L+ K +++ Y D+M+ I P+ VTYT +I +C +
Sbjct: 351 QRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRK-KIVPDFVTYTSMIHGLCQAGKVV 409
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L S + G KPD Y ++ GY
Sbjct: 410 EARKLFSEMLSKGLKPDEVTYTALIDGY 437
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ PD+ +Y+ +V C+ L V +++++ G+KPN TY +I +C T +
Sbjct: 280 FRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRK-GLKPNQYTYNSIISFLCKTGRV 338
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +++ + + PD VY T++ G+
Sbjct: 339 VEAEQVLRVMKNQRIFPDNVVYTTLISGF 367
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ CK + + + M G++P +VT+ +L++ C + L + R
Sbjct: 530 PDTITYTTIMDAYCKMGEMAKAHELLRIM-LDKGLQPTIVTFNVLMNGFCMSGMLEDGER 588
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G P+ +N++MK Y
Sbjct: 589 LIKWMLDKGIMPNATTFNSLMKQY 612
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+YN ++ LC+ + ++ + QM G P++V+Y++++D C + L + ++L+
Sbjct: 254 SYNIILHLLCQLGKVKEAHSLLIQMEFR-GNVPDVVSYSVIVDGYCQVEQLGKVLKLMEE 312
Query: 72 LSDSGFKPDCFVYNTIM 88
L G KP+ + YN+I+
Sbjct: 313 LQRKGLKPNQYTYNSII 329
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ T+N L+K C ++ M A G+ P+ TY ILI C +N++
Sbjct: 596 KGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQ-GVVPDTNTYNILIKGHCKARNMK 654
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + + GF YN+++KG+
Sbjct: 655 EAWFLHKEMVEKGFSLTAASYNSLIKGF 682
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+K CK R++ + F+ + G +Y LI K EA +
Sbjct: 635 PDTNTYNILIKGHCKARNMKEAW-FLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARK 693
Query: 68 LVSALSDSGFKPDCFVYN 85
L + GF + +Y+
Sbjct: 694 LFEEMRTHGFIAEKEIYD 711
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ +TYN ++ LCK + + M+ I P+ V YT LI + N+
Sbjct: 316 KGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR-IFPDNVVYTTLISGFGKSGNVS 374
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L + PD Y +++ G
Sbjct: 375 VEYKLFDEMKRKKIVPDFVTYTSMIHG 401
>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 775
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK + ++F+ +M+ S G+KPN+VTY+ LID +C L++A++
Sbjct: 320 PDVITYNALINCFCKYEQMPKAFHFLHEMKNS-GLKPNVVTYSTLIDALCKEHMLQQAIK 378
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G P+ F Y +++
Sbjct: 379 FLLDMRRVGLSPNEFTYTSLI 399
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +FTYN ++ +CK + T + QM+ +G+ P++VTY LID
Sbjct: 243 MVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMK-QMGLTPDIVTYNSLIDGYGKLG 301
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L E+ L + D G +PD YN ++
Sbjct: 302 LLDESFCLFEEMKDVGCEPDVITYNALI 329
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ FTY L+ CK L+ D+M + + N+VTYT L+D +C + EA
Sbjct: 388 LSPNEFTYTSLIDANCKAGYLSDALKLADEM-LQVQVGFNVVTYTTLLDGLCKEGRMMEA 446
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L A+ +G P+ Y ++ G+
Sbjct: 447 EDLFRAMIKAGVTPNLKTYTALVHGH 472
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ K L + ++M+ +G +P+++TY LI+ C + + +A
Sbjct: 283 LTPDIVTYNSLIDGYGKLGLLDESFCLFEEMK-DVGCEPDVITYNALINCFCKYEQMPKA 341
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + +SG KP+ Y+T++
Sbjct: 342 FHFLHEMKNSGLKPNVVTYSTLI 364
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY+ L+ LCK L F+ MR +G+ PN TYT LID C L +A
Sbjct: 353 LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMR-RVGLSPNEFTYTSLIDANCKAGYLSDA 411
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++L + + Y T++ G
Sbjct: 412 LKLADEMLQVQVGFNVVTYTTLLDG 436
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F P ++ L+ LCK + D+M+ + P+ + YT LID K+
Sbjct: 596 FNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDK-NMVPDKIAYTALIDGNLKHKDF 654
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA+ + S +S+ G + D Y +++ G
Sbjct: 655 QEALNIRSRMSELGMELDLHAYTSLVWG 682
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ ++ TY L+ LCK + + M + G+ PNL TYT L+ K +
Sbjct: 422 QVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKA-GVTPNLKTYTALVHGHIKNKRVEN 480
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + + KPD +Y TI+ G
Sbjct: 481 ALELLKEIKEKKIKPDLLLYGTIIWG 506
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
GI ++ TY I+I +C ++ A L + G PD YN+++ GY
Sbjct: 247 GIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGY 297
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LC L + +M+A GI+ N V YTI +D T EA+
Sbjct: 495 PDLLLYGTIIWGLCSQNKLEECEFVMSEMKAC-GIRANSVIYTIRMDAYFKTGKTVEALN 553
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D G + + ++ G
Sbjct: 554 LLQEMCDLGVEVTIVTFCVLIDG 576
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L P+ TYN L++ LC SL +M +S G+ PNL TY+IL+D +C +L
Sbjct: 290 KELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSS-GMLPNLRTYSILLDGLCKHGHLE 348
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L++++ + +PD +YN +++G
Sbjct: 349 EALKLLTSMQERKLEPDIVLYNILIQG 375
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PDI YN L++ + L ++ A+ GI+P++ TY I+I +
Sbjct: 360 RKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFAN-GIRPSVRTYNIMIKGLLKEGLSD 418
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + D GF PD YN I++G+
Sbjct: 419 EAYKLFRKMEDDGFLPDSCSYNVIIQGF 446
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD T+ L+ LC + ++M A PN VT+TIL+D +C + EA
Sbjct: 152 IQPDSVTFTTLINGLCNEGRIKEAVELFNEM-AGRDAMPNTVTFTILVDVLCKKGMVSEA 210
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G +P+ + YN +M GY
Sbjct: 211 RCVFETMTEKGVEPNIYTYNALMNGY 236
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I+TYN L+ C + + M G P++ +Y+ILI+ C ++ +
Sbjct: 220 KGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGK-GCAPSVHSYSILINGYCKSRRID 278
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L++ +S+ P+ YNT+M+G
Sbjct: 279 EAKALLTQMSEKELIPNTVTYNTLMQG 305
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+ LV LCK + + + V + G++PN+ TY L++ C + +A +
Sbjct: 189 PNTVTFTILVDVLCK-KGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASK 247
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P Y+ ++ GY
Sbjct: 248 VFEIMVGKGCAPSVHSYSILINGY 271
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + + K + +TV + +QM G+ N T ILI+++C ++ A+
Sbjct: 84 PSFVELGKFLGSIAKKKQYSTVVSLCNQMDL-FGVAHNDYTLNILINSLCRLSHIHFAVS 142
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++S + G +PD + T++ G
Sbjct: 143 VLSKMFKLGIQPDSVTFTTLING 165
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+P PD FTYN LV +C+ + V QM GI+PN+ TYT+L+D
Sbjct: 209 LRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGE-GIRPNVFTYTMLVDG 267
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
CN + EA R++ + + G P Y T++ G
Sbjct: 268 FCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 302
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+ L+ LC L + ++M A G++PN TY +L+ +C+ ++ +A+
Sbjct: 501 PDIITFTSLIDGLCNTHQLDDAFVCFEEM-AEWGVRPNAQTYNVLMHTLCSAGHVNKAID 559
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G PD + +N ++ +
Sbjct: 560 LLNKMKIDGVTPDAYSFNALILSF 583
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+P P YN L+ + ++ T Y QM A G +P+ TY L+ V
Sbjct: 175 VFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPAD-GCRPDHFTYNSLVHGV 233
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + EA+RLV + G +P+ F Y ++ G+
Sbjct: 234 CRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGF 268
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN--FVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
K P++ T+N L+ K L V+N V +M G P+++T+T LID +CNT
Sbjct: 462 KGFLPNLVTFNTLISGYSK---LGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQ 518
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A +++ G +P+ YN +M
Sbjct: 519 LDDAFVCFEEMAEWGVRPNAQTYNVLM 545
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L + +YN ++ C K ++ V +M+ G PNLVT+ LI
Sbjct: 424 MVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK-GFLPNLVTFNTLISGYSKLG 482
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A ++ L + GF PD + +++ G
Sbjct: 483 NVHNAKVVLKMLMEHGFMPDIITFTSLIDG 512
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC + + +++M+ G+ P+ ++ LI + C + + +A
Sbjct: 536 PNAQTYNVLMHTLCSAGHVNKAIDLLNKMKID-GVTPDAYSFNALILSFCRMRKVDKAED 594
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G PD + YN+++K
Sbjct: 595 IFNDMVRFGVVPDSYTYNSLIKA 617
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P Y ++K L C++ + +++ M G+ ++++Y ++ID + +A
Sbjct: 396 PGFDVYIMVIKSLLNCKNFSKANHYLGHMVLK-GLLSSVMSYNMVIDCFVKAGAVDKAEE 454
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + D GF P+ +NT++ GY
Sbjct: 455 IVKEMQDKGFLPNLVTFNTLISGY 478
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +++N L+ C+ R + + + M G+ P+ TY LI +C+ + + +A
Sbjct: 571 PDAYSFNALILSFCRMRKVDKAEDIFNDM-VRFGVVPDSYTYNSLIKALCDERRVNKAKE 629
Query: 68 LVSALSDSG 76
++ A SG
Sbjct: 630 ILFARERSG 638
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+P PD FTYN LV +C+ + V QM GI+PN+ TYT+L+D
Sbjct: 209 LRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGE-GIRPNVFTYTMLVDG 267
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
CN + EA R++ + + G P Y T++ G
Sbjct: 268 FCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 302
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+P P YN L+ + ++ T Y QM A G +P+ TY L+ V
Sbjct: 175 VFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPAD-GCRPDHFTYNSLVHGV 233
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + EA+RLV + G +P+ F Y ++ G+
Sbjct: 234 CRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGF 268
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L + +YN ++ C K ++ V +M+ G PNLVT+ LI
Sbjct: 424 MVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK-GFLPNLVTFNTLISGYSKLG 482
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A ++ L + GF PD + +++ G
Sbjct: 483 NVHNAKVVLKMLMEHGFMPDIITFTSLIDG 512
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P Y ++K L C++ + +++ M G+ ++++Y ++ID + +A
Sbjct: 396 PGFDVYIMVIKSLLNCKNFSKANHYLGHMVLK-GLLSSVMSYNMVIDCFVKAGAVDKAEE 454
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + D GF P+ +NT++ GY
Sbjct: 455 IVKEMQDKGFLPNLVTFNTLISGY 478
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN--FVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
K P++ T+N L+ K L V+N V +M G P+++T+T LID +CNT
Sbjct: 462 KGFLPNLVTFNTLISGYSK---LGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQ 518
Query: 62 LREAMRLVSALS--DSGFKP 79
L +A ++ D GF P
Sbjct: 519 LDDAFVCFEEMAEWDEGFVP 538
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFT N LVK LCK + + Y +D++ A +G+ PNLVTYT ++ ++ A R
Sbjct: 187 PNIFTCNLLVKALCKKNDIESAYKVLDEIPA-MGLVPNLVTYTTILGGYVARGDMESAKR 245
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D G+ PD Y +M GY
Sbjct: 246 VLEEMLDRGWYPDAITYTVLMDGY 269
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ +C+ LT D M KPN TY +LI+ + N++E +R
Sbjct: 396 PSLLTYNTLIAGMCEKGELTEAGRLWDDM-FERKCKPNAFTYNVLIEGLSKNGNVKEGVR 454
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + +SG P+ + + +G
Sbjct: 455 VLEEMLESGCFPNKTTFLILFEG 477
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + L+ LCK ++ D+ G P+L+TY LI +C L EA R
Sbjct: 362 PDNALLSTLIHWLCKEGRVSEARKLFDEFDK--GSIPSLLTYNTLIAGMCEKGELTEAGR 419
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + KP+ F YN +++G
Sbjct: 420 LWDDMFERKCKPNAFTYNVLIEG 442
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ CK + +D M + I+PN VTY ++I +C K EA
Sbjct: 257 PDAITYTVLMDGYCKLGRFSEAATVMDDMEKN-EIEPNEVTYGVMIRALCKEKKSGEARN 315
Query: 68 LVSALSDSGFKPD 80
+ + D F PD
Sbjct: 316 MFDEMLDRSFMPD 328
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ + N L+ L + + V+ + S GI PN+ T +L+ +C ++ A +++
Sbjct: 153 VRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVL 212
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y TI+ GY
Sbjct: 213 DEIPAMGLVPNLVTYTTILGGY 234
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+P PD FTYN LV +C+ + V QM GI+PN+ TYT+L+D
Sbjct: 209 LRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGE-GIRPNVFTYTMLVDG 267
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
CN + EA R++ + + G P Y T++ G
Sbjct: 268 FCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 302
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+ L+ LC L + ++M A G++PN TY +L+ +C+ ++ +A+
Sbjct: 501 PDIITFTSLIDGLCNTHQLDDAFVCFEEM-AEWGVRPNAQTYNVLMHTLCSAGHVNKAID 559
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G PD + +N ++ +
Sbjct: 560 LLNKMKIDGVTPDAYSFNALILSF 583
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+P P YN L+ + ++ T Y QM A G +P+ TY L+ V
Sbjct: 175 VFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPAD-GCRPDRFTYNSLVHGV 233
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + EA+RLV + G +P+ F Y ++ G+
Sbjct: 234 CRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGF 268
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN--FVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
K P++ T+N L+ K L V+N V +M G P+++T+T LID +CNT
Sbjct: 462 KGFLPNLVTFNTLISGYSK---LGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQ 518
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A +++ G +P+ YN +M
Sbjct: 519 LDDAFVCFEEMAEWGVRPNAQTYNVLM 545
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L + +YN ++ C K ++ V +M+ G PNLVT+ LI
Sbjct: 424 MVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK-GFLPNLVTFNTLISGYSKLG 482
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A ++ L + GF PD + +++ G
Sbjct: 483 NVHNAKVVLKMLMEHGFMPDIITFTSLIDG 512
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC + + +++M+ G+ P+ ++ LI + C + + +A
Sbjct: 536 PNAQTYNVLMHTLCSAGHVNKAIDLLNKMKID-GVTPDAYSFNALILSFCRMRKVDKAED 594
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G PD + YN+++K
Sbjct: 595 IFNDMVRFGVVPDSYTYNSLIKA 617
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P Y ++K L C++ + +++ M G+ ++++Y ++ID + +A
Sbjct: 396 PGFDVYIMVIKSLLNCKNFSKANHYLGHMVLK-GLLSSVMSYNMVIDCFVKAGAVDKAEE 454
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + D GF P+ +NT++ GY
Sbjct: 455 IVKEMQDKGFLPNLVTFNTLISGY 478
Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +++N L+ C+ R + + + M G+ P+ TY LI +C+ + + +A
Sbjct: 571 PDAYSFNALILSFCRMRKVDKAEDIFNDM-VRFGVVPDSYTYNSLIKALCDERRVNKAKE 629
Query: 68 LVSALSDSG 76
++ A SG
Sbjct: 630 ILFARERSG 638
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDIFTY+ L++ C+ + +M S G+ PNL+TY+I++D +C +L
Sbjct: 249 KSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM-CSYGLLPNLITYSIVLDGLCKHGHLD 307
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L+ A+ +S +P+ F+Y +++G
Sbjct: 308 EAFELLKAMQESKIEPNIFIYTILIEG 334
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD+FTY+ ++ C + + QM + PN VT+TILID +C +
Sbjct: 106 MVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQM-VERNVIPNKVTFTILIDGLCKKR 164
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + +++ G +PD + YN ++ GY
Sbjct: 165 MISEAWLVFETMTEKGLEPDVYTYNALVDGY 195
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ ++ LCK + T + +M G KPN+V Y +ID++C + + EAM
Sbjct: 43 PDVITYSTIINGLCKMGNTTMALQLLKKMEEK-GCKPNVVAYNTIIDSLCKDRLVTEAMD 101
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
S + G PD F Y++I+ G+
Sbjct: 102 FFSEMVKEGIPPDVFTYSSILHGF 125
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSL---TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K L PD++TYN LV C + ++N +D+ G PN+ +Y ILI+ C +
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRK----GCAPNVRSYNILINGHCKSG 234
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L++ +S PD F Y+T+M+G+
Sbjct: 235 RIDEAKGLLAEMSHKSLTPDIFTYSTLMRGF 265
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + T+N L+ LC + D+M +G +P+++TY+ +I+ +C N A
Sbjct: 6 LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEM-VKMGHEPDVITYSTIINGLCKMGNTTMA 64
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L+ + + G KP+ YNTI+
Sbjct: 65 LQLLKKMEEKGCKPNVVAYNTII 87
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY+ ++ LCK L + + M+ S I+PN+ YTILI+ +C L A
Sbjct: 286 LLPNLITYSIVLDGLCKHGHLDEAFELLKAMQES-KIEPNIFIYTILIEGMCTFGKLEAA 344
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L S L G +P Y ++ G
Sbjct: 345 RELFSNLFVKGIQPTVVTYTVMISG 369
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+IF Y L++ +C L + GI+P +VTYT++I + E
Sbjct: 320 KIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVK-GIQPTVVTYTVMISGLLKGGLSNE 378
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L ++ +G P+ YN I++G+
Sbjct: 379 ACELFREMAVNGCLPNSCTYNVIIQGF 405
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LG++P LVT+ L+ +C+ + +A++L + G +PD Y+TI+ G
Sbjct: 4 LGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIING 54
>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
Length = 682
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+P PD FTYN LV +C+ + V QM GI+PN+ TYT+L+D
Sbjct: 195 LRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGE-GIRPNVFTYTMLVDG 253
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
CN + EA R++ + + G P Y T++ G
Sbjct: 254 FCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 288
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+ L+ LC L + ++M A G++PN TY +L+ +C+ ++ +A+
Sbjct: 487 PDIITFTSLIDGLCNTHQLDDAFVCFEEM-AEWGVRPNAQTYNVLMHTLCSAGHVNKAID 545
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G PD + +N ++ +
Sbjct: 546 LLNKMKIDGVTPDAYSFNALILSF 569
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN--FVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
K P++ T+N L+ K L V+N V +M G P+++T+T LID +CNT
Sbjct: 448 KGFLPNLVTFNTLISGYSK---LGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQ 504
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A +++ G +P+ YN +M
Sbjct: 505 LDDAFVCFEEMAEWGVRPNAQTYNVLM 531
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L + +YN ++ C K ++ V +M+ G PNLVT+ LI
Sbjct: 410 MVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK-GFLPNLVTFNTLISGYSKLG 468
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A ++ L + GF PD + +++ G
Sbjct: 469 NVHNAKVVLKMLMEHGFMPDIITFTSLIDG 498
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC + + +++M+ G+ P+ ++ LI + C + + +A
Sbjct: 522 PNAQTYNVLMHTLCSAGHVNKAIDLLNKMKID-GVTPDAYSFNALILSFCRMRKVDKAED 580
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G PD + YN+++K
Sbjct: 581 IFNDMVRFGVVPDSYTYNSLIKA 603
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 25 SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVY 84
++ T Y QM A G +P+ TY L+ VC + EA+RLV + G +P+ F Y
Sbjct: 189 AVYTAYLRFQQMPAD-GCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTY 247
Query: 85 NTIMKGY 91
++ G+
Sbjct: 248 TMLVDGF 254
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P Y ++K L C++ + +++ M G+ ++++Y ++ID + +A
Sbjct: 382 PGFDVYIMVIKSLLNCKNFSKANHYLGHMVLK-GLLSSVMSYNMVIDCFVKAGAVDKAEE 440
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + D GF P+ +NT++ GY
Sbjct: 441 IVKEMQDKGFLPNLVTFNTLISGY 464
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +++N L+ C+ R + + + M G+ P+ TY LI +C+ + + +A
Sbjct: 557 PDAYSFNALILSFCRMRKVDKAEDIFNDM-VRFGVVPDSYTYNSLIKALCDERRVNKAKE 615
Query: 68 LVSALSDSG 76
++ A SG
Sbjct: 616 ILFARERSG 624
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD +TY L+ LC+ RS+ + +M G P++VTYT +I +C N+ EAM
Sbjct: 217 EPDSYTYGTLINGLCRFRSIVEAKELLQEMETK-GCSPSVVTYTSIIHGLCQLNNVDEAM 275
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
RL+ + D +P+ F Y+++M G+
Sbjct: 276 RLLEDMKDKNIEPNVFTYSSLMDGF 300
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++FTY+ L+ CK + + ++ M ++PN+++Y+ L++ +CN +
Sbjct: 284 KNIEPNVFTYSSLMDGFCKTGHSSRARDILELM-IQKRLRPNMISYSTLLNGLCNEGKIN 342
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ + + GFKPD +Y I+
Sbjct: 343 EALEIFDRMKLQGFKPDAGLYGKIV 367
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY ++ LC+ ++ ++ M+ I+PN+ TY+ L+D C T +
Sbjct: 249 KGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDK-NIEPNVFTYSSLMDGFCKTGHSS 307
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++ + +P+ Y+T++ G
Sbjct: 308 RARDILELMIQKRLRPNMISYSTLLNG 334
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC-NTKNLREAM 66
P +Y ++ L + L + + F MR +GI P + + +LI C N+ + +AM
Sbjct: 147 PTEKSYISVLAILVEENQLKSAFRFYRDMR-KMGIPPTVTSLNVLIKAFCKNSGTMDKAM 205
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L +S+ G +PD + Y T++ G
Sbjct: 206 HLFRTMSNHGCEPDSYTYGTLING 229
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTI-------LIDNVCNTK 60
PD Y +V CLC NF+D+M GIKPN +T+++ +I +C
Sbjct: 358 PDAGLYGKIVNCLCDVSRFQEAANFLDEM-VLCGIKPNRITWSLHVRTHNRVIHGLCTIN 416
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N A +L ++ G +N+++K
Sbjct: 417 NSNRAFQLYLSVLTRGISITVDTFNSLLK 445
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L P++ +Y+ L+ LC + D+M+ G KP+ Y +++ +C+
Sbjct: 316 MIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQ-GFKPDAGLYGKIVNCLCDVS 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA + + G KP+ ++ ++ +
Sbjct: 375 RFQEAANFLDEMVLCGIKPNRITWSLHVRTH 405
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L PD+ TYN L+ + R + V++M+A G+K N VT+ I+I C + E
Sbjct: 346 KLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKAR-GVKENGVTHNIMIKWFCTEGKIDE 404
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ + +SGF PDCF YNT++ GY
Sbjct: 405 ASNVMVKMVESGFSPDCFTYNTMINGY 431
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ LCK LT V + + QM+ S G+ PN TY IL+ C K L+EA
Sbjct: 244 PDNVTYNTVLTALCKRSQLTQVRDLLLQMKNS-GLFPNRNTYNILVHGYCKLKWLKEAAE 302
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G PD + YNT+++G
Sbjct: 303 VIELMTGKGMLPDVWTYNTMVRG 325
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVY--NFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P++ T N L+ L + S ++ V Q LG++PN+ T+ ILI C+ N EA
Sbjct: 171 PNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEA 230
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+RL++ + + G PD YNT++
Sbjct: 231 LRLINQMGEYGCCPDNVTYNTVL 253
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLT---TVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ L PDIFT N L++ LC+ L T++N S G + VTY I+I + C
Sbjct: 587 MVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFN----TWISKGKPMDTVTYNIIISSFC 642
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ L +A L++ + +PD + YN I+ G
Sbjct: 643 KERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTG 675
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN LV CK + L ++ M G+ P++ TY ++ +C+ + EA
Sbjct: 277 LFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGK-GMLPDVWTYNTMVRGLCDEGKIDEA 335
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+RL + PD YNT++ G
Sbjct: 336 VRLRDKMESFKLVPDVVTYNTLIDG 360
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN ++ CK + Y +D+M G+K + T L+ +C K L +A
Sbjct: 419 PDCFTYNTMINGYCKAGKMAEAYKMMDEM-GRKGLKLDTFTLNTLLHTMCLEKQLDDAYT 477
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L G+ D Y T++ GY
Sbjct: 478 LTMKARKRGYILDEVTYGTLIMGY 501
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L+ C + ++QM G P+ VTY ++ +C L +
Sbjct: 209 PNVNTFNILIHGYCSDNNTEEALRLINQM-GEYGCCPDNVTYNTVLTALCKRSQLTQVRD 267
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG P+ YN ++ GY
Sbjct: 268 LLLQMKNSGLFPNRNTYNILVHGY 291
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D FT N L+ +C + L Y + R G + VTY LI +
Sbjct: 450 KGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKR-GYILDEVTYGTLIMGYFKDEQAD 508
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A++L + ++G YNTI++G
Sbjct: 509 RALKLWEEMKETGIVATIITYNTIIRG 535
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I TYN +++ LC + ++++ G+ P+ T I+I C + +A +
Sbjct: 526 IITYNTIIRGLCLSGKTDQAVDKLNELLEK-GLVPDESTSNIIIHGYCWEGAVEKAFQFH 584
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ + + KPD F N +++G
Sbjct: 585 NKMVEHSLKPDIFTCNILLRG 605
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFT N LVK LCK + + Y +D++ S+G+ PNLVTYT ++ ++ A R
Sbjct: 189 PNIFTCNLLVKALCKKNDIESAYKVLDEI-PSMGLVPNLVTYTTILGGYVARGDMESAKR 247
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D G+ PD Y +M GY
Sbjct: 248 VLEEMLDRGWYPDATTYTVLMDGY 271
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + L+ LCK +T D+ G P+L+TY LI +C L EA R
Sbjct: 364 PDNALLSTLIHWLCKEGRVTEARKLFDEFEK--GSIPSLLTYNTLIAGMCEKGELTEAGR 421
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + KP+ F YN +++G
Sbjct: 422 LWDDMYERKCKPNAFTYNVLIEG 444
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ +C+ LT D M KPN TY +LI+ + N++E +R
Sbjct: 398 PSLLTYNTLIAGMCEKGELTEAGRLWDDMYER-KCKPNAFTYNVLIEGLSKNGNVKEGVR 456
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + G P+ + + +G
Sbjct: 457 VLEEMLEIGCFPNKTTFLILFEG 479
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ CK + +D M + I+PN VTY ++I +C K EA
Sbjct: 259 PDATTYTVLMDGYCKLGRFSEAATVMDDMEKN-EIEPNEVTYGVMIRALCKEKKSGEARN 317
Query: 68 LVSALSDSGFKPD 80
+ + + F PD
Sbjct: 318 MFDEMLERSFMPD 330
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ + N L+ L + + V+ + S GI PN+ T +L+ +C ++ A +++
Sbjct: 155 VRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVL 214
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y TI+ GY
Sbjct: 215 DEIPSMGLVPNLVTYTTILGGY 236
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTYN L++ L K ++ +++M +G PN T+ IL + + +AM+
Sbjct: 433 PNAFTYNVLIEGLSKNGNVKEGVRVLEEM-LEIGCFPNKTTFLILFEGLQKLGKEEDAMK 491
Query: 68 LVS 70
+VS
Sbjct: 492 IVS 494
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+K++ PD+ TYN L+ LCK ++T VD+MR S+G +++TY L+ +C +L
Sbjct: 280 WKKINPDVVTYNILIDGLCKLGKISTSLELVDEMR-SIGKTVDIITYNSLLHALCKNHHL 338
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ LV + D G +P+ Y T++ G
Sbjct: 339 DQAITLVKEIKDQGIQPNVCTYTTLIDG 366
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ Y+ ++ LCK + +T Y +M A GI PN+ T++IL+D +C + ++AM L
Sbjct: 146 DVVMYSTIIDSLCKGKFVTDAYRLYSEMIAK-GIFPNVYTFSILVDALCKDRKGKQAMNL 204
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ + G KP+ Y IM GY
Sbjct: 205 LAMMMKKGVKPNVVTYGAIMDGY 227
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+++T++ LV LCK R N + M G+KPN+VTY ++D C
Sbjct: 173 MIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKK-GVKPNVVTYGAIMDGYCLVN 231
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + + + G +P+ + YN I+ G
Sbjct: 232 QVNKALNIFNVMVQEGVEPNVWCYNIIING 261
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+++ YN ++ LCK + + N +M I P++VTY ILID +C
Sbjct: 243 MVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWK-KINPDVVTYNILIDGLCKLG 301
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ LV + G D YN+++
Sbjct: 302 KISTSLELVDEMRSIGKTVDIITYNSLLHA 331
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TY ++ C + N + M G++PN+ Y I+I+ +C K
Sbjct: 208 MMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQE-GVEPNVWCYNIIINGLCKKK 266
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM L + PD YN ++ G
Sbjct: 267 RVDEAMNLFKEMHWKKINPDVVTYNILIDG 296
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L F + P I T L+ C C +T +++ + ++ +G +PN +T+T LI +C
Sbjct: 36 LEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKI-LKMGYEPNSITFTTLIKGMCLNG 94
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + GFK D Y +M G
Sbjct: 95 QAYEALLFHDHVVAHGFKLDQVSYAILMNG 124
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N ++ L K T + Q+ + GIKP++VT TIL++ C+T +
Sbjct: 8 PPILQFNHILASLVKINHYPTAISLFRQLEFN-GIKPSIVTLTILMNCYCHTGGITFLFS 66
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + G++P+ + T++KG
Sbjct: 67 ILTKILKMGYEPNSITFTTLIKG 89
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++ TY L+ LCK L Y ++ G + TY ++I+ +C
Sbjct: 351 QGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTE-GYHITVWTYNVMINGLCKKGLFD 409
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ L+S + D+ PD Y TI+
Sbjct: 410 EALALLSRMEDNACIPDAVSYETII 434
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK QM + ++V Y+ +ID++C K + +A RL
Sbjct: 114 DQVSYAILMNGLCKMGETRAAM----QMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRL 169
Query: 69 VSALSDSGFKPDCFVYNTIM 88
S + G P+ + ++ ++
Sbjct: 170 YSEMIAKGIFPNVYTFSILV 189
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ +CK N +D+MRA G PN+VTY ++I+ +C + +A
Sbjct: 174 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK-GCTPNIVTYNVIINGMCREGRVDDAKE 232
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ LS GF+PD Y T++KG
Sbjct: 233 ILNRLSSYGFQPDIVSYTTVLKG 255
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD +TY +++ LC + +D M G +P++VTYT+L++ VC + EA
Sbjct: 137 VPPDAYTYTPIIRGLCDRGRVGDALALLDDM-LQRGCQPSVVTYTVLLEAVCKSSGFGEA 195
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M ++ + G P+ YN I+ G
Sbjct: 196 MNVLDEMRAKGCTPNIVTYNVIING 220
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P + T+N LV C+ + V+QM G PNL+T+ L+D +
Sbjct: 479 MIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEH-GCTPNLITFNTLLDGITKDC 537
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N EA+ L+ L G D Y++++
Sbjct: 538 NSEEALELLHGLVSKGVSLDTITYSSVV 565
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR---ASLGIKPNLVTYTILIDNVCNTKNLR 63
P D+F YN LV C+ Y +D R AS+ + P+ TYT +I +C+ +
Sbjct: 106 PVDVFAYNTLVAGYCR-------YGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVG 158
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ + G +P Y +++
Sbjct: 159 DALALLDDMLQRGCQPSVVTYTVLLEA 185
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F LP P+ TY L+ LC L + M N VT+ +L+ C
Sbjct: 443 LFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGM-IQKDCPLNAVTFNVLVSFFCQK 501
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM LV+ + + G P+ +NT++ G
Sbjct: 502 GFVEEAMELVNQMMEHGCTPNLITFNTLLDG 532
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+ P+ T++ LV+ C+ + + QM + G PN I+I+ +C
Sbjct: 272 MVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQM-SQHGCTPNTTLCNIVINAICKQG 330
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A ++ + G PD Y T+++G
Sbjct: 331 RVDDAYDFLNNMGMYGCNPDTISYTTVLRG 360
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 35 QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +S G P++ T LI N+C +A R++ SG D F YNT++ GY
Sbjct: 63 ETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGY 119
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+I TYN ++ +C+ + ++++ +S G +P++V+YT ++ +C +
Sbjct: 205 KGCTPNIVTYNVIINGMCREGRVDDAKEILNRL-SSYGFQPDIVSYTTVLKGLCAARRWD 263
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+ L + + D P+ ++ +++
Sbjct: 264 DVKVLFAEMVDKKCVPNEVTFDMLVR 289
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P+IF YN LV LCK + D M G++P+ VTY+ +ID C ++N+
Sbjct: 587 LKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK-GLEPDSVTYSTMIDGYCKSENV 645
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + G +P FVYN ++ G
Sbjct: 646 AEAFSLFHEMPSKGVQPHSFVYNALVHG 673
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTY+ L+ CK + + D+M GI PN+ Y L+D +C + +++
Sbjct: 553 KGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK-GIAPNIFIYNALVDGLCKSGDIQ 611
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + + G +PD Y+T++ GY
Sbjct: 612 RARKLFDGMPEKGLEPDSVTYSTMIDGY 639
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P +Y ++ LC C+ L+ +++M S G+KPN+V Y+ LI + +
Sbjct: 343 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFS-GLKPNVVVYSTLIMGYASEGRIE 401
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA RL+ +S SG PD F YN I+
Sbjct: 402 EARRLLDGMSCSGVAPDIFCYNAII 426
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+ L++ C+ ++ +D+M + P+ V+Y +I+ +C+ K+L A +
Sbjct: 312 PNSRTFCLLIEGYCREHNMGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDLSLANK 370
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ SG KP+ VY+T++ GY
Sbjct: 371 LLEKMTFSGLKPNVVVYSTLIMGY 394
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDIF YN ++ CL K + ++ +++ G+KP+ VT+ I T + EA
Sbjct: 415 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEA 473
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G P+ +Y ++ G+
Sbjct: 474 AKYFDEMLDHGLMPNNPLYTVLINGH 499
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ ++ CK ++ ++ +M S G++P+ Y L+ C ++
Sbjct: 623 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM-PSKGVQPHSFVYNALVHGCCKEGDME 681
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+AM L + GF +NT++ GY
Sbjct: 682 KAMNLFREMLQKGFAT-TLSFNTLIDGY 708
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P ++ TYN L+ LCK + + M +LG KPN T+ +LI+ C N+ A
Sbjct: 275 IPINLITYNVLIHGLCKFGKMEKAAEILKGM-ITLGCKPNSRTFCLLIEGYCREHNMGRA 333
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + P Y ++ G
Sbjct: 334 LELLDEMEKRNLVPSAVSYGAMING 358
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY ++ CK +L + D++ G+ + +LI +C +
Sbjct: 794 MVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGK-GMLTKGTIHDLLITALCKRE 852
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L EA +L+ + + G KP +T+++ +
Sbjct: 853 DLTEASKLLDEMGELGLKPSLAACSTLVRSF 883
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
++ L+ LCK LT +D+M LG+KP+L + L+ + + EA R+ +
Sbjct: 841 HDLLITALCKREDLTEASKLLDEM-GELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV 899
Query: 73 SDSGFKPD 80
G PD
Sbjct: 900 KSLGLVPD 907
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ Y L+ K +L + + A LG+ P++ T + I + ++EA
Sbjct: 485 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHA-LGVLPDVQTCSAFIHGLLKNGRVQEA 543
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ S L + G PD F Y++++ G+
Sbjct: 544 LKVFSELKEKGLVPDVFTYSSLISGF 569
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ +TY + LC+ + + ++M+ + G+KP+ + LID ++
Sbjct: 203 KGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKT-GLKPDYNACSALIDGFMREGDID 261
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
E +R+ + G + YN ++ G
Sbjct: 262 EVLRIKDVMVSCGIPINLITYNVLIHG 288
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
++N L+ CK + +M A I P+ VTYT +ID C + EA L
Sbjct: 699 LSFNTLIDGYCKSCKIQEASQLFQEMIAKQ-IMPDHVTYTTVIDWHCKAGKMEEANLLFK 757
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ + D Y ++M GY
Sbjct: 758 EMQERNLIVDTVTYTSLMYGY 778
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD T+ + K +T + D+M G+ PN YT+LI+ NL
Sbjct: 448 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNNPLYTVLINGHFKAGNLM 506
Query: 64 EAMRLVSALSDSGFKPD-----CFVYNTIMKG 90
EA+ + L G PD F++ + G
Sbjct: 507 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNG 538
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F ++P P F YN LV CK + N +M G L ++ LID
Sbjct: 651 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK-GFATTL-SFNTLIDGY 708
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + ++EA +L + PD Y T++ +
Sbjct: 709 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWH 743
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 20 LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKP 79
L +C SL ++ G+ PN TYTI+ +C K + EA + +G KP
Sbjct: 191 LIRCNSLRSM--------GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKP 242
Query: 80 DCFVYNTIMKGY 91
D + ++ G+
Sbjct: 243 DYNACSALIDGF 254
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD + L+ + + V D M S GI NL+TY +LI +C + +A
Sbjct: 240 LKPDYNACSALIDGFMREGDIDEVLRIKDVM-VSCGIPINLITYNVLIHGLCKFGKMEKA 298
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G KP+ + +++GY
Sbjct: 299 AEILKGMITLGCKPNSRTFCLLIEGY 324
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ +CK N +D+MRA G PN+VTY ++I+ +C + +A
Sbjct: 185 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK-GCTPNIVTYNVIINGMCREGRVDDAKE 243
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ LS GF+PD Y T++KG
Sbjct: 244 ILNRLSSYGFQPDIVSYTTVLKG 266
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P + T+N LV C+ + V+QM G PNL+T+ L+D +
Sbjct: 490 MIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEH-GCTPNLITFNTLLDGITKDC 548
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N EA+ L+ L G D Y++++
Sbjct: 549 NSEEALELLHGLVSKGVSLDTITYSSVV 576
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G +P++VTYT+L++ VC + EAM ++ + G P+ YN I+ G
Sbjct: 182 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIING 231
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F LP P+ TY L+ LC L + +M N VT+ +L+ C
Sbjct: 454 LFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEM-IQKDCPLNAVTFNVLVSFFCQK 512
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM LV+ + + G P+ +NT++ G
Sbjct: 513 GFVEEAMELVNQMMEHGCTPNLITFNTLLDG 543
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+ P+ T++ LV+ C+ + + QM + G PN I+I+ +C
Sbjct: 283 MVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQM-SQHGCTPNTTLCNIVINAICKQG 341
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A ++ + G PD Y T+++G
Sbjct: 342 RVDDAYDFLNNMGMYGCNPDTISYTTVLRG 371
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+I TYN ++ +C+ + ++++ +S G +P++V+YT ++ +C +
Sbjct: 216 KGCTPNIVTYNVIINGMCREGRVDDAKEILNRL-SSYGFQPDIVSYTTVLKGLCAARRWD 274
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+ L + + D P+ ++ +++
Sbjct: 275 DVKVLFAEMVDKKCVPNEVTFDMLVR 300
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y +++ LC+ + +M PN VT+ I +C + +A++
Sbjct: 360 PDTISYTTVLRGLCRAGRWEHAKELLPEM-VRKNCPPNEVTFNTFICILCQKGLIEQAIK 418
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G YN ++ G+
Sbjct: 419 LIELMPEYGCSVGIVTYNALVHGF 442
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN LV LC+ + +N V M + S + PN+VTYT LI C +++ EA+
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G KP+ YNT+++G
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQG 352
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L++ C + + + + +M S G+KPN +TY LI +C + L +
Sbjct: 304 LSPNVVTYTTLIRGYCMKQDMAEALSLLAEM-VSRGLKPNKITYNTLIQGLCEAQKLDKI 362
Query: 66 MRLVSAL-SDSGFKPDCFVYNTIMKGY 91
++ + D GF PD NT++K +
Sbjct: 363 KEILEGMVGDGGFIPDTCTLNTLIKAH 389
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ TYN L++ LC+ + L + ++ M G P+ T LI C
Sbjct: 334 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 393
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
L EA + +S+ +PD Y+ +++
Sbjct: 394 KLEEAFSVFEKMSELRVQPDSATYSVLVR 422
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N L+ + K + D+M + G+ P+ T+ ILI C + E
Sbjct: 198 PSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFW 257
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S PD YNT++ G
Sbjct: 258 FFKEMSRFKCDPDVVTYNTLVDG 280
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T N L+K C L ++ ++M + L ++P+ TY++L+ ++C + R A
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKM-SELRVQPDSATYSVLVRSLCQRGDFRRAEE 435
Query: 68 LVSALS-------DSGFKPDCFVYNTIMK 89
L+ D G KP YN + +
Sbjct: 436 FFDELAEKEILLHDVGCKPLVAAYNPMFE 464
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS------LGIKPNLVTYTILIDNVCN 58
++ PD TY+ LV+ LC+ F D++ +G KP + Y + + +C+
Sbjct: 409 RVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCS 468
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++A R+ L G + D Y T++ G+
Sbjct: 469 NGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGH 500
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN LV LC+ + +N V M + S + PN+VTYT LI C +++ EA+
Sbjct: 340 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 399
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G KP+ YNT+++G
Sbjct: 400 SLLAEMVSRGLKPNKITYNTLIQG 423
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L++ C + + + + +M S G+KPN +TY LI +C + L +
Sbjct: 375 LSPNVVTYTTLIRGYCMKQDMAEALSLLAEM-VSRGLKPNKITYNTLIQGLCEAQKLDKI 433
Query: 66 MRLVSAL-SDSGFKPDCFVYNTIMKGY 91
++ + D GF PD NT++K +
Sbjct: 434 KEILEGMVGDGGFIPDTCTLNTLIKAH 460
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ TYN L++ LC+ + L + ++ M G P+ T LI C
Sbjct: 405 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 464
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
L EA + +S+ +PD Y+ +++
Sbjct: 465 KLEEAFSVFEKMSELRVQPDSATYSVLVR 493
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N L+ + K + D+M + G+ P+ T+ ILI C + E
Sbjct: 269 PSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFW 328
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S PD YNT++ G
Sbjct: 329 FFKEMSRFKCDPDVVTYNTLVDG 351
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T N L+K C L ++ ++M + L ++P+ TY++L+ ++C + R A
Sbjct: 448 PDTCTLNTLIKAHCTMGKLEEAFSVFEKM-SELRVQPDSATYSVLVRSLCQRGDFRRAEE 506
Query: 68 LVSALS-------DSGFKPDCFVYNTIMK 89
L+ D G KP YN + +
Sbjct: 507 FFDELAEKEILLHDVGCKPLVAAYNPMFE 535
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS------LGIKPNLVTYTILIDNVCN 58
++ PD TY+ LV+ LC+ F D++ +G KP + Y + + +C+
Sbjct: 480 RVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCS 539
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++A R+ L G + D Y T++ G+
Sbjct: 540 NGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGH 571
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRA---------------SLGIKPNLVTYTILIDNV 56
+Y +++ L + R+L NFV + +G+ P++VT+ L+ V
Sbjct: 222 SYFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIKVFKTMKEIGVSPSVVTFNSLLSIV 281
Query: 57 CNTKNLREAMRLVSALSDS-GFKPDCFVYNTIMKGY 91
A +L + D+ G PD + +N +++G+
Sbjct: 282 LKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGF 317
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P+IF YN LV LCK + D M G++P+ VTY+ +ID C ++N+
Sbjct: 676 LKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK-GLEPDSVTYSTMIDGYCKSENV 734
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + G +P FVYN ++ G
Sbjct: 735 AEAFSLFHEMPSKGVQPHSFVYNALVHG 762
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTY+ L+ CK + + D+M GI PN+ Y L+D +C + +++
Sbjct: 642 KGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK-GIAPNIFIYNALVDGLCKSGDIQ 700
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + + G +PD Y+T++ GY
Sbjct: 701 RARKLFDGMPEKGLEPDSVTYSTMIDGY 728
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P +Y ++ LC C+ L+ +++M S G+KPN+V Y+ILI + +
Sbjct: 432 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFS-GLKPNVVVYSILIMAYASEGRIE 490
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA RL+ +S SG PD F YN I+
Sbjct: 491 EARRLLDGMSCSGVAPDIFCYNAII 515
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++TY +LV LCK L + +M G+ PN Y+++I+ +C ++ EA+ L
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEK-GLNPNEFIYSLVIEGMCQVGDIDEAVEL 285
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + G P+ + Y I G
Sbjct: 286 KRSMGEKGLVPNTYTYTIITAG 307
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDIF YN ++ CL K + ++ +++ G+KP+ VT+ I T + EA
Sbjct: 504 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEA 562
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G P+ +Y ++ G+
Sbjct: 563 AKYFDEMLDHGLMPNNPLYTVLINGH 588
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P ++ TYN L+ LCK + + M +LG KPN T+ +LI+ C N+ A
Sbjct: 364 IPINLITYNVLIHGLCKFGKMEKAAEILKGM-VTLGCKPNSRTFCLLIEGYCREHNMGRA 422
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + P Y ++ G
Sbjct: 423 LELLDEMEKRNLVPSAVSYGAMING 447
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ ++ CK ++ ++ +M S G++P+ Y L+ C ++
Sbjct: 712 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM-PSKGVQPHSFVYNALVHGCCKEGDME 770
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+AM L + GF +NT++ GY
Sbjct: 771 KAMNLFREMLQKGFAT-TLSFNTLIDGY 797
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ F Y+ +++ +C+ + M G+ PN TYTI+ +C K +
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSM-GEKGLVPNTYTYTIITAGLCRAKRMN 315
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + +G KPD + ++ G+
Sbjct: 316 EAKLTFEEMQKTGLKPDYNACSALIDGF 343
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+ L++ C+ ++ +D+M + P+ V+Y +I+ +C+ K+L A +
Sbjct: 401 PNSRTFCLLIEGYCREHNMGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDLSLANK 459
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ SG KP+ VY+ ++ Y
Sbjct: 460 LLEKMTFSGLKPNVVVYSILIMAY 483
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY ++ CK +L + D++ G+ + +LI +C +
Sbjct: 883 MVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGK-GMLTKGTIHDLLITALCKRE 941
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L EA +L+ + + G KP NT+++ +
Sbjct: 942 DLTEASKLLDEMGELGLKPSLAACNTLVRSF 972
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
N L+K L KC + + + M A +G ++ TYT L+ +C T +LR A R++ +
Sbjct: 197 NSLLKDLLKCGMMELFWKVYNGMLDAKMGF--DVYTYTYLVGALCKTGDLRGAKRVLIEM 254
Query: 73 SDSGFKPDCFVYNTIMKG 90
+ G P+ F+Y+ +++G
Sbjct: 255 DEKGLNPNEFIYSLVIEG 272
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ Y L+ K +L + ++ A LG+ P++ T + I + ++EA
Sbjct: 574 LMPNNPLYTVLINGHFKAGNLMEALSIFRRLHA-LGVLPDVQTCSAFIHGLLKNGRVQEA 632
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ S L + G PD F Y++++ G+
Sbjct: 633 LKVFSELKEKGLVPDVFTYSSLISGF 658
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
++ L+ LCK LT +D+M LG+KP+L L+ + + EA R+ +
Sbjct: 930 HDLLITALCKREDLTEASKLLDEM-GELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGV 988
Query: 73 SDSGFKPD 80
G PD
Sbjct: 989 KSLGLVPD 996
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ +TY + LC+ + + ++M+ + G+KP+ + LID ++
Sbjct: 292 KGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKT-GLKPDYNACSALIDGFMREGDID 350
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
E +R+ + G + YN ++ G
Sbjct: 351 EVLRIKDVMVSCGIPINLITYNVLIHG 377
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
++N L+ CK + +M A I P+ VTYT +ID C + EA L
Sbjct: 788 LSFNTLIDGYCKSCKIQEASQLFQEMIAKQ-IMPDHVTYTTVIDWHCKAGKMEEANLLFK 846
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ + D Y ++M GY
Sbjct: 847 EMQERNLIVDTVTYTSLMYGY 867
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD T+ + K +T + D+M G+ PN YT+LI+ NL
Sbjct: 537 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNNPLYTVLINGHFKAGNLM 595
Query: 64 EAMRLVSALSDSGFKPD-----CFVYNTIMKG 90
EA+ + L G PD F++ + G
Sbjct: 596 EALSIFRRLHALGVLPDVQTCSAFIHGLLKNG 627
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F ++P P F YN LV CK + N +M G L ++ LID
Sbjct: 740 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK-GFATTL-SFNTLIDGY 797
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + ++EA +L + PD Y T++ +
Sbjct: 798 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWH 832
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD + L+ + + V D M S GI NL+TY +LI +C + +A
Sbjct: 329 LKPDYNACSALIDGFMREGDIDEVLRIKDVM-VSCGIPINLITYNVLIHGLCKFGKMEKA 387
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G KP+ + +++GY
Sbjct: 388 AEILKGMVTLGCKPNSRTFCLLIEGY 413
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD+ TY L+ +CK +L F DQM G++PN VTYT LI+ + EA
Sbjct: 339 LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVR-GLRPNGVTYTSLINGFSQKGFMDEA 397
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R+ + SGF P YN ++ G+
Sbjct: 398 YRIWDEMIRSGFPPTIVTYNALLNGH 423
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ CK + + + + M G++PNL+TY ++I+ +C + E
Sbjct: 236 PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLE-GLEPNLLTYNMVINGLCRVGRIEETSG 294
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + GF PD YNT++ GY
Sbjct: 295 VLAEMDRKGFAPDGVTYNTLVNGY 318
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ LC+ R L + +M + + P+ TYT LI+ C
Sbjct: 474 MVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEM-LNKSLLPDEFTYTSLINGYCKEG 532
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L EA+ L + GF PD YN ++ G
Sbjct: 533 DLNEALNLHDEMIKKGFLPDTVTYNVLING 562
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ +Y+ ++ C+ + L + +M G+ P+ +TY+ LI +C + L
Sbjct: 442 KGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEM-VEKGVSPDAITYSSLIQGLCEQRRLN 500
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + + PD F Y +++ GY
Sbjct: 501 EACDLFQEMLNKSLLPDEFTYTSLINGY 528
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD TYN LV CK + +M + G+ P++VTYT LI+ +C NL
Sbjct: 302 KGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRN-GLPPDVVTYTSLINTMCKAGNLN 360
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM + G +P+ Y +++ G+
Sbjct: 361 RAMEFFDQMHVRGLRPNGVTYTSLINGF 388
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I PP I TYN L+ C + + M G+ P++V+Y+ +I C +
Sbjct: 404 MIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGK-GLSPDVVSYSTIIAGFCRYQ 462
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A ++ + + + G PD Y+++++G
Sbjct: 463 ELDRAFQMNAEMVEKGVSPDAITYSSLIQG 492
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L P++ TYN ++ LC+ + + +M G P+ VTY L++ C N
Sbjct: 266 LEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRK-GFAPDGVTYNTLVNGYCKVGNF 324
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L S + +G PD Y +++
Sbjct: 325 HQALVLHSEMLRNGLPPDVVTYTSLI 350
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD FTY L+ CK L N D+M G P+ VTY +LI+ +
Sbjct: 509 MLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKK-GFLPDTVTYNVLINGLNKQA 567
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
REA RL+ L P+ Y+T+++
Sbjct: 568 RTREAKRLLLKLFYDESIPNGITYDTLIE 596
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +YN ++ + +CR V + + G+ N+ +Y ILI C NL +R
Sbjct: 165 PGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLR 224
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + P+ YNT++ Y
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAY 248
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++F Y L+ CK + V + + +M +S GI+PN +TYTI+ID C N++
Sbjct: 705 EGLLPNVFCYTALIGGHCKLGQMDIVGSILLEM-SSNGIRPNKITYTIMIDGYCKLGNMK 763
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L++ + +G PD YN + KGY
Sbjct: 764 EARELLNEMIRNGIAPDTVTYNALQKGY 791
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P + TY L+ L K + +M S+G PN V + LID C
Sbjct: 316 MVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEM-YSMGFAPNEVVFNALIDGYCRKG 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ EA+R+ ++ G KP+ +NT+++G+
Sbjct: 375 DMGEALRVRDEMAMKGMKPNFVTFNTLLQGF 405
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD +TYNFL+K L + V+ + + + G PN+ TY +L++ C
Sbjct: 562 MVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAK-EYGFVPNVYTYALLLEGYCKAD 620
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A++ L + VYN ++ Y
Sbjct: 621 RIEDAVKFFKNLDYEKVELSSVVYNILIAAY 651
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + T N L+ LC+ ++ V+ + QM G+ + ++Y LI C +
Sbjct: 495 KGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEK-GLLLDRISYNTLIFGCCKWGKIE 553
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + F+PD + YN +MKG
Sbjct: 554 EAFKLKEEMVQQEFQPDTYTYNFLMKG 580
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L ++++ YN L+ C+ ++T + D M+ S GI P TY+ LI +C
Sbjct: 632 LDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMK-SRGILPTCATYSSLIHGMCCIG 690
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + + G P+ F Y ++ G+
Sbjct: 691 RVDEAKEIFEEMRNEGLLPNVFCYTALIGGH 721
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+FT+ + CK + + +M LG+ PN+VTY +ID + +
Sbjct: 249 QGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEG-LGVFPNVVTYNNVIDGLFKSGRFE 307
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R + S P Y ++ G
Sbjct: 308 EALRFKDRMVRSKVNPSVVTYGVLISG 334
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY L++ CK + F + ++ + V Y ILI C N+ EA +
Sbjct: 604 PNVYTYALLLEGYCKADRIEDAVKFFKNLDYE-KVELSSVVYNILIAAYCRIGNVTEAFK 662
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L A+ G P C Y++++ G
Sbjct: 663 LRDAMKSRGILPTCATYSSLIHG 685
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T N L+ L K L Y D A G+ P++ T+T I+ C + +A+
Sbjct: 219 PCLKTCNLLLSSLVKANELHKSYEVFDL--ACQGVAPDVFTFTTAINAFCKGGRVGDAVD 276
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P+ YN ++ G
Sbjct: 277 LFCKMEGLGVFPNVVTYNNVIDG 299
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N L+ C+ + D+M A G+KPN VT+ L+ C + + +A +
Sbjct: 358 PNEVVFNALIDGYCRKGDMGEALRVRDEM-AMKGMKPNFVTFNTLLQGFCRSNQMEQAEQ 416
Query: 68 LVSALSDSGF 77
++ + SG
Sbjct: 417 VLVYILSSGL 426
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK R L+ +++M+ G+ P+L T+T LI C N+ +A++
Sbjct: 367 PDVVTYNTLLNGLCKERRLSDAEELLNEMKER-GVPPDLCTFTTLIHGYCRDGNIEKALQ 425
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+SD +PD YNT++ G
Sbjct: 426 FFDTISDQRLRPDIVTYNTLIDG 448
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PDI TYN L+ +C+ L D M S I PN VTY+ILID+ C +
Sbjct: 433 QRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMH-SREIFPNHVTYSILIDSHCEKGQVD 491
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + + G P+ YN+I+KGY
Sbjct: 492 NAFAFLDEMVNKGIVPNIMTYNSIIKGY 519
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+I TYN ++K C+ +++ F+ +MR + P+L+TY LI
Sbjct: 500 MVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD-KVMPDLITYNTLIHGYVKEG 558
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L+ + + +PD YN I+ G+
Sbjct: 559 KMHEAFNLLKIMENENVQPDAVTYNMIISGF 589
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+ TY+ L+ C+ + + F+D+M + GI PN++TY +I C + N+
Sbjct: 468 REIFPNHVTYSILIDSHCEKGQVDNAFAFLDEM-VNKGIVPNIMTYNSIIKGYCRSGNVS 526
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + PD YNT++ GY
Sbjct: 527 KGQQFLPKMRHDKVMPDLITYNTLIHGY 554
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y ++ C+ + D+M A G P++VTY L++ +C + L +A
Sbjct: 330 LMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVA-FGCLPDVVTYNTLLNGLCKERRLSDA 388
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + G PD + T++ GY
Sbjct: 389 EELLNEMKERGVPPDLCTFTTLIHGY 414
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+ +T N +V CK V + +M + P++VT+ +++D ++ AM L
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRC-VFPDVVTHNVMVDARFRAGDVEAAMAL 216
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ ++ G KP YN+++KG
Sbjct: 217 IDSMVSKGIKPGLVTYNSVLKG 238
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ +++ L+ + + ++ +MR G+ P+ V YT++I C +
Sbjct: 293 RRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMR-EFGLMPDGVIYTMVIGGFCRAGLML 351
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R+ + G PD YNT++ G
Sbjct: 352 EALRVRDEMVAFGCLPDVVTYNTLLNG 378
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ K + +N + M ++P+ VTY ++I N++EA
Sbjct: 542 PDLITYNTLIHGYVKEGKMHEAFNLLKIMENE-NVQPDAVTYNMIISGFSVHGNMQEADW 600
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G +PD + Y +++ G+
Sbjct: 601 VYKKMGARGIEPDRYTYMSMINGH 624
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N +V + + +D M S GIKP LVTY ++ + +A
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSM-VSKGIKPGLVTYNSVLKGLLRNGRWDKARE 250
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ G PD +N ++ G+
Sbjct: 251 VFRAMDACGVAPDVRSFNMLIGGF 274
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ ++N L+ C+ L F +MR + P++V+++ LI + A
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRR-VTPDVVSFSCLIGLFTRRGEMDHAAE 320
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G PD +Y ++ G+
Sbjct: 321 YLREMREFGLMPDGVIYTMVIGGF 344
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN LV LC+ + +N V M + S + PN+VTYT LI C +++ EA+
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G KP+ YNT+++G
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQG 352
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L++ C + + + + +M S G+KPN +TY LI +C + L +
Sbjct: 304 LSPNVVTYTTLIRGYCMKQDMAEALSLLAEM-VSRGLKPNKITYNTLIQGLCEAQKLDKI 362
Query: 66 MRLVSAL-SDSGFKPDCFVYNTIMKGY 91
++ + D GF PD NT++K +
Sbjct: 363 KEILEGMVGDGGFIPDTCTLNTLIKAH 389
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ TYN L++ LC+ + L + ++ M G P+ T LI C
Sbjct: 334 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 393
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
L EA + +S+ +PD Y+ +++
Sbjct: 394 KLEEAFSVFEKMSELRVQPDSATYSVLVR 422
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N L+ + K + D+M + G+ P+ T+ ILI C + E
Sbjct: 198 PSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFW 257
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S PD YNT++ G
Sbjct: 258 FFKEMSRFKCDPDVVTYNTLVDG 280
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T N L+K C L ++ ++M + L ++P+ TY++L+ ++C + R A
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKM-SELRVQPDSATYSVLVRSLCQRGDFRRAEE 435
Query: 68 LVSALS-------DSGFKPDCFVYNTIMK 89
L+ D G KP YN + +
Sbjct: 436 FFDELAEKEILLHDVGCKPLVAAYNPMFE 464
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS------LGIKPNLVTYTILIDNVCN 58
++ PD TY+ LV+ LC+ F D++ +G KP + Y + + +C+
Sbjct: 409 RVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCS 468
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++A R+ L G + D Y T++ G+
Sbjct: 469 NGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGH 500
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F+++P PD +TY L+ LCK ++ +D+M G+ P++V+YT LI +
Sbjct: 178 LFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEK-GLSPSVVSYTSLIHGL 236
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + NL EA+ L+ + +G +P+ F Y+++M G
Sbjct: 237 CQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDG 270
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++FTY+ L+ LCK + ++ M + PN+VTY+ LI+ +C
Sbjct: 252 MIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVM-VRRRLLPNMVTYSTLINGLCKEG 310
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
REA+ ++ + G KPD +Y I+ G
Sbjct: 311 KHREAVEILDRMRLQGLKPDAGMYGRIISG 340
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC-NTKNLR 63
Q+ P +Y + L + + F +MR GI P +V+ ILI +C N + +
Sbjct: 115 QVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREK-GIPPTVVSLNILIKALCKNEETVE 173
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A RL + + G +PD + Y T++ G
Sbjct: 174 SAFRLFREMPNRGCQPDSYTYGTLING 200
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT-------ILIDNVCN 58
L PD Y ++ LC + NF+D+M A GI PN ++T +++ +CN
Sbjct: 327 LKPDAGMYGRIISGLCAACNYQEAANFIDEM-ALGGISPNRASWTFHVKMHNMVVQGLCN 385
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A +L ++ G + ++ ++K +
Sbjct: 386 NVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCF 418
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K +P ++ TYN ++ LC R + Y + D+M GI PN +YTILI+ CN
Sbjct: 591 MLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEK-GILPNKFSYTILINESCNMG 649
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+RL + D +PD F ++ +K
Sbjct: 650 YWEEALRLYREMLDRKIQPDSFTHSVFLK 678
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD F YN + K + ++ ++M A+ G P+++TY + + +C
Sbjct: 451 MLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAA-GFPPDVITYNVFVHALCQQG 509
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N EA L+ + G PD Y +I+ G+
Sbjct: 510 NFEEACDLLENMVSDGLIPDHVTYTSIINGF 540
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD+ TYN V LC+ + + ++ M S G+ P+ VTYT +I+ +LR+A
Sbjct: 491 FPPDVITYNVFVHALCQQGNFEEACDLLENM-VSDGLIPDHVTYTSIINGFVKNGHLRKA 549
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P Y ++ +
Sbjct: 550 REVFNEMLSKGVAPSVVTYTVLIHAH 575
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PDI ++N L+ C+ ++ + D+++ + P ++TY LI +C L
Sbjct: 350 KFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCR-DLVPTVITYNTLIHGLCMWGYLDA 408
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL ++D G PD F Y ++ G
Sbjct: 409 ALRLKKEMTDQGLFPDIFTYTILVNG 434
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L PD+ N +++ L L+ N V M GIKP +VTY ++D+ C
Sbjct: 171 MIRNGLLPDVKNCNRILRVLRDENLLSKAKN-VYGMMEQFGIKPTVVTYNTMLDSYCKEG 229
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L+S + + G P+ YN ++ G
Sbjct: 230 RVDQALELLSEMQERGCYPNDVTYNVLVNG 259
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + TYN ++ CK + + +M+ G PN VTY +L++ + L +A
Sbjct: 211 IKPTVVTYNTMLDSYCKEGRVDQALELLSEMQER-GCYPNDVTYNVLVNGLSKKGELEQA 269
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG + YN ++ G+
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGF 295
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + TYN L+ LC L +M G+ P++ TYTIL++ +
Sbjct: 384 RDLVPTVITYNTLIHGLCMWGYLDAALRLKKEM-TDQGLFPDIFTYTILVNGCFKLGYVS 442
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + G KPD F YNT + G
Sbjct: 443 MARGFFNEMLSKGLKPDRFAYNTRIVG 469
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDIFTY LV K ++ F ++M S G+KP+ Y I +
Sbjct: 419 QGLFPDIFTYTILVNGCFKLGYVSMARGFFNEM-LSKGLKPDRFAYNTRIVGEMKIADTS 477
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + +GF PD YN +
Sbjct: 478 VAFSMQEEMLAAGFPPDVITYNVFVHA 504
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV L K L +++M S G+ + TY LI+ C EA
Sbjct: 248 PNDVTYNVLVNGLSKKGELEQAKGLIEEMLNS-GLNVSAYTYNPLINGFCQKGLFVEAFD 306
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + P YNT+M G
Sbjct: 307 LVEEMVNRRAFPTLSTYNTLMYG 329
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTV-YNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TYN L+ LCK +T V F D +++ P++V++ L+ C T + EA
Sbjct: 318 PTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKF--TPDIVSFNSLLYGYCRTGCISEAF 375
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L L P YNT++ G
Sbjct: 376 LLFDELKCRDLVPTVITYNTLIHG 399
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD TY ++ K L ++M S G+ P++VTYT+LI +
Sbjct: 521 MVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEM-LSKGVAPSVVTYTVLIHAHAAKQ 579
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A S + + + YN I+ G
Sbjct: 580 MLDLAFMYFSKMLEKSVPANVITYNAIING 609
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TYN L+ C+ ++ V++M P L TY L+ +C + S
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAF-PTLSTYNTLMYGLCKWVQVTGVRLRFS 344
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ S F PD +N+++ GY
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGY 365
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+Q+ PD+ TYN L+ C CK + + F+ +M+A+ G+KPN+VTY+ ID
Sbjct: 113 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKAN-GLKPNVVTYSTFIDAF 171
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C L+EA++ + P+ F Y +++
Sbjct: 172 CKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 203
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ FTY L+ CK +L V+++ + GIK N+VTYT L+D +C ++EA
Sbjct: 192 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA-GIKLNVVTYTALLDGLCEEGRMKEA 250
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ ++G P+ Y ++ G+
Sbjct: 251 EEVFRAMLNAGVAPNQETYTALVHGF 276
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY LV K + + + + +M+ IKP+L+ Y ++ +CN L EA
Sbjct: 264 PNQETYTALVHGFIKAKEMEYAKDILKEMKEKC-IKPDLLLYGTILWGLCNESRLEEAKL 322
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG + +Y T+M Y
Sbjct: 323 LIGEIKESGINTNAVIYTTLMDAY 346
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+FTYN ++ LCK L + QM+ + G P++VTY LID L E + +
Sbjct: 56 VFTYNIMIDYLCKEGDLEMARSLFTQMKEA-GFTPDIVTYNSLIDGHGKLGLLDECICIF 114
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ D+ PD YN ++ +
Sbjct: 115 EQMKDADCDPDVITYNALINCF 136
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
F M A+ GIK ++ TY I+ID +C +L A L + + ++GF PD YN+++ G+
Sbjct: 43 FFKDMGAA-GIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 101
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ K L +QM+ + P+++TY LI+ C + + +A
Sbjct: 89 PDIVTYNSLIDGHGKLGLLDECICIFEQMKDA-DCDPDVITYNALINCFCKFERMPKAFE 147
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G KP+ Y+T + +
Sbjct: 148 FLHEMKANGLKPNVVTYSTFIDAF 171
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
LV LCK D+M G+ P+ + YT LID NL+EA+ L + +
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDK-GMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEI 423
Query: 76 GFKPDCFVYNTIMKG 90
G + D Y ++ G
Sbjct: 424 GMELDLHAYTALIWG 438
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD Y L+ K +L N D+M +G++ +L YT LI + ++
Sbjct: 385 MLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRM-IEIGMELDLHAYTALIWGLSHSG 443
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A L+ + G PD VY ++K Y
Sbjct: 444 QVQKARNLLDEMIGKGVLPDEVVYMCLIKKY 474
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN L+ CLCK ++ + V M S G+ P++VT IL+D +C +K L +A+
Sbjct: 358 PNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRS-GLTPDIVTCCILLDGLCKSKRLDQAIL 416
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + L +SG PD + Y ++ G
Sbjct: 417 LFNQLVESGLTPDVWSYTILIHG 439
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P I TY+ L+ LC+ ++ + +++M G P+ +TY+IL+D + ++L
Sbjct: 458 LKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVK-GPLPDTITYSILLDALWKKQHL 516
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + + G +PD Y ++ GY
Sbjct: 517 DEAVFLFNQMIKRGLEPDVMCYTIMIDGY 545
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L ++ + L+ LCK L D+M + G +PN+VT T L+ C
Sbjct: 246 MIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEM-VNRGYEPNIVTCTALMGGYCLKG 304
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A L A+ + GFK D + YN + GY
Sbjct: 305 NVDMARELFDAIGEWGFKRDVWTYNVFIHGY 335
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY L++ LC + VD+M G+ ++ +T+LID +C L EA
Sbjct: 218 PNEFTYGSLIRGLCGVGKFLEGFGLVDEM-IRRGLDVSVYVFTVLIDGLCKNGMLVEARE 276
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G++P+ +M GY
Sbjct: 277 MFDEMVNRGYEPNIVTCTALMGGY 300
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++TYN + CK + D+M G+ PN+VTY LID +C + A +
Sbjct: 324 DVWTYNVFIHGYCKVGRVRDAVRVFDEM-CREGVVPNIVTYNSLIDCLCKAGEVSGAWEI 382
Query: 69 VSALSDSGFKPD 80
V + SG PD
Sbjct: 383 VKTMHRSGLTPD 394
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI T L+ LCK + L +Q+ S G+ P++ +YTILI C ++ + EA
Sbjct: 391 LTPDIVTCCILLDGLCKSKRLDQAILLFNQLVES-GLTPDVWSYTILIHGCCTSRRMGEA 449
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M L+ + P Y+ ++ G
Sbjct: 450 MNLLRDMHLKNLVPHIVTYSCLIDG 474
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY+ L+ L K + L +QM G++P+++ YTI+ID C ++ + EA+
Sbjct: 498 PDTITYSILLDALWKKQHLDEAVFLFNQM-IKRGLEPDVMCYTIMIDGYCKSERIDEAIN 556
Query: 68 LVSALSDSGFKPDCFVYNTI 87
L + PD Y +
Sbjct: 557 LFREMHMKNLVPDIVTYTIL 576
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ Y+ ++ CLC+ + + F ++M + G+ PN TY LI +C E L
Sbjct: 184 NVVMYSIVIDCLCRNGFVDEGFEFYNEMMGN-GVCPNEFTYGSLIRGLCGVGKFLEGFGL 242
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + G +V+ ++ G
Sbjct: 243 VDEMIRRGLDVSVYVFTVLIDG 264
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD+ Y ++ CK + N +M + P++VTYTIL + V +
Sbjct: 526 MIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMK-NLVPDIVTYTILFNAVFKSG 584
Query: 61 NLREAMRLVSALSDSGFKPDCFVY 84
+ + V+ + D P Y
Sbjct: 585 SNSYEWKFVNVIRDINPPPRVLKY 608
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRA-------SLGIKPNLVTYTILIDNVCNTKNLRE 64
+Y L+ LC+ + N + + +K N+V Y+I+ID +C + E
Sbjct: 144 SYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDE 203
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + +G P+ F Y ++++G
Sbjct: 204 GFEFYNEMMGNGVCPNEFTYGSLIRG 229
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K +P ++ TYN ++ LC R + Y + D+M GI PN +YTILI+ CN
Sbjct: 591 MLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEK-GILPNKFSYTILINESCNMG 649
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+RL + D +PD F ++ +K
Sbjct: 650 YWEEALRLYREMLDRKIQPDSFTHSVFLK 678
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD F YN + K + ++ ++M A+ G P+++TY + + +C
Sbjct: 451 MLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAA-GFPPDVITYNVFVHALCQQG 509
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N EA L+ + G PD Y +I+ G+
Sbjct: 510 NFEEACDLLENMVSDGLIPDHVTYTSIINGF 540
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD+ TYN V LC+ + + ++ M S G+ P+ VTYT +I+ +LR+A
Sbjct: 491 FPPDVITYNVFVHALCQQGNFEEACDLLENM-VSDGLIPDHVTYTSIINGFVKNGHLRKA 549
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P Y ++ +
Sbjct: 550 REVFNEMLSKGVAPSVVTYTVLIHAH 575
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PDI ++N L+ C+ ++ + D+++ + P ++TY LI +C L
Sbjct: 350 KFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCR-DLVPTVITYNTLIHGLCMWGYLDA 408
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL ++D G PD F Y ++ G
Sbjct: 409 ALRLKKEMTDQGLFPDIFTYTILVNG 434
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L PD+ N +++ L L+ N V M GIKP +VTY ++D+ C
Sbjct: 171 MIRNGLLPDVKNCNRILRVLRDENLLSKAKN-VYGMMEQFGIKPTVVTYNTMLDSYCKEG 229
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L+S + + G P+ YN ++ G
Sbjct: 230 RVDQALELLSEMQERGCYPNDVTYNVLVNG 259
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + TYN ++ CK + + +M+ G PN VTY +L++ + L +A
Sbjct: 211 IKPTVVTYNTMLDSYCKEGRVDQALELLSEMQER-GCYPNDVTYNVLVNGLSKKGELEQA 269
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG + YN ++ G+
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGF 295
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + TYN L+ LC L +M G+ P++ TYTIL++ +
Sbjct: 384 RDLVPTVITYNTLIHGLCMWGYLDAALRLKKEM-TDQGLFPDIFTYTILVNGCFKLGYVS 442
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + G KPD F YNT + G
Sbjct: 443 MARGFFNEMLSKGLKPDRFAYNTRIVG 469
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDIFTY LV K ++ F ++M S G+KP+ Y I +
Sbjct: 419 QGLFPDIFTYTILVNGCFKLGYVSMARGFFNEM-LSKGLKPDRFAYNTRIVGEMKIADTS 477
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + +GF PD YN +
Sbjct: 478 VAFSMQEEMLAAGFPPDVITYNVFVHA 504
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV L K L +++M S G+ + TY LI+ C EA
Sbjct: 248 PNDVTYNVLVNGLSKKGELEQAKGLIEEMLNS-GLNVSAYTYNPLINGFCQKGLFVEAFD 306
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + P YNT+M G
Sbjct: 307 LVEEMVNRRAFPTLSTYNTLMYG 329
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTV-YNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TYN L+ LCK +T V F D +++ P++V++ L+ C T + EA
Sbjct: 318 PTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKF--TPDIVSFNSLLYGYCRTGCISEAF 375
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L L P YNT++ G
Sbjct: 376 LLFDELKCRDLVPTVITYNTLIHG 399
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD TY ++ K L ++M S G+ P++VTYT+LI +
Sbjct: 521 MVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEM-LSKGVAPSVVTYTVLIHAHAAKQ 579
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A S + + + YN I+ G
Sbjct: 580 MLDLAFMYFSKMLEKSVPANVITYNAIING 609
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TYN L+ C+ ++ V++M P L TY L+ +C + S
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAF-PTLSTYNTLMYGLCKWVQVTGVRLRFS 344
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ S F PD +N+++ GY
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGY 365
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN L+ C+ L N D+M+ + G+KP++ TY L+ C + EA++
Sbjct: 399 PDVFTYNNLIHWHCQAHKLREALNLFDRMKKA-GVKPSINTYNSLLMGYCKKGCMDEAVK 457
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S + GFKP+ Y T+M+GY
Sbjct: 458 LYSEMPMEGFKPNVVTYITLMRGY 481
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K LPP+I TY + C+ ++ +R G++P++V Y LI+ C N+
Sbjct: 570 KGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRR-GLQPDIVAYNALINGFCQEGNMS 628
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A++L+ L G P+ VYN+++ GY
Sbjct: 629 HALQLLVILLKDGLAPNTVVYNSLITGY 656
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ K + + + QMR G+ PN++TYT ID C T A++
Sbjct: 539 PTMMTYNSIINGFVKAGMMGSAFTVYQQMREK-GLPPNIITYTSFIDGYCRTGCSDMALK 597
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G +PD YN ++ G+
Sbjct: 598 MLNDVRRRGLQPDIVAYNALINGF 621
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD FT+ L LC+ + +++MR L ++PN+ Y +LI+
Sbjct: 707 MMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMR-RLDVRPNVFIYNMLINGYLRDC 765
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L+EA RL + + G +PD Y+ ++
Sbjct: 766 KLQEAFRLHDEMLNMGIQPDDTTYDILV 793
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F ++P PD Y + LCK + +M+ +G TY ++D +
Sbjct: 214 LFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMK-EVGFDTCDFTYRTMVDVL 272
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
T + EA+R+ + D+G K D V T+M+GY
Sbjct: 273 VKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGY 307
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
++ ++P P++ TY L++ + Y +D+M+ + G+ N TY +LI+ +
Sbjct: 458 LYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQN-GVSCNDYTYNVLINGI 516
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + E ++ + GF P YN+I+ G+
Sbjct: 517 CMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGF 551
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L P+ YN L+ + V F + M GI + TYT LID
Sbjct: 637 LLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKG-GIVADTSTYTTLIDGFSKDG 695
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A+ L S + G+ PD F + + G
Sbjct: 696 NVAFALELYSEMMAKGYIPDAFTFTALTHG 725
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ K ++ +M A G P+ T+T L +C + ++ A +L
Sbjct: 680 DTSTYTTLIDGFSKDGNVAFALELYSEMMAK-GYIPDAFTFTALTHGLCRSGDIDGAKKL 738
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +P+ F+YN ++ GY
Sbjct: 739 LEEMRRLDVRPNVFIYNMLINGY 761
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI YN L+ C+ +++ + + G+ PN V Y LI N ++
Sbjct: 605 RGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKD-GLAPNTVVYNSLITGYKNLNMMK 663
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E + ++ G D Y T++ G+
Sbjct: 664 EVSKFYESMIKGGIVADTSTYTTLIDGF 691
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREA 65
PD+ TYN LV LC+ +T YN V M + S+ + PN+VTYT LI C + + +A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + + G K + YNT++KG
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKG 336
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K D+M ++ G+ P+ T+ ILI C + +
Sbjct: 180 VSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDG 239
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R+ + LS G +PD YNT++ G
Sbjct: 240 FRIFNDLSRFGCEPDVVTYNTLVDG 264
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L++ C R + ++M + G+K N +TY LI +C + +
Sbjct: 288 LNPNVVTYTTLIRGYCAKREIEKALAVFEEM-VNQGLKANNITYNTLIKGLCEARKFEKI 346
Query: 66 MRLVSALSDSG-FKPDCFVYNTIM 88
++ + G F PD +NT+M
Sbjct: 347 KDILEGTAGDGTFSPDTCTFNTLM 370
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 45/89 (50%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L + TYN L+K LC+ R + + ++ P+ T+ L+ C+
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAG 377
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
NL +A+++ +S+ +PD Y+ +++
Sbjct: 378 NLDDALKVFERMSELKIQPDSATYSALVR 406
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+N L++ C + + + + + G +P++VTY L+D +C + A
Sbjct: 218 PDTFTFNILIRGFCMNGMVDDGFRIFNDL-SRFGCEPDVVTYNTLVDGLCRAGKVTVAYN 276
Query: 68 LVSALSDSG--FKPDCFVYNTIMKGY 91
+V + P+ Y T+++GY
Sbjct: 277 VVKGMGKKSVDLNPNVVTYTTLIRGY 302
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ C C +L ++M + L I+P+ TY+ L+ ++C + +A
Sbjct: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERM-SELKIQPDSATYSALVRSLCQGGHYEKAED 419
Query: 68 LVSA-------LSDSGFKPDCFVYNTIMK 89
L+ LS G KP YN I K
Sbjct: 420 LLDKLLERKILLSGDGCKPLVAAYNPIFK 448
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + PDI TYN L+ LCK + N D + G+ PN VTY ++D C +K
Sbjct: 661 MCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR-GLTPNCVTYAAMVDGYCKSK 719
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N A +L+ + G PD F+YN I+
Sbjct: 720 NPTAAFQLLEEMLLRGVPPDAFIYNVIL 747
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ FTYN L+ CK ++ +++M GI P++VTY ILID +C +
Sbjct: 629 KGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK-GINPDIVTYNILIDGLCKAGEIE 687
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + G P+C Y ++ GY
Sbjct: 688 RAKNLFDDIEGRGLTPNCVTYAAMVDGY 715
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY ++ CK ++ + +M G PNLVTY ++I +C + L EA+
Sbjct: 213 PDVYTYTNMISAHCKVGNVKDAKRVLLEM-GEKGCSPNLVTYNVIIGGLCRARLLDEAIE 271
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L ++ D G PD + Y+ ++ G+
Sbjct: 272 LKRSMVDKGLVPDLYTYDILINGF 295
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TYN ++ LC+ R L M G+ P+L TY ILI+ C K R
Sbjct: 244 KGCSPNLVTYNVIIGGLCRARLLDEAIELKRSM-VDKGLVPDLYTYDILINGFCMEKRSR 302
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + D G KP+ YN ++ G+
Sbjct: 303 EAKLMLLEMIDVGLKPEPITYNALIDGF 330
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P + TY+ ++ LC+C +L + +M + G+KPN V YT L+ +
Sbjct: 419 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN-GLKPNAVVYTTLMTAHAKEGRVE 477
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E+ ++ + + G PD F YN+++ G+
Sbjct: 478 ESRMILERMREQGILPDVFCYNSLIIGF 505
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TY+ L++ C+ +++ + +D+M+ + P ++TY+++I+ +C NL+
Sbjct: 384 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKR-KLAPTVLTYSVIINGLCRCGNLQ 442
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G KP+ VY T+M +
Sbjct: 443 GTNAILREMVMNGLKPNAVVYTTLMTAH 470
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ + + + D+M A GI+ NL+ + L++ VC + +A
Sbjct: 316 LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVAC-GIEANLIIWNTLLNGVCKAGKMEKA 374
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ + + G +PD Y+ +++G+
Sbjct: 375 LEIMQEMMEKGVEPDSQTYSLLIEGH 400
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC-KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ K L PD++TY+ L+ C + RS ++ + +G+KP +TY LID
Sbjct: 276 MVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMI--DVGLKPEPITYNALIDGFMRQ 333
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +A R+ + G + + ++NT++ G
Sbjct: 334 GDIEQAFRIKDEMVACGIEANLIIWNTLLNG 364
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
++N L++ CK L + +++M I PN VTYT LID+ C + EA RL
Sbjct: 776 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFI-PNHVTYTSLIDHNCKAGMMGEAKRLWLE 834
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ + P Y +++ GY
Sbjct: 835 MQERNVMPTAKTYTSLLHGY 854
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLT---TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
P++ Y L++ CK ++T +V+ F+ R + ++ TY++LI + + E
Sbjct: 563 PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR----VLQDVQTYSVLIHGLSRNGKMHE 618
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A + S L + G P+ F YN+++ G
Sbjct: 619 AFGIFSELQEKGLLPNAFTYNSLISG 644
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F YN L+ CK + + ++ +M ++PN TY ID + A R
Sbjct: 493 PDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-LRPNAHTYGAFIDGYSKAGEMEIADR 551
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ +Y +++G+
Sbjct: 552 YFNEMLSCGVLPNVGIYTALIEGH 575
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ +N L+ +CK + + +M G++P+ TY++LI+ C +N+ A L
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEK-GVEPDSQTYSLLIEGHCRGQNMARAFEL 412
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + P Y+ I+ G
Sbjct: 413 LDEMKKRKLAPTVLTYSVIING 434
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + + N L+ L K + + D M A + P++ TYT +I C N+++
Sbjct: 175 EFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAH-KVLPDVYTYTNMISAHCKVGNVKD 233
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A R++ + + G P+ YN I+ G
Sbjct: 234 AKRVLLEMGEKGCSPNLVTYNVIIGG 259
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD F YN ++ CK + +M G + V++ LI+ C +
Sbjct: 731 MLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK-GFA-STVSFNTLIEGYCKSG 788
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L+EA L+ + + F P+ Y +++
Sbjct: 789 KLQEANHLLEEMIEKQFIPNHVTYTSLI 816
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY ++ C+ ++ D++ G+ ++ Y LI +C +
Sbjct: 870 MVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVK-GMPMSVAAYDALIQALCKKE 928
Query: 61 NLREAMRLVSALSDSGFK---PDCFVYNTIMKGY 91
E ++L++ + +SGF+ P C V I +G+
Sbjct: 929 EFFEVLKLLNEIGESGFRLGLPTCSV---IARGF 959
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I KQ P+ TY L+ CK + +M+ + P TYT L+ N
Sbjct: 800 MIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQER-NVMPTAKTYTSLLHGYHNIG 858
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ E L + G +PD Y ++ Y
Sbjct: 859 NMSEVSALFEEMVAKGIEPDKMTYYVMIDAY 889
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P TY L+ +++ V ++M A GI+P+ +TY ++ID C N+
Sbjct: 838 RNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAK-GIEPDKMTYYVMIDAYCREGNVM 896
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + G Y+ +++
Sbjct: 897 EACKLKDEILVKGMPMSVAAYDALIQA 923
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ Y L+ LCK + +D M G++PN+VTY +LI+ +C +++
Sbjct: 214 KGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMM-VRRGLEPNVVTYNVLINCMCKEGSVK 272
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++ +S+ G PD YNT++KG
Sbjct: 273 EAIGVLKKMSEKGVAPDVVTYNTLIKG 299
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y L++ LC R + MR S G++ ++VTY LI +C+ + +A+
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMR-SAGVRADVVTYGTLIRGLCDAAEVDKAVE 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG +P+ VY+++++GY
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGY 195
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N +++ LC + + V M G NLVTY +LI + +R+AM
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQ-VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAME 383
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +PD F Y+ ++KG+
Sbjct: 384 LMDEMTSLGLEPDSFTYSILIKGF 407
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TYN L+ C+CK S+ + +M + G+ P++VTY LI + +
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM-SEKGVAPDVVTYNTLIKGLSDVL 304
Query: 61 NLREAMRLVSAL--SDSGFKPDCFVYNTIMKG 90
+ EAM L+ + + KP+ +N++++G
Sbjct: 305 EMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQG 336
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ L + + +D+M SLG++P+ TY+ILI C + A L
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEM-TSLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419
Query: 69 VSALSDSGFKPDCFVY 84
+S + D G +P+ F Y
Sbjct: 420 LSTMRDRGIEPELFHY 435
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P D+ Y+ ++ CK L T + + G+ P+ VTY+I+I+ + ++ A
Sbjct: 462 FPLDVVAYSTMIHGACKAGDLKTAKELLKSI-VDEGLTPDAVTYSIVINMFAKSGDMEAA 520
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ ++ SGF PD V++++++GY
Sbjct: 521 NGVLKQMTASGFLPDVAVFDSLIQGY 546
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
K + PD+ TYN L+K L + +++M R +KPN+VT+ +I +C+ +
Sbjct: 284 KGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRM 343
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R+A ++ + + ++G + YN ++ G
Sbjct: 344 RQAFQVRAMMEETGCMVNLVTYNLLIGG 371
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ L+K CK + + + MR GI+P L Y L+ +C + A
Sbjct: 393 LEPDSFTYSILIKGFCKMWQVDRAEDLLSTMR-DRGIEPELFHYIPLLVAMCEQGMMERA 451
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + + D+ F D Y+T++ G
Sbjct: 452 RNLFNEM-DNNFPLDVVAYSTMIHG 475
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L++ LC + + +M S GI+PN+V Y+ L+ C + + ++
Sbjct: 149 DVVTYGTLIRGLCDAAEVDKAVELMGEMCES-GIEPNVVVYSSLLQGYCKSGRWEDVGKV 207
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+S+ G +PD +Y ++
Sbjct: 208 FVEMSEKGIEPDVVMYTGLI 227
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
D +YN ++ LC+ + M +PN V+YT+L+ +C + +A+
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G + D Y T+++G
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRG 159
>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
Length = 346
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ Y L+ LCK + +D M G++PN+VTY +LI+ +C +++
Sbjct: 214 KGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMM-VRRGLEPNVVTYNVLINCMCKEGSVK 272
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++ +S+ G PD YNT++KG
Sbjct: 273 EAIGVLKKMSEKGVAPDVVTYNTLIKG 299
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y L++ LC R + MR S G++ ++VTY LI +C+ + +A+
Sbjct: 113 PNAVSYTVLMRALCADRRADQAVGLLRSMR-SAGVRADVVTYGTLIRGLCDAAEVDKAVE 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG +P+ VY+++++GY
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGY 195
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TYN L+ C+CK S+ + +M + G+ P++VTY LI + +
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM-SEKGVAPDVVTYNTLIKGLSDVL 304
Query: 61 NLREAMRLVSAL 72
+ EAM L+ +
Sbjct: 305 EMDEAMWLLEEM 316
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L++ LC + + +M S GI+PN+V Y+ L+ C + + ++
Sbjct: 149 DVVTYGTLIRGLCDAAEVDKAVELMGEMCES-GIEPNVVVYSSLLQGYCKSGRWEDVGKV 207
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+S+ G +PD +Y ++
Sbjct: 208 FVEMSEKGIEPDVVMYTGLI 227
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
D +YN ++ LC+ + M +PN V+YT+L+ +C + +A+
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G + D Y T+++G
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRG 159
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + PDI TYN L+ LCK + N D + G+ PN VTY ++D C +K
Sbjct: 652 MCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR-GLTPNCVTYAAMVDGYCKSK 710
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N A +L+ + G PD F+YN I+
Sbjct: 711 NPTAAFQLLEEMLLRGVPPDAFIYNVIL 738
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ FTYN L+ CK ++ +++M GI P++VTY ILID +C +
Sbjct: 620 KGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK-GINPDIVTYNILIDGLCKAGEIE 678
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + G P+C Y ++ GY
Sbjct: 679 RAKNLFDDIEGRGLTPNCVTYAAMVDGY 706
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P + TY+ ++ LC+C +L + +M + G+KPN V YT L+ +
Sbjct: 410 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN-GLKPNAVVYTTLMTAHAKEGRVE 468
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E+ ++ + + G PD F YN+++ G+
Sbjct: 469 ESRMILERMREQGILPDVFCYNSLIIGF 496
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TY+ L++ C+ +++ + +D+M+ + P ++TY+++I+ +C NL+
Sbjct: 375 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKR-KLAPTVLTYSVIINGLCRCGNLQ 433
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G KP+ VY T+M +
Sbjct: 434 GTNAILREMVMNGLKPNAVVYTTLMTAH 461
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASL--------------GIKPNLVTYTI 51
PD++TY ++ CK ++ + +M +A L G+ P+L TY I
Sbjct: 222 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDI 281
Query: 52 LIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LI+ C K REA ++ + D G KP+ YN ++ G+
Sbjct: 282 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGF 321
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ + + + D+M A GI+ NL+ + L++ VC + +A
Sbjct: 307 LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVAC-GIEANLIIWNTLLNGVCKAGKMEKA 365
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ + + G +PD Y+ +++G+
Sbjct: 366 LEIMQEMMEKGVEPDSQTYSLLIEGH 391
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC-KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ K L PD++TY+ L+ C + RS ++ + +G+KP +TY LID
Sbjct: 267 MVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMI--DVGLKPEPITYNALIDGFMRQ 324
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +A R+ + G + + ++NT++ G
Sbjct: 325 GDIEQAFRIKDEMVACGIEANLIIWNTLLNG 355
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
++N L++ CK L + +++M I PN VTYT LID+ C + EA RL
Sbjct: 767 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFI-PNHVTYTSLIDHNCKAGMMGEAKRLWLE 825
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ + P Y +++ GY
Sbjct: 826 MQERNVMPTAKTYTSLLHGY 845
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLT---TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
P++ Y L++ CK ++T +V+ F+ R + ++ TY++LI + + E
Sbjct: 554 PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR----VLQDVQTYSVLIHGLSRNGKMHE 609
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A + S L + G P+ F YN+++ G
Sbjct: 610 AFGIFSELQEKGLLPNAFTYNSLISG 635
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F YN L+ CK + + ++ +M ++PN TY ID + A R
Sbjct: 484 PDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-LRPNAHTYGAFIDGYSKAGEMEIADR 542
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ +Y +++G+
Sbjct: 543 YFNEMLSCGVLPNVGIYTALIEGH 566
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ +N L+ +CK + + +M G++P+ TY++LI+ C +N+ A L
Sbjct: 345 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEK-GVEPDSQTYSLLIEGHCRGQNMARAFEL 403
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + P Y+ I+ G
Sbjct: 404 LDEMKKRKLAPTVLTYSVIING 425
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD F YN ++ CK + +M G + V++ LI+ C +
Sbjct: 722 MLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK-GFA-STVSFNTLIEGYCKSG 779
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L+EA L+ + + F P+ Y +++
Sbjct: 780 KLQEANHLLEEMIEKQFIPNHVTYTSLI 807
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I KQ P+ TY L+ CK + +M+ + P TYT L+ N
Sbjct: 791 MIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQER-NVMPTAKTYTSLLHGYHNIG 849
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ E L + G +PD Y ++ Y
Sbjct: 850 NMSEVSALFEEMVAKGIEPDKMTYYVMIDAY 880
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+Q+ PD+ TYN L+ C CK + + F+ +M+A+ G+KPN+VTY+ ID
Sbjct: 312 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKAN-GLKPNVVTYSTFIDAF 370
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C L+EA++ + P+ F Y +++
Sbjct: 371 CKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 402
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ FTY L+ CK +L V+++ + GIK N+VTYT L+D +C ++EA
Sbjct: 391 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA-GIKLNVVTYTALLDGLCEEGRMKEA 449
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ ++G P+ Y ++ G+
Sbjct: 450 EEVFRAMLNAGVAPNQETYTALVHGF 475
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY LV K + + + + +M+ IKP+L+ Y ++ +CN L EA
Sbjct: 463 PNQETYTALVHGFIKAKEMEYAKDILKEMKEKC-IKPDLLLYGTILWGLCNESRLEEAKL 521
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG + +Y T+M Y
Sbjct: 522 LIGEIKESGINTNAVIYTTLMDAY 545
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+FTYN ++ LCK L + QM+ + G P++VTY LID L E + +
Sbjct: 255 VFTYNIMIDYLCKEGDLEMARSLFTQMKEA-GFTPDIVTYNSLIDGHGKLGLLDECICIF 313
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ D+ PD YN ++ +
Sbjct: 314 EQMKDADCDPDVITYNALINCF 335
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
F M A+ GIK ++ TY I+ID +C +L A L + + ++GF PD YN+++ G+
Sbjct: 242 FFKDMGAA-GIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L+ LCK + + +M + +G++PN+ YT L+D +C A +L
Sbjct: 572 TYCALIDGLCKSGLVQEAMHHFGRM-SEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDE 630
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ D G PD Y ++ G
Sbjct: 631 MLDKGMMPDKIAYTALIDG 649
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y LV LCK D+M G+ P+ + YT LID NL+EA
Sbjct: 601 LQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDK-GMMPDKIAYTALIDGNMKHGNLQEA 659
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + + G + D Y ++ G
Sbjct: 660 LNLRDRMIEIGMELDLHAYTALIWG 684
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ K L +QM+ + P+++TY LI+ C + + +A
Sbjct: 288 PDIVTYNSLIDGHGKLGLLDECICIFEQMKDA-DCDPDVITYNALINCFCKFERMPKAFE 346
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G KP+ Y+T + +
Sbjct: 347 FLHEMKANGLKPNVVTYSTFIDAF 370
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y L+ K T +++M LG+ VTY LID +C + ++EAM +
Sbjct: 538 YTTLMDAYFKSGQATEALTLLEEM-LDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRM 596
Query: 73 SDSGFKPDCFVYNTIMKG 90
S+ G +P+ VY ++ G
Sbjct: 597 SEIGLQPNVAVYTALVDG 614
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD Y L+ K +L N D+M +G++ +L YT LI + ++
Sbjct: 631 MLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRM-IEIGMELDLHAYTALIWGLSHSG 689
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A L+ + G PD VY ++K Y
Sbjct: 690 QVQKARNLLDEMIGKGVLPDEVVYMCLIKKY 720
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ Y ++ LC L + +++ S GI N V YT L+D +
Sbjct: 494 KCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKES-GINTNAVIYTTLMDAYFKSGQAT 552
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ + D G Y ++ G
Sbjct: 553 EALTLLEEMLDLGLIATEVTYCALIDG 579
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREA 65
PD+ TYN LV LC+ +T YN V M + S+ + PN+VTYT LI C + + +A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + + G K + YNT++KG
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKG 336
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K D+M ++ G+ P+ T+ ILI C + +
Sbjct: 180 VSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDG 239
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R+ + LS G +PD YNT++ G
Sbjct: 240 FRIFNDLSRFGCEPDVVTYNTLVDG 264
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L++ C R + ++M + G+K N +TY LI +C + +
Sbjct: 288 LNPNVVTYTTLIRGYCAKREIEKALAVFEEM-VNQGLKANNITYNTLIKGLCEARKFEKI 346
Query: 66 MRLVSALSDSG-FKPDCFVYNTIM 88
++ + G F PD +NT+M
Sbjct: 347 KDILEGTAGDGTFSPDTCTFNTLM 370
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 45/89 (50%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L + TYN L+K LC+ R + + ++ P+ T+ L+ C+
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAG 377
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
NL +A+++ +S+ +PD Y+ +++
Sbjct: 378 NLDDALKVFERMSELKIQPDSATYSALVR 406
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+N L++ C + + + + + G +P++VTY L+D +C + A
Sbjct: 218 PDTFTFNILIRGFCMNGMVDDGFRIFNDL-SRFGCEPDVVTYNTLVDGLCRAGKVTVAYN 276
Query: 68 LVSALSDSG--FKPDCFVYNTIMKGY 91
+V + P+ Y T+++GY
Sbjct: 277 VVKGMGKKSVDLNPNVVTYTTLIRGY 302
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ C C +L ++M + L I+P+ TY+ L+ ++C + +A
Sbjct: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERM-SELKIQPDSATYSALVRSLCQGGHYEKAED 419
Query: 68 LVSA-------LSDSGFKPDCFVYNTIMK 89
L+ LS G KP YN I K
Sbjct: 420 LLDKLLERKILLSGDGCKPLVAAYNPIFK 448
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ Y L+ LCK + +D M G++PN+VTY +LI+ +C +++
Sbjct: 214 KGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMM-VRRGLEPNVVTYNVLINCMCKEGSVK 272
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++ +S+ G PD YNT++KG
Sbjct: 273 EAIGVLKKMSEKGVAPDVVTYNTLIKG 299
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N +++ LC + + V M G NLVTY +LI + +R+AM
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQ-VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAME 383
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +PD F Y+ ++KG+
Sbjct: 384 LMDEMTSLGLEPDSFTYSILIKGF 407
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y L++ LC R + MR S G++ ++VTY LI +C+ + +A+
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMR-SAGVRADVVTYGTLIRGLCDAAEVDKAVE 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG +P+ VY+++++GY
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGY 195
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TYN L+ C+CK S+ + +M + G+ P++VTY LI + +
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM-SEKGVAPDVVTYNTLIKGLSDVL 304
Query: 61 NLREAMRLVSAL--SDSGFKPDCFVYNTIMKG 90
+ EAM L+ + + KP+ +N++++G
Sbjct: 305 EMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQG 336
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ L + + +D+M SLG++P+ TY+ILI C + A L
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEM-TSLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419
Query: 69 VSALSDSGFKPDCFVY 84
+S + D G +P+ F Y
Sbjct: 420 LSTMRDRGIEPELFHY 435
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P D+ Y+ ++ CK L T + + G+ P+ VTY+I+I+ + ++ A
Sbjct: 462 FPLDVVAYSTMIHGACKAGDLKTAKELLKSI-VDEGLTPDAVTYSIVINMFAKSGDMEAA 520
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ ++ SGF PD V++++++GY
Sbjct: 521 NGVLKQMTASGFLPDVAVFDSLIQGY 546
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
K + PD+ TYN L+K L + +++M R +KPN+VT+ +I +C+ +
Sbjct: 284 KGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRM 343
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R+A ++ + + ++G + YN ++ G
Sbjct: 344 RQAFQVRAMMEETGCMVNLVTYNLLIGG 371
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ L+K CK + + + MR GI+P L Y L+ +C + A
Sbjct: 393 LEPDSFTYSILIKGFCKMWQVDRAEDLLSTMR-DRGIEPELFHYIPLLVAMCEQGMMERA 451
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + + D+ F D Y+T++ G
Sbjct: 452 RNLFNEM-DNNFPLDVVAYSTMIHG 475
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L++ LC + + +M S GI+PN+V Y+ L+ C + + ++
Sbjct: 149 DVVTYGTLIRGLCDAAEVDKAVELMGEMCES-GIEPNVVVYSSLLQGYCKSGRWEDVGKV 207
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+S+ G +PD +Y ++
Sbjct: 208 FVEMSEKGIEPDVVMYTGLI 227
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
D +YN ++ LC+ + M +PN V+YT+L+ +C + +A+
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G + D Y T+++G
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRG 159
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P I +YN L+K LCK + Y+FV +M KP+++T ++L+D +C K +
Sbjct: 495 KGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEK-EWKPDMITCSLLMDGLCQEKKIE 553
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L D GFKPD +YN +M G
Sbjct: 554 MALNLWQQALDKGFKPDITMYNILMHG 580
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+ PD+ T + L+ LC+ + + N Q G KP++ Y IL+ +C+
Sbjct: 527 MLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDK-GFKPDITMYNILMHGLCSVC 585
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A++L S + S P+ NT+M+G
Sbjct: 586 KLEDALQLYSHMKRSTCVPNLVTRNTLMEG 615
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI YN L+ LC L M+ S + PNLVT L++ + ++
Sbjct: 565 KGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCV-PNLVTRNTLMEGLYKVRDYE 623
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + G PD YN +KG
Sbjct: 624 KASEIWDCILKDGLHPDIISYNITIKG 650
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +YN L+ + +F + S+ + PNL TY ILI C + + +A+
Sbjct: 114 PGVRSYNTLLNAFVELNEWDRAESF-SRYFESMDVSPNLQTYNILIKISCKKQQIEKAIS 172
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + KPD F Y T++ G
Sbjct: 173 LLDWMWSQNLKPDVFSYGTLING 195
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ LCKC ++M + K ++ TY+ LI +C N+ A+R
Sbjct: 255 PNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREK-DMFTYSSLIHGLCEAGNIDGAVR 313
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +S D +N ++ G+
Sbjct: 314 VYKEIVESSLVVDAVTHNAMLNGF 337
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI +YN +K LC C ++ F++ + GI P VT+ IL+ N
Sbjct: 637 LHPDIISYNITIKGLCSCSRISDAIEFLNDA-LNRGILPTAVTWNILVRAAVN------- 688
Query: 66 MRLVSALSDSGFK 78
R S LS GF+
Sbjct: 689 FRTSSVLSACGFE 701
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ LCK L + G K + Y+ ++D +C + EA+
Sbjct: 394 PESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPG-KLDAYAYSSMVDGLCKEGRMDEAIS 452
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V+ + G+K D V N ++ G+
Sbjct: 453 IVNQMDKRGYKLDPHVCNPLINGF 476
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 39/82 (47%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L+ K +++ + PN+VTY I+I+ +C E++ +
Sbjct: 220 DVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEI 279
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + + D F Y++++ G
Sbjct: 280 WERMTKNEREKDMFTYSSLIHG 301
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ +YN L+K L + + + + ++ G +P TY +LI +C L +A+++
Sbjct: 361 VVSYNILIKGLFENGKVEEAIS-IWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIF 419
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
D K D + Y++++ G
Sbjct: 420 KEAEDGPGKLDAYAYSSMVDG 440
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T N L++ L K R D + G+ P++++Y I I +C+ + +A+
Sbjct: 604 PNLVTRNTLMEGLYKVRDYEKASEIWDCILKD-GLHPDIISYNITIKGLCSCSRISDAIE 662
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G P +N +++
Sbjct: 663 FLNDALNRGILPTAVTWNILVRA 685
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L PD+ +YN L+ + ++ + +++M + G+KPN VT+ I++ C + +
Sbjct: 343 KLLPDVVSYNTLINGCLEWSKISEAFKLLEEM-SEKGVKPNAVTHNIMVKWYCKEGKMDD 401
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ + +SGF PDC YNT++ GY
Sbjct: 402 ASNTITKMEESGFSPDCVTYNTLINGY 428
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TYN L+ LC + + D+M +L + P++V+Y LI+ + EA
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEME-NLKLLPDVVSYNTLINGCLEWSKISEA 367
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+ +S+ G KP+ +N ++K Y
Sbjct: 368 FKLLEEMSEKGVKPNAVTHNIMVKWY 393
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ T+N +VK CK + N + +M S G P+ VTY LI+ C N+
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEES-GFSPDCVTYNTLINGYCKAGNMG 435
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA R + + K D NTI++
Sbjct: 436 EAFRTMDEMGRKNMKMDSVTLNTILR 461
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ LCK L + + M+ S G+ PN TY IL+ C L+EA
Sbjct: 241 PDNVTYNTILDALCKKGRLGDARDLLMDMK-SRGLLPNRNTYNILVYGYCKMGWLKEAAN 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ + PD + YN ++ G
Sbjct: 300 VIELMTQNNLLPDVWTYNMLING 322
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TYN LV CK L N ++ M + + P++ TY +LI+ +CN +
Sbjct: 272 RGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQN-NLLPDVWTYNMLINGLCNEGRIE 330
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + + PD YNT++ G
Sbjct: 331 EAFKLRDEMENLKLLPDVVSYNTLING 357
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ P TYN ++ LC+C + ++++ S G+ P+ TY ++ C ++
Sbjct: 517 KEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES-GLLPDETTYNTILHGYCREGDVE 575
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + + ++ FKPD F N +++G
Sbjct: 576 KAFQFHNKMVENSFKPDVFTCNILLRG 602
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ CK ++ + +D+M +K + VT ++ +C K L EA +
Sbjct: 416 PDCVTYNTLINGYCKAGNMGEAFRTMDEM-GRKNMKMDSVTLNTILRTLCREKKLEEAYK 474
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S+ G+ D Y T++ GY
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGY 498
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD+FT N L++ LC L + S G + VTY LI ++C
Sbjct: 584 MVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTW-VSKGKAIDTVTYNTLITSLCKEG 642
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A L+S + + PD + YN I+
Sbjct: 643 RLDDAFNLLSEMEEKELGPDHYTYNAII 670
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ K ++ D+M+ I P+ VTY +I +C +A+
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEK-EIIPSTVTYNCIIGGLCQCGKTEQAISK 545
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ L +SG PD YNTI+ GY
Sbjct: 546 LNELLESGLLPDETTYNTILHGY 568
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+ LCK L +N + +M + P+ TY +I + ++ +REA
Sbjct: 627 DTVTYNTLITSLCKEGRLDDAFNLLSEMEEK-ELGPDHYTYNAIITALTDSGRIREAEEF 685
Query: 69 VSALSDSGFKP 79
+S + + G P
Sbjct: 686 MSKMLEKGXLP 696
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTV----YNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+L P++ T N L+ L + S +V F D ++ LGI PN+ T+ I+I C
Sbjct: 165 RLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIK--LGIVPNVNTFNIVIYGYCLEN 222
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++A+ ++ + PD YNTI+
Sbjct: 223 KFKDAVEFLNVMGKYNCSPDNVTYNTIL 250
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N ++ C F++ M P+ VTY ++D +C L +A
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVM-GKYNCSPDNVTYNTILDALCKKGRLGDARD 264
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G P+ YN ++ GY
Sbjct: 265 LLMDMKSRGLLPNRNTYNILVYGY 288
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L PD+ +YN L+ + ++ + +++M + G+KPN VT+ I++ C + +
Sbjct: 343 KLLPDVVSYNTLINGCLEWSKISEAFKLLEEM-SEKGVKPNAVTHNIMVKWYCKEGKMDD 401
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ + +SGF PDC YNT++ GY
Sbjct: 402 ASNTITKMEESGFSPDCVTYNTLINGY 428
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TYN L+ LC + + D+M +L + P++V+Y LI+ + EA
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEME-NLKLLPDVVSYNTLINGCLEWSKISEA 367
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+ +S+ G KP+ +N ++K Y
Sbjct: 368 FKLLEEMSEKGVKPNAVTHNIMVKWY 393
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ T+N +VK CK + N + +M S G P+ VTY LI+ C N+
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEES-GFSPDCVTYNTLINGYCKAGNMG 435
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA R + + K D NTI++
Sbjct: 436 EAFRTMDEMGRKNMKMDSVTLNTILR 461
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TYN LV CK L N ++ M + + P++ TY +LI+ +CN +
Sbjct: 272 RGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQN-NLLPDVWTYNMLINGLCNEGRIE 330
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + + PD YNT++ G
Sbjct: 331 EAFKLRDEMENLKLLPDVVSYNTLING 357
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ LCK L + + M+ S G+ PN TY IL+ C L+EA
Sbjct: 241 PDNVTYNTILDTLCKKGRLGDARDLLMDMK-SRGLLPNRNTYNILVYGYCKMGWLKEAAN 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ + PD + YN ++ G
Sbjct: 300 VIELMTQNNLLPDVWTYNMLING 322
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ P TYN ++ LC+C + ++++ S G+ P+ TY ++ C ++
Sbjct: 517 KEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES-GLLPDETTYNTILHGYCREGDVE 575
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + + ++ FKPD F N +++G
Sbjct: 576 KAFQFHNKMVENSFKPDVFTCNILLRG 602
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ CK ++ + +D+M +K + VT ++ +C K L EA +
Sbjct: 416 PDCVTYNTLINGYCKAGNMGEAFRTMDEM-GRKNMKMDSVTLNTILRTLCREKKLEEAYK 474
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S+ G+ D Y T++ GY
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGY 498
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD+FT N L++ LC L + S G + VTY LI ++C
Sbjct: 584 MVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTW-VSKGKAIDTVTYNTLITSLCKEG 642
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A L+S + + PD + YN I+
Sbjct: 643 RLDDAFNLLSEMEEKELGPDHYTYNAII 670
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+ LCK L +N + +M + P+ TY +I + ++ +REA
Sbjct: 627 DTVTYNTLITSLCKEGRLDDAFNLLSEMEEK-ELGPDHYTYNAIITALTDSGRIREAEEF 685
Query: 69 VSALSDSGFKPD 80
+S + + G PD
Sbjct: 686 MSKMLEKGNLPD 697
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ K ++ D+M+ I P+ VTY +I +C +A+
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEK-EIIPSTVTYNCIIGGLCQCGKTEQAISK 545
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ L +SG PD YNTI+ GY
Sbjct: 546 LNELLESGLLPDETTYNTILHGY 568
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N ++ C F++ M P+ VTY ++D +C L +A
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVM-GKYNCSPDNVTYNTILDTLCKKGRLGDARD 264
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G P+ YN ++ GY
Sbjct: 265 LLMDMKSRGLLPNRNTYNILVYGY 288
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTV----YNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+L P++ T N L+ L + S +V F D ++ LGI PN+ T+ I+I C
Sbjct: 165 RLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIK--LGIVPNVNTFNIVIYGYCLEN 222
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++A+ ++ + PD YNTI+
Sbjct: 223 KFKDAVEFLNVMGKYNCSPDNVTYNTIL 250
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY+ L+ LCK L D+M+ G++PN +T+T LID C ++ + AM
Sbjct: 291 PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR-GLRPNGITFTALIDGQCRSRRIDSAMN 349
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G KPD +YNT++ G
Sbjct: 350 TYHQMLTMGVKPDLVMYNTLLNG 372
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ LCK + VD+MR +G+KP+ +TYT LID C +L AM
Sbjct: 361 PDLVMYNTLLNGLCKVGDVNKARKLVDEMRM-VGMKPDKITYTTLIDGYCKEGDLESAME 419
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G D + ++ G+
Sbjct: 420 IRKGMNEEGVVLDNVAFTALISGF 443
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ T+ L+ C+ R + + N QM ++G+KP+LV Y L++ +C ++
Sbjct: 322 RGLRPNGITFTALIDGQCRSRRIDSAMNTYHQM-LTMGVKPDLVMYNTLLNGLCKVGDVN 380
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +LV + G KPD Y T++ GY
Sbjct: 381 KARKLVDEMRMVGMKPDKITYTTLIDGY 408
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PP + YN L+ CK S+ +++R G++P V++ LI+ +C ++NL E
Sbjct: 219 FPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKR-GLRPTTVSFNTLINGLCKSRNLDEG 277
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + ++ PD F Y+ ++ G
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHG 302
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD TY ++ CK ++ + + +M+ + G KP ++TY +L++ +C
Sbjct: 459 MVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQIN-GHKPGVITYNVLMNGLCKQG 517
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A L+ A+ + G PD YN +++G+
Sbjct: 518 QMKNANMLLEAMLNLGVTPDDITYNILLEGH 548
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P ++N L+ LCK R+L + M + I P++ TY++LI +C L
Sbjct: 252 RGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENR-IYPDVFTYSVLIHGLCKEGRLD 310
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +L + G +P+ + ++ G
Sbjct: 311 VAEQLFDEMQQRGLRPNGITFTALIDG 337
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ LCK + ++ M +LG+ P+ +TY IL++ C + ++
Sbjct: 501 PGVITYNVLMNGLCKQGQMKNANMLLEAM-LNLGVTPDDITYNILLEGHCKNGKAEDLLK 559
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L ++ G D Y +++ Y
Sbjct: 560 L---RNEKGLIVDYAYYTSLVSEY 580
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
+L+ + S T++ F ++ G P + Y ILI+ C ++R+A + + +
Sbjct: 192 GYLLDKMINSNSPVTIWTFYSEI-LEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIR 250
Query: 74 DSGFKPDCFVYNTIMKG 90
G +P +NT++ G
Sbjct: 251 KRGLRPTTVSFNTLING 267
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
FK + PD TYN L+ LCK ++ + VD+M + G N+ TY LID +C ++
Sbjct: 376 FKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDN-GQPANIFTYNCLIDALCKNHHV 434
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ LV + D G +PD + +N ++ G
Sbjct: 435 DQAIALVKKIKDQGIQPDMYTFNILIYG 462
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD +T+N LV LCK +L N + M G+ PN+VTY+ L+D C
Sbjct: 269 MVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKE-GVMPNVVTYSSLMDGYCLVN 327
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A +++ +S G P+ Y T++ G+
Sbjct: 328 QVNKAKHVLNTISQMGAAPNAHSYCTMINGF 358
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L F + PDIFT+N L+ C C + ++ + ++ +G +P+ +T+ LI +C
Sbjct: 94 LEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKI-LKMGYEPDTITFNTLIKGLCLNG 152
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA+ + GF D F Y T++ G
Sbjct: 153 KVKEALHFHDHVLALGFHLDQFSYGTLING 182
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P +IFTYN L+ LCK + V +++ GI+P++ T+ ILI +C L+ A
Sbjct: 415 PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQ-GIQPDMYTFNILIYGLCKVGRLKNAQ 473
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ L G+ + + YN ++ G
Sbjct: 474 DVFQDLLSKGYSVNAWTYNIMVNG 497
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++T+N L+ LCK L + V Q S G N TY I+++ +C
Sbjct: 447 QGIQPDMYTFNILIYGLCKVGRLKNAQD-VFQDLLSKGYSVNAWTYNIMVNGLCKEGLFD 505
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L+S + D+G PD Y T+++
Sbjct: 506 EAEALLSKMDDNGIIPDAVTYETLIQA 532
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F+Y L+ LCK T + ++ L +K N+V Y +ID++C K + +A L
Sbjct: 172 DQFSYGTLINGLCKIGETRTALQMLRKIDGKL-VKINVVMYNTIIDSLCKHKLVIDAYEL 230
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + PD ++ ++ G+
Sbjct: 231 YSQMIAKKISPDVVTFSALIYGF 253
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ YN ++ LCK + + Y QM A I P++VT++ LI C L
Sbjct: 202 KLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAK-KISPDVVTFSALIYGFCIVGQLE 260
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA L + PD + +N ++
Sbjct: 261 EAFGLFREMVLKNINPDYYTFNILV 285
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+K LC + N V +M GIKPN+ TYT+LID++C+ L +A
Sbjct: 321 PTVRTYTVLIKALCGSERKSEALNLVKEMEEK-GIKPNIHTYTVLIDSLCSQCKLEKARE 379
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G P+ YN ++ GY
Sbjct: 380 LLGQMLEKGLMPNVITYNALINGY 403
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TY L+ LC L + QM G+ PN++TY LI+ C +
Sbjct: 352 KGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEK-GLMPNVITYNALINGYCKRGMIE 410
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ +V + +P+ YN ++KGY
Sbjct: 411 DALDVVELMESRNLRPNTRTYNELIKGY 438
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + T L+ L K Y QM +S G KP+ TYT I C L++A
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSS-GTKPDAHTYTTFIQTYCREGRLQDA 656
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+V+ + ++G PD F Y++++KGY
Sbjct: 657 EDMVAKMKENGVSPDLFTYSSLIKGY 682
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ PD+ TYN L+ C+ + + Y + M G+ P+ TYT +ID++C +K
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR-GLVPDPWTYTSMIDSLCKSK 511
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L +L P+ +Y ++ GY
Sbjct: 512 RVEEACDLFDSLEQKDVIPNVVMYTALIDGY 542
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TYN L+K CK R++ +++M + P++VTY LID C + N
Sbjct: 422 RNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKM-LERKVLPDVVTYNSLIDGQCRSGNFD 479
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A RL+S ++D G PD + Y +++
Sbjct: 480 SAYRLLSLMNDRGLVPDPWTYTSMI 504
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P++ TYN L+ CK + + V+ M S ++PN TY LI C +
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDALDVVELME-SRNLRPNTRTYNELIKGYCK-R 441
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +AM +++ + + PD YN+++ G
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDG 471
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD +TY ++ LCK + + + D + + PN+V YT LID C +
Sbjct: 491 RGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQK-DVIPNVVMYTALIDGYCKAGKVN 549
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + P+ +N ++ G
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHG 576
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD FTY L+ C+ + L + + +M G + N V YT LI +C +
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLK-GCRRNEVAYTHLIHGLCVER 302
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM L + D P Y ++K
Sbjct: 303 RIDEAMDLFVKMKDDDCYPTVRTYTVLIKA 332
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRA------SLGIKPNLVTYTILIDNVCNTKNLRE 64
Y ++ C + + VD+M+ + PN+ TY +++ C N+ E
Sbjct: 177 LKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEE 236
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + VS + ++G PD F Y +++ GY
Sbjct: 237 ANQYVSMIVEAGLDPDFFTYTSLIMGY 263
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I+TYN +V CK ++ +V M G+ P+ TYT LI C K+L A +
Sbjct: 216 PNIYTYNKMVNGYCKVGNVEEANQYV-SMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFK 274
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + + Y ++ G
Sbjct: 275 VFKEMPLKGCRRNEVAYTHLIHG 297
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ T+N L+ LC L +++ + ++P + T TILI +
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCTDGKLKEA-TLLEEKMVKIDLQPTVSTDTILIHRLLKDG 616
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A R + SG KPD Y T ++ Y
Sbjct: 617 DFDHAYRRFQQMLSSGTKPDAHTYTTFIQTY 647
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ C+ L + V +M+ + G+ P+L TY+ LI + A
Sbjct: 635 PDAHTYTTFIQTYCREGRLQDAEDMVAKMKEN-GVSPDLFTYSSLIKGYGDLGRTNSAFV 693
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + D+G +P + +++K
Sbjct: 694 VLKRMHDTGCEPSQHTFLSLIK 715
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD++TYN ++ LCK + +M + G +PN+VTY+ LID++C +
Sbjct: 189 MVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEA-GCQPNMVTYSTLIDSLCRDR 247
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + S + G PD F Y ++++G
Sbjct: 248 LVNEALDIFSYMKAKGISPDIFTYTSLIQG 277
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDIFTY L++ LCK +++M SL I P++VT+ +L+D C +
Sbjct: 262 KGISPDIFTYTSLIQGLCKFSRWKEASALLNEM-TSLNIMPDIVTFNVLVDTFCKEGKVS 320
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ ++ +++ G +P+ Y+++M GY
Sbjct: 321 EALGVLKTMTEMGVEPNVVTYSSLMYGY 348
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY+ L+ CK L + M+++ +KPNLV YTIL+ +C + N ++A +
Sbjct: 441 PDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTY-LKPNLVMYTILVHAMCKSGNHKDARK 499
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L G +P +Y TI+ G
Sbjct: 500 LFSELFVQGLQPHVQLYTTIING 522
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P+IF+YN L+ CK + + ++M G+ PN V+Y LI C
Sbjct: 364 MITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEM-IHQGLTPNNVSYNTLIHGFCQLG 422
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA L + +G PD F Y+ ++ G+
Sbjct: 423 KLREAQDLFRNMCTNGNLPDLFTYSILLDGF 453
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I+T + + C C+ + + ++ + ++ LG++P +VT+T LI+ +C +A
Sbjct: 124 LSPNIYTLSIFMNCFCQLQRVDLGFSVLAKV-IKLGLQPTIVTFTTLINGLCKVGEFAQA 182
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G +PD + YNTI+ G
Sbjct: 183 VELFDDMVAKGCQPDVYTYNTIING 207
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N LV CK ++ + M +G++PN+VTY+ L+ ++ EA +
Sbjct: 301 PDIVTFNVLVDTFCKEGKVSEALGVLKTM-TEMGVEPNVVTYSSLMYGYSLWTDVVEARK 359
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KP+ F YN ++ GY
Sbjct: 360 LFHVMITKGCKPNIFSYNILINGY 383
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ +YN L+ C+ L + M + G P+L TY+IL+D C
Sbjct: 399 MIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNM-CTNGNLPDLFTYSILLDGFCKQG 457
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A RL A+ + KP+ +Y ++
Sbjct: 458 YLGKAFRLFRAMQSTYLKPNLVMYTILVHA 487
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y LV +CK + ++ G++P++ YT +I+ +C L EA
Sbjct: 474 LKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQ-GLQPHVQLYTTIINGLCKEGLLDEA 532
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G PD YN I++G
Sbjct: 533 LEAFRNMEADGCPPDEISYNVIIRG 557
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + L P + Y ++ LCK L M A G P+ ++Y ++I + K
Sbjct: 504 LFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEAD-GCPPDEISYNVIIRGLLQHK 562
Query: 61 NLREAMRLVSALSDSGFKPD 80
+ A+ LV + D GF D
Sbjct: 563 DESRALLLVGEMRDRGFIAD 582
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD TYN L+ LC L +M A G P+LVTY+IL+D++C ++L
Sbjct: 374 KEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVAR-GQMPDLVTYSILLDSLCKNRHLE 432
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ A+ S PD VYN I+ G
Sbjct: 433 EAMALLKAIEASNLNPDIQVYNIIIDG 459
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ ++ +V LCK +T + VD M G++P++VTYT L+D C
Sbjct: 266 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM-IQRGVEPDVVTYTTLMDGHCLQS 324
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + GF PD Y T++ GY
Sbjct: 325 EMDEAVKVFDMMVRKGFAPDVISYTTLINGY 355
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDIFTY LV LC V ++QM S I P++V ++ ++D +C
Sbjct: 231 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNS-KILPDVVIFSTVVDALCKEG 289
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +PD Y T+M G+
Sbjct: 290 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGH 320
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LCK R +T +N QM GI P++ TYT L+ +CN +
Sbjct: 203 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ-GISPDIFTYTSLVHALCNLCEWKHVTT 261
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + +S PD +++T++
Sbjct: 262 LLNQMVNSKILPDVVIFSTVV 282
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+++T N L+ C + ++ + ++ LG +P+ T+T LI +C + EA
Sbjct: 96 VPPNVYTLNILINSFCHLNRVGFAFSVLAKI-LKLGHQPDPTTFTTLIRGLCVEGKIGEA 154
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + D GF+P+ Y T++ G
Sbjct: 155 LHLFDKMIDEGFQPNVVTYGTLING 179
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK + + + M +P++V YT +ID++C +
Sbjct: 161 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG-NCQPDVVIYTSIIDSLCKDR 219
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA L S + G PD F Y +++
Sbjct: 220 QVTEAFNLFSQMVGQGISPDIFTYTSLV 247
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI YN ++ +C+ L + + +S G+ P++ TY I+I +C L EA
Sbjct: 446 LNPDIQVYNIIIDGMCRAGELEAARDLFSNL-SSKGLHPSVWTYNIMIHGLCKRGLLNEA 504
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + + PD YNTI +G+
Sbjct: 505 NKLFMEMDGNDCSPDGCTYNTIARGF 530
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ LC + + D+M G +PN+VTY LI+ +C N A+R
Sbjct: 133 PDPTTFTTLIRGLCVEGKIGEALHLFDKM-IDEGFQPNVVTYGTLINGLCKVGNTSAAIR 191
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +PD +Y +I+
Sbjct: 192 LLRSMEQGNCQPDVVIYTSII 212
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ TY L+ C + D M G P++++YT LI+ C
Sbjct: 301 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMM-VRKGFAPDVISYTTLINGYCKIH 359
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + + PD YNT+M G
Sbjct: 360 KIDKAMYLFEEMCRKEWIPDTKTYNTLMYG 389
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PP I + L+ + K + +TV + QM S G+ PN+ T ILI++ C+
Sbjct: 56 LLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMD-SFGVPPNVYTLNILINSFCHLN 114
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +++ + G +PD + T+++G
Sbjct: 115 RVGFAFSVLAKILKLGHQPDPTTFTTLIRG 144
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P++FTY+ L+ LCK RSL + F +M + G +PN+VTYT LI +C + +
Sbjct: 256 KGIEPNVFTYSSLMDGLCKDGRSLQAMELF--EMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ L+ ++ G KPD +Y ++ G+
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGF 342
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF ++P PD +TY L+ LC+ + +M P +VTYT LI+ +
Sbjct: 179 IFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEM-VEKDCAPTVVTYTSLINGL 237
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +KN+ EAMR + + G +P+ F Y+++M G
Sbjct: 238 CGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDG 271
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + TY L+ LC +++ ++++M+ S GI+PN+ TY+ L+D +C
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMK-SKGIEPNVFTYSSLMDGLCKDG 276
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L + G +P+ Y T++ G
Sbjct: 277 RSLQAMELFEMMMARGCRPNMVTYTTLITG 306
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK + + +D+M G+KP+ Y +I C REA
Sbjct: 295 PNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ-GLKPDAGLYGKVISGFCAISKFREAAN 353
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + G P+ +N +K
Sbjct: 354 FLDEMILGGITPNRLTWNIHVK 375
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P++FTY+ L+ LCK RSL + F +M + G +PN+VTYT LI +C + +
Sbjct: 256 KGIEPNVFTYSSLMDGLCKDGRSLQAMELF--EMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ L+ ++ G KPD +Y ++ G+
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGF 342
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF ++P PD +TY L+ LC+ + +M P +VTYT LI+ +
Sbjct: 179 IFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEM-VEKDCAPTVVTYTSLINGL 237
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +KN+ EAMR V + G +P+ F Y+++M G
Sbjct: 238 CGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDG 271
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + TY L+ LC +++ +V++M+ GI+PN+ TY+ L+D +C
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGK-GIEPNVFTYSSLMDGLCKDG 276
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L + G +P+ Y T++ G
Sbjct: 277 RSLQAMELFEMMMARGCRPNMVTYTTLITG 306
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK + + +D+M G+KP+ Y +I C REA
Sbjct: 295 PNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ-GLKPDAGLYGKVISGFCAVSKFREAAN 353
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + G P+ +N +K
Sbjct: 354 FLDEMILGGITPNRLTWNIHVK 375
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D+++YN ++ CLC+C + V +M G +P++VT + LI+ C + +A
Sbjct: 41 IGHDLYSYNIVINCLCRCSRFVIALSVVGKM-MKFGYEPDVVTVSSLINGFCQGNRVFDA 99
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LVS + + GF+PD +YNTI+ G
Sbjct: 100 IDLVSKMEEMGFRPDVVIYNTIIDG 124
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTYN L+ LC + +D M + G P++VTY LI+ C +K + E
Sbjct: 216 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLM-VTKGCLPDVVTYNTLINGFCKSKRVDEG 274
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L ++ G D YNTI++GY
Sbjct: 275 TKLFREMAQRGLVGDTITYNTIIQGY 300
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TY+ L+ LC + + M+ S I+ ++ TY I+I +C N+ +A
Sbjct: 320 PNIRTYSILLYGLCMNWRVEKALVLFENMQKS-EIELDITTYNIVIHGMCKIGNVEDAWD 378
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +LS G KPD Y T++ G+
Sbjct: 379 LFRSLSCKGLKPDVVSYTTMISGF 402
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ T + L+ C+ + + V +M +G +P++V Y +ID C + +A+
Sbjct: 77 EPDVVTVSSLINGFCQGNRVFDAIDLVSKME-EMGFRPDVVIYNTIIDGSCKIGLVNDAV 135
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G + D YN+++ G
Sbjct: 136 ELFDRMERDGVRADAVTYNSLVAG 159
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D TYN LV LC + + M I PN++T+T +ID EAM+
Sbjct: 148 ADAVTYNSLVAGLCCSGRWSDAARLMRDM-VMRDIVPNVITFTAVIDVFVKEGKFSEAMK 206
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ PD F YN+++ G
Sbjct: 207 LYEEMTRRCVDPDVFTYNSLING 229
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ T+ ++ K + ++M + P++ TY LI+ +C
Sbjct: 176 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHG 234
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +++ + G PD YNT++ G+
Sbjct: 235 RVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 265
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI TYN ++ +CK ++ ++ + G+KP++V+YT +I C + +
Sbjct: 352 EIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK-GLKPDVVSYTTMISGFCRKRQWDK 410
Query: 65 AMRLVSALSDSGFKP 79
+ L + + G P
Sbjct: 411 SDLLYRKMQEDGLLP 425
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN ++ CK + D+M G++ + VTY L+ +C + +A R
Sbjct: 113 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERD-GVRADAVTYNSLVAGLCCSGRWSDAAR 171
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + P+ + ++
Sbjct: 172 LMRDMVMRDIVPNVITFTAVI 192
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 31/121 (25%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSL------------------TTVYNFV--------- 33
++ K PD+ TYN L+ CK + + T YN +
Sbjct: 246 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 305
Query: 34 ----DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++ + + +PN+ TY+IL+ +C + +A+ L + S + D YN ++
Sbjct: 306 PDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIH 365
Query: 90 G 90
G
Sbjct: 366 G 366
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TY L+ +CK ++ F+DQMR G+ PN TYT L+D + EA
Sbjct: 341 LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++ ++D+GF P YN ++ G+
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGH 425
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ Q+ P++FTYN L++ C ++ D+M G PN+VTY LID C +
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK-GCLPNVVTYNTLIDGYCKLR 254
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + +L+ +++ G +P+ YN ++ G
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVING 284
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK R + + + M A G++PNL++Y ++I+ +C ++E
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSM-ALKGLEPNLISYNVVINGLCREGRMKEVSF 296
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ ++ G+ D YNT++KGY
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGY 320
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ C + ++ M+ G+ P++V+Y+ ++ C + ++ EA+R
Sbjct: 413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFCRSYDVDEALR 471
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G KPD Y+++++G+
Sbjct: 472 VKREMVEKGIKPDTITYSSLIQGF 495
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ C+ R + ++M +G+ P+ TYT LI+ C
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM-LRVGLPPDEFTYTALINAYCMEG 534
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L +A++L + + + G PD Y+ ++ G
Sbjct: 535 DLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ +Y+ ++ C+ + +M GIKP+ +TY+ LI C + +
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM-VEKGIKPDTITYSSLIQGFCEQRRTK 502
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + G PD F Y ++ Y
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAY 530
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD FTY L+ C L ++M G+ P++VTY++LI+ + REA
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEM-VEKGVLPDVVTYSVLINGLNKQSRTREA 574
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
RL+ L P Y+T+++
Sbjct: 575 KRLLLKLFYEESVPSDVTYHTLIE 598
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+K CK + +M G+ P+++TYT LI ++C N+ AM
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRH-GLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ Y T++ G+
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGF 390
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + +YN ++ + R+++ N +M S + PN+ TY ILI C N+ A+
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLES-QVSPNVFTYNILIRGFCFAGNIDVAL 225
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L + G P+ YNT++ GY
Sbjct: 226 TLFDKMETKGCLPNVVTYNTLIDGY 250
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K L P++ +YN ++ LC+ + V + +M G + VTY LI C
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR-GYSLDEVTYNTLIKGYCKEG 324
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N +A+ + + + G P Y +++
Sbjct: 325 NFHQALVMHAEMLRHGLTPSVITYTSLI 352
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D+++YN ++ CLC+C + V +M G +P++VT + LI+ C + +A
Sbjct: 100 IGHDLYSYNIVINCLCRCSRFVIALSVVGKM-MKFGYEPDVVTVSSLINGFCQGNRVFDA 158
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LVS + + GF+PD +YNTI+ G
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDG 183
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTYN L+ LC + +D M + G P++VTY LI+ C +K + E
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLM-VTKGCLPDVVTYNTLINGFCKSKRVDEG 333
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L ++ G D YNTI++GY
Sbjct: 334 TKLFREMAQRGLVGDTITYNTIIQGY 359
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TY+ L+ LC + + M+ S I+ ++ TY I+I +C N+ +A
Sbjct: 379 PNIRTYSILLYGLCMNWRVEKALVLFENMQKS-EIELDITTYNIVIHGMCKIGNVEDAWD 437
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +LS G KPD Y T++ G+
Sbjct: 438 LFRSLSCKGLKPDVVSYTTMISGF 461
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ T + L+ C+ + + V +M +G +P++V Y +ID C + +A+
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFDAIDLVSKME-EMGFRPDVVIYNTIIDGSCKIGLVNDAV 194
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G + D YN+++ G
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAG 218
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D TYN LV LC + + M I PN++T+T +ID EAM+
Sbjct: 207 ADAVTYNSLVAGLCCSGRWSDAARLMRDM-VMRDIVPNVITFTAVIDVFVKEGKFSEAMK 265
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ PD F YN+++ G
Sbjct: 266 LYEEMTRRCVDPDVFTYNSLING 288
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ T+ ++ K + ++M + P++ TY LI+ +C
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHG 293
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +++ + G PD YNT++ G+
Sbjct: 294 RVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 324
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI TYN ++ +CK ++ ++ + G+KP++V+YT +I C + +
Sbjct: 411 EIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK-GLKPDVVSYTTMISGFCRKRQWDK 469
Query: 65 AMRLVSALSDSGFKP 79
+ L + + G P
Sbjct: 470 SDLLYRKMQEDGLLP 484
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN ++ CK + D+M G++ + VTY L+ +C + +A R
Sbjct: 172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERD-GVRADAVTYNSLVAGLCCSGRWSDAAR 230
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + P+ + ++
Sbjct: 231 LMRDMVMRDIVPNVITFTAVI 251
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 31/121 (25%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSL------------------TTVYNFV--------- 33
++ K PD+ TYN L+ CK + + T YN +
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Query: 34 ----DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++ + + +PN+ TY+IL+ +C + +A+ L + S + D YN ++
Sbjct: 365 PDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIH 424
Query: 90 G 90
G
Sbjct: 425 G 425
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L PD+ TYN L+ K R T + +++M++ G++PN VT+ I++ + E
Sbjct: 167 KLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINE 226
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A V + +SG PDCF YNT++ G+
Sbjct: 227 ASDAVVKMVESGVSPDCFTYNTMINGF 253
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN ++ CK L + +D+M A G+KP++ T ++ +C K EA
Sbjct: 241 PDCFTYNTMINGFCKAGKLGEAFRMMDEM-ARKGLKPDICTLNTMLHTLCMEKKPEEAYE 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L G+ D Y T++ GY
Sbjct: 300 LTVKARKRGYILDEVTYGTLIMGY 323
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PDIFT N L++ LC+ L + + + ++VTY +I +C
Sbjct: 409 MVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQN-SVDVVTYNTMISYLCKEG 467
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA L++ + F+PD + YN I++
Sbjct: 468 RLDEAFDLMTDMEVKKFEPDQYTYNAIVRA 497
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N +VK K + + V +M S G+ P+ TY +I+ C L EA R
Sbjct: 206 PNAVTHNIMVKWFGKEGKINEASDAVVKMVES-GVSPDCFTYNTMINGFCKAGKLGEAFR 264
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ ++ G KPD NT++
Sbjct: 265 MMDEMARKGLKPDICTLNTML 285
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +YN L++ LC + ++++ G+ P+ V+ I+I C + +A +
Sbjct: 346 PSVVSYNPLIRGLCLSGKTDQAVDKLNELLEK-GLVPDEVSCNIIIHGYCWEGMVDKAFQ 404
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + FKPD F N +++G
Sbjct: 405 FHNKMVGNSFKPDIFTRNILLRG 427
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI T N ++ LC + Y + R G + VTY LI K
Sbjct: 272 KGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKR-GYILDEVTYGTLIMGYFKGKQED 330
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++L + G P YN +++G
Sbjct: 331 KALKLWEEMKKRGIVPSVVSYNPLIRG 357
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ K + ++M+ GI P++V+Y LI +C + +A+
Sbjct: 312 DEVTYGTLIMGYFKGKQEDKALKLWEEMKKR-GIVPSVVSYNPLIRGLCLSGKTDQAVDK 370
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ L + G PD N I+ GY
Sbjct: 371 LNELLEKGLVPDEVSCNIIIHGY 393
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P + TY L++ +CK +D+MRA G PN+VTY ++I+ +C
Sbjct: 163 MLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAK-GCTPNIVTYNVIINGMCRED 221
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A ++++ LS GF+PD Y T++KG
Sbjct: 222 RVDDARQILNRLSSYGFQPDTVSYTTVLKG 251
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ T+N LV C+ + V QM G PNL+T+ L+D + N EA+
Sbjct: 481 PLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEH-GCTPNLITFNTLLDGITEDCNSEEAL 539
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ L G D Y++I+
Sbjct: 540 ELLHGLVSKGISLDTITYSSIV 561
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F LP P+ TY L+ LC L + +M + N+VT+ +L+ C
Sbjct: 439 LFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQN-DCPLNVVTFNVLVSFFCQK 497
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ LV + + G P+ +NT++ G
Sbjct: 498 GFVEEAIELVQQMMEHGCTPNLITFNTLLDG 528
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T++ LV+ C+ + +D+M + G N I+I+++C + +A
Sbjct: 275 PNEVTFDMLVRFFCRGGMVERAIEVLDRM-SEHGCTANTTLCNIVINSICKQGRVDDAFE 333
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G PD Y T++KG
Sbjct: 334 FLNNMGSYGCSPDTISYTTVLKG 356
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+F YN LV C+ L + AS+ + P+ TYT LI +C+ + +A+
Sbjct: 102 PVDVFAYNTLVAGYCRYGRLDAARRLI----ASMPVPPDAYTYTPLIRGLCDRGRVGDAL 157
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + +P Y +++
Sbjct: 158 SLLDDMLRRECQPSVVTYTVLLEA 181
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP+ T+N + LC+ + ++QM G +VTY L++ C
Sbjct: 373 MVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQM-PEYGCSVGIVTYNALVNGFCVQG 431
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L ++L +P+ Y T++ G
Sbjct: 432 RVDSALELFNSLP---CEPNTITYTTLLTG 458
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S G P++ T LI N+C +A R++ SG D F YNT++ GY
Sbjct: 63 SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGY 115
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N ++ +CK + + F++ M S G P+ ++YT ++ +C +A L++ +
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNM-GSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMV 374
Query: 74 DSGFKPDCFVYNTIM 88
P+ +NT +
Sbjct: 375 RKNCPPNEVTFNTFI 389
>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 426
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
FK + PD TY+ L+ L K ++ V++ +D+MRA+ G N++TY+ L++ +C + +
Sbjct: 269 FKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRAT-GRSANVITYSSLLNVLCKSGHF 327
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R+ + + D GF+P+ YN ++ G
Sbjct: 328 DTAIRIFTKIKDKGFEPNMVTYNILVDG 355
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD+ TYN L+ C L ++MR I PN+ ++ ILID +C
Sbjct: 127 MVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLK-NIVPNVCSFNILIDGLCKEG 185
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ +++ + KPD ++++ GY
Sbjct: 186 DVKGGKSVLAVMIKQSVKPDVVTCSSLIDGY 216
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD F Y+ ++ LCK + + Y+ +M I P++VTY LI C L +A+
Sbjct: 98 APDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKR-IFPDVVTYNTLIYGFCIVGQLEDAI 156
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + + P+ +N ++ G
Sbjct: 157 RLFNEMRLKNIVPNVCSFNILIDG 180
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ Y L+ LC+ + +D M G++PN+VTY +LI+++C ++R
Sbjct: 193 RGIEPDVVMYTALIDSLCRHGKVKKAARVMDMM-TERGLEPNVVTYNVLINSMCKEGSVR 251
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L +S+ G +PD YNT++ G
Sbjct: 252 EALDLRKNMSEKGVQPDVVTYNTLITG 278
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y L++ LC R + M+ G++P++VTY LI +C+ ++ A+
Sbjct: 92 PNAISYTTLMRALCADRRAAQAVGLLRSMQ-DCGVRPDVVTYGTLIRGLCDAADVDTAVE 150
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + +SG +P+ VY+ ++ GY
Sbjct: 151 LLNEMCESGIEPNVVVYSCLLHGY 174
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N ++ LCK + V M A G + NLV + +LI + +++AM
Sbjct: 304 PDLMTFNSVIHGLCKIGWMRQALQ-VRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAME 362
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ SG +PD F Y+ ++ G+
Sbjct: 363 LMDEMASSGLQPDSFTYSILINGF 386
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ Y+ L+ CK +V ++M + GI+P++V YT LID++C +++A
Sbjct: 160 IEPNVVVYSCLLHGYCKTGRWESVGKVFEEM-SGRGIEPDVVMYTALIDSLCRHGKVKKA 218
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
R++ +++ G +P+ YN ++
Sbjct: 219 ARVMDMMTERGLEPNVVTYNVLI 241
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ LC + T +++M S GI+PN+V Y+ L+ C T +
Sbjct: 127 PDVVTYGTLIRGLCDAADVDTAVELLNEMCES-GIEPNVVVYSCLLHGYCKTGRWESVGK 185
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +S G +PD +Y ++
Sbjct: 186 VFEEMSGRGIEPDVVMYTALI 206
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
D +YN ++ LC+ L + M L +PN ++YT L+ +C + +A+
Sbjct: 55 DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ D G +PD Y T+++G
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRG 138
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ L+ CK R + +++ +MR G++P V Y L+ +C+ + +A
Sbjct: 372 LQPDSFTYSILINGFCKMRQVERAESYLSEMRHQ-GMEPEPVHYIPLLKAMCDQGMMGQA 430
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + + D K D Y+T++ G
Sbjct: 431 RDLFNEM-DRNCKLDAAAYSTMIHG 454
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ +N L+ L + + +D+M AS G++P+ TY+ILI+ C + + A
Sbjct: 340 NLVAFNLLIGGLLRVHKVKKAMELMDEM-ASSGLQPDSFTYSILINGFCKMRQVERAESY 398
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+S + G +P+ Y ++K
Sbjct: 399 LSEMRHQGMEPEPVHYIPLLKA 420
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
K + PD+ TYN L+ L + +++M + ++P+L+T+ +I +C +
Sbjct: 263 KGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWM 322
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R+A+++ + ++++G + + +N ++ G
Sbjct: 323 RQALQVRAMMAENGCRCNLVAFNLLIGG 350
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G+ P+ VTY+I I+ + +L A R++ ++ SGF PD V++++++GY
Sbjct: 475 GLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGY 525
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T++ ++ CLC+ + + ++ +M GIKPN +TY ILI + C+T + +++
Sbjct: 487 PDVITFSLIINCLCRAKEIKDAFDCFKEM-LEWGIKPNEITYNILIRSSCSTGDTGRSVK 545
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + +SG P+ + YN I++ +
Sbjct: 546 LFANMKESGLSPNLYAYNAIIQSF 569
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + P YN ++ L K SL Y QMR+ KP+ TY ILI VC +
Sbjct: 167 FLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSD-DCKPDRFTYNILIHGVCKKGVV 225
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+RLV + G +P+ F Y ++ G+
Sbjct: 226 DEAIRLVKQMEREGNRPNVFTYTILIDGF 254
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TYN L++ C M+ S G+ PNL Y +I + C K +++A
Sbjct: 520 IKPNEITYNILIRSSCSTGDTGRSVKLFANMKES-GLSPNLYAYNAIIQSFCKMKKVKKA 578
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G KPD F Y+T++K
Sbjct: 579 EELLKTMLRIGLKPDNFTYSTLIKA 603
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ +CK + V QM G +PN+ TYTILID + EA++
Sbjct: 207 PDRFTYNILIHGVCKKGVVDEAIRLVKQMERE-GNRPNVFTYTILIDGFLIAGRIEEALK 265
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + P+ T++ G
Sbjct: 266 QLEMMQVRKLNPNEATIRTLVHG 288
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 3 FKQLPPD-----IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
KQ+ D ++TYN ++ CLCK R F+ +M+ GI PNL+T+ +
Sbjct: 407 LKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQ-DRGISPNLITFNTFLSGYS 465
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
++++ +V L + G PD ++ I+
Sbjct: 466 AGGDVKKVHGVVEKLLEHGCNPDVITFSLII 496
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+++ YN +++ CK + + + M +G+KP+ TY+ LI + + EA
Sbjct: 555 LSPNLYAYNAIIQSFCKMKKVKKAEELLKTM-LRIGLKPDNFTYSTLIKALSESGRESEA 613
Query: 66 MRLVSALSDSGFKPDCF 82
+ S++ G PD +
Sbjct: 614 REMFSSMERHGCVPDSY 630
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P Y LV+ L + + ++ QM G+ ++ TY +ID +C + A
Sbjct: 382 PGFNGYLVLVQALLNAQRFSAGDRYLKQMGGD-GLLSSVYTYNAVIDCLCKARRTEHAAM 440
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D G P+ +NT + GY
Sbjct: 441 FLTEMQDRGISPNLITFNTFLSGY 464
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N + CL K L D S G KP Y +L+ + N + R
Sbjct: 347 PDSSTFNAAMNCLLKGHHLVETCGIFDCF-VSRGAKPGFNGYLVLVQALLNAQRFSAGDR 405
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G + YN ++
Sbjct: 406 YLKQMGGDGLLSSVYTYNAVI 426
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI +YN L+ LCK + L + +M A+ G PN VT T L+D +C +
Sbjct: 27 KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA-GCFPNSVTCTTLMDGLCKDGRMD 85
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EAM L+ A+ GF D +Y T++ G+
Sbjct: 86 EAMELLEAMKKKGFDADVVLYGTLISGF 113
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLR 63
L P++FT+N L+ LCK LT +M + S G NLVTY +L+ ++
Sbjct: 276 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG---NLVTYNMLLGGCLKAGKIK 332
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EAM L + D GF P+ F Y+ ++ G+
Sbjct: 333 EAMELWKQVLDLGFVPNSFTYSILIDGF 360
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY+ L+ CK R L +MR G+ P L Y L+ ++C +L +A
Sbjct: 348 PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH-GLNPALFDYNTLMASLCKEGSLEQAKS 406
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ +PD +NT++ G
Sbjct: 407 LFQEMGNANCEPDIISFNTMIDG 429
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK T + ++ M G +P+ VTY +L+ +C + +A +
Sbjct: 171 PDVVTYTGLIDGLCKDGRATHAMDLLNLM-VEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 229
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + G K D YNT+MKG
Sbjct: 230 ILRMMIEKGKKADVVTYNTLMKG 252
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + ++ TY+ LV LC+ ++ M A GI P++VTYT LID +C
Sbjct: 129 MLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM-AEHGIHPDVVTYTGLIDGLCKDG 187
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM L++ + + G +P YN ++ G
Sbjct: 188 RATHAMDLLNLMVEKGEEPSNVTYNVLLSG 217
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI ++N ++ K V +M +G++P+ +T++ LI+ + L EA
Sbjct: 418 PDIISFNTMIDGTLKAGDFQFVKELQMKM-VEMGLRPDALTFSTLINRLSKLGELDEAKS 476
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + SGF PD VY++++KG
Sbjct: 477 ALERMVASGFTPDALVYDSLLKG 499
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P TYN L+ LCK + + + +M G K ++VTY L+ +C+
Sbjct: 199 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKIL-RMMIEKGKKADVVTYNTLMKGLCDKG 257
Query: 61 NLREAMRLVSALSDSG--FKPDCFVYNTIMKG 90
+ EA++L +++ D+ +P+ F +N ++ G
Sbjct: 258 KVDEALKLFNSMFDNENCLEPNVFTFNMLIGG 289
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P +F YN L+ LCK SL + +M + +P+++++ +ID + +
Sbjct: 381 LNPALFDYNTLMASLCKEGSLEQAKSLFQEM-GNANCEPDIISFNTMIDGTLKAGDFQFV 439
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + + G +PD ++T++
Sbjct: 440 KELQMKMVEMGLRPDALTFSTLI 462
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P+I TYN L+ LC L +M AS G P+LVTY IL+D +C T++L
Sbjct: 383 RELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVAS-GQIPDLVTYRILLDYLCKTRHLD 441
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM ++ A+ S PD YN ++ G
Sbjct: 442 QAMAMLKAIEGSNLAPDIQSYNIVIDG 468
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI +YN ++ +C+ L + + +S G+ P++ TYTI+I+ +C L EA
Sbjct: 455 LAPDIQSYNIVIDGMCRVGELEAAGDLFSSL-SSKGLHPDVWTYTIMINGLCLQGLLAEA 513
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L ++ G PD YN I +G+
Sbjct: 514 TKLFREMNTDGCSPDDCTYNLITRGF 539
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ + LV LCK +T ++ VD M G++P++VTYT L+D C
Sbjct: 275 MVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVM-IQRGVEPDVVTYTALMDGHCLRS 333
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G P+ Y+T++ GY
Sbjct: 334 EMDEADKVFDTMVRKGCAPNVISYSTLINGY 364
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ LC + + D+M G +PN VTY LI +C N R A+R
Sbjct: 142 PDTATFTTLIRGLCVEGKIGEALHLFDKMVGE-GFQPNGVTYGTLIHGLCKVGNSRAAIR 200
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +P+ YNTI+
Sbjct: 201 LLRSMVQKNCEPNVITYNTII 221
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ TYN ++ CL K R + N +M A GI PN+ TY +I +C
Sbjct: 205 MVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAK-GISPNVSTYNSIIHGLCKFS 263
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ L++ + DS P+ ++ T++
Sbjct: 264 EWKHVATLMNEMVDSKIMPNVVIFTTLV 291
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P D++T ++ C + ++ + ++ LG +P+ T+T LI +C + EA
Sbjct: 105 IPSDVYTLAIVINSFCHLNRVDFGFSVLAKI-FKLGHQPDTATFTTLIRGLCVEGKIGEA 163
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+P+ Y T++ G
Sbjct: 164 LHLFDKMVGEGFQPNGVTYGTLIHG 188
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ TY L+ C + D M G PN+++Y+ LI+ C +
Sbjct: 310 MIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTM-VRKGCAPNVISYSTLINGYCKIQ 368
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + P+ YNT++ G
Sbjct: 369 RIDKAMYLFEEMCQRELVPNIVTYNTLIHG 398
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ TY L+ LCK + + M +PN++TY +ID + +
Sbjct: 170 MVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSM-VQKNCEPNVITYNTIIDCLFKDR 228
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + S + G P+ YN+I+ G
Sbjct: 229 QVNEALNIFSEMIAKGISPNVSTYNSIIHG 258
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ Q PP + + ++ + + +TV + QM SLGI ++ T I+I++ C+
Sbjct: 65 MLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMD-SLGIPSDVYTLAIVINSFCHLN 123
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +++ + G +PD + T+++G
Sbjct: 124 RVDFGFSVLAKIFKLGHQPDTATFTTLIRG 153
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ PD+FTY+ L+K LC + + +M+ G PN VTY LID C N+
Sbjct: 362 HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK-GFLPNAVTYNTLIDGYCKEGNME 420
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ + S +++ G +P+ ++T++ GY
Sbjct: 421 KAIEVCSQMTEKGIEPNIITFSTLIDGY 448
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T+ L+ LCK + + F+ M AS G+ PN+ Y LID C NL EA
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDM-ASFGVVPNIFVYNCLIDGYCKAGNLSEA 352
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L S + PD F Y+ ++KG
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKG 377
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ CK + +M G+ PN+VT+ ILID +C T + A +
Sbjct: 261 PNLYTYNTMMDGYCKIAHVKKALELYQEMLGD-GLLPNVVTFGILIDGLCKTDEMVSARK 319
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G P+ FVYN ++ GY
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGY 343
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ TY L+ C+ + D+M I P +V YTILI +C
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM-IEKKIFPTVVIYTILIRGLCGES 242
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + +SG P+ + YNT+M GY
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ TYN L+ CK ++ QM GI+PN++T++ LID C +
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEK-GIEPNIITFSTLIDGYCKAGKME 455
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM L + + G PD Y ++ G+
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGH 483
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I T++ L+ CK + +M G+ P++V YT LID N +
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK-GLLPDVVAYTALIDGHFKDGNTK 490
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA RL + ++G P+ F + ++ G
Sbjct: 491 EAFRLHKEMQEAGLHPNVFTLSCLIDG 517
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P + Y L++ LC ++ + MR S G+ PNL TY ++D C
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNS-GMLPNLYTYNTMMDGYCKIA 277
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++++A+ L + G P+ + ++ G
Sbjct: 278 HVKKALELYQEMLGDGLLPNVVTFGILIDG 307
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L++ LC + F MR S G++P++ T ++I +LR+ M
Sbjct: 554 PNHVMYTALIQGLCTDGRIFKASKFFSDMRCS-GLRPDVFTCIVIIQGHFRAMHLRDVMM 612
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ VY + KGY
Sbjct: 613 LQADILKMGIIPNSSVYRVLAKGY 636
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLT-------------TVYNFVDQMRASLGIKPNLVTYTIL 52
L P++FT + L+ LCK ++ T + +++ SL PN V YT L
Sbjct: 504 LHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSL-CSPNHVMYTAL 562
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I +C + +A + S + SG +PD F I++G+
Sbjct: 563 IQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGH 601
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ Y L+ K + + +M+ + G+ PN+ T + LID +C
Sbjct: 464 MVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA-GLHPNVFTLSCLIDGLCKDG 522
Query: 61 NLREAMRLVSA 71
+ +A++L A
Sbjct: 523 RISDAIKLFLA 533
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD+ TYN L+ LCK +++ + M G+ P+ TY I+I C+ L EA
Sbjct: 231 LPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDK-GVMPDTRTYNIMIRGYCSLGQLEEA 289
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+RL+ +S SG +PD Y+ +++ Y
Sbjct: 290 VRLLKKMSGSGLQPDVVTYSLLIQYY 315
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD N ++ LCK + +F D M +G+KP++V+Y LID C
Sbjct: 471 MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFD-MVIHIGVKPDVVSYNTLIDGYCFVG 529
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+++ + + G +PD + YN+++ GY
Sbjct: 530 KMDESIKQLDRMVSIGLRPDSWTYNSLLNGY 560
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TYN +++ C L + +M S G++P++VTY++LI C
Sbjct: 264 KGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS-GLQPDVVTYSLLIQYYCKIGRCA 322
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + ++ G KP+ +Y+ ++ GY
Sbjct: 323 EARSVFDSMVRKGQKPNSTIYHILLHGY 350
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 42/133 (31%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLC---------------------KCRSLTTVYN--- 31
++F+++P PD+F+YN L+K LC C YN
Sbjct: 148 MVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVI 207
Query: 32 -------------FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFK 78
F+ G+ P++VTY LID +C + + +A+ ++ + D G
Sbjct: 208 DGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVM 267
Query: 79 PDCFVYNTIMKGY 91
PD YN +++GY
Sbjct: 268 PDTRTYNIMIRGY 280
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 6 LPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD+ +Y+ ++ LCK R VY+F +QM S G+ PN++++T LI +C+ ++
Sbjct: 406 LRPDVVSYSTVIHILCKTGRVEDAVYHF-NQM-VSEGLSPNIISFTSLIHGLCSIGEWKK 463
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
L + + G PD NTIM
Sbjct: 464 VEELAFEMINRGIHPDAIFMNTIM 487
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR-LVS 70
T N L+K LC + V + LG P++ +Y LI +C K +EA+ L+
Sbjct: 128 TLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIH 187
Query: 71 ALSDSGFK--PDCFVYNTIMKGY 91
+D G+ P+ YNT++ G+
Sbjct: 188 MTADGGYNCSPNVVSYNTVIDGF 210
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +P + +N L+ K ++ +MR + G++P++V+Y+ +I +C T
Sbjct: 366 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQN-GLRPDVVSYSTVIHILCKTG 424
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + + G P+ + +++ G
Sbjct: 425 RVEDAVYHFNQMVSEGLSPNIISFTSLIHG 454
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ PD+FTY+ L+K LC + + +M+ G PN VTY LID C N+
Sbjct: 362 HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK-GFLPNAVTYNTLIDGYCKEGNME 420
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ + S +++ G +P+ ++T++ GY
Sbjct: 421 KAIEVCSQMTEKGIEPNIITFSTLIDGY 448
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T+ L+ LCK + + F+ M AS G+ PN+ Y LID C NL EA
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDM-ASFGVVPNIFVYNCLIDGYCKAGNLSEA 352
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L S + PD F Y+ ++KG
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKG 377
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ CK + +M G+ PN+VT+ ILID +C T + A +
Sbjct: 261 PNLYTYNTMMDGYCKIAHVKKALELYQEMLGD-GLLPNVVTFGILIDGLCKTDEMVSARK 319
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G P+ FVYN ++ GY
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGY 343
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ TY L+ C+ + D+M I P +V YTILI +C
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM-IEKKIFPTVVIYTILIRGLCGES 242
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + +SG P+ + YNT+M GY
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ TYN L+ CK ++ QM GI+PN++T++ LID C +
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEK-GIEPNIITFSTLIDGYCKAGKME 455
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM L + + G PD Y ++ G+
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGH 483
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I T++ L+ CK + +M G+ P++V YT LID N +
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK-GLLPDVVAYTALIDGHFKDGNTK 490
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA RL + ++G P+ F + ++ G
Sbjct: 491 EAFRLHKEMQEAGLHPNVFTLSCLIDG 517
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P + Y L++ LC ++ + MR S G+ PNL TY ++D C
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNS-GMLPNLYTYNTMMDGYCKIA 277
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++++A+ L + G P+ + ++ G
Sbjct: 278 HVKKALELYQEMLGDGLLPNVVTFGILIDG 307
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ Y L+ K + + +M+ + G+ PN+ T + LID +C
Sbjct: 464 MVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA-GLHPNVFTLSCLIDGLCKDG 522
Query: 61 NLREAMRLVSA 71
+ +A++L A
Sbjct: 523 RISDAIKLFLA 533
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-----------SLGIKPNLVTYTILIDNV 56
PD+ TY+ ++ LCK +++ ++ + R +G+KP+++TY+ LID
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 288
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + EAM+L+S + G KP+ Y+T++ GY
Sbjct: 289 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGY 323
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ L+ C + + M S+G+KPN VTY+ LI+ C + +A+
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLLSGM-VSVGLKPNTVTYSTLINGYCKISRMEDALV 334
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD YN I++G
Sbjct: 335 LFKEMESSGVSPDIITYNIILQG 357
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 309 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESS-GVSPDIITYNIILQGLFQTRRTAAA 367
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 368 KELYVRITESGTQIELSTYNIILHG 392
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + T+ L+K LC + + + V + LG PN+ +Y L++ +C+
Sbjct: 113 VIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDEN 172
Query: 61 NLREAMRLVSALSDS---GFKPDCFVYNTIMKGY 91
+EA+ L+ ++D G PD Y T++ G+
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+ TY L+ C C+ L + + + G + +T+T L+ +C K +
Sbjct: 82 EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKK-GFRVEAITFTPLLKGLCADKRTSD 140
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ G P+ F YN ++ G
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNNLLNG 167
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKPNLVTYTILIDNVCNTKNLREA 65
P++F+YN L+ LC + M G P++V+YT +I+ + +A
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ D G PD Y++I+
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSII 238
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K L P+++T+N L+ LCK ++M++S G P+ VTY ILIDN+C++
Sbjct: 397 LTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSS-GCTPDEVTYNILIDNLCSSG 455
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+ L+ + SG YNTI+ G
Sbjct: 456 KLAKALDLLKEMEVSGCPQSTVTYNTIIDG 485
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN ++ LCK R + DQM + GI N +T+ LID +CN + + +A
Sbjct: 473 PQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVT-GIGRNAITFNTLIDGLCNAERIDDAA 531
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
LV + G +P+ YN+I+ Y
Sbjct: 532 ELVDQMISEGLQPNNVTYNSILTHY 556
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ LC + VDQM S G++PN VTY ++ + C N+ +A ++
Sbjct: 513 TFNTLIDGLCNAERIDDAAELVDQM-ISEGLQPNNVTYNSILTHYCKQGNISKAADILQT 571
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +GF+ D Y T++ G
Sbjct: 572 MTANGFEVDVVTYATLING 590
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ T+N ++ LC+ R T +++M +S + P+ T+T L++ ++ A
Sbjct: 192 IEPDVVTFNTVIDALCRARQARTAVLMLEEM-SSCDVAPDETTFTTLMEGFVEEGSIEAA 250
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+RL + +S+ G P N ++ GY
Sbjct: 251 LRLKARMSEMGCSPTSVTVNVLINGY 276
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ LC L + ++ G+ PN+ T+ ILI+ +C + A+R
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVK-GLSPNVYTFNILINALCKVGDPHLAVR 427
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + SG PD YN ++
Sbjct: 428 LFEEMKSSGCTPDEVTYNILI 448
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC L + + +M S G + VTY +ID +C + + EA
Sbjct: 439 PDEVTYNILIDNLCSSGKLAKALDLLKEMEVS-GCPQSTVTYNTIIDGLCKRRRIEEAEE 497
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + +G + +NT++ G
Sbjct: 498 VFDQMDVTGIGRNAITFNTLIDG 520
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L+ LCK R + MR G+KP Y +I ++ N R+A+ L
Sbjct: 580 DVVTYATLINGLCKARRTQAALKLLRGMRMK-GMKPTPKAYNPVIQSLFRGNNGRDALSL 638
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ G PD F Y + +G
Sbjct: 639 FREMTEVGGPPDAFTYKIVFRG 660
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ TYN ++ CK +++ + + M A+ G + ++VTY LI+ +C +
Sbjct: 537 MISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTAN-GFEVDVVTYATLINGLCKAR 595
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A++L+ + G KP YN +++
Sbjct: 596 RTQAALKLLRGMRMKGMKPTPKAYNPVIQ 624
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T++ V LC+ + + M G +P++ TY+ +I+ +CN L EA
Sbjct: 299 PDRVTFSTFVNGLCQNGHVDHALKVLGLMLQE-GCEPDVYTYSTVINCLCNNGELEEAKG 357
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V+ + DSG PD +NT++
Sbjct: 358 IVNQMVDSGCLPDTTTFNTLI 378
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ L + + + + +M +S GI+P++VT+ +ID +C + R A+ ++ +
Sbjct: 164 YNHLLTVLAEGSKIKLLESAYTEM-SSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEM 222
Query: 73 SDSGFKPDCFVYNTIMKGY 91
S PD + T+M+G+
Sbjct: 223 SSCDVAPDETTFTTLMEGF 241
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T N L+ CK + ++ Q A G +P+ VT++ ++ +C ++ A++
Sbjct: 264 PTSVTVNVLINGYCKLGRVGDALGYIQQEIAD-GFEPDRVTFSTFVNGLCQNGHVDHALK 322
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G +PD + Y+T++
Sbjct: 323 VLGLMLQEGCEPDVYTYSTVI 343
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-----------SLGIKPNLVTYTILIDNV 56
PD+ TY+ ++ LCK +++ ++ + R +G+KP+++TY+ LID
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 288
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + EAM+L+S + G KP+ Y+T++ GY
Sbjct: 289 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGY 323
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ L+ C + + M S+G+KPN VTY+ LI+ C + +A+
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLLSGM-VSVGLKPNTVTYSTLINGYCKISRMEDALV 334
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD YN I++G
Sbjct: 335 LFKEMESSGVSPDIITYNIILQG 357
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 309 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESS-GVSPDIITYNIILQGLFQTRRTAAA 367
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 368 KELYVRITESGTQIELSTYNIILHG 392
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + T+ L+K LC + + + V + LG PN+ +Y L++ +C+
Sbjct: 113 VIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDEN 172
Query: 61 NLREAMRLVSALSDS---GFKPDCFVYNTIMKGY 91
+EA+ L+ ++D G PD Y T++ G+
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+ TY L+ C C+ L + + + G + +T+T L+ +C K +
Sbjct: 82 EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKK-GFRVEAITFTPLLKGLCADKRTSD 140
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ G P+ F YN ++ G
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNNLLNG 167
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKPNLVTYTILIDNVCNTKNLREA 65
P++F+YN L+ LC + M G P++V+YT +I+ + +A
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ D G PD Y++I+
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSII 238
>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TYN L+ LC+ L N V +M +K +L+TY IL+D++CN
Sbjct: 346 MLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTK-HLKADLITYNILMDSLCNKG 404
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ +RL+ + G KP YNT++ GY
Sbjct: 405 EMKKTLRLLDEMCKKGLKPSQLTYNTMIDGY 435
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ C ++++ +M G+KPN+VTY LI+ +CN + EA
Sbjct: 213 PNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQ-GVKPNVVTYNSLINGLCNNGKVNEATT 271
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + +S +P+ +N ++ G+
Sbjct: 272 LRDQMVNSCLEPNIITHNALLNGF 295
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 35 QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+M+A GI PN VT+ ILID CN KN+ AM++ + ++ G KP+ YN+++ G
Sbjct: 205 EMKAD-GICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLING 259
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I T+N L+ CK + + + M I PN+ TY ILID C +N+ +A
Sbjct: 281 LEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQR-ITPNVTTYNILIDAYCKDENMEDA 339
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD YN ++ G
Sbjct: 340 FALYRIMLGKGVYPDVSTYNCLIVG 364
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D+ TYN L+ LC + +D+M G+KP+ +TY +ID NLR
Sbjct: 384 KHLKADLITYNILMDSLCNKGEMKKTLRLLDEM-CKKGLKPSQLTYNTMIDGYSKEGNLR 442
Query: 64 E 64
+
Sbjct: 443 Q 443
>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD TYN L+ LCK ++ + VD+MR S G +++TY LID +C ++
Sbjct: 365 RRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDS-GQPADIITYNSLIDALCKNHHVD 423
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ LV + D G + D + YN ++ G
Sbjct: 424 KAIALVKKIKDQGIQLDMYTYNILIDG 450
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P + T N L+ C + + +M I P++ T+ IL+D +C
Sbjct: 237 MITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLK-NINPDVYTFNILVDALCKEG 295
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + G PD Y+++M GY
Sbjct: 296 KIKEAKSGIAVMMKEGVMPDVVTYSSLMDGY 326
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P DI TYN L+ LCK + V +++ GI+ ++ TY ILID +C L++A
Sbjct: 403 PADIITYNSLIDALCKNHHVDKAIALVKKIKDQ-GIQLDMYTYNILIDGLCKQGRLKDAQ 461
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ L G+ + Y ++ G
Sbjct: 462 VIFQDLLIKGYNLTVWTYTIMING 485
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + + ++ L K + TV + Q+ + GIKPN+V+ +ILI+ C+ +R A
Sbjct: 68 APSVIEFGKILSSLVKLKHYPTVISLFYQLEFN-GIKPNIVSLSILINCYCHLGQMRFAF 126
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G+ P+ T++KG+
Sbjct: 127 SIFAKILKMGYHPNTITLTTLVKGF 151
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y+ ++ CK + + + +MR I P+ VTY LID +C + + A LV +
Sbjct: 339 YSIVINGFCKIKMVDKALSLFYEMRCR-RIAPDTVTYNSLIDGLCKSGRISYAWELVDEM 397
Query: 73 SDSGFKPDCFVYNTIM 88
DSG D YN+++
Sbjct: 398 RDSGQPADIITYNSLI 413
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++TYN L+ LCK L + G + TYTI+I+ +C L EA L
Sbjct: 440 DMYTYNILIDGLCKQGRLKDAQVIFQDLLIK-GYNLTVWTYTIMINGLCLEGLLNEAETL 498
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+S + D+G PD TI++
Sbjct: 499 LSKMEDNGCVPDAVTCETIIRA 520
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 21/110 (19%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT---------- 50
++ K + PD++T+N LV LCK + + + M G+ P++VTY+
Sbjct: 272 MVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKE-GVMPDVVTYSSLMDGYCLVN 330
Query: 51 ----------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
I+I+ C K + +A+ L + PD YN+++ G
Sbjct: 331 EVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDG 380
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T LVK C + +F D + A LG N V+Y LI+ +C R A++
Sbjct: 139 PNTITLTTLVKGFCLNHKVKEALHFHDHVLA-LGFHFNQVSYGTLINGLCKIGETRAALQ 197
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + D +Y+TI+ G
Sbjct: 198 MLRQIEGKLVSTDVVMYSTIIDG 220
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L F + P+I + + L+ C C + ++ ++ +G PN +T T L+ C
Sbjct: 97 LEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKI-LKMGYHPNTITLTTLVKGFCLNH 155
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA+ + GF + Y T++ G
Sbjct: 156 KVKEALHFHDHVLALGFHFNQVSYGTLING 185
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ LCK + Q+ L + ++V Y+ +ID +C K + +A L S
Sbjct: 178 SYGTLINGLCKIGETRAALQMLRQIEGKL-VSTDVVMYSTIIDGLCKDKLVNDAYELYSE 236
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ P N+++ GY
Sbjct: 237 MITKRISPTVVTLNSLIYGY 256
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI +YN L+ LCK + L + +M A+ G PN VT T L+D +C +
Sbjct: 173 KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA-GCFPNSVTCTTLMDGLCKDGRMD 231
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EAM L+ A+ GF D +Y T++ G+
Sbjct: 232 EAMELLEAMKKKGFDADVVLYGTLISGF 259
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLR 63
L P++FT+N L+ LCK LT +M + S G NLVTY +L+ ++
Sbjct: 422 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG---NLVTYNMLLGGCLKAGKIK 478
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EAM L + D GF P+ F Y+ ++ G+
Sbjct: 479 EAMELWKQVLDLGFVPNSFTYSILIDGF 506
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY+ L+ CK R L +MR G+ P L Y L+ ++C +L +A
Sbjct: 494 PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH-GLNPALFDYNTLMASLCKEGSLEQAKS 552
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ +PD +NT++ G
Sbjct: 553 LFQEMGNANCEPDIISFNTMIDG 575
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK T + ++ M G +P+ VTY +L+ +C + +A +
Sbjct: 317 PDVVTYTGLIDGLCKDGRATHAMDLLNLM-VEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 375
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + G K D YNT+MKG
Sbjct: 376 ILRMMIEKGKKADVVTYNTLMKG 398
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + ++ TY+ LV LC+ ++ M A GI P++VTYT LID +C
Sbjct: 275 MLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM-AEHGIHPDVVTYTGLIDGLCKDG 333
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM L++ + + G +P YN ++ G
Sbjct: 334 RATHAMDLLNLMVEKGEEPSNVTYNVLLSG 363
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI ++N ++ K V +M +G++P+ +T++ LI+ + L EA
Sbjct: 564 PDIISFNTMIDGTLKAGDFQFVKELQMKM-VEMGLRPDALTFSTLINRLSKLGELDEAKS 622
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + SGF PD VY++++KG
Sbjct: 623 ALERMVASGFTPDALVYDSLLKG 645
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P TYN L+ LCK + + + +M G K ++VTY L+ +C+
Sbjct: 345 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKIL-RMMIEKGKKADVVTYNTLMKGLCDKG 403
Query: 61 NLREAMRLVSALSDSG--FKPDCFVYNTIMKG 90
+ EA++L +++ D+ +P+ F +N ++ G
Sbjct: 404 KVDEALKLFNSMFDNENCLEPNVFTFNMLIGG 435
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P +F YN L+ LCK SL + +M + +P+++++ +ID + +
Sbjct: 527 LNPALFDYNTLMASLCKEGSLEQAKSLFQEM-GNANCEPDIISFNTMIDGTLKAGDFQFV 585
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + + G +PD ++T++
Sbjct: 586 KELQMKMVEMGLRPDALTFSTLI 608
>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 529
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
++ PPDIFTYN L+ LCK + + +++ GI+P++ TY ILI+ +C + L
Sbjct: 334 YRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQ-GIQPSVCTYNILINGLCKSGRL 392
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++A ++ L G+ D + YN ++KG+
Sbjct: 393 KDAEKVFEDLLVKGYNTDVYTYNAMIKGF 421
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
FKQ+ PD+ YN L+ LCK F+ +M G P++ TY L+D +C ++
Sbjct: 299 FKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYR-GQPPDIFTYNSLLDALCKNYHV 357
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ L D G +P YN ++ G
Sbjct: 358 DKAIELLTKLKDQGIQPSVCTYNILING 385
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P + TYN L+ LC L + +M I P + T++ILID C
Sbjct: 178 MVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILE-DINPTVYTFSILIDAFCKEG 236
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA + + + KP+ YN++M G+
Sbjct: 237 KMKEAKNVFAVMMKEDVKPNIVTYNSLMDGH 267
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K D T+ L+K LC + +F D++ A G K N V+Y LI+ +C R
Sbjct: 76 KGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQ-GFKLNQVSYGTLINGLCKVGQTR 134
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + +PD +YNTI+ G
Sbjct: 135 AALEFLRRIDGKLVQPDVVMYNTIIDG 161
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILID----- 54
+I + + P ++T++ L+ CK + N F M+ +KPN+VTY L+D
Sbjct: 213 MILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKED--VKPNIVTYNSLMDGHHLV 270
Query: 55 -------NVCNT--KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ NT K + EAM L + PD +YN+++ G
Sbjct: 271 NVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDG 315
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 4 KQLPPDIFTYN------FLVKCLCKCRSL-TTVYNFVDQMRASL------GIKPNLVTYT 50
+ + P+I TYN LV + K +S+ T+ VD+ I P++V Y
Sbjct: 251 EDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYN 310
Query: 51 ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
LID +C + A++ + + G PD F YN+++
Sbjct: 311 SLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLL 348
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ LCK F+ ++ L ++P++V Y +ID +C K + +A L
Sbjct: 119 SYGTLINGLCKVGQTRAALEFLRRIDGKL-VQPDVVMYNTIIDGLCKDKLVNDAFNLYFE 177
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ P YNT++ G
Sbjct: 178 MVAKRICPSVVTYNTLICG 196
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PPD+ +Y ++ LCK + +D+M G +PN++TY L+D C
Sbjct: 105 MVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKM-IQRGCQPNVITYGTLVDGFCRVG 163
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A+ LV +++ G++P+ YN IM G
Sbjct: 164 DLDGAVELVRKMTERGYRPNAITYNNIMHG 193
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 2 IFKQL------PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
+FK++ PPD+FTY+ +V L K + V+ M S G PN+VTY+ L+
Sbjct: 206 LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAM-VSKGCSPNVVTYSSLLHG 264
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C L EA L+ ++ SG P+ YNTI+ G+
Sbjct: 265 LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 300
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN ++ CK + Y+ +++M G +PN+VTYT+L+D C +A+
Sbjct: 288 PNIVTYNTIIDGHCKLGRIDEAYHLLEEM-VDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 346
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
LV + + G+ P+ F YN+++
Sbjct: 347 LVEVMVEKGYVPNLFTYNSLL 367
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK + + Y QM S G+ P+ VTY+I+I ++C + + EA
Sbjct: 499 PDIITYNTVIDGLCKSKRVDRAYKLFLQM-LSDGLAPDDVTYSIVISSLCKWRFMDEANN 557
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +GF P Y T++ G+
Sbjct: 558 VLELMLKNGFDPGAITYGTLIDGF 581
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ TY+ L+ LCK L + +M S G PN+VTY +ID C
Sbjct: 246 MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS-GCSPNIVTYNTIIDGHCKLG 304
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L+ + D G +P+ Y ++ +
Sbjct: 305 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAF 335
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN LV LCK R + +M G P+++TY +ID +C +K + A +
Sbjct: 463 PNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 522
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G PD Y+ ++
Sbjct: 523 LFLQMLSDGLAPDDVTYSIVI 543
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N ++ +CK + Y + ++ S G PNLVTY L+ +C ++ +A
Sbjct: 428 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQES-GCTPNLVTYNSLVHGLCKSRRFDQAEY 486
Query: 68 LVSALS-DSGFKPDCFVYNTIMKG 90
L+ ++ G PD YNT++ G
Sbjct: 487 LLREMTRKQGCSPDIITYNTVIDG 510
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TY L+ CK +L + Q+ S G P++VT++I ID + LR+A
Sbjct: 569 PGAITYGTLIDGFCKTGNLDKALEIL-QLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGE 627
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD YNT++KG+
Sbjct: 628 LLETMLRAGLVPDTVTYNTLLKGF 651
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LC R L + +M S P++ TY+ ++D++ + + +A R
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 241
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV A+ G P+ Y++++ G
Sbjct: 242 LVEAMVSKGCSPNVVTYSSLLHG 264
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD TY+ ++ LCK R + N ++ M + G P +TY LID C T
Sbjct: 527 MLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN-GFDPGAITYGTLIDGFCKTG 585
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
NL +A+ ++ L G PD ++
Sbjct: 586 NLDKALEILQLLLSKGSYPDVVTFS 610
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ P++F+YN ++ CK + ++QM G P++V+YT +I+ +C
Sbjct: 70 MVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM-VMRGCPPDVVSYTTVINGLCKLD 128
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA R++ + G +P+ Y T++ G+
Sbjct: 129 QVDEACRVMDKMIQRGCQPNVITYGTLVDGF 159
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY LV C+ L V +M G +PN +TY ++ +C+ +
Sbjct: 140 MIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM-TERGYRPNAITYNNIMHGLCSGR 198
Query: 61 NLREAMRLVSALSDSGF-KPDCFVYNTIM 88
L A++L + +SG PD F Y+TI+
Sbjct: 199 KLDSALQLFKEMEESGSCPPDVFTYSTIV 227
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ CKC V+ M G PNL TY L+D C + A +
Sbjct: 323 PNVVTYTVLLDAFCKCGKAEDAIGLVEVM-VEKGYVPNLFTYNSLLDMFCKKDEVERACQ 381
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+S++ G P+ YNT++ G
Sbjct: 382 LLSSMIQKGCVPNVVSYNTVIAG 404
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
P+ VTY +I+ + + L +A+RL+ + D+GF P+ F YNT++ G+
Sbjct: 42 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGF 89
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ +YN ++ LCK + ++QM ++ + P++VT+ +ID +C T
Sbjct: 386 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCV-PDIVTFNTIIDAMCKTY 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L + + +SG P+ YN+++ G
Sbjct: 445 RVDIAYELFNLIQESGCTPNLVTYNSLVHG 474
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PPD TYN ++ L K L +++M + G PN+ +Y ++ C +
Sbjct: 38 KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANRVE 96
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + G PD Y T++ G
Sbjct: 97 NALWLLEQMVMRGCPPDVVSYTTVING 123
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++FTYN L+ CK + + M G PN+V+Y +I +C
Sbjct: 351 MVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM-IQKGCVPNVVSYNTVIAGLCKAT 409
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ E + L+ + + PD +NTI+
Sbjct: 410 KVHEGVLLLEQMLSNNCVPDIVTFNTII 437
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNT 59
L+ K PD+ T++ + L K L ++ M RA G+ P+ VTY L+ C+
Sbjct: 597 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA--GLVPDTVTYNTLLKGFCDA 654
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L + G +PD Y T++
Sbjct: 655 SRTEDAVDLFEVMRQCGCEPDNATYTTLV 683
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L++ CK L + M+ + +KPNLV YTILID++C + NL A +
Sbjct: 439 PDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTY-LKPNLVMYTILIDSMCKSGNLNHARK 497
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L G +PD +Y TI+ G
Sbjct: 498 LFSELFVHGLQPDVQIYTTIING 520
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + +Y L++ LC +++M SL I P++VT+++LID C N+
Sbjct: 260 KGISPTVVSYTSLIQGLCSFSRWKEASAMLNEM-TSLNIMPDIVTFSLLIDIFCKEGNVL 318
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ +++ G +P+ YN++M GY
Sbjct: 319 EAQGVLKTMTEMGVEPNVITYNSLMHGY 346
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+F+Y+ L+ C + + ++M G+ PN V+YT LI C
Sbjct: 362 MITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEM-IHQGLTPNTVSYTTLIHAFCQLG 420
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA L + +G+ PD Y+ +++G+
Sbjct: 421 KLREARELFKDMHTNGYLPDLCTYSVLLEGF 451
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD++TY ++ LCK + +M +G +P++VTY+ LID++C +
Sbjct: 187 MVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKM-GEVGCQPDVVTYSTLIDSLCKDR 245
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + S + G P Y ++++G
Sbjct: 246 LVNEALDIFSYMKAKGISPTVVSYTSLIQG 275
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T N L+ C C + + ++ + ++ LG++P ++T+T LI+ +C +A
Sbjct: 122 LSPNTCTLNILINCFCLMQHVDLGFSVLAKV-IKLGLQPTIITFTTLINGLCKAGEFAQA 180
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G +PD + Y TI+ G
Sbjct: 181 LELFDDMVARGCQPDVYTYTTIING 205
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T++ L+ CK ++ + M +G++PN++TY L+ + EA +
Sbjct: 299 PDIVTFSLLIDIFCKEGNVLEAQGVLKTM-TEMGVEPNVITYNSLMHGYSLQMEVVEARK 357
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KPD F Y+ ++ GY
Sbjct: 358 LFDVMITRGCKPDVFSYSILINGY 381
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ +Y L+ C+ L M + G P+L TY++L++ C
Sbjct: 397 MIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN-GYLPDLCTYSVLLEGFCKQG 455
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A RL A+ + KP+ +Y ++
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILI 483
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L L PD+ Y ++ LCK L +M G PN +Y ++I K
Sbjct: 502 LFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEED-GCPPNEFSYNVIIRGFLQHK 560
Query: 61 NLREAMRLVSALSDSGFKPD 80
+ A++L+ + D GF D
Sbjct: 561 DESRAVQLIGEMRDKGFVAD 580
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++P PD +TY L+ LC+ + +M P +VTYT LI +
Sbjct: 178 IFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETK-ACSPTVVTYTSLIHGL 236
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C +K+L A+RL+ ++ G KP+ F Y+++M G+
Sbjct: 237 CQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGH 271
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++FTY+ L+ CK + +D M + + PN++TY+ L+ +C L+
Sbjct: 255 KGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHL-PNMITYSTLVHGLCKEGKLQ 313
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ ++ + G +PD +Y I+ G+
Sbjct: 314 EAVEILDRMKLQGLRPDAGLYGKIISGF 341
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY L+ LC+ + L + +++M AS GIKPN+ TY+ L+D C +
Sbjct: 220 KACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEM-ASKGIKPNVFTYSSLMDGHCKSGCSS 278
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + P+ Y+T++ G
Sbjct: 279 RALELLDMMVSRRHLPNMITYSTLVHG 305
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 26 LTTVYNFVDQMRASLGIKPNLVTYTILIDNVC-NTKNLREAMRLVSALSDSGFKPDCFVY 84
L F MR +GI P++ + +LI +C N+ + A+R+ + + G PD + Y
Sbjct: 136 LKLALRFYRYMR-EMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTY 194
Query: 85 NTIMKG 90
T++ G
Sbjct: 195 GTLING 200
>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g16890, mitochondrial-like
[Cucumis sativus]
Length = 688
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI L +I++YN ++ CLCK +S+ + + GI PN+VTY LI C
Sbjct: 456 LINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLH-NRGISPNIVTYNTLIGGFCRNG 514
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +A L+ L +S F+PD F +N+++ G
Sbjct: 515 NMDKAQELLEMLLESRFRPDIFTFNSLIDG 544
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PDIFT+N L+ LC+ + +M + PN++TY ILI + C
Sbjct: 526 LLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEM-VEWDVPPNVITYNILICSFCAIG 584
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + L+ + G +PD F +N +++GY
Sbjct: 585 DVSRSTHLLRQMKLHGIQPDTFSFNALIQGY 615
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ +C+ + + QM LG PN+ TYTILID N K E +
Sbjct: 262 PDRFTYNILIHGVCRLGVVDEALRLMKQMEG-LGYFPNVFTYTILIDGFFNAKRAGETFK 320
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + P+ +++ G
Sbjct: 321 VLQTMKERNVVPNEATMRSLVHG 343
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P YN ++ L K SL Y QM +S P+ TY ILI VC + EA
Sbjct: 225 LNPTTRLYNAVMDALIKSNSLDLAYLKFQQM-SSHNCVPDRFTYNILIHGVCRLGVVDEA 283
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+RL+ + G+ P+ F Y ++ G+
Sbjct: 284 LRLMKQMEGLGYFPNVFTYTILIDGF 309
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP++ TYN L+ C ++ + + QM+ GI+P+ ++ LI ++A
Sbjct: 566 VPPNVITYNILICSFCAIGDVSRSTHLLRQMKLH-GIQPDTFSFNALIQGYTGKNRFQKA 624
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+L ++ G +PD + Y ++K
Sbjct: 625 EKLFDSMLRLGIQPDNYTYGALIK 648
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TY L++ L K + ++D++ + G+ N+ +Y ++ID +C K++ A
Sbjct: 428 PGFSTYLTLIEALYKAGKMEIGNRYMDRL-INDGLISNIYSYNMVIDCLCKGKSMDRASE 486
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L + G P+ YNT++ G+
Sbjct: 487 MFRDLHNRGISPNIVTYNTLIGGF 510
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD F++N L++ D M LGI+P+ TY LI ++C + +A
Sbjct: 601 IQPDTFSFNALIQGYTGKNRFQKAEKLFDSM-LRLGIQPDNYTYGALIKSLCKSGRHDKA 659
Query: 66 MRLVSALSDSGFKPDCF 82
+ ++ ++G PD +
Sbjct: 660 REIFLSMKENGCTPDSY 676
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD T+N +V LC+ + V+QM + G P++VTY +ID +CN + +AM
Sbjct: 493 PPDEVTFNTVVASLCQKGLVDRAIRVVEQMSEN-GCSPDIVTYNCIIDGLCNESCIDDAM 551
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+S L G KPD +NT++KG
Sbjct: 552 ELLSDLQSCGCKPDIVTFNTLLKG 575
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TY+ L+ CK +D+MRA G +P++VTY +LI+ +CN
Sbjct: 277 MLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAK-GCEPDIVTYNVLINAMCNEG 335
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++ EA+ ++S L G KPD Y ++K
Sbjct: 336 DVDEALNILSNLPSHGCKPDAVTYTPVLK 364
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD FT+N L++ LC + D M G P++VTY+IL+D C R+A
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDM-LHRGCSPSVVTYSILLDATCKESGYRQA 305
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M L+ + G +PD YN ++
Sbjct: 306 MALLDEMRAKGCEPDIVTYNVLI 328
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N +V LC+ + VD M + G ++VTY+ ++D +C+ + +A+
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHM-SEHGCVADIVTYSSILDGLCDVGRVDDAVE 447
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+S L G KPD Y T++KG
Sbjct: 448 LLSRLKSYGCKPDTIAYTTVLKG 470
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN L+ +C + N + + S G KP+ VTYT ++ ++C ++ +
Sbjct: 315 KGCEPDIVTYNVLINAMCNEGDVDEALNILSNL-PSHGCKPDAVTYTPVLKSLCGSERWK 373
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E L++ ++ + PD +NTI+
Sbjct: 374 EVEELLAEMTSNNCAPDEVTFNTIV 398
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ L K + + + M S G+ P+ TY L VC A+R
Sbjct: 667 PDLITYNTVISNLTKAGKMEEALDLLRVM-VSNGLCPDTTTYRSLAYGVCREDGTDRAVR 725
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D+G PD YN ++ G+
Sbjct: 726 MLRRVQDTGLSPDTTFYNDVLLGF 749
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LC + + ++ S G KP++VT+ L+ +C +A +
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQ-SCGCKPDIVTFNTLLKGLCGVDRWEDAEQ 587
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + S PD +NT++
Sbjct: 588 LMANMMRSNCPPDELTFNTVI 608
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD T+N ++ LC+ LT + M A G PN TY+I++D + + A+
Sbjct: 598 PPDELTFNTVITSLCQKGLLTQAIETLKIM-AENGCVPNSSTYSIVVDALLKAGKAQAAL 656
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+S +++ PD YNT++
Sbjct: 657 ELLSGMTNG--TPDLITYNTVI 676
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TY+ ++ LC + + +++ S G KP+ + YT ++ +C+T+ A L
Sbjct: 425 DIVTYSSILDGLCDVGRVDDAVELLSRLK-SYGCKPDTIAYTTVLKGLCSTEQWERAEEL 483
Query: 69 VSALSDSGFKPDCFVYNTIM 88
++ + S PD +NT++
Sbjct: 484 MAEMLCSDCPPDEVTFNTVV 503
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+K LC ++ +++ A+LG +VTY +++ C + +A R
Sbjct: 185 PPVVPCNILIKRLCSDGRVSDA----ERVFAALGPSATVVTYNTMVNGYCRAGRIEDARR 240
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + F PD F +N +++
Sbjct: 241 LINGMP---FPPDTFTFNPLIRA 260
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IF YN L+ LCK R+ D+M +G+ PN VTY+ILID C L A+
Sbjct: 365 PNIFVYNALIDSLCKGRNFDEAELLFDRM-GKIGLCPNDVTYSILIDMFCRRGKLDTALS 423
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G KP + YN+++ G+
Sbjct: 424 FLGEMIDMGLKPSVYPYNSLINGH 447
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K L + TYN L++ C+ + + +M G+ P+ +TYT +I +C +
Sbjct: 779 ILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGD-GVSPDCITYTTMISELCRRND 837
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ L +++++ G +PD YNT++ G
Sbjct: 838 VKKAIELWNSMTEKGIRPDRVAYNTLIHG 866
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++ Y +++ LC+ + L+ + QM A+ G N+V Y +LID +C + + EA+
Sbjct: 225 PDVYIYTGVIRSLCELKDLSRAKEMIVQMEAT-GCDVNIVPYNVLIDGLCKKQKVWEAVG 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L+ KPD Y T++ G
Sbjct: 284 IKKDLAGKELKPDVVTYCTLVCG 306
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L PD+ TY LV LCK + +D+M L P+ + L++ + +
Sbjct: 291 KELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEM-LRLRFSPSEAAVSSLVEGLRKRGKVE 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ LV +++ G P+ FVYN ++
Sbjct: 350 EALNLVKRVAEFGVSPNIFVYNALI 374
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P ++ YN L+ CK ++ + + +M + ++P +VTYT L+ C+ + +A
Sbjct: 433 LKPSVYPYNSLINGHCKFGDISAAESLMAEM-INKKLEPTVVTYTSLMGGYCSKGKINKA 491
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+RL ++ G P + + T++ G
Sbjct: 492 LRLYHEMTGKGIVPSIYTFTTLLSG 516
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ C+ L T +F+ +M +G+KP++ Y LI+ C ++ A
Sbjct: 398 LCPNDVTYSILIDMFCRRGKLDTALSFLGEM-IDMGLKPSVYPYNSLINGHCKFGDISAA 456
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + +P Y ++M GY
Sbjct: 457 ESLMAEMINKKLEPTVVTYTSLMGGY 482
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I+T+ L+ L + + +M A +KPN VTY ++I+ C N+
Sbjct: 501 KGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEM-AEWNVKPNRVTYNVMIEGYCEEGNMS 559
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A ++ + + G PD + Y ++ G
Sbjct: 560 KAFEFLNEMIEKGIVPDTYSYRPLIHG 586
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L P + TY L+ C + +M GI P++ T+T L+ +
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK-GIVPSIYTFTTLLSGLFRAG 521
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+A++L + +++ KP+ YN +++GY
Sbjct: 522 LIRDAVKLFTEMAEWNVKPNRVTYNVMIEGY 552
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 1 LIFK------QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
L+FK L P++ T + L+ L K R D M ++GI+P++ YT +I
Sbjct: 177 LVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDM-INVGIRPDVYIYTGVIR 235
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++C K+L A ++ + +G + YN ++ G
Sbjct: 236 SLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDG 271
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD TY ++ LC+ + + M GI+P+ V Y LI C
Sbjct: 813 MIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEK-GIRPDRVAYNTLIHGCCVAG 871
Query: 61 NLREAMRLVSALSDSGFKPD 80
+ +A L + + G KP+
Sbjct: 872 EMGKATELRNEMLRQGLKPN 891
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD ++Y L+ LC + FVD + + N + YT L+ C
Sbjct: 568 MIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKG-NCELNEICYTGLLHGFCREG 626
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA+ + + G D Y ++ G
Sbjct: 627 KLEEALSVCQDMGLRGVDLDLVCYGVLIDG 656
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PPD T+N ++ LC+ + V+QM + G P++VTY +ID +CN +
Sbjct: 398 MVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSEN-GCNPDIVTYNSIIDGLCNER 456
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L+S L G KPD +NT++KG
Sbjct: 457 CIDDAMELLSNLQSYGCKPDIVTFNTLLKG 486
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TY+ L+ CK +D+MRA G +P++VTY +LI+ +CN
Sbjct: 188 MLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAK-GCEPDIVTYNVLINAMCNEG 246
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++ EA+ ++S L G KPD Y ++K
Sbjct: 247 DVDEALNILSDLPSHGCKPDAVTYTPVLK 275
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 6 LPPDIFTYNFLVKCLC-KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
PPD FT+N L++ LC + R + F D + G P++VTY+IL+D C R+
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHR--GCSPSVVTYSILLDATCKASGYRQ 215
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
AM L+ + G +PD YN ++
Sbjct: 216 AMVLLDEMRAKGCEPDIVTYNVLI 239
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N +V LC+ + VD M + G P++VTY+ ++D +C+ + +A+
Sbjct: 300 PDEVTFNTIVTSLCQQGLVDRAIKVVDHM-SEHGCIPDIVTYSSILDGLCDVGRVDDAVE 358
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+S L G KPD Y T++KG
Sbjct: 359 LLSRLKSYGCKPDTIAYTTVLKG 381
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN L+ +C + N + + S G KP+ VTYT ++ ++C ++ +
Sbjct: 226 KGCEPDIVTYNVLINAMCNEGDVDEALNILSDL-PSHGCKPDAVTYTPVLKSLCGSERWK 284
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E L + ++ + PD +NTI+
Sbjct: 285 EVEELFAEMASNKCAPDEVTFNTIV 309
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ + K + + + M S G+ P+ +TY L +C A+R
Sbjct: 578 PDLITYNTVISNITKAGKMEEALDLLRVM-VSNGLSPDTITYRSLAYGICREDGTDRAIR 636
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ L D G PD YN I+ G+
Sbjct: 637 MLCRLQDMGLSPDATFYNDILLGF 660
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LC R + + ++ S G KP++VT+ L+ +C+ +A +
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQ-SYGCKPDIVTFNTLLKGLCSVDRWEDAEQ 498
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + S PD +NT++
Sbjct: 499 LMVNMMHSDCPPDATTFNTVI 519
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PPD T+N ++ LC+ L + M A G PN TY I++D +
Sbjct: 503 MMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIM-AENGCIPNQSTYNIVVDALLKAG 561
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA++L+S +++ PD YNT++
Sbjct: 562 KTQEALKLLSGMTNG--TPDLITYNTVI 587
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++K LC V +M AS P+ VT+ ++ ++C + A++
Sbjct: 265 PDAVTYTPVLKSLCGSERWKEVEELFAEM-ASNKCAPDEVTFNTIVTSLCQQGLVDRAIK 323
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V +S+ G PD Y++I+ G
Sbjct: 324 VVDHMSEHGCIPDIVTYSSILDG 346
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K LP + N L+K LC + +++ A+LG +VTY +++ C +
Sbjct: 92 KCLPLPVVPCNILIKRLCSGGRVADA----ERVFATLGASATVVTYNTMVNGYCRAGRIE 147
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A RL+S + F PD F +N +++
Sbjct: 148 DARRLISGMP---FPPDTFTFNPLIRA 171
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ ++ LC + + +++ S G KP+ + YT ++ +C+ + A
Sbjct: 335 PDIVTYSSILDGLCDVGRVDDAVELLSRLK-SYGCKPDTIAYTTVLKGLCSIEQWEHAEE 393
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + S PD +NT++
Sbjct: 394 LMAEMVCSDCPPDEVTFNTVI 414
>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Cucumis sativus]
Length = 697
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI L +I++YN ++ CLCK +S+ + + GI PN+VTY LI C
Sbjct: 465 LINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLH-NRGISPNIVTYNTLIGGFCRNG 523
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +A L+ L +S F+PD F +N+++ G
Sbjct: 524 NMDKAQELLEMLLESRFRPDIFTFNSLIDG 553
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PDIFT+N L+ LC+ + +M + PN++TY ILI + C
Sbjct: 535 LLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEM-VEWDVPPNVITYNILICSFCAIG 593
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + L+ + G +PD F +N +++GY
Sbjct: 594 DVSRSTHLLRQMKLHGIQPDTFSFNALIQGY 624
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ +C+ + + QM LG PN+ TYTILID N K EA +
Sbjct: 262 PDRFTYNILIHGVCRLGVVDEALRLMKQMEG-LGYFPNVFTYTILIDGFFNAKRAGEAFK 320
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + P+ +++ G
Sbjct: 321 VLQTMKERNVVPNEATMRSLVHG 343
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P YN ++ L K SL Y QM +S P+ TY ILI VC + EA
Sbjct: 225 LNPTTRLYNAVMDALIKSNSLDLAYLKFQQM-SSHNCVPDRFTYNILIHGVCRLGVVDEA 283
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+RL+ + G+ P+ F Y ++ G+
Sbjct: 284 LRLMKQMEGLGYFPNVFTYTILIDGF 309
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP++ TYN L+ C ++ + + QM+ GI+P+ ++ LI ++A
Sbjct: 575 VPPNVITYNILICSFCAIGDVSRSTHLLRQMKLH-GIQPDTFSFNALIQGYTGKNRFQKA 633
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+L ++ G +PD + Y ++K
Sbjct: 634 EKLFDSMLRLGIQPDNYTYGALIK 657
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TY L++ L K + ++D++ + G+ N+ +Y ++ID +C K++ A
Sbjct: 437 PGFSTYLTLIEALYKAGKMEIGNRYMDRL-INDGLISNIYSYNMVIDCLCKGKSMDRASE 495
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L + G P+ YNT++ G+
Sbjct: 496 MFRDLHNRGISPNIVTYNTLIGGF 519
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD F++N L++ D M LGI+P+ TY LI ++C + +A
Sbjct: 610 IQPDTFSFNALIQGYTGKNRFQKAEKLFDSM-LRLGIQPDNYTYGALIKSLCKSGRHDKA 668
Query: 66 MRLVSALSDSGFKPDCF 82
+ ++ ++G PD +
Sbjct: 669 REIFLSMKENGCTPDSY 685
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + P+IF YN LV LCK + D M G++P+ VTY+ +ID C ++
Sbjct: 386 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK-GLEPDSVTYSTMIDGYCKSE 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ EA L + G +P FVYN ++ G
Sbjct: 445 NVAEAFSLFHEMPSKGVQPHSFVYNALVHG 474
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTY+ L+ CK + + D+M GI PN+ Y L+D +C + +++
Sbjct: 354 KGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK-GIAPNIFIYNALVDGLCKSGDIQ 412
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + + G +PD Y+T++ GY
Sbjct: 413 RARKLFDGMPEKGLEPDSVTYSTMIDGY 440
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P +Y ++ LC C+ L+ +++M S G+KPN+V Y+ LI + +
Sbjct: 144 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFS-GLKPNVVVYSTLIMGYASEGRIE 202
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA RL+ +S SG PD F YN I+
Sbjct: 203 EARRLLDGMSCSGVAPDIFCYNAII 227
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+ L++ C+ ++ +D+M + P+ V+Y +I+ +C+ K+L A +
Sbjct: 113 PNSRTFCLLIEGYCREHNMGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDLSLANK 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ SG KP+ VY+T++ GY
Sbjct: 172 LLEKMTFSGLKPNVVVYSTLIMGY 195
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIF YN ++ CL K + ++ +++ G+KP+ VT+ I T + EA +
Sbjct: 218 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEAAK 276
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ D G P+ +Y ++ G+
Sbjct: 277 YFDEMLDHGLMPNNPLYTVLINGH 300
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P ++ TYN L+ LCK + + M +LG KPN T+ +LI+ C N+ A
Sbjct: 76 IPINLITYNVLIHGLCKFGKMEKAAEILKGM-ITLGCKPNSRTFCLLIEGYCREHNMGRA 134
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + P Y ++ G
Sbjct: 135 LELLDEMEKRNLVPSAVSYGAMING 159
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ ++ CK ++ ++ +M S G++P+ Y L+ C ++
Sbjct: 424 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM-PSKGVQPHSFVYNALVHGCCKEGDME 482
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+AM L + GF +NT++ GY
Sbjct: 483 KAMNLFREMLQKGFA-TTLSFNTLIDGY 509
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ +TY + LC+ + + ++M+ + G+KP+ + LID ++
Sbjct: 4 KGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKT-GLKPDYNACSALIDGFMREGDID 62
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
E +R+ + G + YN ++ G
Sbjct: 63 EVLRIKDVMVSCGIPINLITYNVLIHG 89
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY ++ CK +L + D++ G+ + +LI +C +
Sbjct: 577 MVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGK-GMLTKGTIHDLLITALCKRE 635
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L EA +L+ + + G KP +T+++ +
Sbjct: 636 DLTEASKLLDEMGELGLKPSLAACSTLVRSF 666
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ Y L+ K +L + + A LG+ P++ T + I + ++EA
Sbjct: 286 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHA-LGVLPDVQTCSAFIHGLLKNGRVQEA 344
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ S L + G PD F Y++++ G+
Sbjct: 345 LKVFSELKEKGLVPDVFTYSSLISGF 370
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
++ L+ LCK LT +D+M LG+KP+L + L+ + + EA R+ +
Sbjct: 624 HDLLITALCKREDLTEASKLLDEM-GELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV 682
Query: 73 SDSGFKPD 80
G PD
Sbjct: 683 KSLGLVPD 690
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 18/85 (21%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKC---------------RSLT--TVYNFVDQMRASLGIK 43
+I KQ+ PD TY ++ CK R+L TV+ ++M A G+K
Sbjct: 525 MIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAK-GVK 583
Query: 44 PNLVTYTILIDNVCNTKNLREAMRL 68
P+ VTY ++I C NL EA +L
Sbjct: 584 PDEVTYGLVIYAHCKEDNLVEAFKL 608
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G+ PN TYTI+ +C K + EA + +G KPD + ++ G+
Sbjct: 5 GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGF 55
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD + L+ + + V D M S GI NL+TY +LI +C + +A
Sbjct: 41 LKPDYNACSALIDGFMREGDIDEVLRIKDVM-VSCGIPINLITYNVLIHGLCKFGKMEKA 99
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G KP+ + +++GY
Sbjct: 100 AEILKGMITLGCKPNSRTFCLLIEGY 125
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F ++P P F YN LV CK + N +M G L ++ LID
Sbjct: 452 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK-GFATTL-SFNTLIDGY 509
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C + ++EA +L + PD Y T++
Sbjct: 510 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVI 541
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD T+ + K +T + D+M G+ PN YT+LI+ NL
Sbjct: 249 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNNPLYTVLINGHFKAGNLM 307
Query: 64 EAMRLVSALSDSGFKPD 80
EA+ + L G PD
Sbjct: 308 EALSIFRHLHALGVLPD 324
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC+ + L +++M G+K ++VTY ILID +C R A +
Sbjct: 411 PNVSTYNCLIAGLCRKQDLQAAKELLNEMENK-GLKGDVVTYNILIDGLCKNDKSRNAEK 469
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + G KP+ YNT+M GY
Sbjct: 470 LLNEMFNLGLKPNHVTYNTLMDGY 493
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TYN L+ LC L + D+M LG+KPN+VTY LI+ C K ++
Sbjct: 302 QGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKM-VGLGLKPNIVTYNALINGFCKKKMMK 360
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ +S P+ +NT++ Y
Sbjct: 361 EATKVFDDVSKQELVPNVITFNTMIDAY 388
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ CK ++ ++M+ G+KPN+VTY LI+ +CN L EA+
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQ-GLKPNIVTYNSLINGLCNNGKLEEAID 329
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KP+ YN ++ G+
Sbjct: 330 LWDKMVGLGLKPNIVTYNALINGF 353
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D+ TYN L+ LCK +++M +LG+KPN VTY L+D C L+
Sbjct: 442 KGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEM-FNLGLKPNHVTYNTLMDGYCMEGKLK 500
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ + + + +P+ YN ++KGY
Sbjct: 501 AALNVRTRMEKERKQPNVVTYNVLIKGY 528
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P++ T+N ++ CK + ++ M GI PN+ TY LI +C ++L+
Sbjct: 372 QELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDE-GILPNVSTYNCLIAGLCRKQDLQ 430
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L++ + + G K D YN ++ G
Sbjct: 431 AAKELLNEMENKGLKGDVVTYNILIDG 457
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC--- 57
+I +++ ++ T+N + LC+ L + ++ M+A GI PN+VTY L+D C
Sbjct: 191 MIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKA-WGISPNVVTYNTLVDGYCKRG 249
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +A + + + P+ +NT++ G+
Sbjct: 250 SAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGF 283
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ C L N +M +PN+VTY +LI C L A
Sbjct: 479 LKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERK-QPNVVTYNVLIKGYCKINKLEAA 537
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
L++ + + G P+ Y+ +
Sbjct: 538 NGLLNEMLEKGLNPNRTTYDIV 559
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ + R + VY+ +++M G+K N VTY I++ +C N+ EA
Sbjct: 351 PDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKK-GVKCNAVTYNIILKWMCKKGNMTEATT 409
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + ++G PDC YNT++ Y
Sbjct: 410 TLDKMEENGLSPDCVTYNTLIGAY 433
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++K +CK ++T +D+M + G+ P+ VTY LI C + +A R++
Sbjct: 390 TYNIILKWMCKKGNMTEATTTLDKMEEN-GLSPDCVTYNTLIGAYCKAGKMGKAFRMMDE 448
Query: 72 LSDSGFKPDCFVYNTIM 88
++ G K D + NTI+
Sbjct: 449 MTSKGLKIDTWTLNTIL 465
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+Q+ P TYN ++ LC+ R + + +++M + G+ P+ TY I+I C N+
Sbjct: 522 RQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLEN-GLVPDETTYNIIIHGFCLEGNVE 580
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + + ++ FKPD + N +++G
Sbjct: 581 KAFQFHNEMIENLFKPDVYTCNILLRG 607
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P ++TYN LV C + + D+M + + P++VTY LID ++ E
Sbjct: 314 LLPTVWTYNMLVNGFCNDGKIDEAFRIRDEME-KMNVLPDVVTYNTLIDGCSQWRDSSEV 372
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
L+ + G K + YN I+K
Sbjct: 373 YSLIEEMDKKGVKCNAVTYNIILK 396
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN ++ L K R L + + M+ S G+ PN TY +L+ C L+EA +
Sbjct: 246 PDTVSYNTILDALLKRRLLQEARDLLLDMK-SKGLSPNKHTYNMLVCGYCRLGLLKEATK 304
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ ++ + P + YN ++ G+
Sbjct: 305 VIEIMTRNNLLPTVWTYNMLVNGF 328
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ TYN LV C+ L ++ M + + P + TY +L++ CN +
Sbjct: 277 KGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRN-NLLPTVWTYNMLVNGFCNDGKID 335
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA R+ + PD YNT++ G
Sbjct: 336 EAFRIRDEMEKMNVLPDVVTYNTLIDG 362
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ CK + + +D+M S G+K + T ++ +C K L EA
Sbjct: 419 LSPDCVTYNTLIGAYCKAGKMGKAFRMMDEM-TSKGLKIDTWTLNTILHCLCVEKKLDEA 477
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + S G+ D Y ++ GY
Sbjct: 478 YNLLCSASKRGYILDEVSYGILILGY 503
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ K N D+M+ I P+ +TY +I +C ++ + +A+
Sbjct: 492 DEVSYGILILGYFKDEKGDRALNLWDEMKER-QIMPSTITYNSVIGGLCQSRKVDQAIDK 550
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G PD YN I+ G+
Sbjct: 551 LNEMLENGLVPDETTYNIIIHGF 573
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K D+ TYN ++ LCK Y+ + +M A + P+ TY ++I + +
Sbjct: 624 LVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAK-KLGPDQYTYKVIIAALTDAG 682
Query: 61 NLREAMRLVSALSDSGFKPD 80
++EA + +SG D
Sbjct: 683 RIKEAEEFTLKMVESGIVHD 702
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ ++N L+ C + ++V++M + G P+ V+Y ++D + + L+EA
Sbjct: 211 PNTNSFNILIYGYCLESKVKDALDWVNKM-SEFGCVPDTVSYNTILDALLKRRLLQEARD 269
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G P+ YN ++ GY
Sbjct: 270 LLLDMKSKGLSPNKHTYNMLVCGY 293
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS--LGIKPNLVTYTILIDNVCNTKNLREA 65
P++ T N L+ L + S +++ ++ S LG+ PN ++ ILI C +++A
Sbjct: 173 PNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDA 232
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ V+ +S+ G PD YNTI+
Sbjct: 233 LDWVNKMSEFGCVPDTVSYNTIL 255
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++T N L++ LC+ L + + S G ++VTY +I ++C A
Sbjct: 596 PDVYTCNILLRGLCREGMLEKALKLFNTL-VSKGKDIDVVTYNTIISSLCKEGKFENAYD 654
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + PD + Y I+
Sbjct: 655 LLTEMEAKKLGPDQYTYKVII 675
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD++T+N LV CK ++ VD+M G PN+VTY+ ++D +C T
Sbjct: 288 MISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDR-GQPPNIVTYSSILDALCKTH 346
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L++ L D G +P+ Y ++ G
Sbjct: 347 RVDKAVALLTKLKDQGIRPNMHTYTILIDG 376
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+I TY+ ++ LCK + + +++ GI+PN+ TYTILID +C + L +A
Sbjct: 329 PPNIVTYSSILDALCKTHRVDKAVALLTKLKDQ-GIRPNMHTYTILIDGLCTSGKLEDAR 387
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ L G+ Y + G+
Sbjct: 388 NIFEDLLVKGYDITVVTYIVMFYGF 412
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ Y+ ++ +CK + + ++ +M S GI PN+VTY+ LI L+
Sbjct: 221 KLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEM-VSKGISPNVVTYSALISGFFTVGKLK 279
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L + + KPD + +N ++
Sbjct: 280 DAVDLFNKMISENIKPDVYTFNILV 304
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+ L+K LC + NF D++ A LG + N ++Y LID +C R A+
Sbjct: 155 PNTITFTTLIKGLCLKGQIHQALNFHDKLVA-LGFQFNQISYGTLIDGLCKVGETRAALD 213
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +P+ +Y+TI+ G
Sbjct: 214 LLRRVDGKLVQPNVVMYSTIIDG 236
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ LCK + + ++ L ++PN+V Y+ +ID +C K++ +A L S
Sbjct: 194 SYGTLIDGLCKVGETRAALDLLRRVDGKL-VQPNVVMYSTIIDGMCKDKHVNDAFDLYSE 252
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y+ ++ G+
Sbjct: 253 MVSKGISPNVVTYSALISGF 272
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ + P++ N L+ C C+ + ++ ++ +G PN +T+T LI +C +
Sbjct: 115 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKI-LKMGYNPNTITFTTLIKGLCLKGQI 173
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L GF+ + Y T++ G
Sbjct: 174 HQALNFHDKLVALGFQFNQISYGTLIDG 201
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ +Q P P +N ++ L K + TV +M GIKPNLV ILI+ C
Sbjct: 78 LLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFR-GIKPNLVNCNILINCFCQLG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + + G+ P+ + T++KG
Sbjct: 137 LIPFAFSVFAKILKMGYNPNTITFTTLIKG 166
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LC L N + + G +VTY ++ C EA
Sbjct: 365 PNMHTYTILIDGLCTSGKLEDARNIFEDLLVK-GYDITVVTYIVMFYGFCKKGLFDEASA 423
Query: 68 LVSALSDSGFKPDCFVYNTI 87
L+S + ++G PD Y I
Sbjct: 424 LLSKMEENGCIPDAKTYELI 443
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+K LC + N V +M + GIKPN+ TYT+LID++C+ +A
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEET-GIKPNIHTYTVLIDSLCSQCKFEKARE 379
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G P+ YN ++ GY
Sbjct: 380 LLGQMLEKGLMPNVITYNALINGY 403
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ PD+ TYN L+ C+ + + Y + M G+ P+ TYT +ID++C +K
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR-GLVPDQWTYTSMIDSLCKSK 511
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L +L G P+ +Y ++ GY
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVMYTALIDGY 542
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + T L+ L K Y+ QM +S G KP+ TYT I C L +A
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS-GTKPDAHTYTTFIQTYCREGRLLDA 656
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + ++G PD F Y++++KGY
Sbjct: 657 EDMMAKMRENGVSPDLFTYSSLIKGY 682
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD +TY ++ LCK + + + D + G+ PN+V YT LID C +
Sbjct: 491 RGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK-GVNPNVVMYTALIDGYCKAGKVD 549
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + P+ +N ++ G
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHG 576
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+I TY L+ LC + QM G+ PN++TY LI+ C + +A
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEK-GLMPNVITYNALINGYCKRGMIEDA 412
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +V + P+ YN ++KGY
Sbjct: 413 VDVVELMESRKLSPNTRTYNELIKGY 438
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P++ TYN L+ CK + + V+ M S + PN TY LI C +
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME-SRKLSPNTRTYNELIKGYCKS- 441
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +AM +++ + + PD YN+++ G
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDG 471
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD FTY L+ C+ + L + + ++M G + N V YT LI +C +
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK-GCRRNEVAYTHLIHGLCVAR 302
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EAM L + D P Y ++K
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIK 331
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRA------SLGIKPNLVTYTILIDNVCNTKNLRE 64
Y ++ C + + VD+M+ + PN+ TY +++ C N+ E
Sbjct: 177 LKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEE 236
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + VS + ++G PD F Y +++ GY
Sbjct: 237 ANQYVSKIVEAGLDPDFFTYTSLIMGY 263
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I+TYN +V CK ++ +V ++ G+ P+ TYT LI C K+L A +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKI-VEAGLDPDFFTYTSLIMGYCQRKDLDSAFK 274
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G + + Y ++ G
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHG 297
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ T+N L+ LC L +++ +G++P + T TILI +
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEA-TLLEEKMVKIGLQPTVSTDTILIHRLLKDG 616
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A + SG KPD Y T ++ Y
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ C+ L + + +MR + G+ P+L TY+ LI + A
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDAEDMMAKMREN-GVSPDLFTYSSLIKGYGDLGQTNFAFD 693
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + D+G +P + +++K
Sbjct: 694 VLKRMRDTGCEPSQHTFLSLIK 715
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ +Y L+ +C+ +L D M+ + GI P+ + + L+ C K
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLK 810
Query: 61 NLREAMRLVSALSDSGFKP 79
EA ++V + G P
Sbjct: 811 KHNEAAKVVDDMICVGHLP 829
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L PD TY+ L++ LC+ N +M +S G+ P+L+TY+ L+D +C +L
Sbjct: 401 KELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSS-GLLPDLMTYSTLLDGLCKHGHLD 459
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L+ ++ +S +PD +YN +++G
Sbjct: 460 EALKLLKSMQESKIEPDIVLYNILIEG 486
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ +Y+ ++ LCK + + + +M G KPNLV YT +ID++C
Sbjct: 188 MVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEK-GCKPNLVAYTTIIDSLCKDT 246
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +AM L+S + D G PD Y+TI+ G+
Sbjct: 247 LVNDAMDLLSEMVDRGIPPDVVTYSTILHGF 277
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD+ TY+ ++ C L ++M + PN VT+TIL+D +C
Sbjct: 258 MVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEM-VGRNVMPNTVTFTILVDGLCKEG 316
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + A++ G +P+ + YN +M GY
Sbjct: 317 MVSEARCVFEAMTKKGAEPNAYTYNALMDGY 347
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++++ N L+ CLC+ + + + +M LGI+P+ +T+ LI+ C ++EA+ L
Sbjct: 126 NVYSLNILINCLCRLNHVVFAISVLGKM-FKLGIQPDAITFNTLINGRCIEGEIKEAVGL 184
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G +PD Y+T++ G
Sbjct: 185 FNEMVRRGHQPDVISYSTVING 206
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + +YN L+ CK R L + + +M + + P+ VTY+ L+ +C
Sbjct: 363 MVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEM-SEKELTPDTVTYSTLMQGLCQVG 421
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA+ L + SG PD Y+T++ G
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLLDG 451
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PDI YN L++ + L ++ A GI+P + TYTI+I + E
Sbjct: 472 KIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFAD-GIQPTIRTYTIMIKGLLKEGLSDE 530
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + D GF P+ YN I++G+
Sbjct: 531 AYELFRKMEDDGFLPNSCSYNVIIQGF 557
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ +TYN L+ C + +D M G P + +Y ILI+ C + L
Sbjct: 331 KGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIM-VDKGCAPVVHSYNILINGYCKRRRLD 389
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L+ +S+ PD Y+T+M+G
Sbjct: 390 EAKSLLVEMSEKELTPDTVTYSTLMQG 416
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+ T+ LV LCK + + V + G +PN TY L+D C
Sbjct: 293 MVGRNVMPNTVTFTILVDGLCK-EGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNN 351
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +++ + D G P YN ++ GY
Sbjct: 352 QMDEAQKVLDIMVDKGCAPVVHSYNILINGY 382
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD T+N L+ C + ++M G +P++++Y+ +I+ +C + N A
Sbjct: 158 IQPDAITFNTLINGRCIEGEIKEAVGLFNEM-VRRGHQPDVISYSTVINGLCKSGNTSMA 216
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L+ + + G KP+ Y TI+
Sbjct: 217 LQLLRKMEEKGCKPNLVAYTTII 239
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + + + + K + +TV + +QM G+ N+ + ILI+ +C ++ A+
Sbjct: 90 PSVVEFGRFLGSIAKKKQYSTVVSLCNQMDL-FGVTHNVYSLNILINCLCRLNHVVFAIS 148
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G +PD +NT++ G
Sbjct: 149 VLGKMFKLGIQPDAITFNTLING 171
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ YN L+ C+ + +D+M G+ PN VTY +ID C +
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK-GLHPNAVTYCTIIDGYCKSG 711
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L EA RL + G PD FVY T++ G
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY +VK +C L YN V +M AS G +PN+V YT LI +AMR++
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIAS-GCRPNVVIYTTLIKTFLQNSRFGDAMRVLK 476
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G PD F YN+++ G
Sbjct: 477 EMKEQGIAPDIFCYNSLIIG 496
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+F+Y L+ K ++ + D+M G+ PN++ Y +L+ C + +
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM-VEEGLTPNVIIYNMLLGGFCRSGEIE 679
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ +S G P+ Y TI+ GY
Sbjct: 680 KAKELLDEMSVKGLHPNAVTYCTIIDGY 707
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + D TY L+ L K + +MR GI P++ +Y +LI+
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAPDVFSYGVLINGFSKLG 641
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+++A + + + G P+ +YN ++ G+
Sbjct: 642 NMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L P +TY+ L+ LCK + L + + +M SLG+ + TY++LID + +
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMD-SLGVSLDNHTYSLLIDGLLKGR 326
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
N A LV + G ++Y+
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYD 351
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P+ FTY + + + +V +MR G+ PN V T LI+ C +
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKE 571
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA ++ D G D Y +M G
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KPN VTY I+ID +C NL A L + ++ P Y +++ GY
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PDIF YN L+ L K + + +F+ +M + G+KPN TY I
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFA 539
Query: 64 EAMRLVSALSDSGFKPD 80
A + V + + G P+
Sbjct: 540 SADKYVKEMRECGVLPN 556
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV----TYTILIDNV 56
+I L P Y L++ C+ +++ Y + +M+ K N+V TY ++ +
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK-----KRNIVISPYTYGTVVKGM 427
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C++ +L A +V + SG +P+ +Y T++K +
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTF 462
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK +L QM+ + + P ++TYT L++ E
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +G +PD +Y+ I+ +
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAF 885
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ TY ++ CK L + D+M+ G+ P+ YT L+D C ++
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVE 749
Query: 64 EAM 66
A+
Sbjct: 750 RAI 752
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ YN L+ C+ + +D+M G+ PN VTY +ID C +
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK-GLHPNAVTYCTIIDGYCKSG 711
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L EA RL + G PD FVY T++ G
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY +VK +C L YN V +M AS G +PN+V YT LI +AMR++
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIAS-GCRPNVVIYTTLIKTFLQNSRFGDAMRVLK 476
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G PD F YN+++ G
Sbjct: 477 EMKEQGIAPDIFCYNSLIIG 496
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+F+Y L+ K ++ + D+M G+ PN++ Y +L+ C + +
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM-VEEGLTPNVIIYNMLLGGFCRSGEIE 679
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ +S G P+ Y TI+ GY
Sbjct: 680 KAKELLDEMSVKGLHPNAVTYCTIIDGY 707
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + D TY L+ L K + +MR GI P++ +Y +LI+
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAPDVFSYGVLINGFSKLG 641
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+++A + + + G P+ +YN ++ G+
Sbjct: 642 NMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L P +TY+ L+ LCK + L + + +M SLG+ + TY++LID + +
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMD-SLGVSLDNHTYSLLIDGLLKGR 326
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
N A LV + G ++Y+
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYD 351
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KPN VTY I+ID +C NL A L + ++ P Y +++ GY
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P+ FTY + + + +V +MR G+ PN V T LI+ C
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKG 571
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA ++ D G D Y +M G
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PDIF YN L+ L K + + +F+ +M + G+KPN TY I
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFA 539
Query: 64 EAMRLVSALSDSGFKPD 80
A + V + + G P+
Sbjct: 540 SADKYVKEMRECGVLPN 556
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV----TYTILIDNV 56
+I L P Y L++ C+ +++ Y + +M+ K N+V TY ++ +
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK-----KRNIVISPYTYGTVVKGM 427
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C++ +L A +V + SG +P+ +Y T++K +
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTF 462
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK +L QM+ + + P ++TYT L++ E
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +G +PD +Y+ I+ +
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAF 885
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ TY ++ CK L + D+M+ G+ P+ YT L+D C ++
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVE 749
Query: 64 EAM 66
A+
Sbjct: 750 RAI 752
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ YN L+ C+ + +D+M G+ PN VTY +ID C +
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK-GLHPNAVTYCTIIDGYCKSG 711
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L EA RL + G PD FVY T++ G
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY +VK +C L YN V +M AS G +PN+V YT LI +AMR++
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIAS-GCRPNVVIYTTLIKTFLQNSRFGDAMRVLK 476
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G PD F YN+++ G
Sbjct: 477 EMKEQGIAPDIFCYNSLIIG 496
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+F+Y L+ K ++ + D+M G+ PN++ Y +L+ C + +
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM-VEEGLTPNVIIYNMLLGGFCRSGEIE 679
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ +S G P+ Y TI+ GY
Sbjct: 680 KAKELLDEMSVKGLHPNAVTYCTIIDGY 707
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + D TY L+ L K + +MR GI P++ +Y +LI+
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAPDVFSYGVLINGFSKLG 641
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+++A + + + G P+ +YN ++ G+
Sbjct: 642 NMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L P +TY+ L+ LCK + L + + +M SLG+ + TY++LID + +
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMD-SLGVSLDNHTYSLLIDGLLKGR 326
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
N A LV + G ++Y+
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYD 351
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KPN VTY I+ID +C NL A L + ++ P Y +++ GY
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P+ FTY + + + +V +MR G+ PN V T LI+ C
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKG 571
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA ++ D G D Y +M G
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PDIF YN L+ L K + + +F+ +M + G+KPN TY I
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFA 539
Query: 64 EAMRLVSALSDSGFKPD 80
A + V + + G P+
Sbjct: 540 SADKYVKEMRECGVLPN 556
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV----TYTILIDNV 56
+I L P Y L++ C+ +++ Y + +M+ K N+V TY ++ +
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK-----KRNIVISPYTYGTVVKGM 427
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C++ +L A +V + SG +P+ +Y T++K +
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTF 462
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK +L QM+ + + P ++TYT L++ E
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +G +PD +Y+ I+ +
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAF 885
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ TY ++ CK L + D+M+ G+ P+ YT L+D C ++
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVE 749
Query: 64 EAM 66
A+
Sbjct: 750 RAI 752
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP++ T N LV +CK + F ++M+ G+K N VTYT LI CN N+ +A
Sbjct: 447 VPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGK-GLKGNAVTYTALIRAFCNVNNIEKA 505
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M L + ++G PD VY T++ G
Sbjct: 506 MELFDEMLEAGCSPDAIVYYTLISG 530
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 39/83 (46%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK V++MR+ PN VTY LID C + A
Sbjct: 378 PDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARE 437
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ G P+ NT++ G
Sbjct: 438 LFDQMNKDGVPPNVVTLNTLVDG 460
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI ++N L+ C+ L Y + +M + GIKP+ VTY LI + T + A R
Sbjct: 554 PDIVSFNVLINGFCRKNKLDEAYEMLKEMENA-GIKPDGVTYNTLISHFSKTGDFSTAHR 612
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G P Y ++ Y
Sbjct: 613 LMKKMVKEGLVPTVVTYGALIHAY 636
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ L + L + +M+ + G P++V++ +LI+ C L EA
Sbjct: 519 PDAIVYYTLISGLSQAGKLDRASFVLSKMKEA-GFSPDIVSFNVLINGFCRKNKLDEAYE 577
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G KPD YNT++ +
Sbjct: 578 MLKEMENAGIKPDGVTYNTLISHF 601
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ CK + DQM G+ PN+VT L+D +C + A+
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKD-GVPPNVVTLNTLVDGMCKHGRINGAVE 472
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G K + Y +++ +
Sbjct: 473 FFNEMQGKGLKGNAVTYTALIRAF 496
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P + TY L+ C +L M ++ + PN V Y ILI+++C
Sbjct: 617 MVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKN 676
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L+ + G KP+ +N + KG
Sbjct: 677 QVDLALSLMDDMKVKGVKPNTNTFNAMFKG 706
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ K +T + + +M G+ P +VTY LI C NL EA
Sbjct: 587 IKPDGVTYNTLISHFSKTGDFSTAHRLMKKM-VKEGLVPTVVTYGALIHAYCLNGNLDEA 645
Query: 66 MRLVSALSD-SGFKPDCFVYNTIM 88
M++ +S S P+ +YN ++
Sbjct: 646 MKIFRDMSSTSKVPPNTVIYNILI 669
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG----IKPNLVTYTILIDNVCNTKN 61
+ P++ T+ L+ LCK R + ++M ++P+++TY LID +C
Sbjct: 336 IQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGR 395
Query: 62 LREAMRLVSAL-SDSGFKPDCFVYNTIMKGY 91
E + LV + S P+ YN ++ GY
Sbjct: 396 QEEGLGLVERMRSQPRCMPNTVTYNCLIDGY 426
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L + R + + +M+ + I+PN+VT+ ILI+++C + + EA+ + ++
Sbjct: 309 NALLTALGRAREFKRMNTLLAEMK-EMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMN 367
Query: 74 ---DSGF--KPDCFVYNTIMKG 90
+GF +PD YNT++ G
Sbjct: 368 GGESNGFLVEPDVITYNTLIDG 389
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP+ YN L+ LC+ + + +D M+ G+KPN T+ + + L +
Sbjct: 657 KVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVK-GVKPNTNTFNAMFKGLQEKNWLSK 715
Query: 65 AMRLVSALSDSGFKPD 80
A L+ +++ PD
Sbjct: 716 AFELMDRMTEHACNPD 731
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TY L+ +CK ++ F+DQMR G+ PN TYT L+D + EA
Sbjct: 341 LSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++ + D+GF P YN ++ G+
Sbjct: 400 YRVLKEMIDNGFSPSVVTYNALINGH 425
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ Q+ P++FTYN L++ C +L F D+M G PN+VTY LID C +
Sbjct: 196 MLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKK-GCLPNVVTYNTLIDGYCKLR 254
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + L+ +++ G +P+ YN ++ G
Sbjct: 255 KIDDGFELLRSMALKGLEPNLISYNVVING 284
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK R + + + M A G++PNL++Y ++I+ +C ++E
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFELLRSM-ALKGLEPNLISYNVVINGLCREGRMKEISF 296
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ ++ G+ D YNT++KGY
Sbjct: 297 VLTEMNKRGYSLDEVTYNTLIKGY 320
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ C+ R + D+M +G+ P+ TYT LI+ C
Sbjct: 476 MVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEM-LRVGLPPDEFTYTALINAYCMEG 534
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L++A++L + + + G PD Y+ ++ G
Sbjct: 535 DLQKAIQLHNEMVEKGVLPDVVTYSVLING 564
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ +Y+ ++ C+ + +M A GIKP+ +TY+ LI C + +
Sbjct: 444 KGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAK-GIKPDTITYSSLIQGFCEQRRTK 502
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + G PD F Y ++ Y
Sbjct: 503 EACDLFDEMLRVGLPPDEFTYTALINAY 530
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD FTY L+ C L ++M G+ P++VTY++LI+ + REA
Sbjct: 516 LPPDEFTYTALINAYCMEGDLQKAIQLHNEM-VEKGVLPDVVTYSVLINGLNKQARTREA 574
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
RL+ L P Y+T+++
Sbjct: 575 KRLLLKLFYEESVPSDVTYHTLIE 598
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + +YN ++ + R+++ N +M S + PN+ TY ILI C NL A+
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLQS-QVSPNVFTYNILIRGFCLAGNLDVAL 225
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R + G P+ YNT++ GY
Sbjct: 226 RFFDRMEKKGCLPNVVTYNTLIDGY 250
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+K CK + +M G+ P+++TYT LI ++C N+ A
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRH-GLSPSVITYTSLIHSMCKAGNMNRATEF 367
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ Y T++ G+
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGF 390
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K L P++ +YN ++ LC+ + + + +M G + VTY LI C
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKR-GYSLDEVTYNTLIKGYCKEG 324
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N +A+ + + + G P Y +++
Sbjct: 325 NFHQALVMHAEMLRHGLSPSVITYTSLI 352
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TYN L+ LCK ++ + VD+M + GI +++TY LID +C ++
Sbjct: 368 KGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNN-GIPADILTYNSLIDVLCKNHHID 426
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ LV + D G +P + YN ++ G
Sbjct: 427 KAIALVKKIKDQGIQPSMYTYNILIDG 453
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD++T++ LV LCK ++T N + M G+ P++VTY+ L+D C
Sbjct: 260 MVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQ-GVIPDVVTYSSLMDGYCLVN 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A + S +S G P YN ++ G
Sbjct: 319 EVNKAKHVFSTMSRLGVAPHAHSYNIMING 348
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P DI TYN L+ LCK + V +++ GI+P++ TY ILID +C L+ A
Sbjct: 405 IPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQ-GIQPSMYTYNILIDGLCKGGRLKNA 463
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L G+ + + YN ++ G
Sbjct: 464 QDVFQDLLIKGYSVNAWTYNIMING 488
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ PD+ T+N L+ C L + +M I P++ T++IL+D +C
Sbjct: 225 MITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLK-NINPDVYTFSILVDALCKDG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A +++ + G PD Y+++M GY
Sbjct: 284 NITRAKNMLAVMMKQGVIPDVVTYSSLMDGY 314
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + P I T+N LV C C +T ++ ++ LG P +T+ LI+ +C
Sbjct: 85 LELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKI-LKLGYHPTTITFNTLINGICLNG 143
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L+EA+ + GF D Y T++ G
Sbjct: 144 KLKEALHFHDHVIALGFHLDQVSYRTLING 173
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P ++TYN L+ LCK L + + G N TY I+I+ +C
Sbjct: 438 QGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIK-GYSVNAWTYNIMINGLCKEGLFN 496
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L+S + ++G PD Y TI++
Sbjct: 497 EAEVLLSKMENNGIIPDAVTYETIIRA 523
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK + ++ L + ++V Y I+I+++C K + +A +L
Sbjct: 163 DQVSYRTLINGLCKIGETRAALQMLKKIEGKL-VNTDVVMYNIIINSLCKDKAVSDAYQL 221
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + PD +N+++ G+
Sbjct: 222 YSEMITKRISPDVVTFNSLILGF 244
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T+N L+ +C L +F D + A LG + V+Y LI+ +C R A++
Sbjct: 127 PTTITFNTLINGICLNGKLKEALHFHDHVIA-LGFHLDQVSYRTLINGLCKIGETRAALQ 185
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + D +YN I+
Sbjct: 186 MLKKIEGKLVNTDVVMYNIII 206
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRS--LTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P I +N ++ + K + TT + Q+ GI P +VT+ IL++ C+ + A
Sbjct: 55 PSIVEFNKILGSIVKANNNHYTTAISLSHQLELK-GITPTIVTFNILVNCYCHLGEMTFA 113
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + G+ P +NT++ G
Sbjct: 114 FSIFAKILKLGYHPTTITFNTLING 138
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ +YN L+K +CK ++ +++M A GIKPN V+Y ILI +C + +R+A+ L
Sbjct: 520 DVVSYNGLIKAMCKDGNVDRSLVLLEEM-AEKGIKPNNVSYNILISELCKERRVRDALEL 578
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G PD YNT++ G
Sbjct: 579 SKQMLNQGLAPDIVTYNTLING 600
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ +YN L+ LCK R + QM + G+ P++VTY LI+ +C +
Sbjct: 550 KGIKPNNVSYNILISELCKERRVRDALELSKQM-LNQGLAPDIVTYNTLINGLCKMGWMH 608
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L+ L + PD YN ++
Sbjct: 609 AALNLLEKLHNENVHPDIITYNILI 633
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN ++ LCK + + +MR S G P++ +Y +I ++CN + + EA + L
Sbjct: 419 YNGMIYALCKDGRMDEAMGLIQEMR-SQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 477
Query: 73 SDSGFKPDCFVYNTIM 88
+ G + YNTI+
Sbjct: 478 LEEGVVANGITYNTII 493
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP--NLVTYTILIDNVCNTKNLREA 65
P + TY FL++ LC+ R D+ RA LG P N+V + +I L EA
Sbjct: 278 PGVMTYGFLLQGLCRVRQ-------ADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEA 330
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G +PD Y+ +M G
Sbjct: 331 TELYETMGLKGCQPDAHTYSILMHG 355
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ LCK + N ++++ + P+++TY ILI C + L +A
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE-NVHPDIITYNILISWHCKVRLLDDA 645
Query: 66 MRLVS 70
L++
Sbjct: 646 AMLLN 650
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD TY+ L+ LCK + + + +M G PN+VTYTI++ + C
Sbjct: 339 LKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKK-GFAPNVVTYTIVLHSFCKNGMW 397
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+ L+ +S G + YN ++
Sbjct: 398 DDTRALLEEMSAKGLTLNSQGYNGMI 423
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY ++ CK +++M A G+ N Y +I +C +
Sbjct: 375 KGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK-GLTLNSQGYNGMIYALCKDGRMD 433
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM L+ + G PD YNTI+
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTII 458
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y ++ LC +T +++M +G ++ T+ ++ +C +REA R
Sbjct: 208 PDAVLYQTVIHALCDQGGVTEAATLLNEMLL-MGCAADVNTFDDVVRGMCGLGRVREAAR 266
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + G P Y +++G
Sbjct: 267 LVDRMMTKGCMPGVMTYGFLLQG 289
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP FT+ + LC+ + M A G P+ V Y +I +C+ + E
Sbjct: 170 RVPPTTFTFGVAARALCRLGRADEALALLRGM-ARHGCVPDAVLYQTVIHALCDQGGVTE 228
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L++ + G D ++ +++G
Sbjct: 229 AATLLNEMLLMGCAADVNTFDDVVRG 254
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ +YN L+K +CK ++ +++M A GIKPN V+Y ILI +C + +R+A+ L
Sbjct: 504 DVVSYNGLIKAMCKDGNVDRSLVLLEEM-AEKGIKPNNVSYNILISELCKERRVRDALEL 562
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G PD YNT++ G
Sbjct: 563 SKQMLNQGLAPDIVTYNTLING 584
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ +YN L+ LCK R + QM + G+ P++VTY LI+ +C +
Sbjct: 534 KGIKPNNVSYNILISELCKERRVRDALELSKQM-LNQGLAPDIVTYNTLINGLCKMGWMH 592
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L+ L + PD YN ++
Sbjct: 593 AALNLLEKLHNENVHPDIITYNILI 617
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN ++ LCK + + +MR S G P++ +Y +I ++CN + + EA + L
Sbjct: 403 YNGMIYALCKDGRMDEAMGLIQEMR-SQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 461
Query: 73 SDSGFKPDCFVYNTIM 88
+ G + YNTI+
Sbjct: 462 LEEGVVANGITYNTII 477
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP--NLVTYTILIDNVCNTKNLREA 65
P + TY FL++ LC+ R D+ RA LG P N+V + +I L EA
Sbjct: 262 PGVMTYGFLLQGLCRVRQ-------ADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEA 314
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G +PD Y+ +M G
Sbjct: 315 TELYETMGLKGCQPDAHTYSILMHG 339
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ LCK + N ++++ + P+++TY ILI C + L +A
Sbjct: 571 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE-NVHPDIITYNILISWHCKVRLLDDA 629
Query: 66 MRLVS 70
L++
Sbjct: 630 AMLLN 634
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD TY+ L+ LCK + + + +M G PN+VTYTI++ + C
Sbjct: 323 LKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKK-GFAPNVVTYTIVLHSFCKNGMW 381
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+ L+ +S G + YN ++
Sbjct: 382 DDTRALLEEMSAKGLTLNSQGYNGMI 407
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY ++ CK +++M A G+ N Y +I +C +
Sbjct: 359 KGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK-GLTLNSQGYNGMIYALCKDGRMD 417
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM L+ + G PD YNTI+
Sbjct: 418 EAMGLIQEMRSQGCNPDICSYNTII 442
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y ++ LC +T +++M +G ++ T+ ++ +C +REA R
Sbjct: 192 PDAVLYQTVIHALCDQGGVTEAATLLNEMLL-MGCAADVNTFDDVVRGMCGLGRVREAAR 250
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + G P Y +++G
Sbjct: 251 LVDRMMTKGCMPGVMTYGFLLQG 273
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP FT+ + LC+ + M A G P+ V Y +I +C+ + E
Sbjct: 154 RVPPTTFTFGVAARALCRLGRADEALALLRGM-ARHGCVPDAVLYQTVIHALCDQGGVTE 212
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L++ + G D ++ +++G
Sbjct: 213 AATLLNEMLLMGCAADVNTFDDVVRG 238
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ TYN L+ LC L D+M + +G+KPN+VTY LI+ C K L+
Sbjct: 328 QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM-SGMGLKPNVVTYNALINGFCKKKMLK 386
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G P+ +NT++ Y
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAY 414
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P+ T+N L+ C+ ++T ++M+ G++PN+VTY LI+ +C+
Sbjct: 290 MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ-GLQPNVVTYNSLINGLCSNG 348
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L +S G KP+ YN ++ G+
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGF 379
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C+ ++ +M + G+K +LVTY IL+D +C R+A+R
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGN-GLKADLVTYNILVDALCKKGETRKAVR 495
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G P YN ++ GY
Sbjct: 496 LLDEMFEVGLNPSHLTYNALIDGY 519
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TYN L+ CK + L +D + G+ PN++T+ LID + +A
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDI-GKRGLAPNVITFNTLIDAYGKAGRMDDA 423
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L S + D+G P+ YN ++ G+
Sbjct: 424 FLLRSMMLDTGVCPNVSTYNCLIVGF 449
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D+ TYN LV LCK +D+M +G+ P+ +TY LID N A
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEM-FEVGLNPSHLTYNALIDGYFREGNSTAA 528
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + G + + YN ++KG+
Sbjct: 529 LNVRTLMEKKGRRANIVTYNVLIKGF 554
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ T+N L+ K + + + M G+ PN+ TY LI C N++
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAF-LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVK 456
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA +L + +G K D YN ++
Sbjct: 457 EARKLAKEMEGNGLKADLVTYNILV 481
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ + + T N V + G + N+VTY +LI CN L EA
Sbjct: 505 LNPSHLTYNALIDGYFREGNSTAALN-VRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEA 563
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
RL++ + + G P+ Y+ +
Sbjct: 564 NRLLNEMLEKGLIPNRTTYDIL 585
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ ++ T++ ++ LCK + V+ M+A G P+++TY +ID C
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA-WGFSPSVITYNTIIDGYCKAG 278
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L+ + P+ +N ++ G+
Sbjct: 279 KMFKADALLKEMVAKRIHPNEITFNILIDGF 309
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +R +G+ N+VT+ ++I+ +C ++A +V + GF P YNTI+ GY
Sbjct: 217 YKEMIRRRIGV--NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGY 274
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ L+K C+ +++MR S G+ P+L+TY+I++D +C +L
Sbjct: 286 KALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMR-SYGLLPDLMTYSIVLDGLCKQGHLD 344
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L+ A+ +S +P+ F+Y +++G
Sbjct: 345 EAFELLKAMQESKIEPNIFIYTILIQG 371
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TY+ ++ LCK S T + +M G KPN+V Y+ +ID++C K + EAM
Sbjct: 79 EPDVITYSTIINGLCKMGSTTMAIQLLKKMEEK-GCKPNVVVYSTIIDSLCKDKLITEAM 137
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+S + + G P+ Y++I+ G+
Sbjct: 138 EFLSEMVNRGISPNVVTYSSILHGF 162
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TY+ ++ LCK L + + M+ S I+PN+ YTILI +CN L A
Sbjct: 323 LLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQES-KIEPNIFIYTILIQGMCNFGKLEAA 381
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L S L G +PD Y ++ G
Sbjct: 382 RELFSNLFVKGIQPDVVTYTVMISG 406
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P++ TYN L+ C + + M G P++ +Y ILI C +
Sbjct: 213 MIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIM-VRKGCAPSVRSYNILIKGHCKSG 271
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L++ +S PD Y+T+MKG+
Sbjct: 272 RIDEAKGLLAEMSHKALTPDTVTYSTLMKGF 302
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ Y+ ++ LCK + +T F+ +M + GI PN+VTY+ ++ CN
Sbjct: 111 KGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEM-VNRGISPNVVTYSSILHGFCNLGRSN 169
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + + PD +N ++ G
Sbjct: 170 EATSLFKQMVERNVMPDTVTFNILVDG 196
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD++T L+ C C + F V LG++PN VT++ L++ + + + +A+
Sbjct: 8 PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L + G++PD Y+TI+ G
Sbjct: 68 KLFDEMVKMGYEPDVITYSTIING 91
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD T+N LV L K + V + G++PN+ TY L+D C+
Sbjct: 178 MVERNVMPDTVTFNILVDGLSK-EGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQS 236
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +L + + G P YN ++KG+
Sbjct: 237 QMDEAQKLFNIMVRKGCAPSVRSYNILIKGH 267
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+IF Y L++ +C L + GI+P++VTYT++I + E
Sbjct: 357 KIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVK-GIQPDVVTYTVMISGLLKGGLSNE 415
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L ++ G P+ YN I++G+
Sbjct: 416 ACELFRDMAVHGCLPNSCTYNVIIQGF 442
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T++ L+ L + D+M +G +P+++TY+ +I+ +C + A
Sbjct: 43 LQPNHVTFSTLLNGLSSKAKIIDAVKLFDEM-VKMGYEPDVITYSTIINGLCKMGSTTMA 101
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L+ + + G KP+ VY+TI+
Sbjct: 102 IQLLKKMEEKGCKPNVVVYSTII 124
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ TY ++ L K M A G PN TY ++I
Sbjct: 388 LFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM-AVHGCLPNSCTYNVIIQGFLRNG 446
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
+ A RL+ + GF D + +
Sbjct: 447 DTSNAGRLIEEMVGRGFSADSSTFQML 473
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+FTY+ L+K LC + + +M+ G PN VTY LID C N+ +
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK-GFLPNAVTYNTLIDGYCKEGNMEK 421
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ + S +++ G +P+ ++T++ GY
Sbjct: 422 AIEVCSQMTEKGIEPNIITFSTLIDGY 448
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T+ L+ LCK + + F+ M AS G+ PN+ Y LID C NL EA
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDM-ASFGVVPNIFVYNCLIDGYCKAGNLSEA 352
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L S + PD F Y+ ++KG
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKG 377
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ CK + +M G+ PN+VT+ ILID +C T + A +
Sbjct: 261 PNLYTYNTMMDGYCKIAHVKKALELYXEMLGD-GLLPNVVTFGILIDGLCKTDEMVSARK 319
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G P+ FVYN ++ GY
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGY 343
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ TY L+ C+ + D+M I P +V YTILI +C
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM-IEKKIFPTVVIYTILIRGLCGES 242
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + +SG P+ + YNT+M GY
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ TYN L+ CK ++ QM GI+PN++T++ LID C +
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEK-GIEPNIITFSTLIDGYCKAGKME 455
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM L + + G PD Y ++ G+
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGH 483
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I T++ L+ CK + +M G+ P++V YT LID N +
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK-GLLPDVVAYTALIDGHFKDGNTK 490
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA RL + ++G P+ F + ++ G
Sbjct: 491 EAFRLHKEMQEAGLHPNVFTLSCLIDG 517
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P + Y L++ LC ++ + MR S G+ PNL TY ++D C
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNS-GMLPNLYTYNTMMDGYCKIA 277
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++++A+ L + G P+ + ++ G
Sbjct: 278 HVKKALELYXEMLGDGLLPNVVTFGILIDG 307
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L++ LC + F MR S G++P++ T ++I +LR+ M
Sbjct: 554 PNHVMYTALIQGLCTDGRIFKASKFFSDMRCS-GLRPDVFTCIVIIQGHFRAMHLRDVMM 612
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ VY + KGY
Sbjct: 613 LQADILKMGIIPNSSVYRVLAKGY 636
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLT-------------TVYNFVDQMRASLGIKPNLVTYTIL 52
L P++FT + L+ LCK ++ T + +++ SL PN V YT L
Sbjct: 504 LHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSL-CSPNHVMYTAL 562
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I +C + +A + S + SG +PD F I++G+
Sbjct: 563 IQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGH 601
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ Y L+ K + + +M+ + G+ PN+ T + LID +C
Sbjct: 464 MVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA-GLHPNVFTLSCLIDGLCKDG 522
Query: 61 NLREAMRLVSA 71
+ +A++L A
Sbjct: 523 RISDAIKLFLA 533
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++FTYNF ++ LC+ L V ++ G KP++VTY LI +C
Sbjct: 242 VIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRL-IDQGPKPDVVTYNYLIYGLCKNS 300
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA + L + G +PD F YNT++ GY
Sbjct: 301 KFQEAEVYLGKLVNEGLEPDSFTYNTLIAGY 331
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L+ LCK V M G PNL T+ IL++++C L +A+
Sbjct: 494 PDVYTYNSLLNGLCKTSKYEDVMETYKTM-VEKGCAPNLFTFNILLESLCRYHKLDKALG 552
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + PD + T++ G+
Sbjct: 553 LLEEMKNKSVNPDAVTFGTLIDGF 576
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ T+N LV LCK ++ V M S G P++ T+ ILI +
Sbjct: 420 KGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM-ISKGYFPDIFTFNILIHGYSTQLKME 478
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + D+G PD + YN+++ G
Sbjct: 479 NALEILDVMMDNGVDPDVYTYNSLLNG 505
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+F PD FTY L+ LC ++ GIKPN++ Y LI + N
Sbjct: 348 VFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGK-GIKPNVILYNTLIKGLSNQGL 406
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA +L S +S+ G P+ +N ++ G
Sbjct: 407 ILEAAQLASEMSEKGLIPEVQTFNILVNG 435
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ LCK + +D++ G+ PNL TY I +C L A+R+V
Sbjct: 218 TFNKLLHVLCKKGDVKECEKLLDKV-IKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGR 276
Query: 72 LSDSGFKPDCFVYNTIMKG 90
L D G KPD YN ++ G
Sbjct: 277 LIDQGPKPDVVTYNYLIYG 295
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + L PD FTYN L+ CK + + + G P+ TY LID +C+
Sbjct: 312 LVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFN-GFVPDEFTYRSLIDGLCHEG 370
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + G KP+ +YNT++KG
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKG 400
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ YN L+K L + +M + G+ P + T+ IL++ +C +
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGLILEAAQLASEM-SEKGLIPEVQTFNILVNGLCKMGCVS 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A LV + G+ PD F +N ++ GY
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGY 471
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PDIFT+N L+ + +D M + G+ P++ TY L++ +C T
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDN-GVDPDVYTYNSLLNGLCKTS 510
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ M + + G P+ F +N +++
Sbjct: 511 KYEDVMETYKTMVEKGCAPNLFTFNILLE 539
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++FT+N L++ LC+ L +++M+ + P+ VT+ LID C
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNK-SVNPDAVTFGTLIDGFCKNG 580
Query: 61 NLREAMRLVSALSD 74
+L A L + +
Sbjct: 581 DLDGAYTLFRKMEE 594
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F P +F+YN ++ L + +MR GI P++ ++TI + + C T
Sbjct: 104 FYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDR-GITPDVYSFTIRMKSFCRTSRP 162
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL++ +S G + + Y T++ G+
Sbjct: 163 HAALRLLNNMSSQGCEMNVVAYCTVVGGF 191
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD T+ L+ CK L Y +M + + TY I+I N+
Sbjct: 560 KSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVT 619
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + D PD + Y ++ G+
Sbjct: 620 MAEKLFQEMVDRCLGPDGYTYRLMVDGF 647
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY +V CK ++ Y F+ +M + G P+L T +I+ +C + EA
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMEN-GFIPSLTTLGRVINCLCVEDRVYEA 691
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
++ + G P+ NTI
Sbjct: 692 AGIIHRMVQKGLVPEAV--NTI 711
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ TYN L+ LC L D+M + +G+KPN+VTY LI+ C K L+
Sbjct: 328 QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM-SGMGLKPNVVTYNALINGFCKKKMLK 386
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G P+ +NT++ Y
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAY 414
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P+ T+N L+ C+ ++T ++M+ G++PN+VTY LI+ +C+
Sbjct: 290 MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ-GLQPNVVTYNSLINGLCSNG 348
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L +S G KP+ YN ++ G+
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGF 379
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR--ASLGIKPNLVTYTILIDNVCNTKNLR 63
L D+ TYN LV LCK +D+M G + N+VTY +LI CN L
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLE 529
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
EA RL++ + + G P+ Y+ +
Sbjct: 530 EANRLLNEMLEKGLIPNRTTYDIL 553
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C+ ++ +M + G+K +LVTY IL+D +C R+A+R
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGN-GLKADLVTYNILVDALCKKGETRKAVR 495
Query: 68 LVSALS---DSGFKPDCFVYNTIMKGY 91
L+ ++ G + + YN ++KG+
Sbjct: 496 LLDEMTLMEKKGRRANIVTYNVLIKGF 522
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TYN L+ CK + L +D + G+ PN++T+ LID + +A
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDI-GKRGLAPNVITFNTLIDAYGKAGRMDDA 423
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L S + D+G P+ YN ++ G+
Sbjct: 424 FLLRSMMLDTGVCPNVSTYNCLIVGF 449
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ T+N L+ K + + + M G+ PN+ TY LI C N++
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAF-LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVK 456
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA +L + +G K D YN ++
Sbjct: 457 EARKLAKEMEGNGLKADLVTYNILV 481
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ ++ T++ ++ LCK + V+ M+A G P+++TY +ID C
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA-WGFSPSVITYNTIIDGYCKAG 278
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L+ + P+ +N ++ G+
Sbjct: 279 KMFKADALLKEMVAKRIHPNEITFNILIDGF 309
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +R +G+ N+VT+ ++I+ +C ++A +V + GF P YNTI+ GY
Sbjct: 217 YKEMIRRRIGV--NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGY 274
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD FT+N ++ LCK L + F+D+M G +PN++TYTILID C
Sbjct: 363 MVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEM-VKKGFEPNVITYTILIDGFCKQG 421
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA ++V+++S G + YN ++
Sbjct: 422 HFEEASKVVNSMSAKGLSLNTVGYNCLI 449
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P I + N L+ C+ + F+ M G+ P++VTY LI+ +C +
Sbjct: 576 EEIFPSINSCNILINSFCRTGKVNDALQFLRDM-IQRGLTPDIVTYNSLINGLCKMGRFQ 634
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + L G PD YNT++ Y
Sbjct: 635 EALNLFNGLQAKGIHPDAVTYNTLISRY 662
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI TYN L+ LCK N + ++A GI P+ VTY LI C
Sbjct: 608 MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAK-GIHPDAVTYNTLISRYCYEG 666
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A +L+ +GF P+ ++ ++
Sbjct: 667 LFNDACQLLFKGVSNGFIPNEITWSILI 694
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P ++T+ ++K C + + + + M G PN + Y +LI +
Sbjct: 191 MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKH-GCVPNSIIYQMLIHALSENN 249
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM+L+ + G +PD +N ++ G
Sbjct: 250 RVNEAMKLLEEMFLMGCEPDVQTFNDVIHG 279
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + YN L+ LCK + +M +S G KP++ T+ LI +C +
Sbjct: 436 KGLSLNTVGYNCLIGALCKDGKIQDALQMYGEM-SSKGCKPDIYTFNSLIYGLCKNDKME 494
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + G + YNT++ +
Sbjct: 495 EALGLYRDMLLEGVIANTVTYNTLIHAF 522
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI+T+N L+ LCK + M G+ N VTY LI + ++
Sbjct: 471 KGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLE-GVIANTVTYNTLIHAFLRLELIQ 529
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +LV + G D YN ++K
Sbjct: 530 QADKLVGEMRFRGCPLDNITYNGLIKA 556
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ + + + G +P+ T+ I+ID +C L A+
Sbjct: 334 PNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALE 393
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + GF+P+ Y ++ G+
Sbjct: 394 FLDEMVKKGFEPNVITYTILIDGF 417
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN L+ LCK ++ VD+M G+ P+++TY+ ++D +C +
Sbjct: 366 KHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR-GVPPDIITYSSILDALCKNHQVD 424
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ L D G +P+ + Y ++ G
Sbjct: 425 KAIALLTKLKDQGIRPNMYTYTILIDG 451
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK---CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+I + + PD++T+N LV CK + TV+ M GIKPN+VTY L+D C
Sbjct: 258 MILENIKPDVYTFNILVDGFCKDGKMKEGKTVF----AMMMKQGIKPNVVTYCSLMDGYC 313
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
K + +A ++ +S G PD YN ++ G+
Sbjct: 314 LVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGF 347
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PPDI TY+ ++ LCK + + +++ GI+PN+ TYTILID +C L
Sbjct: 401 RGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQ-GIRPNMYTYTILIDGLCKGGRLE 459
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + L G+ Y ++ G+
Sbjct: 460 DAHNIFEDLLVKGYNITVNTYTVMIHGF 487
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y+ ++ +CK + + ++ +M S GI PN+VTY+ LI L++A+
Sbjct: 195 PNVVMYSTIIDGMCKDKHVNDAFDLYSEM-VSKGISPNVVTYSALISGFFTVGQLKDAID 253
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + KPD + +N ++ G+
Sbjct: 254 LFNKMILENIKPDVYTFNILVDGF 277
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+++TY L+ LCK L +N F D + I N TYT++I CN EA+
Sbjct: 440 PNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVN--TYTVMIHGFCNKGLFDEAL 497
Query: 67 RLVSALSDSGFKPDCFVYNTIMK 89
L+S + D+ PD Y I++
Sbjct: 498 ALLSKMKDNSCIPDAVTYEIIIR 520
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y L+ LCK + + ++ +L ++PN+V Y+ +ID +C K++ +A L
Sbjct: 161 DQVGYGTLIHGLCKVGETRAALDLLRRVDGNL-VQPNVVMYSTIIDGMCKDKHVNDAFDL 219
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + G P+ Y+ ++ G+
Sbjct: 220 YSEMVSKGISPNVVTYSALISGF 242
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---------------LGIKPN 45
+ +Q P P +N ++ L K + TV + QM +G PN
Sbjct: 67 LLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPN 126
Query: 46 LVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+T+T LI +C + +A+ + GF+ D Y T++ G
Sbjct: 127 TITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHG 171
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN +V LCK R + + D+MRA+ G+ P++VTY+I+I + C NL A +
Sbjct: 508 PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAA-GVMPDVVTYSIVIHSFCKDNNLDSAFK 566
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + ++ PD Y+ ++ G
Sbjct: 567 MLERMKEAKCVPDVVTYSALING 589
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PPD+ +Y ++ LCK + +D+M G +PN++TY L+D C
Sbjct: 291 MVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKM-IQRGCQPNVITYGTLVDGFCRVG 349
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L A+ LV +++ G++P+ YN IM
Sbjct: 350 DLDGAVELVRKMTERGYRPNAITYNNIM 377
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+FTY+ +V L K + V+ M S G PN+VTY+ L+ +C L EA
Sbjct: 945 PPDVFTYSTIVDSLVKSGKVDDACRLVEDM-VSKGCSPNVVTYSSLLHGLCKAGKLDEAT 1003
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ SG P+ YNTI+ G+
Sbjct: 1004 ALLQRMTRSGCSPNIVTYNTIIDGH 1028
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN ++ CK + Y+ +++M G +PN+VTYT+L+D C +A+
Sbjct: 1016 PNIVTYNTIIDGHCKLGRIDEAYHLLEEM-VDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 1074
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
LV + + G+ P+ F YN+++
Sbjct: 1075 LVEVMVEKGYVPNLFTYNSLL 1095
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK + + Y QM S G+ P+ VTY+I+I ++C + + EA
Sbjct: 1227 PDIITYNTVIDGLCKSKRVDRAYKLFLQM-LSDGLAPDDVTYSIVISSLCKWRFMDEANN 1285
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +GF P Y T++ G+
Sbjct: 1286 VLELMLKNGFDPGAITYGTLIDGF 1309
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK + ++ MR P+ +TYT LI+ +CN L EA R
Sbjct: 613 PNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQ-SCTPDSITYTCLINGLCNASRLEEAWR 671
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + D G PD Y T+++
Sbjct: 672 VLREMKDKGCLPDRMTYGTLLRA 694
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N ++ +CK + Y + ++ S G PNLVTY L+ +C ++ +A
Sbjct: 1156 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQES-GCTPNLVTYNSLVHGLCKSRRFDQAEY 1214
Query: 68 LVSALS-DSGFKPDCFVYNTIMKG 90
L+ ++ G PD YNT++ G
Sbjct: 1215 LLREMTRKQGCSPDIITYNTVIDG 1238
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN LV LCK R + +M G P+++TY +ID +C +K + A +
Sbjct: 1191 PNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 1250
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G PD Y+ ++
Sbjct: 1251 LFLQMLSDGLAPDDVTYSIVI 1271
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ LCK ++ ++ +M G PNLVTY LID +C + +A
Sbjct: 578 PDVVTYSALINGLCKAGTVDKAFDVFQEMLGC-GCAPNLVTYNTLIDGLCKINKVEQAAE 636
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + PD Y ++ G
Sbjct: 637 MLEIMRKQSCTPDSITYTCLING 659
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ TY+ L+ LCK L + +M S G PN+VTY +ID C
Sbjct: 974 MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS-GCSPNIVTYNTIIDGHCKLG 1032
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L+ + D G +P+ Y ++ +
Sbjct: 1033 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAF 1063
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F+YN ++ CK + ++QM + G P++V+YT +I+ +C + EA R
Sbjct: 263 PNVFSYNTVLHGFCKANRVENALWLLEQM-VTRGCPPDVVSYTTVINGLCKLDQVDEACR 321
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G +P+ Y T++ G+
Sbjct: 322 VMDKMIQRGCQPNVITYGTLVDGF 345
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ CKC V+ M G PNL TY L+D C + A +
Sbjct: 1051 PNVVTYTVLLDAFCKCGKAEDAIGLVEVM-VEKGYVPNLFTYNSLLDMFCKKDEVERACQ 1109
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+S++ G P+ YNT++ G
Sbjct: 1110 LLSSMIQKGCVPNVVSYNTVIAG 1132
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TY L+ CK +L + Q+ S G P++VT++I ID + LR+A
Sbjct: 1297 PGAITYGTLIDGFCKTGNLDKALEIL-QLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGE 1355
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD YNT++KG+
Sbjct: 1356 LLETMLRAGLVPDTVTYNTLLKGF 1379
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FT+ L+ LC+ + T Y + +M G+ N++ + ++I +C+ + L A+
Sbjct: 875 PNMFTFTILIHGLCRAGDIGTAYELLKEM-PRHGVPQNVILHNVVIKGLCSARKLDSALE 933
Query: 68 LVSALSDSGF-KPDCFVYNTIM 88
L + +SG PD F Y+TI+
Sbjct: 934 LFKEMEESGSCPPDVFTYSTIV 955
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY+ ++ LCK R + N ++ M + G P +TY LID C T NL +A
Sbjct: 1260 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN-GFDPGAITYGTLIDGFCKTGNLDKA 1318
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ ++ L G PD ++ +
Sbjct: 1319 LEILQLLLSKGSYPDVVTFSIFI 1341
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P ++ +N ++K LC R L + +M S P++ TY+ ++D++ + + +A
Sbjct: 908 VPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 967
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RLV + G P+ Y++++ G
Sbjct: 968 CRLVEDMVSKGCSPNVVTYSSLLHG 992
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ L+ LCK + L +++D M + P++VTY ++D +C ++ + +A
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNR-CYPDVVTYNSVVDGLCKSRRINDAFL 531
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + +G PD Y+ ++ +
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSF 555
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ +YN ++ LCK + ++QM ++ + P++VT+ +ID +C T
Sbjct: 1114 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCV-PDIVTFNTIIDAMCKTY 1172
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L + + +SG P+ YN+++ G
Sbjct: 1173 RVDIAYELFNLIQESGCTPNLVTYNSLVHG 1202
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PPD TYN ++ L K L +++M + G PN+ +Y ++ C +
Sbjct: 224 KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANRVE 282
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + G PD Y T++ G
Sbjct: 283 NALWLLEQMVTRGCPPDVVSYTTVING 309
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY LV C+ L V +M G +PN +TY ++ C
Sbjct: 326 MIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM-TERGYRPNAITYNNIMHVFCRRN 384
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A +++ + +G PD Y+TI+ G+
Sbjct: 385 DMERAHQVLQMMIQTGCPPDAINYSTIISGF 415
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
P+ VTY +I+ + + L +A+RL+ + D+GF P+ F YNT++ G+
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGF 275
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK--PNLVTYTILIDNVCN 58
+I + PD+ + L+ LCK ++ + +R S+G+ P++V Y+ILI +C
Sbjct: 431 MIRRGCRPDVACLSTLIDALCKAAAIDSAQEL---LRMSIGMDCAPDVVAYSILIHALCK 487
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K L EA + + + PD YN+++ G
Sbjct: 488 AKRLPEAESWLDVMVKNRCYPDVVTYNSVVDG 519
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++FTYN L+ CK + + M G PN+V+Y +I +C
Sbjct: 1079 MVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM-IQKGCVPNVVSYNTVIAGLCKAT 1137
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ E + L+ + + PD +NTI+
Sbjct: 1138 KVHEGVLLLEQMLSNNCVPDIVTFNTII 1165
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ C+ + + V QM G P+ + Y+ +I C LREA
Sbjct: 368 PNAITYNNIMHVFCRRNDMERAHQ-VLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHD 426
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G +PD +T++
Sbjct: 427 LLEQMIRRGCRPDVACLSTLI 447
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K PD+ T++ + L K L ++ M + G+ P+ VTY L+ C+
Sbjct: 1325 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA-GLVPDTVTYNTLLKGFCDAS 1383
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L + G +PD Y T++
Sbjct: 1384 LTEDAVDLFEVMRQCGCEPDNATYTTLV 1411
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +T N L++ L + L + + R L PN+ T+TILI +C ++ A L
Sbjct: 843 DTYTCNCLLQALLR---LKRPKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYEL 899
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G + ++N ++KG
Sbjct: 900 LKEMPRHGVPQNVILHNVVIKG 921
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PP++FTYN +V C L +M + PN VT+TIL+D +C
Sbjct: 259 MVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM-VGRDVMPNTVTFTILVDGLCKEG 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + +++ G +PD YN +M GY
Sbjct: 318 MVSEARLVFETMTEKGVEPDISTYNALMDGY 348
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ +Y ++ LCK + + + +M + G KPN+VTY+ +ID++C +
Sbjct: 189 MVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQN-GCKPNVVTYSTIIDSLCKDR 247
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +AM +S + + G P+ F YN+I+ G+
Sbjct: 248 LVNDAMEFLSEMVERGIPPNVFTYNSIVHGF 278
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ L++ LC+ N +M S G PNLVTY IL+D C +L
Sbjct: 402 KALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM-CSYGPHPNLVTYVILLDGFCKHGHLD 460
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L+ ++ + +P+ Y +++G
Sbjct: 461 EALKLLKSMKEKKLEPNIVHYTILIEG 487
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++++ N L+ CLC+ + + + +M LGI P+ +T+ LI+ +CN ++EA+ L
Sbjct: 127 NVYSLNILINCLCRLNHVDFSVSVLGKM-FKLGIHPDAITFNALINGLCNEGKIKEAVEL 185
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G +P+ Y T++ G
Sbjct: 186 FNEMVKRGHEPNVISYTTVING 207
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD T+N L+ LC + ++M G +PN+++YT +I+ +C T N A
Sbjct: 159 IHPDAITFNALINGLCNEGKIKEAVELFNEM-VKRGHEPNVISYTTVINGLCKTGNTSMA 217
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + + +G KP+ Y+TI+
Sbjct: 218 VDVFKKMEQNGCKPNVVTYSTII 240
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI TYN L+ C R + + M G P +Y ILI+ C ++ +
Sbjct: 332 KGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM-IRKGCAPGAHSYNILINGYCKSRRMD 390
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L++ + PD Y+T+M+G
Sbjct: 391 EAKSLLAEMYHKALNPDTVTYSTLMQG 417
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ CK L + M+ ++PN+V YTILI+ + L A
Sbjct: 441 PNLVTYVILLDGFCKHGHLDEALKLLKSMKEK-KLEPNIVHYTILIEGMFIAGKLEVAKE 499
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L G +PD Y ++KG
Sbjct: 500 LFSKLFGDGTRPDIRTYTVMIKG 522
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+ T+ LV LCK + + V + G++P++ TY L+D C +
Sbjct: 294 MVGRDVMPNTVTFTILVDGLCK-EGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQR 352
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G P YN ++ GY
Sbjct: 353 LMNEAKKVFEIMIRKGCAPGAHSYNILINGY 383
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P +YN L+ CK R + + + +M + P+ VTY+ L+ +C
Sbjct: 364 MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHK-ALNPDTVTYSTLMQGLCQLG 422
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ L + G P+ Y ++ G+
Sbjct: 423 RPKEALNLFKEMCSYGPHPNLVTYVILLDGF 453
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L P+I Y L++ + L ++ G +P++ TYT++I +
Sbjct: 472 KKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGD-GTRPDIRTYTVMIKGLLKEGLSD 530
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + D GF P+ YN +++G+
Sbjct: 531 EAYDLFRKMEDDGFLPNSCSYNVMIQGF 558
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD TY+ L+ CK L +D M S G +PN+VTY+ILI++ C K
Sbjct: 340 MVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLM-VSKGCEPNIVTYSILINSYCKAK 398
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ MRL +S G D YNT+++G+
Sbjct: 399 RVDNGMRLFCEISSKGLVADTVTYNTLVQGF 429
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D TYN LV+ C+ L +M S G+ P++VTY IL+D +C+ L+
Sbjct: 413 KGLVADTVTYNTLVQGFCQSGKLNVAKELFQEM-VSRGVPPSVVTYGILLDGLCDNGELQ 471
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + S +YN I+ G
Sbjct: 472 KALEIFEKMQKSRMILGIGIYNIIIHG 498
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKPNLVTYTILIDNVC 57
++ + +PP + TY L+ LC L ++M+ S LGI Y I+I +C
Sbjct: 445 MVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIG----IYNIIIHGMC 500
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N + +A L +LS G KPD YN ++ G
Sbjct: 501 NASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGG 533
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ +++T N ++ C C+ R L ++ V + G +PN +T++ LI+ C + EA
Sbjct: 100 IEHNMYTMNIMINCFCRKRKLLFAFSVVGRA-LKFGFEPNTITFSTLINGFCLEGRVSEA 158
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + ++P+ NT++ G
Sbjct: 159 VALVDRMVEMKYRPNVVTVNTLING 183
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
TY ++ +CK + + +M IK ++V Y+I+ID++C NL +A+ L +
Sbjct: 210 ITYGPVLNRMCKSGNTALALDLFRKMEER-SIKASVVQYSIVIDSLCKDGNLDDALSLFN 268
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G K D Y++I+ G
Sbjct: 269 EMEMKGIKADVVAYSSIIGG 288
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ TYN ++ LCK SL+ +M+ G P+ TY ILI
Sbjct: 515 LSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKED-GCAPSDCTYNILIRAHLGGS 573
Query: 61 NLREAMRLVSALSDSGFKPDC 81
+ ++ L+ + GF D
Sbjct: 574 GVISSVELIEEMKMRGFAADA 594
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + D+ Y+ ++ LC + +M I PN+VT++ LID L
Sbjct: 272 MKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGR-NIIPNVVTFSALIDVFVKEGKL 330
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + + G PD Y++++ G+
Sbjct: 331 LEAKELYNEMVARGIAPDTITYSSLIDGF 359
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + ++ L + + + V F +M + GI+ N+ T I+I+ C + L A
Sbjct: 67 PSLIDFSKLFSAVARRKEYDLVLGFCKEMDLN-GIEHNMYTMNIMINCFCRKRKLLFAFS 125
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V GF+P+ ++T++ G+
Sbjct: 126 VVGRALKFGFEPNTITFSTLINGF 149
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+ T++ L+ C ++ VD+M + +PN+VT LI+ +C + EA+
Sbjct: 136 EPNTITFSTLINGFCLEGRVSEAVALVDRM-VEMKYRPNVVTVNTLINGLCLKGRVTEAL 194
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ + G + + Y ++
Sbjct: 195 VLIDRMVKYGCEANEITYGPVL 216
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN L+ CK L D M S G +P++VTY+ILI++ C K
Sbjct: 370 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM-VSKGCEPDIVTYSILINSYCKAK 428
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + MRL +S G P+ YNT++ G+
Sbjct: 429 RVDDGMRLFREISSKGLIPNTITYNTLVLGF 459
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM---RASLGIKPNLVTYTILIDNVC 57
++ + +PP + TY L+ LC L ++M R +LGI Y I+I +C
Sbjct: 475 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIG----IYNIIIHGMC 530
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N + +A L +LSD G KPD YN ++ G
Sbjct: 531 NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 563
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ TYN LV C+ L +M S G+ P++VTY IL+D +C+ L
Sbjct: 443 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM-VSRGVPPSVVTYGILLDGLCDNGELN 501
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + S +YN I+ G
Sbjct: 502 KALEIFEKMQKSRMTLGIGIYNIIIHG 528
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T++ LV C ++ VD+M + +P+LVT + LI+ +C + EA+
Sbjct: 166 EPDTITFSTLVNGFCLEGRVSEAVALVDRM-VEMKQRPDLVTVSTLINGLCLKGRVSEAL 224
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ + + GF+PD Y ++
Sbjct: 225 VLIDRMVEYGFQPDEVTYGPVL 246
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PDI TY+ L+ CK + + ++ +S G+ PN +TY L+ C +
Sbjct: 405 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSG 463
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A L + G P Y ++ G
Sbjct: 464 KLNAAKELFQEMVSRGVPPSVVTYGILLDG 493
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ LCK + + +M IK ++V Y+I+ID++C + +A+
Sbjct: 237 PDEVTYGPVLNRLCKSGNSALALDLFRKMEER-NIKASVVQYSIVIDSLCKDGSFDDALS 295
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G K D Y++++ G
Sbjct: 296 LFNEMEMKGIKADVVTYSSLIGG 318
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + D+ TY+ L+ LC + +M I P++VT++ LID L
Sbjct: 302 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR-NIIPDVVTFSALIDVFVKEGKL 360
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + + G PD YN+++ G+
Sbjct: 361 LEAKELYNEMITRGIAPDTITYNSLIDGF 389
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++T ++ C C+ + L ++ + + LG +P+ +T++ L++ C + EA
Sbjct: 130 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRA-WKLGYEPDTITFSTLVNGFCLEGRVSEA 188
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + +PD +T++ G
Sbjct: 189 VALVDRMVEMKQRPDLVTVSTLING 213
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN ++ LCK SL+ +M+ G P+ TY ILI L
Sbjct: 548 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED-GCTPDDFTYNILIRAHLGGSGLI 606
Query: 64 EAMRLVSALSDSGFKPD 80
++ L+ + GF D
Sbjct: 607 SSVELIEEMKVCGFSAD 623
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +N L + + + V F M + GI+ ++ T TI+I+ C K L A
Sbjct: 97 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELN-GIEHDMYTMTIMINCYCRKKKLLFAFS 155
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ G++PD ++T++ G+
Sbjct: 156 VLGRAWKLGYEPDTITFSTLVNGF 179
>gi|52548293|gb|AAU82142.1| pentatricopeptide (PPR) repeat-containing [uncultured archaeon
GZfos10C7]
Length = 752
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDIFTYN L+K K R +VD MR GI PN+VTY LID + EA
Sbjct: 286 LTPDIFTYNMLIK---KTRDYDGAKAWVDTMREE-GIWPNVVTYNTLIDK---APSYNEA 338
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
LV + + KPD F YNT++K
Sbjct: 339 KALVDTMREEAIKPDDFTYNTLIK 362
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+I TY L+K K V V MR GI PN+VTY LI+ + EA
Sbjct: 510 IKPNIVTYTTLIK---KAPDYAKVNALVAMMREE-GILPNVVTYNTLIEK---APDYDEA 562
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+ + + +PD F YNT++K
Sbjct: 563 NVWMETMKEENVQPDIFTYNTLIK 586
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FTY+ L+ K ++V +MR GIKPN+VTYT LI + +
Sbjct: 480 PNVFTYSELID---KAPDYNEAKSWVYKMREE-GIKPNIVTYTTLIKKAPDYAKVNA--- 532
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
LV+ + + G P+ YNT+++
Sbjct: 533 LVAMMREEGILPNVVTYNTLIE 554
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PDI TY L+K K V V M+ GI+PN+ TY+ LID +
Sbjct: 380 ETIKPDIVTYTTLIK---KAPDYDKVNALVAMMQEE-GIRPNVFTYSELID---KAPDYN 432
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA V + + P+ F Y ++K
Sbjct: 433 EAKSWVYKMREEVISPNVFTYTRLIK 458
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN L+ CK L D M S G +P++VTY+ILI++ C K
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM-VSKGCEPDIVTYSILINSYCKAK 399
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + MRL +S G P+ YNT++ G+
Sbjct: 400 RVDDGMRLFREISSKGLIPNTITYNTLVLGF 430
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM---RASLGIKPNLVTYTILIDNVC 57
++ + +PP + TY L+ LC L ++M R +LGI Y I+I +C
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIG----IYNIIIHGMC 501
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N + +A L +LSD G KPD YN ++ G
Sbjct: 502 NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ TYN LV C+ L +M S G+ P++VTY IL+D +C+ L
Sbjct: 414 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM-VSRGVPPSVVTYGILLDGLCDNGELN 472
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + S +YN I+ G
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHG 499
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T++ LV C ++ VD+M + +P+LVT + LI+ +C + EA+
Sbjct: 137 EPDTITFSTLVNGFCLEGRVSEAVALVDRM-VEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ + + GF+PD Y ++
Sbjct: 196 VLIDRMVEYGFQPDEVTYGPVL 217
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PDI TY+ L+ CK + + ++ +S G+ PN +TY L+ C +
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSG 434
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A L + G P Y ++ G
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDG 464
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ LCK + + +M IK ++V Y+I+ID++C + +A+
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEER-NIKASVVQYSIVIDSLCKDGSFDDALS 266
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G K D Y++++ G
Sbjct: 267 LFNEMEMKGIKADVVTYSSLIGG 289
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + D+ TY+ L+ LC + +M I P++VT++ LID L
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR-NIIPDVVTFSALIDVFVKEGKL 331
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + + G PD YN+++ G+
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGF 360
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++T ++ C C+ + L ++ + + LG +P+ +T++ L++ C + EA
Sbjct: 101 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRA-WKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + +PD +T++ G
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLING 184
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN ++ LCK SL+ +M+ G P+ TY ILI L
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED-GCTPDDFTYNILIRAHLGGSGLI 577
Query: 64 EAMRLVSALSDSGFKPD 80
++ L+ + GF D
Sbjct: 578 SSVELIEEMKVCGFSAD 594
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +N L + + + V F M + GI+ ++ T TI+I+ C K L A
Sbjct: 68 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELN-GIEHDMYTMTIMINCYCRKKKLLFAFS 126
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ G++PD ++T++ G+
Sbjct: 127 VLGRAWKLGYEPDTITFSTLVNGF 150
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ +YN L+K +CK ++ +++M A GIKPN V+Y ILI +C + +R+A+ L
Sbjct: 520 DVVSYNGLIKAMCKDGNVDRSLVLLEEM-AEKGIKPNNVSYNILISELCKERRVRDALEL 578
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G PD YNT++ G
Sbjct: 579 SKQMLNQGLAPDIVTYNTLING 600
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ +YN L+ LCK R + QM + G+ P++VTY LI+ +C +
Sbjct: 550 KGIKPNNVSYNILISELCKERRVRDALELSKQM-LNQGLAPDIVTYNTLINGLCKMGWMH 608
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L+ L + PD YN ++
Sbjct: 609 AALNLLEKLHNENVHPDIITYNILI 633
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN ++ LCK + + +MR S G P++ +Y +I ++CN + + EA + L
Sbjct: 419 YNGMIYALCKDGRMDEAMGLIQEMR-SQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 477
Query: 73 SDSGFKPDCFVYNTIM 88
+ G + YNTI+
Sbjct: 478 LEEGVVANGITYNTII 493
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP--NLVTYTILIDNVCNTKNLREA 65
P + TY FL++ LC+ R D+ RA LG P N+V + +I L EA
Sbjct: 278 PGVMTYGFLLQGLCRVRQ-------ADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEA 330
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G +PD Y+ +M G
Sbjct: 331 TELYETMGLKGCQPDAHTYSILMHG 355
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD TY+ L+ LCK +++ + +M G PN+VTYTI++ + C
Sbjct: 339 LKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKK-GFAPNVVTYTIVLHSFCKNGMW 397
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+ L+ +S G + YN ++
Sbjct: 398 DDTRALLEEMSAKGLTLNSQGYNGMI 423
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ LCK + N ++++ + P+++TY ILI C + L +A
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE-NVHPDIITYNILISWHCKVRLLDDA 645
Query: 66 MRLVS 70
L++
Sbjct: 646 AMLLN 650
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y ++ LC +T +++M +G ++ T+ ++ +C +REA R
Sbjct: 208 PDAVLYQTVIHALCDQGGVTEAATLLNEMLL-MGCAADVNTFDDVVRGMCGLGRVREAAR 266
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + G P Y +++G
Sbjct: 267 LVDRMMTKGCMPGVMTYGFLLQG 289
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP FT+ + LC+ + M A G P+ V Y +I +C+ + E
Sbjct: 170 RVPPTTFTFGVAARALCRLGRANEALALLRGM-ARHGCVPDAVLYQTVIHALCDQGGVTE 228
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L++ + G D ++ +++G
Sbjct: 229 AATLLNEMLLMGCAADVNTFDDVVRG 254
>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+K LCK + + N + +M G+ P+ VTY LID +C T +L EAM
Sbjct: 497 PDVIAYNILIKGLCKTQRIAEAQNLLHEMEEK-GLVPSAVTYNTLIDGLCKTDHLEEAML 555
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S + + +P+ Y+T++ G
Sbjct: 556 FLSMMIEKEREPNVITYSTLING 578
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+ T++ ++ L K L M A +G KP+L+ Y LID +C + L+E+
Sbjct: 320 VPPNSTTFSIVINGLIKTGDLDLAVGLFRDM-ARIGCKPDLLLYNNLIDGLCTSNRLQES 378
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
L+ + +SG +P F N I
Sbjct: 379 CGLLQEMEESGIEPTSFTNNCI 400
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y+ + L K + + + A G P+++ Y ILI +C T+ + EA
Sbjct: 462 PDIVAYSACLDGLIKIQEVDQALKLFQDICAQ-GYCPDVIAYNILIKGLCKTQRIAEAQN 520
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G P YNT++ G
Sbjct: 521 LLHEMEEKGLVPSAVTYNTLIDG 543
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P TYN L+ LCK L F+ M +PN++TY+ LI+ +CN
Sbjct: 528 KGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMM-IEKEREPNVITYSTLINGLCNAGRPD 586
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L + + G P Y + G
Sbjct: 587 DALVLWNEMGRKGCTPSSIAYMAFIHG 613
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
LVK LCK F+ M A G +P++V Y+ +D + + + +A++L +
Sbjct: 435 LVKELCKHGKEVEACKFLVDM-AEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQ 493
Query: 76 GFKPDCFVYNTIMKG 90
G+ PD YN ++KG
Sbjct: 494 GYCPDVIAYNILIKG 508
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P FT N + CLC+ ++ + + +MR G P + T L+ +C EA
Sbjct: 390 IEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIH-GHVPWIKHSTSLVKELCKHGKEVEA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + +++ GF+PD Y+ + G
Sbjct: 449 CKFLVDMAEEGFQPDIVAYSACLDG 473
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+ P++ TY+ L+ LC ++M G P+ + Y I + N
Sbjct: 560 MIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEM-GRKGCTPSSIAYMAFIHGLSNCG 618
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ + + + KPD +VY ++ +
Sbjct: 619 RPNEALVYLREMEEREMKPDTYVYVGLLNAF 649
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 37 RASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
R + PN T++I+I+ + T +L A+ L ++ G KPD +YN ++ G
Sbjct: 315 RGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDG 368
>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD FTY+ ++ C ++ + + +D+MR + PN+ TY +I +C K
Sbjct: 274 MLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMR-RCNLLPNVFTYNCIIKRLCKIK 332
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
+ EA +L+ + SG KPD + YN I
Sbjct: 333 KVEEAYQLLDEMISSGLKPDTWSYNAI 359
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++FTYN ++K LCK + + Y +D+M +S G+KP+ +Y + C+ + A
Sbjct: 314 LLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMISS-GLKPDTWSYNAIQAYHCDHCEVNRA 372
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L+S + PD YN ++K
Sbjct: 373 LKLISRMEKDVCFPDRHTYNMVLK 396
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L++ LCK + +F++ M S ++P+ TY+I I + C+ N+ A +
Sbjct: 247 DLLAYNNLLEALCKGGHVDEAMDFLNDM-LSKKVEPDAFTYSIFIRSYCDANNVHSAFGV 305
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ + P+ F YN I+K
Sbjct: 306 LDKMRRCNLLPNVFTYNCIIK 326
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P I + L+ LCK + + F DQ+++ + TY+ILI+ + +A
Sbjct: 175 IKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLTTK--TYSILINGWGKIGDSGKA 232
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L A+ + G D YN +++
Sbjct: 233 RELFDAMLEQGCHVDLLAYNNLLEA 257
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ CK L + M+++ +KPN+V Y ILID +C ++NL+EA +
Sbjct: 470 PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTY-LKPNMVMYNILIDAMCKSRNLKEARK 528
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L G +P+ +Y TI+ G
Sbjct: 529 LFSELFVQGLQPNVQIYTTIING 551
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+IFTYN L++ LC +++M SL I PN+VT+++LI+ C N+
Sbjct: 291 KGISPNIFTYNSLIQGLCNFSRWREASAMLNEM-MSLNIMPNIVTFSLLINIFCKEGNVF 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ +++ G +P+ Y+++M GY
Sbjct: 350 EARGVLKTMTEMGVEPNVVTYSSLMNGY 377
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ TY ++ LCK +M G +P++VTY+ +ID++C +
Sbjct: 218 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKM-GEAGCQPDVVTYSTIIDSLCKDR 276
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + S + G P+ F YN++++G
Sbjct: 277 RVNEALDIFSYMKAKGISPNIFTYNSLIQG 306
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD+F+YN L+ CK + + ++M G+ P++V+Y LID +C
Sbjct: 393 MITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM-IHQGLTPDIVSYNTLIDGLCQLG 451
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA L + +G PD Y+ ++ G+
Sbjct: 452 RLREAHDLFKNMLTNGNLPDLCTYSILLDGF 482
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ YN L+ +CK R+L ++ G++PN+ YT +I+ +C L EA
Sbjct: 503 LKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQ-GLQPNVQIYTTIINGLCKEGLLDEA 561
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P+ F YN I++G+
Sbjct: 562 LEAFRNMEEDGCPPNEFSYNVIIRGF 587
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI +YN L+ LC+ L ++ M + G P+L TY+IL+D C
Sbjct: 428 MIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN-GNLPDLCTYSILLDGFCKQG 486
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A RL A+ + KP+ +YN ++
Sbjct: 487 YLAKAFRLFRAMQSTYLKPNMVMYNILI 514
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I T++ L+ CK ++ + M +G++PN+VTY+ L++ + EA +
Sbjct: 330 PNIVTFSLLINIFCKEGNVFEARGVLKTM-TEMGVEPNVVTYSSLMNGYSLQAEVVEARK 388
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KPD F YN ++ GY
Sbjct: 389 LFDVMITKGCKPDVFSYNILINGY 412
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +T + L+ C + + + ++ + ++ LG++ +VT+ LI+ +C +A
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKI-IKLGLQLTIVTFNTLINGLCKVGKFGQA 211
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G++PD Y TI+ G
Sbjct: 212 VELFDDMVARGYQPDVHTYTTIING 236
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TY+ L+ + D M + G KP++ +Y ILI+ C K + EA
Sbjct: 363 VEPNVVTYSSLMNGYSLQAEVVEARKLFDVM-ITKGCKPDVFSYNILINGYCKAKRIGEA 421
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G PD YNT++ G
Sbjct: 422 KQLFNEMIHQGLTPDIVSYNTLIDG 446
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PD+ T++ ++ CLC+ + + ++ +M GI+PN +TY ILI + C+T
Sbjct: 486 LLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEM-LEWGIEPNEITYNILIRSCCSTG 544
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +++L + + ++G PD + YN ++ +
Sbjct: 545 DTDRSVKLFAKMKENGLSPDLYAYNATIQSF 575
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + P YN ++ L K SL Y QMR+ G KP+ TY ILI VC +
Sbjct: 173 FLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSD-GCKPDRFTYNILIHGVCKKGVV 231
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+RLV + G +P+ F Y ++ G+
Sbjct: 232 DEAIRLVKQMEQEGNRPNVFTYTILIDGF 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L +++YN ++ CLCK R + F+ +M+ GI PNLVT+ + ++++
Sbjct: 421 LLSSVYSYNAVIDCLCKARRIENAAMFLTEMQ-DRGISPNLVTFNTFLSGYSVRGDVKKV 479
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++ L GFKPD ++ I+
Sbjct: 480 HGVLEKLLVHGFKPDVITFSLII 502
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+ PD FTYN L+ +CK + V QM G +PN+ TYTILID
Sbjct: 201 LKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQE-GNRPNVFTYTILIDG 259
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++ + + P+ T + G
Sbjct: 260 FLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHG 294
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++ YN ++ CK R + + M +G+KP+ TY+ LI + + EA
Sbjct: 561 LSPDLYAYNATIQSFCKMRKVKKAEELLKTM-LRIGLKPDNFTYSTLIKALSESGRESEA 619
Query: 66 MRLVSALSDSGFKPDCF 82
+ S++ G PD +
Sbjct: 620 REMFSSIERHGCVPDSY 636
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+ + + P Y LV+ L + + ++ QM G+ ++ +Y +ID +C +
Sbjct: 382 VSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVD-GLLSSVYSYNAVIDCLCKARR 440
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A ++ + D G P+ +NT + GY
Sbjct: 441 IENAAMFLTEMQDRGISPNLVTFNTFLSGY 470
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N + CL K L D S G+KP Y +L+ + N + E R
Sbjct: 353 PDSSTFNAAMSCLLKGHDLVETCRIFDGF-VSRGVKPGFNGYLVLVQALLNAQRFSEGDR 411
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G + YN ++
Sbjct: 412 YLKQMGVDGLLSSVYSYNAVI 432
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN LV LC+ + +N V+ M + + P++VTYT LI C + + EA+
Sbjct: 259 PDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEAL 318
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G KP+ YNT++KG
Sbjct: 319 DILEEMNGRGLKPNIVTYNTLIKG 342
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +TYN L++ CK + + F +M S P++VTY L+D +C ++ A
Sbjct: 222 VKPDTYTYNILIRGFCKNSMVDEGFYFFKEM-TSFDCDPDVVTYNTLVDGLCRAGKIKVA 280
Query: 66 MRLVSALSD--SGFKPDCFVYNTIMKGY 91
LV+ +S PD Y T+++GY
Sbjct: 281 HNLVNGMSKKCKDLSPDVVTYTTLIRGY 308
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TY L++ C+ + + + +++M G+KPN+VTY LI +C +
Sbjct: 292 KDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGR-GLKPNIVTYNTLIKGLCEAQKWD 350
Query: 64 EAMRLVSAL-SDSGFKPDCFVYNTIMKGY 91
+ ++ + D G PD +NT++ +
Sbjct: 351 KMKEILEQMKGDGGSIPDACTFNTLINSH 379
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TYN L+K LC+ + + ++QM+ G P+ T+ LI++ C NL
Sbjct: 327 RGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLD 386
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA ++ + D Y+ +++
Sbjct: 387 EAFKVFENMKKLEVSADSASYSVLIR 412
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N ++ L K D+M + G+KP+ TY ILI C + E
Sbjct: 186 VSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEG 245
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ PD YNT++ G
Sbjct: 246 FYFFKEMTSFDCDPDVVTYNTLVDG 270
>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 447
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKC-------RSLTTVYNFVDQMRASLGIKPNLVTYTILI 53
++ K + PD++TY LV LCK R ++ V++ +D+MR G +++TY+ LI
Sbjct: 259 MVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDR-GQPADVITYSSLI 317
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
D +C +L A+ L + + D G +P+ F + ++ G
Sbjct: 318 DGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDG 354
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TY+ L+ LCK L ++M+ GI+PN+ T+TIL+D + L++A
Sbjct: 307 PADVITYSSLIDGLCKNGHLDRAIALFNKMKDQ-GIRPNMFTFTILLDGLWKGGRLKDAQ 365
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ L G+ + + YN ++ G+
Sbjct: 366 EVFQDLLTKGYHLNVYTYNVMINGH 390
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP T N L+K LC + +F D++ A G + N V Y LI+ VC + R A+
Sbjct: 125 PPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ-GFQLNQVGYGTLINGVCKIGDTRAAI 183
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L+ + KPD +Y+TI+
Sbjct: 184 KLLKKIDGRLTKPDVVMYSTII 205
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ ++ LCK + ++ Y +M GI ++VTY LI C L+EA+
Sbjct: 196 PDVVMYSTIIDALCKYQLVSEAYGLFSEMTVK-GISADVVTYNTLIYGFCIVGKLKEAIG 254
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + PD + Y ++
Sbjct: 255 LLNVMVLKTINPDVYTYTILV 275
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+FT N L+ C C +T ++ + ++ G P+ VT LI +C
Sbjct: 84 LELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKR-GYPPSTVTLNTLIKGLCLKG 142
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ L GF+ + Y T++ G
Sbjct: 143 QVKKALHFHDKLLAQGFQLNQVGYGTLING 172
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++FT+ L+ L K L V Q + G N+ TY ++I+ C L
Sbjct: 339 QGIRPNMFTFTILLDGLWKGGRLKDAQE-VFQDLLTKGYHLNVYTYNVMINGHCKQGLLE 397
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ ++S + D+G P+ F + TI+
Sbjct: 398 EALTMLSKMEDNGCIPNAFTFETII 422
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y L+ +CK + ++ L KP++V Y+ +ID +C + + EA L S +
Sbjct: 166 YGTLINGVCKIGDTRAAIKLLKKIDGRL-TKPDVVMYSTIIDALCKYQLVSEAYGLFSEM 224
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+ G D YNT++ G+
Sbjct: 225 TVKGISADVVTYNTLIYGF 243
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + PP I +N ++ K + +TV + GI+P+L T ILI+ C+
Sbjct: 51 LCMRHTPP-IIQFNKILDSFAKMKHYSTVS--LSHRLELKGIQPDLFTLNILINCFCHMG 107
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +++ + G+ P NT++KG
Sbjct: 108 QITFGFSVLAKILKRGYPPSTVTLNTLIKG 137
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L++ LC+ + T +D+M + G P+ +TY L++++C NLREA R
Sbjct: 271 PDVETYSILMQGLCRKSQVKTALGVLDEM-LNKGYVPDALTYNTLLNSLCRKMNLREAYR 329
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + G PD YNT++ G+
Sbjct: 330 LLSKMKVMGCNPDVINYNTVITGF 353
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK+L P+ TYN L++ C L+ Y ++M G P++ TY+IL+ +
Sbjct: 225 LFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQ-GCIPDVETYSILMQGL 283
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C ++ A+ ++ + + G+ PD YNT++
Sbjct: 284 CRKSQVKTALGVLDEMLNKGYVPDALTYNTLL 315
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC+ +L Y + +M+ +G P+++ Y +I C +A +
Sbjct: 306 PDALTYNTLLNSLCRKMNLREAYRLLSKMKV-MGCNPDVINYNTVITGFCREGRALDACQ 364
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + ++G P+ Y T++ G
Sbjct: 365 ILRDMPENGCLPNALSYRTLVNG 387
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN ++ C+ + M + G PN ++Y L++ +CN EA
Sbjct: 341 PDVINYNTVITGFCREGRALDACQILRDMPEN-GCLPNALSYRTLVNGLCNEGKFDEAKD 399
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
V + +GF P +Y+ ++ G
Sbjct: 400 FVEEMISNGFIPHISIYHLLITG 422
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N L+ L + + L T + ++ GI PN TY ILI C++ L A L + +
Sbjct: 206 FNVLLIVLIEHKCLETALSLFKKLH-EFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKM 264
Query: 73 SDSGFKPDCFVYNTIMKG 90
G PD Y+ +M+G
Sbjct: 265 HKQGCIPDVETYSILMQG 282
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN LV CK SL + V+ M+ + + P+L TY ILI+ +CN ++RE
Sbjct: 271 LVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT-NVLPDLCTYNILINGLCNAGSMREG 329
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ A+ +PD YNT++ G
Sbjct: 330 LELMDAMKSLKLQPDVVTYNTLIDG 354
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T N L+ LCK NF + + + + VTY +I C K L+EA
Sbjct: 589 PDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMISAFCKDKKLKEAYD 646
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S + + G +PD F YN+ +
Sbjct: 647 LLSEMEEKGLEPDRFTYNSFI 667
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD TYN ++K + K L+ + + M+ + G+ PN VTY L+ C +L+E
Sbjct: 235 KVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKN-GLVPNRVTYNNLVYGYCKLGSLKE 293
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++V + + PD YN ++ G
Sbjct: 294 AFQIVELMKQTNVLPDLCTYNILING 319
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ L+K K L+ + +M GIK N +T ++D +C + L EA
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREM-GQKGIKMNTITLNTILDALCKERKLDEAHN 472
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+++ GF D Y T++ G+
Sbjct: 473 LLNSAHKRGFIVDEVTYGTLIMGF 496
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LC S+ +D M+ SL ++P++VTY LID EA +
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMK-SLKLQPDVVTYNTLIDGCFELGLSLEARK 366
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G K + +N +K
Sbjct: 367 LMEQMENDGVKANQVTHNISLK 388
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N +K LCK V V ++ G P++VTY LI +L A+ ++
Sbjct: 382 THNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMRE 441
Query: 72 LSDSGFKPDCFVYNTIM 88
+ G K + NTI+
Sbjct: 442 MGQKGIKMNTITLNTIL 458
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ + + D+M+ + I P + T+ LI +C+ AM
Sbjct: 485 DEVTYGTLIMGFFREEKVEKALEMWDEMK-KVKITPTVSTFNSLIGGLCHHGKTELAMEK 543
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L++SG PD +N+I+ GY
Sbjct: 544 FDELAESGLLPDDSTFNSIILGY 566
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ T+N LV C L +++M + + P+ VTY ++ + L + L
Sbjct: 203 NVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKEL 262
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +G P+ YN ++ GY
Sbjct: 263 LLDMKKNGLVPNRVTYNNLVYGY 285
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F Y+ L+ LCK L + M++S +KP+LV Y IL+D +C + NL++A
Sbjct: 97 PDLFAYSILLDGLCKQGYLGKAFRLFRAMQSS-SLKPDLVMYNILVDAMCKSGNLKDARE 155
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L G +P+ +Y TI+ G
Sbjct: 156 LFSELFVKGLQPNVQIYTTIING 178
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD TYN L+ LC+ L + M + G P+L Y+IL+D +C
Sbjct: 55 MILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKN-GNLPDLFAYSILLDGLCKQG 113
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A RL A+ S KPD +YN ++
Sbjct: 114 YLGKAFRLFRAMQSSSLKPDLVMYNILV 141
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ YN LV +CK +L ++ G++PN+ YT +I+ +C L EA
Sbjct: 130 LKPDLVMYNILVDAMCKSGNLKDARELFSELFVK-GLQPNVQIYTTIINGLCKEGLLDEA 188
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G PD F YN I++G+
Sbjct: 189 LEAFRNMEEDGCPPDEFSYNVIIRGF 214
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD+F YN L+ CK + ++M G+ P+ VTY LI +C
Sbjct: 20 MITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQ-GLTPDKVTYNTLIHGLCQLG 78
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LREA L + +G PD F Y+ ++ G
Sbjct: 79 RLREAQDLFKNMHKNGNLPDLFAYSILLDG 108
>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F++N L+K LCK + D+M ++G+ PNLVTYT ++ + +L A +
Sbjct: 156 PNVFSFNILIKALCKKNDVENALKVFDEM-PTMGMIPNLVTYTTILGGFVSRGDLVNAEK 214
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ S +SD G+ PD Y +M GY
Sbjct: 215 VFSEISDKGWLPDATTYTVLMVGY 238
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + L+ LCK + D+ G P+L+TY LI +C L EA R
Sbjct: 331 PDNAIMSTLIHWLCKEGKVWEARKLFDEFEQ--GTIPSLMTYNTLIAGMCERGELNEAGR 388
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + +P+ F YN ++KG+
Sbjct: 389 LWDDMVEKRCRPNAFTYNMLIKGF 412
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD TY L+ CK L+ +D M + G++PN VTY ++ID C K
Sbjct: 222 KGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYN-GVEPNEVTYGVMIDAYCKEKKSG 280
Query: 64 EAMRLVSALSDSGFKP 79
EA L+ + D F P
Sbjct: 281 EARNLIDDMLDKKFLP 296
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ +C+ L D M +PN TY +LI ++E +R
Sbjct: 365 PSLMTYNTLIAGMCERGELNEAGRLWDDM-VEKRCRPNAFTYNMLIKGFMKAGVVKEGVR 423
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + D+G P+ Y +++G
Sbjct: 424 ILEEMLDNGCLPNKSTYTLLIEG 446
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 40/86 (46%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + N L+ + + V + + + G+ PN+ ++ ILI +C ++ A
Sbjct: 118 MQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVENA 177
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G P+ Y TI+ G+
Sbjct: 178 LKVFDEMPTMGMIPNLVTYTTILGGF 203
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L++ L + + +M S+G KPN+VT++ILI +C + EA+
Sbjct: 276 PDIITYNILLRTLLSRGKWSEGEKLISEM-ISIGCKPNVVTHSILIGTLCRDGKVEEAVN 334
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ + G KPD + Y+ ++ G+
Sbjct: 335 LLRSMKEKGLKPDAYCYDPLIAGF 358
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ C L +++ +P ++TYTILI+ + AM+
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKD-NCEPTVITYTILIEATILDGGIDVAMK 229
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD YN I++G
Sbjct: 230 LLDEMLSKGLEPDTLTYNAIIRG 252
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + + PD TYN L+ CLC+ + + M++ +PN+V+Y I++ +C
Sbjct: 444 LLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGR-YRPNVVSYNIILLGLCKVN 502
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ +++A+++ G +P+ Y +++G
Sbjct: 503 RANDAIEVLAAMTEKGCQPNETTYILLIEG 532
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF++L P + TY L++ + +D+M S G++P+ +TY +I +
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEM-LSKGLEPDTLTYNAIIRGM 253
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
C + +A L+ +LS G KPD YN +++
Sbjct: 254 CKEMMVDKAFELLRSLSSRGCKPDIITYNILLR 286
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD + Y+ L+ C+ L F++ M S G P++V Y ++ +C T
Sbjct: 342 KGLKPDAYCYDPLIAGFCREGRLDLATEFLEYM-ISDGCLPDIVNYNTIMAGLCRTGKAD 400
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
+A+ + L + G P+ YNT+
Sbjct: 401 QALEVFEKLDEVGCPPNVSSYNTL 424
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ LC+ +++ +G PN+ +Y L + ++ + A+
Sbjct: 381 PDIVNYNTIMAGLCRTGKADQALEVFEKL-DEVGCPPNVSSYNTLFSALWSSGDRYRALE 439
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ L + G PD YN+++
Sbjct: 440 MILKLLNQGIDPDEITYNSLI 460
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + + TYN L+ LC+ + V ++ +G+ PN+VTY ILI+ C+ + +
Sbjct: 292 KGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVN-KVGLSPNIVTYNILINGFCDVRKMD 350
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL + L SG P YNT++ GY
Sbjct: 351 SAVRLFNQLKSSGLSPTLVTYNTLIAGY 378
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I TYN L+ C R + + +Q+++S G+ P LVTY LI +NL A
Sbjct: 329 LSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSS-GLSPTLVTYNTLIAGYSKVENLAGA 387
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ LV + + P Y ++ +
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAF 413
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TY L+ + M S G+ P++ TY++L+ +C N++EA
Sbjct: 399 IAPSKVTYTILIDAFARLNHTEKACEMHSLMEKS-GLVPDVYTYSVLLHGLCVHGNMKEA 457
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +L + +P+ +YNT++ GY
Sbjct: 458 SKLFKSLGEMHLQPNSVIYNTMIHGY 483
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ + YN L+ C + + +MR GI ++TY ILI +C K EA++
Sbjct: 261 PNAYAYNCLISEYCNDGMVDKAFKVFAEMREK-GIACGVMTYNILIGGLCRGKKFGEAVK 319
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV ++ G P+ YN ++ G+
Sbjct: 320 LVHKVNKVGLSPNIVTYNILINGF 343
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 2 IFKQLPP----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
IF +L D +++ ++K C+ + + M G+ PN+V YT LID C
Sbjct: 146 IFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLL-AMLEEFGLSPNVVIYTTLIDGCC 204
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A L ++ G P+ Y+ +M G+
Sbjct: 205 KDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGF 238
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L P+ YN ++ CK S +++M S G+ PN+ ++ I +C + +E
Sbjct: 468 HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQS-GMVPNVASFCSTIGLLCRDEKWKE 526
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A L+ + +SG KP +Y + K
Sbjct: 527 AELLLGQMINSGLKPSVSLYKMVHK 551
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y L+ CK ++ N +M LG+ PN TY++L++ RE
Sbjct: 189 LSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMN-RLGLVPNPHTYSVLMNGFFKQGLQREG 247
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + SG P+ + YN ++ Y
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEY 273
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ K + + M+ S GI PN Y LI CN + +A
Sbjct: 224 LVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRS-GIVPNAYAYNCLISEYCNDGMVDKA 282
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + + + G YN ++ G
Sbjct: 283 FKVFAEMREKGIACGVMTYNILIGG 307
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN LV CK SL + V+ M+ + I P+L TY ILI+ VCN ++RE
Sbjct: 271 LVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT-NILPDLCTYNILINGVCNAGSIREG 329
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + +PD YNT++ G
Sbjct: 330 LELMDVMKSLKLQPDVVTYNTLIDG 354
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++K + K L+ V + + M+ + G+ PN VTY L+ C +L+EA +
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDVKDLLLDMKRN-GLVPNRVTYNNLVYGYCKLGSLKEAFQ 296
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V + + PD YN ++ G
Sbjct: 297 IVELMKQTNILPDLCTYNILING 319
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ +C S+ +D M+ SL ++P++VTY LID EA +
Sbjct: 308 PDLCTYNILINGVCNAGSIREGLELMDVMK-SLKLQPDVVTYNTLIDGCFELGLSLEAKK 366
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G KP+ +N +K
Sbjct: 367 LMEQMENDGVKPNQVTHNISLK 388
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T N L+ LCK NF + + + + VTY +I C K L+EA
Sbjct: 589 PDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV--DTVTYNTMISAFCKDKKLKEAYD 646
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S + + +PD F YN+I+
Sbjct: 647 LLSEMEEKRLEPDRFTYNSII 667
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L PD+ TYN L+ + ++QM G+KPN VT+ I + +C + E
Sbjct: 340 KLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMEND-GVKPNQVTHNISLKWLCKEEKREE 398
Query: 65 AMRLVSALSD-SGFKPDCFVYNTIMKGY 91
R V L + GF PD Y+T++K Y
Sbjct: 399 VTRKVKELVEMHGFSPDIVTYHTLIKAY 426
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ L+K K L+ + +M GIK N +T ++D +C + + EA
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREM-GQKGIKMNTITLNTILDALCKERKVDEAHN 472
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G+ D Y T++ GY
Sbjct: 473 LLDSAHKRGYIVDEVTYGTLIMGY 496
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N +K LCK V V ++ G P++VTY LI +L A+
Sbjct: 378 PNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALE 437
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G K + NTI+
Sbjct: 438 MMREMGQKGIKMNTITLNTIL 458
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ + + + D+M+ + I P + T+ LI +C+ AM
Sbjct: 485 DEVTYGTLIMGYFREEKVEKAFEMWDEMK-RIKITPTVTTFNSLIGGLCHHGKTELAMEK 543
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L++SG PD +N+I+ GY
Sbjct: 544 FDELAESGLLPDDCTFNSIILGY 566
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ T+N LV C L +++M + + P+ VTY ++ + L + L
Sbjct: 203 DVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDL 262
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +G P+ YN ++ GY
Sbjct: 263 LLDMKRNGLVPNRVTYNNLVYGY 285
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TY+ L+ L K ++ VDQM G+ PN+ TY ++D +C T +
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR-GVPPNICTYNSILDALCKTHQVD 452
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ D GF+PD Y+ ++KG
Sbjct: 453 KAIALLTKFKDKGFQPDISTYSILIKG 479
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD++T+N LV CK + D M GIKPN VTY L+D C K
Sbjct: 286 MILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ-GIKPNFVTYNSLMDGYCLVK 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + ++ G PD Y+ ++ G+
Sbjct: 345 EVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP+I TYN ++ LCK + + + + G +P++ TY+ILI +C + L
Sbjct: 429 RGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDK-GFQPDISTYSILIKGLCQSGKLE 487
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ L G+ D + Y +++G+
Sbjct: 488 DARKVFEDLLVKGYNLDVYAYTIMIQGF 515
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY+ L+ C L + ++M IKP++ T+ IL++ C
Sbjct: 251 MVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILE-NIKPDVYTFNILVNAFCKDG 309
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++E + + G KP+ YN++M GY
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ +CK + + ++ +M S GI P++VTY+ LI C L++A+
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEM-VSKGISPDVVTYSALISGFCILGKLKDAID 281
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + KPD + +N ++ +
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAF 305
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK + + ++ +L ++PN+V Y +ID++C K + EA L
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNL-VQPNVVMYNTIIDSMCKVKLVNEAFDL 247
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + G PD Y+ ++ G+
Sbjct: 248 FSEMVSKGISPDVVTYSALISGF 270
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ KQ + P+ TYN L+ C + + + + M A G+ P++ +Y+I+I+ C
Sbjct: 320 MMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM-AQGGVNPDIQSYSIMINGFCKI 378
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K EAM L + PD Y++++ G
Sbjct: 379 KKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TY+ L+K LC+ L + + G ++ YTI+I C
Sbjct: 464 KGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVK-GYNLDVYAYTIMIQGFCVEGLFN 522
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ L+S + D+G PD Y I+
Sbjct: 523 EALALLSKMEDNGCIPDAKTYEIII 547
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L K LC + + F D++ A LG + ++Y LI +C R A+
Sbjct: 153 PDTITFTTLSKGLCLKGQIQQAFLFHDKVVA-LGFHFDQISYGTLIHGLCKVGETRAALD 211
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + + +P+ +YNTI+
Sbjct: 212 LLQRVDGNLVQPNVVMYNTII 232
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + P F +N ++ L K + TV ++ Q GIKPNLV ILI+ C
Sbjct: 76 LLRRNTTPPAFEFNKILGSLVKSKHYHTVL-YLSQKMEFRGIKPNLVNCNILINCFCQLG 134
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + + G+ PD + T+ KG
Sbjct: 135 LIPFAFSVFAKILKMGYVPDTITFTTLSKG 164
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ + P++ N L+ C C+ + ++ ++ +G P+ +T+T L +C +
Sbjct: 113 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKI-LKMGYVPDTITFTTLSKGLCLKGQI 171
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
++A + GF D Y T++ G
Sbjct: 172 QQAFLFHDKVVALGFHFDQISYGTLIHG 199
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TY L++ +CK +D+MRA G PN+VTY ++I+ +C
Sbjct: 202 MLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK-GCTPNIVTYNVIINGMCREG 260
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A ++ LS GF+PD Y T++KG
Sbjct: 261 RVDDAREFLNRLSSYGFQPDTVSYTTVLKG 290
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ T+N LV C+ + V+QM G PNL+TY L+D +
Sbjct: 514 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH-GCTPNLITYNTLLDGITKDC 572
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N EA+ L+ L +G PD Y++I+
Sbjct: 573 NSEEALELLHGLVSNGVSPDIVTYSSII 600
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY +++ LC + + +D M G +P++VTYT+L++ VC + +AM
Sbjct: 174 PDAYTYTPIIRGLCDRGRVGEALSLLDDM-LHRGCQPSVVTYTVLLEAVCKSTGFGQAME 232
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G P+ YN I+ G
Sbjct: 233 VLDEMRAKGCTPNIVTYNVIING 255
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F +P P+ TY L+ LC L + +M PN+VT+ +L+ C
Sbjct: 478 LFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK-DCAPNVVTFNVLVSFFCQK 536
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ LV + + G P+ YNT++ G
Sbjct: 537 GLMDEAIELVEQMMEHGCTPNLITYNTLLDG 567
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+F YN LV C+ L + AS+ + P+ TYT +I +C+ + EA+ L
Sbjct: 143 DVFAYNTLVAGYCRYGQLDAARRLI----ASMPVAPDAYTYTPIIRGLCDRGRVGEALSL 198
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G +P Y +++
Sbjct: 199 LDDMLHRGCQPSVVTYTVLLEA 220
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 8 PDIFTYNFLVKCLCK-CRS---LTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
P++ TYN L+ + K C S L ++ V S G+ P++VTY+ +I + +
Sbjct: 556 PNLITYNTLLDGITKDCNSEEALELLHGLV-----SNGVSPDIVTYSSIIGVLSREDRVE 610
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+++ + D G +P +YN I+
Sbjct: 611 EAIKMFHIVQDLGMRPKAVIYNKIL 635
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ T++ LV+ C+ + ++QM G N I+I+ +C +
Sbjct: 310 KNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGH-GCAANTTLCNIVINTICKQGRVD 368
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + ++ + G PD Y T++KG
Sbjct: 369 DAFQFLNNMGSYGCSPDTISYTTVLKG 395
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP+ T+N + LC+ + ++QM + G + N+VTY L++ C
Sbjct: 412 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM-SEHGCEVNIVTYNALVNGFCVQG 470
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L ++ KP+ Y T++ G
Sbjct: 471 RVDSALELFYSMP---CKPNTITYTTLLTG 497
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S G P++ T LI N+C +A R++ A SG D F YNT++ GY
Sbjct: 102 SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGY 154
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y ++K LC+ + +M PN VT+ I +C + +A
Sbjct: 384 PDTISYTTVLKGLCRAERWEDAKELLKEM-VRKNCPPNEVTFNTFICILCQKGLIEQATM 442
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S+ G + + YN ++ G+
Sbjct: 443 LIEQMSEHGCEVNIVTYNALVNGF 466
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N ++ +CK + + F++ M S G P+ ++YT ++ +C + +A L+ +
Sbjct: 355 NIVINTICKQGRVDDAFQFLNNM-GSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 413
Query: 74 DSGFKPDCFVYNTIM 88
P+ +NT +
Sbjct: 414 RKNCPPNEVTFNTFI 428
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TY L+ LCK +L + +M+ S +KPNLV YTILID++C +++
Sbjct: 305 PNIMTYGVLLDGLCKHGNLEEAFALFQEMQRST-VKPNLVIYTILIDSLCKCGKIKDGKE 363
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L S L D G KP+ + Y ++
Sbjct: 364 LFSRLIDEGLKPNVYTYTALV 384
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+++TYN ++ L K F+ QM +G PN+V Y+ LID C
Sbjct: 158 MLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQME-KVGCVPNVVNYSTLIDGYCLRG 216
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + G P+ + Y ++M GY
Sbjct: 217 QMDEARSVFDLMVSKGCTPNVYTYTSLMNGY 247
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y L+ LCKC + ++ G+KPN+ TYT L+ +C + EA +
Sbjct: 340 PNLVIYTILIDSLCKCGKIKDGKELFSRL-IDEGLKPNVYTYTALVGALCKEGLIIEAHK 398
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD YN I++G+
Sbjct: 399 LFRKMEEDGCTPDKCAYNVIIQGF 422
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L PDI T+ ++ LC+ R L F + + G PN++TY +L+D +C NL
Sbjct: 266 KGLVPDIVTFTTIISGLCRAGRPLAAQQLF--RYICAHGHTPNIMTYGVLLDGLCKHGNL 323
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
EA L + S KP+ +Y ++
Sbjct: 324 EEAFALFQEMQRSTVKPNLVIYTILI 349
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + DI + + L+ C C + + + ++ LG++P++VT+T L++ +C +
Sbjct: 90 FLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKI-LKLGLEPSIVTFTTLLNGLCMEGKM 148
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+ M L + G +P+ + YN I+
Sbjct: 149 DQVMMLYDDMLVRGLQPNVYTYNVII 174
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+++TY L+ CK + +D+ G+ P++VT+T +I +C
Sbjct: 228 MVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRK-GLVPDIVTFTTIISGLCRAG 286
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +L + G P+ Y ++ G
Sbjct: 287 RPLAAQQLFRYICAHGHTPNIMTYGVLLDG 316
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI + L P+++TY LV LCK + + +M G P+ Y ++I K
Sbjct: 368 LIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEED-GCTPDKCAYNVIIQGFLQHK 426
Query: 61 NLREAMRLVSALSDSGFKPD 80
+ A +LV + + GF D
Sbjct: 427 DPSMARQLVEEMVNRGFSAD 446
>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Glycine max]
Length = 626
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD+ TYN LV CK R L + ++ ++ G+ PNL+T+T+L++ +C ++
Sbjct: 277 EGFEPDLVTYNTLVNSYCKKRRLEDAF-YLYKIMYIRGVMPNLITHTVLMNGLCEEGKVK 335
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + G PD YNT++ GY
Sbjct: 336 EAHQLFHQMVHRGIDPDVVSYNTLVSGY 363
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T+N + LCK V F+D+M G +P+LVTY L+++ C + L +A L
Sbjct: 249 YTFNIMTHVLCKDGDTDKVTRFLDKMEEE-GFEPDLVTYNTLVNSYCKKRRLEDAFYLYK 307
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G P+ + +M G
Sbjct: 308 IMYIRGVMPNLITHTVLMNG 327
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ N L+ L + + + ++M LGI N T+ I+ +C + + R
Sbjct: 211 PNVIACNCLLSGLSRFNYIGQCWAVYEEM-GRLGIHRNAYTFNIMTHVLCKDGDTDKVTR 269
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + GF+PD YNT++ Y
Sbjct: 270 FLDKMEEEGFEPDLVTYNTLVNSY 293
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN LV+ LCK ++ +M + NLV Y +I +C EA
Sbjct: 456 PKINTYNKLVESLCKFNNVEEALILKSEM-VKRSMILNLVAYRAVISCLCRVNRTLEAEG 514
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + SG PD + ++ GY
Sbjct: 515 LLEEMVSSGILPDVEISRALINGY 538
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+ L+ LC+ + + QM GI P++V+Y L+ C ++
Sbjct: 316 PNLITHTVLMNGLCEEGKVKEAHQLFHQM-VHRGIDPDVVSYNTLVSGYCREGKMQMCRS 374
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD I++G+
Sbjct: 375 LLHEMIGNGICPDSVTCRLIVEGF 398
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ +CK R + + MRA+ G PN++T++ LI +C T L +A+
Sbjct: 218 PDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA-GYVPNVITFSTLIHGLCRTGELEKALE 276
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ ++G KP+ + Y T++ G
Sbjct: 277 VFGSMLEAGCKPNKYTYTTLISG 299
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD YN L+ CK S+ +M G++P +VT+ LID C L A
Sbjct: 321 IPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRA 380
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
LV+ + G D Y ++ G
Sbjct: 381 NELVAEMGTKGLAADSCTYRILIAG 405
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T++ L+ LC+ L M + G KPN TYT LI +C + + +A
Sbjct: 253 PNVITFSTLIHGLCRTGELEKALEVFGSMLEA-GCKPNKYTYTTLISGLCRAEKVIQARE 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L ++ + PD YN+++ GY
Sbjct: 312 LFEKMTQACIPPDAVAYNSLIAGY 335
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++FTY+ ++K L K Y +++M A+ G P++ + ++ + N+
Sbjct: 4 KNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAA-GCNPDVFAFNGVMQGFARSNNME 62
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + +SG+KPD Y+ ++ G
Sbjct: 63 KAREVYQHMVESGYKPDNVSYHILIHG 89
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + L+ LC+ + QM G +PN+ Y +L+ +C++ L +A
Sbjct: 148 PDRLMFYELILGLCQAGKVKDASERFKQMPKH-GCQPNVPVYNVLLHGLCSSGQLEQANT 206
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + PD YNT++
Sbjct: 207 LFAEMKSHSCSPDVVTYNTLL 227
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F +N +++ + ++ M S G KP+ V+Y ILI + L E+++
Sbjct: 43 PDVFAFNGVMQGFARSNNMEKAREVYQHMVES-GYKPDNVSYHILIHGLAKIGKLDESLK 101
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++S + G P Y+++++
Sbjct: 102 ILSEMVMRGQTPSMQAYSSLVRA 124
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P I T+N L+ CK L V +M + G+ + TY ILI + L EA
Sbjct: 357 LQPTIVTFNTLIDGFCKLGKLGRANELVAEM-GTKGLAADSCTYRILIAGLSRATKLDEA 415
Query: 66 MRLVSALSDSGFKPD 80
+ + + + F D
Sbjct: 416 LEVYKQMREKKFLLD 430
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK + +DQM+ S + P++VTY+ +I+ +C + L EA +
Sbjct: 265 PDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQK 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G PD Y TI+ G
Sbjct: 325 LLDRMCKAGCNPDVVTYTTIIDG 347
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY ++ LCKC L + M+ + G PN+VTYT LI +C + + EA R
Sbjct: 336 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA-GCAPNVVTYTTLISGLCKARKVDEAER 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + ++G P+ YNT++ G
Sbjct: 395 VMEEMRNAGCPPNLVTYNTMVNG 417
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TY+ L+ LCK + +++M+AS G+ P+ TY+ LI +C
Sbjct: 153 MVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKAS-GVTPDAFTYSALIHGLCKAD 211
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +++ ++ SG PD VY++I+ +
Sbjct: 212 KIEEAEQMLRRMAGSGCTPDVVVYSSIIHAF 242
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N LV CK ++ + M A G++PN+VTY+ LID +C ++ EA
Sbjct: 125 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK-GMRPNVVTYSALIDGLCKSQKFLEAKE 183
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + SG PD F Y+ ++ G
Sbjct: 184 VLEEMKASGVTPDAFTYSALIHG 206
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ ++ LCK L +D+M G P++VTYT +ID +C L EA
Sbjct: 301 PDVVTYSTVINGLCKSDMLVEAQKLLDRM-CKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 359
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G P+ Y T++ G
Sbjct: 360 LLQGMKRAGCAPNVVTYTTLISG 382
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ + + L +++MR G PNLVTY +L+D +C + A
Sbjct: 55 PNVVTYTALIAAFARAKKLEEAMKLLEEMRER-GCPPNLVTYNVLVDALCKLSMVGAAQD 113
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + + GF P+ +N+++ G+
Sbjct: 114 VVKKMIEGGFAPNVMTFNSLVDGF 137
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TYN LV LCK + + V +M G PN++T+ L+D C N+ +A
Sbjct: 89 PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG-GFAPNVMTFNSLVDGFCKRGNVDDAR 147
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + G +P+ Y+ ++ G
Sbjct: 148 KLLGIMVAKGMRPNVVTYSALIDG 171
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK R + +++MR + G PNLVTY +++ +C + ++EA +
Sbjct: 371 PNVVTYTTLISGLCKARKVDEAERVMEEMRNA-GCPPNLVTYNTMVNGLCVSGRIKEAQQ 429
Query: 68 LVSALSD--SGFKPDCFVYNTIM 88
LV + D + PD Y TI+
Sbjct: 430 LVQRMKDGRAECSPDAATYRTIV 452
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ L+ LCK + + +M S G P++V Y+ +I C + L EA +
Sbjct: 195 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGS-GCTPDVVVYSSIIHAFCKSGKLLEAQK 253
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + PD YNT++ G
Sbjct: 254 TLQEMRKQRKSPDVVTYNTVIDG 276
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+ ++ + L +D +R S+G PN+VTYT LI K L EAM+
Sbjct: 23 PDAFTHTPIITAMANAGDLDGA---MDHLR-SMGCDPNVVTYTALIAAFARAKKLEEAMK 78
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + + G P+ YN ++
Sbjct: 79 LLEEMRERGCPPNLVTYNVLV 99
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TY L++ +CK +D+MRA G PN+VTY ++I+ +C
Sbjct: 171 MLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK-GCTPNIVTYNVIINGMCREG 229
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A ++ LS GF+PD Y T++KG
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYTTVLKG 259
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ T+N LV C+ + V+QM G PNL+TY L+D +
Sbjct: 483 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH-GCTPNLITYNTLLDGITKDC 541
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N EA+ L+ L +G PD Y++I+
Sbjct: 542 NSEEALELLHGLVSNGVSPDIVTYSSII 569
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY +++ LC + + +D M G +P++VTYT+L++ VC + +AM
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDM-LHRGCQPSVVTYTVLLEAVCKSTGFGQAME 201
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G P+ YN I+ G
Sbjct: 202 VLDEMRAKGCTPNIVTYNVIING 224
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F +P P+ TY L+ LC L + +M PN+VT+ +L+ C
Sbjct: 447 LFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK-DCAPNVVTFNVLVSFFCQK 505
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ LV + + G P+ YNT++ G
Sbjct: 506 GLMDEAIELVEQMMEHGCTPNLITYNTLLDG 536
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+F YN LV C+ L + AS+ + P+ TYT +I +C+ + EA+ L
Sbjct: 112 DVFAYNTLVAGYCRYGQLDAARRLI----ASMPVAPDAYTYTPIIRGLCDRGRVGEALSL 167
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G +P Y +++
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEA 189
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 8 PDIFTYNFLVKCLCK-CRS---LTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
P++ TYN L+ + K C S L ++ V S G+ P++VTY+ +I + +
Sbjct: 525 PNLITYNTLLDGITKDCNSEEALELLHGLV-----SNGVSPDIVTYSSIIGVLSREDRVE 579
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+++ + D G +P +YN I+
Sbjct: 580 EAIKMFHIVQDLGMRPKAVIYNKIL 604
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ T++ LV+ C+ + ++QM G N I+I+ +C +
Sbjct: 279 KNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGH-GCAANTTLCNIVINTICKQGRVD 337
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + ++ + G PD Y T++KG
Sbjct: 338 DAFQFLNNMGSYGCSPDTISYTTVLKG 364
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP+ T+N + LC+ + ++QM + G + N+VTY L++ C
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM-SEHGCEVNIVTYNALVNGFCVQG 439
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L ++ KP+ Y T++ G
Sbjct: 440 RVDSALELFYSMP---CKPNTITYTTLLTG 466
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S G P++ T LI N+C +A R++ A SG D F YNT++ GY
Sbjct: 71 SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGY 123
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y ++K LC+ + +M PN VT+ I +C + +A
Sbjct: 353 PDTISYTTVLKGLCRAERWEDAKELLKEM-VRKNCPPNEVTFNTFICILCQKGLIEQATM 411
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S+ G + + YN ++ G+
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGF 435
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N ++ +CK + + F++ M S G P+ ++YT ++ +C + +A L+ +
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNM-GSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382
Query: 74 DSGFKPDCFVYNTIM 88
P+ +NT +
Sbjct: 383 RKNCPPNEVTFNTFI 397
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TY L++ +CK +D+MRA G PN+VTY ++I+ +C
Sbjct: 171 MLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK-GCTPNIVTYNVIINGMCREG 229
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A ++ LS GF+PD Y T++KG
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYTTVLKG 259
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ T+N LV C+ + V+QM G PNL+TY L+D + N
Sbjct: 483 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH-GCTPNLITYNTLLDGITNDC 541
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N EA+ L+ L +G PD Y++I+
Sbjct: 542 NSEEALELLHGLVSNGVSPDIVTYSSII 569
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY +++ LC + + +D M G +P++VTYT+L++ VC + +AM
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDM-LHRGCQPSVVTYTVLLEAVCKSTGFGQAME 201
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G P+ YN I+ G
Sbjct: 202 VLDEMRAKGCTPNIVTYNVIING 224
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F +P P+ TY L+ LC L + +M PN+VT+ +L+ C
Sbjct: 447 LFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK-DCAPNVVTFNVLVSFFCQK 505
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ LV + + G P+ YNT++ G
Sbjct: 506 GLMDEAIELVEQMMEHGCTPNLITYNTLLDG 536
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+F YN LV C+ L + AS+ + P+ TYT +I +C+ + EA+ L
Sbjct: 112 DVFAYNTLVAGYCRYGQLDAARRLI----ASMPVAPDAYTYTPIIRGLCDRGRVGEALSL 167
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G +P Y +++
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEA 189
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ T++ LV+ C+ + ++QM G N I+I+ +C +
Sbjct: 279 KNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGH-GCAANTTLCNIVINTICKQGRVD 337
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + ++ + G PD Y T++KG
Sbjct: 338 DAFQFLNNMGSYGCSPDTISYTTVLKG 364
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP+ T+N + LC+ + ++QM + G + N+VTY L++ C
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM-SEHGCEVNIVTYNALVNGFCVQG 439
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L ++ KP+ Y T++ G
Sbjct: 440 RVDSALELFYSMP---CKPNTITYTTLLTG 466
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 8 PDIFTYNFLVKCLCK-CRS---LTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
P++ TYN L+ + C S L ++ V S G+ P++VTY+ +I + +
Sbjct: 525 PNLITYNTLLDGITNDCNSEEALELLHGLV-----SNGVSPDIVTYSSIIGVLSREDRVE 579
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+++ + D G +P +YN I+
Sbjct: 580 EAIKMFHIVQDLGMRPKAVIYNKIL 604
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S G P++ T LI N+C +A R++ A SG D F YNT++ GY
Sbjct: 71 SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGY 123
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y ++K LC+ + +M PN VT+ I +C + +A
Sbjct: 353 PDTISYTTVLKGLCRAERWEDAKELLKEM-VRKNCPPNEVTFNTFICILCQKGLIEQATM 411
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S+ G + + YN ++ G+
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGF 435
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N ++ +CK + + F++ M S G P+ ++YT ++ +C + +A L+ +
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNM-GSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382
Query: 74 DSGFKPDCFVYNTIM 88
P+ +NT +
Sbjct: 383 RKNCPPNEVTFNTFI 397
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I TY+ L+ LCK ++ V++ +D+MR GI N++TY LID +C +L
Sbjct: 368 KNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR-GIPANVITYNSLIDGLCKNGHLD 426
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + + D G +P F + ++ G
Sbjct: 427 RAIALFNKMKDQGIRPCSFTFTILLDG 453
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +P ++ TYN L+ LCK L ++M+ GI+P T+TIL+D +C L+
Sbjct: 403 RGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQ-GIRPCSFTFTILLDGLCKGGRLK 461
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L G+ D + YN ++ G+
Sbjct: 462 DAQEAFQDLLTKGYHLDVYKYNVMINGH 489
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TY L+ C L +++M I PN+ TY IL+D +C ++
Sbjct: 228 KGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKT-INPNVYTYNILVDALCKEGKVK 286
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +++ + + KPD Y+T+M GY
Sbjct: 287 EAKNVLAVMLKACVKPDVITYSTLMDGY 314
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+++TYN LV LCK + N + M + +KP+++TY+ L+D
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKAC-VKPDVITYSTLMDGYFLVY 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A + +A+S G PD Y ++ G+
Sbjct: 319 ELKKAQHVFNAMSLMGVTPDVHSYTILINGF 349
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ LCK + ++ Y +M A GI ++VTYT LI C L+EA+
Sbjct: 197 PNVEMYNTIIDALCKYQLVSEAYGLFSEMTAK-GISADVVTYTTLIYGFCIASKLKEAIG 255
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + P+ + YN ++
Sbjct: 256 LLNEMVLKTINPNVYTYNILV 276
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T+ L+K LC + +F D++ A GIK + V+Y LI+ VC + R A++
Sbjct: 127 PHTITFTTLIKGLCLKGQVNKALHFHDKLLAQ-GIKFDQVSYGTLINGVCKIGDTRGAIK 185
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
LV + KP+ +YNTI+
Sbjct: 186 LVRKIDGRLTKPNVEMYNTII 206
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T N L+ C C +T ++ + ++ G +P+ +T+T LI +C
Sbjct: 85 LELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKR-GYQPHTITFTTLIKGLCLKG 143
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L G K D Y T++ G
Sbjct: 144 QVNKALHFHDKLLAQGIKFDQVSYGTLING 173
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + + D +Y L+ +CK V ++ L KPN+ Y +ID +C +
Sbjct: 155 LLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRL-TKPNVEMYNTIIDALCKYQ 213
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L S ++ G D Y T++ G+
Sbjct: 214 LVSEAYGLFSEMTAKGISADVVTYTTLIYGF 244
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + PP I +N ++ K + +T + ++ GI+P+L+T ILI+ C+
Sbjct: 51 LCMRHTPP-IIQFNKILDSFAKIKHYSTAVSLSHRLELK-GIQPDLITLNILINCFCHMG 108
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +++ + G++P + T++KG
Sbjct: 109 QITFGFSVLAKILKRGYQPHTITFTTLIKG 138
>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 805
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +YN L+ CK L+ + +DQMR G PN++TY L+ +C ++ +A+
Sbjct: 428 PNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDR-GQPPNVITYNSLLHALCKNHHVDKAIA 486
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV+ D G +PD YNT++ G
Sbjct: 487 LVNNFKDQGIQPDMHTYNTLVDG 509
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-------ASLGIKPNLVTYTILI 53
++ K + P+++T+N LV LCK + N + +M + KPN V+Y LI
Sbjct: 378 MVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLI 437
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
D C + L A +L+ + D G P+ YN+++
Sbjct: 438 DGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHA 474
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 7 PPDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
PP++ TYN L+ LCK +++ V NF DQ GI+P++ TY L+D +C L
Sbjct: 462 PPNVITYNSLLHALCKNHHVDKAIALVNNFKDQ-----GIQPDMHTYNTLVDGLCKQGRL 516
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
++A + L G+ + YN ++ G
Sbjct: 517 KDAQLIFQDLLIKGYNLPTWTYNIMING 544
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN LV LCK L + Q G TY I+I+ +C L
Sbjct: 494 QGIQPDMHTYNTLVDGLCKQGRLKDA-QLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLD 552
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L+S + D+G PD Y TI+
Sbjct: 553 EAETLLSKMEDNGCIPDVVTYQTIIHA 579
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T L+K LC + F D + A LG N VTY ILI+ +C R A++
Sbjct: 259 PNTITLTTLIKGLCLNGKVNEALLFHDHVLA-LGFHLNHVTYGILINGLCKMGQTRAALQ 317
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + +Y+T++ G
Sbjct: 318 VLRQIEGKLVNTNVVMYSTVIDG 340
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L+ LCK + + D+M G+ PN VT+T LID C L A
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEAHKLFDEM-LDRGLVPNGVTFTTLIDGHCKNGKLDLA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + + GF PD YNT++ G
Sbjct: 261 MEIYKQMLSQGFSPDXITYNTLIYG 285
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ K L + M AS G++P++ TY++LI+ +C + EA
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDEA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + D G P+ + T++ G+
Sbjct: 226 HKLFDEMLDRGLVPNGVTFTTLIDGH 251
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I+KQ+ PD TYN L+ LCK L + D+M G+KP+ +TYT LID
Sbjct: 263 IYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMK-GLKPDKITYTTLIDGS 321
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +L A + + D Y ++ G
Sbjct: 322 CKEGDLETAFEYRKRMIKENIRLDDVSYTALISG 355
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ T+ L+ CK L QM S G P+ +TY LI +C
Sbjct: 232 MLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQM-LSQGFSPDXITYNTLIYGLCKKG 290
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L +A L +S G KPD Y T++ G
Sbjct: 291 DLXQAKDLXDEMSMKGLKPDKITYTTLIDG 320
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D + G++P++V++ L++ +L E
Sbjct: 133 PASLYFFNILMDRFCKEGEIRLAQSVFDGI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ SG +PD + Y+ ++ G
Sbjct: 192 RLKSAMHASGVQPDVYTYSVLING 215
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL----VTYTILIDNVCNT 59
K L PD TY L+ CK L T + + +M IK N+ V+YT LI +C
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFEYRKRM-----IKENIRLDDVSYTALISGLCKE 359
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ + G KPD Y +M +
Sbjct: 360 GRSVDAEKMLREMLSVGLKPDTGTYTIVMHEF 391
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D +Y L+ LCK + +M S+G+KP+ TYTI++ C
Sbjct: 337 MIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREM-LSVGLKPDTGTYTIVMHEFCKNG 395
Query: 61 NLREAMRLVSALSDSGFKP 79
+++ +L+ + G P
Sbjct: 396 DVKMGSKLLKEMQRDGHVP 414
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ LCK V M G PN++TY I++D++C K +
Sbjct: 464 QGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEK-GCTPNIITYNIIVDSLCKAKKVN 522
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L+ + G KPD + T+ G+
Sbjct: 523 EAVDLLGEMKSKGLKPDVVSFGTLFTGF 550
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K PPDIFTYN L+ CK L + V++M S G+ P+++TY L++ +C
Sbjct: 427 IAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRM-WSQGMTPDVITYNTLLNGLCKAGK 485
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
E M + A+ + G P+ YN I+
Sbjct: 486 SEEVMEIFKAMEEKGCTPNIITYNIIV 512
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I+TYN ++ LCK ++ + VD A G P++ TY LID C L A
Sbjct: 398 PNIWTYNLVINGLCKMGCVSDASHLVDDAIAK-GCPPDIFTYNTLIDGYCKQLKLDSATE 456
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V+ + G PD YNT++ G
Sbjct: 457 MVNRMWSQGMTPDVITYNTLLNG 479
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P I YN L+K L + + +++M A G PN+ TY ++I+ +C +
Sbjct: 359 KGLRPSIVLYNTLIKGLSQQGLILPALQLMNEM-AENGCLPNIWTYNLVINGLCKMGCVS 417
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A LV G PD F YNT++ GY
Sbjct: 418 DASHLVDDAIAKGCPPDIFTYNTLIDGY 445
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ ++ L CK + Y +M + TY I++ N+
Sbjct: 534 KGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMN 593
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM+L S + +SG PD + Y ++ G+
Sbjct: 594 MAMKLFSVMKNSGCDPDNYTYRVVIDGF 621
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSL------TTVYNFVDQMRASL--GIKPNLVTYTILIDNVCNT 59
P++FT+N V+ LC+ +L + V + +R + G +P+ +TY +ID C
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A R++ GFKPD F Y +++ G+
Sbjct: 309 GMVQDANRVLKDAVFKGFKPDEFTYCSLINGF 340
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ +N LV LCK + + ++ G+ PNL T+ I + +C L A
Sbjct: 212 LCPDVVAFNKLVHVLCKKGLVFESERLLGKV-LKRGVCPNLFTFNIFVQGLCREGALDRA 270
Query: 66 M---RLVSA------LSDSGFKPDCFVYNTIMKGY 91
+ R+V A + + GF+PD YN+I+ GY
Sbjct: 271 VRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGY 305
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ CK + + N V + G KP+ TY LI+ C + AM
Sbjct: 293 PDDLTYNSIIDGYCK-KGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMA 351
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G +P +YNT++KG
Sbjct: 352 VFKDGLGKGLRPSIVLYNTLIKG 374
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 2 IFKQLPPDIFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+FK PD FTY L+ CK R++ F D + G++P++V Y LI +
Sbjct: 322 VFKGFKPDEFTYCSLINGFCKDGDPDRAMAV---FKDGL--GKGLRPSIVLYNTLIKGLS 376
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A++L++ ++++G P+ + YN ++ G
Sbjct: 377 QQGLILPALQLMNEMAENGCLPNIWTYNLVING 409
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + ++N ++ L + + +MR G++ ++ TYTI I + C T A+R
Sbjct: 109 PSVHSHNAIMNILVEFGYHNQAHKVYMRMR-DRGVQSDVYTYTIRIKSFCKTARPYAALR 167
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G + Y T++ G
Sbjct: 168 LLRNMPELGCDSNAVAYCTVVAG 190
>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
Length = 846
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + + + NF+++M A+ G +P++ TY I + ++C+ L +A
Sbjct: 631 LTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAA-GCEPDIFTYNIWMHSLCSNHMLNQA 689
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ L G PD YNT+M G
Sbjct: 690 GKVLDELVAMGCPPDSVTYNTLMDG 714
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI+T N L+ LC+ L V N + M S G+ P+ VTY +I+ C K++ A
Sbjct: 596 LVPDIYTSNILIDGLCREGKLEMVDNLLLDM-CSNGLTPDTVTYNTIINAYCRAKDMNSA 654
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ + +G +PD F YN M
Sbjct: 655 MNFMNKMLAAGCEPDIFTYNIWM 677
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTYN ++ LC+ ++T MR + G+ P++ T ILID +C L
Sbjct: 563 PNNFTYNSIISALCRAGNMTEALKLQQNMRQN-GLVPDIYTSNILIDGLCREGKLEMVDN 621
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD YNTI+ Y
Sbjct: 622 LLLDMCSNGLTPDTVTYNTIINAY 645
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN L+K C + ++M S G +P +VTY IL+D +C+ + EA R
Sbjct: 252 PNVCSYNILIKGHCVFGWSRDAFKLFEEMHRS-GCEPTVVTYNILVDVLCHEGRMPEARR 310
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L ++ G + + +N ++ GY
Sbjct: 311 LFDEMAQVGIQANTITFNVLIDGY 334
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD ++ + LC+ + Y +M A GI PN TY +I +C N+ EA
Sbjct: 526 LQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTAR-GIVPNNFTYNSIISALCRAGNMTEA 584
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++L + +G PD + N ++ G
Sbjct: 585 LKLQQNMRQNGLVPDIYTSNILIDG 609
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN + LC L +D++ A +G P+ VTY L+D +C + L AM
Sbjct: 668 PDIFTYNIWMHSLCSNHMLNQAGKVLDELVA-MGCPPDSVTYNTLMDGIC-SDVLDRAMI 725
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L F+P+ N + +
Sbjct: 726 LTGRLIKMAFQPNTITLNVFLSHF 749
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN LV LC + D+M A +GI+ N +T+ +LID T + +A
Sbjct: 287 PTVVTYNILVDVLCHEGRMPEARRLFDEM-AQVGIQANTITFNVLIDGYAKTGRMDQACA 345
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G PD +N I G
Sbjct: 346 AYREMKARGLVPDSCTFNIIAAG 368
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N ++ C R L V + + + GI PN+ +Y ILI C R+A +
Sbjct: 217 PSLATFNAMILGFCH-RGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFK 275
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + SG +P YN ++
Sbjct: 276 LFEEMHRSGCEPTVVTYNILV 296
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
LG++P+ + ++ I+ +C + EA + + ++ G P+ F YN+I+
Sbjct: 524 LGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSII 572
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 30 YNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+N ++M A+ G +P+L T+ +I C+ +R A L+ + + G P+ YN ++K
Sbjct: 204 WNVFEEM-AARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIK 262
Query: 90 GY 91
G+
Sbjct: 263 GH 264
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+P PD FTYN LV +C+ + V QM + GI+PN+ TYT+L+D
Sbjct: 197 LRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGA-GIRPNVFTYTMLVDG 255
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
CN +A+ + + + G P+ Y T++ G
Sbjct: 256 FCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHG 290
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+P P YN L+ + ++ T Y QM A G +P+ TY L+ V
Sbjct: 163 VFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPAD-GCQPDCFTYNTLVHGV 221
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + EA+RLV + +G +P+ F Y ++ G+
Sbjct: 222 CQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGF 256
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI T+ L+ LC L ++ ++M A G++PN TY +L+ +C+ ++ +A
Sbjct: 487 LIPDIITFTSLINGLCHTHQLDDAFDCFNEM-AEWGVRPNAHTYNVLMHALCSAGHVNKA 545
Query: 66 MRLVSALSDSGFKPDCFVYN 85
+ L++ + G PD + +N
Sbjct: 546 IDLLNKMKKDGITPDAYSFN 565
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNF--VDQMRASLGIKPNLVTYTILIDNVCNTKN 61
K + P++ T+N L+ K L V+N V +M G+ P+++T+T LI+ +C+T
Sbjct: 450 KGVLPNLVTFNTLISGYSK---LGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQ 506
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A + +++ G +P+ YN +M
Sbjct: 507 LDDAFDCFNEMAEWGVRPNAHTYNVLM 533
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L + +YN ++ C K ++ + +MR G+ PNLVT+ LI
Sbjct: 412 MVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREK-GVLPNLVTFNTLISGYSKLG 470
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A ++ L + G PD + +++ G
Sbjct: 471 NVHNAKAVLKMLMEHGLIPDIITFTSLING 500
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC + + +++M+ GI P+ ++ I + C K + +A
Sbjct: 524 PNAHTYNVLMHALCSAGHVNKAIDLLNKMKKD-GITPDAYSFNAPILSFCRMKKVDKARN 582
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ G PD + YN+++K
Sbjct: 583 IFNAMLRLGVVPDNYTYNSLIKA 605
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +++N + C+ + + N + M LG+ P+ TY LI +C+ + + EA
Sbjct: 557 ITPDAYSFNAPILSFCRMKKVDKARNIFNAM-LRLGVVPDNYTYNSLIKALCDERRIDEA 615
Query: 66 MRLVSALSDSG 76
++ + SG
Sbjct: 616 KEILLLMESSG 626
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P Y ++K L C+S + +++ +M G+ + +Y ++ID + +A
Sbjct: 384 PGFDVYIMVIKSLLGCKSSSKANHYLKRMVLD-GLLSGVTSYNMVIDCFVKAGAVDKAAE 442
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + + G P+ +NT++ GY
Sbjct: 443 IIKEMREKGVLPNLVTFNTLISGY 466
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PPD+ TY+ L+ LCK +++ + M G+ PN TY I+I C+
Sbjct: 229 MIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDK-GVMPNTRTYNIMIRGYCSLG 287
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+RL+ +S SG +PD Y +++ Y
Sbjct: 288 QLEEAVRLLKKMSGSGLQPDVVTYILLIQYY 318
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD N ++ LCK + +F D M +G+KPN+V+Y LID C
Sbjct: 474 MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFD-MVIHIGVKPNVVSYNTLIDGYCFVG 532
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+++ + G +PD + YN ++ GY
Sbjct: 533 KMDESIKQFDRMVSIGLRPDSWTYNALLNGY 563
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKPNLVTYTILI 53
++F+++P PD+F+YN L+K LC + + M A G PN+V+Y+ +I
Sbjct: 151 MVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTII 210
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
D + +A L + GF PD Y++++ G
Sbjct: 211 DGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDG 247
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 6 LPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD+ +Y+ ++ LCK R VY+F +QM S G+ PN++++T LI +C+ ++
Sbjct: 409 LRPDVVSYSTVIHILCKIGRVEDAVYHF-NQM-VSEGLSPNIISFTSLIHGLCSIGEWKK 466
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
L + + G PD NTIM
Sbjct: 467 VEELAFEMINRGIHPDAIFMNTIM 490
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN +++ C L + +M S G++P++VTY +LI C
Sbjct: 267 KGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS-GLQPDVVTYILLIQYYCKIGRCA 325
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + ++ G KP+ +Y+ ++ GY
Sbjct: 326 EARSVFDSMVRKGQKPNSTIYHILLHGY 353
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+K LC + + V + LG P++ +Y LI +C K +EA+ L+
Sbjct: 131 TLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLH 190
Query: 72 LS-DSGFK--PDCFVYNTIMKGY 91
++ D G+ P+ Y+TI+ G+
Sbjct: 191 MTADGGYNCSPNVVSYSTIIDGF 213
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV- 69
+ L++C C L + + +G + VT LI +C+ K +AM +V
Sbjct: 95 YIIGILIRCFCTVGRLDLAFA-AFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMVF 153
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ + G+ PD F YN ++KG
Sbjct: 154 RRMPELGYTPDVFSYNALIKG 174
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + TYN LV C+ + V +M GIKP+ VTYTILID + N+
Sbjct: 367 RGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEER-GIKPSKVTYTILIDTFARSDNME 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A++L S++ + G PD Y+ ++ G+
Sbjct: 426 TAIQLRSSMEELGLVPDVHTYSVLIHGF 453
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I TYN L+ LC+ +DQM++ + I PNL+TY LID C+ L +A+ L
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSYV-INPNLITYNTLIDGFCSVGKLGKALSL 360
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L G P YN ++ G+
Sbjct: 361 CRDLKSRGLSPSLVTYNVLVSGF 383
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ LCK + D+MR G+ N+VTY LI +C EA +
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFKVFDEMRER-GVSCNIVTYNTLIGGLCREMKANEANK 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + P+ YNT++ G+
Sbjct: 325 VMDQMKSYVINPNLITYNTLIDGF 348
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P TY L+ + ++ T M LG+ P++ TY++LI C +
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMETAIQLRSSME-ELGLVPDVHTYSVLIHGFCIKGQMN 460
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL ++ + +P+ +YNT++ GY
Sbjct: 461 EASRLFKSMVEKMLEPNEVIYNTMILGY 488
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C L + ++ S G+ P+LVTY +L+ C + A +
Sbjct: 336 PNLITYNTLIDGFCSVGKLGKALSLCRDLK-SRGLSPSLVTYNVLVSGFCRKGDTSGAAK 394
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V + + G KP Y ++
Sbjct: 395 MVKEMEERGIKPSKVTYTILI 415
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++++ ++K C+ + ++ + ++R G PN+V YT LID C + +A L
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELR-EFGFSPNVVIYTTLIDGCCKKGEIEKAKDL 220
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G + + Y ++ G
Sbjct: 221 FFEMGKFGLVANEWTYTVLIHG 242
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ YN ++ CK S M + PN+ +Y+ LI +C +
Sbjct: 469 MVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEK-ELAPNVASYSYLIRVLCKER 527
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L+EA LV + DSG P + N I +
Sbjct: 528 KLKEAEDLVEKMIDSGIDPSDTICNLISRA 557
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L + +TY L+ L K + ++M+ G+ PNL TY +++ +C ++A
Sbjct: 229 LVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEH-GVFPNLYTYNCVMNQLCKDGRTKDA 287
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + + G + YNT++ G
Sbjct: 288 FKVFDEMRERGVSCNIVTYNTLIGG 312
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y L+ CK + + +M G+ N TYT+LI + ++
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEM-GKFGLVANEWTYTVLIHGLFKNGIKKQGFE 254
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + G P+ + YN +M
Sbjct: 255 MYEKMQEHGVFPNLYTYNCVM 275
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD TYN L+ LC L +M A G P+LVTY+IL+D++C +L
Sbjct: 365 KEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVAR-GQMPDLVTYSILLDSLCKNCHLE 423
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ A+ S PD VYN I+ G
Sbjct: 424 EAMALLKAIEASNLNPDIQVYNIIIDG 450
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ ++ +V LCK +T + VD M G++P++VTYT L+D C
Sbjct: 257 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM-IQRGVEPDVVTYTTLMDGHCLQS 315
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + GF PD Y T++ GY
Sbjct: 316 EMDEAVKVFDMMVRKGFAPDVISYTTLINGY 346
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDIFTY LV LC V ++QM S I P++V ++ ++D +C
Sbjct: 222 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNS-KILPDVVIFSTVVDALCKEG 280
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +PD Y T+M G+
Sbjct: 281 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGH 311
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LCK R +T +N QM GI P++ TYT L+ +CN +
Sbjct: 194 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ-GISPDIFTYTSLVHALCNLCEWKHVTT 252
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + +S PD +++T++
Sbjct: 253 LLNQMVNSKILPDVVIFSTVV 273
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+++T N L+ C + ++ + ++ LG +P+ T+T LI +C + EA
Sbjct: 87 VPPNVYTLNILINSFCHLNRVGFAFSVLAKI-LKLGHQPDPTTFTTLIRGLCVEGKIGEA 145
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + D GF+P+ Y T++ G
Sbjct: 146 LHLFDKMIDEGFQPNVVTYGTLING 170
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK + + + M +P++V YT +ID++C +
Sbjct: 152 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG-NCQPDVVIYTSIIDSLCKDR 210
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA L S + G PD F Y +++
Sbjct: 211 QVTEAFNLFSQMVGQGISPDIFTYTSLV 238
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI YN ++ +C+ L + + +S G+ P++ TY I+I +C L EA
Sbjct: 437 LNPDIQVYNIIIDGMCRAGELEAARDLFSNL-SSKGLHPSVWTYNIMIHGLCKRGLLNEA 495
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + + PD YNTI +G+
Sbjct: 496 NKLFMEMDGNDCSPDGCTYNTIARGF 521
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ LC + + D+M G +PN+VTY LI+ +C N A+R
Sbjct: 124 PDPTTFTTLIRGLCVEGKIGEALHLFDKM-IDEGFQPNVVTYGTLINGLCKVGNTSAAIR 182
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +PD +Y +I+
Sbjct: 183 LLRSMEQGNCQPDVVIYTSII 203
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ TY L+ C + D M G P++++YT LI+ C
Sbjct: 292 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMM-VRKGFAPDVISYTTLINGYCKIH 350
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + + PD YNT+M G
Sbjct: 351 KIDKAMYLFEEMCRKEWIPDTKTYNTLMHG 380
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PP I + L+ + K + +TV + QM S G+ PN+ T ILI++ C+
Sbjct: 47 LLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMD-SFGVPPNVYTLNILINSFCHLN 105
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +++ + G +PD + T+++G
Sbjct: 106 RVGFAFSVLAKILKLGHQPDPTTFTTLIRG 135
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L LCK + + V +M G PNLVTY LID +C +A
Sbjct: 364 PDVVTYSILADGLCKRGRIDEAFELVKEMSGK-GCTPNLVTYNTLIDGLCKASKTEKAYE 422
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +L SGF PD Y I+ G
Sbjct: 423 LLESLVSSGFVPDVVTYTIIVDG 445
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TYN L+ LCK Y ++ + +S G P++VTYTI++D +C L
Sbjct: 395 KGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSS-GFVPDVVTYTIIVDGLCKEGRLD 453
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+++V + G P Y +M+G
Sbjct: 454 KALKMVEGMLKRGCTPSVITYTALMEG 480
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+FTYN L+ LCK + +M G+ P+ VT+ ++D +C
Sbjct: 255 RKVAPDVFTYNILIDGLCKASKTDKASEMLHEM-VDRGVTPDTVTFNSIMDGLCKAGKFE 313
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L++ +++ +P C YNT++ G
Sbjct: 314 RAHSLLAVMAERNCRPSCCTYNTLISG 340
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN L+ LCK +++ + VD+ +S G P++VTY+IL D +C + EA
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVDEFVSS-GFVPDVVTYSILADGLCKRGRIDEAFE 387
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV +S G P+ YNT++ G
Sbjct: 388 LVKEMSGKGCTPNLVTYNTLIDG 410
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN ++ LCK + + F++ M S G P++V+Y I+ID + +EA +
Sbjct: 571 PNIKTYNIVMDGLCKHGKVDEAFPFLESMH-SAGCVPDVVSYNIIIDGLFKASKPKEARQ 629
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G PD YNT+M +
Sbjct: 630 VLDQMIQAGIPPDAVTYNTLMAQF 653
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
IF+ +P PD YN ++ C+ F+ +M + P++ TY ILID +C
Sbjct: 217 IFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNER-KVAPDVFTYNILIDGLCKAS 275
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A ++ + D G PD +N+IM G
Sbjct: 276 KTDKASEMLHEMVDRGVTPDTVTFNSIMDG 305
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY+ ++K LC+ + + +D+ + G KP + YTIL C T L++A+
Sbjct: 158 PDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVR-GFKPEVSVYTILTRAFCKTGRLKDALE 216
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + PD YN I+ G+
Sbjct: 217 IFRNIP----SPDAIAYNAIIHGH 236
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN ++ L K +DQM GI P+ VTY L+ C + +A+
Sbjct: 606 PDVVSYNIIIDGLFKASKPKEARQVLDQM-IQAGIPPDAVTYNTLMAQFCKEERFDDAVG 664
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + +G PD YNT++ G
Sbjct: 665 ILKNMIKAGVDPDNVTYNTLISG 687
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD T+N ++ LCK ++ + M A +P+ TY LI +C +
Sbjct: 287 MVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM-AERNCRPSCCTYNTLISGLCKQQ 345
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A LV SGF PD Y+ + G
Sbjct: 346 NVDRAKDLVDEFVSSGFVPDVVTYSILADG 375
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TYN ++ CLCK + + D+M A GI + V+YT+LI +C
Sbjct: 843 MVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM-AVRGIVASSVSYTVLIYGLCGQG 901
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
+EA++++ ++ S + D + +
Sbjct: 902 RGKEALQVLEEMASSDCEIDDLKWEDV 928
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PD+ TY +V LCK L V+ M G P+++TYT L++ +C T
Sbjct: 427 LVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM-LKRGCTPSVITYTALMEGLCRTG 485
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + D Y +++ GY
Sbjct: 486 RVDEAHHIFKEMVSKDCTADALAYVSLVNGY 516
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I YN L+ CK L + N + M A G PN+ TY I++D +C + EA
Sbjct: 536 PYIDVYNALMDGYCKEGRLDEIPNVFEDM-ACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ +G PD YN I+ G
Sbjct: 595 FLESMHSAGCVPDVVSYNIIIDG 617
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +PPD TYN L+ CK + M G+ P+ VTY LI + T
Sbjct: 634 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM-IKAGVDPDNVTYNTLISGLSQTN 692
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIM 88
L +A L+ + +G C YNTI+
Sbjct: 693 RLGDAYELMHEMLRNGCVVSACTTYNTII 721
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD TYN L+ L + L Y + +M + + TY +ID +C
Sbjct: 669 MIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 728
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
L++A+ L+ ++ G + + YN
Sbjct: 729 CLKQALLLMDHMTGHGVEANTVTYN 753
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y ++ LCK L +M A G+ T+ +LID TK L EA+ L
Sbjct: 780 DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTL 839
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G P YN ++
Sbjct: 840 LGLMVQRGCSPSVITYNMVI 859
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D+ TYN LV LC+ + N V+ M + G+ PN+VTYT LI C + + EA+
Sbjct: 253 DVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALV 312
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G KP+ YNT++KG
Sbjct: 313 VLEEMTSRGLKPNMITYNTLVKG 335
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L++ C + + +++M S G+KPN++TY L+ +C L +
Sbjct: 287 LNPNVVTYTTLIRGYCMKQEVEEALVVLEEM-TSRGLKPNMITYNTLVKGLCEAHKLDKM 345
Query: 66 MRLVSAL-SDSGFKPDCFVYNTIM 88
++ + SD GF PD F +NTI+
Sbjct: 346 KDVLERMKSDGGFSPDTFTFNTII 369
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L++ CK + + F +M S ++VTY L+D +C +R A
Sbjct: 215 VSPDTCTYNVLIRGFCKNSMVDEGFRFFREME-SFNCDADVVTYNTLVDGLCRAGKVRIA 273
Query: 66 MRLVSALSD--SGFKPDCFVYNTIMKGY 91
LV+ + G P+ Y T+++GY
Sbjct: 274 RNLVNGMGKKCEGLNPNVVTYTTLIRGY 301
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ TYN LVK LC+ L + + +++M++ G P+ T+ +I C NL
Sbjct: 320 RGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLD 379
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+++ ++ D Y+T+++
Sbjct: 380 EALKVFESMKKFRIPADSASYSTLIR 405
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K D+M + G+ P+ TY +LI C + E
Sbjct: 179 VSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEG 238
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R + D YNT++ G
Sbjct: 239 FRFFREMESFNCDADVVTYNTLVDG 263
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TYN ++ LCK L + F ++M +KP+LVTY +LI+ + + EA
Sbjct: 228 VAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKER-VKPSLVTYGVLINGLVKLERFDEA 286
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +SD G+ P+ VYNT++ GY
Sbjct: 287 NCILKEMSDRGYAPNNVVYNTLIDGY 312
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ Y L+ CK + V + + +M + + PN +TYTI+I+ C N++
Sbjct: 646 EGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSIN-NVHPNKITYTIMINGHCKLGNMK 704
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L++ ++ G PD YN + G+
Sbjct: 705 AAAKLLNEMAQKGIVPDAVTYNALTNGF 732
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY ++ CK ++ +++M A GI P+ VTY L + C + EA++
Sbjct: 685 PNKITYTIMINGHCKLGNMKAAAKLLNEM-AQKGIVPDAVTYNALTNGFCKEGKMEEALK 743
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +S G D Y T++ G+
Sbjct: 744 VCDLMSTGGISLDDITYTTLIDGW 767
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L D +YN L+ CK + + ++M GI+P++ TY +L+ +CN
Sbjct: 468 MLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEM-VRRGIQPDMYTYNMLLHGLCNMG 526
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L +G PD + Y ++ GY
Sbjct: 527 KIEEAGGLWHECKKNGNFPDAYTYGIMIDGY 557
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD++TYN L+ LC + + + + G P+ TY I+ID C
Sbjct: 503 MVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKN-GNFPDAYTYGIMIDGYCKAN 561
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E +L + + + VY T+++ Y
Sbjct: 562 RVEEGEKLFQEMVTMKIEQNAVVYGTLIRAY 592
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY ++ CK + +M ++ I+ N V Y LI C N+REA R
Sbjct: 545 PDAYTYGIMIDGYCKANRVEEGEKLFQEM-VTMKIEQNAVVYGTLIRAYCENGNMREAFR 603
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G Y++++ G
Sbjct: 604 LRDDMRSRGIPQTSATYSSLIHG 626
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P + TY L+ L K + +M + G PN V Y LID C N+
Sbjct: 261 ERVKPSLVTYGVLINGLVKLERFDEANCILKEM-SDRGYAPNNVVYNTLIDGYCRIGNIS 319
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+++ + +G P+ N++++GY
Sbjct: 320 TALQIRDDMISNGISPNSVTCNSLIQGY 347
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++ ++ +V C + +M +G+ PN+VTY +I +C L EA +
Sbjct: 195 PDVYLFSTMVNAFCTGGRVDDAIELFRKME-KVGVAPNVVTYNNIIHGLCKNGRLDEAFQ 253
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ KP Y ++ G
Sbjct: 254 FKEKMEKERVKPSLVTYGVLING 276
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K + T N L+ LC+ S + +M G+ + ++Y LI C
Sbjct: 433 LLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLER-GLVLDSISYNTLILACCKEG 491
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E +L + G +PD + YN ++ G
Sbjct: 492 KVEEGFKLKEEMVRRGIQPDMYTYNMLLHG 521
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+++ P++ +YN ++ LCK + +M + G KPN+VTY +ID++C +
Sbjct: 192 MVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRG-KPNVVTYNTIIDSLCKDR 250
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+ +S + D G PD YNTI+ G+
Sbjct: 251 LVNEAVEFLSEMVDRGIPPDVVTYNTILHGF 281
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI------KPNLVTYTILIDNVC 57
K P+ +TYN L+ C ++N +D+ LGI PNL +Y ILI+ C
Sbjct: 335 KGAEPNAYTYNALMDGYC-------LHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYC 387
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+K + EA RL+S +S+ PD Y+T+M+G
Sbjct: 388 KSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQG 420
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD+ TYN ++ C L +M + P+ VT+ IL+D +C
Sbjct: 262 MVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM-VGRNVMPDTVTFNILVDGLCKEG 320
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + +++ G +P+ + YN +M GY
Sbjct: 321 MVSEARCVSETMTEKGAEPNAYTYNALMDGY 351
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ L++ LC+ N +M +S G+ P+L+ Y+IL+D C +L
Sbjct: 405 KNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSS-GLLPDLMAYSILLDGFCKHGHLD 463
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L+ + + KP+ +Y +++G
Sbjct: 464 EALKLLKEMHERRIKPNIILYTILIRG 490
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++++ N L+ CLC+ + + + +M LGI+P+ +T+ LI+ +CN ++EA+ L
Sbjct: 130 NVYSLNVLINCLCRLSHVDFAVSVMGKM-FKLGIQPDAITFNTLINGLCNEGKIKEAVGL 188
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + SG +P+ YNT++ G
Sbjct: 189 FNEMVWSGHEPNVISYNTVING 210
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ Y+ L+ CK L + +M IKPN++ YTILI + L A
Sbjct: 442 LLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERR-IKPNIILYTILIRGMFIAGKLEVA 500
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L S LS G +PD + YN ++KG
Sbjct: 501 KELFSKLSADGIRPDIWTYNVMIKG 525
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ +YN L+ CK + + + +M + + P+ VTY+ L+ +C
Sbjct: 367 MIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM-SEKNLTPDTVTYSTLMQGLCQVG 425
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
REA+ L + SG PD Y+ ++ G+
Sbjct: 426 RPREALNLFKEMCSSGLLPDLMAYSILLDGF 456
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD T+N LV LCK + + V + G +PN TY L+D C
Sbjct: 297 MVGRNVMPDTVTFNILVDGLCK-EGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHN 355
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA++++ + G P+ YN ++ GY
Sbjct: 356 QMDEAIKVLGIMIGKGCAPNLSSYNILINGY 386
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD T+N L+ LC + ++M S G +PN+++Y +I+ +C N A
Sbjct: 162 IQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS-GHEPNVISYNTVINGLCKNGNTIMA 220
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+R+ + + KP+ YNTI+
Sbjct: 221 VRVFRKMEQNRGKPNVVTYNTII 243
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+I Y L++ + L ++ A GI+P++ TY ++I +
Sbjct: 475 RRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSAD-GIRPDIWTYNVMIKGLLKEGLSD 533
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + D GF PD YN I++G+
Sbjct: 534 EAYEFFRKMEDDGFLPDSCSYNVIIQGF 561
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV K R + +++MR G+KP LVT+ I++ ++C L EA+
Sbjct: 347 PDVVTYNTLVDACFKWRCSSDALRLLEEMRDK-GVKPTLVTHNIVVKSLCKEGKLEEALG 405
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G PD YNT++ Y
Sbjct: 406 KLEKIAEEGLAPDVITYNTLIDAY 429
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L P I TYN L+K LC+ L + ++++ G+ P+ TY I+I C
Sbjct: 515 MIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEL-VEKGLVPDETTYNIIIHAYCKEG 573
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A R + + ++ FKPD NT+M G
Sbjct: 574 DLENAFRFHNKMVENSFKPDVVTCNTLMNG 603
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ CK ++ + +D+M G+K + T ++ N+C K +A
Sbjct: 415 LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK-GLKMDTFTLNTVLYNLCKMKRYEDA 473
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + GF PD Y T+M Y
Sbjct: 474 EELLHSPPQRGFVPDEVSYGTVMAAY 499
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + T+N +VK LCK L ++++ A G+ P+++TY LID C N+
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKI-AEEGLAPDVITYNTLIDAYCKAGNVA 436
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ + G K D F NT++
Sbjct: 437 KAFTLMDEMVGKGLKMDTFTLNTVL 461
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L LC+ + + D+M P++VTY L+D + +A+R
Sbjct: 311 PDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALR 370
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + D G KP +N ++K
Sbjct: 371 LLEEMRDKGVKPTLVTHNIVVK 392
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L++ +CK + T +F D M G++P+ TY +++ + EA +
Sbjct: 628 DVITYNTLIQSMCKVGDVDTALHFFDDMEVK-GLQPDAFTYNVVLSALSEAGRSEEAHNM 686
Query: 69 VSALSDSG 76
+ L+DSG
Sbjct: 687 LHKLADSG 694
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI +L P+ +T+N LV C +L + M+ G+ P+ VTY L++ C
Sbjct: 199 LIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQG-FGLSPDAVTYNTLLNAHCRKG 257
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA L++ + G P YNT++ +
Sbjct: 258 MLGEARALLARMKRDGIAPTQPTYNTLVSAF 288
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ C+ L + +M+ GI P TY L+ +++A
Sbjct: 239 LSPDAVTYNTLLNAHCRKGMLGEARALLARMKRD-GIAPTQPTYNTLVSAFARLGWIKQA 297
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++V +++ GF+PD YN + G
Sbjct: 298 TKVVESMTAYGFEPDLRTYNVLAVG 322
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD+ T N L+ LC L + G K +++TY LI ++C
Sbjct: 585 MVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESW-VEKGKKVDVITYNTLIQSMCKVG 643
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ A+ + G +PD F YN ++
Sbjct: 644 DVDTALHFFDDMEVKGLQPDAFTYNVVL 671
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y ++ K + DQM + P++ TY LI +C + L+EA+
Sbjct: 487 PDEVSYGTVMAAYFKEYNPEPALRLWDQM-IERKLIPSISTYNTLIKGLCRMERLKEAID 545
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ L + G PD YN I+ Y
Sbjct: 546 KLNELVEKGLVPDETTYNIIIHAY 569
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TYN LV + + V+ M A G +P+L TY +L +C + EA
Sbjct: 274 IAPTQPTYNTLVSAFARLGWIKQATKVVESMTA-YGFEPDLRTYNVLAVGLCQAGKVDEA 332
Query: 66 MRLVSALSD-SGFKPDCFVYNTIM 88
RL + S PD YNT++
Sbjct: 333 FRLKDEMERLSTALPDVVTYNTLV 356
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 2 IFKQLP----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+FK++ PD FTYN L+ LC+ R + N ++M + G+KP +VTY L+ C
Sbjct: 374 LFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNET-GVKPYIVTYHSLLLCYC 432
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA++L + + GF P+ Y T+MKG+
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGH 466
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++ K + + + QM A GI PN+VTYT ID C T A++
Sbjct: 524 PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAK-GIPPNIVTYTSFIDGYCKTSCCDLALK 582
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G +PD YN+++ G+
Sbjct: 583 MLNDVRCKGLRPDIAAYNSLIFGF 606
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PP+I TY + CK ++ +R G++P++ Y LI C N+
Sbjct: 555 KGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCK-GLRPDIAAYNSLIFGFCQEGNMS 613
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A++++ + G P+ VYN+ + GY
Sbjct: 614 HALQVLVLMLKDGLLPNISVYNSFITGY 641
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD T+ L LC+ + +D+M L I+PN++ Y +LI+
Sbjct: 692 MVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMN-RLDIRPNVLMYNMLINGYLRNG 750
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L+EA RL + + PD Y+ ++
Sbjct: 751 KLQEAFRLHDEMLERKIMPDDTTYDILV 778
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI YN L+ C+ +++ + M G+ PN+ Y I N K +
Sbjct: 590 KGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKD-GLLPNISVYNSFITGYKNLKMME 648
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+RL + G D Y T++ G+
Sbjct: 649 EALRLYEKMIKEGIDLDTATYTTLIDGF 676
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY L+K + Y + +M+ + G+ N TY LI+ +C +
Sbjct: 450 KGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQN-GVSCNDYTYNTLINGLCVVGRVC 508
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E ++ GF P YN+I+ G+
Sbjct: 509 EVGEMLKRFETEGFVPTAMTYNSIINGF 536
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D TY L+ K ++T +M A I P+ +T+T L +C
Sbjct: 657 MIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNI-PDHITFTALTHGLCRNG 715
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +A +L+ ++ +P+ +YN ++ GY
Sbjct: 716 DIDDARKLLDEMNRLDIRPNVLMYNMLINGY 746
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P D + ++ +++ K D+M AS I+P+ ++ I ++C ++
Sbjct: 171 KGRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPAS-EIEPDQRVCSVAIASLCKLRDAN 229
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ ++ + D+GF P F +N+++
Sbjct: 230 RALLVLRKMQDAGFVPWDFTFNSVV 254
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+I TYN L+ LCK +L D++ G+ PN+++Y ILID C
Sbjct: 770 MLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLK-GLAPNVISYNILIDGYCKNG 828
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N REA+ L + + G P Y+ ++ G+
Sbjct: 829 NTREALDLRNKMLKEGISPSLITYSALIYGF 859
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PD FTY L+ ++ ++ D+M G+ PN++TY LI+ +C +
Sbjct: 735 LLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKR-GLAPNIITYNALINGLCKSG 793
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL A +L L G P+ YN ++ GY
Sbjct: 794 NLDRAQKLFDKLHLKGLAPNVISYNILIDGY 824
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+ +N ++ CK + ++M+ LG +P+ VTY LID C N+ EA ++
Sbjct: 500 YAFNTMINGFCKMEKMIEAEETFNRMK-ELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKE 558
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ P +YN+++ G
Sbjct: 559 KMEKEAILPSIELYNSLIGG 578
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT + +V CK + +FV +M LG + N+VTY LID + ++ A
Sbjct: 216 PDVFTCSIMVNAYCKDGWVNVAVDFVKEM-DYLGFELNVVTYNSLIDGCVSIGDMERAEM 274
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + + G + ++KGY
Sbjct: 275 VLKLMGERGILRNKVTLTLLIKGY 298
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
PN V Y I I +C + + +A ++ S+L GF PD F Y T++ GY
Sbjct: 707 PNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGY 754
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K L P++ +YN L+ CK + + ++M GI P+L+TY+ LI C
Sbjct: 805 LHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKE-GISPSLITYSALIYGFCKQG 863
Query: 61 NLREAMRLVSALSD 74
++ +A L+ + +
Sbjct: 864 DMGKATNLLDEMRE 877
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T L+K C+ L + +M S G+ + Y +LID C + +A+RL
Sbjct: 290 TLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDE 349
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ + G + + F+ N ++ GY
Sbjct: 350 MLNVGLRMNLFICNALINGY 369
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I YN L+ L K + V + + +M G+ PN+VTY LI C+ L +A
Sbjct: 567 PSIELYNSLIGGLFKSKKTREVMDLLSEMCLK-GLSPNVVTYGTLIAGWCDEGRLDKAFT 625
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + GF P+ + + I+
Sbjct: 626 AYFDMIEKGFAPNVIICSKIV 646
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L P+ ++Y+ L+ C+ +T + ++M +GI+ N+VT+ L+ +C +
Sbjct: 389 DLEPESYSYSTLMDGFCREGLVTKAISVYNEM-LRVGIQSNVVTHNSLLKGLCRVGAFED 447
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A+ + + G PD Y T++
Sbjct: 448 ALHVWHLMLKRGVTPDEVSYCTLL 471
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ ++ T+N L+K LC+ + + V + G+ P+ V+Y L+D + A
Sbjct: 425 IQSNVVTHNSLLKGLCRVGAFEDALH-VWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRA 483
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + + G+ + +NT++ G+
Sbjct: 484 LALWNDILARGYGRSTYAFNTMINGF 509
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I N ++K LCK + + + V +M S GI P+L TY+++ID +C +K + +A R
Sbjct: 223 PKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAER 281
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G +P+ YN+++ GY
Sbjct: 282 VLEQMVEAGTRPNSITYNSLIHGY 305
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + ++ ++ LCK + + +D M G +PN+VT+ L++ C N+ EA
Sbjct: 505 PPGVKYFSSIINNLCKEGRVAEGKDIMDMM-VQTGQRPNVVTFNSLMEGYCLVGNMEEAF 563
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ A++ G +P+C++Y T++ GY
Sbjct: 564 ALLDAMASIGIEPNCYIYGTLVDGY 588
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ C ++ + +D M AS+GI+PN Y L+D C + +A+
Sbjct: 541 PNVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALT 599
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP +Y+ I+ G
Sbjct: 600 VFRDMLHKGVKPTSVLYSIILHG 622
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTY+ ++ LCK +++ ++QM G +PN +TY LI + E+
Sbjct: 256 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQM-VEAGTRPNSITYNSLIHGYSISGMWNES 314
Query: 66 MRLVSALSDSGFKP 79
+R+ +S G P
Sbjct: 315 VRVFKQMSSCGVIP 328
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 33/120 (27%)
Query: 4 KQLPPDIFTYNFLVKCLCKCR----------------------SLTTVYNFVDQMRA--- 38
+ PP I TYN L+ C + S + +Y FV
Sbjct: 150 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEVDKA 209
Query: 39 --------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G+ P ++ +I +C K + +A +V + DSG PD F Y+ I+ G
Sbjct: 210 HCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDG 269
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ +N L+ +C + + M+ G+ P+ VT+ +I ++C
Sbjct: 393 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRIG 451
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+ + + D G P VY +++G
Sbjct: 452 RLDDALHKFNHMVDIGVPPSEAVYGCLIQG 481
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T+N ++ + K D + ++ G+ PN+ TY+++I N+ ++ EA L
Sbjct: 682 DIITFNIVISAMFKVGRRQEAKELFDAI-STYGLVPNIQTYSMMITNLIKEESYEEADNL 740
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
++ SG D + N I++
Sbjct: 741 FISVEKSGHASDSRLLNHIVR 761
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD T+ ++ LC+ L + + M +G+ P+ Y LI CN L
Sbjct: 431 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHM-VDIGVPPSEAVYGCLIQGCCNHGELV 489
Query: 64 EAMRLVSALSDSGFKP 79
+A L+S + + P
Sbjct: 490 KAKELISEMMNKDIPP 505
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+FTY+ L+ LCK + D+M +G+ PN VT+T LID C +
Sbjct: 290 ERISPDVFTYSALINGLCKESRVEEANGLFDEM-CEMGLVPNGVTFTTLIDGQCKHGKID 348
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R + D G +PD YN ++ G
Sbjct: 349 LALRNFEIMKDRGIRPDLITYNALING 375
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+++ +N L+ CK + D++ + G++P++V++ LI C +KN+ E
Sbjct: 223 PPNVYLFNILMHGFCKIGDVMNARMVFDEI-SRRGLRPSVVSFNTLISGYCRSKNVEEGF 281
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L S + PD F Y+ ++ G
Sbjct: 282 VLKSVMESERISPDVFTYSALING 305
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ LC+ L +++M + G KP+ +T+T L+D C ++
Sbjct: 360 RGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGN-GFKPDKITFTTLMDGCCKDGDMD 418
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + + G + D + ++ G
Sbjct: 419 SALEIKDRMVEEGIELDDVAFTALISG 445
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I PD T+ L+ CK + + D+M GI+ + V +T LI +C
Sbjct: 392 MIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRM-VEEGIELDDVAFTALISGLCRDG 450
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+R+A R++ + +G KPD Y ++
Sbjct: 451 RVRDAERMLKDMLSAGHKPDDPTYTMVI 478
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ C CK + + +M+ G P +VTY L++ C ++ A
Sbjct: 469 PDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRD-GRVPGVVTYNALMNGFCKQGQMKNAKM 527
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ A+ + P+ +N ++ G+
Sbjct: 528 LLHAMLNMEVVPNDITFNILLDGH 551
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + L+ LC+ + + M S G KP+ TYT++ID C +++ +L
Sbjct: 435 DDVAFTALISGLCRDGRVRDAERMLKDM-LSAGHKPDDPTYTMVIDCFCKKGDVKMGAKL 493
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G P YN +M G+
Sbjct: 494 LKEMQRDGRVPGVVTYNALMNGF 516
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G PN+ + IL+ C ++ A + +S G +P +NT++ GY
Sbjct: 221 GYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGY 271
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 2 IFKQLP----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+FK++ PD FTYN L+ LC+ R + N ++M + G+KP +VTY L+ C
Sbjct: 374 LFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNET-GVKPYIVTYHSLLLCYC 432
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA++L + + GF P+ Y T+MKG+
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGH 466
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++ K + + + QM A GI PN+VTYT ID C T A++
Sbjct: 524 PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAK-GIPPNIVTYTSFIDGYCKTSCCDLALK 582
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G +PD YN+++ G+
Sbjct: 583 MLNDVRCKGLRPDIAAYNSLIYGF 606
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PP+I TY + CK ++ +R G++P++ Y LI C N+
Sbjct: 555 KGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCK-GLRPDIAAYNSLIYGFCQEGNMS 613
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A++++ + G P+ VYN+ + GY
Sbjct: 614 HALQVLVLMLKDGLLPNISVYNSFITGY 641
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD T+ L LC+ + +D+M L I+PN++ Y +LI+
Sbjct: 692 MVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMN-RLDIRPNVLMYNMLINGYLRNG 750
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L+EA RL + + PD Y+ ++
Sbjct: 751 KLQEAFRLHDEMLERKIMPDDTTYDILV 778
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI YN L+ C+ +++ + M G+ PN+ Y I N K +
Sbjct: 590 KGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKD-GLLPNISVYNSFITGYKNLKMME 648
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+R + G D Y T++ G+
Sbjct: 649 EALRFYEKMIKEGIDLDTATYTTLIDGF 676
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY L+K + Y + +M+ + G+ N TY LI+ +C +
Sbjct: 450 KGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQN-GVSCNDYTYNTLINGLCVVGRVC 508
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E ++ GF P YN+I+ G+
Sbjct: 509 EVGEMLKRFETEGFVPTAMTYNSIINGF 536
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D TY L+ K ++T +M A I P+ +T+T L +C
Sbjct: 657 MIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNI-PDHITFTALTHGLCRNG 715
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +A +L+ ++ +P+ +YN ++ GY
Sbjct: 716 DIDDARKLLDEMNRLDIRPNVLMYNMLINGY 746
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I YN + + + F ++M GI + TYT LID N+ A
Sbjct: 627 LLPNISVYNSFITGYKNLKMMEEALRFYEKMIKE-GIDLDTATYTTLIDGFSKDGNVTFA 685
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++L S + G PD + + G
Sbjct: 686 LKLYSEMVAKGNIPDHITFTALTHG 710
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P D + ++ +++ K D+M AS I+P+ ++ I ++C ++
Sbjct: 171 KGHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPAS-EIEPDQRVCSVAIASLCKLRDAN 229
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ ++ + D+GF P F +N+++
Sbjct: 230 RALLVLRKMQDAGFVPWDFTFNSVV 254
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV K R + +++MR G+KP LVT+ I++ ++C L EA+
Sbjct: 347 PDVVTYNTLVDACFKWRCSSDALRLLEEMRDK-GVKPTLVTHNIVVKSLCKEGKLEEALG 405
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G PD YNT++ Y
Sbjct: 406 KLEKIAEEGLAPDVITYNTLIDAY 429
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L P I TYN L+K LC+ L + +++ G+ P+ TY I+I C
Sbjct: 515 MIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEF-VEKGLVPDETTYNIIIHAYCKEG 573
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A R + + ++ FKPD NT+M G
Sbjct: 574 DLENAFRFHNKMVENSFKPDVVTCNTLMNG 603
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ CK ++ + +D+M G+K + T ++ N+C K +A
Sbjct: 415 LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK-GLKMDTFTLNTVLYNLCKMKRYEDA 473
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + GF PD Y T+M Y
Sbjct: 474 EELLHSPPQRGFVPDEVSYGTVMAAY 499
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + T+N +VK LCK L ++++ A G+ P+++TY LID C N+
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKI-AEEGLAPDVITYNTLIDAYCKAGNVA 436
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ + G K D F NT++
Sbjct: 437 KAFTLMDEMVGKGLKMDTFTLNTVL 461
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L LC+ + + D+M P++VTY L+D + +A+R
Sbjct: 311 PDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALR 370
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + D G KP +N ++K
Sbjct: 371 LLEEMRDKGVKPTLVTHNIVVK 392
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L++ +CK + T +F D M G++P+ TY +++ + EA +
Sbjct: 628 DVITYNTLIQSMCKVGDVDTALHFFDDMEVK-GLQPDAFTYNVVLSALSEAGRSEEAHNM 686
Query: 69 VSALSDSG 76
+ L+DSG
Sbjct: 687 LHKLADSG 694
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI +L P+ +T+N LV C +L + M+ G+ P+ VTY L++ C
Sbjct: 199 LIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQG-FGLSPDAVTYNTLLNAHCRKG 257
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA L++ + G P YNT++ +
Sbjct: 258 MLGEARALLARMKRDGIAPTQPTYNTLVSAF 288
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ C+ L + +M+ GI P TY L+ +++A
Sbjct: 239 LSPDAVTYNTLLNAHCRKGMLGEARALLARMKRD-GIAPTQPTYNTLVSAFARLGWIKQA 297
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++V +++ GF+PD YN + G
Sbjct: 298 TKVVESMTAYGFEPDLRTYNVLAMG 322
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD+ T N L+ LC L + G K +++TY LI ++C
Sbjct: 585 MVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESW-VEKGKKVDVITYNTLIQSMCKVG 643
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ A+ + G +PD F YN ++
Sbjct: 644 DVDTALHFFDDMEVKGLQPDAFTYNVVL 671
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TYN LV + + V+ M A G +P+L TY +L +C + EA
Sbjct: 274 IAPTQPTYNTLVSAFARLGWIKQATKVVESMTA-YGFEPDLRTYNVLAMGLCQAGKVDEA 332
Query: 66 MRLVSALSDSGFK-PDCFVYNTIM 88
RL + G PD YNT++
Sbjct: 333 FRLKDEMERLGTALPDVVTYNTLV 356
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y ++ K + DQM + P++ TY LI +C + L+EA+
Sbjct: 487 PDEVSYGTVMAAYFKEYNPEPALRLWDQM-IERKLIPSISTYNTLIKGLCRMERLKEAID 545
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G PD YN I+ Y
Sbjct: 546 KLNEFVEKGLVPDETTYNIIIHAY 569
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ ++N +V LCK +T ++ VD+M G++PN+VTYT L+D C
Sbjct: 262 MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKM-IQRGVEPNVVTYTALMDGHCLLS 320
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + G P+ YNT++ GY
Sbjct: 321 EMDEAVKVFDTMVCKGCMPNVISYNTLINGY 351
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PD TY+ L+ LC L +M A I PNLVTY IL+D +C + L
Sbjct: 370 QELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQI-PNLVTYRILLDYLCKNRYLA 428
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ A+ S PD V N + G
Sbjct: 429 EAMALLKAIEGSNLDPDIQVNNIAIDG 455
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++F YN ++ LCK R +T +N +M + GI P++ TY LI +CN
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEM-VTKGISPDIFTYNSLIHALCNLC 250
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ L++ + DS PD +NT++
Sbjct: 251 EWKHVATLLNEMVDSKIMPDVVSFNTVV 278
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY L+ LCK + + + M +PN+ Y +ID++C +
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSM-VQKNCQPNVFAYNTIIDSLCKDR 215
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L S + G PD F YN+++
Sbjct: 216 QVTEAFNLFSEMVTKGISPDIFTYNSLIHA 245
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI N + +C+ L + + +S G++P++ TY+I+I+ +C L EA
Sbjct: 442 LDPDIQVNNIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEA 500
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + ++G + +YNTI +G+
Sbjct: 501 SKLFREMDENGCTLNGCIYNTITRGF 526
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+I+T + L+ C + ++ + ++ LG +P+ T+T LI + + EA
Sbjct: 92 IPPNIYTLHILINSFCHLNRVGFAFSVLAKI-LKLGHQPDTATFTTLIRGIYVEGKIGEA 150
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+PD Y T++ G
Sbjct: 151 LHLFDKMIGEGFRPDVVTYGTLING 175
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ + + + D+M G +P++VTY LI+ +C N A+R
Sbjct: 129 PDTATFTTLIRGIYVEGKIGEALHLFDKMIGE-GFRPDVVTYGTLINGLCKVGNTSAAIR 187
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +P+ F YNTI+
Sbjct: 188 LLGSMVQKNCQPNVFAYNTII 208
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q PP +N L+ + K + +T+ + QM S GI PN+ T ILI++ C+ +
Sbjct: 56 QPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD-SFGIPPNIYTLHILINSFCHLNRVGF 114
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++ + G +PD + T+++G
Sbjct: 115 AFSVLAKILKLGHQPDTATFTTLIRG 140
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TY L+ C + D M G PN+++Y LI+ C +
Sbjct: 297 MIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCK-GCMPNVISYNTLINGYCKIQ 355
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + PD Y+T++ G
Sbjct: 356 RIDKAMYLFGEMCRQELIPDTVTYSTLIHG 385
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ ++N +V LCK +T ++ VD+M G++PN+VTYT L+D C
Sbjct: 262 MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKM-IQRGVEPNVVTYTALMDGHCLLS 320
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + G P+ YNT++ GY
Sbjct: 321 EMDEAVKVFDTMVCKGCMPNVISYNTLINGY 351
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PD TY+ L+ LC L +M A I PNLVTY IL+D +C + L
Sbjct: 424 QELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQI-PNLVTYRILLDYLCKNRYLA 482
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ A+ S PD V N + G
Sbjct: 483 EAMALLKAIEGSNLDPDIQVNNIAIDG 509
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++F YN ++ LCK R +T +N +M + GI P++ TY LI +CN
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEM-VTKGISPDIFTYNSLIHALCNLC 250
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ L++ + DS PD +NT++
Sbjct: 251 EWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY L+ LCK + + + M +PN+ Y +ID++C +
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSM-VQKNCQPNVFAYNTIIDSLCKDR 215
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L S + G PD F YN+++
Sbjct: 216 QVTEAFNLFSEMVTKGISPDIFTYNSLIHA 245
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+I+T + L+ C + ++ + ++ LG +P+ T+T LI +C + EA
Sbjct: 92 IPPNIYTLHILINSFCHLNRVGFAFSVLAKI-LKLGHQPDTATFTTLIRGICVEGKIGEA 150
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+PD Y T++ G
Sbjct: 151 LHLFDKMIGEGFRPDVVTYGTLING 175
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ +C + + D+M G +P++VTY LI+ +C N A+R
Sbjct: 129 PDTATFTTLIRGICVEGKIGEALHLFDKMIGE-GFRPDVVTYGTLINGLCKVGNTSAAIR 187
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +P+ F YNTI+
Sbjct: 188 LLGSMVQKNCQPNVFAYNTII 208
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI N + +C+ L + + +S G++P++ TY+I+I+ +C L EA
Sbjct: 496 LDPDIQVNNIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEA 554
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + ++G + +YNTI +G+
Sbjct: 555 SKLFREMDENGCTLNGCIYNTITRGF 580
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q PP +N L+ + K + +T+ + QM S GI PN+ T ILI++ C+ +
Sbjct: 56 QPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD-SFGIPPNIYTLHILINSFCHLNRVGF 114
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++ + G +PD + T+++G
Sbjct: 115 AFSVLAKILKLGHQPDTATFTTLIRG 140
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL------------------GI 42
++ K P++ +YN L+ CK + + ++ M G
Sbjct: 332 MVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGC 391
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
PN+++Y LI+ C + + +AM L + PD Y+T++ G
Sbjct: 392 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHG 439
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L PD+FTY L+ LCK L + D M GI PN+VTY LI+ +C
Sbjct: 643 LLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDM-CKKGINPNIVTYNALINGLCKLG 701
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L + + G + Y+TI+ GY
Sbjct: 702 EIAKARELFDGIPEKGLARNSVTYSTIIAGY 732
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + + +V LC C LT +M S G+KPN+V YT ++ +
Sbjct: 436 ENLTANAYMCGAIVNGLCHCGDLTRANELFQEM-ISWGLKPNIVIYTTIVKGLVKEGRFE 494
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++++ + D G PD F YNT++ G+
Sbjct: 495 EAIKILGVMKDQGLSPDVFCYNTVIIGF 522
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY L+ C+ + + + M G PNLVTY+++I +C ++ EA+
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEK-GCIPNLVTYSVVIAGLCRAGDVDEALE 288
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L ++++ G PD ++Y T++ G+
Sbjct: 289 LKRSMANKGLLPDNYIYATLIDGF 312
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TYN L+ LCK + D + G+ N VTY+ +I C + NL
Sbjct: 681 KGINPNIVTYNALINGLCKLGEIAKARELFDGIPEK-GLARNSVTYSTIIAGYCKSANLT 739
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + G PD FVY ++ G
Sbjct: 740 EAFQLFHGMKLVGVPPDSFVYCALIDG 766
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+F YN ++ CK + +++ +M A G+KPN+ TY I C ++
Sbjct: 506 QGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAK-GLKPNVYTYGAFIHGYCRAGEMQ 564
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A R + DSG P+ + ++ GY
Sbjct: 565 AAERSFIEMLDSGIAPNDVICTDLIDGY 592
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+N L+ K L Y V+ M + I PN VTYTILI+ C N++EA +L
Sbjct: 793 AFNALIDGFFKLGKLIEAYQLVEDMVDN-HITPNHVTYTILIEYHCTVGNIKEAEQLFME 851
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ P+ Y +++ GY
Sbjct: 852 MQKRNVMPNVLTYTSLLHGY 871
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ K + + ++M A IK N TY LI +C +L +A
Sbjct: 333 LKPDHVAYTALINGFVKQSDIGGAFQVKEEMFAR-KIKLNTFTYYALIHGLCKIGDLEKA 391
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L S ++ G KPD YN +++GY
Sbjct: 392 EDLFSEMTMMGIKPDIQTYNCLIEGY 417
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L P+++TY + C+ + +M S GI PN V T LID C
Sbjct: 538 MIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDS-GIAPNDVICTDLIDGYCKDG 596
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N +A + D G PD ++ ++ G
Sbjct: 597 NTTKAFAKFRCMLDQGVLPDVQTHSVLIHG 626
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ ++ LC+ + M A+ G+ P+ Y LID C K E
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSM-ANKGLLPDNYIYATLIDGFCRQKRSTEGKS 323
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G KPD Y ++ G+
Sbjct: 324 MLDEMYTMGLKPDHVAYTALINGF 347
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ + FTY L+ LCK L + +M +GIKP++ TY LI+ +N+
Sbjct: 366 RKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEM-TMMGIKPDIQTYNCLIEGYYKVQNME 424
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A L+ + + ++ I+ G
Sbjct: 425 KAYELLIEIKKENLTANAYMCGAIVNG 451
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L P+I Y +VK L K + M+ G+ P++ Y +I C
Sbjct: 468 MISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQ-GLSPDVFCYNTVIIGFCKAG 526
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E + + G KP+ + Y + GY
Sbjct: 527 KMEEGKSYLVEMIAKGLKPNVYTYGAFIHGY 557
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD ++ +V K + VD M S G+ YTILID +C
Sbjct: 887 MVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDM-LSEGVNVCKNLYTILIDALCKHN 945
Query: 61 NLREAMRLVSALSDSGFK 78
NL E ++++ + G K
Sbjct: 946 NLSEVLKVLDEVEKQGSK 963
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P I YN L+ C+ ++ N D + A G+ PN VTYT LID C ++ +A
Sbjct: 694 LEPGIVCYNALIDGFCRSGDISRARNVFDSILAK-GLVPNCVTYTALIDGNCKNGDITDA 752
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + D G PD FVYN + G
Sbjct: 753 FDLYKEMLDRGIAPDAFVYNVLATG 777
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++ LC+ ++ + F ++M G+ P+ TY L++ +C L+EA L+
Sbjct: 280 TYNVMISGLCRSGAVEEAFGFKEEM-VDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDE 338
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+S SG KP+ VY T++ G+
Sbjct: 339 MSCSGLKPNIVVYGTLVDGF 358
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ LCK L +D+M S G+KPN+V Y L+D EA
Sbjct: 309 LSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCS-GLKPNIVVYGTLVDGFMKEGKTAEA 367
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + +G +P+ +Y+ +++G
Sbjct: 368 FDILKEMISAGVQPNKIMYDNLIRG 392
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTYN L++ + + +++MR S GI PN+ +Y I+I+ +C +EA
Sbjct: 414 LRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNS-GILPNVYSYGIMINGLCQNGESKEA 472
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G KP+ F+Y ++ G+
Sbjct: 473 GNLLEEMISEGLKPNAFMYAPLIIGH 498
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY+ ++ CK R ++MR N VTY ++I +C + + EA
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRR-DCAMNEVTYNVMISGLCRSGAVEEAFG 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ D G PD F Y +M G
Sbjct: 300 FKEEMVDYGLSPDAFTYGALMNG 322
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F YN L+K L + + Q++ G+ P+ TY+ LI C T NL +A +
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKR-GLVPDEFTYSGLIHGYCKTGNLEKADQ 579
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG KP+ Y +++GY
Sbjct: 580 LLRQMLNSGLKPNADTYTDLLEGY 603
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ Y+ L+ LCK + +D+M A G++P +V Y LID C + ++ A
Sbjct: 659 LVPDLHIYSSLISGLCKIADMEKAVGLLDEM-AKEGLEPGIVCYNALIDGFCRSGDISRA 717
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ G P+C Y ++ G
Sbjct: 718 RNVFDSILAKGLVPNCVTYTALIDG 742
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD FTY+ L+ CK +L + QM S G+KPN TYT L++ + +
Sbjct: 552 RGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNS-GLKPNADTYTDLLEGYFKSNDYE 610
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+ ++ ++ SG KPD +Y +++
Sbjct: 611 KVSSILQSMLGSGDKPDNHIYGIVIR 636
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++++Y ++ LC+ N +++M S G+KPN Y LI N+ A
Sbjct: 451 PNVYSYGIMINGLCQNGESKEAGNLLEEM-ISEGLKPNAFMYAPLIIGHSKEGNISLACE 509
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ + PD F YN+++KG
Sbjct: 510 ALEKMTKANVHPDLFCYNSLIKG 532
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y +++ L + ++ + + ++ + G+ P+L Y+ LI +C ++ +A+
Sbjct: 626 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN-GLVPDLHIYSSLISGLCKIADMEKAVG 684
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +P YN ++ G+
Sbjct: 685 LLDEMAKEGLEPGIVCYNALIDGF 708
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ TY L+ CK +T ++ +M GI P+ Y +L +
Sbjct: 724 ILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEM-LDRGIAPDAFVYNVLATGCSDAA 782
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +A+ L + + G+ + ++NT++ G+
Sbjct: 783 DLEQALFLTEEMFNRGYA-NVSLFNTLVHGF 812
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ Y+ L++ LCK L + +M +G++P+ TY L+
Sbjct: 374 MISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEM-IKVGLRPDTFTYNPLMQGHFQQH 432
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L++ + +SG P+ + Y ++ G
Sbjct: 433 DKDGAFELLNEMRNSGILPNVYSYGIMING 462
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ F Y L+ K +++ +++M + + P+L Y LI +
Sbjct: 479 MISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKA-NVHPDLFCYNSLIKGLSTVG 537
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + G PD F Y+ ++ GY
Sbjct: 538 RMEEAEEYYAQVQKRGLVPDEFTYSGLIHGY 568
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + TYN LV CK + V +M GIKP+ +TYTILID N+
Sbjct: 367 RGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEER-GIKPSKITYTILIDTFARMDNME 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L S + + G PD Y+ ++ G+
Sbjct: 426 KAIQLRSPMEELGLTPDVHTYSVLIHGF 453
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I TYN L+ LC+ +DQM++ GI PNL+TY LID C L +A+ L
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSD-GINPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L G P YN ++ G+
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGF 383
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ CK + D+MR G+ N+VTY LI +C EA +
Sbjct: 266 PNLYTYNCVMNQHCKDGRTKDAFKLFDEMRER-GVSCNIVTYNTLIGGLCREMKANEANK 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P+ YNT++ G+
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGF 348
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C L + ++ S G+ P+LVTY IL+ C + A +
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLK-SRGLSPSLVTYNILVSGFCKKGDTSGAGK 394
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V + + G KP Y ++
Sbjct: 395 VVKEMEERGIKPSKITYTILI 415
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P TY L+ + ++ M LG+ P++ TY++LI C +
Sbjct: 402 RGIKPSKITYTILIDTFARMDNMEKAIQLRSPME-ELGLTPDVHTYSVLIHGFCIKGQMN 460
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL + +P+ +YNT++ GY
Sbjct: 461 EASRLFKLMVAKKLEPNKVIYNTMVLGY 488
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++++ ++K C+ + ++ + ++R G PN+V YT LID C + +A L
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELR-EFGFSPNVVIYTTLIDGCCKRGEIEKAKDL 220
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G + + Y ++ G
Sbjct: 221 FFEMGKFGLVANEWTYTVLIHG 242
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+L P+ YN +V CK S +M + PN+ +Y +I+ +C +
Sbjct: 469 MVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEK-ELPPNVASYRYMIEVLCKER 527
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA LV + D+G P + N I +
Sbjct: 528 KSKEAEGLVEKMIDTGIDPSDSILNLISRA 557
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L + +TY L+ L K + ++M+ G+ PNL TY +++ C ++A
Sbjct: 229 LVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQED-GVFPNLYTYNCVMNQHCKDGRTKDA 287
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G + YNT++ G
Sbjct: 288 FKLFDEMRERGVSCNIVTYNTLIGG 312
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y L+ CK + + +M G+ N TYT+LI + ++
Sbjct: 196 PNVVIYTTLIDGCCKRGEIEKAKDLFFEM-GKFGLVANEWTYTVLIHGLFKNGIKKQGFE 254
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P+ + YN +M +
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQH 278
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV KC+ + N +++MR G+K +LVT+ I++ +C L EA+
Sbjct: 348 PDVVTYNTLVDACFKCQRSSDALNLLEEMREK-GVKSSLVTHNIIVKGLCREGQLEEALG 406
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +++ G PD YNT++
Sbjct: 407 RLEMMTEEGLTPDVITYNTLI 427
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ CK ++ + +D+M S G+K + T L+ N+C K EA
Sbjct: 416 LTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRS-GLKMDTFTLNTLLYNLCKEKRYEEA 474
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ A GF PD Y T+M Y
Sbjct: 475 EELLRAPPQRGFVPDEVSYGTVMAAY 500
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L P I TYN L+K L LT + ++++ +G+ P+ TY I+I C
Sbjct: 516 MIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNEL-MEMGLVPDDTTYNIIIHAYCKEG 574
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L +A + + + ++ FKPD NT+M G
Sbjct: 575 DLEKAFQFHNKMVENSFKPDVVTCNTLMNG 604
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L LC+ + + D+M + P++VTY L+D + +A+
Sbjct: 312 PDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALN 371
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G K +N I+KG
Sbjct: 372 LLEEMREKGVKSSLVTHNIIVKG 394
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + + T+N +VK LC+ L ++ M G+ P+++TY LID C N+
Sbjct: 379 KGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEE-GLTPDVITYNTLIDASCKAGNVA 437
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ + SG K D F NT++
Sbjct: 438 KAFVLMDEMVRSGLKMDTFTLNTLL 462
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ CK L + F ++M + KP++VT L++ +C L +A
Sbjct: 556 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVEN-SFKPDVVTCNTLMNGLCLYGRLEKA 614
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M+L + + G K D YNT+++
Sbjct: 615 MKLFESWVEKGKKVDVITYNTLIQA 639
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI +L P+ +T+N LV C +L + + +M+ G+ P+ VTY L++ C
Sbjct: 200 LIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQG-FGLSPDAVTYNTLLNAHCRKG 258
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA L++ + G P YNT++ Y
Sbjct: 259 MLGEARTLLARMKKEGIVPTRATYNTLVSAY 289
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ C+ L + +M+ GI P TY L+ +++A
Sbjct: 240 LSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKE-GIVPTRATYNTLVSAYARLGWIKQA 298
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+V A++ GF+PD + YN + G
Sbjct: 299 TDVVEAMTAFGFEPDLWTYNVLAAG 323
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L++ LCK + T F M G++P++ TY +L+ + EA ++
Sbjct: 629 DVITYNTLIQALCKDNDVDTALRFFADMEVR-GLQPDVFTYNVLLSALSEAGRSVEAQKM 687
Query: 69 VSALSDSGFKPDCFVYNTI 87
+ L++SG F Y +I
Sbjct: 688 LHKLNESGKLYGRFFYPSI 706
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD+ T N L+ LC L + G K +++TY LI +C
Sbjct: 586 MVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESW-VEKGKKVDVITYNTLIQALCKDN 644
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ A+R + + G +PD F YN ++
Sbjct: 645 DVDTALRFFADMEVRGLQPDVFTYNVLL 672
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN LV + + + V+ M A G +P+L TY +L +C + EA +
Sbjct: 277 PTRATYNTLVSAYARLGWIKQATDVVEAMTA-FGFEPDLWTYNVLAAGLCQAGKVDEAFK 335
Query: 68 LVSALSDSGF-KPDCFVYNTIM 88
L + G PD YNT++
Sbjct: 336 LKDEMEQLGIVSPDVVTYNTLV 357
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN LV CK + L + M+ +PNLVTY++LID C + + E +
Sbjct: 147 PDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLG 206
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G K D FVY++++ +
Sbjct: 207 LLEEMEREGLKADVFVYSSLISAF 230
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P TYN +V LCK + + V+ M G KP+ VTY L+ +C
Sbjct: 316 MVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMM-VKKGKKPDAVTYNTLLKGLCGAG 374
Query: 61 NLREAMRLVSALSDSGF--KPDCFVYNTIMKG 90
+ EAM L L F KPD F N +++G
Sbjct: 375 KIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQG 406
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD+FT N L++ LCK + M +G++ N+VTY LI+ + L E
Sbjct: 392 HVKPDVFTCNNLIQGLCKEGRVHDAARIHSSM-VEMGLQGNIVTYNFLIEGYLAARKLIE 450
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A++L +SGF P+ Y+ ++ G
Sbjct: 451 ALKLWKYAVESGFSPNSMTYSVMING 476
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y L LCK +D M G +P +TY ++++ +C + +A
Sbjct: 288 PDVVAYTVLADGLCKNGRAGDAIKVLDLM-VQKGEEPGTLTYNVVVNGLCKEDRMDDAFG 346
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V + G KPD YNT++KG
Sbjct: 347 VVEMMVKKGKKPDAVTYNTLLKG 369
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L +I TYNFL++ R L S G PN +TY+++I+ +C + L A
Sbjct: 428 LQGNIVTYNFLIEGYLAARKLIEALKLWKYAVES-GFSPNSMTYSVMINGLCKMQMLSVA 486
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + DSG +P YN +M
Sbjct: 487 RGLFCKMKDSGIRPTVIDYNALM 509
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TY+ L++ L + + M A G++P++V YT+L D +C
Sbjct: 246 MLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTAR-GVRPDVVAYTVLADGLCKNG 304
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++++ + G +P YN ++ G
Sbjct: 305 RAGDAIKVLDLMVQKGEEPGTLTYNVVVNG 334
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D+F Y+ L+ C + T D+M + PN+VTY+ L+ + T REA
Sbjct: 216 LKADVFVYSSLISAFCGEGDIETGRELFDEMLRR-KVSPNVVTYSCLMQGLGRTGRWREA 274
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G +PD Y + G
Sbjct: 275 SEMLKDMTARGVRPDVVAYTVLADG 299
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ ++ LCK + L+ +M+ S GI+P ++ Y L+ ++C +L +A
Sbjct: 465 PNSMTYSVMINGLCKMQMLSVARGLFCKMKDS-GIRPTVIDYNALMTSLCREDSLEQARS 523
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + D +N I+ G
Sbjct: 524 LFQEMRNVNHNVDVVSFNIIIDG 546
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS-LGIKPNLVTYTILIDNVCNT 59
++ K PD TYN L+K LC + + + + +KP++ T LI +C
Sbjct: 351 MVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKE 410
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A R+ S++ + G + + YN +++GY
Sbjct: 411 GRVHDAARIHSSMVEMGLQGNIVTYNFLIEGY 442
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ ++N ++ K + + + +M + + P+ VT++ILI+ L EAM L
Sbjct: 536 DVVSFNIIIDGTLKAGDVKSAKELLSEM-FMMDLVPDAVTFSILINRFSKLGMLDEAMGL 594
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ G P V+++++KGY
Sbjct: 595 YEKMVSCGHVPGVVVFDSLLKGY 617
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ C CK + + + +M+ + G+KPN+VTY+ LID C ++ A++
Sbjct: 298 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGMMQGAIK 356
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +G P+ F Y +++
Sbjct: 357 LLXDMRRTGLLPNEFTYTSLI 377
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ FTY L+ CK +LT + ++ M + G+K N+VTYT L+D +C + EA
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA-GVKLNIVTYTALLDGLCKAGRMIEA 424
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G P+ VY ++ GY
Sbjct: 425 EEVFRSMLKDGISPNQQVYTALVHGY 450
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P +FTYN ++ LCK L QMR +G+ P++VTY LID
Sbjct: 221 MIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR-EMGLSPDVVTYNSLIDGYGKVG 279
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L E L + + D G PD YN ++ Y
Sbjct: 280 SLEEVASLFNEMKDVGCVPDIITYNGLINCY 310
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + NFL+ L K + V F + M + GI P++ TY ++ID +C +L + R
Sbjct: 193 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGA-GIAPSVFTYNVMIDYLCKEGDLENSRR 251
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD YN+++ GY
Sbjct: 252 LFVQMREMGLSPDVVTYNSLIDGY 275
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY+ L+ CK + + MR + G+ PN TYT LID C NL EA
Sbjct: 331 LKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRT-GLLPNEFTYTSLIDANCKAGNLTEA 389
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L++ + +G K + Y ++ G
Sbjct: 390 WKLLNDMLQAGVKLNIVTYTALLDG 414
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ K SL V + ++M+ +G P+++TY LI+ C + + A
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK-DVGCVPDIITYNGLINCYCKFEKMPRA 319
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
S + ++G KP+ Y+T++ +
Sbjct: 320 FEYFSEMKNNGLKPNVVTYSTLIDAF 345
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y L+ LC + + D+M+ G+ P++ +T LID NL+EA
Sbjct: 576 LQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCR-GMTPDITAFTALIDGNLKHGNLQEA 634
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+S +++ + D VY +++ G+
Sbjct: 635 LVLISRMTELAIEFDLHVYTSLVSGF 660
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I TY L+ LC+ + ++ +M SLG++PN+ YT LID +C + A +L
Sbjct: 545 IVTYCVLIDGLCEAGIVELAVDYFCRM-LSLGLQPNVAVYTSLIDGLCXNNCIESAKKLF 603
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G PD + ++ G
Sbjct: 604 DEMQCRGMTPDITAFTALIDG 624
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 22 KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81
K + NF +M+ +G++ +VTY +LID +C + A+ + G +P+
Sbjct: 522 KAGKSSDALNFFQEMQ-DVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNV 580
Query: 82 FVYNTIMKG 90
VY +++ G
Sbjct: 581 AVYTSLIDG 589
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ C L ++ +++M I P++ TYTILID +C L+EA
Sbjct: 305 PDVITYSTLICGFCLAGQLMGAFSLLNEMTLK-NINPDVYTYTILIDALCKEGKLKEAKN 363
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G KP+ Y+T+M GY
Sbjct: 364 LLGVMTKEGVKPNVVTYSTLMDGY 387
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + PD++TY L+ LCK L N + M G+KPN+VTY+ L+D C
Sbjct: 333 MTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKE-GVKPNVVTYSTLMDGYCLVG 391
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ A+ + P YN ++ G
Sbjct: 392 EVHNAKQIFHAMVQTEVNPSVCSYNIMING 421
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TYN L+ LCK +T+ + + ++ G +++TYT L+D +C +
Sbjct: 438 MLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHR-GQPADVITYTSLLDGLCKNQ 496
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL +A+ L + + G +P+ + Y ++ G
Sbjct: 497 NLDKAIALFMKMKERGIQPNKYTYTALIDG 526
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P + +YN ++ LCK +S+ N + +M + PN VTY LID +C +
Sbjct: 403 MVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHK-NVVPNTVTYNSLIDGLCKSG 461
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L+ L G D Y +++ G
Sbjct: 462 RITSALDLMKELHHRGQPADVITYTSLLDG 491
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + P D+ TY L+ LCK ++L +M+ GI+PN TYT LID +C
Sbjct: 473 LHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKER-GIQPNKYTYTALIDGLCKGA 531
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L+ A +L + G D + YN ++ G
Sbjct: 532 RLKNAQKLFQHILVKGCCIDVYTYNVMIGG 561
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I + ++ L K + T + QM GI+P+LVT +ILI+ C+ + +
Sbjct: 130 PSIIEFGKILGSLVKMKHFPTAISLSKQMEVK-GIEPDLVTLSILINCFCHLGQMAFSFS 188
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G++P+ + T+MKG
Sbjct: 189 VLGKILKLGYQPNTIILTTLMKG 211
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ L+K LC + +F D++ A G + N V+Y L++ +C R A++
Sbjct: 200 PNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQ-GFQMNQVSYGTLLNGLCKIGETRCAIK 258
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D +PD +YNTI+ G
Sbjct: 259 LLRMIEDRSTRPDVVMYNTIIDG 281
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ T + L+ C C + ++ + ++ LG +PN + T L+ +C ++
Sbjct: 161 KGIEPDLVTLSILINCFCHLGQMAFSFSVLGKI-LKLGYQPNTIILTTLMKGLCLKGEVK 219
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + GF+ + Y T++ G
Sbjct: 220 KSLHFHDKVVAQGFQMNQVSYGTLLNG 246
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ +TY L+ LCK L + G ++ TY ++I +C L
Sbjct: 511 RGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVK-GCCIDVYTYNVMIGGLCKEGMLD 569
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+ + S + D+G PD + I++
Sbjct: 570 EALAMKSKMEDNGCIPDAVTFEIIIR 595
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ LCK + +M +P++V Y +ID +C K + EA +
Sbjct: 239 SYGTLLNGLCKIGETRCAIKLL-RMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTE 297
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
++ G PD Y+T++ G+
Sbjct: 298 MNSRGIFPDVITYSTLICGF 317
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 36 MRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
M A+ GI PNLVT +ILI+ + + + + ++ + G++P+ T+MKG
Sbjct: 1 MEAAKGIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKG 55
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I N ++K LCK + + + V +M S GI P+L TY+++ID +C +K + +A R
Sbjct: 243 PKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAER 301
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G +P+ YN+++ GY
Sbjct: 302 VLEQMVEAGTRPNSITYNSLIHGY 325
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + ++ ++ LCK + + +D M G +PN+VT+ L++ C N+ EA
Sbjct: 526 PPGVKYFSSIINNLCKEGRVAEGKDIMDMM-VQTGQRPNVVTFNSLMEGYCLVGNMEEAF 584
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ A++ G +P+C++Y T++ GY
Sbjct: 585 ALLDAMASIGIEPNCYIYGTLVDGY 609
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ C ++ + +D M AS+GI+PN Y L+D C + +A+
Sbjct: 562 PNVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALT 620
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP +Y+ I+ G
Sbjct: 621 VFRDMLHKGVKPTSVLYSIILHG 643
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTY+ ++ LCK +++ ++QM G +PN +TY LI + E+
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQM-VEAGTRPNSITYNSLIHGYSISGMWNES 334
Query: 66 MRLVSALSDSGFKP 79
+R+ +S G P
Sbjct: 335 VRVFKQMSSCGVIP 348
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 33/120 (27%)
Query: 4 KQLPPDIFTYNFLVKCLCKCR----------------------SLTTVYNFVDQMRA--- 38
+ PP I TYN L+ C + S + +Y FV
Sbjct: 170 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEVDKA 229
Query: 39 --------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G+ P ++ +I +C K + +A +V + DSG PD F Y+ I+ G
Sbjct: 230 HCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDG 289
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ +N L+ +C + + M+ G+ P+ VT+ +I ++C
Sbjct: 414 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRIG 472
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+ + + D G P VY +++G
Sbjct: 473 RLDDALHKFNHMVDIGVPPSEAVYGCLIQG 502
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T+N ++ + K D + ++ G+ PN+ TY+++I N+ ++ EA L
Sbjct: 703 DIITFNIVISAMFKVGRRQEAKELFDAI-STYGLVPNIQTYSMMITNLIKEESYEEADNL 761
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
++ SG D + N I++
Sbjct: 762 FISVEKSGHASDSRLLNHIVR 782
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD T+ ++ LC+ L + + M +G+ P+ Y LI CN L
Sbjct: 452 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHM-VDIGVPPSEAVYGCLIQGCCNHGELV 510
Query: 64 EAMRLVSALSDSGFKP 79
+A L+S + + P
Sbjct: 511 KAKELISEMMNKDIPP 526
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L PDI TYN L+ +C+ L + D M S I PN VTY+ILID+ C
Sbjct: 366 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH-SREIFPNHVTYSILIDSHCEKG 424
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + + G P+ YN+I+KGY
Sbjct: 425 QVEDAFGFLDEMINKGILPNIMTYNSIIKGY 455
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK R L +++MR G+ P+L T+T LI C L +A++
Sbjct: 303 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRER-GVPPDLCTFTTLIHGYCIEGKLDKALQ 361
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + +PD YNT++ G
Sbjct: 362 LFDTMLNQRLRPDIVTYNTLIDG 384
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+ TY+ L+ C+ + + F+D+M + GI PN++TY +I C + N+
Sbjct: 404 REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEM-INKGILPNIMTYNSIIKGYCRSGNVS 462
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + + PD YNT++ GY
Sbjct: 463 KGQKFLQKMMVNKVSPDLITYNTLIHGY 490
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+I TYN ++K C+ +++ F+ +M + + P+L+TY LI
Sbjct: 436 MINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN-KVSPDLITYNTLIHGYIKED 494
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A +L++ + +PD YN ++ G+
Sbjct: 495 KMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 525
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P I TYN ++K LC+ + +M G+ P++ ++TILI C
Sbjct: 156 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMD-DFGVAPDVRSFTILIGGFCRVG 214
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+++ + G KPD ++ ++
Sbjct: 215 EIEEALKIYKEMRHRGIKPDLVSFSCLI 242
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y ++ C+ ++ D+M G P++VTY L++ +C + L +A
Sbjct: 266 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEM-VGCGCLPDVVTYNTLLNGLCKERRLLDA 324
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + G PD + T++ GY
Sbjct: 325 EGLLNEMRERGVPPDLCTFTTLIHGY 350
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ TYN L+ K + + ++ M ++P++VTY +LI+
Sbjct: 471 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE-KVQPDVVTYNMLINGFSVHG 529
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++EA + + G +PD + Y +++ G+
Sbjct: 530 NVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 560
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+ +T N +V CK V + +M + P++VT+ +++D + AM L
Sbjct: 94 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRC-VFPDVVTHNVMVDARFRAGDAEAAMAL 152
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V ++ G KP YN+++KG
Sbjct: 153 VDSMVSKGLKPGIVTYNSVLKG 174
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ +++ L+ + + ++ +MR G+ P+ V YT++I C +
Sbjct: 229 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC-FGLVPDGVIYTMVIGGFCRAGLMS 287
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + G PD YNT++ G
Sbjct: 288 DALRVRDEMVGCGCLPDVVTYNTLLNG 314
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N +V + VD M S G+KP +VTY ++ +C + +A
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSM-VSKGLKPGIVTYNSVLKGLCRSGMWDKAWE 186
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G PD + ++ G+
Sbjct: 187 VFKEMDDFGVAPDVRSFTILIGGF 210
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ ++ L+ C+ + +MR GIKP+LV+++ LI
Sbjct: 187 VFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR-GIKPDLVSFSCLIGLF 245
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ AM + + G PD +Y ++ G+
Sbjct: 246 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGF 280
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L PDI TYN L+ +C+ L + D M S I PN VTY+ILID+ C
Sbjct: 427 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH-SREIFPNHVTYSILIDSHCEKG 485
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + + G P+ YN+I+KGY
Sbjct: 486 QVEDAFGFLDEMINKGILPNIMTYNSIIKGY 516
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK R L +++MR G+ P+L T+T LI C L +A++
Sbjct: 364 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRER-GVPPDLCTFTTLIHGYCIEGKLDKALQ 422
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + +PD YNT++ G
Sbjct: 423 LFDTMLNQRLRPDIVTYNTLIDG 445
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+ TY+ L+ C+ + + F+D+M + GI PN++TY +I C + N+
Sbjct: 465 REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEM-INKGILPNIMTYNSIIKGYCRSGNVS 523
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + + PD YNT++ GY
Sbjct: 524 KGQKFLQKMMVNKVSPDLITYNTLIHGY 551
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+I TYN ++K C+ +++ F+ +M + + P+L+TY LI
Sbjct: 497 MINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN-KVSPDLITYNTLIHGYIKED 555
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A +L++ + +PD YN ++ G+
Sbjct: 556 KMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 586
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P I TYN ++K LC+ + +M G+ P++ ++TILI C
Sbjct: 217 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMD-DFGVAPDVRSFTILIGGFCRVG 275
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+++ + G KPD ++ ++
Sbjct: 276 EIEEALKIYKEMRHRGIKPDLVSFSCLI 303
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y ++ C+ ++ D+M G P++VTY L++ +C + L +A
Sbjct: 327 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEM-VGCGCLPDVVTYNTLLNGLCKERRLLDA 385
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + G PD + T++ GY
Sbjct: 386 EGLLNEMRERGVPPDLCTFTTLIHGY 411
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ TYN L+ K + + ++ M ++P++VTY +LI+
Sbjct: 532 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE-KVQPDVVTYNMLINGFSVHG 590
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++EA + + G +PD + Y +++ G+
Sbjct: 591 NVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 621
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+ +T N +V CK V + +M + P++VT+ +++D + AM L
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRC-VFPDVVTHNVMVDARFRAGDAEAAMAL 213
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V ++ G KP YN+++KG
Sbjct: 214 VDSMVSKGLKPGIVTYNSVLKG 235
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ +++ L+ + + ++ +MR G+ P+ V YT++I C +
Sbjct: 290 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC-FGLVPDGVIYTMVIGGFCRAGLMS 348
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + G PD YNT++ G
Sbjct: 349 DALRVRDEMVGCGCLPDVVTYNTLLNG 375
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N +V + VD M S G+KP +VTY ++ +C + +A
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSM-VSKGLKPGIVTYNSVLKGLCRSGMWDKAWE 247
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G PD + ++ G+
Sbjct: 248 VFKEMDDFGVAPDVRSFTILIGGF 271
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ ++ L+ C+ + +MR GIKP+LV+++ LI
Sbjct: 248 VFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR-GIKPDLVSFSCLIGLF 306
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ AM + + G PD +Y ++ G+
Sbjct: 307 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGF 341
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TYN L+ ++ ++M A GI+P+ TY +I+ N +
Sbjct: 570 EKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK-GIEPDRYTYMSMINGHVTAGNSK 628
Query: 64 EAMRLVSALSDSGFKPD 80
EA +L + GF PD
Sbjct: 629 EAFQLHDEMLQRGFAPD 645
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY ++ LCKC L + M+ + G PN+VTYT LI +C + + EA R
Sbjct: 458 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA-GCAPNVVTYTTLISGLCKARKVDEAER 516
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + ++G P+ YNT++ G
Sbjct: 517 VMEEMRNAGCPPNLVTYNTMVNG 539
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK + ++QM+ S + P++VTY+ +I+ +C + L EA +
Sbjct: 387 PDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQK 446
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G PD Y TI+ G
Sbjct: 447 LLDRMCKAGCNPDVVTYTTIIDG 469
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ ++ LCK L +D+M G P++VTYT +ID +C L EA
Sbjct: 423 PDVVTYSTVINGLCKSDMLVEAQKLLDRM-CKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 481
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G P+ Y T++ G
Sbjct: 482 LLQGMKRAGCAPNVVTYTTLISG 504
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N LV CK ++ + M A G++PN+VTY+ LID +C ++ EA
Sbjct: 247 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK-GMRPNVVTYSALIDGLCKSQKFLEAKE 305
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G PD F Y+ ++ G
Sbjct: 306 VLEEMKTRGVTPDAFTYSALIHG 328
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TY+ L+ LCK + +++M+ + G+ P+ TY+ LI +C
Sbjct: 275 MVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMK-TRGVTPDAFTYSALIHGLCKAD 333
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +++ ++ SG PD VY++I+ +
Sbjct: 334 KIEEAEQMLRRMAGSGCTPDVVVYSSIIHAF 364
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ + + L +++MR G PNLVTY +L+D +C + A
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMRER-GCPPNLVTYNVLVDALCKLSMVGAAQD 235
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + + GF P+ +N+++ G+
Sbjct: 236 VVKKMIEGGFAPNVMTFNSLVDGF 259
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TYN LV LCK + + V +M G PN++T+ L+D C N+ +A
Sbjct: 211 PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG-GFAPNVMTFNSLVDGFCKRGNVDDAR 269
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + G +P+ Y+ ++ G
Sbjct: 270 KLLGIMVAKGMRPNVVTYSALIDG 293
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK R + +++MR + G PNLVTY +++ +C + ++EA +
Sbjct: 493 PNVVTYTTLISGLCKARKVDEAERVMEEMRNA-GCPPNLVTYNTMVNGLCVSGRIKEAQQ 551
Query: 68 LVSALSD--SGFKPDCFVYNTIM 88
LV + D + PD Y TI+
Sbjct: 552 LVQRMKDGRAECSPDAATYRTIV 574
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD FTY+ L+ LCK + + +M S G P++V Y+ +I C + L
Sbjct: 313 RGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS-GCTPDVVVYSSIIHAFCKSGKLL 371
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + + PD YNT++ G
Sbjct: 372 EAQKTLQEMRKQRKSPDVVTYNTVIDG 398
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+ ++ + L +D +R S+G PN+VTYT LI K L EAM+
Sbjct: 145 PDAFTHTPIITAMANAGDLDGA---MDHLR-SMGCDPNVVTYTALIAAFARAKKLEEAMK 200
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + + G P+ YN ++
Sbjct: 201 LLEEMRERGCPPNLVTYNVLV 221
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 11 FTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
F++N L++ L +C+ + F ++ AS +P++ +Y I+I CN +L A+ L+
Sbjct: 78 FSWNSLLQVLVRCKKHREAGDLFRSELLAS--CEPDVCSYNIVISGFCNAGDLHAALELL 135
Query: 70 SALSDSGFKPDCFVYNTIM 88
+ +GF PD F + I+
Sbjct: 136 EEMKSAGFAPDAFTHTPII 154
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I N ++K LCK + + + V +M S GI P+L TY+++ID +C +K + +A R
Sbjct: 243 PKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAER 301
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G +P+ YN+++ GY
Sbjct: 302 VLEQMVEAGTRPNSITYNSLIHGY 325
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + ++ ++ LCK + + +D M G +PN+VT+ L++ C N+ EA
Sbjct: 525 PPGVKYFSSIINNLCKEGRVAEGKDIMDMM-VQTGQRPNVVTFNSLMEGYCLVGNMEEAF 583
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ A++ G +P+C++Y T++ GY
Sbjct: 584 ALLDAMASIGIEPNCYIYGTLVDGY 608
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ C ++ + +D M AS+GI+PN Y L+D C + +A+
Sbjct: 561 PNVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALT 619
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP +Y+ I+ G
Sbjct: 620 VFRDMLHKGVKPTSVLYSIILHG 642
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTY+ ++ LCK +++ ++QM G +PN +TY LI + E+
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQM-VEAGTRPNSITYNSLIHGYSISGMWNES 334
Query: 66 MRLVSALSDSGFKP 79
+R+ +S G P
Sbjct: 335 VRVFKQMSSCGVIP 348
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 33/120 (27%)
Query: 4 KQLPPDIFTYNFLVKCLCKCR----------------------SLTTVYNFVDQMRA--- 38
+ PP I TYN L+ C + S + +Y FV
Sbjct: 170 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEVDKA 229
Query: 39 --------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G+ P ++ +I +C K + +A +V + DSG PD F Y+ I+ G
Sbjct: 230 HCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDG 289
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ +N L+ +C + + M+ G+ P+ VT+ +I ++C
Sbjct: 413 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRIG 471
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+ + + D G P VY +++G
Sbjct: 472 RLDDALHKFNHMVDIGVPPSEAVYGCLIQG 501
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T+N ++ + K D + ++ G+ PN+ TY+++I N+ ++ EA L
Sbjct: 702 DIITFNIVISAMFKVGRRQEAKELFDAI-STYGLVPNIQTYSMMITNLIKEESYEEADNL 760
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
++ SG D + N I++
Sbjct: 761 FISVEKSGHASDSRLLNHIVR 781
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD T+ ++ LC+ L + + M +G+ P+ Y LI CN L
Sbjct: 451 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHM-VDIGVPPSEAVYGCLIQGCCNHGELV 509
Query: 64 EAMRLVSALSDSGFKP 79
+A L+S + + P
Sbjct: 510 KAKELISEMMNKDIPP 525
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TY+ LV LCK ++ V++ +D+MR G +++TY LID +C +L
Sbjct: 616 KNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR-GQPADVITYNSLIDGLCKNGHLD 674
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L + + D G +P+ F + ++ G
Sbjct: 675 KAIALFNKMKDQGIRPNTFTFTILLDG 701
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TYN L+ LCK L ++M+ GI+PN T+TIL+D +C L++A
Sbjct: 654 PADVITYNSLIDGLCKNGHLDKAIALFNKMKDQ-GIRPNTFTFTILLDGLCKGGRLKDAQ 712
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ L G+ D ++YN ++ G+
Sbjct: 713 EVFQDLLTKGYHLDVYIYNVMIYGH 737
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + D+ TY+ L+ C L +++M I P++ TYTIL+D +
Sbjct: 473 MTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKT-INPDVRTYTILVDALGKEG 531
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + + KPD F YNT+M GY
Sbjct: 532 KVKEAKSVLAVMLKACVKPDVFTYNTLMNGY 562
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD T N L+K LC + +F D++ A G + N V+Y LI+ VC + R A+
Sbjct: 60 PPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQ-GFQLNQVSYATLINGVCRIGDTRAAI 118
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+ + + KP+ +YNTI+
Sbjct: 119 KFLRKIDGRLAKPNVEMYNTII 140
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN L+ + + + M + +G+ P++ TYTILI+ C +K + EA+
Sbjct: 550 PDVFTYNTLMNGYLLVYEVKKAQHVFNAM-SLMGVTPDVHTYTILINGFCKSKMVDEALN 608
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + PD Y++++ G
Sbjct: 609 LFKEMHQKNMVPDTVTYSSLVDG 631
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TYN LV LCK + + + M + +K N++TY+ L+D
Sbjct: 194 MVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKSNVITYSTLMDGYFLVY 252
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A + +A+S G PD YN ++ G+
Sbjct: 253 EVKKAQHVFNAMSLMGVTPDVHSYNIMINGF 283
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP T N L+K LC + +F D++ A G + N V+Y LI+ VC + R A+
Sbjct: 374 PPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ-GFQLNQVSYATLINGVCKIGDTRGAI 432
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L+ + KP+ +Y+TI+
Sbjct: 433 KLLRKIDGRLTKPNVEMYSTII 454
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ LCK + ++ Y +M GI N+VTY+ LI C L+EA+
Sbjct: 131 PNVEMYNTIIDALCKYQLVSEAYGLFSEMTVK-GISANVVTYSTLIYGFCIVGKLKEALG 189
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + P+ YN ++
Sbjct: 190 LLNVMVLKTINPNVCTYNILV 210
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + ++ TY+ L+ C L ++ M I PN+ TY IL+D +C
Sbjct: 159 MTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKT-INPNVCTYNILVDALCKEG 217
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + + K + Y+T+M GY
Sbjct: 218 KVKEAKSVLAVMLKACVKSNVITYSTLMDGY 248
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY LV L K + + + M + +KP++ TY L++
Sbjct: 508 MVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKAC-VKPDVFTYNTLMNGYLLVY 566
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A + +A+S G PD Y ++ G+
Sbjct: 567 EVKKAQHVFNAMSLMGVTPDVHTYTILINGF 597
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN ++ CK + + N +M L P ++ + ++D+ K+ A+
Sbjct: 271 PDVHSYNIMINGFCKIKRVDKALNLFKEM--ILSRFPPIIQFNKILDSFAKMKHYSTAVS 328
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L L G +PD F N ++
Sbjct: 329 LSHRLELKGIQPDLFTLNILI 349
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PP I +N ++ K + +T + ++ GI+P+L T ILI+ C+
Sbjct: 299 MILSRFPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELK-GIQPDLFTLNILINCFCHMG 356
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +++ + G+ P NT++KG
Sbjct: 357 QITFGFSVLAKILKRGYPPSTVTLNTLIKG 386
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ +CK + ++ L KPN+ Y+ +ID +C + + EA L S
Sbjct: 414 SYATLINGVCKIGDTRGAIKLLRKIDGRL-TKPNVEMYSTIIDALCKYQLVSEAYGLFSE 472
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
++ G D Y+T++ G+
Sbjct: 473 MTVKGISADVVTYSTLIYGF 492
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ +C+ F+ ++ L KPN+ Y +ID +C + + EA L S
Sbjct: 100 SYATLINGVCRIGDTRAAIKFLRKIDGRLA-KPNVEMYNTIIDALCKYQLVSEAYGLFSE 158
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
++ G + Y+T++ G+
Sbjct: 159 MTVKGISANVVTYSTLIYGF 178
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I N ++K LCK + + + V +M S GI P+L TY+++ID +C +K + +A R
Sbjct: 167 PKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAER 225
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G +P+ YN+++ GY
Sbjct: 226 VLEQMVEAGTRPNSITYNSLIHGY 249
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + ++ ++ LCK + + +D M G +PN+VT+ L++ C N+ EA
Sbjct: 449 PPGVKYFSSIINNLCKEGRVAEGKDIMDMM-VQTGQRPNVVTFNSLMEGYCLVGNMEEAF 507
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ A++ G +P+C++Y T++ GY
Sbjct: 508 ALLDAMASIGIEPNCYIYGTLVDGY 532
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ C ++ + +D M AS+GI+PN Y L+D C + +A+
Sbjct: 485 PNVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALT 543
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP +Y+ I+ G
Sbjct: 544 VFRDMLHKGVKPTSVLYSIILHG 566
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTY+ ++ LCK +++ ++QM G +PN +TY LI + E+
Sbjct: 200 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQM-VEAGTRPNSITYNSLIHGYSISGMWNES 258
Query: 66 MRLVSALSDSGFKP 79
+R+ +S G P
Sbjct: 259 VRVFKQMSSCGVIP 272
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 33/120 (27%)
Query: 4 KQLPPDIFTYNFLVKCLCKCR----------------------SLTTVYNFVDQMRA--- 38
+ PP I TYN L+ C + S + +Y FV
Sbjct: 94 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEVDKA 153
Query: 39 --------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G+ P ++ +I +C K + +A +V + DSG PD F Y+ I+ G
Sbjct: 154 HCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDG 213
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ +N L+ +C + + M+ G+ P+ VT+ +I ++C
Sbjct: 337 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRIG 395
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+ + + D G P VY +++G
Sbjct: 396 RLDDALHKFNHMVDIGVPPSEAVYGCLIQG 425
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T+N ++ + K D + ++ G+ PN+ TY+++I N+ ++ EA L
Sbjct: 626 DIITFNIVISAMFKVGRRQEAKELFDAI-STYGLVPNIQTYSMMITNLIKEESYEEADNL 684
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
++ SG D + N I++
Sbjct: 685 FISVEKSGHASDSRLLNHIVR 705
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD T+ ++ LC+ L + + M +G+ P+ Y LI CN L
Sbjct: 375 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHM-VDIGVPPSEAVYGCLIQGCCNHGELV 433
Query: 64 EAMRLVSALSDSGFKP 79
+A L+S + + P
Sbjct: 434 KAKELISEMMNKDIPP 449
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++T+N ++ LCK L F+ M +LG+KPN+VTY +I C + A +
Sbjct: 216 LYTFNIMINVLCKEGKLKKAKEFIGHME-TLGVKPNVVTYNTIIHGHCLRGKFQRARVIF 274
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ D G +PDC+ YN+ + G
Sbjct: 275 QTMKDKGLEPDCYTYNSFISG 295
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L++ C+ + +D+M+ GIKP+ ++Y LI ++++A R
Sbjct: 494 PDEITYNTLMQGYCREGKVEEARQLLDEMKRR-GIKPDHISYNTLISGYSKRGDMKDAFR 552
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + +GF P YN +++G
Sbjct: 553 VRDEMMTTGFDPTILTYNALIQG 575
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI +N L+ C ++ + + +M ++ + P+ +TY L+ C +
Sbjct: 455 EGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM-DNMKVLPDEITYNTLMQGYCREGKVE 513
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L+ + G KPD YNT++ GY
Sbjct: 514 EARQLLDEMKRRGIKPDHISYNTLISGY 541
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 36/123 (29%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT------------- 50
K + PD T+N L+ C+C + +D+M GI+P LVTYT
Sbjct: 385 KGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGK-GIQPTLVTYTSLIYVLGKRNRMK 443
Query: 51 ----------------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
LID C N+ A +L+ + + PD YNT+M
Sbjct: 444 EADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLM 503
Query: 89 KGY 91
+GY
Sbjct: 504 QGY 506
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ C L Y + D+M S GI +LVTY + I + + +A
Sbjct: 317 LVPNAVTYNALIDGYCNKGDLDKAYAYRDEM-ISKGIMASLVTYNLFIHALFMEGRMGDA 375
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + G PD +N ++ GY
Sbjct: 376 DNMIKEMREKGMMPDAVTHNILINGY 401
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD +TYN + LCK L + +M G+ PN VTY LID CN +L
Sbjct: 280 KGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEG-GLVPNAVTYNALIDGYCNKGDLD 338
Query: 64 EAMRLVSALSDSGFKPDCFVYN 85
+A + G YN
Sbjct: 339 KAYAYRDEMISKGIMASLVTYN 360
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD +YN L+ K + + D+M + G P ++TY LI +C +
Sbjct: 525 RGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTT-GFDPTILTYNALIQGLCKNQEGE 583
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + G PD Y +I++
Sbjct: 584 HAEELLKEMVSKGITPDDSTYLSIIEA 610
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + + TYN + L + N + +MR G+ P+ VT+ ILI+ C
Sbjct: 347 MISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREK-GMMPDAVTHNILINGYCRCG 405
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ + A L+ + G +P Y +++
Sbjct: 406 DAKRAFGLLDEMVGKGIQPTLVTYTSLI 433
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+I T N ++ K + +M + I+ +L T+ I+I+ +C L+
Sbjct: 175 KGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEM-FRMNIRSSLYTFNIMINVLCKEGKLK 233
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + + G KP+ YNTI+ G+
Sbjct: 234 KAKEFIGHMETLGVKPNVVTYNTIIHGH 261
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L PD+ T+N L++ LC ++ ++M+ G KP+ TY+ILID++C +
Sbjct: 359 LVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNK-GCKPDEFTYSILIDSLCYER 417
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L+EA+ L+ + SG + VYNT++ G
Sbjct: 418 RLKEALMLLKEMESSGCARNAVVYNTLIDG 447
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ LCK R + DQM LG+ + VTY LID +C K + EA +L+ +
Sbjct: 441 YNTLIDGLCKSRRIEDAEEIFDQMEL-LGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQM 499
Query: 73 SDSGFKPDCFVYNTIM 88
G KPD F YN+++
Sbjct: 500 IMEGLKPDKFTYNSLL 515
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD++TYN L+ +CK + QM PN VTY LI +C
Sbjct: 289 MIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILR-ECSPNTVTYNTLISALCKEN 347
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L L G PD +NT+++G
Sbjct: 348 EIEAATDLARILVSKGLLPDVCTFNTLIQG 377
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LCK + + +DQM G+KP+ TY L+ C ++ +A +V
Sbjct: 475 TYNTLIDGLCKNKRVEEASQLMDQMIME-GLKPDKFTYNSLLTYFCRVGDIEKAGDIVQT 533
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +G +PD F Y T++ G
Sbjct: 534 MASNGCEPDIFTYGTLIGG 552
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 36/118 (30%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT------------------ 50
D+ T+N L+K LCK L +++M A+ G+KP+ +T+T
Sbjct: 157 DVSTFNVLIKALCKAHQLRPAILMLEEM-ANHGLKPDEITFTTLMQGFIEEGDLNGALKM 215
Query: 51 -----------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L++ C + EA+R V +S+ GF PD +N+++ G+
Sbjct: 216 KKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGF 273
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ L+ LC R L + +M +S G N V Y LID +C ++ + +A
Sbjct: 401 PDEFTYSILIDSLCYERRLKEALMLLKEMESS-GCARNAVVYNTLIDGLCKSRRIEDAEE 459
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G YNT++ G
Sbjct: 460 IFDQMELLGVSRSSVTYNTLIDG 482
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
LV CK + FV ++ G P+ VT+ L++ C N+ +A+ +V + +
Sbjct: 234 LVNGFCKEGRVEEALRFVLEVSEE-GFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEK 292
Query: 76 GFKPDCFVYNTIMKG 90
GF PD + YN+++ G
Sbjct: 293 GFDPDVYTYNSLISG 307
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN + L + L V +M + GI ++ T+ +LI +C LR A+
Sbjct: 121 PDTNFYNIALNALVEDNKLKLVEMLHSKM-VNEGIVLDVSTFNVLIKALCKAHQLRPAIL 179
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +++ G KPD + T+M+G+
Sbjct: 180 MLEEMANHGLKPDEITFTTLMQGF 203
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD FTYN L+ C+ + + V M AS G +P++ TY LI +C
Sbjct: 499 MIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTM-ASNGCEPDIFTYGTLIGGLCRAG 557
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +L+ ++ G YN +++
Sbjct: 558 RVDVASKLLRSVQMKGIVLTPHAYNPVIQA 587
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N LV C+ ++ + VD M G P++ TY LI +C +A+
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEK-GFDPDVYTYNSLISGMCKLGEFEKAIE 319
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + P+ YNT++
Sbjct: 320 ILQQMILRECSPNTVTYNTLISA 342
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ PD+ ++ +V LCK +T ++ VD M G++PN+VTY L+D C
Sbjct: 268 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR-GVEPNVVTYNALMDGHCLQS 326
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + +G+ P+ YNT++ GY
Sbjct: 327 EMDEAVKVFDTMVHNGYAPNVISYNTLINGY 357
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L P+ TYN L+ LC L +M A G P+L TY IL+D +C +L
Sbjct: 376 KELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAH-GQIPDLATYRILLDYLCKKSHLD 434
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ + S PD +Y ++ G
Sbjct: 435 EAMALLKTIEGSNMDPDIQIYTIVIDG 461
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI Y ++ +C+ L + + +S G++PN+ TYTI+I+ +C L EA
Sbjct: 448 MDPDIQIYTIVIDGMCRAGELEAARDIFSNL-SSKGLRPNVRTYTIMINGLCRRGLLDEA 506
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + +G PD YNTI +G
Sbjct: 507 NKLFMEMDGNGCSPDGCTYNTITQG 531
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDIFTY L+ LC V ++QM S I P++V ++ ++D +C
Sbjct: 233 MVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINS-KIMPDVVIFSTVVDALCKEG 291
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +P+ YN +M G+
Sbjct: 292 KITEAHDVVDMMIIRGVEPNVVTYNALMDGH 322
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD T+ L++ LC + + D+M G +PN+VTY LI+ +C N A
Sbjct: 133 LQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGE-GFQPNVVTYGTLINGLCKVGNTNAA 191
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+RL+ ++ +PD VY +I+
Sbjct: 192 IRLLRSMEQGNCQPDVVVYTSII 214
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LCK R +T +N +M GI P++ TYT LI ++CN +
Sbjct: 205 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ-GISPDIFTYTSLIHSLCNLCEWKHVTT 263
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + +S PD +++T++
Sbjct: 264 LLNQMINSKIMPDVVIFSTVVDA 286
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK + + M +P++V YT +ID++C +
Sbjct: 163 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQG-NCQPDVVVYTSIIDSLCKDR 221
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EA L S + G PD F Y +++
Sbjct: 222 QVTEAFNLFSKMVGQGISPDIFTYTSLIH 250
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T N L+ C ++ + ++ LG++P+ T+T LI +C + +A
Sbjct: 98 IPPDVYTLNILINSFCHLNRPGFAFSVLAKI-LKLGLQPDTATFTTLIRGLCVEGKIGDA 156
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+P+ Y T++ G
Sbjct: 157 LHLFDKMIGEGFQPNVVTYGTLING 181
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP +N L+ + K + TV++ +QM S GI P++ T ILI++ C+ A
Sbjct: 64 PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMD-SFGIPPDVYTLNILINSFCHLNRPGFAF 122
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G +PD + T+++G
Sbjct: 123 SVLAKILKLGLQPDTATFTTLIRG 146
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TYN L+ C + D M + G PN+++Y LI+ C +
Sbjct: 303 MIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHN-GYAPNVISYNTLINGYCKIQ 361
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L + P+ YNT+M G
Sbjct: 362 RMDKATYLFEEMCQKELIPNTVTYNTLMHG 391
>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 412
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PD+ TYN L+ LCK ++ VD+M G P+++TY+ L+D +C +
Sbjct: 234 RKLIPDVVTYNSLINGLCKSGKISYALKLVDEMH-DRGQPPDIITYSSLLDALCKNHQVD 292
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ L D G +P+ + Y ++ G
Sbjct: 293 KAIALLKNLKDQGIRPNMYTYTILIDG 319
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPDI TY+ L+ LCK + + ++ GI+PN+ TYTILID +C L +A
Sbjct: 272 PPDIITYSSLLDALCKNHQVDKAIALLKNLKDQ-GIRPNMYTYTILIDGLCKGGRLEDAH 330
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ L G+ Y ++ G+
Sbjct: 331 NIFEDLLVKGYNITVNTYTVMIHGF 355
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+++TY L+ LCK L +N F D + I N TYT++I CN EA+
Sbjct: 308 PNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVN--TYTVMIHGFCNKGLFDEAL 365
Query: 67 RLVSALSDSGFKPDCFVYNTIMK 89
L+S + D+ P+ Y I++
Sbjct: 366 ALLSKMKDNSCFPNALTYEIIIR 388
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ KQ + P+ TY+ L+ C + M G+ N+ +Y I+I+ C
Sbjct: 160 MMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLR-GVTANVWSYNIMINGFCKI 218
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K EAM L + PD YN+++ G
Sbjct: 219 KMTDEAMNLFEEMHCRKLIPDVVTYNSLING 249
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 36 MRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
M GI PN VTY+ L+D C + A + S +S G + + YN ++ G+
Sbjct: 160 MMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGF 215
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ C+ R + + F++QM A G P+++TYT LI C ++++ +
Sbjct: 142 PTVVTYNSIITGFCRARRVDEAHGFMEQMVAE-GCHPDIITYTALIGGFCKSRDVGRGLE 200
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ GF PD Y+T++ G
Sbjct: 201 LLGEVTRRGFTPDIVTYSTVIDG 223
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ CK L Y QM A+ + P++VT+T L+D +C + +A+
Sbjct: 279 PDVVTYTTLMSAFCKMGRLDDAYELFQQMVAN-KLSPDVVTFTSLVDGLCGEGRMEDALE 337
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G P + YN ++ GY
Sbjct: 338 LLEEITRRGCPPTIYTYNCVVDGY 361
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ ++ LCK L + ++M + P +TY LI C ++ EA+R
Sbjct: 212 PDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA----PTAITYNSLIGGYCRAGDMDEAIR 267
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D PD Y T+M +
Sbjct: 268 LLGKMVDDKCAPDVVTYTTLMSAF 291
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T +V+ LC + V++M G+ N +TY+ L+D +C + L EA+
Sbjct: 72 PDNTTLTVVVQSLCLGDRVDDARELVEEM-LHRGMAANAITYSALVDGLCKCERLDEAVA 130
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV +++ G P YN+I+ G+
Sbjct: 131 LVETMAERGCAPTVVTYNSIITGF 154
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY L+ CK R + + ++ G P++VTY+ +ID +C LR+A+
Sbjct: 177 PDIITYTALIGGFCKSRDVGRGLELLGEV-TRRGFTPDIVTYSTVIDGLCKAGRLRDAVD 235
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +S + P YN+++ GY
Sbjct: 236 IFEEMSCA---PTAITYNSLIGGY 256
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + + TY+ LV LCKC L V+ M A G P +VTY +I C +
Sbjct: 100 MLHRGMAANAITYSALVDGLCKCERLDEAVALVETM-AERGCAPTVVTYNSIITGFCRAR 158
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + G PD Y ++ G+
Sbjct: 159 RVDEAHGFMEQMVAEGCHPDIITYTALIGGF 189
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +L PD+ T+ LV LC + ++++ G P + TY ++D C
Sbjct: 307 MVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI-TRRGCPPTIYTYNCVVDGYCKAN 365
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+R+A LV+ GF P+ YN ++ G
Sbjct: 366 QVRKAEELVADFRSRGFVPNTVTYNILVAG 395
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I+TYN +V CK + V R S G PN VTY IL+ C +A+
Sbjct: 348 PPTIYTYNCVVDGYCKANQVRKAEELVADFR-SRGFVPNTVTYNILVAGCCRAGRTDQAL 406
Query: 67 RLVSALSDSG 76
+ + L+ G
Sbjct: 407 QYLDQLNSEG 416
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT-YTILIDNVCNTKNLREAM 66
P+ TYN LV C+ ++DQ+ + G P V Y I++D +C +A+
Sbjct: 384 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 443
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+ + G+ P + T++
Sbjct: 444 QFYEEMIQRGYVPAAATFATVV 465
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP++ TY ++ LCK + + QM G++PN+VTYT LI + +
Sbjct: 233 QGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQM-IDKGVRPNIVTYTCLIHGYLSIGQWK 291
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E +R++ +S G +PDCF Y ++
Sbjct: 292 EVVRMLKEMSAHGLEPDCFTYGLLL 316
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+I TY L+ V + +M A G++P+ TY +L+D +C
Sbjct: 265 MIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAH-GLEPDCFTYGLLLDYLCKKG 323
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L ++ G KPD +Y I+ GY
Sbjct: 324 KCTEARKLFDSMIRKGIKPDVSIYGIILHGY 354
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ +YN ++ + YN M GI PN+VTYTI+ID +C + + A
Sbjct: 201 PPNLVSYNTVINGFFTEGQVDKAYNLFLDM-TDQGIPPNVVTYTIVIDGLCKAQVVDRAE 259
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G +P+ Y ++ GY
Sbjct: 260 GVFQQMIDKGVRPNIVTYTCLIHGY 284
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN L++ C +D M S+G+KPN TY L+ C + +A
Sbjct: 517 PDIISYNALIRGHCLVGKTDEASKLLDIM-LSVGLKPNECTYNTLLHGYCRDGRIDDAYS 575
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + +G P YNTI+ G
Sbjct: 576 VFQEMLSNGITPVVVTYNTILHG 598
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+FTY+ LV C C+ L + + + ++V L+ +C+ K + E
Sbjct: 89 KVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGE 148
Query: 65 AMR-LVSALSDSGFKPDCFVYNTIMKGY 91
AM L+ +S+ G P+ YNT++KG+
Sbjct: 149 AMGVLLRRMSELGCTPNVVSYNTLLKGF 176
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+I + LV LC +M + GI PN+V + ++ N+C
Sbjct: 440 MINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEM-VNQGIHPNVVFFNTIMCNLCTEG 498
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A RL+ + G +PD YN +++G+
Sbjct: 499 RVMKAQRLIDLMERVGTRPDIISYNALIRGH 529
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ +N ++ LC + +D M +G +P++++Y LI C
Sbjct: 475 MVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLME-RVGTRPDIISYNALIRGHCLVG 533
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L+ + G KP+ YNT++ GY
Sbjct: 534 KTDEASKLLDIMLSVGLKPNECTYNTLLHGY 564
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
L+K LC + + + + + LG PN+V+Y L+ C+ EA+ L+ ++D
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195
Query: 76 GFK---PDCFVYNTIMKGY 91
+ P+ YNT++ G+
Sbjct: 196 QVRSCPPNLVSYNTVINGF 214
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ C+ + Y+ +M ++ GI P +VTY ++ + T+ EA
Sbjct: 550 LKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSN-GITPVVVTYNTILHGLFKTRRFSEA 608
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + SG + + YN I+ G
Sbjct: 609 KELYLNMITSGKQWSIYTYNIILNG 633
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD+ Y ++ +L+ +++F+D M + GI PN + I+
Sbjct: 335 MIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGN-GISPNHYIFNIVFCAFAKKA 393
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EAM + + + G P+ Y T++
Sbjct: 394 MIGEAMDIFNKMRQQGLSPNVVNYATLI 421
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + +N + K + + ++MR G+ PN+V Y LID +C
Sbjct: 370 MVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQ-GLSPNVVNYATLIDALCKLG 428
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A + + + G P+ V+ +++ G
Sbjct: 429 RVDDAELKFNQMINEGVAPNIVVFTSLVYG 458
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ P D+ +YN L+K LCK ++ +++M GIKPN +Y +LI+ +C
Sbjct: 517 MVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTK-GIKPNNFSYNMLINELCKAG 575
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+R+A+ L + + G PD YNT++ G
Sbjct: 576 KVRDALELSKEMLNQGLTPDIVTYNTLING 605
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 36/120 (30%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC------ 57
K PPD+ TYN L+ LCK + +D+M G PN+VTY+ L+ + C
Sbjct: 345 KGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEK-GCAPNIVTYSTLLHSFCRNGMWD 403
Query: 58 ----------------NTK-------------NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N++ L EAMRLV + G KPD YNTI+
Sbjct: 404 DARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTII 463
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ F+YN L+ LCK + +M + G+ P++VTY LI+ +C
Sbjct: 552 MMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEM-LNQGLTPDIVTYNTLINGLCKVG 610
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L+ L + PD YN ++
Sbjct: 611 WTHAALNLLEKLPNENVHPDIVTYNILI 638
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ LCK N ++++ + + P++VTY ILI C + L +A
Sbjct: 592 LTPDIVTYNTLINGLCKVGWTHAALNLLEKL-PNENVHPDIVTYNILISWHCKVRLLDDA 650
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ G P+ + +++ +
Sbjct: 651 SMLLDKAVSGGIVPNERTWGMMVQNF 676
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 30/114 (26%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVD------------------------------QMR 37
P + TY FL++ LC+ R Y + +M
Sbjct: 283 PSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMM 342
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S G P++ TY IL+ +C A+R++ + + G P+ Y+T++ +
Sbjct: 343 GSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSF 396
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN ++ L K L V +M+ S G KP++ TY +I ++CN + EA + L
Sbjct: 424 YNGIIYALGKDGKLDEAMRLVQEMK-SQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNL 482
Query: 73 SDSGFKPDCFVYNTIM 88
+ G + YNT++
Sbjct: 483 LEEGVVANGITYNTLI 498
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LC + + + G+ N +TY LI + ++ +E +R
Sbjct: 454 PDICTYNTIIYHLCNNDQMDEAEHIFGNLLEE-GVVANGITYNTLIHALLHSGRWQEGLR 512
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G D YN ++K
Sbjct: 513 LANEMVLHGCPLDVVSYNGLIKA 535
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ T+N +V LC + VD+M G P++VTY L+ +C T+ EA +
Sbjct: 249 DVNTFNDVVLGLCGLGHVREAARLVDRMMMH-GCTPSVVTYGFLLRGLCRTRQADEAYAM 307
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + + + + NT+++G
Sbjct: 308 LGRVPEV----NVVMLNTVIRG 325
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L PDIFT N ++ LCK R + F+D R +G+ P++VTY LID C ++
Sbjct: 667 RGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCR--MGLSPDIVTYNTLIDGYCKAFDV 724
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ +SDSG++PD YN + GY
Sbjct: 725 GGADDLMMKMSDSGWEPDLTTYNIRIHGY 753
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ CK + + + +M S G +P+L TY I I C + + A
Sbjct: 704 LSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDS-GWEPDLTTYNIRIHGYCTVRKINRA 762
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ ++ L G P+ YNT++
Sbjct: 763 VMILEELISVGIVPNTVTYNTMI 785
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD + + LC +T Y+ F D +R G PN Y LI C L EA+
Sbjct: 601 PDAVAFAAFINGLCISGLMTDAYDVFSDMLRK--GFVPNNFVYNSLIGGFCKVGKLNEAL 658
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+LV ++ G PD F N I+ G
Sbjct: 659 KLVREMNKRGLLPDIFTVNMIICG 682
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ F YN L+ CK L V +M G+ P++ T ++I +C
Sbjct: 629 MLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKR-GLLPDIFTVNMIICGLCKQG 687
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A+ + G PD YNT++ GY
Sbjct: 688 RMKLAIETFMDMCRMGLSPDIVTYNTLIDGY 718
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+++YN ++ C + + ++ M + G KP++ T+ +ID C N+ A +
Sbjct: 321 PDVYSYNIVINANCLKGQSSYALHLLNLMIEN-GCKPSIATFCTIIDAFCKEGNVELARK 379
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ D G + VYN ++ GY
Sbjct: 380 YFDEIEDMGLSQNTIVYNIMISGY 403
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN + C R + ++++ S+GI PN VTY +I+ VCN L AM
Sbjct: 741 PDLTTYNIRIHGYCTVRKINRAVMILEEL-ISVGIVPNTVTYNTMINAVCNVI-LDHAMI 798
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + L F P+ N ++ +
Sbjct: 799 LTAKLLKMAFVPNTVTVNVLLSQF 822
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I T+ ++ CK ++ + D++ +G+ N + Y I+I +++ +A
Sbjct: 356 PSIATFCTIIDAFCKEGNVELARKYFDEIE-DMGLSQNTIVYNIMISGYVKARDISQANL 414
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + PD +NT++ G+
Sbjct: 415 LFEEMRTKDIVPDGITFNTLVAGH 438
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P + L+ + ++ + ++M+ G+ P+ V + I+ +C +
Sbjct: 559 MIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGR-GVFPDAVAFAAFINGLCISG 617
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + S + GF P+ FVYN+++ G+
Sbjct: 618 LMTDAYDVFSDMLRKGFVPNNFVYNSLIGGF 648
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ PD+ ++ +V LCK +T ++ VD M G++PN+VTY L+D C
Sbjct: 270 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR-GVEPNVVTYNALMDGHCLQS 328
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + +G+ P+ YNT++ GY
Sbjct: 329 EMDEAVKVFDTMVHNGYAPNVISYNTLINGY 359
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI Y ++ +C+ L + + +S G++PN+ TYTI+I+ +C L EA
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDIFSNL-SSKGLRPNVRTYTIMINGLCRRGLLDEA 507
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + +G PD YNTI +G
Sbjct: 508 NKLFMEMDGNGCSPDGCTYNTITQG 532
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDIFTY L+ LC V ++QM S I P++V ++ ++D +C
Sbjct: 235 MVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINS-KIMPDVVIFSTVVDALCKEG 293
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +P+ YN +M G+
Sbjct: 294 KITEAHDVVDMMIIRGVEPNVVTYNALMDGH 324
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LCK R +T +N +M GI P++ TYT LI ++CN +
Sbjct: 207 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ-GISPDIFTYTSLIHSLCNLCEWKHVTT 265
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + +S PD +++T++
Sbjct: 266 LLNQMINSKIMPDVVIFSTVVDA 288
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T N L+ C L ++ + ++ LG +P+ T+T LI +C + +A
Sbjct: 100 IPPDVYTLNILINSFCHLNRLGFAFSVLAKI-LKLGHQPDTATFTTLIRGLCVEGKIGDA 158
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+P+ Y T++ G
Sbjct: 159 LHLFDKMIGEGFQPNVVTYGTLING 183
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ LC + + D+M G +PN+VTY LI+ +C N A+R
Sbjct: 137 PDTATFTTLIRGLCVEGKIGDALHLFDKMIGE-GFQPNVVTYGTLINGLCKVGNTNAAIR 195
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +PD VY +I+
Sbjct: 196 LLRSMEQGNCQPDVVVYTSII 216
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK + + M +P++V YT +ID++C +
Sbjct: 165 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQG-NCQPDVVVYTSIIDSLCKDR 223
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EA L S + G PD F Y +++
Sbjct: 224 QVTEAFNLFSKMVGQGISPDIFTYTSLIH 252
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L P+ TYN L+ C L +M A G P+L TY IL+D +C +L
Sbjct: 378 KELIPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAH-GQIPDLATYRILLDYLCKKSHLD 435
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ + S PD +Y ++ G
Sbjct: 436 EAMALLKTIEGSNMDPDIQIYTIVIDG 462
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP +N L+ + K + TV++ +QM S GI P++ T ILI++ C+ L A
Sbjct: 66 PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMD-SFGIPPDVYTLNILINSFCHLNRLGFAF 124
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G +PD + T+++G
Sbjct: 125 SVLAKILKLGHQPDTATFTTLIRG 148
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TYN L+ C + D M + G PN+++Y LI+ C +
Sbjct: 305 MIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHN-GYAPNVISYNTLINGYCKIQ 363
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +A L + P+ YNT+M
Sbjct: 364 RMDKATYLFEEMCQKELIPNTVTYNTLMH 392
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F YN L+ LCK R D+M +G++PN VTY+ILID C L A+
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRM-GKIGLRPNDVTYSILIDMFCRRGKLDTALS 423
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D+G K + YN+++ G+
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGH 447
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K L + TYN L++ C+ + + +M G+ P+ +TYT +I+ +C +
Sbjct: 779 ILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGD-GVSPDCITYTTMINELCRRND 837
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ L +++++ G +PD YNT++ G
Sbjct: 838 VKKAIELWNSMTEKGIRPDRVAYNTLIHG 866
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++ Y +++ LC+ + L+ + M A+ G N+V Y +LID +C + + EA+
Sbjct: 225 PDVYIYTGVIRSLCELKDLSRAKEMIAHMEAT-GCDVNIVPYNVLIDGLCKKQKVWEAVG 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L+ KPD Y T++ G
Sbjct: 284 IKKDLAGKDLKPDVVTYCTLVYG 306
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I+T+ L+ L + + ++M A +KPN VTY ++I+ C ++
Sbjct: 501 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEM-AEWNVKPNRVTYNVMIEGYCEEGDMS 559
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + +++ G PD + Y ++ G
Sbjct: 560 KAFEFLKEMTEKGIVPDTYSYRPLIHG 586
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TY LV LCK + +D+M L P+ + L++ + +
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEM-LCLRFSPSEAAVSSLVEGLRKRGKIE 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ LV + D G P+ FVYN ++
Sbjct: 350 EALNLVKRVVDFGVSPNLFVYNALI 374
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L P + TY L+ C + +M GI P++ T+T L+ +
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAG 521
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+A++L + +++ KP+ YN +++GY
Sbjct: 522 LIRDAVKLFNEMAEWNVKPNRVTYNVMIEGY 552
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++ YN L+ CK ++ F+ +M + ++P +VTYT L+ C+ + +A+RL
Sbjct: 437 VYPYNSLINGHCKFGDISAAEGFMAEM-INKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
++ G P + + T++ G
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSG 516
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 1 LIFK------QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
L+FK L P++ T + L+ L K R + M S+GI+P++ YT +I
Sbjct: 177 LVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM-VSVGIRPDVYIYTGVIR 235
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++C K+L A +++ + +G + YN ++ G
Sbjct: 236 SLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDG 271
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ C+ L T +F+ +M G+K ++ Y LI+ C ++ A
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEM-VDTGLKLSVYPYNSLINGHCKFGDISAA 456
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +P Y ++M GY
Sbjct: 457 EGFMAEMINKKLEPTVVTYTSLMGGY 482
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD ++Y L+ LC + FVD + + N + YT L+ C L
Sbjct: 571 KGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKG-NCELNEICYTGLLHGFCREGKLE 629
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + + G D Y ++ G
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDG 656
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ ++L PD+ YN L+ +C+ L D M A I PN VTY+ILID+ C
Sbjct: 428 LLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAR-EIFPNHVTYSILIDSHCEKG 486
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + G P+ YN+I+KGY
Sbjct: 487 QVEEAFGFLDEMVSKGNLPNIMTYNSIIKGY 517
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK L +++M+ G+ P+L T+T LI C N +A++
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEELLNEMKER-GVTPDLCTFTTLIHGYCRDGNFEKALQ 423
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L +PD YN+++ G
Sbjct: 424 LFDTLLHQRLRPDVVAYNSLIDG 446
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+ TY+ L+ C+ + + F+D+M S G PN++TY +I C + N++
Sbjct: 466 REIFPNHVTYSILIDSHCEKGQVEEAFGFLDEM-VSKGNLPNIMTYNSIIKGYCRSGNVK 524
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + PD +NT++ GY
Sbjct: 525 KGQQFLQKMMQDNILPDLITFNTLIHGY 552
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y ++ C+ S++ D+M LG P++VTY L++ +C L +A
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEM-VGLGCLPDVVTYNTLLNGLCKQHRLLDA 386
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + G PD + T++ GY
Sbjct: 387 EELLNEMKERGVTPDLCTFTTLIHGY 412
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ K ++ +N + M + ++P+ VTY ++I+ N+ EA R
Sbjct: 540 PDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM-VQPDAVTYNMIINGFSEQGNMEEAGR 598
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + SG +PD + Y +++ G+
Sbjct: 599 VFKKMGASGIEPDRYTYMSLINGH 622
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN ++K C+ ++ F+ +M I P+L+T+ LI +N+ A
Sbjct: 505 PNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQD-NILPDLITFNTLIHGYIKEENMHGAFN 563
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + +PD YN I+ G+
Sbjct: 564 VFNIMEKEMVQPDAVTYNMIINGF 587
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSL---TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K L P I T+N ++K LCK R V+ +DQ + P++ ++ ILI C
Sbjct: 221 KGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQ----CSVAPDVRSFNILIGGFCRVG 276
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EAM+ + G PD ++ ++
Sbjct: 277 EVEEAMKFYKEMQQRGVTPDVVSFSCLI 304
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ +++ L+ + ++ +M+ LG+ P+ V YT++I C ++
Sbjct: 291 RGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKG-LGLVPDGVIYTMVIGGFCRAGSMS 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R+ + G PD YNT++ G
Sbjct: 350 EALRVRDEMVGLGCLPDVVTYNTLLNG 376
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ + + VD M A+ G+KP +VT+ ++ +C + +A
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSM-ANKGLKPGIVTFNSVLKGLCKHRRFDKAKE 248
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ PD +N ++ G+
Sbjct: 249 VFRAMDQCSVAPDVRSFNILIGGF 272
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T N +V CK + +M + P++VT+ +LID ++ A+ LV
Sbjct: 158 YTLNIMVHSYCKSLEFDKADTVISEMEKRC-VFPDVVTHNVLIDARFRAGDVDAAIALVD 216
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
++++ G KP +N+++KG
Sbjct: 217 SMANKGLKPGIVTFNSVLKG 236
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ + ++ +M AS GI+P+ TY LI+ N +EA +
Sbjct: 575 PDAVTYNMIINGFSEQGNMEEAGRVFKKMGAS-GIEPDRYTYMSLINGHVTAGNSKEAFQ 633
Query: 68 LVSALSDSGFKPD 80
L + GF PD
Sbjct: 634 LHDEMMHRGFAPD 646
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD+ TYN ++ LC L + +D++ G KP+++TYTILI+ +
Sbjct: 160 RGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKD-GCKPSVITYTILIEATILEGRIN 218
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L L G +PD + YN I++G
Sbjct: 219 EALELFDELVSRGLRPDLYTYNAIIRG 245
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+++YN ++ K + + D+MR S G P++VTY I+I ++C+ L A
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMR-SRGFSPDVVTYNIMIGSLCSRGKLELAFE 187
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ L G KP Y +++
Sbjct: 188 VMDELLKDGCKPSVITYTILIEA 210
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS--------------------- 39
L+ + L PD++TYN +++ +CK +FV + A
Sbjct: 227 LVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSR 286
Query: 40 -------------LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
G +PN+VT++ILI + C +REA+ ++ + + G PD + Y+
Sbjct: 287 WEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDP 346
Query: 87 IMKGY 91
++ +
Sbjct: 347 LISAF 351
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + D++ S G++P+L TY +I +C A+
Sbjct: 199 PSVITYTILIEATILEGRINEALELFDEL-VSRGLRPDLYTYNAIIRGICKEGMEDRALD 257
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V LS G PD YN +++ +
Sbjct: 258 FVRHLSARGCNPDVVSYNILLRSF 281
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD TYN L+ CLC+ + + M A+ +P ++++ I++ +C
Sbjct: 437 MIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATR-FQPTVISFNIVLLGMCKAH 495
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E + L+ + + G P+ Y +++G
Sbjct: 496 RVFEGIELLITMVEKGCLPNETSYVLLIEG 525
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S G KP++V T LI N++NL++AMR++ L G PD + YN ++ G+
Sbjct: 90 SKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGF 141
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + YN + L C + + +M GI P+ +TY LI +C + EA+
Sbjct: 408 PPTVRAYNTMFSALWSCGNKIKALEMISEM-IRKGIDPDEITYNSLISCLCRDGLVDEAI 466
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + + F+P +N ++ G
Sbjct: 467 GLLVDMEATRFQPTVISFNIVLLG 490
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ P++ T++ L+ C+ + N ++ M+ G+ P+ +Y LI C
Sbjct: 297 MVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEK-GLTPDSYSYDPLISAFCKEG 355
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A+ + + G PD YNTI+
Sbjct: 356 RLDLAIEYLEKMVSDGCLPDIVNYNTIL 383
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD ++Y+ L+ CK L ++++M S G P++V Y ++ +C
Sbjct: 335 KGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM-VSDGCLPDIVNYNTILATLCKFGCAD 393
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
A+ + L + G P YNT+
Sbjct: 394 LALDVFEKLDEVGCPPTVRAYNTM 417
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 8 PDIFTYNFLVKCLCK--CRSLT-TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
PDI YN ++ LCK C L V+ +D+ +G P + Y + + + N +
Sbjct: 374 PDIVNYNTILATLCKFGCADLALDVFEKLDE----VGCPPTVRAYNTMFSALWSCGNKIK 429
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A+ ++S + G PD YN+++
Sbjct: 430 ALEMISEMIRKGIDPDEITYNSLI 453
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L PD+F+YN L+ K + ++ +M GI PN+VTY+ LI+ +C TK
Sbjct: 215 LLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQ-GIMPNVVTYSSLINGLCKTK 273
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A R++ + +G +P+ YN ++ GY
Sbjct: 274 EMDKAERVLRQMVGAGVRPNNMTYNCLIHGY 304
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I + ++ LCK + + VD + G +PNL+T+ L+D C N++EA+
Sbjct: 502 PPCIKFFTSIINNLCKEGRVAEGKDVVDLI-IHTGQRPNLITFNSLVDGYCLVGNMKEAV 560
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +PD + YNT++ GY
Sbjct: 561 GLLDSMESVGVEPDIYTYNTLVDGY 585
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK + + + QM + G++PN +TY LI + +E++R
Sbjct: 257 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGA-GVRPNNMTYNCLIHGYSTSGMWKESVR 315
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +S S PD N+ M
Sbjct: 316 VFKEMSSSLLVPDVGNCNSFM 336
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T++ ++ C+ L + M G+ P+ Y+ LI CN ++L +A
Sbjct: 432 PDIITFSTVISAFCRLGRLDDAMEKFNHM-IDTGVPPDTAVYSCLIQGQCNRRDLVKAKE 490
Query: 68 LVSALSDSGFKPDCFVYNT 86
L+S + G P C + T
Sbjct: 491 LISDMLSKGIPPPCIKFFT 509
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N LV C ++ +D M S+G++P++ TY L+D C + +A+
Sbjct: 538 PNLITFNSLVDGYCLVGNMKEAVGLLDSME-SVGVEPDIYTYNTLVDGYCKHGRIDDALT 596
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + YN I+ G
Sbjct: 597 LFRDMLHKRVTLTSVSYNIILHG 619
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +N L+ + + + M G+ P+++T++ +I C L +AM
Sbjct: 397 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQ-GVNPDIITFSTVISAFCRLGRLDDAME 455
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D+G PD VY+ +++G
Sbjct: 456 KFNHMIDTGVPPDTAVYSCLIQG 478
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T+N +++ + K + ++ G+ P ++TY ++I N+ ++ +A L
Sbjct: 679 DILTFNIVIRAMFKVGRRQEAKELFAAI-STYGLVPTILTYRVMITNLIKEESFEDADNL 737
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
S++ S PD + N I++
Sbjct: 738 FSSMEKSSCTPDSRILNEIIR 758
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ N + LCK + + D M G KP++++Y L+
Sbjct: 316 VFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLK-GPKPDVISYGALLHGY 374
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + + G PD V+NT++ Y
Sbjct: 375 ATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 409
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L PDIFT N ++ LCK R + F+D R +G+ P++VTY LID C ++
Sbjct: 636 RGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCR--MGLSPDIVTYNTLIDGYCKAFDV 693
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ +SDSG++PD YN + GY
Sbjct: 694 GGADDLMMKMSDSGWEPDLTTYNIRIHGY 722
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ CK + + + +M S G +P+L TY I I C + + A
Sbjct: 673 LSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDS-GWEPDLTTYNIRIHGYCTVRKINRA 731
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ ++ L G P+ YNT++
Sbjct: 732 VMILEELISVGIVPNTVTYNTMI 754
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD + + LC +T Y+ F D +R G PN Y LI C L EA+
Sbjct: 570 PDAVAFAAFINGLCISGLMTDAYDVFSDMLRK--GFVPNNFVYNSLIGGFCKVGKLNEAL 627
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+LV ++ G PD F N I+ G
Sbjct: 628 KLVREMNKRGLLPDIFTVNMIICG 651
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ F YN L+ CK L V +M G+ P++ T ++I +C
Sbjct: 598 MLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKR-GLLPDIFTVNMIICGLCKQG 656
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A+ + G PD YNT++ GY
Sbjct: 657 RMKLAIETFMDMCRMGLSPDIVTYNTLIDGY 687
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+++YN ++ C + + ++ M + G KP++ T+ +ID C N+ A
Sbjct: 289 EPDVYSYNIVINANCLKGQSSYALHLLNLMIEN-GCKPSIATFCTIIDAFCKEGNVELAR 347
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G + VYN ++ GY
Sbjct: 348 KYFDEIEDMGLSQNTIVYNIMISGY 372
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN + C R + ++++ S+GI PN VTY +I+ VCN L AM
Sbjct: 709 EPDLTTYNIRIHGYCTVRKINRAVMILEEL-ISVGIVPNTVTYNTMINAVCNVI-LDHAM 766
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L + L F P+ N ++ +
Sbjct: 767 ILTAKLLKMAFVPNTVTVNVLLSQF 791
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I T+ ++ CK ++ + D++ +G+ N + Y I+I +++ +A
Sbjct: 325 PSIATFCTIIDAFCKEGNVELARKYFDEIE-DMGLSQNTIVYNIMISGYVKARDISQANL 383
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + PD +NT++ G+
Sbjct: 384 LFEEMRTKDIVPDGITFNTLVAGH 407
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P + L+ + ++ + ++M+ G+ P+ V + I+ +C +
Sbjct: 528 MIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGR-GVFPDAVAFAAFINGLCISG 586
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + S + GF P+ FVYN+++ G+
Sbjct: 587 LMTDAYDVFSDMLRKGFVPNNFVYNSLIGGF 617
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L LCK + + V +M + G PNLVTY LID +C +A
Sbjct: 113 PDVVTYSILADGLCKRGRIDEAFELVKEMSGN-GCTPNLVTYNTLIDGLCKASKTEKAYE 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ L SGF PD Y I+ G
Sbjct: 172 LLETLVSSGFVPDVVTYTIIVDG 194
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+FTYN L+ LCK + +M G+ P+ VT+ ++D +C
Sbjct: 4 RKVAPDVFTYNILIDGLCKASKTDKASEMLHEM-VDRGVTPDTVTFNSIMDGLCKAGKFE 62
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L++ +++ +P C YNT++ G
Sbjct: 63 RAHSLLAVMAERNCRPSCCTYNTLISG 89
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK Y ++ + +S G P++VTYTI++D +C L +A++
Sbjct: 148 PNLVTYNTLIDGLCKASKTEKAYELLETLVSS-GFVPDVVTYTIIVDGLCKEGRLDKALK 206
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V + G P Y +M+G
Sbjct: 207 MVEGMLKRGCTPSVITYTALMEG 229
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN L+ LCK +++ VD+ +S G P++VTY+IL D +C + EA
Sbjct: 78 PSCCTYNTLISGLCKQQNVDRAKTLVDEFVSS-GFVPDVVTYSILADGLCKRGRIDEAFE 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV +S +G P+ YNT++ G
Sbjct: 137 LVKEMSGNGCTPNLVTYNTLIDG 159
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN ++ LCK + + F++ M S G P++V+Y I+ID + +EA +
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDEAFPFLESMH-SAGCVPDVVSYNIIIDGLFKASKPKEARQ 378
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G PD YNT+M +
Sbjct: 379 VLDQMIQAGIPPDAVTYNTLMAQF 402
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD T+N ++ LCK ++ + M A +P+ TY LI +C +
Sbjct: 36 MVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM-AERNCRPSCCTYNTLISGLCKQQ 94
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A LV SGF PD Y+ + G
Sbjct: 95 NVDRAKTLVDEFVSSGFVPDVVTYSILADG 124
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN ++ L K +DQM + GI P+ VTY L+ C + +A+
Sbjct: 355 PDVVSYNIIIDGLFKASKPKEARQVLDQMIQA-GIPPDAVTYNTLMAQFCKEERFDDAVG 413
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + +G PD YNT++ G
Sbjct: 414 ILKNMIKAGVDPDNVTYNTLISG 436
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TYN ++ CLCK + + D+M A GI + V+YT+LI +C
Sbjct: 592 MVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM-AVRGIVASSVSYTVLIYGLCGQG 650
Query: 61 NLREAMRLVSALSDSGFKPD 80
+EA++++ ++ S + D
Sbjct: 651 RGKEALQVLEEMASSDCEID 670
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PD+ TY +V LCK L V+ M G P+++TYT L++ +C T
Sbjct: 176 LVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM-LKRGCTPSVITYTALMEGLCRTG 234
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + D Y +++ GY
Sbjct: 235 RVDEAHHIFKEMVSKDCTADALAYVSLVNGY 265
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I YN L+ CK L + N + M A G PN+ TY I++D +C + EA
Sbjct: 285 PYIDVYNALMDGYCKEGRLDEIPNVFEDM-ACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 343
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ +G PD YN I+ G
Sbjct: 344 FLESMHSAGCVPDVVSYNIIIDG 366
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +PPD TYN L+ CK + M + G+ P+ VTY LI + T
Sbjct: 383 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKA-GVDPDNVTYNTLISGLSQTN 441
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIM 88
L +A L+ + +G C YNTI+
Sbjct: 442 RLGDAYELMHEMLRNGCVVSACTTYNTII 470
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD TYN L+ L + L Y + +M + + TY +ID +C
Sbjct: 418 MIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 477
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
L++A+ L+ ++ G + + YN
Sbjct: 478 CLKQALLLMDHMTGHGVEANTVTYN 502
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y ++ LCK L +M A G+ T+ +LID TK L EA+ L
Sbjct: 529 DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTL 588
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G P YN ++
Sbjct: 589 LELMVQRGCSPSVITYNMVI 608
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PPDIFTY+ L+ LCK V +M L I PN+ T+ +ID +C +
Sbjct: 242 KSIPPDIFTYSTLIDALCKLSQWENVRTLFLEM-IHLNIYPNVCTFNSVIDGLCKEGKVE 300
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ + + G PD YN I+ GY
Sbjct: 301 DAEEIMRYMIEKGVDPDVITYNMIIDGY 328
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD+ TYN ++ + D M + I+P++++Y ILI+ K
Sbjct: 309 MIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM-INKSIEPDIISYNILINGYARQK 367
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM++ +S G KP N ++ G
Sbjct: 368 KIDEAMQVCREISQKGLKPSIVTCNVLLHG 397
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PDI +YN L+ + + + ++ + G+KP++VT +L+ +
Sbjct: 344 MINKSIEPDIISYNILINGYARQKKIDEAMQVCREI-SQKGLKPSIVTCNVLLHGLFELG 402
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A + +G PD + + T++ GY
Sbjct: 403 RTKSAQNFFDEMLSAGHIPDLYTHCTLLGGY 433
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I Y ++ LCK L + +++ +G+ P+++TYT +I C L EA +
Sbjct: 457 NIQIYTAVIDGLCKNGKLDKAHATFEKL-PLIGLHPDVITYTAMISGYCQEGLLDEAKDM 515
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D+G D YN I++G+
Sbjct: 516 LRKMEDNGCLADNRTYNVIVRGF 538
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 2 IFKQL------PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
+FK+L P+ Y ++ LCK ++ + M KPN TYTI+ID
Sbjct: 164 LFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQG-STKPNTRTYTIVIDA 222
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C L A L++ + PD F Y+T++
Sbjct: 223 FCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLI 255
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L PD+ TYN L+ C S + +D+M G+KPN VTY +++ +
Sbjct: 347 KLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGK-GVKPNAVTYNVVVKWYVKEGKMDN 405
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + +SGF PDC +NT++ GY
Sbjct: 406 AGNELRKMEESGFSPDCVTFNTLINGY 432
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L+ LCK + + D+M +L + P++VTY LI+ + + +
Sbjct: 315 PDVWTYNMLIGGLCKDGKIDEAFRLKDEME-NLKLLPDVVTYNTLINGCFDCSSSLKGFE 373
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G KP+ YN ++K Y
Sbjct: 374 LIDKMEGKGVKPNAVTYNVVVKWY 397
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ CK L+ + +D+M + G+K N VT ++ +C + L +A +
Sbjct: 420 PDCVTFNTLINGYCKAGRLSEAFRMMDEM-SRKGLKMNSVTLNTILHTLCGERKLDDAYK 478
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S+ S G+ D Y T++ GY
Sbjct: 479 LLSSASKRGYFVDEVSYGTLIMGY 502
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN +VK K + N + +M S G P+ VT+ LI+ C L
Sbjct: 381 KGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEES-GFSPDCVTFNTLINGYCKAGRLS 439
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA R++ +S G K + NTI+
Sbjct: 440 EAFRMMDEMSRKGLKMNSVTLNTIL 464
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+FT N L++ LC L + S G + VTY +I +C
Sbjct: 588 MVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTW-ISKGKAIDAVTYNTIISGLCKED 646
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
EA L++ + + PDC+ YN I+
Sbjct: 647 RFEEAFDLLAEMEEKKLGPDCYTYNAIL 674
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+N LV CK L +D M A + P++ TY +LI +C + EA
Sbjct: 278 LLPNRNTFNILVSGYCKLGWLKEAAQVIDLM-AQNNVLPDVWTYNMLIGGLCKDGKIDEA 336
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + PD YNT++ G
Sbjct: 337 FRLKDEMENLKLLPDVVTYNTLING 361
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN ++ LCK L + + M+ + G+ PN T+ IL+ C L+EA +
Sbjct: 245 PDNVSYNTILDVLCKKGKLNEARDLLLDMKNN-GLLPNRNTFNILVSGYCKLGWLKEAAQ 303
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ + PD + YN ++ G
Sbjct: 304 VIDLMAQNNVLPDVWTYNMLIGG 326
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ P I TYN ++ LC + ++++ S G+ P+ TY +I C +
Sbjct: 521 KEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLES-GLVPDETTYNTIILGYCREGQVE 579
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + + FKPD F N +++G
Sbjct: 580 KAFQFHNKMVKKSFKPDLFTCNILLRG 606
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L PD TYN ++ C+ + + F ++M KP+L T IL+ +C
Sbjct: 553 LLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKM-VKKSFKPDLFTCNILLRGLCTEG 611
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A++L + G D YNTI+ G
Sbjct: 612 MLDKALKLFNTWISKGKAIDAVTYNTIISG 641
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVY----NFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L P++ T N L+ L + S +VY F D ++ LG+K N T+ ILI C
Sbjct: 169 HLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIK--LGVKVNTNTFNILIYGCCIEN 226
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA+ L+ + D PD YNTI+
Sbjct: 227 KLSEAIGLIGKMKDFSCFPDNVSYNTIL 254
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ K D+M+ I P+++TY +I +C++ +++
Sbjct: 491 DEVSYGTLIMGYFKDGKSVEAMKLWDEMKEK-EIIPSIITYNTMIGGLCHSGKTDQSIDK 549
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ L +SG PD YNTI+ GY
Sbjct: 550 LNELLESGLVPDETTYNTIILGY 572
>gi|147742767|gb|ABQ50548.1| hypothetical protein [Brassica rapa]
Length = 229
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN L+ LC L VD + S G P++VT+ ILI+ C K
Sbjct: 1 MITRGIDPDTITYNSLIDGLCIENRLDEANQMVDVVMVSKGCDPDIVTFNILINGYCKAK 60
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E MR+ +S G D YNT+++G+
Sbjct: 61 LVDEGMRVFREISLRGLVADTVTYNTLVQGF 91
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L D TYN LV+ C+ L +M S G +P++VTY IL+D +C+ L
Sbjct: 74 LRGLVADTVTYNTLVQGFCEAGKLDVAKELFQEM-VSQGARPDIVTYRILLDGLCDNGEL 132
Query: 63 REAMRLVSAL-------------------SDSGFKPDCFVYNTIMKGY 91
+EA+ ++ + + G P YNT+++ +
Sbjct: 133 QEALDILEKMQKCKKGSLSEADKLFRKMGEEDGTAPSECTYNTLIRAH 180
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PDI T+N L+ CK + + ++ G+ + VTY L+ C
Sbjct: 37 MVSKGCDPDIVTFNILINGYCKAKLVDEGMRVFREISLR-GLVADTVTYNTLVQGFCEAG 95
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A L + G +PD Y ++ G
Sbjct: 96 KLDVAKELFQEMVSQGARPDIVTYRILLDG 125
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +IFTYN L+ LCK +L + M + G+KP++ TYT +I +C +K L
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEA-GLKPDVYTYTTIIGALCQSKELD 547
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + D G KP YN +M G+
Sbjct: 548 RAHSLLQEMLDKGIKPTIVTYNVLMNGF 575
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TY ++ LC+ + L ++ + +M GIKP +VTY +L++ C + +
Sbjct: 526 LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK-GIKPTIVTYNVLMNGFCMSGRVEGG 584
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL+ + + P+ YN++MK Y
Sbjct: 585 KRLLEWMLEKNIHPNTTTYNSLMKQY 610
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P++ TY L LCK + + +M S G++ N+ TY LI+ +C
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM-CSKGLELNIFTYNSLINGLCKAG 509
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
NL +AMR + + ++G KPD + Y TI+
Sbjct: 510 NLEQAMRTMIDMDEAGLKPDVYTYTTII 537
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TY +V C L T + +M A+ G++ N V YT +I +C+ + +A+
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEM-AARGLELNPVAYTSVIALLCDEGQVSDAV 340
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R+V + G D V+ T+M G+
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGF 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + ++ C+ L N+ D+M+ G+ + VTYT LI+ +C L+EA R+
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKR-GLAADGVTYTALINGLCRAGELKEAERV 412
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D G D Y ++ GY
Sbjct: 413 LQEMEDKGLDVDAVTYTVLIDGY 435
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTT---VYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K L D TY L+ CK +T V+N + Q R + PN+VTYT L D +C
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR----VTPNVVTYTALSDGLCKQG 474
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A L+ + G + + F YN+++ G
Sbjct: 475 DVCAANELLHEMCSKGLELNIFTYNSLING 504
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F++LP + +YN L+K LC + + D+M + P++VTY I++ C
Sbjct: 244 LFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMASP----PDVVTYGIMVHGYCTLS 299
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A++L+S ++ G + + Y +++
Sbjct: 300 ELETAIKLLSEMAARGLELNPVAYTSVI 327
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TYN L+K C +++ + M S + PN TY ILI C +
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM-LSQEVVPNENTYNILIKGHCKAR 649
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N++EA+ S + + GF+ YN +++
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIR 678
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P I TYN L+ C + ++ M I PN TY L+ C K
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEK-NIHPNTTTYNSLMKQYCIEK 614
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++ + + P+ YN ++KG+
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN ++ LCK +++ QM G+KP+ +TYTI+ID +C +
Sbjct: 321 MIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQM-IDKGVKPDNLTYTIIIDGLCKAQ 379
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A + + D G KP+ YN ++ GY
Sbjct: 380 SVDRAEGVFQQMIDKGVKPNNGTYNCLIHGY 410
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN ++ LCK + + + QM G+KPN VTY +ID +C + + A
Sbjct: 221 VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQM-VEKGVKPNNVTYNTIIDGLCKAQEVDMA 279
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + D G KP YNTI+ G
Sbjct: 280 EGVFQKMVDKGVKPSNVTYNTIIDG 304
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDI +N ++ LCK + +D M +G+KP++++Y LID C
Sbjct: 601 MLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSM-VCMGLKPDVISYNTLIDGHCFAS 659
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA++L+ + +G KP+ YNT++ GY
Sbjct: 660 RMDEAVKLLDGMVSAGLKPNIVSYNTLLHGY 690
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TYN ++ LCK + + +M G+KP+ VTY +ID +C +
Sbjct: 251 MVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKM-VDKGVKPSNVTYNTIIDGLCKAQ 309
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + D G KPD YNTI+ G
Sbjct: 310 AVDRAEGVFQQMIDRGVKPDHVTYNTIIDG 339
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P TYN ++ LCK +++ QM G+KP+ VTY +ID +C +
Sbjct: 286 MVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQM-IDRGVKPDHVTYNTIIDGLCKAQ 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A + + D G KPD Y I+ G
Sbjct: 345 AIDKAEGVFQQMIDKGVKPDNLTYTIIIDG 374
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD TY ++ LCK +S+ QM G+KPN TY LI +T
Sbjct: 356 MIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQM-IDKGVKPNNGTYNCLIHGYLSTG 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
E ++ + +S +PD F Y ++
Sbjct: 415 QWEEVVQRIKEMSAHDLEPDVFTYGLLL 442
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ +YN L+ C + +D M S G+KPN+V+Y L+ C + A
Sbjct: 641 LKPDVISYNTLIDGHCFASRMDEAVKLLDGM-VSAGLKPNIVSYNTLLHGYCKAGRIDNA 699
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G P YNTI+ G
Sbjct: 700 YCLFREMLRKGVTPGVETYNTILNG 724
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN ++ + Y+ +M G+ P++VTY +ID +C + + A
Sbjct: 191 PDVVSYNIVINGFFNEGQVDKAYSLFLEM----GVSPDVVTYNTIIDGLCKAQEVDRAED 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G KP+ YNTI+ G
Sbjct: 247 VFQQMVEKGVKPNNVTYNTIIDG 269
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+ +N LV LC V +M + GI+P++V + ++ N+C
Sbjct: 566 MINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEM-LNQGIRPDIVFFNTVLCNLCKEG 624
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL+ ++ G KPD YNT++ G+
Sbjct: 625 RVMEARRLIDSMVCMGLKPDVISYNTLIDGH 655
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+ TYN L+ V + +M A ++P++ TY +L+D +C
Sbjct: 391 MIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAH-DLEPDVFTYGLLLDYLCKNG 449
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L ++ G KP +Y ++ GY
Sbjct: 450 KCNEARSLFDSMIRKGIKPSVTIYGIMLHGY 480
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D N L+K LC + + + + + +G + +V+Y L+ +C+ + EA L
Sbjct: 118 DDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEAREL 177
Query: 69 VSAL---SDSGFKPDCFVYNTIMKGY 91
+ + DS PD YN ++ G+
Sbjct: 178 LHMMVDGQDSSCSPDVVSYNIVINGF 203
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ +N ++ K + V + +M+ G+ PN+VTY LID +C
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQ-GLSPNVVTYGTLIDALCKLG 554
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + + + G P+ V+N+++ G
Sbjct: 555 RVDDAVLQFNQMINEGVTPNNVVFNSLVYG 584
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD TY+ ++ C C+ L + + + G + + + L+ +C+TK + E
Sbjct: 79 KVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKT-GWRVDDIVVNQLLKGLCDTKRVGE 137
Query: 65 AMR-LVSALSDSGFKPDCFVYNTIMKG 90
AM L+ + + G + YNT++KG
Sbjct: 138 AMHVLLRQMPEVGCRLGVVSYNTLLKG 164
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +IFTYN L+ LCK +L + M + G+KP++ TYT +I +C +K L
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEA-GLKPDVYTYTTIIGALCQSKELD 547
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + D G KP YN +M G+
Sbjct: 548 RAHSLLQEMLDKGIKPTIVTYNVLMNGF 575
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TY ++ LC+ + L ++ + +M GIKP +VTY +L++ C + +
Sbjct: 526 LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK-GIKPTIVTYNVLMNGFCMSGRVEGG 584
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL+ + + P+ YN++MK Y
Sbjct: 585 KRLLEWMLEKNIHPNTTTYNSLMKQY 610
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P++ TY L LCK + + +M S G++ N+ TY LI+ +C
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM-CSKGLELNIFTYNSLINGLCKAG 509
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
NL +AMR + + ++G KPD + Y TI+
Sbjct: 510 NLEQAMRTMIDMDEAGLKPDVYTYTTII 537
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TY +V C L T + +M A+ G++ N V YT +I +C+ + +A+
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEM-AARGLELNPVAYTSVIALLCDEGQVSDAV 340
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R+V + G D V+ T+M G+
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGF 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + ++ C+ L N+ D+M+ G+ + VTYT LI+ +C L+EA R+
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKR-GLAADGVTYTALINGLCRAGELKEAERV 412
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D G D Y ++ GY
Sbjct: 413 LQEMEDKGLDVDAVTYTVLIDGY 435
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTT---VYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K L D TY L+ CK +T V+N + Q R + PN+VTYT L D +C
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR----VTPNVVTYTALSDGLCKQG 474
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A L+ + G + + F YN+++ G
Sbjct: 475 DVCAANELLHEMCSKGLELNIFTYNSLING 504
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F++LP + +YN L+K LC + + D+M + P++VTY I++ C
Sbjct: 244 LFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMASP----PDVVTYGIMVHGYCTLS 299
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A++L+S ++ G + + Y +++
Sbjct: 300 ELETAIKLLSEMAARGLELNPVAYTSVI 327
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TYN L+K C +++ + M S + PN TY ILI C +
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM-LSQEVVPNENTYNILIKGHCKAR 649
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N++EA+ S + + GF+ YN +++
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIR 678
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P I TYN L+ C + ++ M I PN TY L+ C K
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEK-NIHPNTTTYNSLMKQYCIEK 614
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++ + + P+ YN ++KG+
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +IFTYN L+ LCK +L + M + G+KP++ TYT +I +C +K L
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEA-GLKPDVYTYTTIIGALCQSKELD 547
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + D G KP YN +M G+
Sbjct: 548 RAHSLLQEMLDKGIKPTIVTYNVLMNGF 575
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TY ++ LC+ + L ++ + +M GIKP +VTY +L++ C + +
Sbjct: 526 LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK-GIKPTIVTYNVLMNGFCMSGRVEGG 584
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL+ + + P+ YN++MK Y
Sbjct: 585 KRLLEWMLEKNIHPNTTTYNSLMKQY 610
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P++ TY L LCK + + +M S G++ N+ TY LI+ +C
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM-CSKGLELNIFTYNSLINGLCKAG 509
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
NL +AMR + + ++G KPD + Y TI+
Sbjct: 510 NLEQAMRTMIDMDEAGLKPDVYTYTTII 537
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TY +V C L T + +M A+ G++ N V YT +I +C+ + +A+
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEM-AARGLELNPVAYTSVIALLCDEGQVSDAV 340
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R+V + G D V+ T+M G+
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGF 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + ++ C+ L N+ D+M+ G+ + VTYT LI+ +C L+EA R+
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKR-GLAADGVTYTALINGLCRAGELKEAERV 412
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D G D Y ++ GY
Sbjct: 413 LQEMEDKGLDVDAVTYTVLIDGY 435
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTT---VYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K L D TY L+ CK +T V+N + Q R + PN+VTYT L D +C
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR----VTPNVVTYTALSDGLCKQG 474
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A L+ + G + + F YN+++ G
Sbjct: 475 DVCAANELLHEMCSKGLELNIFTYNSLING 504
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F++LP + +YN L+K LC + + D+M + P++VTY I++ C
Sbjct: 244 LFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMASP----PDVVTYGIMVHGYCTLS 299
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A++L+S ++ G + + Y +++
Sbjct: 300 ELETAIKLLSEMAARGLELNPVAYTSVI 327
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TYN L+K C +++ + M S + PN TY ILI C +
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM-LSQEVVPNENTYNILIKGHCKAR 649
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N++EA+ S + + GF+ YN +++
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIR 678
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P I TYN L+ C + ++ M I PN TY L+ C K
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEK-NIHPNTTTYNSLMKQYCIEK 614
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++ + + P+ YN ++KG+
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++PPD TYN L++ C L +D+M GI+P+LV+Y LI +++
Sbjct: 388 KRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEM-TKRGIQPDLVSYNTLISGYSMKGDIK 446
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + D GF P YN +++G
Sbjct: 447 DALRVRDEMMDKGFNPTLMTYNALIQG 473
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ YN L+ C + Y + +M I P+ +TY L+ C L
Sbjct: 353 KGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKR-IPPDDMTYNTLMRGFCLLGRLD 411
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ ++ G +PD YNT++ GY
Sbjct: 412 EARTLIDEMTKRGIQPDLVSYNTLISGY 439
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN L+ CK + ++M + G++ VTYT LI ++E R
Sbjct: 287 PDVFTYNILINGYCKEGNEKKALEVFEEM-SQKGVRATAVTYTSLIYVFSRKGQVQETDR 345
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G +PD +YN ++ +
Sbjct: 346 LFNVAVKKGIRPDVVMYNALINSH 369
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ +Q+P P+ TYN ++ C + + +MR GI P+ TY LI C
Sbjct: 138 LLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIG 197
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIMKGY 91
+ +A+++ + G P +YN ++ GY
Sbjct: 198 RMEDAVKVFDEMLTKGEVAPSAVMYNALIGGY 229
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P YN L+ C L + + M GI + TY +L+ + +
Sbjct: 214 EVAPSAVMYNALIGGYCDVGKLDVALQYREDM-VQRGIAMTVATYNLLMHALFMDARASD 272
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ + +GF PD F YN ++ GY
Sbjct: 273 AYAVLEEMQKNGFSPDVFTYNILINGY 299
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ L + Y +++M+ + G P++ TY ILI+ C N ++A+ +
Sbjct: 254 VATYNLLMHALFMDARASDAYAVLEEMQKN-GFSPDVFTYNILINGYCKEGNEKKALEVF 312
Query: 70 SALSDSGFKPDCFVYNTIM 88
+S G + Y +++
Sbjct: 313 EEMSQKGVRATAVTYTSLI 331
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
K P + TYN L++ LCK R N + +M A GI P+ TY LI+ +
Sbjct: 458 KGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAK-GITPDDSTYISLIEGL 509
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K L PD++T+N L+ LCK ++M++S G P+ VTY LIDN+C+
Sbjct: 386 VTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSS-GCTPDEVTYNTLIDNLCSLG 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+ L+ + +G YNTI+ G
Sbjct: 445 KLGKALDLLKEMESAGCPRSTVTYNTIIDG 474
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN +V CLCK L ++QM G P++ T+ LI +C+ L EA+
Sbjct: 323 PDVFTYNIVVNCLCKNGQLEEAKGILNQM-VERGCLPDITTFNTLIVALCSGNRLEEALD 381
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ G PD + +N ++
Sbjct: 382 LARQVTLKGLSPDVYTFNILI 402
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN ++ LCK + DQM GI N +T+ LID +C K + +A
Sbjct: 462 PRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKRIDDAN 520
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+L+S + G +P+ YN+I+ Y
Sbjct: 521 QLISQMISEGLQPNNITYNSILTHY 545
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 1 LIFKQLPP------DIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTI 51
L+ QL P D YN L+ L K + L TVY+ + + GIKP++VT+
Sbjct: 135 LVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGER----GIKPDVVTFNT 190
Query: 52 LIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ +C +R A+ ++ +S SG PD + T+M+G+
Sbjct: 191 LMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGF 230
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ T+N L+K LC+ + T +++M +S G+ P+ T+T L+ +++
Sbjct: 179 RGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSS-GVAPDETTFTTLMQGFVEEGSIK 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+R+ + + + G P N ++ GY
Sbjct: 238 AALRVKARMLEMGCSPTKVTVNVLINGY 265
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ LCK + + + QM S G++PN +TY ++ + C ++++A ++
Sbjct: 502 TFNTLIDGLCKDKRIDDANQLISQM-ISEGLQPNNITYNSILTHYCKQGDIKKAADILQT 560
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +GF+ D Y T++ G
Sbjct: 561 MTANGFEVDVVTYGTLING 579
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T N L+ CK + ++ Q A+ G +P+ +TY ++ +C ++ A++
Sbjct: 253 PTKVTVNVLINGYCKLGRVEDALGYIQQEIAN-GFEPDQITYNTFVNGLCQNGHVGHALK 311
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G PD F YN ++
Sbjct: 312 VMDVMVQEGHDPDVFTYNIVV 332
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN V LC+ + +D M G P++ TY I+++ +C L EA
Sbjct: 288 PDQITYNTFVNGLCQNGHVGHALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 346
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + + G PD +NT++
Sbjct: 347 ILNQMVERGCLPDITTFNTLI 367
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC L + + +M S G + VTY +ID +C + EA
Sbjct: 428 PDEVTYNTLIDNLCSLGKLGKALDLLKEME-SAGCPRSTVTYNTIIDGLCKKMRIEEAEE 486
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + +NT++ G
Sbjct: 487 VFDQMDLQGISRNAITFNTLIDG 509
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L+ LCK + MR G++ Y +I ++ N R+AM L
Sbjct: 569 DVVTYGTLINGLCKAGRTQVALKLLRGMRIK-GMRATPKAYNPVIQSLFRRNNTRDAMNL 627
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ G PD F Y + +G
Sbjct: 628 FREMTEVGEPPDAFTYKIVFRG 649
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ TYN ++ CK + + + M A+ G + ++VTY LI+ +C
Sbjct: 526 MISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTAN-GFEVDVVTYGTLINGLCKAG 584
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A++L+ + G + YN +++
Sbjct: 585 RTQVALKLLRGMRIKGMRATPKAYNPVIQ 613
>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 582
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P++ TYN L+ L K ++ V VD+M G PN++TY ++D +C ++
Sbjct: 379 RKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDR-GQPPNIITYNSILDALCKNHHVD 437
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ L D G +PD + Y ++KG
Sbjct: 438 KAIALLTNLKDQGIRPDMYTYTVLIKG 464
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 7 PPDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
PP+I TYN ++ LCK +++ + N DQ GI+P++ TYT+LI +C + L
Sbjct: 417 PPNIITYNSILDALCKNHHVDKAIALLTNLKDQ-----GIRPDMYTYTVLIKGLCQSGKL 471
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ L G+ D + Y +++G+
Sbjct: 472 EDAQKVFEDLLVKGYNLDVYTYTVMIQGF 500
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK +T + ++ L ++PN V Y ++IDN+C K + +A L
Sbjct: 174 DQVSYGTLINGLCKVGRITAALQLLKRVDGKL-VQPNAVMYNMIIDNMCKAKLVNDAFDL 232
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + PD F N+++ G+
Sbjct: 233 YSQMVAKRISPDDFTCNSLIYGF 255
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD FT N L+ C L + +M I P + T++IL+D C
Sbjct: 236 MVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILE-NINPRMYTFSILVDAFCKEG 294
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ D YN++M GY
Sbjct: 295 KVKEAKMMLGVTMKKDIILDVVTYNSLMDGY 325
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TYN L+ C + + + D M AS G+ N+ +YT +I+ +C K +
Sbjct: 309 KDIILDVVTYNSLMDGYCLVKEINKAKDIFDSM-ASRGVIANVQSYTTMINGLCKIKMVD 367
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + P+ YN+++ G
Sbjct: 368 EAVNLFEEMRCRKIIPNVVTYNSLIDG 394
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ T+N L+K LC + NF D++ A G + V+Y LI+ +C +
Sbjct: 134 KGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQ-GFHLDQVSYGTLINGLCKVGRIT 192
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A++L+ + +P+ +YN I+
Sbjct: 193 AALQLLKRVDGKLVQPNAVMYNMII 217
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++TY L+K LC+ L + + G ++ TYT++I C
Sbjct: 449 QGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVK-GYNLDVYTYTVMIQGFCVKGLFD 507
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L+S + D+G P+ Y ++
Sbjct: 508 AALALLSKMEDNGCIPNAKTYEIVI 532
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FT+N L+ C + + ++ ++ G PN +T+ LI +C ++ +A+
Sbjct: 104 DFFTFNILINCFSQLGLNSLSFSVFGKILKK-GFDPNAITFNTLIKGLCLKGHIHQALNF 162
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ GF D Y T++ G
Sbjct: 163 HDKVVAQGFHLDQVSYGTLING 184
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PPDIFTY+ L+ LCK V +M L I PN+ T+ +ID +C +
Sbjct: 242 KSIPPDIFTYSTLIDALCKLSQWENVRTLFLEM-IHLNIYPNVCTFNSVIDGLCKEGKVE 300
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ + + G PD YN I+ GY
Sbjct: 301 DAEEIMRYMIEKGVDPDVITYNMIIDGY 328
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD+ TYN ++ + D M + I+PN+++Y ILI+ K
Sbjct: 309 MIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM-INKSIEPNIISYNILINGYARQK 367
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM++ +S G KP N ++ G
Sbjct: 368 KIDEAMQVCREISQKGLKPSIVTCNVLLHG 397
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I Y ++ LCK L + +++ +G+ P+++TYT +I C L EA +
Sbjct: 457 NIQIYTAVIDGLCKNGKLDKAHATFEKL-PLIGLHPDVITYTAMISGYCQEGLLDEAKDM 515
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D+G D YN I++G+
Sbjct: 516 LRKMEDNGCLADNRTYNVIVRGF 538
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+I +YN L+ + + + ++ + G+KP++VT +L+ +
Sbjct: 344 MINKSIEPNIISYNILINGYARQKKIDEAMQVCREI-SQKGLKPSIVTCNVLLHGLFELG 402
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A + +G PD + + T++ GY
Sbjct: 403 RTKSAQNFFDEMLSAGHIPDLYTHCTLLGGY 433
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 2 IFKQL------PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
+FK+L P+ Y ++ LCK ++ + M KPN Y+I+ID
Sbjct: 164 LFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQG-STKPNTCIYSIVIDA 222
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C L A L++ + PD F Y+T++
Sbjct: 223 FCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLI 255
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ CK SL +R + G+ P ++TY ILID C +L EA
Sbjct: 374 LQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHA-GLAPTVLTYNILIDGYCRLGDLEEA 432
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + G PD Y +MKG
Sbjct: 433 RRLKEEMVEQGCLPDVCTYTILMKG 457
Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC+ Y +M G+ PN TYT+LID C N +AMR
Sbjct: 621 PNEITYNVLIHALCRTGRTQLAYRHFHEM-LERGLVPNKYTYTLLIDGNCKEGNWEDAMR 679
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +G PD + + KG+
Sbjct: 680 FYFEMHQNGIHPDYLTHKALFKGF 703
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD F YN ++ ++ + + M GI + VTY ILID +C T
Sbjct: 474 MLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLE-GISSDTVTYNILIDGLCKTG 532
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL +A L + +G +PDC Y ++ +
Sbjct: 533 NLNDAKDLQMKMVHNGLQPDCITYTCLIHAH 563
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ L + + +MRA +G++P+++TY L++ C +L+EA+
Sbjct: 341 PTVVTYNAMIHGLLQSGQVEAAQVKFVEMRA-MGLQPDVITYNSLLNGYCKAGSLKEALL 399
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L +G P YN ++ GY
Sbjct: 400 LFGDLRHAGLAPTVLTYNILIDGY 423
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + D TYN L+ LCK +L + +M + G++P+ +TYT LI C
Sbjct: 509 MMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHN-GLQPDCITYTCLIHAHCERG 567
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA + + G P Y + Y
Sbjct: 568 LLREARKFFKDMISDGLAPSAVTYTVFIHAY 598
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L P TY + C+ +L + Y + +M G++PN +TY +LI +C T
Sbjct: 579 MISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEE-GVEPNEITYNVLIHALCRTG 637
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A R + + G P+ + Y ++ G
Sbjct: 638 RTQLAYRHFHEMLERGLVPNKYTYTLLIDG 667
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FTYN L+ L + + +M GI P +VTY +I + + + A
Sbjct: 309 FTYNPLITGLLAKGFVKKADDLQLEMENE-GIMPTVVTYNAMIHGLLQSGQVEAAQVKFV 367
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ G +PD YN+++ GY
Sbjct: 368 EMRAMGLQPDVITYNSLLNGY 388
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLR 63
+ P I TYN L+ K V + +M R S G PN VT+ ++I + +L
Sbjct: 233 IEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGS-GCLPNDVTHNVVITGLARKGDLE 291
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +V + S K F YN ++ G
Sbjct: 292 EAAEMVEGMRLSK-KASSFTYNPLITG 317
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ + L PD +YN L+ LC+ R M ++ G PNLVTY+IL+D +
Sbjct: 397 MTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSN-GYPPNLVTYSILLDCLSKQG 455
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +AM L A+ +SG KPD YN ++ G
Sbjct: 456 YLDQAMGLFRAMENSGLKPDLVTYNIMIDG 485
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TY+ L+ CL K L M S G+KP+LVTY I+ID +C ++A
Sbjct: 438 PPNLVTYSILLDCLSKQGYLDQAMGLFRAMENS-GLKPDLVTYNIMIDGMCKYGKFKDAR 496
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + LS G +P+ +V + G
Sbjct: 497 ELFAELSVKGLQPNNWVCTPTIDG 520
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ L + +++M+ I P+LV +++LID +C + EA
Sbjct: 264 PTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGG-NIMPDLVAFSVLIDIMCKEGEVSEARV 322
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +++ G +PD YNT+M GY
Sbjct: 323 ILKTMTEMGVEPDVATYNTLMNGY 346
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ +Y+ ++K LC+ T V ++ M+ +G +P++V Y ++D +C +
Sbjct: 187 MVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKV-VGCEPDVVIYNTIVDRLCKDR 245
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + + +G P Y +++ G
Sbjct: 246 LVNEAVHIFCKMKGTGILPTVVTYTSLIHG 275
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T++ L+ C + D M A G KPN+ +Y+I+I +C E
Sbjct: 157 LEPNVITFSTLINGFCIEGKIGRAIELFDVMVAR-GYKPNVHSYSIIIKGLCRVGKTTEV 215
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L+ + G +PD +YNTI+
Sbjct: 216 IKLLEHMKVVGCEPDVVIYNTIV 238
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ C R V ++ S G P++ +++IL++ C K + EA
Sbjct: 332 VEPDVATYNTLMNGYC-LRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEA 390
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L ++ G PD YNT++ G
Sbjct: 391 KQLFDEMTHRGLIPDTVSYNTLISG 415
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ + L+ C C+ + ++ + ++ LG++PN++T++ LI+ C + A+ L
Sbjct: 125 DVLSLTILINCFCRLCHVDYGFSVLGKI-IKLGLEPNVITFSTLINGFCIEGKIGRAIEL 183
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G+KP+ Y+ I+KG
Sbjct: 184 FDVMVARGYKPNVHSYSIIIKG 205
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ ++ L+ +CK ++ + M +G++P++ TY L++ C + EA +
Sbjct: 299 PDLVAFSVLIDIMCKEGEVSEARVILKTM-TEMGVEPDVATYNTLMNGYCLRMEVVEARK 357
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD F ++ ++ GY
Sbjct: 358 VFEVMISKGRMPDVFSFSILVNGY 381
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L PD+F+YN L+ K + ++ +M GI PN+VTY+ LI+ +C TK
Sbjct: 144 LLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQ-GIMPNVVTYSSLINGLCKTK 202
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A R++ + +G +P+ YN ++ GY
Sbjct: 203 EMDKAERVLRQMVGAGVRPNNMTYNCLIHGY 233
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I + ++ LCK + + VD + G +PNL+T+ L+D C N++EA+
Sbjct: 431 PPCIKFFTSIINNLCKEGRVAEGKDVVDLI-IHTGQRPNLITFNSLVDGYCLVGNMKEAV 489
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +PD + YNT++ GY
Sbjct: 490 GLLDSMESVGVEPDIYTYNTLVDGY 514
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK + + + QM + G++PN +TY LI + +E++R
Sbjct: 186 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGA-GVRPNNMTYNCLIHGYSTSGMWKESVR 244
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +S S PD N+ M
Sbjct: 245 VFKEMSSSLLVPDVGNCNSFM 265
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T++ ++ C+ L + M G+ P+ Y+ LI CN ++L +A
Sbjct: 361 PDIITFSTVISAFCRLGRLDDAMEKFNHM-IDTGVPPDTAVYSCLIQGQCNRRDLVKAKE 419
Query: 68 LVSALSDSGFKPDCFVYNT 86
L+S + G P C + T
Sbjct: 420 LISDMLSKGIPPPCIKFFT 438
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N LV C ++ +D M S+G++P++ TY L+D C + +A+
Sbjct: 467 PNLITFNSLVDGYCLVGNMKEAVGLLDSME-SVGVEPDIYTYNTLVDGYCKHGRIDDALT 525
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + YN I+ G
Sbjct: 526 LFRDMLHKRVTLTSVSYNIILHG 548
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +N L+ + + + M G+ P+++T++ +I C L +AM
Sbjct: 326 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQ-GVNPDIITFSTVISAFCRLGRLDDAME 384
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D+G PD VY+ +++G
Sbjct: 385 KFNHMIDTGVPPDTAVYSCLIQG 407
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T+N +++ + K + ++ G+ P ++TY ++I N+ ++ +A L
Sbjct: 608 DILTFNIVIRAMFKVGRRQEAKELFAAI-STYGLVPTILTYRVMITNLIKEESFEDADNL 666
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
S++ S PD + N I++
Sbjct: 667 FSSMEKSSCTPDSRILNEIIR 687
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ N + LCK + + D M G KP++++Y L+
Sbjct: 245 VFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLK-GPKPDVISYGALLHGY 303
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + + G PD V+NT++ Y
Sbjct: 304 ATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 338
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L++ CK R L + V++MR + G N+VTY LI +C + EA
Sbjct: 239 ISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRET-GCSLNVVTYNTLIGGLCRAGAIEEA 297
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ D G PD F Y I+ G
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIING 322
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I YN L+ CK ++ N + + G+ PN VTYT LID C ++R
Sbjct: 692 KGIEPGISCYNALIDGFCKSDDISHARNIFNSIICK-GLPPNCVTYTTLIDGYCKAGDIR 750
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L + + G PD FVY+ + G
Sbjct: 751 DAIDLYNEMLTEGVAPDAFVYSVLAAG 777
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ CK + +D+M A GI+P + Y LID C + ++ A
Sbjct: 659 LVPDSLIYGSLISGFCKAADMEKAVGLLDEM-AKKGIEPGISCYNALIDGFCKSDDISHA 717
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G P+C Y T++ GY
Sbjct: 718 RNIFNSIICKGLPPNCVTYTTLIDGY 743
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY ++ LCK +D+M + G+ PN+V Y+ LID N EA
Sbjct: 309 LVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCA-GLMPNVVVYSTLIDGFMRQGNADEA 367
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++V +S +G +P+ Y+ +++G
Sbjct: 368 FKIVKEMSAAGVQPNKITYDNLIRG 392
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN +++ + + + +++MR GI PN+ TY+I+I+ +C A L
Sbjct: 417 DTMTYNLVIEGHLRQHNKEEAFLLLNEMRKG-GISPNVYTYSIIINGLCQIGESERASGL 475
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G KP+ FVY ++ GY
Sbjct: 476 LEQMIADGLKPNAFVYAPLISGY 498
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD++ YN L+ L + + D+M G +PN TY LI NL
Sbjct: 517 ENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEK-GFQPNDFTYGGLIHGYSMAGNLE 575
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +L+ + +SG P+ F+Y I++GY
Sbjct: 576 KAEQLLHQMLNSGLNPNDFIYAQILEGY 603
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+++TY+ ++ LC+ ++QM A G+KPN Y LI C + A
Sbjct: 449 ISPNVYTYSIIINGLCQIGESERASGLLEQMIAD-GLKPNAFVYAPLISGYCREGSFSLA 507
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ PD + YN+++ G
Sbjct: 508 CETLKKMTRENLTPDLYCYNSLIIG 532
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y+ L+ + + + V +M A+ G++PN +TY LI +C + A
Sbjct: 344 LMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAA-GVQPNKITYDNLIRGLCKLGRMGRA 402
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++ ++ G+ D YN +++G+
Sbjct: 403 SRILKQMTKIGYMADTMTYNLVIEGH 428
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K LPP+ TY L+ CK + + ++M G+ P+ Y++L N+
Sbjct: 724 IICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTE-GVAPDAFVYSVLAAGCSNSG 782
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L++A+ + + G+ +NT++ G+
Sbjct: 783 DLQQALFITEEMIARGYAI-ISSFNTLVHGF 812
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
GI P++ TY+ LI+ C ++L A ++V + ++G + YNT++ G
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGG 287
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L LC+ R L + V++MR + G+KP+ VTYT LID C L AM +
Sbjct: 383 DLVAYNALANGLCRVRDLKAANDIVEEMRNN-GLKPDKVTYTTLIDGFCKEGELDMAMEM 441
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+SD G D Y T++ G
Sbjct: 442 KQEMSDEGVALDEVTYTTLISG 463
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY ++ LCK + ++MR G+ PN V +T LID C N+ +
Sbjct: 312 PDVYTYGAFMQGLCKAGRIQDAVEMFEEMRER-GVNPNTVVFTTLIDAHCKEGNVAAGLE 370
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ G K D YN + G
Sbjct: 371 LHREMATRGIKTDLVAYNALANG 393
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ CK + T + + +M+ G KP +VTY ++++ C ++ A
Sbjct: 485 LEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNK-GRKPGVVTYNVVMNGFCILGQMKNA 543
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A+ + G PD YN ++ G+
Sbjct: 544 DMLLNAMLNIGVCPDDITYNILLDGH 569
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+ +N L++ + + L + N D+M G+ P +VT+ L+ +C +L A
Sbjct: 240 VPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRR-GVPPTVVTFNTLMSGMCKASDLNSA 298
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ +G PD + Y M+G
Sbjct: 299 NALRGLMAKAGVAPDVYTYGAFMQG 323
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PP + T+N L+ +CK L + N + + A G+ P++ TY + +C
Sbjct: 270 MLRRGVPPTVVTFNTLMSGMCKASDLNSA-NALRGLMAKAGVAPDVYTYGAFMQGLCKAG 328
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A+ + + + G P+ V+ T++ +
Sbjct: 329 RIQDAVEMFEEMRERGVNPNTVVFTTLIDAH 359
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 9 DIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D TY L+ L K RS+ + + M A G++P+ TYT++ID C +++ +
Sbjct: 453 DEVTYTTLISGLSKSGRSVDSERILCEMMEA--GLEPDNTTYTMVIDAFCKNSDVKTGFK 510
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G KP YN +M G+
Sbjct: 511 LLKEMQNKGRKPGVVTYNVVMNGF 534
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ CK L +M + G+ + VTYT LI + + ++
Sbjct: 415 LKPDKVTYTTLIDGFCKEGELDMAMEMKQEM-SDEGVALDEVTYTTLISGLSKSGRSVDS 473
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++ + ++G +PD Y ++ +
Sbjct: 474 ERILCEMMEAGLEPDNTTYTMVIDAF 499
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ C + ++ M ++G+ P+ +TY IL+D C +R+A
Sbjct: 522 PGVVTYNVVMNGFCILGQMKNADMLLNAM-LNIGVCPDDITYNILLDGHCKHGKVRDAEE 580
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L SA G D +Y +++ +
Sbjct: 581 LKSA---KGMVSDFGLYTSLINEF 601
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PP++ TY+ ++ C L + QM + PN VT+TIL+D +C
Sbjct: 237 MVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGR-NVMPNTVTFTILVDGLCKEG 295
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA R+ ++++G +PD + Y+ +M GY
Sbjct: 296 MILEARRVFEMMTENGVEPDAYTYSALMDGY 326
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD TY+ L++ C+ +M S G+ P+ +TY+IL+D +C +L
Sbjct: 380 RDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEM-CSYGLLPDSITYSILLDGLCKHGHLD 438
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA RL+ A+ +S +P +YN +++G
Sbjct: 439 EAFRLLKAMQESKIEPHICIYNILIQG 465
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY ++K LCK T + +M G KP++V Y +ID++C + EAM
Sbjct: 174 PSLITYTTIIKGLCKIGHTTNALQLLKKMEEK-GCKPDVVAYNTVIDSLCKDRRANEAMY 232
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
S + D G P+ Y++I+ G+
Sbjct: 233 FFSEMVDQGIPPNVVTYSSILHGF 256
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +TY+ L+ C + D M G P++ Y ILI+ C ++ L EA
Sbjct: 312 VEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGK-GFAPSVRVYNILINGHCKSRRLNEA 370
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+S + D PD Y+T+M+G+
Sbjct: 371 KTLLSEMYDRDLTPDTVTYSTLMQGF 396
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+ T+ LV LCK + V +M G++P+ TY+ L+D C
Sbjct: 272 MIGRNVMPNTVTFTILVDGLCK-EGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQS 330
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +L + GF P VYN ++ G+
Sbjct: 331 QMDEAQKLFDIMVGKGFAPSVRVYNILINGH 361
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY+ L+ LCK L + + M+ S I+P++ Y ILI +CN L A
Sbjct: 417 LLPDSITYSILLDGLCKHGHLDEAFRLLKAMQES-KIEPHICIYNILIQGMCNFGKLEAA 475
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L S L G +P Y ++ G
Sbjct: 476 RELFSNLFVKGIQPSVVTYTVMISG 500
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P T+ L+ LC + D++ +G P+L+TYT +I +C + A
Sbjct: 137 LQPTHVTFGTLLNGLCSKAKIIDAVKLFDEI-GKMGFAPSLITYTTIIKGLCKIGHTTNA 195
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L+ + + G KPD YNT++
Sbjct: 196 LQLLKKMEEKGCKPDVVAYNTVI 218
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-SLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+++T L+ CLC + F + LG++P VT+ L++ +C+ + +A+
Sbjct: 102 PNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAV 161
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L + GF P Y TI+KG
Sbjct: 162 KLFDEIGKMGFAPSLITYTTIIKG 185
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P I YN L++ +C L + GI+P++VTYT++I + E
Sbjct: 451 KIEPHICIYNILIQGMCNFGKLEAARELFSNLFVK-GIQPSVVTYTVMISGLLKEGLSNE 509
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + +G P+ YN ++G+
Sbjct: 510 ACEMFRKMVVNGCLPNSCTYNVAIQGF 536
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC--N 58
L + LPP + +N L+ L K + +TV + QM S I+PN+ T TILI+ +C N
Sbjct: 61 LGIRPLPP-VVVFNKLLGSLVKKKHYSTVISLCKQMDLS-NIRPNVYTLTILINCLCHSN 118
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A + + G +P + T++ G
Sbjct: 119 RDHVHFAFSALGKMFKLGLQPTHVTFGTLLNG 150
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY+ L+ LCK L D+M+ G++PN +T+T LID ++ + AM
Sbjct: 291 PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR-GLRPNGITFTALIDGQYRSRRMDSAMN 349
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G KPD +YNT++ G
Sbjct: 350 TYHQMLTMGVKPDLVMYNTLLNG 372
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ LCK + VD+M+ +G+KP+ +TYT LID C +L AM
Sbjct: 361 PDLVMYNTLLNGLCKVGDVNKARKLVDEMKM-VGMKPDKITYTTLIDGYCKEGDLESAME 419
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G D + ++ G+
Sbjct: 420 IRKGMNEEGVVLDNVAFTALISGF 443
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ T+ L+ + R + + N QM ++G+KP+LV Y L++ +C ++
Sbjct: 322 RGLRPNGITFTALIDGQYRSRRMDSAMNTYHQM-LTMGVKPDLVMYNTLLNGLCKVGDVN 380
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +LV + G KPD Y T++ GY
Sbjct: 381 KARKLVDEMKMVGMKPDKITYTTLIDGY 408
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PP + YN L+ CK S+ +++R G++P V++ LI+ +C ++NL E
Sbjct: 219 FPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKR-GLRPTTVSFNTLINGLCKSRNLDEG 277
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + ++ PD F Y+ ++ G
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHG 302
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD TY ++ CK ++ + + +M+ + G KP ++TY +L++ +C
Sbjct: 459 MVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQIN-GHKPGVITYNVLMNGLCKQG 517
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A L+ A+ + G PD YN +++G+
Sbjct: 518 QMKNANMLLEAMLNLGVTPDDITYNILLEGH 548
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P ++N L+ LCK R+L + M + I P++ TY++LI +C L
Sbjct: 252 RGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENR-IYPDVFTYSVLIHGLCKEGRLD 310
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +L + G +P+ + ++ G
Sbjct: 311 VAEQLFDEMQQRGLRPNGITFTALIDG 337
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ LCK + ++ M +LG+ P+ +TY IL++ C + ++
Sbjct: 501 PGVITYNVLMNGLCKQGQMKNANMLLEAM-LNLGVTPDDITYNILLEGHCKNGKAEDLLK 559
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L ++ G D Y +++ Y
Sbjct: 560 L---RNEKGLIVDYAYYTSLVSEY 580
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
+L+ + S T++ F ++ G P + Y ILI+ C ++R+A + + +
Sbjct: 192 GYLLDKMINSNSPVTIWTFYSEI-LEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIR 250
Query: 74 DSGFKPDCFVYNTIMKG 90
G +P +NT++ G
Sbjct: 251 KRGLRPTTVSFNTLING 267
>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 882
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K +L+ + +M G PN+VTY ILI +N + A
Sbjct: 487 LSPDTFTYSVMINCLGKSGNLSAAHRLFCEM-VDQGCVPNIVTYNILIALQAKARNYQTA 545
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK--GY 91
++L + ++GFKPD Y+ +M+ GY
Sbjct: 546 LKLYRDMQNAGFKPDKVTYSIVMEVLGY 573
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ + L N +QM+ +G +P+ VTY LID L AM
Sbjct: 419 PNVVTYNRLIHSYGRANYLGEALNVFNQMQ-EMGCEPDRVTYCTLIDIHAKAGFLDVAMS 477
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + G PD F Y+ ++
Sbjct: 478 MYERMQEVGLSPDTFTYSVMI 498
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ K L + ++M+ +G+ P+ TY+++I+ + + NL A R
Sbjct: 454 PDRVTYCTLIDIHAKAGFLDVAMSMYERMQ-EVGLSPDTFTYSVMINCLGKSGNLSAAHR 512
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + D G P+ YN ++
Sbjct: 513 LFCEMVDQGCVPNIVTYNILI 533
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + R + ++QM G +PN+VTY LI + L EA+ +
Sbjct: 385 DGHTYTTMVGILGRAREFGAINKLLEQMVKD-GCQPNVVTYNRLIHSYGRANYLGEALNV 443
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + + G +PD Y T++
Sbjct: 444 FNQMQEMGCEPDRVTYCTLI 463
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN L+ K R+ T M+ + G KP+ VTY+I+++ + L EA
Sbjct: 524 PNIVTYNILIALQAKARNYQTALKLYRDMQNA-GFKPDKVTYSIVMEVLGYCGYLEEAEA 582
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 583 VFFEMKQNNWVPDEPVYGLLI 603
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P I YN L+ C+ ++ N D + A G+ PN VTYT LID C ++ +A
Sbjct: 696 LEPGIVCYNALIDGFCRSGDISRARNVFDSILAK-GLLPNCVTYTALIDGNCKNGDITDA 754
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + D G PD FVYN + G
Sbjct: 755 FDLYKDMLDRGIAPDAFVYNVLATG 779
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++TY+ ++ CK R ++MR N VTY ++I +C + + EA
Sbjct: 241 IPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRR-DCAMNEVTYNVMISGLCRSGAVEEA 299
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ D G PD F Y +M G
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNG 324
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++ LC+ ++ + F ++M G+ P+ TY L++ +C L+EA L+
Sbjct: 282 TYNVMISGLCRSGAVEEAFGFKEEM-VDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDE 340
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+S SG KP+ VY T++ G+
Sbjct: 341 MSCSGLKPNVVVYATLVDGF 360
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ LCK L +D+M S G+KPN+V Y L+D EA
Sbjct: 311 LSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCS-GLKPNVVVYATLVDGFMKEGKAAEA 369
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + +G +P+ +Y+ +++G
Sbjct: 370 FDILNEMISAGVQPNKIMYDNLIRG 394
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F YN L+K L + + Q++ G+ P+ TY+ LI C T+NL +A +
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKR-GLVPDEFTYSGLIHGYCKTRNLEKADQ 581
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG KP+ Y +++GY
Sbjct: 582 LLQQMLNSGLKPNADTYTDLLEGY 605
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ Y+ L+ LCK + +D+M A G++P +V Y LID C + ++ A
Sbjct: 661 LVPDLHIYSSLISGLCKMADMEKAVGLLDEM-AKEGLEPGIVCYNALIDGFCRSGDISRA 719
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ G P+C Y ++ G
Sbjct: 720 RNVFDSILAKGLLPNCVTYTALIDG 744
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ L++ + + +++MR S GI PN TY I+I+ +C +EA
Sbjct: 418 PDTFTYHPLMQGHFQHYDKDGAFELLNEMRNS-GILPNAYTYGIMINGLCQNGESKEAGN 476
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G KP+ F+Y ++ G+
Sbjct: 477 LLEEMISEGLKPNAFMYAPLIIGH 500
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD FTY+ L+ CK R+L + QM S G+KPN TYT L++ + +
Sbjct: 554 RGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNS-GLKPNADTYTDLLEGYFKSNDHE 612
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+ ++ ++ SG KPD +Y +++
Sbjct: 613 KVSSILQSMLGSGDKPDNHIYGIVIR 638
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TY ++ LC+ N +++M S G+KPN Y LI ++ A
Sbjct: 453 PNAYTYGIMINGLCQNGESKEAGNLLEEM-ISEGLKPNAFMYAPLIIGHSKEGHISLACE 511
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ + PD F YN+++KG
Sbjct: 512 SLENMTKANVLPDLFCYNSLIKG 534
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y +++ L + ++ + + ++ + G+ P+L Y+ LI +C ++ +A+
Sbjct: 628 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN-GLVPDLHIYSSLISGLCKMADMEKAVG 686
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +P YN ++ G+
Sbjct: 687 LLDEMAKEGLEPGIVCYNALIDGF 710
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ Y+ L++ LCK L +++M +G +P+ TY L+
Sbjct: 376 MISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEM-IKVGHRPDTFTYHPLMQGHFQHY 434
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L++ + +SG P+ + Y ++ G
Sbjct: 435 DKDGAFELLNEMRNSGILPNAYTYGIMING 464
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ TY L+ CK +T ++ M GI P+ Y +L +
Sbjct: 726 ILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDM-LDRGIAPDAFVYNVLATGCSDAA 784
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +A+ L + + G+ +++T+++G+
Sbjct: 785 DLEQALFLTEEMFNRGYA-HVSLFSTLVRGF 814
>gi|168014765|ref|XP_001759922.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689052|gb|EDQ75426.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+TYN L+ +S++T +D MR + I P+L+TY LI +C+ L +R
Sbjct: 531 PDIYTYNILINACSHKQSVSTALELMDIMRKA-KIAPDLITYNSLIKVMCHCGELDSGLR 589
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + D+G +PD +NT++
Sbjct: 590 VLGEMQDAGVQPDVTTFNTLL 610
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN + + + ++ +MR SL ++P++ TY ILI+ + +++ A+ L
Sbjct: 497 DTTAYNTAMNAFVQSKKFDEAWDIFTEMR-SLDVRPDIYTYNILINACSHKQSVSTALEL 555
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ + + PD YN+++K
Sbjct: 556 MDIMRKAKIAPDLITYNSLIK 576
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I+T+N L++ + + R ++ V M A +G++P+ T+T L+D + L +A L+
Sbjct: 303 IYTFNALLRAVVEGRGVSHALRVVRSMEA-VGVRPDTHTFTTLLDGYSRSGKLDKAEALL 361
Query: 70 SALSDS--GFKPDCFVYNTIMKG 90
+ + DS +P + YN ++K
Sbjct: 362 AKMEDSKPNQRPSIYTYNILIKA 384
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN--- 61
++ PD+ TYN L+K +C C L + + +M+ + G++P++ T+ L+ + K
Sbjct: 563 KIAPDLITYNSLIKVMCHCGELDSGLRVLGEMQDA-GVQPDVTTFNTLLASASYHKRKGL 621
Query: 62 ---LREAMRLVSALSDS 75
L E MRL + D+
Sbjct: 622 AEYLVEEMRLCNVAPDT 638
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 29 VYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS-GFKPDCFVYNTI 87
VY F+++ G++ N ++Y + +C T L EA+ L+S LS S G K + +YNT+
Sbjct: 8 VYRFMERN----GLRMNEISYGCFLRTLCRTGQLDEALELLSVLSRSKGVKANLVMYNTV 63
Query: 88 MKG 90
+ G
Sbjct: 64 LNG 66
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 35 QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+MR +LG++ ++ T+ L+ V + + A+R+V ++ G +PD + T++ GY
Sbjct: 293 EMR-NLGLRLSIYTFNALLRAVVEGRGVSHALRVVRSMEAVGVRPDTHTFTTLLDGY 348
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+P PD FTYN LV +C+ + V QM + GI+PN+VTYT+L+D
Sbjct: 201 LRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERA-GIRPNVVTYTMLVDG 259
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
CN + EA+ ++ + + G Y +++ G
Sbjct: 260 FCNASRVEEAVCVLERMKEKGVSATEATYRSLVHG 294
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ T+ L+ LC L +N +M + G++PN+ TY +LI +C+ ++ +A
Sbjct: 491 LMPDVITFTSLIDGLCHTHQLDDAFNCFSEM-SEWGVRPNVQTYNVLIHGLCSAGHVSKA 549
Query: 66 MRLVSALSDSGFKPDCFVYN 85
+ L++ + G PD + +N
Sbjct: 550 IELLNKMKMDGITPDAYSFN 569
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L+ K ++ F+ +M G+ P+++T+T LID +C+T L +A
Sbjct: 458 PNLVTFNTLINGYLKLGNVHDAKAFL-KMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFN 516
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
S +S+ G +P+ YN ++ G
Sbjct: 517 CFSEMSEWGVRPNVQTYNVLIHG 539
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC ++ +++M+ GI P+ ++ I + C + + +A +
Sbjct: 528 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMD-GITPDAYSFNAPILSFCRMRKIEKAQK 586
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +S G PD + YN ++K
Sbjct: 587 LFNDMSRYGVSPDSYTYNALIKA 609
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+P P YN ++ + ++ Y QM A G +P+ TY L+ V
Sbjct: 167 VFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPAD-GCRPDCFTYNTLVHGV 225
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + EA+RLV + +G +P+ Y ++ G+
Sbjct: 226 CRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGF 260
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++K +C+ ++ + QM S G+ ++ +Y I+ID + A+ + +
Sbjct: 393 YIMIIKSFLRCKDISKANKYFSQM-VSDGLLSSVESYNIVIDCFAKAGEVERALETIKVM 451
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+SGF P+ +NT++ GY
Sbjct: 452 QESGFSPNLVTFNTLINGY 470
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 3 FKQLPPD-----IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
F Q+ D + +YN ++ C K + + M+ S G PNLVT+ LI+
Sbjct: 413 FSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQES-GFSPNLVTFNTLINGYL 471
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +A + + + G PD + +++ G
Sbjct: 472 KLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDG 504
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +++N + C+ R + + M + G+ P+ TY LI +C+ + + EA
Sbjct: 561 ITPDAYSFNAPILSFCRMRKIEKAQKLFNDM-SRYGVSPDSYTYNALIKALCDERRVDEA 619
Query: 66 MRLVSAL 72
++ A+
Sbjct: 620 KEIILAM 626
>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
Length = 556
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TYN L+ CK + + M G+ P ++TY ILI+ C +K +REAM
Sbjct: 431 PPNVITYNILIDAFCKIQDIDMGIELFKLMCGK-GLTPTVLTYNILINGYCKSKRIREAM 489
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+S + PD YN++ G
Sbjct: 490 NLLSVMQSKNLAPDSITYNSLFDG 513
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TY L++ C+ V + +M + I PN+ T+ +LID C + EA
Sbjct: 255 IDPDILTYTSLIRGFCRTGQWGEVKQLMCEM-VNKNINPNVYTFNVLIDAFCRKGKMIEA 313
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G +PD +NT++ G+
Sbjct: 314 QGMFNLMVKRGQQPDIVTFNTLISGH 339
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+++T+N L+ C+ + + M G +P++VT+ LI C
Sbjct: 285 MVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLM-VKRGQQPDIVTFNTLISGHCLHG 343
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ EA +L + + G PD + Y ++ GY
Sbjct: 344 NVLEARKLFDTVFERGILPDVWSYTILIIGY 374
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + DI Y+ L+ LCK ++ + + G PN++TY ILID C +++
Sbjct: 393 KNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINND-GPPPNVITYNILIDAFCKIQDID 451
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + G P YN ++ GY
Sbjct: 452 MGIELFKLMCGKGLTPTVLTYNILINGY 479
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P + TYN L+ CK + + N + M+ S + P+ +TY L D +C + +
Sbjct: 463 KGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQ-SKNLAPDSITYNSLFDGLCKSGRIS 521
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + G D YN ++ +
Sbjct: 522 DAWELFKVMHVGGPPVDVATYNVLLDAF 549
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y L+ LCK + + +M + +KPN+V Y ++ID+ C + +A L
Sbjct: 188 DEVCYGTLINGLCKIGRSIDAFQLLQEMEGQV-VKPNIVIYNMIIDSFCKDELTCKARDL 246
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ D G PD Y ++++G+
Sbjct: 247 YLKIVDMGIDPDILTYTSLIRGF 269
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 8 PDIFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
P+I YN ++ CK C++ VD +GI P+++TYT LI C T
Sbjct: 222 PNIVIYNMIIDSFCKDELTCKARDLYLKIVD-----MGIDPDILTYTSLIRGFCRTGQWG 276
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E +L+ + + P+ + +N ++ +
Sbjct: 277 EVKQLMCEMVNKNINPNVYTFNVLIDAF 304
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N L+ C ++ D + GI P++ +YTILI C K + EA+
Sbjct: 327 PDIVTFNTLISGHCLHGNVLEARKLFDTVFER-GILPDVWSYTILIIGYCKCKRIDEAVS 385
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + D +Y++++ G
Sbjct: 386 LFNEMRCKNMVLDIVLYSSLIDG 408
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI Q P + +N ++ + K + + + QM G+ P++ T +I I+ C+
Sbjct: 75 LINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFK-GVTPSIFTLSIWINCYCHLG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + G++P+ T+MKG
Sbjct: 134 EMGFAFSVLGIVLKRGYQPNNITLTTVMKG 163
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P I TYN L++ C R L+ + D+M PN++TY+ILID +C + ++EA
Sbjct: 345 LTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCA--PNVITYSILIDGLCKVRRMKEA 402
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G+ P Y ++ G+
Sbjct: 403 AKTLEDMKAHGYTPTVVTYGGLINGF 428
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ CKC L + F ++M+ + G PN V + LID +C + + +R
Sbjct: 416 PTVVTYGGLINGFCKCGELKSALLFFEKMKLA-GCAPNTVIFNTLIDGLCKAERANDGLR 474
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G KPD YN ++ G
Sbjct: 475 LLCHMHAEGCKPDVITYNCLISG 497
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK R + ++ M+A G P +VTY LI+ C L+ A+
Sbjct: 381 PNVITYSILIDGLCKVRRMKEAAKTLEDMKAH-GYTPTVVTYGGLINGFCKCGELKSALL 439
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +G P+ ++NT++ G
Sbjct: 440 FFEKMKLAGCAPNTVIFNTLIDG 462
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ CK + + ++ + G +PN+ TY+I+I+ C + EA
Sbjct: 206 PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA-GYEPNVFTYSIIINCYCKLDKVEEAWE 264
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +S P+ +NT++ G+
Sbjct: 265 VFMKMIESNCVPNAVTFNTLIAGF 288
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FTY+ ++ C CK + + +M S + PN VT+ LI C L +A++
Sbjct: 241 PNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCV-PNAVTFNTLIAGFCKAGMLEDAIK 299
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + G K YNT++
Sbjct: 300 LFAEMEKIGCKATIVTYNTLI 320
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK-NLREAM 66
P+ T+N L+ CK L +M +G K +VTY LID++C + + A+
Sbjct: 276 PNAVTFNTLIAGFCKAGMLEDAIKLFAEME-KIGCKATIVTYNTLIDSLCKKRGGVYTAV 334
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L + L +G P YN++++G+
Sbjct: 335 DLFNKLEGAGLTPTIVTYNSLIQGF 359
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y+ L+ L + + M S P+++TY +L+D C EA
Sbjct: 174 PDLESYHILLSALSDSGRMAEAHALFSAMTCS----PDIMTYNVLMDGYCKIGQTYEAQS 229
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G++P+ F Y+ I+ Y
Sbjct: 230 LMKEILKAGYEPNVFTYSIIINCY 253
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRA--SLGIKPNLVTYTILIDNVCNTKNLREAMR 67
I TYN L+ LCK R VY VD G+ P +VTY LI C+ + L EAM+
Sbjct: 313 IVTYNTLIDSLCKKRG--GVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQ 370
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + P+ Y+ ++ G
Sbjct: 371 YFDEM-EGKCAPNVITYSILIDG 392
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L++ CK + + M++S G+ PN T L+ +C + A++
Sbjct: 30 PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSS-GLLPNASTMNTLLLGLCEIGQMSSALK 88
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + F P +N +++G+
Sbjct: 89 LFREMQAGPFLPTSASHNILLRGF 112
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N L+ LCK + M A G KP+++TY LI +C+ + +A R
Sbjct: 451 PNTVIFNTLIDGLCKAERANDGLRLLCHMHAE-GCKPDVITYNCLISGLCSANRVEDAQR 509
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ + P+ +N +++G
Sbjct: 510 LFDGMACA---PNVTTFNFLIRG 529
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L R ++ A L PN TY +LI C + +A+ + S +
Sbjct: 1 NALLSGLVSARKHDQALRLFKEVLAGL-FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMK 59
Query: 74 DSGFKPDCFVYNTIMKG 90
SG P+ NT++ G
Sbjct: 60 SSGLLPNASTMNTLLLG 76
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD FTY+ +++ LCK L + Q+R S G+K N++TY+++ID C + +A+
Sbjct: 70 PPDDFTYSIVLRGLCKAGELDKAKELLGQLRES-GVKLNVITYSVVIDGCCKASRVDDAL 128
Query: 67 RLVSALSD-SGFKPDCFVYNTIMKG 90
+ +S G PD +N+++KG
Sbjct: 129 EIFKTMSSGGGCVPDVVTFNSLLKG 153
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TYN +V LCK + L V++M A+ G+ P++VTY+ L+D +C L A
Sbjct: 336 PPNLETYNIMVDNLCKAKQLDEAQELVNEM-ANYGLSPDVVTYSALVDGLCKLGKLDRAC 394
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ +S G PD F +I+
Sbjct: 395 DLLEEMSKEGVFPDSFTDASIL 416
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA--SLGIKPNLVTYTILIDNVCN 58
+I + PP +N L+ +CK + L +M++ PNL TY I++DN+C
Sbjct: 292 MISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCK 351
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K L EA LV+ +++ G PD Y+ ++ G
Sbjct: 352 AKQLDEAQELVNEMANYGLSPDVVTYSALVDG 383
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+K LC ++ + + M A G +PN+++Y+ L+D +C L EA R
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYM-AKAGCEPNVISYSTLLDGLCKAGRLDEACR 200
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + PD Y + + G
Sbjct: 201 LWEEMVEKSCVPDLVAYTSFVTG 223
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK + F+ +M A+ P++ +YTI+I +C + A
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA-KCTPDVFSYTIIITALCRSGQAAGAHA 500
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G PD +Y++++ G
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDG 523
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT ++ L K + + ++ M+A G P+LVTY L+D +C + EA+
Sbjct: 407 PDSFTDASILNALSKAGKVDYALSHLETMKAR-GSTPDLVTYNTLLDGLCKAGRIDEAIT 465
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + + PD F Y I+
Sbjct: 466 FLAKMVAAKCTPDVFSYTIII 486
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+FTYN + L K + Y QM+ G P+ TY+I++ +C L +A L+
Sbjct: 38 VFTYNCFLDALAKANAGQLAYEKFQQMQRR-GYPPDDFTYSIVLRGLCKAGELDKAKELL 96
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
L +SG K + Y+ ++ G
Sbjct: 97 GQLRESGVKLNVITYSVVIDG 117
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TY+ ++ CK + M + G P++VT+ L+ +C+ + + EA L
Sbjct: 107 NVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVL 166
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ +G +P+ Y+T++ G
Sbjct: 167 FEYMAKAGCEPNVISYSTLLDG 188
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 33/122 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------------ 36
++ + PD+F+Y ++ LC+ + +M
Sbjct: 470 MVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL 529
Query: 37 --------RASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ SL KP+ V + +++D +C +A +V ++D+GF D F Y +++
Sbjct: 530 EDLALELLKTSL-CKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVV 588
Query: 89 KG 90
G
Sbjct: 589 SG 590
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y+ L+ LCK L ++M + P+LV YT + +C + EA
Sbjct: 177 PNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV-PDLVAYTSFVTGLCKANRVAEACD 235
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ G K D ++T++
Sbjct: 236 CCRKMVTKGSKADAVAFSTVI 256
>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 556
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + + TYN L+ LC+ + V ++ +G+ PN+VTY ILI+ C+ +
Sbjct: 292 KGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVN-KVGLSPNIVTYNILINGFCDVGKMD 350
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL + L SG P YNT++ GY
Sbjct: 351 TAVRLFNQLKSSGLSPTLVTYNTLIAGY 378
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ + YN L+ C + + +MR GI ++TY ILI +C K EA++
Sbjct: 261 PNAYAYNCLISEYCNDGMVDKAFKVFAEMREK-GIACGVMTYNILIGGLCRGKKFGEAVK 319
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV ++ G P+ YN ++ G+
Sbjct: 320 LVHKVNKVGLSPNIVTYNILINGF 343
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I TYN L+ C + T +Q+++S G+ P LVTY LI +NL A
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSS-GLSPTLVTYNTLIAGYSKVENLAGA 387
Query: 66 MRLVSALSD 74
+ LV + +
Sbjct: 388 LDLVKEMEE 396
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TYN L+ K +L + V +M I + VTYTILID +A
Sbjct: 364 LSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC-IARSKVTYTILIDAFARLNYTDKA 422
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ S + SG PD + Y+ ++ G
Sbjct: 423 CEMHSLMEKSGLVPDVYTYSVLIHG 447
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y L+ CK + N +M LG+ PN TY++L++ RE
Sbjct: 189 LSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMD-RLGLVPNQHTYSVLMNGFFKQGLQREG 247
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ ++ SG P+ + YN ++ Y
Sbjct: 248 FQMYENMNRSGIVPNAYAYNCLISEY 273
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L P+ YN ++ CK S +++M S G+ PN+ ++ + +C + +E
Sbjct: 468 HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHS-GMVPNVASFCSTMGLLCRDEKWKE 526
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A L+ + +SG KP +Y + K
Sbjct: 527 AELLLGQMINSGLKPSVSLYKMVHK 551
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+ +++ ++ C+ V+ + + G+ PN+V YT LID C ++ A L
Sbjct: 157 NAYSFGIMITGCCEAGYFVRVFRLLAVLE-EFGLSPNVVIYTTLIDGCCKNGDVMLAKNL 215
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y+ +M G+
Sbjct: 216 FCKMDRLGLVPNQHTYSVLMNGF 238
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 6 LPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L PD++TY+ L+ C + + + + +M ++PN V Y +I C +
Sbjct: 434 LVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMH----LQPNSVIYNTMIHGYCKEGSS 489
Query: 63 REAMRLVSALSDSGFKPD 80
A+RL++ + SG P+
Sbjct: 490 YRALRLLNEMVHSGMVPN 507
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ K + + M S GI PN Y LI CN + +A
Sbjct: 224 LVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRS-GIVPNAYAYNCLISEYCNDGMVDKA 282
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + + + G YN ++ G
Sbjct: 283 FKVFAEMREKGIACGVMTYNILIGG 307
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV C CK + Y++ +M+ G+ N+VT++ +D C +REAM+
Sbjct: 262 PDVVTYNALVNCFCKFGRMERAYSYFAEMKRE-GVMANVVTFSTFVDAFCKNGMVREAMK 320
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G KP+ Y ++ G
Sbjct: 321 LFAQMRMKGMKPNEVTYTCLVDG 343
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F+QLP P++FT+N ++ LCK L + +M+A +G P++VTY LID
Sbjct: 185 LFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKA-IGCSPDVVTYNSLIDGYGKCG 243
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L E +LV + G +PD YN ++ +
Sbjct: 244 ELEEVEKLVGEMRGCGCRPDVVTYNALVNCF 274
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP+ T N ++ CL + RS + +Q+ A PN+ T+ I+ID +C +L E
Sbjct: 158 RVPPNTRTCNHILLCLARERSSELAWRLFEQLPA-----PNVFTFNIMIDFLCKEGDLAE 212
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L++ + G PD YN+++ GY
Sbjct: 213 ARALLARMKAIGCSPDVVTYNSLIDGY 239
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TY LV LCK S+ + ++M LG++PN+ YT L+D +C L +A+
Sbjct: 507 PNIVTYCALVDGLCKAGSIDEAISHFNKM-VDLGLEPNVQAYTALVDGLCKNGRLDKAVL 565
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G D V ++M G+
Sbjct: 566 LLDEMIDKGMSLDNVVCTSLMDGH 589
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ Y L+ LC + L + +++M G+KPN V YT ++D +
Sbjct: 433 KGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMD-ECGLKPNNVIYTNIMDACFKARKES 491
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ + DSGF+P+ Y ++ G
Sbjct: 492 EAIALLQKMMDSGFRPNIVTYCALVDG 518
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TY LV CK L ++M G+ N+VTYT+L+D +C +
Sbjct: 328 KGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEM-VQQGVPLNVVTYTVLVDGLCKEGKVA 386
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + +G + + +Y T++ G+
Sbjct: 387 EAEDVFRLMERAGIRANELLYTTLIHGH 414
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ Y ++ K R + + +M S G +PN+VTY L+D +C ++ EA
Sbjct: 470 LKPNNVIYTNIMDACFKARKESEAIALLQKMMDS-GFRPNIVTYCALVDGLCKAGSIDEA 528
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + D G +P+ Y ++ G
Sbjct: 529 ISHFNKMVDLGLEPNVQAYTALVDG 553
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +P ++ TY LV LCK + + M + GI+ N + YT LI K
Sbjct: 360 MVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERA-GIRANELLYTTLIHGHFVYK 418
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A+ L+S + D G + D +Y ++ G
Sbjct: 419 NSERALSLLSEMKDKGMELDVSLYGALIWG 448
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
G++ +L YT + CN ++EA ++S + ++G PD VYN ++
Sbjct: 609 GLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLI 656
>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD F+Y ++ CK + ++ ++ +M GI+P++ TYT+LID+ C N+ A
Sbjct: 354 LIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKR-GIRPSVATYTLLIDSCCKPGNMEMA 412
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YNT+M GY
Sbjct: 413 EYLFQRMITEGLVPDVVSYNTLMNGY 438
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD+ +YN L+ K L + + MR S G+ P+LVTY ILI +
Sbjct: 419 MITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMR-SAGVSPDLVTYNILIHGLIKRG 477
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ L+ GF PD + I+ G+
Sbjct: 478 LVNEAKDILDELTRRGFSPDVVTFTNIIGGF 508
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ L K + + +D++ G P++VT+T +I N N EA
Sbjct: 461 PDLVTYNILIHGLIKRGLVNEAKDILDEL-TRRGFSPDVVTFTNIIGGFSNKGNFEEAFL 519
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +S+ +PD + ++ GY
Sbjct: 520 LFFYMSEHHLEPDVVTCSALLNGY 543
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ PN+ + I +C N+ +A ++ + + G PDCF Y T+M GY
Sbjct: 319 LSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGY 368
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD+ T + L+ C+ R + +M + G+K +++ Y LI C+ N+ +
Sbjct: 528 HLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDA-GLKADVILYNSLIHGFCSLGNIDD 586
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A LVS + + G P+ ++ ++ GY
Sbjct: 587 ACHLVSMMIEHGIMPNNITHHALVLGY 613
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
+ + C ++ T + + +M+ LGIKP++V YTI+ID++C L+EA ++ ++
Sbjct: 225 SLFISGYCSQGNIDTGWKLLMEMK-YLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMT 283
Query: 74 DSGFKPDCFVYNTIMKGY 91
G D ++++ GY
Sbjct: 284 QMGVFLDSVSVSSVVDGY 301
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I N L+K L + L ++F+ +M+ S G+ N ++ I C+ N+ +
Sbjct: 184 PLIGVCNSLLKALLESEQLNLAWDFLKEMK-SQGLGLNASIISLFISGYCSQGNIDTGWK 242
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G KPD Y ++
Sbjct: 243 LLMEMKYLGIKPDVVAYTIVI 263
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K PDIFTYN LV C+ L + V++M S G+ P+++TY L++ +C T
Sbjct: 532 ITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRM-WSQGMTPDVITYNTLLNGLCKTAK 590
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMK 89
E M + A+++ G P+ YNTI++
Sbjct: 591 SEEVMEIFKAMTEKGCAPNIITYNTIIE 618
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ LCK V M G PN++TY +I+++CN+K +
Sbjct: 569 QGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEK-GCAPNIITYNTIIESLCNSKKVN 627
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L+ + G PD + T++ G+
Sbjct: 628 EAVDLLGEMKSKGLTPDVVSFGTLITGF 655
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P I YN L+K LC+ + +++M A G KP++ TY ++I+ +C L
Sbjct: 464 KGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM-AEKGCKPDIWTYNLIINGLCKMGCLS 522
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ G PD F YNT++ GY
Sbjct: 523 DANHLIGDAITKGCIPDIFTYNTLVDGY 550
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI+TYN ++ LCK L+ + + + G P++ TY L+D C L
Sbjct: 499 KGCKPDIWTYNLIINGLCKMGCLSDANHLIGDA-ITKGCIPDIFTYNTLVDGYCRQLKLD 557
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ LV+ + G PD YNT++ G
Sbjct: 558 SAIELVNRMWSQGMTPDVITYNTLLNG 584
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ T+N LV LCK + D++ G+ PNL T+ I I +C +L A
Sbjct: 291 LCPDVTTFNKLVHALCKKGFVLESERLFDKV-LKRGVCPNLFTFNIFIQGLCKEGSLDRA 349
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+RL+ +S G +PD YNT++ G
Sbjct: 350 VRLLGCVSREGLRPDVVTYNTVICG 374
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FT+N ++ LCK SL + + + G++P++VTY +I +C + EA
Sbjct: 328 PNLFTFNIFIQGLCKEGSLDRAVRLLGCV-SREGLRPDVVTYNTVICGLCRKSRVVEAEE 386
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + GF+P+ F YN+I+ GY
Sbjct: 387 CLHKMVNGGFEPNDFTYNSIIDGY 410
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ ++ L+ CK L Y M + TY I+I N++
Sbjct: 639 KGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMK 698
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL S + +G PD + Y ++ G+
Sbjct: 699 MALRLFSEMKKNGCDPDNYTYRVLIDGF 726
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+FK PD FTY LV C+ F D + G++P+++ Y LI +C
Sbjct: 427 VFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGL--GKGLRPSIIVYNTLIKGLCQQG 484
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A++L++ +++ G KPD + YN I+ G
Sbjct: 485 LILPALQLMNEMAEKGCKPDIWTYNLIING 514
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+ TYN ++ LC+ + + +M + G +PN TY +ID C +
Sbjct: 359 EGLRPDVVTYNTVICGLCRKSRVVEAEECLHKM-VNGGFEPNDFTYNSIIDGYCKKGMVV 417
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A R++ GFKPD F Y +++ G+
Sbjct: 418 DANRILKDAVFKGFKPDEFTYCSLVNGF 445
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P+ FTYN ++ CK + + N + + G KP+ TY L++ C + +A
Sbjct: 396 FEPNDFTYNSIIDGYCK-KGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQA 454
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + G +P VYNT++KG
Sbjct: 455 MAVFKDGLGKGLRPSIIVYNTLIKG 479
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++ + ++ +M+ + G P+ TY +LID C T N+ + + +
Sbjct: 683 TYNIIISAFSEQLNMKMALRLFSEMKKN-GCDPDNYTYRVLIDGFCKTGNVNQGYKFLLE 741
Query: 72 LSDSGFKPDCFVYNTIM 88
+ GF P + ++
Sbjct: 742 NIEKGFIPSLTTFGRVL 758
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY L+ CK ++ Y F+ + G P+L T+ +++ +C ++EA+
Sbjct: 714 PDNYTYRVLIDGFCKTGNVNQGYKFLLE-NIEKGFIPSLTTFGRVLNCLCVEHKVQEAVG 772
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + PD NTI +
Sbjct: 773 IIHLMVQKDIVPD--TVNTIFEA 793
>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
Length = 541
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++FTYN +++ LC+ + YN +++M A+ G KP++ +Y L++ C K +
Sbjct: 316 RSLTPNVFTYNAVIRLLCELGEVDEAYNILNEM-ATYGEKPDVWSYNTLLNTHCKLKEVN 374
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A+RL+S + + P+ YN I+K
Sbjct: 375 KALRLISRMDEGLCLPNRHSYNMILK 400
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ YN L+ LC+ + + M+ S G+ P+ TY + + C +K
Sbjct: 242 MIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRSRGLAPDAATYGPFLRSACASK 301
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ R A+R++ + P+ F YN +++
Sbjct: 302 DARAALRVLDRMRARSLTPNVFTYNAVIR 330
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+++YN L+ CK + + + +M L + PN +Y +++ + + A+
Sbjct: 355 PDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCL-PNRHSYNMILKMLIAIGRVDRAIE 413
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + GF P Y ++ G
Sbjct: 414 VWDGMEKRGFHPGAATYAVMIHG 436
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + TYN LV CK + V +M GIKP+ VTYTILID + N+
Sbjct: 367 RGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEER-GIKPSKVTYTILIDTFARSDNME 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L S++ + G PD Y+ ++ G+
Sbjct: 426 KAIQLRSSMEELGLTPDVHTYSVLIHGF 453
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I TYN L+ LC+ +DQM++ GI PNL+TY LID C + L +A+ L
Sbjct: 302 NIVTYNTLIGGLCREMKANEANEVMDQMKSD-GINPNLITYNTLIDGFCGVRKLGKALSL 360
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L G P YN ++ G+
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGF 383
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ LCK + D+MR G+ N+VTY LI +C EA
Sbjct: 266 PNLHTYNCVMNQLCKDGRTKDAFKVFDEMRER-GVSCNIVTYNTLIGGLCREMKANEANE 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P+ YNT++ G+
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGF 348
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C R L + ++ S G+ P+LVTY IL+ C + A +
Sbjct: 336 PNLITYNTLIDGFCGVRKLGKALSLCRDLK-SRGLSPSLVTYNILVSGFCKKGDTSGAGK 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + + G KP Y ++ +
Sbjct: 395 VVKEMEERGIKPSKVTYTILIDTF 418
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++++ ++K C+ + ++ + ++R G PN+V YT LID C + +A L
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELR-EFGFSPNVVIYTTLIDGCCKKGEIEKAKDL 220
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G + + Y ++ G
Sbjct: 221 FFEMGKFGLVANEWTYTVLIHG 242
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+ P+ YN +V CK S +M + PN+ +Y +I+ +C +
Sbjct: 469 MVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEK-ELPPNVASYRYMIEVLCKER 527
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA LV + DSG P + N I +
Sbjct: 528 KSKEAEGLVEKMIDSGIGPSDSILNLISRA 557
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY L+ L K + ++M+ G+ PNL TY +++ +C ++A ++
Sbjct: 234 WTYTVLIHGLFKNGIKKQGFEMYEKMQEH-GVFPNLHTYNCVMNQLCKDGRTKDAFKVFD 292
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G + YNT++ G
Sbjct: 293 EMRERGVSCNIVTYNTLIGG 312
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + + TYN L+ LC+ + V ++ +G+ PN+VTY ILI+ C+ +
Sbjct: 292 KGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVN-KVGLSPNIVTYNILINGFCDVGKMD 350
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL + L SG P YNT++ GY
Sbjct: 351 TAVRLFNQLKSSGLSPTLVTYNTLIAGY 378
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TY L+ + M S G+ P++ TY++LI +C N++EA
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKS-GLVPDVYTYSVLIHGLCVHGNMKEA 457
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +L + +P+ +YNT++ GY
Sbjct: 458 SKLFKSLGEMHLQPNSVIYNTMIHGY 483
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ + YN L+ C + + +MR GI ++TY ILI +C K EA++
Sbjct: 261 PNAYAYNCLISEYCNGGMVDKAFKVFAEMREK-GIACGVMTYNILIGGLCRGKKFGEAVK 319
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV ++ G P+ YN ++ G+
Sbjct: 320 LVHKVNKVGLSPNIVTYNILINGF 343
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I TYN L+ C + T +Q+++S G+ P LVTY LI +NL A
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSS-GLSPTLVTYNTLIAGYSKVENLAGA 387
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ LV + + P Y ++ +
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAF 413
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +++ ++K C+ + + M G+ PN+V YT LID C N+ A L
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLL-AMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNL 215
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y+ +M G+
Sbjct: 216 FCKMDRLGLVPNPHTYSVLMNGF 238
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L P+ YN ++ CK S +++M S G+ PN+ ++ I +C + +E
Sbjct: 468 HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHS-GMVPNVASFCSTIGLLCRDEKWKE 526
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A L+ + +SG KP +Y + K
Sbjct: 527 AELLLGQMINSGLKPSVSLYKMVHK 551
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y L+ CK ++ N +M LG+ PN TY++L++ RE
Sbjct: 189 LSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMD-RLGLVPNPHTYSVLMNGFFKQGLQREG 247
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + SG P+ + YN ++ Y
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEY 273
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ K + + M+ S GI PN Y LI CN + +A
Sbjct: 224 LVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRS-GIVPNAYAYNCLISEYCNGGMVDKA 282
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + + + G YN ++ G
Sbjct: 283 FKVFAEMREKGIACGVMTYNILIGG 307
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK S++ + ++MR LG+ PN+ YT LID C +L +AM
Sbjct: 513 PNVVTYCALIDGLCKAGSISEAISHFNKMR-ELGLDPNVQAYTALIDGFCKIGSLNKAMH 571
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + D G D VY +++ GY
Sbjct: 572 LMNEMIDKGMSLDKVVYTSLIDGY 595
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY LV CK L +D+M G+ PN+VTYT+++D +C + EA
Sbjct: 338 PNEFTYTSLVDGTCKAGRLDDAIVLLDEM-VHQGLVPNVVTYTVMVDGLCKEGKVAEADN 396
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++S + G K + +Y T++ G+
Sbjct: 397 VLSLMERGGVKANELLYTTLIHGH 420
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F LP P++FT+N ++ LCK L +M+A +G P++VTY LID
Sbjct: 191 LFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKA-MGCSPDVVTYNSLIDGYGKCG 249
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L E +LVS + SG D YN ++ +
Sbjct: 250 DLEEVEQLVSEMRKSGCAADVVTYNALINCF 280
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+ C K + Y++ +M+ G+ N+VT++ +D C ++EAM+L
Sbjct: 269 DVVTYNALINCFSKFGRMEKAYSYFGEMKRQ-GVVANVVTFSTFVDAFCKEGLVQEAMKL 327
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ F Y +++ G
Sbjct: 328 FAQMRVRGMMPNEFTYTSLVDG 349
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ Y L+ LCK + + + + +M A G++PN V YT ++D +
Sbjct: 439 KGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKM-AGCGLRPNTVIYTTIMDALFKAGKES 497
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ + DSGF+P+ Y ++ G
Sbjct: 498 EAVALLHKILDSGFQPNVVTYCALIDG 524
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y L+ CK SL + +++M G+ + V YT LID NL++A
Sbjct: 546 LDPNVQAYTALIDGFCKIGSLNKAMHLMNEM-IDKGMSLDKVVYTSLIDGYMKQANLQDA 604
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + +SG + D + Y + G+
Sbjct: 605 FALKTKMIESGLQLDLYCYTCFISGF 630
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ T++ V CK + QMR G+ PN TYT L+D C L +A+ L
Sbjct: 304 NVVTFSTFVDAFCKEGLVQEAMKLFAQMRVR-GMMPNEFTYTSLVDGTCKAGRLDDAIVL 362
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ Y ++ G
Sbjct: 363 LDEMVHQGLVPNVVTYTVMVDG 384
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP+ T N ++ L + R V D + PN+ T+ I+ID +C L E
Sbjct: 164 RVPPNTRTCNHILLRLARNRQGGLVRRLFDLLPV-----PNVFTFNIVIDFLCKEGELVE 218
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + G PD YN+++ GY
Sbjct: 219 ARALFVRMKAMGCSPDVVTYNSLIDGY 245
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TY +V LCK + N + M G+K N + YT LI
Sbjct: 366 MVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERG-GVKANELLYTTLIHGHFMNN 424
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A+ L++ + + G + D +Y T++ G
Sbjct: 425 NSERALDLLNQMKNKGMELDVSLYGTLIWG 454
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ Y ++ L K + + ++ S G +PN+VTY LID +C ++ EA
Sbjct: 476 LRPNTVIYTTIMDALFKAGKESEAVALLHKILDS-GFQPNVVTYCALIDGLCKAGSISEA 534
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + G P+ Y ++ G+
Sbjct: 535 ISHFNKMRELGLDPNVQAYTALIDGF 560
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + D Y L+ K +L + +M S G++ +L YT I CN
Sbjct: 576 MIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIES-GLQLDLYCYTCFISGFCNMN 634
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++S + +G PD VYN +++ Y
Sbjct: 635 MMQEARGVLSEMIGTGITPDKTVYNCLIRKY 665
>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
Length = 466
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PP + TY +++ CK R+ VY +D M S G PN++TYT+++ ++ +
Sbjct: 214 RGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSM-GSQGCHPNVITYTMIMTSLAKCERFE 272
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ + + SG KPD YN+++
Sbjct: 273 EALSVSHRMKSSGCKPDTLFYNSLI 297
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+PPD +T+N V C R + +++M+ G P+++TYT +++ C +N R
Sbjct: 180 HIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRR-GFPPSVITYTTVLEAYCKQRNFRR 238
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++ ++ G P+ Y IM
Sbjct: 239 VYEVLDSMGSQGCHPNVITYTMIM 262
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ LCK R + + S I P+ T+ I + C+ + + EAM +
Sbjct: 153 TMNVLLDVLCKERKIEVAREVFAVL--SPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEE 210
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF P Y T+++ Y
Sbjct: 211 MKRRGFPPSVITYTTVLEAY 230
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TYN L+ C + + ++M I PN+ T+ IL+D C +
Sbjct: 238 MVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFE-NINPNVYTFNILVDGFCKER 296
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+EA +++ + G KPD F YN++M Y
Sbjct: 297 RLKEAKNVLAMMMKQGIKPDVFTYNSLMDRY 327
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+IF+ + P+++T+N LV CK R L N + M GIKP++ TY L+D C K
Sbjct: 273 MIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQ-GIKPDVFTYNSLMDRYCLVK 331
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + +S G P+ Y+ ++ G+
Sbjct: 332 EVNKAKHIFNTISQRGVNPNIHSYSIMIHGF 362
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK ++ VD+M G+ + +TY ++D +C + +A+
Sbjct: 385 PDVVTYNSLIDGLCKLGKISYALKLVDEMHDR-GVPHDKITYNSILDALCKNHQVDKAIA 443
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + D G +PD Y T++ G
Sbjct: 444 LLTKMKDEGIQPDICTYTTLVDG 466
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ KQ + PD+FTYN L+ C + + + + + + G+ PN+ +Y+I+I C
Sbjct: 307 MMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTI-SQRGVNPNIHSYSIMIHGFCKI 365
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K + EAM L + + PD YN+++ G
Sbjct: 366 KKVDEAMNLFKEMHCNNIIPDVVTYNSLIDG 396
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I +Y+ ++ CK + + N +M + I P++VTY LID +C + A++
Sbjct: 350 PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCN-NIIPDVVTYNSLIDGLCKLGKISYALK 408
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
LV + D G D YN+I+
Sbjct: 409 LVDEMHDRGVPHDKITYNSIL 429
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ LCK + + ++ L ++PN+V Y +ID++C K + EA L S
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKL-VQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 237
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G PD YN ++ G+
Sbjct: 238 MVSKGISPDVVTYNALISGF 257
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +P D TYN ++ LCK + + +M+ GI+P++ TYT L+D +C L
Sbjct: 416 RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDE-GIQPDICTYTTLVDGLCKNGRLE 474
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + L G+ D +Y +++G+
Sbjct: 475 DARIVFEDLLVKGYILDVNIYTAMIQGF 502
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T L+K LC + F D++ A LG N V+Y LI+ +C A++
Sbjct: 140 PNVITLTTLIKGLCLKGQIHQALQFHDKVVA-LGFHLNKVSYGTLINGLCKVGQTSAALQ 198
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +P+ +YNTI+
Sbjct: 199 LLRRVDGKLVQPNVVMYNTII 219
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN L+ LC L + F +Q+ KP +VTYTILI+ +
Sbjct: 155 KGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKE-NCKPTVVTYTILIEATLLQGGID 213
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM+L+ + + +PD F YN+I++G
Sbjct: 214 EAMKLLDEMLEINLQPDMFTYNSIIRG 240
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TYN L++ L Y + M A G + N+VTY++LI +VC +
Sbjct: 260 KGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVAR-GCEANVVTYSVLISSVCRDGKVE 318
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E + L+ + G KPD + Y+ ++
Sbjct: 319 EGVGLLKDMKKKGLKPDGYCYDPLI 343
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNT 59
++ K + PD TYN L+ CLC+ + VD S KP++V+Y I++ +C
Sbjct: 432 MLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKV 491
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +++A+ D G +P+ Y +++G
Sbjct: 492 SRVSDAIEVLAAMVDKGCRPNETTYTFLIEG 522
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ CLCK + + +++ +G PN +Y + + +T + A+
Sbjct: 369 PDIVNYNTILACLCKQKRADEALSIFEKL-GEVGCSPNASSYNSMFSALWSTGHKVRALG 427
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + D G PD YN+++
Sbjct: 428 MILEMLDKGVDPDGITYNSLI 448
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD + Y+ L+ LCK + +D M S G P++V Y ++ +C K
Sbjct: 330 KGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVM-ISDGCVPDIVNYNTILACLCKQKRAD 388
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
EA+ + L + G P+ YN++
Sbjct: 389 EALSIFEKLGEVGCSPNASSYNSM 412
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN ++ LCK + F+DQM + PN VTY LI +C + EA
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEFLDQM-ITRDCSPNTVTYNTLISTLCKENQVEEATE 386
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L+ G PD +N++++G
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQG 409
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T+N L++ LC R+ ++MR S G +P+ TY +LID++C+
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR-SKGCEPDEFTYNMLIDSLCSKG 449
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ ++ + SG YNT++ G+
Sbjct: 450 KLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD FTYN L+ LC L N + QM S G +++TY LID C +R
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVITYNTLIDGFCKANKIR 487
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + G + YNT++ G
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDG 514
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ CK + D+M G+ N VTY LID +C ++ + +A +L+
Sbjct: 470 VITYNTLIDGFCKANKIREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKSRRVEDASQLM 528
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G KPD F YN+++ +
Sbjct: 529 DQMIMEGQKPDKFTYNSLLTHF 550
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ TYN L+ LCK + ++ S GI P++ T+ LI +C T+
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELA-RVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N R AM L + G +PD F YN ++
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLI 442
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LCK R + +DQM G KP+ TY L+ + C ++++A +V A
Sbjct: 507 TYNTLIDGLCKSRRVEDASQLMDQMIME-GQKPDKFTYNSLLTHFCRGGDIKKAADIVQA 565
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +G +PD Y T++ G
Sbjct: 566 MTSNGCEPDIVTYGTLISG 584
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N +V CK + NF+ +M G P+ T+ L++ +C +++ A+ ++
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ G+ PD + YN+++ G
Sbjct: 321 MLQEGYDPDVYTYNSVISG 339
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD YN ++ L +L V + GIKP++ T+ +LI +C LR A
Sbjct: 150 LKPDTHFYNRMLNLLVDGNNLKLV-EIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPA 208
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ + G PD + TIM+GY
Sbjct: 209 ILMLEDMPSYGLVPDEKTFTTIMQGY 234
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD FTYN L+ C+ + + V M ++ G +P++VTY LI +C
Sbjct: 531 MIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLISGLCKAG 589
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +L+ ++ G YN +++G
Sbjct: 590 RVEVASKLLRSIQMKGIALTPHAYNPVIQG 619
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+N LV LCK + +D M G P++ TY +I +C ++EA+
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE-GYDPDVYTYNSVISGLCKLGEVKEAVE 351
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + P+ YNT++
Sbjct: 352 FLDQMITRDCSPNTVTYNTLI 372
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ T+N L+K LC+ L ++ M S G+ P+ T+T ++ +L A
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDM-PSYGLVPDEKTFTTIMQGYIEEGDLDGA 243
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+ + + G N I+ G+
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGF 269
>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 738
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
I PD TY ++ CK L + M+ GI P+ VTYTI+I+ C
Sbjct: 607 FIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKER-GITPDAVTYTIMINGYCKMN 665
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LREA L + + G KPD Y I+KG
Sbjct: 666 CLREAHELFKDMKERGIKPDVIAYTVIIKG 695
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD TY ++ CK L + M+ GIKP+++ YT++I + N+ +
Sbjct: 645 RGITPDAVTYTIMINGYCKMNCLREAHELFKDMKER-GIKPDVIAYTVIIKGLLNSGHTE 703
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +L + + D G P + I K
Sbjct: 704 IAFQLYNEMIDMGMTPGATLKRCIQKA 730
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G P+ VTYTI+I+ C T L EA L + + G PD Y ++ GY
Sbjct: 611 GFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGY 661
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD+ YN L + R+ + ++ M S G++PN T+ I+I+ +C+ +
Sbjct: 464 RGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYME-SQGVEPNSTTHKIIIEGLCSAGKVE 522
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + L + +Y ++ GY
Sbjct: 523 EAEEFFNWLKGESVEISVEIYTALVNGY 550
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
YN L LCK + +D+++ S+ + ++ YT LI+ EA L
Sbjct: 402 AYNILFDALCKLGKVDDAVGMLDELK-SMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKE 460
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ + GFKPD YN + G+
Sbjct: 461 MEERGFKPDVVAYNVLAAGF 480
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I ++NFL+ L K + + + S G+ N TYTI+I +C + +R
Sbjct: 188 PNILSFNFLINRLVKHDEVDMALCLFVRFK-SFGLIFNEYTYTIVIKALCKKGDWENVVR 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + ++G D + Y T ++G
Sbjct: 247 VFDEMKEAGVDDDSYCYATFIEG 269
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+ Y +++ C L + +M G+ P++ Y L+ CN++N +A+ +
Sbjct: 296 YAYTAVIRGFCNETKLDEAESVFLEMEKQ-GLVPDVYVYCALVHGYCNSRNFDKALAVYK 354
Query: 71 ALSDSGFKPDCFVYNTIMK 89
++ G K +C +++ I+
Sbjct: 355 SMISRGIKTNCVIFSCILH 373
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + Y ++ LCK Y + R + YT +I CN L EA +
Sbjct: 259 DSYCYATFIEGLCKNNRSDLGYAVLQDYRTR-NAHVHKYAYTAVIRGFCNETKLDEAESV 317
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ G PD +VY ++ GY
Sbjct: 318 FLEMEKQGLVPDVYVYCALVHGY 340
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD TYN ++ LC L +DQ+ S +P ++TYTILI+ +
Sbjct: 183 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL-LSDNCQPTVITYTILIEATMLEGGVD 241
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L+ + G KPD F YNTI++G
Sbjct: 242 EALKLLDEMLSRGLKPDMFTYNTIIRG 268
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK------------------CRSLTTVYN-----FVDQMR 37
++ + L PD+FTYN +++ +CK C YN ++Q +
Sbjct: 250 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGK 309
Query: 38 ASLGIK-----------PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
G K PN+VTY+ILI +C + EAM L+ + + G PD + Y+
Sbjct: 310 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 369
Query: 87 IMKGY 91
++ +
Sbjct: 370 LIAAF 374
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD TYN ++ CLC+ + + + MR S P++VTY I++ C
Sbjct: 460 MVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMR-SCEFHPSVVTYNIVLLGFCKAH 518
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ ++ ++ +G +P+ Y +++G
Sbjct: 519 RIEDAIDVLDSMVGNGCRPNETTYTVLIEG 548
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD ++Y+ L+ C+ L F++ M S G P++V Y ++ +C
Sbjct: 358 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM-ISDGCLPDIVNYNTVLATLCKNGKAD 416
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
+A+ + L + G P+ YNT+
Sbjct: 417 QALEIFGKLGEVGCSPNSSSYNTM 440
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + +D+M S G+KP++ TY +I +C + A
Sbjct: 222 PTVITYTILIEATMLEGGVDEALKLLDEM-LSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 280
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ L G +PD YN +++
Sbjct: 281 MIRNLELKGCEPDVISYNILLRA 303
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + TYN ++ CK + + +D M + G +PN TYT+LI+ + E
Sbjct: 499 EFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGN-GCRPNETTYTVLIEGIGFAGYRAE 557
Query: 65 AMRL------VSALSDSGFK 78
AM L ++A+S+ FK
Sbjct: 558 AMELANDLVRINAISEYSFK 577
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC+ + N + M+ G+ P+ +Y LI C L A+
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIE 385
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD YNT++
Sbjct: 386 FLETMISDGCLPDIVNYNTVL 406
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 34/118 (28%)
Query: 8 PDIFTYNFLVKCLCK------------------CRSLTTVYNFV--------DQMRA--- 38
PDI YN ++ LCK C ++ YN + D++RA
Sbjct: 397 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 456
Query: 39 -----SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S GI P+ +TY +I +C + +A L+ + F P YN ++ G+
Sbjct: 457 ILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGF 514
>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
Length = 927
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PDI ++ +++ L KC+ + + M+A G PN+ TYTILI ++C
Sbjct: 398 MIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAK-GPSPNVRTYTILIRDLCKQM 456
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA+ + DSG +PD VY ++ G+
Sbjct: 457 KMKEAVEYFDEMVDSGCQPDAAVYTCLITGF 487
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
PNL TYT+L++ C KNL EA R + + D GFKPD ++T+++G
Sbjct: 370 PNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEG 416
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L++ LCK + + D+M S G +P+ YT LI N K + +
Sbjct: 440 PNVRTYTILIRDLCKQMKMKEAVEYFDEMVDS-GCQPDAAVYTCLITGFGNQKKMDKVYA 498
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G D YN ++K
Sbjct: 499 LLKEMKEKGCPADGRTYNALIK 520
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 7 PPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD+ TYN L+ LCK R L + V M+ G+KPN+VTY ++D C N+ A
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKK--GVKPNIVTYNAMMDGYCLRNNVNVA 459
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + SG +PD YN ++ GY
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGY 485
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD +T+N L+ LCK + + M + G KP++VTY L++ C+ +
Sbjct: 256 MVRENVDPDDYTFNILIDALCKEGRILEAQGVL-AMMSKRGEKPDIVTYNALMEGYCSRE 314
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ EA L + + G +PD YN ++ GY
Sbjct: 315 NVHEARELFNRMVKRGLEPDVLNYNVLIDGY 345
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PDI YN L+ CK + +MR + P++ +Y LID +CN
Sbjct: 466 MVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHK-NLIPDIASYNSLIDGLCNLG 524
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ + DSG PD YN ++ +
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAF 555
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L++ C ++ ++M G++P+++ Y +LID C TK + EAM
Sbjct: 298 PDIVTYNALMEGYCSRENVHEARELFNRM-VKRGLEPDVLNYNVLIDGYCKTKMVDEAMV 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L + P YN+++ G
Sbjct: 357 LFKELCNKNLVPTIASYNSLIDG 379
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTY L+ L K + + + +M S ++PNLV Y+ LID +C + +A+ L
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKS-SVQPNLVMYSALIDGLCKDGFVSDALGL 217
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
S + + G D YN+++ G
Sbjct: 218 CSQIGERGILLDAVTYNSLIDG 239
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I + + PD +T + +V LCK L + + + G PN+ TYTILI+ +C +
Sbjct: 571 IVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMH-GCSPNVQTYTILINALCKDGS 629
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
EAM L+S + D+ PD + I+
Sbjct: 630 FGEAMLLLSKMEDNDRPPDAITFEIII 656
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI +YN L+ LC + V +D+M S G P+++TY IL+D C T+
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDS-GQSPDVITYNILLDAFCKTQPFD 562
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L + + G PD + + I+
Sbjct: 563 KAISLFRQIVE-GIWPDFYTNHAIV 586
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TYN ++ C ++ + ++M S G++P+++ Y +LI+ C T+ +
Sbjct: 434 KGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDILNYNVLINGYCKTEMVD 492
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + PD YN+++ G
Sbjct: 493 EAIVLFKEMRHKNLIPDIASYNSLIDG 519
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ YN L+ CK + + ++ + + P + +Y LID +CN+
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL-CNKNLVPTIASYNSLIDGLCNSG 384
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +L+ + S PD YN ++
Sbjct: 385 RISHVKKLLDEMHGSAQPPDVVTYNILI 412
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP ++ L+ + + T + Q++ S GI P++ T+TILI+ + + A
Sbjct: 52 PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQ-SKGISPSIATFTILINCYFHQSHTAFAF 110
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + SG++P+ +NTI+ G+
Sbjct: 111 SLLATILKSGYQPNLVTFNTIINGF 135
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ CK + + Q+ GI P+ T ++DN+C + L+ A
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQIVE--GIWPDFYTNHAIVDNLCKGEKLKMAED 600
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ L G P+ Y ++
Sbjct: 601 ALKHLLMHGCSPNVQTYTILI 621
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y+ L+ LCK ++ Q+ GI + VTY LID C+ +E +
Sbjct: 193 PNLVMYSALIDGLCKDGFVSDALGLCSQI-GERGILLDAVTYNSLIDGCCSVGRWQEVTQ 251
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + PD + +N ++
Sbjct: 252 LLTKMVRENVDPDDYTFNILI 272
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I T+ L+ C ++ + + S G +PNLVT+ +I+ C +
Sbjct: 84 KGISPSIATFTILINCYFHQSHTAFAFSLLATILKS-GYQPNLVTFNTIINGFCINGMIF 142
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L G+ D F Y T++ G
Sbjct: 143 KALDFCQNLLAQGYLFDQFTYGTLING 169
>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 454
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PP + TY +++ CK R+ VY +D M S G PN++TYT+++ ++ +
Sbjct: 202 RGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSM-GSQGCHPNVITYTMIMTSLAKCERFE 260
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ + + SG KPD YN+++
Sbjct: 261 EALSVSHRMKSSGCKPDTLFYNSLI 285
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+PPD +T+N V C R + +++M+ G P+++TYT +++ C +N R
Sbjct: 168 HIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRR-GFPPSVITYTTVLEAYCKQRNFRR 226
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++ ++ G P+ Y IM
Sbjct: 227 VYEVLDSMGSQGCHPNVITYTMIM 250
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ LCK R + + S I P+ T+ I + C+ + + EAM +
Sbjct: 141 TMNVLLDVLCKERKIEVAREVFAVL--SPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEE 198
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF P Y T+++ Y
Sbjct: 199 MKRRGFPPSVITYTTVLEAY 218
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN ++ LCK + V +M G PN +TY ILI+N C + + EA
Sbjct: 461 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK-GCHPNPITYNILIENFCRSNKMEEA 519
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ +S G PD +NT++ G+
Sbjct: 520 SKVIVKMSQEGLHPDAVSFNTLIYGF 545
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + ++FTYN ++ LC+ L VD MRA P++VTY LI +C
Sbjct: 212 VIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY--AVPDVVTYNTLIRGLCKKS 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EAM + + + G PD F YNTI+ GY
Sbjct: 270 MPQEAMHYLRRMMNQGCLPDDFTYNTIIDGY 300
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI YN LVK LC + +++M A G P++ TY I+I+ +C N+
Sbjct: 354 KGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM-AEEGCHPDIQTYNIVINGLCKMGNIS 412
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ G+ PD F +NT++ GY
Sbjct: 413 DATVVMNDAIMKGYLPDVFTFNTLIDGY 440
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCNTKNLREA 65
PD FTYN ++ CK ++ V + ++ ++ G P+ VTY LI+ +C ++ A
Sbjct: 288 PDDFTYNTIIDGYCK---ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 344
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KPD VYN+++KG
Sbjct: 345 LELFNEAQAKGIKPDIVVYNSLVKG 369
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK +++ ++ G P++ T+ LID C L A++
Sbjct: 393 PDIQTYNIVINGLCKMGNISDATVVMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQ 451
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + G PD YN+++ G
Sbjct: 452 LVERMWEYGIAPDTITYNSVLNG 474
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+FK PD TY L+ LC + ++ +A GIKP++V Y L+ +C
Sbjct: 317 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAK-GIKPDIVVYNSLVKGLCLQGL 375
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+++++ +++ G PD YN ++ G
Sbjct: 376 ILHALQVMNEMAEEGCHPDIQTYNIVING 404
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L++ LCK +++ +M + G P+ TY +ID C ++EA
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRM-MNQGCLPDDFTYNTIIDGYCKISMVQEATE 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ GF PD Y +++ G
Sbjct: 312 LLKDAVFKGFVPDQVTYCSLING 334
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P+ TYN L++ C+ + + +M G+ P+ V++ LI C
Sbjct: 491 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE-GLHPDAVSFNTLIYGFCRNG 549
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L L + G+ +NT++ +
Sbjct: 550 DLEGAYLLFQKLEEKGYSATADTFNTLIGAF 580
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +N ++ LCK + + ++ G+ NL TY I I +C L EA+R
Sbjct: 184 PNLAAFNKVLHALCKRGDVLEAGLLLGKV-IQRGMSINLFTYNIWIRGLCEAGRLPEAVR 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + PD YNT+++G
Sbjct: 243 LVDGMRAYAV-PDVVTYNTLIRG 264
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN ++ LCK + V +M G PN +TY ILI+N C + + EA
Sbjct: 462 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK-GCHPNPITYNILIENFCRSNKMEEA 520
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ +S G PD +NT++ G+
Sbjct: 521 SKVIVKMSQEGLHPDAVSFNTLIYGF 546
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + ++FTYN ++ LC+ L VD MRA P++VTY LI +C
Sbjct: 213 VIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY--AVPDVVTYNTLIRGLCKKS 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EAM + + + G PD F YNTI+ GY
Sbjct: 271 MPQEAMHYLRRMMNQGCLPDDFTYNTIIDGY 301
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI YN LVK LC + +++M A G P++ TY I+I+ +C N+
Sbjct: 355 KGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM-AEEGCHPDIQTYNIVINGLCKMGNIS 413
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ G+ PD F +NT++ GY
Sbjct: 414 DATVVMNDAIMKGYLPDVFTFNTLIDGY 441
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCNTKNLREA 65
PD FTYN ++ CK ++ V + ++ ++ G P+ VTY LI+ +C ++ A
Sbjct: 289 PDDFTYNTIIDGYCK---ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 345
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KPD VYN+++KG
Sbjct: 346 LELFNEAQAKGIKPDIVVYNSLVKG 370
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK +++ ++ G P++ T+ LID C L A++
Sbjct: 394 PDIQTYNIVINGLCKMGNISDATVVMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQ 452
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + G PD YN+++ G
Sbjct: 453 LVERMWEYGIAPDTITYNSVLNG 475
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+FK PD TY L+ LC + ++ +A GIKP++V Y L+ +C
Sbjct: 318 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAK-GIKPDIVVYNSLVKGLCLQGL 376
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+++++ +++ G PD YN ++ G
Sbjct: 377 ILHALQVMNEMAEEGCHPDIQTYNIVING 405
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L++ LCK +++ +M + G P+ TY +ID C ++EA
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRM-MNQGCLPDDFTYNTIIDGYCKISMVQEATE 312
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ GF PD Y +++ G
Sbjct: 313 LLKDAVFKGFVPDQVTYCSLING 335
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P+ TYN L++ C+ + + +M G+ P+ V++ LI C
Sbjct: 492 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE-GLHPDAVSFNTLIYGFCRNG 550
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L L + G+ +NT++ +
Sbjct: 551 DLEGAYLLFQKLEEKGYSATADTFNTLIGAF 581
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +N ++ LCK + + ++ G+ NL TY I I +C L EA+R
Sbjct: 185 PNLAAFNKVLHALCKRGDVLEAGLLLGKV-IQRGMSINLFTYNIWIRGLCEAGRLPEAVR 243
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + PD YNT+++G
Sbjct: 244 LVDGMRAYAV-PDVVTYNTLIRG 265
>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
Length = 800
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LCK + D+M S GI PN+ T+TIL+ ++CN L+EA
Sbjct: 209 PNRATYNVLIHGLCKRGTPVDALKLFDEM-ISRGITPNVKTHTILLSSMCNAGQLKEAEN 267
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ D G PD YN + G
Sbjct: 268 LLHSMEDKGCPPDEVTYNAFLSG 290
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV----TYTILIDNVCNT 59
K PD F YN L+K LC L + + +M ++ N+V TYT +I +C
Sbjct: 382 KGFTPDTFCYNTLLKALCDAGDLDGARSLMSEM-----VRNNVVLDIHTYTTMIIGLCKE 436
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + EAM++ + + G P YN ++ G
Sbjct: 437 QLVDEAMQVFDGMVEVGCHPSVMTYNVLIDG 467
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK R+L +++ G + +TY LID++ +A+
Sbjct: 539 PDVVTYNTLLNGLCKVRNLDGALRLFRELQVK-GFPLDEITYGTLIDSLLRAHRYNDALT 597
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + SG P +YN++M+
Sbjct: 598 LFQDILHSGGTPSMPIYNSMMR 619
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D T LV+ +C+ + Y + + S G+ P++VTY L++ +C +NL A+RL
Sbjct: 505 DSETLQKLVESMCQSGQVLKAYKLLRGIIDS-GVVPDVVTYNTLLNGLCKVRNLDGALRL 563
Query: 69 VSALSDSGFKPDCFVYNTIM 88
L GF D Y T++
Sbjct: 564 FRELQVKGFPLDEITYGTLI 583
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 36/123 (29%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS----LGIK---------------- 43
K PPD TYN + LCK + ++ +R + LG+K
Sbjct: 275 KGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYE 334
Query: 44 ----------------PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTI 87
P++V YTI+I +A + + GF PD F YNT+
Sbjct: 335 EGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTL 394
Query: 88 MKG 90
+K
Sbjct: 395 LKA 397
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV--------------TYTILI 53
P + TYN L+ L + L +M +G P+L T L+
Sbjct: 456 PSVMTYNVLIDGLYRAHRLEEARMLFYKME--VGNNPSLFLRLTLGANQVRDSETLQKLV 513
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++C + + +A +L+ + DSG PD YNT++ G
Sbjct: 514 ESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNG 550
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y +++ + + F D+M+ G P+ Y L+ +C+ +L A
Sbjct: 351 PDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEK-GFTPDTFCYNTLLKALCDAGDLDGARS 409
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+S + + D Y T++ G
Sbjct: 410 LMSEMVRNNVVLDIHTYTTMIIG 432
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ T+ L+ +C L N + M G P+ VTY + +C
Sbjct: 237 MISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDK-GCPPDEVTYNAFLSGLCKAG 295
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+ + AL +G FV +KGY
Sbjct: 296 RVDEAIERLEALRHTG----TFVLG--LKGY 320
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TY ++ LCK + + D M +G P+++TY +LID + L EA R+
Sbjct: 422 DIHTYTTMIIGLCKEQLVDEAMQVFDGM-VEVGCHPSVMTYNVLIDGLYRAHRLEEA-RM 479
Query: 69 VSALSDSGFKPDCFVYNTI 87
+ + G P F+ T+
Sbjct: 480 LFYKMEVGNNPSLFLRLTL 498
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+IFTYN L++ LC +++M SL I PN+VT+++LI+ C N+
Sbjct: 74 KGISPNIFTYNSLIQGLCNFSRWREASAMLNEM-MSLNIMPNIVTFSLLINIFCKEGNVF 132
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ +++ G +P+ Y+++M GY
Sbjct: 133 EARGVLKTMTEMGVEPNVVTYSSLMNGY 160
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ TY ++ LCK +M G +P++VTY+ +ID++C +
Sbjct: 1 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKM-GEAGCQPDVVTYSTIIDSLCKDR 59
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + S + G P+ F YN++++G
Sbjct: 60 RVNEALDIFSYMKAKGISPNIFTYNSLIQG 89
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD+F+YN L+ CK + + ++M G+ P++V+Y LID +C
Sbjct: 176 MITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM-IHQGLTPDIVSYNTLIDGLCQLG 234
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA L + +G PD Y+ ++ G+
Sbjct: 235 RLREAHDLFKNMLTNGNLPDLCTYSILLDGF 265
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ CK L + M+++ +KPN+V Y ILID +C ++NL+EA +
Sbjct: 253 PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTY-LKPNMVMYNILIDAMCKSRNLKEARK 311
Query: 68 LVSALSDSGFKPD 80
L S L G +P+
Sbjct: 312 LFSELFVQGLQPN 324
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI +YN L+ LC+ L ++ M + G P+L TY+IL+D C
Sbjct: 211 MIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN-GNLPDLCTYSILLDGFCKQG 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A RL A+ + KP+ +YN ++
Sbjct: 270 YLAKAFRLFRAMQSTYLKPNMVMYNILI 297
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I T++ L+ CK ++ + M +G++PN+VTY+ L++ + EA +
Sbjct: 113 PNIVTFSLLINIFCKEGNVFEARGVLKTM-TEMGVEPNVVTYSSLMNGYSLQAEVFEARK 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KPD F YN ++ GY
Sbjct: 172 LFDVMITKGCKPDVFSYNILINGY 195
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TY+ L+ + D M + G KP++ +Y ILI+ C K + EA
Sbjct: 146 VEPNVVTYSSLMNGYSLQAEVFEARKLFDVM-ITKGCKPDVFSYNILINGYCKAKRIGEA 204
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G PD YNT++ G
Sbjct: 205 KQLFNEMIHQGLTPDIVSYNTLIDG 229
>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 500
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PP + TY +++ CK R+ VY +D M S G PN++TYT+++ ++ +
Sbjct: 248 RGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSM-GSQGCHPNVITYTMIMTSLAKCERFE 306
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ + + SG KPD YN+++
Sbjct: 307 EALSVSHRMKSSGCKPDTLFYNSLI 331
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+PPD +T+N V C R + +++M+ G P+++TYT +++ C +N R
Sbjct: 214 HIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRR-GFPPSVITYTTVLEAYCKQRNFRR 272
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++ ++ G P+ Y IM
Sbjct: 273 VYEVLDSMGSQGCHPNVITYTMIM 296
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ LCK R + + S I P+ T+ I + C+ + + EAM +
Sbjct: 187 TMNVLLDVLCKERKIEVAREVFAVL--SPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEE 244
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF P Y T+++ Y
Sbjct: 245 MKRRGFPPSVITYTTVLEAY 264
>gi|357495705|ref|XP_003618141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493156|gb|AES74359.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 846
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ CK R L + ++ ++ G+ PNL++Y+ L++ +C ++EA +
Sbjct: 296 PDLVTYNILINGYCKKRRLEDAF-YLYKIMGIRGVVPNLISYSALMNGLCKEGKIKEAHQ 354
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD YNT++ GY
Sbjct: 355 LFNQMVQRGIDPDVVSYNTLISGY 378
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T+N + LC+ V F+++M G +P+LVTY ILI+ C + L +A L
Sbjct: 264 YTFNIMTHVLCREGDSDKVNGFLEKMEEE-GFEPDLVTYNILINGYCKKRRLEDAFYLYK 322
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G P+ Y+ +M G
Sbjct: 323 IMGIRGVVPNLISYSALMNG 342
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ TY ++ CLC+ + + N +++M SLGI P+L LI+ C ++
Sbjct: 504 KSMKLNLTTYKAIISCLCRVKRTSEAENLLEEM-VSLGILPDLEIKRALINGYCEENDVD 562
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A+ L+ + D YN I+K
Sbjct: 563 KAVSLLKFFAKEFQVYDTESYNAIVK 588
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ N L+ L K + + ++M LGI N T+ I+ +C + +
Sbjct: 226 PNVVACNCLLNGLSKINYIGECWEVYEEM-GRLGIHRNGYTFNIMTHVLCREGDSDKVNG 284
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + GF+PD YN ++ GY
Sbjct: 285 FLEKMEEEGFEPDLVTYNILINGY 308
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L + LC ++ +M A +K NL TY +I +C K EA
Sbjct: 473 PEMSTYIKLAESLCSFNNVEEALILKSEM-AKKSMKLNLTTYKAIISCLCRVKRTSEAEN 531
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G PD + ++ GY
Sbjct: 532 LLEEMVSLGILPDLEIKRALINGY 555
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N ++ CK + D M +G+KPN++TY+ LID C + EA +L+S++
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLM-VRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G KPDC YNT++ GY
Sbjct: 538 FSVGMKPDCVTYNTLINGY 556
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ C F+ +MR+ G++P++VTY L+D +C EA +
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRSTEARK 322
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G +PD Y T+++GY
Sbjct: 323 IFDSMTKRGLEPDIATYCTLLQGY 346
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ PD+ TY+ ++ LCK +++ + M + G+ PN +TY ++ C+++
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKN-GVMPNCMTYNSILHGYCSSE 280
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYNSLM 308
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ C + + M S+G+KP+ VTY LI+ C + +A+
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSM-FSVGMKPDCVTYNTLINGYCRVSRMDDALA 567
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG P+ YN I++G
Sbjct: 568 LFKEMVSSGVSPNIITYNIILQG 590
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ C+ + +M +S G+ PN++TY I++ + +T+ A
Sbjct: 542 MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRRTAAA 600
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ SG + + YN I+ G
Sbjct: 601 KELYVGITKSGTQLELSTYNIILHG 625
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y ++ K Y+ +M I P++VTY+ +I +C + + +AM
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRRISPDVVTYSSIIAALCKGQAMDKAME 252
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + +G P+C YN+I+ GY
Sbjct: 253 VLTTMVKNGVMPNCMTYNSILHGY 276
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK T D M G++P++ TY L+ L E
Sbjct: 299 PDVVTYNSLMDYLCKNGRSTEARKIFDSM-TKRGLEPDIATYCTLLQGYATKGALVEMHA 357
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD V+N ++ Y
Sbjct: 358 LLDLMVRNGIHPDHHVFNILICAY 381
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY ++ LCK S+ + +QM G+ PN++ YT LI ++C +A
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHSLCIFDKWDKA 460
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G + +N+I+ +
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIHSH 486
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +N L+ K + +MR G+ PN+VTY +I +C + ++ +AM
Sbjct: 369 PDHHVFNILICAYAKQEKVDEAMLVFSKMRQH-GLNPNVVTYGAVIGILCKSGSVDDAML 427
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ D G P+ VY +++
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLI 448
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+ T+ L+K LC + + + V + L P++ + TIL+ +C+ +EA+ L
Sbjct: 121 EAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALEL 180
Query: 69 VSALSDS---GFKPDCFVYNTIMKGY 91
+ ++D G PD Y T++ G+
Sbjct: 181 LHMMADDRGGGSAPDVVSYTTVINGF 206
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + TY L+ C C+ L + + + G + +T+T L+ +C K +
Sbjct: 82 KVTPTVHTYGILIGCCCRAGRLDLGFAALGNV-VKKGFRVEAITFTPLLKGLCADKRTSD 140
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ PD F ++KG
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKG 167
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ +L ++ +D M + GI P+ + ILI + +
Sbjct: 330 RGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN-GIHPDHHVFNILICAYAKQEKVD 388
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM + S + G P+ Y ++
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVI 413
>gi|270342070|gb|ACZ74655.1| hypothetical protein [Phaseolus vulgaris]
gi|270342076|gb|ACZ74661.1| hypothetical protein [Phaseolus vulgaris]
Length = 485
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV CK R L + M G+ PNL+TYT L++ +C ++EA +
Sbjct: 142 PDLVTYNTLVNSYCKKRRLEDAFYLYKIMYVR-GVMPNLITYTTLMNGLCEEGKVKEAHQ 200
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YNT++ GY
Sbjct: 201 LFHQMVHRGIAPDIVSYNTLVCGY 224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T+N + L K V F+++M G +P+LVTY L+++ C + L +A L
Sbjct: 110 YTFNIMTHVLSKDGDTDKVTGFLEKMEEE-GFEPDLVTYNTLVNSYCKKRRLEDAFYLYK 168
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G P+ Y T+M G
Sbjct: 169 IMYVRGVMPNLITYTTLMNG 188
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I +L P++ N L+ L + +T + +M LG++ N T+ I+ + +
Sbjct: 66 IETRLIPNVIACNCLLSGLSRFNYITQCWEVYAEM-GRLGVQRNAYTFNIMTHVLSKDGD 124
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + GF+PD YNT++ Y
Sbjct: 125 TDKVTGFLEKMEEEGFEPDLVTYNTLVNSY 154
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++P ++ Y++LV LCK +F+ ++ G P + TY L++++C N E
Sbjct: 281 KIPEEV--YDYLVVALCKEGKPFAARSFLHRISED-GYTPKMNTYNKLVESLCEFNNEEE 337
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A+ L S + + K + Y ++
Sbjct: 338 ALILKSDMENKSMKVNAAAYRAVI 361
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LC+ + + QM GI P++V+Y L+ C ++
Sbjct: 177 PNLITYTTLMNGLCEEGKVKEAHQLFHQM-VHRGIAPDIVSYNTLVCGYCRHGEMQMCRS 235
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + + PD I+ GY
Sbjct: 236 ILYEMIGNRICPDSITCRVIVDGY 259
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N ++ CK + D M +G+KPN++TY+ LID C + EA +L+S++
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLM-VRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G KPDC YNT++ GY
Sbjct: 538 FSVGMKPDCVTYNTLINGY 556
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ C F+ +MR+ G++P++VTY L+D +C EA +
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRSTEARK 322
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G +PD Y T+++GY
Sbjct: 323 IFDSMTKRGLEPDIATYCTLLQGY 346
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ PD+ TY+ ++ LCK +++ + M + G+ PN +TY ++ C+++
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKN-GVMPNCMTYNSILHGYCSSE 280
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYNSLM 308
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ C + + M S+G+KP+ VTY LI+ C + +A+
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSM-FSVGMKPDCVTYNTLINGYCRVSRMDDALA 567
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG P+ YN I++G
Sbjct: 568 LFKEMVSSGVSPNIITYNIILQG 590
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ C+ + +M +S G+ PN++TY I++ + +T+ A
Sbjct: 542 MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRRTAAA 600
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ SG + + YN I+ G
Sbjct: 601 KELYVGITKSGTQLELSTYNIILHG 625
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y ++ K Y+ +M I P++VTY+ +I +C + + +AM
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRRISPDVVTYSSIIAALCKGQAMDKAME 252
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + +G P+C YN+I+ GY
Sbjct: 253 VLTTMVKNGVMPNCMTYNSILHGY 276
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK T D M G++P++ TY L+ L E
Sbjct: 299 PDVVTYNSLMDYLCKNGRSTEARKIFDSM-TKRGLEPDIATYCTLLQGYATKGALVEMHA 357
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD V+N ++ Y
Sbjct: 358 LLDLMVRNGIHPDHHVFNILICAY 381
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY ++ LCK S+ + +QM G+ PN++ YT LI ++C +A
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHSLCIFDKWDKA 460
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G + +N+I+ +
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIHSH 486
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +N L+ K + +MR G+ PN+VTY +I +C + ++ +AM
Sbjct: 369 PDHHVFNILICAYAKQEKVDEAMLVFSKMRQH-GLNPNVVTYGAVIGILCKSGSVDDAML 427
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ D G P+ VY +++
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLI 448
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+ T+ L+K LC + + + V + L P++ + TIL+ +C+ +EA+ L
Sbjct: 121 EAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALEL 180
Query: 69 VSALSDS---GFKPDCFVYNTIMKGY 91
+ ++D G PD Y T++ G+
Sbjct: 181 LHMMADDRGGGSAPDVVSYTTVINGF 206
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + TY L+ C C+ L + + + G + +T+T L+ +C K +
Sbjct: 82 KVTPTVHTYGILIGCCCRAGRLDLGFAALGNV-VKKGFRVEAITFTPLLKGLCADKRTSD 140
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ PD F ++KG
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKG 167
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ +L ++ +D M + GI P+ + ILI + +
Sbjct: 330 RGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN-GIHPDHHVFNILICAYAKQEKVD 388
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM + S + G P+ Y ++
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVI 413
>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
Length = 321
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N ++ LCK Y F++ MR S+G+ P +VTY +LID C + L A+
Sbjct: 43 PNALVFNGIMDALCKEGRSAEAYGFIETMR-SMGVSPTIVTYNLLIDGFCKEEKLHRALE 101
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G +P+ YNT + G
Sbjct: 102 ILQEMTGRGHEPNHVTYNTFLHG 124
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ CK L + +M G +PN VTY + +C + +A+
Sbjct: 78 PTIVTYNLLIDGFCKEEKLHRALEILQEMTGR-GHEPNHVTYNTFLHGLCKYGKVDDALA 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L A+++ + D + Y T++ G
Sbjct: 137 LFRAMTEKKIRLDVYGYTTLIDG 159
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ D++ Y L+ LC+ L Y+ +D+M S G P Y ++ +C +
Sbjct: 144 KKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS-GCVPKPGCYNAILSWLCKGSRIN 202
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L ++ SG PD + ++ GY
Sbjct: 203 EAHKLFKRMTGSGILPDWLTFGMMVFGY 230
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+ LV LCK LT + V+ M G PN + + ++D +C EA
Sbjct: 8 PTVVTFGILVDGLCKANRLTDAFELVEVM-GERGCFPNALVFNGIMDALCKEGRSAEAYG 66
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P YN ++ G+
Sbjct: 67 FIETMRSMGVSPTIVTYNLLIDGF 90
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
A G P +VT+ IL+D +C L +A LV + + G P+ V+N IM
Sbjct: 2 AEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIM 52
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN + LCK + M I+ ++ YT LID +C L EA
Sbjct: 113 PNHVTYNTFLHGLCKYGKVDDALALFRAMTEK-KIRLDVYGYTTLIDGLCQAGKLAEAYS 171
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +SG P YN I+
Sbjct: 172 LLDEMENSGCVPKPGCYNAIL 192
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ L K R + +F+ +M GI P++VTYT ++ +C L EA+R
Sbjct: 301 PDVVTYNIIIDSLYKDRLVNDAADFLSEM-VDQGIPPDVVTYTTILHGLCYLGQLNEAIR 359
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G KPD YNTI+
Sbjct: 360 LFKKMEQKGCKPDVVAYNTII 380
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD+ TY ++ LC L +M G KP++V Y +ID++C +
Sbjct: 329 MVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQK-GCKPDVVAYNTIIDSLCKDR 387
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +AM +S + D G P+ Y+TI+ G+
Sbjct: 388 LVNDAMEFLSEMVDRGIPPNAVTYSTILHGF 418
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN L+ LC + + +M + G KPN+VTY +ID++C + + +AM
Sbjct: 196 PDVISYNTLINGLCNSGNTNMAVHVFKKMEQN-GCKPNVVTYNTIIDSLCKDRLVNDAMD 254
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S + G PD YN+I+ G
Sbjct: 255 FLSEMVGRGIPPDAITYNSIVHG 277
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD TYN +V LC L +M + G KP++VTY I+ID++ +
Sbjct: 259 MVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQN-GCKPDVVTYNIIIDSLYKDR 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A +S + D G PD Y TI+ G
Sbjct: 318 LVNDAADFLSEMVDQGIPPDVVTYTTILHG 347
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+++ N L+ CLC+ + + +M LGI+P+++T+T LI+ VCN ++ A+ L
Sbjct: 128 VYSLNILINCLCRLNHVDFAVSVWGKM-FKLGIQPDVITFTTLINGVCNEGKIKVAVELY 186
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ + SG +PD YNT++ G
Sbjct: 187 NEMVRSGHEPDVISYNTLING 207
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L P+ TYN ++K LC L +M +S G+ P L+TY+IL++ +C +L
Sbjct: 542 KKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSS-GMLPTLMTYSILLNGLCKHGHLD 600
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L ++ + +PD +Y +++G
Sbjct: 601 EALKLFKSMKEKKLEPDIILYTILIEG 627
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PP+ TY+ ++ C L +M + PN +T++IL+D +C
Sbjct: 399 MVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEM-VGRNVMPNTLTFSILVDGLCQEG 457
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + +++ G +P+ + YN +M GY
Sbjct: 458 MVSEARWVFETMTEKGVEPNIYTYNALMNGY 488
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 4 KQLPPDIFTYNFLVK--CL-CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K + P+I+TYN L+ CL CK V+ ++ G P+L +Y ILI+ CN++
Sbjct: 472 KGVEPNIYTYNALMNGYCLRCKMNEARKVF----EIMVGKGCAPDLHSYNILINGYCNSR 527
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L++ +S P+ YNTIMKG
Sbjct: 528 RMDKAKALLTQMSVKKLTPNTVTYNTIMKG 557
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ T+ L+ +C + ++M S G +P++++Y LI+ +CN+ N A
Sbjct: 159 IQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS-GHEPDVISYNTLINGLCNSGNTNMA 217
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + + +G KP+ YNTI+
Sbjct: 218 VHVFKKMEQNGCKPNVVTYNTII 240
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+ T++ LV LC+ + + +V + G++PN+ TY L++ C
Sbjct: 434 MVGRNVMPNTLTFSILVDGLCQ-EGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRC 492
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G PD YN ++ GY
Sbjct: 493 KMNEARKVFEIMVGKGCAPDLHSYNILINGY 523
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ L+ LCK L M+ ++P+++ YTILI+ + L A
Sbjct: 581 PTLMTYSILLNGLCKHGHLDEALKLFKSMKEK-KLEPDIILYTILIEGMFIGGKLEVAKG 639
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S LS G +P YN ++KG
Sbjct: 640 LFSKLSADGIQPPGRTYNVMIKG 662
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++++ PD+ TYN L++ CK R +D MR G P VTY +++D +C
Sbjct: 178 MLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVE-GCTPTNVTYNVIMDGMCREG 236
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A L+++L G P+ YNT++KG
Sbjct: 237 DVDYARELLNSLPSYGCTPNTVNYNTVLKG 266
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I TYN +V LC+ + + M+ G KPN+ TY IL+ +CN + +A L
Sbjct: 326 NIVTYNAVVSGLCEQGHVDGALYLLSNMQTD-GCKPNIFTYNILVKGLCNAERWEDAEDL 384
Query: 69 VSALSDSGFKPDCFVYNTIM 88
++ +S + PD +NTI+
Sbjct: 385 MAKMSQTDCLPDILTFNTII 404
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN L+ LC + +D M G P++VTY IL++ C + R+AM
Sbjct: 150 PSAYAYNPLMHALCVRGQVRDALVLLDNMLYR-GCAPDVVTYNILLEAACKGRGYRQAME 208
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P YN IM G
Sbjct: 209 LIDLMRVEGCTPTNVTYNVIMDG 231
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+P P+ TY+ +++ L K + +++M S G P + Y +L + +
Sbjct: 419 VFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEM-GSKGFNPE-INYHLLAECL 476
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA+++V L D+G P +YNTI+ G
Sbjct: 477 NEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLG 510
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFTYN LVK LC + + +M + + P+++T+ +I +C +A+
Sbjct: 360 PNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCL-PDILTFNTIIGFLCQKGLTMQAVE 418
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G P+ Y+++++G
Sbjct: 419 VFKQMPEKGCCPNSVTYSSVIEG 441
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP T + ++ LC+ +++M + N+VTY ++ +C ++ A+
Sbjct: 289 PPSEATLSVVISSLCQEGLFQRAIRLLEKM-SKHDCTANIVTYNAVVSGLCEQGHVDGAL 347
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+S + G KP+ F YN ++KG
Sbjct: 348 YLLSNMQTDGCKPNIFTYNILVKG 371
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ N LV+ LC+ V+ + G VTY+ L D C L EA
Sbjct: 85 PPDVALANRLVRDLCRRGRPADAARVVE----ACGSAATAVTYSALADGYCRVGRLDEAR 140
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
R+V + P + YN +M
Sbjct: 141 RVVDGMP---VLPSAYAYNPLM 159
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+I Y+ L +CL + L V +++ + GI P V Y ++ +C
Sbjct: 461 KGFNPEI-NYHLLAECLNEEDKLVEAIQMVHKLQDT-GISPQAVLYNTILLGLCRNGKTD 518
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ ++S + G PD Y+ +++G
Sbjct: 519 QAIDILSNMVSDGCMPDESTYSILIQG 545
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVTY I++D +N + A
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEM-VDQGCTPNLVTYNIMMDLHAKARNYQSA 523
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 524 LKLYRDMQNAGFEPDKVTYSIVME 547
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ + L N +QM+ + G KP+ VTY LID L AM
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEA-GCKPDRVTYCTLIDIHAKAGFLDIAMD 455
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD F Y+ I+
Sbjct: 456 MYQRMQAGGLSPDTFTYSVII 476
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +D+M G +PN VTY LI + L EAM +
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRD-GCQPNTVTYNRLIHSYGRANYLNEAMNV 421
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G KPD Y T++
Sbjct: 422 FNQMQEAGCKPDRVTYCTLI 441
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+ PD TY L+ K L + +M+A G+ P+ TY+++I+ +
Sbjct: 421 VFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCL 479
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L A +L + D G P+ YN +M
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMM 511
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ + M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 502 PNLVTYNIMMDLHAKARNYQSALKLYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLEEAEA 560
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 561 VFTEMQQKNWIPDEPVYGLLV 581
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L++ +C+ +D+MRA G PN+VTY ++I+ +C + +A
Sbjct: 176 PNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAK-GCTPNIVTYNVIINGMCREGRVDDARE 234
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ L GF+PD Y T++KG
Sbjct: 235 LLNRLPSYGFQPDTVSYTTLLKG 257
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY L++ LC + + +D M G +PN+VTYT+L++ +C +AM
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRR-GCQPNVVTYTVLLEAMCRNSGFEQAMA 199
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G P+ YN I+ G
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIING 222
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ T+N LV C+ L V+QM G PNL+TY L+D + + +A+
Sbjct: 487 PPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEH-GCTPNLITYNTLLDGITKDCSSEDAL 545
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ L G PD +++I+
Sbjct: 546 ELLHGLVSKGVSPDVITFSSII 567
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F+ +P P+ TY L+ LC L V +M PN+VT+ +L+ C
Sbjct: 445 LFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRG-DCPPNVVTFNVLVSFFCQK 503
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA+ LV + + G P+ YNT++ G
Sbjct: 504 GFLEEAIELVEQMMEHGCTPNLITYNTLLDG 534
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ + K S + + S G+ P+++T++ +I + + EA++
Sbjct: 523 PNLITYNTLLDGITKDCSSEDALELLHGL-VSKGVSPDVITFSSIIGILSKEDRIEEAVQ 581
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + D G +P VYN I+ G
Sbjct: 582 LFHVVQDIGMRPKAVVYNKILLG 604
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR---ASLGIKPNLVTYTILIDNVCNTKNLR 63
P D+F YN LV C+ Y +D R S+ + P+ TYT LI +C+ +
Sbjct: 108 PVDVFAYNTLVAGYCR-------YGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVA 160
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ + G +P+ Y +++
Sbjct: 161 DALSLLDDMLRRGCQPNVVTYTVLLEA 187
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ T++ L++ C+ + ++QM G N I+I+++C +
Sbjct: 277 KNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEH-GCATNTTLCNIVINSICKQGRVD 335
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +L++ + G PD Y T++KG
Sbjct: 336 DAFKLLNDMGSYGCNPDTISYTTVLKG 362
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+I TYN ++ +C+ + ++++ S G +P+ V+YT L+ +C +K
Sbjct: 207 KGCTPNIVTYNVIINGMCREGRVDDARELLNRL-PSYGFQPDTVSYTTLLKGLCASKRWD 265
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+ L + + + P+ ++ +++
Sbjct: 266 DVEELFAEMMEKNCMPNEVTFDMLIR 291
Score = 37.7 bits (86), Expect = 0.93, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y ++K LC+ +++M + PN VT+ I +C + +A+
Sbjct: 351 PDTISYTTVLKGLCRAERWDDAKELLNEMVRN-NCPPNEVTFNTFICILCQKGLIEQAIM 409
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S+ G YN ++ G+
Sbjct: 410 LIEQMSEHGCTVGVVTYNALVNGF 433
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G P++ T LI N+C +A R++ A SG D F YNT++ GY
Sbjct: 71 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGY 121
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PP+ T+N + LC+ + ++QM + G +VTY L++ C
Sbjct: 379 MVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQM-SEHGCTVGVVTYNALVNGFCVQG 437
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A+ L ++ KP+ Y T++ G
Sbjct: 438 HIDSALELFRSMP---CKPNTITYTTLLTG 464
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P YN ++ LCK + +F M S G PN TY ILI+ + + L+EA
Sbjct: 593 PKAVVYNKILLGLCKRCEIDNAIDFFAYM-VSNGCMPNESTYIILIEGLAHEGLLKEAQD 651
Query: 68 LVSALSDSG 76
L+S L G
Sbjct: 652 LLSVLCSRG 660
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN LV LC+ + +N V+ M + S + P++VTYT L+ C + EA+
Sbjct: 260 PDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEAL 319
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP+ YNT++KG
Sbjct: 320 VVFEEMVSKGLKPNEITYNTLIKG 343
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+N L++ CK + + F +M + P+LVTY L+D +C + A
Sbjct: 225 PDTYTFNILIRGFCKNSMVDEGFRFFKEM-SRFKCDPDLVTYNTLVDGLCRAGKVNIAHN 283
Query: 68 LVSAL--SDSGFKPDCFVYNTIMKGY 91
+V+ + + PD Y T+++GY
Sbjct: 284 VVNGMVKKSTNLNPDVVTYTTLVRGY 309
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TY LV+ C + ++M S G+KPN +TY LI +C + + +
Sbjct: 295 LNPDVVTYTTLVRGYCMKHEIDEALVVFEEM-VSKGLKPNEITYNTLIKGLCEVQKIDKI 353
Query: 66 MRLVS-ALSDSGFKPDCFVYNTIMKGY 91
++ AL GF PD NT+M +
Sbjct: 354 KQIFEGALGGGGFIPDTCTLNTLMNAH 380
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ TYN L+K LC+ + + + + G P+ T L++ CN
Sbjct: 325 MVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAG 384
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
NL +A+ + + +PD Y+ +++
Sbjct: 385 NLNDALEVFEKMMVLNVRPDSATYSVLIR 413
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N L+ L K + D+M ++ G+ P+ T+ ILI C + E R
Sbjct: 189 PSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFR 248
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S PD YNT++ G
Sbjct: 249 FFKEMSRFKCDPDLVTYNTLVDG 271
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T N L+ C +L ++M L ++P+ TY++LI N+C N A +
Sbjct: 368 PDTCTLNTLMNAHCNAGNLNDALEVFEKMMV-LNVRPDSATYSVLIRNLCQRGNFERAEQ 426
Query: 68 LVSALSD 74
L LS+
Sbjct: 427 LFDELSE 433
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I N ++K LCK + + + V +M S GI P+L TY+++ID +C +K + +A R
Sbjct: 81 PKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAER 139
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G +P+ YN+++ GY
Sbjct: 140 VLEQMVEAGTRPNSITYNSLIHGY 163
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + ++ ++ LCK + + +D M G +PN+VT+ L++ C N+ EA
Sbjct: 363 PPGVKYFSSIINNLCKEGRVAEGKDIMDMM-VQTGQRPNVVTFNSLMEGYCLVGNMEEAF 421
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ A++ G +P+C++Y T++ GY
Sbjct: 422 ALLDAMASIGIEPNCYIYGTLVDGY 446
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ C ++ + +D M AS+GI+PN Y L+D C + +A+
Sbjct: 399 PNVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALT 457
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP +Y+ I+ G
Sbjct: 458 VFRDMLHKGVKPTSVLYSIILHG 480
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTY+ ++ LCK +++ ++QM G +PN +TY LI + E+
Sbjct: 114 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQM-VEAGTRPNSITYNSLIHGYSISGMWNES 172
Query: 66 MRLVSALSDSGFKP 79
+R+ +S G P
Sbjct: 173 VRVFKQMSSCGVIP 186
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 33/120 (27%)
Query: 4 KQLPPDIFTYNFLVKCLCKCR----------------------SLTTVYNFVDQMRA--- 38
+ PP I TYN L+ C + S + +Y FV
Sbjct: 8 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEVDKA 67
Query: 39 --------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G+ P ++ +I +C K + +A +V + DSG PD F Y+ I+ G
Sbjct: 68 HCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDG 127
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ +N L+ +C + + M+ G+ P+ VT+ +I ++C
Sbjct: 251 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRIG 309
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+ + + D G P VY +++G
Sbjct: 310 RLDDALHKFNHMVDIGVPPSEAVYGCLIQG 339
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T+N ++ + K D + ++ G+ PN+ TY+++I N+ ++ EA L
Sbjct: 540 DIITFNIVISAMFKVGRRQEAKELFDAI-STYGLVPNIQTYSMMITNLIKEESYEEADNL 598
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
++ SG D + N I++
Sbjct: 599 FISVEKSGHASDSRLLNHIVR 619
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD T+ ++ LC+ L + + M +G+ P+ Y LI CN L
Sbjct: 289 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHM-VDIGVPPSEAVYGCLIQGCCNHGELV 347
Query: 64 EAMRLVSALSDSGFKP 79
+A L+S + + P
Sbjct: 348 KAKELISEMMNKDIPP 363
>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
Length = 795
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L+ L K + N D+M+ + G+KP++VT L+ C + EA++
Sbjct: 396 PDVFTYGCLIHWLSKHHKVHEAVNLWDKMKEA-GVKPSIVTCHSLLLGYCEKGCMDEALK 454
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S + GF P+ Y T+MKGY
Sbjct: 455 LYSEMPGKGFPPNEVTYTTLMKGY 478
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y + LCK R + +MR + G+KP TY ++D + + EA+R
Sbjct: 221 PDERVYAITITGLCKLRDADRAVQVLGKMREA-GLKPRDFTYNSVVDVLVKVGRMDEALR 279
Query: 68 LVSA-LSDSGFKPDCFVYNTIMKGY 91
L L +G K D F+ T+M+GY
Sbjct: 280 LKDQMLLATGKKMDVFLATTLMQGY 304
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP+ TY L+K K ++ Y +++M + G+ TY ILI+ +C +
Sbjct: 462 KGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQN-GVSCGEYTYNILINGLCMVDRVC 520
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E ++ GF P YN+I+ G+
Sbjct: 521 EVDEMLKRFVSEGFVPTTMTYNSIINGF 548
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TY + C+ + MR + GI P++ Y I+ C N+
Sbjct: 567 KGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCN-GIHPDIAAYNAFINMFCKQGNMS 625
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ + L G P+ VYN+ + GY
Sbjct: 626 HALHFLVLLLKDGLTPNVTVYNSFVTGY 653
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++ K + + QM GI PN+VTYT ID C T A++
Sbjct: 536 PTTMTYNSIINGFVKAGMMGSALAMYRQM-CEKGITPNIVTYTSFIDGYCRTNCCDLAVK 594
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +G PD YN +
Sbjct: 595 LLIYMRCNGIHPDIAAYNAFI 615
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L LC+ + +D M L + PN VTY +LI+ L+EA +
Sbjct: 711 PDDKTFTALTHGLCRSGDIDGAKRLLDDM-TRLDVCPNTVTYNMLINAHIRDGKLQEAFQ 769
Query: 68 LVSALSDSGFKPDCFVYN 85
L + SG PD YN
Sbjct: 770 LHDKMLSSGVVPDDTTYN 787
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y+ +++ R D+M A G+KP+ Y I I +C ++ A+++
Sbjct: 187 DAKMYDVVMRACVVGRMHGDAVRLFDEM-AGAGVKPDERVYAITITGLCKLRDADRAVQV 245
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G KP F YN+++
Sbjct: 246 LGKMREAGLKPRDFTYNSVV 265
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P FTYN +V L K + DQM + G K ++ T L+ C + +A
Sbjct: 254 LKPRDFTYNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKA 313
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L G P Y ++KG
Sbjct: 314 LDLFDEAVRDGVTPTNVTYTVLIKG 338
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR-EAMR 67
D+F L++ C + + D+ G+ P VTYT+LI C+ + + E +
Sbjct: 293 DVFLATTLMQGYCLHGEIGKALDLFDEAVRD-GVTPTNVTYTVLIKG-CDAEGMTDETYK 350
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G P + +N ++KG
Sbjct: 351 LCRQMIEQGLLPSTYEFNLVIKG 373
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++F Y L+ CK + + + + +M ++ I+PN +TYTI+ID C N +
Sbjct: 691 EGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNC-IQPNKITYTIMIDGYCKMGNTK 749
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L++ + +G PD Y + KGY
Sbjct: 750 EATKLLNEMIANGISPDTVTYTVLQKGY 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK L F +M + + P+LVTY IL++ + + EA
Sbjct: 274 PNVVTYNNLIDGLCKSGRLEEALMFKGRMVEN-KVNPSLVTYGILVNGLVKFEKFDEANS 332
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + GF P+ FV+N ++ GY
Sbjct: 333 VLVEMYSKGFSPNEFVFNALIDGY 356
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L++ ++ YN L+ K + T + D MR+S I P + TY+ +I +C
Sbjct: 618 LVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSS-NIHPTIFTYSSIIHGMCCND 676
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + + G P+ F Y ++ GY
Sbjct: 677 LVEEAKGIFEEMRNEGLMPNVFCYTALIGGY 707
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + T N L+ LC+ ++ V+ +M G+ + ++Y LI C + +
Sbjct: 481 KGLAANTTTSNALLYGLCERGNMEEVFPVCKEM-VERGLVLDGISYNTLIFGCCKSGKIE 539
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + GFKPD + YN +MKG
Sbjct: 540 EAFKLKEKMMKQGFKPDTYTYNFLMKG 566
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P + TY LV L K + + +M S G PN + LID
Sbjct: 302 MVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMY-SKGFSPNEFVFNALIDGYSRKG 360
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ +A+R+ ++ G KP+ +NT+++G+
Sbjct: 361 NMDDALRVRDDMTLKGLKPNAVTHNTLLQGF 391
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD +TYNFL+K L + V + + + G+ PN+ TY ++++ CN +
Sbjct: 551 QGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDH-GVVPNIYTYALMLEGYCNADRID 609
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L + L + + VYN ++ +
Sbjct: 610 NAVSLFNKLVYNKVELSYVVYNILIAAH 637
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++TY + CK + +M G+ PN+VTY LID +C + L EA+
Sbjct: 240 DVYTYATAINAYCKGGKIDEAVGLFLKMGEG-GVLPNVVTYNNLIDGLCKSGRLEEALMF 298
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ ++ P Y ++ G
Sbjct: 299 KGRMVENKVNPSLVTYGILVNG 320
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L D +YN L+ CK + + ++M G KP+ TY L+ + +
Sbjct: 513 MVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQ-GFKPDTYTYNFLMKGLADKG 571
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + R++ D G P+ + Y +++GY
Sbjct: 572 KMDDVGRVLHEAKDHGVVPNIYTYALMLEGY 602
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + + NFL+ L K L + D M G+ ++ TY I+ C +
Sbjct: 200 KGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAM-CRGGVLIDVYTYATAINAYCKGGKID 258
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + + G P+ YN ++ G
Sbjct: 259 EAVGLFLKMGEGGVLPNVVTYNNLIDG 285
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TY ++ CK + +++M A+ GI P+ VTYT+L C L E
Sbjct: 728 IQPNKITYTIMIDGYCKMGNTKEATKLLNEMIAN-GISPDTVTYTVLQKGYCKENELEET 786
Query: 66 MRLVSAL 72
++ +A+
Sbjct: 787 LQGDTAV 793
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ CK L Y+ ++QM G+ PN+VT+T L+D +C L +A+
Sbjct: 193 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK-GLTPNVVTFTSLMDGLCRENRLSDAVH 251
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + P + YNTI+ GY
Sbjct: 252 ILGEMRRKSCSPTVYTYNTILDGY 275
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PD+ TY+ L+ LCK L + +M S PN VTY LI C
Sbjct: 115 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 174
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EAM L+ ++++G PD Y T+M G+
Sbjct: 175 KMDEAMNLLERMAETGSSPDVVTYTTLMNGF 205
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN L+ LCK + Y+ +++M S G P++ TYT LI C +K +A+R
Sbjct: 52 PTAVTYNSLISGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALR 110
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L GF+PD Y+ ++ G
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDG 133
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+++ PDIFTY L+ CK + +Q+ A G +P++VTY+ LID +C
Sbjct: 80 MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEG 138
Query: 61 NLREAMRLVSALSDSGF-KPDCFVYNTIMKGY 91
L+EA+ L + SG P+ YN+++ G+
Sbjct: 139 RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ ++N +++ LCK + V++ R P++V YT +ID +C K + EA
Sbjct: 295 PPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR-CNPDVVMYTTVIDVLCREKKVDEAC 353
Query: 67 RLV-SALSDSGFKPDCFVYNT 86
R+ L + G P+ Y+T
Sbjct: 354 RVYRKMLEEPGCLPNSITYST 374
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P ++TYN ++ C+ L F M + PN+V++ I+I +C
Sbjct: 259 KSCSPTVYTYNTILDGYCRVNQLEEARKF---MLEEMDCPPNVVSFNIMIRGLCKVNRSS 315
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM LV PD +Y T++
Sbjct: 316 EAMELVEEARRRRCNPDVVMYTTVI 340
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ T+ L+ LC+ L+ + + +MR P + TY ++D C L
Sbjct: 224 KGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRK-SCSPTVYTYNTILDGYCRVNQLE 282
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + L + P+ +N +++G
Sbjct: 283 EARKFM--LEEMDCPPNVVSFNIMIRG 307
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
P VTY LI +C + EA L+ + SG PD F Y T++ G+
Sbjct: 52 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGF 99
>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
Length = 695
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD + Y+ L+ LCK R +MR GI P +VTY L++ + +T
Sbjct: 281 MMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGR-GISPTVVTYNTLLEGLLSTA 339
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L++AM L + D G PD YN +++G+
Sbjct: 340 KLQDAMELTYFMLDQGRLPDTCSYNLMIRGF 370
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ YN L+ CLCK L +++ +M PN+V+Y I+ID C +N+ +A
Sbjct: 6 LFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCA--PNVVSYNIIIDGYCKARNIEKA 63
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + G P Y++I++ +
Sbjct: 64 LAFLREMEELGHPPTPHAYSSIVQSF 89
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK---PNLVTYTILIDNVCNTKNLREA 65
+ +TYNF++ K + ++ + +M++ K PN+ TY ILI ++C T + EA
Sbjct: 394 NTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEA 453
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+L+SA+ D GF P ++ ++
Sbjct: 454 FKLLSAMRDKGFVPSLKIWEVLL 476
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP Y+ +V+ CK +++ + +M A G +P++V + +L+ + + + EA
Sbjct: 76 PPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAK-GCEPDIVNFNVLLSGLWRARKIHEAR 134
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L +++ G KPD YNT++ G
Sbjct: 135 ELFRSMNSRGCKPDVVTYNTMIAG 158
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 3 FKQLP----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
K++P P++ +YN ++ CK R++ F+ +M LG P Y+ ++ + C
Sbjct: 33 LKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREME-ELGHPPTPHAYSSIVQSFCK 91
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
T N+ +AM + + + G +PD +N ++ G
Sbjct: 92 TGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSG 123
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK + L +++M+ + P VTYT LID++C L++A
Sbjct: 147 PDVVTYNTMIAGLCKWKKLDEAVFLLERMKQE-DVSPTFVTYTTLIDHLCKFTRLQQAYE 205
Query: 68 LVSALSD 74
+ +++
Sbjct: 206 VFEKMAE 212
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F ++P PDI +N L+ L + R + M S G KP++VTY +I +
Sbjct: 101 VFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMN-SRGCKPDVVTYNTMIAGL 159
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C K L EA+ L+ + P Y T++
Sbjct: 160 CKWKKLDEAVFLLERMKQEDVSPTFVTYTTLI 191
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FTY L+ LCK + + + MR G P+L + +L+ + L +A
Sbjct: 432 PNMFTYEILISSLCKTDQVEEAFKLLSAMRDK-GFVPSLKIWEVLLSRLARAGRLDDAFE 490
Query: 68 LVSALS 73
L +S
Sbjct: 491 LYKEMS 496
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVTY I++D +N + A
Sbjct: 582 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEM-VDQGCTPNLVTYNIMMDLHAKARNYQNA 640
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 641 LKLYRDMQNAGFEPDKVTYSIVME 664
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ + L N +QM+ + G KP+ VTY LID L AM
Sbjct: 514 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEA-GCKPDRVTYCTLIDIHAKAGFLDIAMD 572
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD F Y+ I+
Sbjct: 573 MYQRMQAGGLSPDTFTYSVII 593
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +D+M G +PN VTY LI + L EAM +
Sbjct: 480 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRD-GCQPNTVTYNRLIHSYGRANYLNEAMNV 538
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G KPD Y T++
Sbjct: 539 FNQMQEAGCKPDRVTYCTLI 558
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+ PD TY L+ K L + +M+A G+ P+ TY+++I+ +
Sbjct: 538 VFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCL 596
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L A +L + D G P+ YN +M
Sbjct: 597 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMM 628
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 619 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLEEAEA 677
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 678 VFTEMQQKNWIPDEPVYGLLV 698
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVTY I++D +N + A
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEM-VDQGCTPNLVTYNIMMDLHAKARNYQNA 523
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 524 LKLYRDMQNAGFEPDKVTYSIVME 547
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ + L N +QM+ + G KP+ VTY LID L AM
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEA-GCKPDRVTYCTLIDIHAKAGFLDIAMD 455
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD F Y+ I+
Sbjct: 456 MYQRMQAGGLSPDTFTYSVII 476
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +D+M G +PN VTY LI + L EAM +
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRD-GCQPNTVTYNRLIHSYGRANYLNEAMNV 421
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G KPD Y T++
Sbjct: 422 FNQMQEAGCKPDRVTYCTLI 441
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+ PD TY L+ K L + +M+A G+ P+ TY+++I+ +
Sbjct: 421 VFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCL 479
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L A +L + D G P+ YN +M
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMM 511
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLEEAEA 560
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 561 VFTEMQQKNWIPDEPVYGLLV 581
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLT-TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P+ T+ L+ CK + + NF QM + G++P+LVTY LI+ +C +L
Sbjct: 241 KGLVPNGVTFTVLIDGQCKGGKVDLALKNF--QMMLAQGVRPDLVTYNALINGLCKVGDL 298
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA RLV+ +S SG +PD + T++ G
Sbjct: 299 KEARRLVNEMSASGLRPDRITFTTLIDG 326
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ TYN L+ LCK L V++M AS G++P+ +T+T LID C
Sbjct: 273 MLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSAS-GLRPDRITFTTLIDGCCKYG 331
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A+ + + + G + D + ++ G
Sbjct: 332 DMESALEIKRRMVEEGIELDDVAFTVLISG 361
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY +V C CK ++ + + +M++ G P +VTY L++ +C ++ A
Sbjct: 385 PDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSD-GHVPGVVTYNALMNGLCKQGQVKNAKM 443
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ A+ + G P+ YN +++G+
Sbjct: 444 LLDAMLNVGVAPNDITYNILLEGH 467
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ F +N L+ CK + + D++ G++P +V++ LI C + E
Sbjct: 139 PPNFFFFNVLMHGFCKVGGVGSARLVFDEI-PKRGLRPTVVSFNTLISGCCKAGAVEEGF 197
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + PD F ++ ++ G
Sbjct: 198 RLKGVMESERVCPDVFTFSALING 221
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + D + L+ LC+ + + M S G KP+ TYT+++D C
Sbjct: 343 MVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDM-LSAGFKPDDPTYTMVVDCFCKKG 401
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +L+ + G P YN +M G
Sbjct: 402 NVXMGFKLLKEMQSDGHVPGVVTYNALMNG 431
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVTY I++D +N + A
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEM-VDQGCTPNLVTYNIMMDLHAKARNYQNA 523
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 524 LKLYRDMQNAGFEPDKVTYSIVME 547
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ + L N +QM+ + G KP+ VTY LID L AM
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEA-GCKPDRVTYCTLIDIHAKAGFLDIAMD 455
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD F Y+ I+
Sbjct: 456 MYQRMQAGGLSPDTFTYSVII 476
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +D+M G +PN VTY LI + L EAM +
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRD-GCQPNTVTYNRLIHSYGRANYLNEAMNV 421
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G KPD Y T++
Sbjct: 422 FNQMQEAGCKPDRVTYCTLI 441
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+ PD TY L+ K L + +M+A G+ P+ TY+++I+ +
Sbjct: 421 VFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCL 479
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L A +L + D G P+ YN +M
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMM 511
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLEEAEA 560
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 561 VFTEMQQKNWIPDEPVYGLLV 581
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD FTY+ +++ LCK L + Q+R S G+K N++TY+++ID C + +A+
Sbjct: 70 PPDDFTYSIVLRGLCKAGELDKAKELLGQLRES-GVKLNVITYSVVIDGCCKASRVDDAL 128
Query: 67 RLVSALS-DSGFKPDCFVYNTIMKG 90
+ +S G PD +N+++KG
Sbjct: 129 EIFKTMSAGGGCVPDVVTFNSLLKG 153
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TYN +V LCK + L V++M A+ G+ P++VTY+ L+D +C L A
Sbjct: 336 PPNLETYNIMVDNLCKAKQLDEAQELVNEM-ANYGLSPDVVTYSALVDGLCKLGKLDRAC 394
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ +S G PD F +I+
Sbjct: 395 DLLEEMSKEGVFPDSFTDASIL 416
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA--SLGIKPNLVTYTILIDNVCN 58
+I + PP +N L+ +CK + L +M++ PNL TY I++DN+C
Sbjct: 292 MISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCK 351
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K L EA LV+ +++ G PD Y+ ++ G
Sbjct: 352 AKQLDEAQELVNEMANYGLSPDVVTYSALVDG 383
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+K LC ++ + + M A G +PN+++Y+ L+D +C L EA R
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYM-AKAGCEPNVISYSTLLDGLCKAGRLDEACR 200
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + PD Y + + G
Sbjct: 201 LWEEMVEKSCVPDLVAYTSFVTG 223
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK + F+ +M A+ P++ +YTI+I +C + A
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA-KCTPDVFSYTIIITALCRSGQAAGAHA 500
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G PD +Y++++ G
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDG 523
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TY+ ++ CK + M A G P++VT+ L+ +C+ + + EA L
Sbjct: 107 NVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVL 166
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ +G +P+ Y+T++ G
Sbjct: 167 FEYMAKAGCEPNVISYSTLLDG 188
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT ++ L K + + ++ M+A G P+LVTY L+D +C + EA+
Sbjct: 407 PDSFTDASILNALSKAGKVDYALSHLETMKAR-GSTPDLVTYNTLLDGLCKAGRIDEAIT 465
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + + PD F Y I+
Sbjct: 466 FLAKMVAAKCTPDVFSYTIII 486
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+FTYN + L K + Y QM+ G P+ TY+I++ +C L +A L+
Sbjct: 38 VFTYNCFLDALAKANAGQLAYEKFQQMQRR-GYPPDDFTYSIVLRGLCKAGELDKAKELL 96
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
L +SG K + Y+ ++ G
Sbjct: 97 GQLRESGVKLNVITYSVVIDG 117
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 33/122 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------------ 36
++ + PD+F+Y ++ LC+ + +M
Sbjct: 470 MVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL 529
Query: 37 --------RASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ SL KP+ V + +++D +C +A +V ++D+GF D F Y ++
Sbjct: 530 EDLALELLKTSL-CKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVV 588
Query: 89 KG 90
+G
Sbjct: 589 RG 590
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y+ L+ LCK L ++M + P+LV YT + +C + EA
Sbjct: 177 PNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV-PDLVAYTSFVTGLCKANRVAEACD 235
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ G K D ++T++
Sbjct: 236 CCRKMVTKGSKADAVAFSTVI 256
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ C L + +++M I PN+ TYTIL+D +C ++EA
Sbjct: 183 PNVITYSTLIYGFCLAGQLMEAFGLLNEMILK-NINPNVYTYTILMDALCKEGKVKEAKN 241
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ ++ G KP+ YNT+M GY
Sbjct: 242 LLAVMTKEGVKPNVVSYNTLMDGY 265
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+++TY L+ LCK + N + M G+KPN+V+Y L+D C
Sbjct: 211 MILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE-GVKPNVVSYNTLMDGYCLIG 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ A ++ + G P+ + YN ++
Sbjct: 270 EVQNAKQMFHTMVQKGVNPNVYSYNIMI 297
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TY+ L+ CK +T+ + + +M G ++VTYT L+D +C +
Sbjct: 316 VLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR-GQPADVVTYTSLLDALCKNQ 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL +A L + + G +P+ + Y ++ G
Sbjct: 375 NLDKATALFMKMKERGIQPNKYTYTALIDG 404
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TY L+ LCK ++L +M+ GI+PN TYT LID +C + A
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKER-GIQPNKYTYTALIDGLCKGGRHKNAQ 415
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L L G + + + YN ++ G
Sbjct: 416 KLFQHLLVKGCRINVWTYNVMISG 439
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T N L+K LC + +F D++ A G + + V+Y L++ +C R A++
Sbjct: 78 PNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQ-GFQMDQVSYATLLNGLCKIGETRSALK 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D +P+ +YNTI+ G
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDG 159
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+FT N L+ C C +T + + ++ LG +PN +T L+ +C ++
Sbjct: 39 KGIEPDLFTLNILINCFCHLGQMTFSFTVLGKI-LKLGYQPNTITLNTLMKGLCLKGEVK 97
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + GF+ D Y T++ G
Sbjct: 98 KSLHFHDKVVAQGFQMDQVSYATLLNG 124
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ +YN L+ C + M G+ PN+ +Y I+ID +C +K + EA
Sbjct: 251 VKPNVVSYNTLMDGYCLIGEVQNAKQMFHTM-VQKGVNPNVYSYNIMIDRLCKSKRVDEA 309
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M L+ + P+ Y++++ G+
Sbjct: 310 MNLLREVLHKNMVPNTVTYSSLIDGF 335
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PP I +N +V L K + T + QM+ GI+P+L T ILI+ C+
Sbjct: 2 LLVRDTPP-IMEFNKIVGSLVKMKHYPTAISLFKQMQVK-GIEPDLFTLNILINCFCHLG 59
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + ++ + G++P+ NT+MKG
Sbjct: 60 QMTFSFTVLGKILKLGYQPNTITLNTLMKG 89
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++++YN ++ LCK + + N + ++ + PN VTY+ LID C
Sbjct: 281 MVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHK-NMVPNTVTYSSLIDGFCKLG 339
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ L+ + G D Y +++
Sbjct: 340 RITSALDLLKEMYHRGQPADVVTYTSLL 367
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK + + +M +PN+V Y +ID +C K + EA L
Sbjct: 114 DQVSYATLLNGLCKIGETRSALKLL-RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDL 172
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + G P+ Y+T++ G+
Sbjct: 173 YSEMDARGIFPNVITYSTLIYGF 195
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ +TY L+ LCK + G + N+ TY ++I +C L
Sbjct: 389 RGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVK-GCRINVWTYNVMISGLCKEGMLD 447
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+ + S + ++G PD + I++
Sbjct: 448 EALAMKSKMEENGCIPDAVTFEIIIR 473
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L PDI TYN L+ +C+ L + D M S I PN VTY+ILID+ C
Sbjct: 112 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH-SREIFPNHVTYSILIDSHCEKG 170
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + + G P+ YN+I+KGY
Sbjct: 171 QVEDAFGFLDEMINKGILPNIMTYNSIIKGY 201
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK R L +++MR G+ P+L T+T LI C L +A++
Sbjct: 49 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRER-GVPPDLCTFTTLIHGYCIEGKLDKALQ 107
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + +PD YNT++ G
Sbjct: 108 LFDTMLNQRLRPDIVTYNTLIDG 130
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+ TY+ L+ C+ + + F+D+M + GI PN++TY +I C + N+
Sbjct: 150 REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEM-INKGILPNIMTYNSIIKGYCRSGNVS 208
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + + PD YNT++ GY
Sbjct: 209 KGQKFLQKMMVNKVSPDLITYNTLIHGY 236
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+I TYN ++K C+ +++ F+ +M + + P+L+TY LI
Sbjct: 182 MINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN-KVSPDLITYNTLIHGYIKED 240
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A +L++ + +PD YN ++ G+
Sbjct: 241 KMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 271
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y ++ C+ ++ D+M G P++VTY L++ +C + L +A
Sbjct: 12 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEM-VGCGCLPDVVTYNTLLNGLCKERRLLDA 70
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + G PD + T++ GY
Sbjct: 71 EGLLNEMRERGVPPDLCTFTTLIHGY 96
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ TYN L+ K + + ++ M ++P++VTY +LI+
Sbjct: 217 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE-KVQPDVVTYNMLINGFSVHG 275
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++EA + + G +PD + Y +++ G+
Sbjct: 276 NVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 306
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +MR G+ P+ V YT++I C + +A+R+ + G PD YNT++ G
Sbjct: 3 YLREMRC-FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TYN L+ ++ ++M A GI+P+ TY +I+ N +
Sbjct: 255 EKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK-GIEPDRYTYMSMINGHVTAGNSK 313
Query: 64 EAMRLVSALSDSGFKPD 80
EA +L + GF PD
Sbjct: 314 EAFQLHDEMLQRGFAPD 330
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I TYN L+ LC+ L VDQM++ GI PNL+TY LID C L +A+ L
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSD-GINPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L G P YN ++ G+
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGF 383
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + TYN LV C+ + V +M GIKP+ VTYTILID + N+
Sbjct: 367 RGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEER-GIKPSKVTYTILIDTFARSDNME 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L ++ + G PD Y+ ++ G+
Sbjct: 426 KAIQLRLSMEELGLVPDVHTYSVLIHGF 453
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ LCK + D+MR G+ N+VTY LI +C L EA +
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRER-GVSCNIVTYNTLIGGLCREMKLNEANK 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + G P+ YNT++ G+
Sbjct: 325 VVDQMKSDGINPNLITYNTLIDGF 348
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C L + ++ S G+ P+LVTY IL+ C + A +
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLK-SRGLSPSLVTYNILVSGFCRKGDTSGAAK 394
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V + + G KP Y ++
Sbjct: 395 MVKEMEERGIKPSKVTYTILI 415
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P TY L+ + ++ M LG+ P++ TY++LI C +
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQLRLSME-ELGLVPDVHTYSVLIHGFCIKGQMN 460
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL ++ + +P+ +YNT++ GY
Sbjct: 461 EASRLFKSMVEKNCEPNEVIYNTMILGY 488
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ YN ++ CK S + +M + PN+ +Y +I+ +C +
Sbjct: 469 MVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEK-ELAPNVASYRYMIEVLCKER 527
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA RLV + DSG P + + I +
Sbjct: 528 KSKEAERLVEKMIDSGIDPSTSILSLISRA 557
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++++ L+K C+ + ++ + ++ G PN+V YT LID C + +A L
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIEL-TEFGFSPNVVIYTTLIDGCCKKGEIEKAKDL 220
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G + Y ++ G
Sbjct: 221 FFEMGKLGLVANERTYTVLING 242
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y L+ CK + + +M LG+ N TYT+LI+ + ++
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEM-GKLGLVANERTYTVLINGLFKNGVKKQGFE 254
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + G P+ + YN +M
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVM 275
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L+ L K + ++M+ G+ PNL TY +++ +C ++A ++
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQED-GVFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ + G + YNT++ G
Sbjct: 294 MRERGVSCNIVTYNTLIGG 312
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N+L+ + S ++F ++ ++ + + ++ ++ ILI C + ++ L+ L
Sbjct: 132 FNYLLTFVVGSSSFNQWWSFFNENKSKVVL--DVYSFGILIKGCCEAGEIEKSFDLLIEL 189
Query: 73 SDSGFKPDCFVYNTIMKG 90
++ GF P+ +Y T++ G
Sbjct: 190 TEFGFSPNVVIYTTLIDG 207
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT+N L+ LCK + + + V+ M A+ G PNL+TYT L+D C L EA
Sbjct: 378 PDVFTFNTLIHGLCKKGLMGSAVDMVNDMSAN-GCTPNLITYTTLLDGFCKKNQLEEAGY 436
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ +S GF+ + YN +++
Sbjct: 437 VLNEMSAKGFELNIMGYNVLLRA 459
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
++ K L P + N L+ LC+ C +L + + + + G+ P++VTY LI+ +
Sbjct: 581 MVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHR-----GLAPDVVTYNSLINGL 635
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C N+REA L + L G +PD YNT++
Sbjct: 636 CKMGNIREAFNLFNKLQAEGIQPDAITYNTLI 667
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD+ TYN L+ LCK ++ +N ++++A GI+P+ +TY LI C
Sbjct: 616 MIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAE-GIQPDAITYNTLICWHCRAG 674
Query: 61 NLREAMRLVSALSDSGFKPD 80
+A L+ ++ F P+
Sbjct: 675 MFDDAYLLLLRGVENAFIPN 694
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P D TYN L+K CK + D+M + P+ ++ +LI+ +C
Sbjct: 546 MLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEM-VRKDLVPSNISCNLLINGLCRVG 604
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L+ + G PD YN+++ G
Sbjct: 605 KVCNALELLRDMIHRGLAPDVVTYNSLING 634
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDIFT+N L+ LCK M G+ N VTY LI ++
Sbjct: 479 KGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLD-GVIANTVTYNTLIHAFLRGGAIQ 537
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++LV+ + G D YN ++K +
Sbjct: 538 EALKLVNDMLFRGCPLDEITYNGLIKAF 565
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P+ TY L+ LC+ + ++++ PN V +TILI+ +
Sbjct: 304 MLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT-----PNDVHFTILINGYVKSG 358
Query: 61 NLREAMR-LVSALSDSGFKPDCFVYNTIMKG 90
L EA L + +G +PD F +NT++ G
Sbjct: 359 RLDEANAFLYDKMIKNGCRPDVFTFNTLIHG 389
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P ++T+ ++K LC + + + M G PN V Y LI +
Sbjct: 199 MLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKH-GCVPNSVVYQTLIHALSKRD 257
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L+ + G PD +N ++ G
Sbjct: 258 RVNEALKLLEEMFLMGCLPDVDTFNDVIYG 287
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ L K + +++M +G P++ T+ +I +C + E +
Sbjct: 241 PNSVVYQTLIHALSKRDRVNEALKLLEEMFL-MGCLPDVDTFNDVIYGLCRLNRIHEGAK 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + GF P+ Y +M G
Sbjct: 300 LVDRMLFRGFTPNDITYGVLMNG 322
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ + L+ LCK T V M G++PN+VTY +LI+++C ++R
Sbjct: 222 RGIKPDVIMFTGLIDDLCK-EGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVR 280
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + D G PD YNT++ G
Sbjct: 281 EALTLRKEMDDKGVAPDVVTYNTLIAG 307
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N ++ LCK +T V +M A G NLVTY LI ++ AM
Sbjct: 333 PDVVTFNSVIHGLCKIGRMTQAVK-VREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMN 391
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ L+ SG +PD F Y+ ++ G+
Sbjct: 392 LMDELAISGLEPDSFTYSILINGF 415
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y+ ++ CK + TV + M G+ P+ VTY++LI+ +L EA R+
Sbjct: 473 DAIAYSTMIHGACKSGDMKTVKQLIQDMLDE-GLAPDAVTYSMLINMYAKLGDLEEAERV 531
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ ++ SGF PD V+++++KGY
Sbjct: 532 LKQMTASGFVPDVAVFDSLIKGY 554
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y +++ LC R + M+AS G++ ++VTY LI +C+ L A+
Sbjct: 121 PNAVSYTTVMRGLCASRRTGEAVALLRSMQAS-GVRADVVTYGTLIRGLCDASELDAALE 179
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + SG +P+ VY+ +++GY
Sbjct: 180 LLDEMCGSGVQPNVVVYSCLLRGY 203
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TYN L+ LCK S+ +M G+ P++VTY LI +
Sbjct: 254 MVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDK-GVAPDVVTYNTLIAGLSGVL 312
Query: 61 NLREAMRLVSAL--SDSGFKPDCFVYNTIMKG 90
+ EAM + + D+ +PD +N+++ G
Sbjct: 313 EMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHG 344
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L++ LC L +D+M S G++PN+V Y+ L+ C + ++ ++
Sbjct: 157 DVVTYGTLIRGLCDASELDAALELLDEMCGS-GVQPNVVVYSCLLRGYCRSGRWQDVGKV 215
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+S G KPD ++ ++
Sbjct: 216 FEDMSRRGIKPDVIMFTGLI 235
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 9 DIFTYNFLVKCLCK--------CRSLTTVYNFVDQMR-ASLGIKPNLVTYTILIDNVCNT 59
D +YN ++ LC+ RSL VD R A +PN V+YT ++ +C +
Sbjct: 82 DAVSYNTVLAALCRRGGDHLRQARSL-----LVDMSREAHPAARPNAVSYTTVMRGLCAS 136
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ L+ ++ SG + D Y T+++G
Sbjct: 137 RRTGEAVALLRSMQASGVRADVVTYGTLIRG 167
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
K + PD+ TYN L+ L + +F+++M + ++P++VT+ +I +C +
Sbjct: 292 KGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRM 351
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+++ +++ G + YN ++ G+
Sbjct: 352 TQAVKVREMMAERGCMCNLVTYNYLIGGF 380
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y+ L++ C+ V + M + GIKP+++ +T LID++C +A +
Sbjct: 191 PNVVVYSCLLRGYCRSGRWQDVGKVFEDM-SRRGIKPDVIMFTGLIDDLCKEGKTGKAAK 249
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +P+ YN ++
Sbjct: 250 VKDMMVQRGLEPNVVTYNVLI 270
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN+L+ + + N +D++ S G++P+ TY+ILI+ + A +
Sbjct: 369 NLVTYNYLIGGFLRVHKVKMAMNLMDELAIS-GLEPDSFTYSILINGFSKMWEVDRAEKF 427
Query: 69 VSALSDSGFKPDCFVY 84
+ + G K + F Y
Sbjct: 428 LCTMRQRGIKAELFHY 443
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L L PD FTY+ L+ K + F+ MR GIK L Y L+ +C
Sbjct: 396 LAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQR-GIKAELFHYIPLLAAMCQQG 454
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ AM L + + D D Y+T++ G
Sbjct: 455 MMERAMGLFNEM-DKNCGLDAIAYSTMIHG 483
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 7 PPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD+ TYN L+ LCK R L + V M+ G+KPN+VTY ++D C N+ A
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKK--GVKPNIVTYNAMMDGYCLRNNVNVA 459
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + SG +PD YN ++ GY
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGY 485
Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD +T+N L+ LCK + + M + G KP++VTY L++ C+ +
Sbjct: 256 MVRENVDPDDYTFNILIDALCKEGRILEAQGVL-AMMSKRGEKPDIVTYNALMEGYCSRE 314
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ EA L + + G +PD YN ++ GY
Sbjct: 315 NVHEARELFNRMVKRGLEPDVLNYNVLIDGY 345
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PDI YN L+ CK + +MR + P++ +Y LID +CN
Sbjct: 466 MVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHK-NLIPDIASYNSLIDGLCNLG 524
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ + DSG PD YN ++ +
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAF 555
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L++ C ++ ++M G++P+++ Y +LID C TK + EAM
Sbjct: 298 PDIVTYNALMEGYCSRENVHEARELFNRM-VKRGLEPDVLNYNVLIDGYCKTKMVDEAMV 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L + P YN+++ G
Sbjct: 357 LFKELCNKNLVPTIASYNSLIDG 379
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTY L+ L K + + + +M S ++PNLV Y+ LID +C + +A+ L
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKS-SVQPNLVMYSALIDGLCKDGFVSDALGL 217
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
S + + G D YN+++ G
Sbjct: 218 CSQIGERGILLDAVTYNSLIDG 239
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I + + PD +T + +V LCK L + + + G PN+ TYTILI+ +C +
Sbjct: 571 IVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMH-GCSPNVQTYTILINALCKDGS 629
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
EAM L+S + D+ PD + I+
Sbjct: 630 FGEAMLLLSKMEDNDRPPDAITFEIII 656
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI +YN L+ LC + V +D+M S G P+++TY IL+D C T+
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDS-GQSPDVITYNILLDAFCKTQPFD 562
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L + + G PD + + I+
Sbjct: 563 KAISLFRQIVE-GIWPDFYTNHAIV 586
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+I TYN ++ C ++ + ++M S G++P+++ Y +LI+ C T+
Sbjct: 431 MMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDILNYNVLINGYCKTE 489
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ L + PD YN+++ G
Sbjct: 490 MVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ YN L+ CK + + ++ + + P + +Y LID +CN+
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL-CNKNLVPTIASYNSLIDGLCNSG 384
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +L+ + S PD YN ++
Sbjct: 385 RISHVKKLLDEMHGSAQPPDVVTYNILI 412
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP ++ L+ + + T + Q++ S GI P++ T+TILI+ + + A
Sbjct: 52 PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQ-SKGISPSIATFTILINCYFHQSHTAFAF 110
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + SG++P+ +NTI+ G+
Sbjct: 111 SLLATILKSGYQPNLVTFNTIINGF 135
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ CK + + Q+ GI P+ T ++DN+C + L+ A
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQIVE--GIWPDFYTNHAIVDNLCKGEKLKMAED 600
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L G P+ Y ++
Sbjct: 601 ALKHLLMHGCSPNVQTYTILINA 623
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y+ L+ LCK ++ Q+ GI + VTY LID C+ +E +
Sbjct: 193 PNLVMYSALIDGLCKDGFVSDALGLCSQI-GERGILLDAVTYNSLIDGCCSVGRWQEVTQ 251
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + PD + +N ++
Sbjct: 252 LLTKMVRENVDPDDYTFNILI 272
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I T+ L+ C ++ + + S G +PNLVT+ +I+ C +
Sbjct: 84 KGISPSIATFTILINCYFHQSHTAFAFSLLATILKS-GYQPNLVTFNTIINGFCINGMIF 142
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L G+ D F Y T++ G
Sbjct: 143 KALDFCQNLLAQGYLFDQFTYGTLING 169
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+FTYN ++ LC + +D M + G P++VTY LI+ C TK
Sbjct: 270 MIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLM-VTKGCFPDVVTYNTLINGFCKTK 328
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E +LV +S G D +NTI++GY
Sbjct: 329 RVDEGTKLVREMSQRGLVVDTVTFNTIIQGY 359
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++TYN ++ CLC+C + V +M G +P++VT + LI+ C + A
Sbjct: 100 IGHDLYTYNIVINCLCRCSRFVIALSVVGKM-MKFGYEPDVVTVSSLINGFCQGNRVFGA 158
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ LVS + + K D +YNTI+ G+
Sbjct: 159 VDLVSKMEEMRCKLDVVIYNTIIDGF 184
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TY+ L+ LC + + M+ S ++ ++ TY I+I +C N+ +A
Sbjct: 379 PNIRTYSILLYGLCYNWRVEKALVLFESMQKS-EMELDITTYNIVIHGMCMIGNVEDAWD 437
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +LS G +PD Y T++ G+
Sbjct: 438 LFCSLSFKGLEPDVVTYTTMISGF 461
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 31/121 (25%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR----------------------- 37
++ K PD+ TYN L+ CK + + V +M
Sbjct: 305 MVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGR 364
Query: 38 --------ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +G +PN+ TY+IL+ +C + +A+ L ++ S + D YN ++
Sbjct: 365 PDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIH 424
Query: 90 G 90
G
Sbjct: 425 G 425
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D TYN LV LC + + M I PN++T+T LI+ EA +
Sbjct: 207 ADTVTYNSLVTGLCCSGRRSDAARLMRDM-VMRDIVPNVITFTALINAFVREGKFLEAKK 265
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ PD F YN+++ G
Sbjct: 266 FYEEMIRRCIDPDVFTYNSMIHG 288
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K ++ V + M GI +L TY I+I+ +C A+
Sbjct: 67 PSIVEFSKLLSNIAKSKNYDLVISLFHNMEIC-GIGHDLYTYNIVINCLCRCSRFVIALS 125
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + G++PD ++++ G+
Sbjct: 126 VVGKMMKFGYEPDVVTVSSLINGF 149
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ CK + +D+MR G KP++VTY +LI+ +C L EA+R
Sbjct: 245 PDVITYTILIEATCKESGVGQAMKLLDEMRDK-GCKPDVVTYNVLINGICKEGRLDEAIR 303
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + G +P+ +N I++
Sbjct: 304 FLNHMPSYGCQPNVITHNIILR 325
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVD-QMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD+ TYN +++ LC L +D QM+ P+++TYTILI+ C +
Sbjct: 207 SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRE--CYPDVITYTILIEATCKESGVG 264
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM+L+ + D G KPD YN ++ G
Sbjct: 265 QAMKLLDEMRDKGCKPDVVTYNVLING 291
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + ++Q+ S G P L+TY +ID + +A++
Sbjct: 420 PDIVTYNTLLTALCKDGKVDVAVEILNQL-GSKGCSPVLITYNTVIDGLSKVGKTDDAIK 478
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G KPD Y+T++ G
Sbjct: 479 LLDEMKGKGLKPDIITYSTLVGG 501
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TYN ++ L K +D+M+ G+KP+++TY+ L+ + +
Sbjct: 451 KGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGK-GLKPDIITYSTLVGGLSREGKVD 509
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + G KP+ YN+IM G
Sbjct: 510 EAIAFFHDLEEMGVKPNAITYNSIMLG 536
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TYN L+ +CK L F++ M S G +PN++T+ I++ ++C+T
Sbjct: 276 KGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM-PSYGCQPNVITHNIILRSMCSTGRWM 334
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A + ++ + G P +N ++
Sbjct: 335 DAEKFLAEMIRKGCSPSVVTFNILI 359
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+ +++P P+ +YN L+ LCK + + ++D M S G P++VTY L+ +
Sbjct: 374 VLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM-VSRGCYPDIVTYNTLLTAL 432
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A+ +++ L G P YNT++ G
Sbjct: 433 CKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDG 466
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI L++ LCK ++ + S G P+++TY +LI C T + A++
Sbjct: 143 PDIIACTSLIRGLCKTGKTWKATRVMEILEDS-GAVPDVITYNVLISGYCKTGEIGSALQ 201
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ +S S PD YNTI++
Sbjct: 202 LLDRMSVS---PDVVTYNTILR 220
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P + T+N L+ LC+ + + +++M G PN ++Y L+ +C K
Sbjct: 343 MIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKM-PQHGCTPNSLSYNPLLHALCKDK 401
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YNT++
Sbjct: 402 KMERAIEYLDIMVSRGCYPDIVTYNTLL 429
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI TY+ LV L + + F + +G+KPN +TY ++ +C +
Sbjct: 486 KGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLE-EMGVKPNAITYNSIMLGLCKARQTV 544
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + G KP Y +++G
Sbjct: 545 RAIDFLAYMVARGCKPTETSYMILIEG 571
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N ++ L + L + F++ M G P+++ T LI +C T +A R++ L
Sbjct: 114 NNHLRRLVRNGELEEGFKFLEDM-VCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILE 172
Query: 74 DSGFKPDCFVYNTIMKGY 91
DSG PD YN ++ GY
Sbjct: 173 DSGAVPDVITYNVLISGY 190
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK R +F+ M A G KP +Y ILI+ + +EA+
Sbjct: 525 PNAITYNSIMLGLCKARQTVRAIDFLAYMVAR-GCKPTETSYMILIEGLAYEGLAKEALE 583
Query: 68 LVSALSDSG 76
L++ L G
Sbjct: 584 LLNELCSRG 592
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK L F +M+ S G+KPN+V+Y+ L+D C +++A++
Sbjct: 201 PDVITYNSLINCFCKSGKLPKGLEFYREMKQS-GLKPNVVSYSTLVDAFCKEDMMQQAIK 259
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ G P+ F Y +++
Sbjct: 260 FYVDMRRVGHVPNEFTYTSLV 280
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY LV CK +L+ + ++M +G++ N+VTYT LID +C+ + ++EA +
Sbjct: 271 PNEFTYTSLVDANCKIGNLSDAFRLANEM-LEVGVEWNVVTYTALIDGLCDAERMKEAEK 329
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + +G P+ YN ++ G+
Sbjct: 330 LFGKMVTAGVIPNLASYNALIHGF 353
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ T+ L+ LCK + ++ ++ +M G++PN YT +ID +C ++ A L
Sbjct: 448 VVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLF 507
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
++ G PD Y ++M G
Sbjct: 508 EQMAQEGLVPDRTAYTSLMDG 528
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ L PD TYN ++ K L F ++M+ S+ +P+++TY LI+ C + L
Sbjct: 161 FRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMK-SMSCEPDVITYNSLINCFCKSGKL 219
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + SG KP+ Y+T++ +
Sbjct: 220 PKGLEFYREMKQSGLKPNVVSYSTLVDAF 248
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TY L+ LC + +M + G+ PNL +Y LI KN+ A+ L
Sbjct: 307 NVVTYTALIDGLCDAERMKEAEKLFGKM-VTAGVIPNLASYNALIHGFVKAKNMDRALEL 365
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ L G +PD +Y T + G
Sbjct: 366 LNELKGRGIQPDLLLYGTFIWG 387
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN L+ K +++ +++++ GI+P+L+ Y I +C + + A
Sbjct: 341 PNLASYNALIHGFVKAKNMDRALELLNELKGR-GIQPDLLLYGTFIWGLCGLEKIEAAKV 399
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + ++G K + +Y T+M Y
Sbjct: 400 VMNEMQENGIKANTLIYTTLMDAY 423
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ Y ++ LCK + +QM A G+ P+ YT L+D N+ EA
Sbjct: 480 LQPNAAVYTAMIDGLCKENQVKAATTLFEQM-AQEGLVPDRTAYTSLMDGNLKQGNMLEA 538
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L +++ G K D Y +++ G+
Sbjct: 539 LALRDKMAEIGMKLDLLAYTSLVWGF 564
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+ K V F M + G KP + TY I+ID + ++ A
Sbjct: 96 PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGA-GSKPTVFTYNIMIDCMWKEGDIEAARG 154
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YN+++ GY
Sbjct: 155 LFEEMKFRGLIPDTVTYNSMIDGY 178
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P+ TY+ L+ LC L ++M A G PNLVTY+IL+D +C L
Sbjct: 330 QELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVAC-GQIPNLVTYSILLDYLCKNHRLA 388
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ A+ S PD VYN + G
Sbjct: 389 EAMALLKAIEGSNLDPDVQVYNIAIDG 415
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PDIFTYN L+ LC V +++M S I PN+V+ I++D +C
Sbjct: 187 MIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKS-KIMPNVVSLNIVVDALCKEG 245
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +PD Y +M G+
Sbjct: 246 KVTEAHDVVDMMIQGGVEPDVVTYAALMDGH 276
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ LV+ LC + + D+M G +PN+VTY L++ +C + L EA+
Sbjct: 124 PDTATFTTLVRGLCVVGKIGEALDVFDKMVGE-GFQPNVVTYGTLMNGLCKDRQLTEALN 182
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S + G PD F YN+++
Sbjct: 183 LFSEMIAKGISPDIFTYNSLIHA 205
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ + N +V LCK +T ++ VD M G++P++VTY L+D C
Sbjct: 222 MVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQG-GVEPDVVTYAALMDGHCLRS 280
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + +G + YNT++ GY
Sbjct: 281 EMDEAVKVFDMMVRNGCVCNVVSYNTLINGY 311
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK L + + S + P++ Y I ID +C +L A
Sbjct: 369 PNLVTYSILLDYLCKNHRLAEAMALLKAIEGS-NLDPDVQVYNIAIDGMCRAGDLEAARD 427
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L+ G +PD + +N +++G
Sbjct: 428 LFSNLAPRGLQPDVWTHNIMIRG 450
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T ++ C + + + ++ LG +P+ T+T L+ +C + EA
Sbjct: 87 IPPDVYTLTIVINSFCHLNRVDFALSVLAKI-LKLGHQPDTATFTTLVRGLCVVGKIGEA 145
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + GF+P+ Y T+M G
Sbjct: 146 LDVFDKMVGEGFQPNVVTYGTLMNG 170
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ YN + +C+ L + + A G++P++ T+ I+I +C L EA
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNL-APRGLQPDVWTHNIMIRGLCKRGLLDEA 460
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + ++G + YNTI +G
Sbjct: 461 SKLFREMDENGCLRNGCTYNTITQG 485
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY L+ C + D M + G N+V+Y LI+ C +
Sbjct: 257 MIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRN-GCVCNVVSYNTLINGYCKIQ 315
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + P+ Y+T++ G
Sbjct: 316 RIDKAMYLFEEMCRQELIPNTMTYSTLIHG 345
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y+ ++ LCK + + Y + +MRA +G PN+VTY+ LID +C + EA
Sbjct: 106 PDVISYSTVIDALCKAQRVDKAYEYFKRMRA-VGCAPNVVTYSSLIDGLCKVDRVDEAYS 164
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ L P YN ++ G+
Sbjct: 165 LLMQLKGEDMVPRAMYYNAVVNGF 188
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR----ASLGIKPNLVTYTILIDNVCNT 59
++ P++ TYN +V LCK + D M AS G +P++++Y+ +ID +C
Sbjct: 62 EECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKA 121
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + +A + G P+ Y++++ G
Sbjct: 122 QRVDKAYEYFKRMRAVGCAPNVVTYSSLIDG 152
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY +++ LC + + ++M AS G P LVTYT+LI C+
Sbjct: 468 MVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKM-ASRGCAPGLVTYTLLIGEACSAD 526
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
+A R+ A+ +GF P T+
Sbjct: 527 MADDAFRIFEAMVAAGFTPQAQTMRTL 553
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I +N ++ L K F +++ S G KPN+VTY + + +C + EA R+
Sbjct: 212 NIIDFNAMLHALWKNDEQEKACQFFERLLKS-GKKPNVVTYNVAVHGLCKAGKVDEAYRI 270
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +S PD Y++I+ G+
Sbjct: 271 LLEMVESKVTPDVITYSSIIDGF 293
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ TY+ ++ CK + + +M I P+ VT+ L+ K
Sbjct: 274 MVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECI-PHPVTFMTLLHGFSEHK 332
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
REA R+ + ++GF P YN +M
Sbjct: 333 KSREAFRVHEDMVNAGFIPGLQTYNVLM 360
Score = 37.7 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD TY L++CLC+ R + F+D M A + PN L++ +C +
Sbjct: 382 KKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEAD-NVVPNGAICHALVEVLCKQGEVD 440
Query: 64 EA 65
EA
Sbjct: 441 EA 442
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++ CK + + +D+M+ G+K +++ ++ LI +C + EA+ ++
Sbjct: 2 YTTVINGFCKAGQVDQAFELLDEMKER-GVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60
Query: 73 SDSGFKPDCFVYNTIMKG 90
+ P+ YNT++ G
Sbjct: 61 GEE-CSPNVITYNTVVNG 77
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ C+C S+ + +M+ +P+ TY LI +C + + EA
Sbjct: 351 PGLQTYNVLMDCVCGADSVESALEIYHKMKRK-KRQPDANTYAPLIQCLCRARRVDEAKE 409
Query: 68 LVSALSDSGFKPD 80
+ + P+
Sbjct: 410 FLDVMEADNVVPN 422
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L+ LCK + D+M + G+ PN VT+T LID C T ++ A
Sbjct: 202 IQPDVYTYSVLINGLCKESKMNDANELFDEMIGN-GLVPNGVTFTTLIDGHCKTGSIDLA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + GF PD YNT++ G
Sbjct: 261 MEAYKEMLRQGFSPDLITYNTLIYG 285
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK L + +D+M G+KP+ +TYT LID C +L A +
Sbjct: 274 PDLITYNTLIYGLCKEGDLKQAQDLIDEMSMK-GLKPDKITYTTLIDGSCKEGDLETAFK 332
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D Y ++ G
Sbjct: 333 YKKRMIKENIRLDDVAYTALISG 355
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L P+ T+ L+ CK S+ +M G P+L+TY LI +C
Sbjct: 232 MIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQ-GFSPDLITYNTLIYGLCKEG 290
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L++A L+ +S G KPD Y T++ G
Sbjct: 291 DLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D++ G++P++V++ L++ +L E
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDEI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ SG +PD + Y+ ++ G
Sbjct: 192 RLKSAMHGSGIQPDVYTYSVLING 215
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ + L + M S GI+P++ TY++LI+ +C + +A
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGS-GIQPDVYTYSVLINGLCKESKMNDA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G P+ + T++ G+
Sbjct: 226 NELFDEMIGNGLVPNGVTFTTLIDGH 251
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL----VTYTILIDNVCNT 59
K L PD TY L+ CK L T + + +M IK N+ V YT LI +C
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFKYKKRM-----IKENIRLDDVAYTALISGLCRE 359
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +++ + G KPD Y I+ +
Sbjct: 360 GQSVGAEKMLREMLSVGLKPDNGTYTMIINEF 391
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD+ TYN ++ LCK +++ + M G+KP++VTY +ID +C +
Sbjct: 260 MIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHM-IDKGVKPDVVTYNTIIDGLCKAQ 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A ++ + D KPD YN ++ GY
Sbjct: 319 AVDRADGVLQHMIDKDVKPDIQTYNCLIHGY 349
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + D+ TY+ ++ LCK +++ + M G+KP++VTY +ID +C +
Sbjct: 225 MIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHM-IDKGVKPDVVTYNTIIDGLCKAQ 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + D G KPD YNTI+ G
Sbjct: 284 AVDRAEGVLQHMIDKGVKPDVVTYNTIIDG 313
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PDI TYN L+ V +++M A G+ P++VTY++L+D +C
Sbjct: 330 MIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYAR-GLDPDVVTYSLLLDYLCKNG 388
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G KP+ +Y ++ GY
Sbjct: 389 KCTEARKIFYCMIRKGIKPNVTIYGILLHGY 419
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++ +N ++ LC + +D M +G++PN+++Y LI C
Sbjct: 543 QGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSME-RVGVRPNVISYNTLIGGHCLAGRTD 601
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L+ + G KPD Y+T+++GY
Sbjct: 602 EAAQLLDVMVSVGLKPDLISYDTLLRGY 629
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TY L+ LCK + +QM + G+ PN V + L+ +C +A
Sbjct: 475 LSPDVVTYGILIDALCKLGRVDDAVLKFNQM-INDGVTPNSVVFNSLVYGLCTVDRWEKA 533
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + D G +P+ +NTIM
Sbjct: 534 EELFFEMWDQGVRPNVVFFNTIM 556
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ +Y+ L++ CK + Y +M G+ P VTY+ ++ + +T+ EA
Sbjct: 615 LKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRK-GVTPGAVTYSTILQGLFHTRRFSEA 673
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + SG + D + YN I+ G
Sbjct: 674 KELYLNMIKSGQQWDIYTYNIILNG 698
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKPNLVTYTILI 53
++ +++P P++ + N L+K LC + + + M G PN+VTY +I
Sbjct: 147 ILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTII 206
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
D +C + + A ++ + D G K D Y+TI+ G
Sbjct: 207 DGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDG 243
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN ++ LCK + + Q S ++PN++T+TI+ID + ++AM L
Sbjct: 688 DIYTYNIILNGLCKTNCVDEAFKIF-QSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDL 746
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+++ G P+ Y +MK
Sbjct: 747 FASIPSHGLVPNVVTYCIMMK 767
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ +N LV LC +M G++PN+V + ++ N+CN
Sbjct: 505 MINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQ-GVRPNVVFFNTIMCNLCNEG 563
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A RL+ ++ G +P+ YNT++ G+
Sbjct: 564 QVMVAQRLIDSMERVGVRPNVISYNTLIGGH 594
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN L+ C +D M S+G+KP+L++Y L+ C T + A
Sbjct: 582 PNVISYNTLIGGHCLAGRTDEAAQLLDVM-VSVGLKPDLISYDTLLRGYCKTGRIDNAYC 640
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P Y+TI++G
Sbjct: 641 LFREMLRKGVTPGAVTYSTILQG 663
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ LC + + + + + G PN+V+ L+ +CN K + EA+ L+ ++
Sbjct: 129 NQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMA 188
Query: 74 DSGFK---PDCFVYNTIMKG 90
+ G P+ YNTI+ G
Sbjct: 189 EDGGGNCTPNVVTYNTIIDG 208
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+I T+ ++ L K + + S G+ PN+VTY I++ N+ L
Sbjct: 718 KDLRPNIITFTIMIDVLFKGGRKKDAMDLFASI-PSHGLVPNVVTYCIMMKNIIQEGLLD 776
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
E L A+ SG PD + N I++
Sbjct: 777 EFDNLFLAMEKSGCTPDSVMLNAIIR 802
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L PD+ TY+ L+ LCK T F +R GIKPN+ Y IL+ +
Sbjct: 368 RGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRK--GIKPNVTIYGILLHGYAARGAI 425
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ + +G P+ +++N ++ Y
Sbjct: 426 ADLTDLLDLMVANGISPNNYIFNIVLCAY 454
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + +N ++ K + + +M + G+ P++VTY ILID +C
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRM-SQHGLSPDVVTYGILIDALCKLG 493
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + + + G P+ V+N+++ G
Sbjct: 494 RVDDAVLKFNQMINDGVTPNSVVFNSLVYG 523
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ TYN L+ C+ + V N +++M+ G+K + VTY ILI C K
Sbjct: 434 MLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCR-GVKADTVTYNILISAWCEKK 492
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++A RL+ + D G KP YN ++ GY
Sbjct: 493 EPKKAARLIDEMLDKGLKPSHLTYNILLNGY 523
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + TYN LV LC L +D+M +S +KPN++TY LI+ C K L
Sbjct: 332 QGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSS-NLKPNVITYNALINGYCKKKLLE 390
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + G P+ +NT++ GY
Sbjct: 391 EARELFDNIGKQGLTPNVITFNTLLHGY 418
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P+ T+N L+ CK +L+ ++M+ S G+KP +VTY L++ +CN
Sbjct: 294 MVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQ-SQGLKPTVVTYNSLVNGLCNEG 352
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA L+ + S KP+ YN ++ GY
Sbjct: 353 KLNEAKVLLDEMLSSNLKPNVITYNALINGY 383
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + D TYN L+ C+ + +D+M G+KP+ +TY IL++ C NLR
Sbjct: 472 RGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDK-GLKPSHLTYNILLNGYCMEGNLR 530
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L + G + YN +++GY
Sbjct: 531 AALNLRKQMEKEGRWANVVTYNVLIQGY 558
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P++ TYN L+ CK + L D + G+ PN++T+ L+ C
Sbjct: 364 MLSSNLKPNVITYNALINGYCKKKLLEEARELFDNI-GKQGLTPNVITFNTLLHGYCKFG 422
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L + + GF P+ YN ++ G+
Sbjct: 423 KMEEAFLLQKVMLEKGFLPNASTYNCLIVGF 453
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 37/127 (29%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA------------------SLG- 41
+I +++ P++ T+N ++ LCK L + VD M+ +G
Sbjct: 221 MIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGR 280
Query: 42 ------------------IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFV 83
+ PN VT+ +LID C +NL A+++ + G KP
Sbjct: 281 VGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVT 340
Query: 84 YNTIMKG 90
YN+++ G
Sbjct: 341 YNSLVNG 347
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P TYN L+ C +L N QM G N+VTY +LI C
Sbjct: 504 MLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKE-GRWANVVTYNVLIQGYCRKG 562
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
L +A L++ + + G P+ Y I
Sbjct: 563 KLEDANGLLNEMLEKGLIPNRTTYEII 589
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ + N L+ L K V FV + I PNL+T+ +I+ +C L +A +V
Sbjct: 195 VLSCNPLLSALVKENEFGGV-EFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVV 253
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ GF P+ YNT++ GY
Sbjct: 254 DDMKVWGFWPNVVTYNTLIDGY 275
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +N ++ CK + D M +G+KPN++TY+ LID C + EA +L
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPNIITYSTLIDGYCLAGKMDEATKL 536
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++++ G KPDC YNT++ GY
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGY 559
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K L Y +M GI PN+VTY +I +C + + +AM
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILPNVVTYNSIIAALCKAQAMDKAM 254
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++++ +G P+C YN+I+ GY
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN +V C F+ +M + G++P++VTY L+D +C EA +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGY 349
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+I TY+ L+ C + + M S+G+KP+ VTY LI+ C + +A
Sbjct: 510 VKPNIITYSTLIDGYCLAGKMDEATKLLASM-VSVGMKPDCVTYNTLINGYCKISRMEDA 568
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + SG PD YN I++G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQG 593
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ TYN ++ LCK +++ + M + G+ PN TY ++ C++
Sbjct: 225 MLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLM 311
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAA 603
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 604 KELYVGITESGTQLELSTYNIILHG 628
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + L+K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 117 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDEN 176
Query: 61 NLREAMRLVSALSDSGFK--PDCFVYNTIMKGY 91
+EA+ L+ + D G PD Y T++ G+
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ LCK T D M G+KP + TY L+ L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEM 358
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAY 384
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI PN ++ILI +
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVD 391
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G PD Y T++
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + ++ L+ K + +MR G+ P+ VTY +I +C +
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSG 423
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +AMR + D P VYN+++
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIH 452
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD TY ++ LCK + + +QM + P + Y LI ++C
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNIVYNSLIHSLCIFDKWD 461
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ + D G D +N+I+ +
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSH 489
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L P YN L+ LC + +M GI + + + +ID+ C
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM-LDRGICLDTIFFNSIIDSHCKEG 493
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KP+ Y+T++ GY
Sbjct: 494 RVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524
>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
Length = 321
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N ++ LCK Y +++ MR S+G+ P +VTY ILID C + L A+
Sbjct: 43 PNALVFNGIMDALCKEGRSAEAYGYIETMR-SMGVSPTIVTYNILIDGFCKEEKLHRALE 101
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G +P+ YNT + G
Sbjct: 102 ILQEMTGRGHEPNHVTYNTFLHG 124
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ D++ Y L+ LC+ L Y+ +D+M S G P Y ++ +C +
Sbjct: 144 KKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS-GCVPKPGCYNAILSWLCKGSRIN 202
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L ++ SG PD + ++ GY
Sbjct: 203 EAHKLFKRMTGSGILPDWLTFGMMVFGY 230
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ CK L + +M G +PN VTY + +C + +A+
Sbjct: 78 PTIVTYNILIDGFCKEEKLHRALEILQEMTGR-GHEPNHVTYNTFLHGLCKYGKVDDALA 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L A+++ + D + Y T++ G
Sbjct: 137 LFRAMTEKKIRLDVYGYTTLIDG 159
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+ LV LCK LT + V+ M A G PN + + ++D +C EA
Sbjct: 8 PTVVTFGILVDGLCKANRLTDAFELVEVM-AERGCFPNALVFNGIMDALCKEGRSAEAYG 66
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P YN ++ G+
Sbjct: 67 YIETMRSMGVSPTIVTYNILIDGF 90
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
A G P +VT+ IL+D +C L +A LV +++ G P+ V+N IM
Sbjct: 2 AEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIM 52
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN + LCK + M I+ ++ YT LID +C L EA
Sbjct: 113 PNHVTYNTFLHGLCKYGKVDDALALFRAMTEK-KIRLDVYGYTTLIDGLCQAGKLAEAYS 171
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +SG P YN I+
Sbjct: 172 LLDEMENSGCVPKPGCYNAIL 192
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD+ TYN L+ CK + V + M S I PN ++Y ILI+ CN
Sbjct: 368 MIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-ISRRIYPNHISYGILINGYCNMG 426
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL + + GF+ NTI+KGY
Sbjct: 427 CVSEAFRLWDEMVEKGFEATIITCNTIVKGY 457
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N ++ LCK + + +F+ M G+ P++VTY LI+ C L EA L
Sbjct: 96 NVYTLNIMINALCKNQKIENTKSFLSDMEEK-GVFPDVVTYNTLINAYCRQGLLEEAFEL 154
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ ++S G KP F YN I+ G
Sbjct: 155 MDSMSGKGLKPCVFTYNAIING 176
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K I T N +VK C+ + F+ M GI P+ +TY LI+ +
Sbjct: 438 MVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK-GIVPDGITYNTLINGFIKEE 496
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A LV+ + +SG PD YN I+ G+
Sbjct: 497 NMDRAFALVNKMENSGLLPDVITYNVILNGF 527
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P +FTYN ++ LCK +D+M +G+ P+ TY IL+ C N+
Sbjct: 161 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM-LKIGMSPDTATYNILLVECCRNDNMM 219
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A R+ + G PD ++ ++
Sbjct: 220 DAERIFDEMPSQGVVPDLVSFSALI 244
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN L+ C+ L + +D M G+KP + TY +I+ +C T
Sbjct: 126 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK-GLKPCVFTYNAIINGLCKTGKYL 184
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A ++ + G PD YN ++
Sbjct: 185 RAKGVLDEMLKIGMSPDTATYNILL 209
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TYN L+ K ++ + V++M S G+ P+++TY ++++
Sbjct: 473 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQG 531
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + + G PD Y +++ G+
Sbjct: 532 RMQEAELIMLKMIERGVNPDRSTYTSLINGH 562
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN ++ LCK + L+ +M G+ P+ T+T LI+ N+ +A+ L
Sbjct: 306 DVVTYNTILNGLCKEKMLSEADELFTEM-TERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ KPD YNT++ G+
Sbjct: 365 FEMMIQRNLKPDVVTYNTLIDGF 387
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF ++P PD+ +++ L+ L K L + M+ + G+ P+ V YTILI
Sbjct: 224 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDNVIYTILIGGF 282
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + EA+++ + + G D YNTI+ G
Sbjct: 283 CRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNG 316
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ C+ ++ D+M G ++VTY +++ +C K L EA
Sbjct: 268 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-GCVLDVVTYNTILNGLCKEKMLSEA 326
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +++ G PD + + T++ GY
Sbjct: 327 DELFTEMTERGVFPDFYTFTTLINGY 352
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ C+ ++ D+M S G+ P+LV+++ LI + L +A
Sbjct: 198 MSPDTATYNILLVECCRNDNMMDAERIFDEM-PSQGVVPDLVSFSALIGLLSKNGCLDQA 256
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G PD +Y ++ G+
Sbjct: 257 LKYFRDMKNAGLAPDNVIYTILIGGF 282
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN ++ + + + +M G+ P+ TYT LI+ NL+EA
Sbjct: 513 LLPDVITYNVILNGFSRQGRMQEAELIMLKM-IERGVNPDRSTYTSLINGHVTQNNLKEA 571
Query: 66 MRLVSALSDSGFKPD 80
R+ + GF PD
Sbjct: 572 FRVHDEMLQRGFVPD 586
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+ L+ K ++ + M +KP++VTY LID C + +
Sbjct: 340 PDFYTFTTLINGYSKDGNMNKAVTLFEMM-IQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 398
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + P+ Y ++ GY
Sbjct: 399 LWNDMISRRIYPNHISYGILINGY 422
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L K + + ++ S G++ N+ T I+I+ +C + + +S +
Sbjct: 66 NSLLGGLVKVGWVDLAWEIYQEVVRS-GVQVNVYTLNIMINALCKNQKIENTKSFLSDME 124
Query: 74 DSGFKPDCFVYNTIMKGY 91
+ G PD YNT++ Y
Sbjct: 125 EKGVFPDVVTYNTLINAY 142
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ +YN +++ C+ + L ++M+ S G +LVT+ ILID C + EA
Sbjct: 173 LMPDVVSYNTVIRGFCEGKELEKALQLANEMQGS-GCSWSLVTWGILIDAFCKAGKMDEA 231
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M L+ + G + D VY ++++G+
Sbjct: 232 MGLLKEMKHKGLEADLIVYTSLIRGF 257
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+LPP +F YN L+ LCK +L + ++M+ P+++++ I+ID ++
Sbjct: 522 LSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSF-PDVISFNIMIDGSLKAGDI 580
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+ A L+ +S +G PD F Y+ ++
Sbjct: 581 KSAESLLVGMSHAGLSPDLFTYSKLI 606
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN L++ CK L + M G++PN+ TYT LID +C +EA+
Sbjct: 279 SPCAITYNTLIRGFCKLGRLKEASEIFEFMMER-GVRPNVYTYTGLIDGLCGVGKTKEAL 337
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L++ + +P+ YN I+
Sbjct: 338 QLLNLMLQKDEEPNVVTYNIII 359
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ ++N L+ LCK L + D + LG ++VT IL+++ + ++ +AM
Sbjct: 422 PDVISFNALIHGLCKGNRLHQALDIYDLLVEKLG-AGDIVTTNILLNSTLKSGDVNKAME 480
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +S+S P+ Y T++ G+
Sbjct: 481 LWKQISNSKIVPNSDTYTTMIDGF 504
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ + + P+++TY L+ LC K + + N + Q +PN+VTY I+I+ +C
Sbjct: 308 MMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDE----EPNVVTYNIIINKLC 363
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +V + +PD YN+++ G
Sbjct: 364 KDSLVADALEIVELMKKRRTRPDNITYNSLLGG 396
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D+ Y L++ C C L D++ G P +TY LI C L+
Sbjct: 241 KGLEADLIVYTSLIRGFCDCGELDRGKALFDEV-LERGDSPCAITYNTLIRGFCKLGRLK 299
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + + G +P+ + Y ++ G
Sbjct: 300 EASEIFEFMMERGVRPNVYTYTGLIDG 326
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ TYN ++ LCK + V+ M+ +P+ +TY L+ +C
Sbjct: 343 MLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRR-TRPDNITYNSLLGGLCAKG 401
Query: 61 NLREAMRLVS-ALSDSGF-KPDCFVYNTIMKG 90
+L EA +L+ L DS + PD +N ++ G
Sbjct: 402 DLDEASKLLYLMLKDSSYTDPDVISFNALIHG 433
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K DI T N L+ K + Q+ S I PN TYT +ID C T
Sbjct: 450 LVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNS-KIVPNSDTYTTMIDGFCKTG 508
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A L+ + S P F YN ++
Sbjct: 509 MLNVAKGLLCKMRLSELPPSVFDYNCLL 536
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 4 KQLPPDIF----TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
K L D F + + L++C + R + + M G N+ Y IL+ +C
Sbjct: 97 KMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKR-GFAFNVYNYNILLKGLCRN 155
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L+ + + PD YNT+++G+
Sbjct: 156 LEFGKAVSLLREMRQNSLMPDVVSYNTVIRGF 187
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PD+ TY+ L+ LCK L + +M S PN VTY LI C
Sbjct: 176 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EAM L+ ++++G PD Y T+M G+
Sbjct: 236 KMDEAMNLLERMAETGSSPDVVTYTTLMNGF 266
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ CK L Y+ ++QM G+ P++VT+T L+D +C L +A+
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQM-TRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + P + YNTI+ GY
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGY 336
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ P TYN L+ LCK + Y+ +++M S G P++ TYT LI C +K
Sbjct: 109 KKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSD 167
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ L GF+PD Y+ ++ G
Sbjct: 168 DALRVFEQLVARGFRPDVVTYSCLIDG 194
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+++ PDIFTY L+ CK + +Q+ A G +P++VTY+ LID +C
Sbjct: 141 MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEG 199
Query: 61 NLREAMRLVSALSDSGF-KPDCFVYNTIMKGY 91
L+EA+ L + SG P+ YN+++ G+
Sbjct: 200 RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 231
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD++TY ++ LC L F+++M A+ + PN+VTYT+LID +C
Sbjct: 37 MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM-ANRNLTPNVVTYTVLIDGLCKGG 95
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ L+S + P YN+++ G
Sbjct: 96 RVDEAVALLSKMRKKCV-PTAVTYNSLISG 124
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ C+ + N +++M A G P++VTYT L++ C L +A
Sbjct: 219 PNTVTYNSLISGFCRMGKMDEAMNLLERM-AETGSSPDVVTYTTLMNGFCKLARLDDAYD 277
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ ++ G PD + ++M G
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDG 300
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ TY L+ LCK + + +MR P VTY LI +C +
Sbjct: 75 RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCKAERAS 132
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ + SG PD F Y T++ G+
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGF 160
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P ++TYN ++ C+ L F M + PN+V++ I+I +C
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKF---MLEEMDCPPNVVSFNIMIRGLCKVNRSS 376
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM LV PD +Y T++ G
Sbjct: 377 EAMELVEEARRRRCNPDVVMYTTVIDG 403
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L++ LCK + L F+ +M S G P++ TYT +I +C L EA +
Sbjct: 10 DFVTYTSLIQGLCKVKRLEQALIFLGKM-VSKGFHPDVYTYTAVIHALCVENRLHEARKF 68
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ +++ P+ Y ++ G
Sbjct: 69 LEEMANRNLTPNVVTYTVLIDG 90
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ T+ L+ LC+ L+ + + +MR P + TY ++D C L
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK-SCSPTVYTYNTILDGYCRANQLE 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + L + P+ +N +++G
Sbjct: 344 EARKFM--LEEMDCPPNVVSFNIMIRG 368
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 36 MRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
M A+ + VTYT LI +C K L +A+ + + GF PD + Y ++
Sbjct: 1 MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHA 55
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LC+ + + +M G PN +TY+ LI +CN L A
Sbjct: 392 PDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARG 451
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ YN ++ +
Sbjct: 452 YI----EKGCVPNIGTYNLLIDAF 471
>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + TYN L+ LCKC + NF QM S P+++TY L+ +C + EA+
Sbjct: 264 PPTVVTYNILINGLCKCGLVERAINFFVQM-VSENCSPDIITYNTLLTALCKEGMVDEAL 322
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
++ LSDS P YNT++ G
Sbjct: 323 QVFVLLSDSNCSPGLITYNTVIDG 346
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+P + N L++ L + + + M S G+ P+++TY +++ C + LR
Sbjct: 53 QIPNSTCSTN-LIRGLVRIGRIERASRVLKTMVMS-GLVPDVITYNMMVGGFCKRRQLRS 110
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A+ L+ +S SG PD YNTI++
Sbjct: 111 AIDLLEDMSLSGCPPDVITYNTIIR 135
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVCNTKNL 62
+ P+ TYN L+ LC C +++ VD++ A + P +VTY ILI+ +C +
Sbjct: 228 MEPNAITYNSLLHSLCSC----GLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLV 283
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
A+ + PD YNT++
Sbjct: 284 ERAINFFVQMVSENCSPDIITYNTLL 309
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI TYN L+ LCK + + S P L+TY +ID +
Sbjct: 293 MVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDS-NCSPGLITYNTVIDGLTRRG 351
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA++L + + + G PD + +++ G+
Sbjct: 352 YMDEALKLYNQMIEKGIAPDGITHRSLVWGF 382
Score = 40.8 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD+ TYN +V CK R L + + ++ M S G P+++TY +I ++ +
Sbjct: 83 MVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLS-GCPPDVITYNTIIRSLFDNG 141
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+A+ G P Y +++
Sbjct: 142 KFDQAVEFWRGQLRRGCLPYLIPYTILIE 170
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD+ TYN +++ L F Q+R G P L+ YTILI+ V A
Sbjct: 124 PPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRR--GCLPYLIPYTILIELVWKHCGTVRA 181
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ ++ ++ G PD YN+++
Sbjct: 182 LEVLEDMAIEGCYPDLVTYNSLV 204
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 8 PDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
PD+ TYN LV K + +YN + S G++PN +TY L+ ++C+
Sbjct: 195 PDLVTYNSLVNFASKEGKYEDAALIIYNIL-----SHGMEPNAITYNSLLHSLCSCGLWD 249
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
E +++ + + P YN ++ G
Sbjct: 250 EVDEILAIMKKTSHPPTVVTYNILING 276
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N ++ LCK SL +D M + + PN T LI + + A R++
Sbjct: 24 TNNEILHNLCKKGSLMEATKLIDIM-SRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKT 82
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ SG PD YN ++ G+
Sbjct: 83 MVMSGLVPDVITYNMMVGGF 102
>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
Length = 596
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PDI ++ +++ L KC+ + + M+A G PN+ TYTILI ++C
Sbjct: 353 MIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAK-GPSPNVRTYTILIRDLCKQM 411
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA+ + DSG +PD VY ++ G+
Sbjct: 412 KMQEAVEYFDEMVDSGCQPDAAVYTCLITGF 442
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
PNL TYT+L++ C KNL EA R + + D GFKPD ++T+++G
Sbjct: 325 PNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEG 371
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L++ LCK + + D+M S G +P+ YT LI N K + +
Sbjct: 395 PNVRTYTILIRDLCKQMKMQEAVEYFDEMVDS-GCQPDAAVYTCLITGFGNQKKMDKVYA 453
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G D YN ++K
Sbjct: 454 LLKEMKEKGCPADGRTYNALIK 475
>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Vitis vinifera]
Length = 679
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PDI ++ +++ L KC+ + + M+A G PN+ TYTILI ++C
Sbjct: 398 MIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAK-GPSPNVRTYTILIRDLCKQM 456
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA+ + DSG +PD VY ++ G+
Sbjct: 457 KMQEAVEYFDEMVDSGCQPDAAVYTCLITGF 487
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
PNL TYT+L++ C KNL EA R + + D GFKPD ++T+++G
Sbjct: 370 PNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEG 416
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L++ LCK + + D+M S G +P+ YT LI N K + +
Sbjct: 440 PNVRTYTILIRDLCKQMKMQEAVEYFDEMVDS-GCQPDAAVYTCLITGFGNQKKMDKVYA 498
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G D YN ++K
Sbjct: 499 LLKEMKEKGCPADGRTYNALIK 520
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN ++ LCK + L + + +M S +PN TY IL+D +C + EAMR
Sbjct: 8 PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGS-SCEPNSFTYCILMDGLCKEGRVEEAMR 66
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G + D VY+T++ G+
Sbjct: 67 LLGEMKRKGLEVDVVVYSTLISGF 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN L+ LCK + + + M G + +V+Y LI +CN L EAM+
Sbjct: 183 PSTVTYNVLINGLCKEGCIGDAFKIFETMLEK-GKRLEVVSYNTLIMGLCNNGKLDEAMK 241
Query: 68 LVSALSDSG--FKPDCFVYNTIMKG 90
L S+L + G +PD +NT+++G
Sbjct: 242 LFSSLLEDGNYVEPDVITFNTVIQG 266
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P +F YN L+ LCK SL +M+ S +P+ +++ I+ID ++ A
Sbjct: 358 LSPTLFDYNTLMASLCKESSLEQARRLFQEMKES-NCEPDTISFNIMIDGTLKAGDIHSA 416
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L++ + G PD + Y++ +
Sbjct: 417 KELLNDMQQMGLTPDAYTYSSFI 439
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D+ Y+ L+ C L D+M GI PN+V Y+ LI+ C R
Sbjct: 74 KGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEK-GISPNVVVYSCLINGFCKKGLWR 132
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ +++ G +PD + Y ++ G
Sbjct: 133 EATAVLHTMTERGIQPDVYTYTCMIGG 159
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TY+ ++ CK L +M+ S G+ P L Y L+ ++C +L +A
Sbjct: 323 LVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKIS-GLSPTLFDYNTLMASLCKESSLEQA 381
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + +S +PD +N ++ G
Sbjct: 382 RRLFQEMKESNCEPDTISFNIMIDG 406
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ Y+ L+ CK + L V GI+P++ TYT +I +C
Sbjct: 106 MLEKGISPNVVVYSCLINGFCK-KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDG 164
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
R+A+ L +++ G +P YN ++ G
Sbjct: 165 RARKALDLFDLMTEKGEEPSTVTYNVLING 194
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++TY ++ LCK + D M G +P+ VTY +LI+ +C +
Sbjct: 144 RGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK-GEEPSTVTYNVLINGLCKEGCIG 202
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A ++ + + G + + YNT++ G
Sbjct: 203 DAFKIFETMLEKGKRLEVVSYNTLIMG 229
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 34/115 (29%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM--RAS-------------------------- 39
PD+ T+N +++ LCK L D M R S
Sbjct: 255 PDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMEL 314
Query: 40 ------LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
LG+ P+ TY+++ID C L A L S + SG P F YNT+M
Sbjct: 315 WKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLM 369
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++N ++ K + + ++ M+ +G+ P+ TY+ I+ + + EA
Sbjct: 395 PDTISFNIMIDGTLKAGDIHSAKELLNDMQ-QMGLTPDAYTYSSFINRLSKLGQMEEAKG 453
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ SG PD VY++++KG+
Sbjct: 454 AFDSMIASGITPDNHVYDSLIKGF 477
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY L+ LCK + + +M+ G++ ++V Y+ LI C+ L
Sbjct: 43 PNSFTYCILMDGLCKEGRVEEAMRLLGEMKRK-GLEVDVVVYSTLISGFCSKGCLDRGKA 101
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ VY+ ++ G+
Sbjct: 102 LFDEMLEKGISPNVVVYSCLINGF 125
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ I P++V+Y +I+ +C K L +A+ L+ + S +P+ F Y +M G
Sbjct: 4 INILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDG 54
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY+ + L K + D M AS GI P+ Y LI + E
Sbjct: 428 LTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIAS-GITPDNHVYDSLIKGFGLNDEIEEV 486
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ L+ ++D G D + N+I+
Sbjct: 487 INLLRQMADMGVILDLEITNSIL 509
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD+ TYN L+ CK + V + M S I PN ++Y ILI+ CN
Sbjct: 629 MIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-ISRRIYPNHISYGILINGYCNMG 687
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL + + GF+ NTI+KGY
Sbjct: 688 CVSEAFRLWDEMVEKGFEATIITCNTIVKGY 718
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N ++ LCK + + +F+ M G+ P++VTY LI+ C L EA L
Sbjct: 357 NVYTLNIMINALCKNQKIENTKSFLSDMEEK-GVFPDVVTYNTLINAYCRQGLLEEAFEL 415
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ ++S G KP F YN I+ G
Sbjct: 416 MDSMSGKGLKPCVFTYNAIING 437
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K I T N +VK C+ + F+ M GI P+ +TY LI+ +
Sbjct: 699 MVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK-GIVPDGITYNTLINGFIKEE 757
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A LV+ + +SG PD YN I+ G+
Sbjct: 758 NMDRAFALVNKMENSGLLPDVITYNVILNGF 788
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P +FTYN ++ LCK +D+M +G+ P+ TY IL+ C N+
Sbjct: 422 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM-LKIGMSPDTATYNILLVECCRNDNMM 480
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A R+ + G PD ++ ++
Sbjct: 481 DAERIFDEMPSQGVVPDLVSFSALI 505
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TYN L+ K ++ + V++M S G+ P+++TY ++++
Sbjct: 734 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQG 792
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + + G PD Y +++ G+
Sbjct: 793 RMQEAELIMLKMIERGVNPDRSTYTSLINGH 823
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN L+ C+ L + +D M G+KP + TY +I+ +C T
Sbjct: 387 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK-GLKPCVFTYNAIINGLCKTGKYL 445
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A ++ + G PD YN ++
Sbjct: 446 RAKGVLDEMLKIGMSPDTATYNILL 470
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN ++ LCK + L+ +M G+ P+ T+T LI+ N+ +A+ L
Sbjct: 567 DVVTYNTILNGLCKEKMLSEADELFTEM-TERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ KPD YNT++ G+
Sbjct: 626 FEMMIQRNLKPDVVTYNTLIDGF 648
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF ++P PD+ +++ L+ L K L + M+ + G+ P+ V YTILI
Sbjct: 485 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDNVIYTILIGGF 543
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + EA+++ + + G D YNTI+ G
Sbjct: 544 CRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNG 577
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ C+ ++ D+M G ++VTY +++ +C K L EA
Sbjct: 529 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-GCXLDVVTYNTILNGLCKEKMLSEA 587
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +++ G PD + + T++ GY
Sbjct: 588 DELFTEMTERGVFPDFYTFTTLINGY 613
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ C+ ++ D+M S G+ P+LV+++ LI + L +A
Sbjct: 459 MSPDTATYNILLVECCRNDNMMDAERIFDEM-PSQGVVPDLVSFSALIGLLSKNGCLDQA 517
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G PD +Y ++ G+
Sbjct: 518 LKYFRDMKNAGLAPDNVIYTILIGGF 543
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN ++ + + + +M G+ P+ TYT LI+ NL+EA
Sbjct: 774 LLPDVITYNVILNGFSRQGRMQEAELIMLKM-IERGVNPDRSTYTSLINGHVTQNNLKEA 832
Query: 66 MRLVSALSDSGFKPD 80
R+ + GF PD
Sbjct: 833 FRVHDEMLQRGFVPD 847
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+ L+ K ++ + M +KP++VTY LID C + +
Sbjct: 601 PDFYTFTTLINGYXKDGNMNKAVTLFEMM-IQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 659
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + P+ Y ++ GY
Sbjct: 660 LWNDMISRRIYPNHISYGILINGY 683
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L K + + ++ S G++ N+ T I+I+ +C + + +S +
Sbjct: 327 NSLLGGLVKVGWVDLAWEIYQEVVRS-GVQVNVYTLNIMINALCKNQKIENTKSFLSDME 385
Query: 74 DSGFKPDCFVYNTIMKGY 91
+ G PD YNT++ Y
Sbjct: 386 EKGVFPDVVTYNTLINAY 403
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ LCK R L V M S G P +VTY L++ C +K + A R
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRS-GCYPTVVTYNSLMELFCRSKQVDRAFR 262
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +S+ G PD YNT++ G
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAG 285
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q P++ TY ++ LCK L +D M + G PN++TY++L++ +C +
Sbjct: 131 QCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNET-GCCPNVITYSVLVEGLCKAGRTDK 189
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ GF+PD +YNT++ G
Sbjct: 190 GFTLLQEMTRRGFQPDVIMYNTLLNG 215
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N LV L K + + + M S PN+VTYT +I+ +C L A+
Sbjct: 98 PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIE 157
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++++G P+ Y+ +++G
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEG 180
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ LV+ LCK + + +M G +P+++ Y L++ +C ++ L EA+
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEM-TRRGFQPDVIMYNTLLNGLCKSRRLDEALE 227
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
LV + SG P YN++M+
Sbjct: 228 LVQLMIRSGCYPTVVTYNSLME 249
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ PD+ +++ ++ LCK L Y M + KPN V Y LID +
Sbjct: 378 MIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM-SERECKPNPVAYAALIDGLSKGG 436
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+R+ + +S F+P YN+++ G
Sbjct: 437 EVDKAVRVFELMVES-FRPGVATYNSVLDG 465
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L++ C+ + + + + Q+ + G P+++ Y +I +C L +A
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLI-QVMSERGCPPDVINYNTVIAGLCRDARLDDAQA 297
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + PD Y+TI+ G
Sbjct: 298 LLKQMVAARCVPDVITYSTIIDG 320
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY L+ LCK L Y +D+MR GI P + + +I +C +A+
Sbjct: 28 PNEFTYGSLIHGLCKAGKLDQAYELLDEMR-DRGIPPGVAVHNGVIKGLCKAGRFGDALG 86
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + PD +N ++
Sbjct: 87 YFKTVAGTKCTPDIITFNILV 107
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN------TK 60
PPD+ YN ++ LC+ L + QM A+ + P+++TY+ +ID +C
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV-PDVITYSTIIDGLCKDWRVDADW 331
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A ++ + +G P+ Y +++G
Sbjct: 332 KLEAACEILEMMKQTGCPPNAGTYAVVIEG 361
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNF-----VDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
PD+ TY+ ++ LCK + + + +M G PN TY ++I+ +C +
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
++A+ L+ + DS PD ++ ++
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVI 394
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ TY +++ LC+ R + +M S + P+L +++++I ++C + +L A
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDS-EVVPDLSSFSMVIGSLCKSHDLDAAY 407
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
++ +S+ KP+ Y ++ G
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDG 431
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP + +N ++K LCK + + A P+++T+ IL+D + + +
Sbjct: 59 RGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTV-AGTKCTPDIITFNILVDALVKSGRVE 117
Query: 64 EAMRLVSAL-SDSGFKPDCFVYNTIMKG 90
EA ++ ++ + S P+ Y T++ G
Sbjct: 118 EAFQIFESMHTSSQCLPNVVTYTTVING 145
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
PN TY LI +C L +A L+ + D G P V+N ++KG
Sbjct: 28 PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKG 74
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + P + TYN ++ LC + V+ M P+ +Y LI +C
Sbjct: 447 LMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECF-PDGASYGALIRGLCRVS 505
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA L A+ GF + VYN ++
Sbjct: 506 CVEEAYELFQAVEAKGFAMEVGVYNVLV 533
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ P+ Y L+ L K + + M S +P + TY ++D +C +
Sbjct: 416 RECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESF--RPGVATYNSVLDGLCGVGRIE 473
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R+V + PD Y +++G
Sbjct: 474 EAVRMVEGMIHKECFPDGASYGALIRG 500
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PD+ TY+ L+ LCK L + +M S PN VTY LI C
Sbjct: 176 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EAM L+ ++++G PD Y T+M G+
Sbjct: 236 KMDEAMNLLERMAETGSSPDVVTYTTLMNGF 266
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ CK L Y+ ++QM G+ P++VT+T L+D +C L +A+
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQM-TRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + P + YNTI+ GY
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGY 336
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ P TYN L+ LCK + Y+ +++M S G P++ TYT LI C +K
Sbjct: 109 KKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSD 167
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ L GF+PD Y+ ++ G
Sbjct: 168 DALRVFEQLVARGFRPDVVTYSCLIDG 194
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+++ PDIFTY L+ CK + +Q+ A G +P++VTY+ LID +C
Sbjct: 141 MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEG 199
Query: 61 NLREAMRLVSALSDSGF-KPDCFVYNTIMKGY 91
L+EA+ L + SG P+ YN+++ G+
Sbjct: 200 RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 231
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD++TY ++ LC L F+++M A+ + PN+VTYT+LID +C
Sbjct: 37 MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM-ANRNLTPNVVTYTVLIDGLCKGG 95
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ L+S + P YN+++ G
Sbjct: 96 RVDEAVALLSKMRKKCV-PTAVTYNSLISG 124
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ C+ + N +++M A G P++VTYT L++ C L +A
Sbjct: 219 PNTVTYNSLISGFCRMGKMDEAMNLLERM-AETGSSPDVVTYTTLMNGFCKLARLDDAYD 277
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ ++ G PD + ++M G
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDG 300
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ TY L+ LCK + + +MR P VTY LI +C +
Sbjct: 75 RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCKAERAS 132
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ + SG PD F Y T++ G+
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGF 160
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P ++TYN ++ C+ L F M + PN+V++ I+I +C
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKF---MLEEMDCPPNVVSFNIMIRGLCKVNRSS 376
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM LV PD +Y T++ G
Sbjct: 377 EAMELVEEARRRRCNPDVVMYTTVIDG 403
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L++ LCK + L F+ +M S G P++ TYT +I +C L EA +
Sbjct: 10 DFVTYTSLIQGLCKVKRLEQALIFLGKM-VSKGFHPDVYTYTAVIHALCVENRLHEARKF 68
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ +++ P+ Y ++ G
Sbjct: 69 LEEMANRNLTPNVVTYTVLIDG 90
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ T+ L+ LC+ L+ + + +MR P + TY ++D C L
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK-SCSPTVYTYNTILDGYCRANQLE 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + L + P+ +N +++G
Sbjct: 344 EARKFM--LEEMDCPPNVVSFNIMIRG 368
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 36 MRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
M A+ + VTYT LI +C K L +A+ + + GF PD + Y ++
Sbjct: 1 MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHA 55
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LC+ + + +M G PN +TY+ L+ +CN L A
Sbjct: 392 PDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARG 451
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ YN ++ +
Sbjct: 452 YI----EKGCVPNIGTYNLLIDAF 471
>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 613
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K DIFTYN + LCK ++ M G+ PN V++TI+ID C NL
Sbjct: 419 KGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTM-VEKGVDPNAVSFTIMIDIHCKEGNLV 477
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA R+ + G KP+ YNT++ GY
Sbjct: 478 EAERVFQDMKKKGEKPNVVTYNTLIDGY 505
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TY L+ C L V++M+ S G+ NLV + LI+ C +
Sbjct: 349 RGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQ-SQGLDMNLVIFNTLINGYCKKGMID 407
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R+ + GF+ D F YNTI G
Sbjct: 408 EALRMQDVMEKKGFENDIFTYNTIAGG 434
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ ++ ++ CK +L M+ G KPN+VTY LID
Sbjct: 451 MVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKK-GEKPNVVTYNTLIDGYSKKG 509
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L+EA RL + G D + Y T++ G
Sbjct: 510 KLKEAYRLKDEMESIGMTSDIYTYTTLVHG 539
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + DI + ++ CK ++ + D++ G+ N TY LI CN+
Sbjct: 311 MLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNER-GLVANAHTYGALIHGTCNSG 369
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L A LV+ + G + ++NT++ GY
Sbjct: 370 QLDAAEMLVNEMQSQGLDMNLVIFNTLINGY 400
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TYN L+ K L Y D+M S+G+ ++ TYT L+ C +
Sbjct: 489 KGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEME-SIGMTSDIYTYTTLVHGECVFGKVE 547
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L++ + G Y I+ G
Sbjct: 548 EALTLLNEVCRKGLAISIVTYTAIISG 574
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ DI+TY LV C + ++++ R L I ++VTYT +I + E
Sbjct: 526 MTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAI--SIVTYTAIISGLSKEGRSEE 583
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A RL + +G PD VY +++
Sbjct: 584 AFRLYDEMMAAGLTPDDRVYTSLV 607
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 34 DQMRASLGIKPNLVTY---------TILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVY 84
DQM SLG +V + TI+ID +C + A L+ ++ G KP+ Y
Sbjct: 194 DQMVMSLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTY 253
Query: 85 NTIMKGY 91
NT++ Y
Sbjct: 254 NTLVNAY 260
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN LV K V + M + N TYT+LI+ ++ +
Sbjct: 244 KGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMD-KVVYNAATYTLLIEWYGSSGKIA 302
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA ++ + + G + D V+ +I+
Sbjct: 303 EAEKVFEKMLERGVEADIHVFTSII 327
>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
Length = 455
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L++K L P+ FTY+FL++ K R + +D++ A G +PNLV+Y +L+ +C
Sbjct: 81 LMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAK-GWQPNLVSYNVLLTGLCKEG 139
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+R L GF P+ YN I++
Sbjct: 140 RTEEAIRFFRDLPSKGFNPNVVSYNIILR 168
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TYN LV+ LC +L +D++ G+ PN TY+ L++ + + EAM
Sbjct: 52 PTNTVTYNSLVRGLCMHGNLNQSLQLLDKLMWK-GLVPNEFTYSFLLEAAYKERGVNEAM 110
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + G++P+ YN ++ G
Sbjct: 111 KLLDEIIAKGWQPNLVSYNVLLTG 134
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y FLV LCK ++ V++M + G N VTY L+ +C NL ++++
Sbjct: 18 PDAASYTFLVNNLCKRGNIGHAMQLVEKMEEN-GYPTNTVTYNSLVRGLCMHGNLNQSLQ 76
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ L G P+ F Y+ +++
Sbjct: 77 LLDKLMWKGLVPNEFTYSFLLEA 99
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 33 VDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
V +M GI P+ +YT L++N+C N+ AM+LV + ++G+ + YN++++G
Sbjct: 7 VMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRG 64
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ +YN L+ LCK F + S G PN+V+Y I++ ++C+
Sbjct: 116 IIAKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDL-PSKGFNPNVVSYNIILRSLCHEG 174
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
EA +L++ + P YN ++
Sbjct: 175 RWEEANQLLAEMDSEERSPSLVTYNILI 202
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 3 FKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
F+ LP P++ +YN +++ LC + +M S P+LVTY ILI ++
Sbjct: 148 FRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMD-SEERSPSLVTYNILIGSLA 206
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A ++ + + FKP YN I+
Sbjct: 207 FHGRIEHAFEVLDEMVRASFKPSATTYNPII 237
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P++ TY+ L+ LCK + VD+M G PN+VTY+ ++D +C ++
Sbjct: 370 RKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDR-GQPPNIVTYSSILDALCKNHHVD 428
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ L D G +PD + Y ++KG
Sbjct: 429 KAIALLTNLKDQGIRPDMYTYTILIKG 455
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD+FTYN L+ L + ++M+ I PN+ T+ IL+D C
Sbjct: 227 MVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKE-NINPNVYTFNILVDGFCKEG 285
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A +++ + KPD YN++M GY
Sbjct: 286 KVNDAKVVLAIMMKDDIKPDVVTYNSLMDGY 316
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 7 PPDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
PP+I TY+ ++ LCK +++ + N DQ GI+P++ TYTILI +C + L
Sbjct: 408 PPNIVTYSSILDALCKNHHVDKAIALLTNLKDQ-----GIRPDMYTYTILIKGLCQSGRL 462
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + L G+ D + Y +++G+
Sbjct: 463 EDAQNVFEDLLVKGYNLDVYAYTVMIQGF 491
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK +T + ++ L ++PN V Y ++IDN+C K + +A L
Sbjct: 165 DQVSYGTLINGLCKVGRITAALQLLKRVDGKL-VQPNAVMYNMIIDNMCKAKLVNDAFDL 223
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + PD F YN ++ G+
Sbjct: 224 YSQMVAKRICPDVFTYNALISGF 246
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++TY L+K LC+ L N + + G ++ YT++I C+
Sbjct: 440 QGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVK-GYNLDVYAYTVMIQGFCDKGFFD 498
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L+S + D+G P+ Y ++
Sbjct: 499 KALALLSKMEDNGCIPNAKTYELVI 523
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+++T+N LV CK + + M IKP++VTY L+D C+ +
Sbjct: 265 ENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKD-DIKPDVVTYNSLMDGYCSINKVN 323
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + +++ G + +Y T++ G+
Sbjct: 324 KAKDIFDSMASGGVIANVQIYTTMVNGF 351
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P T+N L+K LC + +F D++ A G + V+Y LI+ +C +
Sbjct: 125 KGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQ-GFHLDQVSYGTLINGLCKVGRIT 183
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A++L+ + +P+ +YN I+
Sbjct: 184 AALQLLKRVDGKLVQPNAVMYNMII 208
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D FT+N L+ C + + ++ ++ G P +T+ LI +C ++ +A
Sbjct: 92 IESDFFTFNILINCFSQLGLNSLSFSIFAKILKK-GYHPTAITFNTLIKGLCLKGHIHQA 150
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + GF D Y T++ G
Sbjct: 151 LHFHDKVVAQGFHLDQVSYGTLING 175
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC+ Y +M G+ PN TYT+LID C N EA+R
Sbjct: 615 PNEVTYNVLIHALCRMGRTNLAYQHFHEM-LERGLSPNKYTYTLLIDGNCKEGNWEEAIR 673
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S + G PD +N + KG+
Sbjct: 674 LYSEMHQHGIHPDHCTHNALFKGF 697
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLT-TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD+ TYN L+ CK +L ++ F D RA G+ P+++TY IL+D C +L E
Sbjct: 368 LLPDLITYNSLINGYCKAGNLKEALWLFGDLKRA--GLAPSVLTYNILLDGYCRLGDLEE 425
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A R + + G +PD Y +M G
Sbjct: 426 ARRFKQEMVEQGCQPDVSTYTILMNG 451
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ + + ++ +MRA +G+ P+L+TY LI+ C NL+EA+
Sbjct: 335 PTVVTYNTIIHGMFRSGNVEAARMKFVEMRA-MGLLPDLITYNSLINGYCKAGNLKEALW 393
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L +G P YN ++ GY
Sbjct: 394 LFGDLKRAGLAPSVLTYNILLDGY 417
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TYN L+ C+ L F +M G +P++ TYTIL++ +NL
Sbjct: 403 LAPSVLTYNILLDGYCRLGDLEEARRFKQEM-VEQGCQPDVSTYTILMNGSRKVRNLAMV 461
Query: 66 MRLVSALSDSGFKPDCFVYNT 86
+ G +PDCF YNT
Sbjct: 462 REFFDEMLSKGLQPDCFAYNT 482
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD F YN + S + + + M S GI + VTY I +D +C +
Sbjct: 468 MLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVM-ISRGISSDTVTYNIFLDGLCKSG 526
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL++A L + G +PDC Y ++ +
Sbjct: 527 NLKDAYVLWMKMVSDGLQPDCITYTCLIHAH 557
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D TYN + LCK +L Y +M S G++P+ +TYT LI C
Sbjct: 503 MISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKM-VSDGLQPDCITYTCLIHAHCERG 561
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA + + SG P Y + Y
Sbjct: 562 RLREARDIFDGMLVSGLPPSAVTYTVFIHAY 592
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ C+ L + D M S G+ P+ VTYT+ I C NL A
Sbjct: 543 LQPDCITYTCLIHAHCERGRLREARDIFDGMLVS-GLPPSAVTYTVFIHAYCRRGNLYSA 601
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + G +P+ YN ++
Sbjct: 602 YGWFQKMLEEGVRPNEVTYNVLI 624
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 34/119 (28%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL------------------------- 40
LP D+ TYN ++ L + L VD+MR S
Sbjct: 265 LPSDV-TYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGA 323
Query: 41 --------GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
GI P +VTY +I + + N+ A + G PD YN+++ GY
Sbjct: 324 LQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGY 382
>gi|341606827|gb|AEK83516.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 207
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 11 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTYSVVVNG 93
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 40 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 98
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 99 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 128
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ LCK R L V M S G P +VTY L++ C +K + A R
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRS-GCYPTVVTYNSLMELFCRSKQVDRAFR 262
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +S+ G PD YNT++ G
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAG 285
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q P++ TY ++ LCK L +D M + G PN++TY++L++ +C +
Sbjct: 131 QCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNET-GCCPNVITYSVLVEGLCKAGRTDK 189
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ GF+PD +YNT++ G
Sbjct: 190 GFTLLQEMTRRGFQPDVIMYNTLLNG 215
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N LV L K + + + M S PN+VTYT +I+ +C L A+
Sbjct: 98 PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIE 157
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++++G P+ Y+ +++G
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEG 180
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ LV+ LCK + + +M G +P+++ Y L++ +C ++ L EA+
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEM-TRRGFQPDVIMYNTLLNGLCKSRRLDEALE 227
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
LV + SG P YN++M+
Sbjct: 228 LVQLMIRSGCYPTVVTYNSLME 249
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ PD+ +++ ++ LCK L Y M + KPN V Y LID +
Sbjct: 378 MIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM-SERECKPNPVAYAALIDGLSKGG 436
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+R+ + +S F+P YN+++ G
Sbjct: 437 EVDKAVRVFELMVES-FRPGVATYNSVLDG 465
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L++ C+ + + + + Q+ + G P+++ Y +I +C L +A
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLI-QVMSERGCPPDVINYNTVIAGLCRDARLDDAQA 297
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + PD Y+TI+ G
Sbjct: 298 LLKQMVAARCVPDVITYSTIIDG 320
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN------TK 60
PPD+ YN ++ LC+ L + QM A+ + P+++TY+ +ID +C
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV-PDVITYSTIIDGLCKDWRVDADW 331
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A ++ + +G P+ Y +++G
Sbjct: 332 KLEAACEILEMMKQTGCPPNAGTYAVVIEG 361
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY L+ LCK L Y +D+MR GI P + + +I +C +A+
Sbjct: 28 PNEFTYGSLIHGLCKAGKLDQAYELLDEMR-DRGIPPGVAVHNGVIRGLCKAGRFGDALG 86
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + PD +N ++
Sbjct: 87 YFKTVAGTKCTPDIITFNILV 107
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNF-----VDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
PD+ TY+ ++ LCK + + + +M G PN TY ++I+ +C +
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
++A+ L+ + DS PD ++ ++
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVI 394
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ TY +++ LC+ R + +M S + P+L +++++I ++C + +L A
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDS-EVVPDLSSFSMVIGSLCKSHDLDAAY 407
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
++ +S+ KP+ Y ++ G
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDG 431
Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP + +N +++ LCK + + A P+++T+ IL+D + + +
Sbjct: 59 RGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTV-AGTKCTPDIITFNILVDALVKSGRVE 117
Query: 64 EAMRLVSAL-SDSGFKPDCFVYNTIMKG 90
EA ++ ++ + S P+ Y T++ G
Sbjct: 118 EAFQIFESMHTSSQCLPNVVTYTTVING 145
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
PN TY LI +C L +A L+ + D G P V+N +++G
Sbjct: 28 PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRG 74
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + P + TYN ++ LC + V+ M P+ +Y LI +C
Sbjct: 447 LMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECF-PDGASYGALIRGLCRVS 505
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA L A+ GF + VYN ++
Sbjct: 506 CVEEAYELFQAVEAKGFAMEVGVYNVLV 533
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ P+ Y L+ L K + + M S +P + TY ++D +C +
Sbjct: 416 RECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESF--RPGVATYNSVLDGLCGVGRIE 473
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R+V + PD Y +++G
Sbjct: 474 EAVRMVEGMIHKECFPDGASYGALIRG 500
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+P PD FTYN LV +C+ + V QM + GI+PN+VTYT+L+D
Sbjct: 201 LRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERA-GIRPNVVTYTMLVDG 259
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
CN + EA+ ++ + + G Y +++ G
Sbjct: 260 FCNASRVEEAVCVLERMKEKGVSATEATYRSLVHG 294
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ T+ L+ LC L +N +M + G++PN+ TY +LI +C+ ++ +A
Sbjct: 491 LMPDVITFTSLIDGLCHTHQLDDAFNCFSEM-SEWGVRPNVQTYNVLIHGLCSAGHVSKA 549
Query: 66 MRLVSALSDSGFKPDCFVYN 85
+ L++ + G PD + +N
Sbjct: 550 IELLNKMKMDGITPDAYSFN 569
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L+ K ++ F+ +M G+ P+++T+T LID +C+T L +A
Sbjct: 458 PNLVTFNTLINGYLKLGNVHDAKAFL-KMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFN 516
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
S +S+ G +P+ YN ++ G
Sbjct: 517 CFSEMSEWGVRPNVQTYNVLIHG 539
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC ++ +++M+ GI P+ ++ I + C + + +A +
Sbjct: 528 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMD-GITPDAYSFNAPILSFCRMRKIEKAQK 586
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +S G PD + YN ++K
Sbjct: 587 LFNDMSRYGVSPDSYTYNALIKA 609
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+P P YN ++ + ++ Y QM A G +P+ TY L+ V
Sbjct: 167 VFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPAD-GCRPDCFTYNTLVHGV 225
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + EA+RLV + +G +P+ Y ++ G+
Sbjct: 226 CRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGF 260
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++K +C+ ++ + QM S G+ ++ +Y I+ID + A+ + +
Sbjct: 393 YIMIIKSFLRCKDISKANKYFSQM-VSDGLLSSVESYNIVIDCFAKAGEVERALETIKVM 451
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+SGF P+ +NT++ GY
Sbjct: 452 QESGFSPNLVTFNTLINGY 470
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 3 FKQLPPD-----IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
F Q+ D + +YN ++ C K + + M+ S G PNLVT+ LI+
Sbjct: 413 FSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQES-GFSPNLVTFNTLINGYL 471
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +A + + + G PD + +++ G
Sbjct: 472 KLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDG 504
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +++N + C+ R + + M + G+ P+ TY LI +C+ + + EA
Sbjct: 561 ITPDAYSFNAPILSFCRMRKIEKAQKLFNDM-SRYGVSPDSYTYNALIKALCDERRVDEA 619
Query: 66 MRLVSAL 72
++ A+
Sbjct: 620 KEIILAM 626
>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Glycine max]
Length = 545
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN L+ LCK ++ ++ +D+M G N++TY LI+ +C L
Sbjct: 364 KNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDR-GHHANVITYNSLINGLCKNGQLD 422
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ + D G +PD + N ++ G
Sbjct: 423 KAIALINKMKDQGIQPDMYTLNILLHG 449
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV-CNTKNLREAMR 67
++ TYN L+ LCK L +++M+ GI+P++ T IL+ + C K L+ A
Sbjct: 404 NVITYNSLINGLCKNGQLDKAIALINKMKDQ-GIQPDMYTLNILLHGLLCKGKRLKNAQG 462
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L D G+ P+ + YN I+ G+
Sbjct: 463 LFQDLLDKGYHPNVYTYNIIIYGH 486
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ CLCK + ++ N +M GI N+VTY+ +I C L EA+
Sbjct: 201 PNVVMYNTIIDCLCKRKLVSEACNLFSEMSVK-GISANVVTYSAIIHGFCIVGKLTEALG 259
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + PD ++YNT++
Sbjct: 260 FLNEMVLKAINPDVYIYNTLV 280
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD FT N L+ C C + ++ + ++ G +P+ VT T LI +C
Sbjct: 89 LELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKI-LKWGYQPDTVTLTTLIKGLCLKG 147
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ L GF+ D Y T++ G
Sbjct: 148 QVKKALHFHDKLLAQGFRLDQVSYGTLING 177
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TYN L+ K V+N V M G+ P++ +Y I+I+ +C K + EA
Sbjct: 304 LKPNVITYNTLIDGYAK-----HVFNAVGLM----GVTPDVWSYNIMINRLCKIKRVEEA 354
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + P+ YN+++ G
Sbjct: 355 LNLYKEMHQKNMVPNTVTYNSLIDG 379
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ TY+ ++ C LT F+++M I P++ Y L+D + ++
Sbjct: 232 KGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLK-AINPDVYIYNTLVDALHKEGKVK 290
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +++ + + KP+ YNT++ GY
Sbjct: 291 EAKNVLAVIVKTCLKPNVITYNTLIDGY 318
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 4 KQLPPDIFTYNFLVK-CLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + PD++T N L+ LCK + L + G PN+ TY I+I C L
Sbjct: 434 QGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDK-GYHPNVYTYNIIIYGHCKEGLL 492
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
EA L S + DSG P+ + I+
Sbjct: 493 DEAYALQSKMEDSGCSPNAITFKIII 518
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T L+K LC + +F D++ A G + + V+Y LI+ VC R A++
Sbjct: 131 PDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQ-GFRLDQVSYGTLINGVCKIGETRAAIQ 189
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +P+ +YNTI+
Sbjct: 190 LLRRIDGRLTEPNVVMYNTII 210
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ +CK + ++ L +PN+V Y +ID +C K + EA L
Sbjct: 167 DQVSYGTLINGVCKIGETRAAIQLLRRIDGRL-TEPNVVMYNTIIDCLCKRKLVSEACNL 225
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S +S G + Y+ I+ G+
Sbjct: 226 FSEMSVKGISANVVTYSAIIHGF 248
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + PP I +N ++ K + TV + ++ I+P+ T ILI+ C+
Sbjct: 55 LCMRHTPP-IIQFNKILDSFAKMKHYPTVVSLSRRLELK-AIQPDFFTLNILINCFCHLG 112
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++S + G++PD T++KG
Sbjct: 113 QINLAFSVLSKILKWGYQPDTVTLTTLIKG 142
>gi|341606823|gb|AEK83514.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 11 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTYSVVVNG 93
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 40 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 98
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 99 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 128
>gi|341606825|gb|AEK83515.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 206
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 10 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 66
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 67 AIRLLHRMIDEGFKPDVVTYSVVVNG 92
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 74 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 132
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 133 RIDEAERLFEEMSEKGCTRDSYCYNALI 160
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 39 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 97
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 98 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 127
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +N ++ CK + D M +G+KP+++TY+ LID C + EA +L
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++++ G KPDC YNT++ GY
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGY 559
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ L+ C + + M S+G+KP+ VTY LI+ C + +A+
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASM-VSVGMKPDCVTYNTLINGYCKISRMEDALV 570
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD YN I++G
Sbjct: 571 LFREMESSGVSPDIITYNIILQG 593
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K L Y +M GI PN+VTY+ +I +C + + +AM
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILPNVVTYSSIIAALCKAQAMDKAM 254
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++++ +G P+C YN+I+ GY
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN +V C F+ +M + G++P++VTY L+D +C EA +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGY 349
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ ++ LCK +++ + M + G+ PN TY ++ C++ +EA+
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSGQPKEAIG 290
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +PD YN++M
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLM 311
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAA 603
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 604 KELYVGITESGTQLELSTYNIILHG 628
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + L+K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 117 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDEN 176
Query: 61 NLREAMRLVSALSDSG--FKPDCFVYNTIMKGY 91
+EA+ L+ + D G PD Y T++ G+
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK T D M G+KP + TY L+ L E
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHG 360
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 361 LLDLMVRNGIHPNHYVFSILICAY 384
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI PN ++ILI +
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVD 391
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G PD Y T++
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L P YN L+ LC + +M GI + + + +ID+ C
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM-LDRGICLDTIFFNSIIDSHCKEG 493
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KPD Y+T++ GY
Sbjct: 494 RVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ + ++ L+ K + +MR G+ P+ VTY +I +C + + +AMR
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMR 430
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ D P VYN+++
Sbjct: 431 YFEQMIDERLSPGNIVYNSLI 451
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ LCK + + +QM + P + Y LI ++C +A
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVYNSLIHSLCIFDKWDKA 463
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G D +N+I+ +
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSH 489
>gi|341606829|gb|AEK83517.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 11 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTYSVVVNG 93
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GXAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 40 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 98
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 99 RVEEALDYFQTCRFNGXAINSMFYSSLIDG 128
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD+ TYN L+ CK + V + M S I PN ++Y ILI+ CN
Sbjct: 525 MIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-ISRRIYPNHISYGILINGYCNMG 583
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL + + GF+ NTI+KGY
Sbjct: 584 CVSEAFRLWDEMVEKGFEATIITCNTIVKGY 614
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N ++ LCK + + +F+ M G+ P++VTY LI+ C L EA L
Sbjct: 253 NVYTLNIMINALCKNQKIENTKSFLSDMEEK-GVFPDVVTYNTLINAYCRQGLLEEAFEL 311
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ ++S G KP F YN I+ G
Sbjct: 312 MDSMSGKGLKPCVFTYNAIING 333
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K I T N +VK C+ + F+ M GI P+ +TY LI+ +
Sbjct: 595 MVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK-GIVPDGITYNTLINGFIKEE 653
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A LV+ + +SG PD YN I+ G+
Sbjct: 654 NMDRAFALVNKMENSGLLPDVITYNVILNGF 684
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P +FTYN ++ LCK +D+M +G+ P+ TY IL+ C N+
Sbjct: 318 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM-LKIGMSPDTATYNILLVECCRNDNMM 376
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A R+ + G PD ++ ++
Sbjct: 377 DAERIFDEMPSQGVVPDLVSFSALI 401
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TYN L+ K ++ + V++M S G+ P+++TY ++++
Sbjct: 630 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQG 688
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + + G PD Y +++ G+
Sbjct: 689 RMQEAELIMLKMIERGVNPDRSTYTSLINGH 719
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN L+ C+ L + +D M G+KP + TY +I+ +C T
Sbjct: 283 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK-GLKPCVFTYNAIINGLCKTGKYL 341
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A ++ + G PD YN ++
Sbjct: 342 RAKGVLDEMLKIGMSPDTATYNILL 366
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN ++ LCK + L+ +M G+ P+ T+T LI+ N+ +A+ L
Sbjct: 463 DVVTYNTILNGLCKEKMLSEADELFTEM-TERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ KPD YNT++ G+
Sbjct: 522 FEMMIQRNLKPDVVTYNTLIDGF 544
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF ++P PD+ +++ L+ L K L + M+ + G+ P+ V YTILI
Sbjct: 381 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDNVIYTILIGGF 439
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + EA+++ + + G D YNTI+ G
Sbjct: 440 CRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNG 473
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ C+ ++ D+M G ++VTY +++ +C K L EA
Sbjct: 425 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-GCVLDVVTYNTILNGLCKEKMLSEA 483
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +++ G PD + + T++ GY
Sbjct: 484 DELFTEMTERGVFPDFYTFTTLINGY 509
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ C+ ++ D+M S G+ P+LV+++ LI + L +A
Sbjct: 355 MSPDTATYNILLVECCRNDNMMDAERIFDEM-PSQGVVPDLVSFSALIGLLSKNGCLDQA 413
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + ++G PD +Y ++ G+
Sbjct: 414 LKYFRDMKNAGLAPDNVIYTILIGGF 439
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN ++ + + + +M G+ P+ TYT LI+ NL+EA
Sbjct: 670 LLPDVITYNVILNGFSRQGRMQEAELIMLKM-IERGVNPDRSTYTSLINGHVTQNNLKEA 728
Query: 66 MRLVSALSDSGFKPD 80
R+ + GF PD
Sbjct: 729 FRVHDEMLQRGFVPD 743
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+ L+ K ++ + M +KP++VTY LID C + +
Sbjct: 497 PDFYTFTTLINGYSKDGNMNKAVTLFEMM-IQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 555
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + P+ Y ++ GY
Sbjct: 556 LWNDMISRRIYPNHISYGILINGY 579
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L K + + ++ S G++ N+ T I+I+ +C + + +S +
Sbjct: 223 NSLLGGLVKVGWVDLAWEIYQEVVRS-GVQVNVYTLNIMINALCKNQKIENTKSFLSDME 281
Query: 74 DSGFKPDCFVYNTIMKGY 91
+ G PD YNT++ Y
Sbjct: 282 EKGVFPDVVTYNTLINAY 299
>gi|341606837|gb|AEK83521.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606869|gb|AEK83537.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606977|gb|AEK83591.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606979|gb|AEK83592.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606981|gb|AEK83593.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606983|gb|AEK83594.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606985|gb|AEK83595.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606987|gb|AEK83596.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606989|gb|AEK83597.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606991|gb|AEK83598.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606993|gb|AEK83599.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606995|gb|AEK83600.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606997|gb|AEK83601.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606999|gb|AEK83602.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607001|gb|AEK83603.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607003|gb|AEK83604.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607005|gb|AEK83605.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607007|gb|AEK83606.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607009|gb|AEK83607.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607011|gb|AEK83608.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607013|gb|AEK83609.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607015|gb|AEK83610.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 207
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 11 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTYSVVVNG 93
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GFAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 40 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 98
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +GF + Y++++ G
Sbjct: 99 RVEEALDYFQTCRFNGFAINSMFYSSLIDG 128
>gi|341606831|gb|AEK83518.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606833|gb|AEK83519.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606835|gb|AEK83520.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606839|gb|AEK83522.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606841|gb|AEK83523.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606843|gb|AEK83524.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606845|gb|AEK83525.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606847|gb|AEK83526.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606849|gb|AEK83527.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606851|gb|AEK83528.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606853|gb|AEK83529.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606855|gb|AEK83530.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606857|gb|AEK83531.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606859|gb|AEK83532.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606861|gb|AEK83533.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606863|gb|AEK83534.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606865|gb|AEK83535.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606867|gb|AEK83536.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606871|gb|AEK83538.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606873|gb|AEK83539.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606875|gb|AEK83540.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606877|gb|AEK83541.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606879|gb|AEK83542.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606881|gb|AEK83543.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606883|gb|AEK83544.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606885|gb|AEK83545.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606887|gb|AEK83546.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606889|gb|AEK83547.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606891|gb|AEK83548.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606893|gb|AEK83549.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606895|gb|AEK83550.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606897|gb|AEK83551.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606899|gb|AEK83552.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606901|gb|AEK83553.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606903|gb|AEK83554.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606905|gb|AEK83555.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606907|gb|AEK83556.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606909|gb|AEK83557.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606911|gb|AEK83558.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606913|gb|AEK83559.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606915|gb|AEK83560.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606917|gb|AEK83561.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606919|gb|AEK83562.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606921|gb|AEK83563.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606923|gb|AEK83564.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606925|gb|AEK83565.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606927|gb|AEK83566.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606929|gb|AEK83567.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606931|gb|AEK83568.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606933|gb|AEK83569.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606935|gb|AEK83570.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606937|gb|AEK83571.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606939|gb|AEK83572.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606941|gb|AEK83573.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606943|gb|AEK83574.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606945|gb|AEK83575.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606947|gb|AEK83576.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606949|gb|AEK83577.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606951|gb|AEK83578.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606953|gb|AEK83579.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606957|gb|AEK83581.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606959|gb|AEK83582.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606961|gb|AEK83583.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606963|gb|AEK83584.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606965|gb|AEK83585.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606967|gb|AEK83586.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606969|gb|AEK83587.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606971|gb|AEK83588.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606973|gb|AEK83589.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606975|gb|AEK83590.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 11 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTYSVVVNG 93
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GFAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 40 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 98
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +GF + Y++++ G
Sbjct: 99 RVEEALDYFQTCRFNGFAINSMFYSSLIDG 128
>gi|341605725|gb|AEK82965.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHXMIDEGFKPDVVTYSVVVNG 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHXM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 131
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ C CK + + + +M+ + G+KPN+VTY+ LID C ++ A++
Sbjct: 357 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGMMQGAIK 415
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + +G P+ F Y +++
Sbjct: 416 LFVDMRRTGLLPNEFTYTSLI 436
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ FTY L+ CK +LT + ++ M + G+K N+VTYT L+D +C + EA
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA-GVKLNIVTYTALLDGLCKAGRMIEA 483
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G P+ VY ++ GY
Sbjct: 484 EEVFRSMLKDGISPNQQVYTALVHGY 509
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P +FTYN ++ LCK L QMR +G+ P++VTY LID
Sbjct: 280 MIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR-EMGLSPDVVTYNSLIDGYGKVG 338
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L E L + + D G PD YN ++ Y
Sbjct: 339 SLEEVASLFNEMKDVGCVPDIITYNGLINCY 369
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + NFL+ L K + V F + M + GI P++ TY ++ID +C +L + R
Sbjct: 252 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGA-GIAPSVFTYNVMIDYLCKEGDLENSRR 310
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD YN+++ GY
Sbjct: 311 LFVQMREMGLSPDVVTYNSLIDGY 334
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ K SL V + ++M+ +G P+++TY LI+ C + + A
Sbjct: 320 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK-DVGCVPDIITYNGLINCYCKFEKMPRA 378
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
S + ++G KP+ Y+T++ +
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAF 404
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y L+ LCK + + D+M+ G+ P++ +T LID NL+EA
Sbjct: 635 LQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCR-GMTPDITAFTALIDGNLKHGNLQEA 693
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+S +++ + D VY +++ G+
Sbjct: 694 LVLISRMTELAIEFDLHVYTSLVSGF 719
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L P++ TY+ L+ CK + FVD R G+ PN TYT LID C NL E
Sbjct: 390 LKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRT--GLLPNEFTYTSLIDANCKAGNLTE 447
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A +L++ + +G K + Y ++ G
Sbjct: 448 AWKLLNDMLQAGVKLNIVTYTALLDG 473
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I TY L+ LCK + ++ +M SLG++PN+ YT LID +C + A +L
Sbjct: 604 IVTYCVLIDGLCKAGIVELAVDYFCRM-LSLGLQPNVAVYTSLIDGLCKNNCIESAKKLF 662
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G PD + ++ G
Sbjct: 663 DEMQCRGMTPDITAFTALIDG 683
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 22 KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81
K + NF +M+ +G++ +VTY +LID +C + A+ + G +P+
Sbjct: 581 KAGKSSDALNFFQEMQ-DVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNV 639
Query: 82 FVYNTIMKG 90
VY +++ G
Sbjct: 640 AVYTSLIDG 648
>gi|341606821|gb|AEK83513.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 205
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 11 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTYSVVVNG 93
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 40 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 98
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 99 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 128
>gi|341606955|gb|AEK83580.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 206
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 11 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTYSVVVNG 93
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GFAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 40 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 98
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +GF + Y++++ G
Sbjct: 99 RVEEALDYFQTCRFNGFAINSMFYSSLIDG 128
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN ++ LCK + V +M G PN +TY ILI+N C + + EA
Sbjct: 464 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK-GCHPNPITYNILIENFCRSNKMEEA 522
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ +S G PD +NT++ G+
Sbjct: 523 SKVIVKMSQEGLHPDAVSFNTLIYGF 548
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + ++FTYN ++ LC+ L VD MRA P++VTY LI +C
Sbjct: 215 VIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY--AVPDVVTYNTLIRGLCKKS 272
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EAM + + + G PD F YNTI+ GY
Sbjct: 273 MPQEAMHYLRRMMNQGCLPDDFTYNTIIDGY 303
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI YN LVK LC + +++M A G P++ TY I+I+ +C N+
Sbjct: 357 KGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM-AEEGCHPDIQTYNIVINGLCKMGNIS 415
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ G+ PD F +NT++ GY
Sbjct: 416 DATVVMNDAIMKGYLPDVFTFNTLIDGY 443
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCNTKNLREA 65
PD FTYN ++ CK ++ V + ++ ++ G P+ VTY LI+ +C ++ A
Sbjct: 291 PDDFTYNTIIDGYCK---ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 347
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KPD VYN+++KG
Sbjct: 348 LELFNEAQAKGIKPDIVVYNSLVKG 372
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK +++ ++ G P++ T+ LID C L A++
Sbjct: 396 PDIQTYNIVINGLCKMGNISDATVVMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQ 454
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + G PD YN+++ G
Sbjct: 455 LVERMWEYGIAPDTITYNSVLNG 477
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+FK PD TY L+ LC + ++ +A GIKP++V Y L+ +C
Sbjct: 320 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAK-GIKPDIVVYNSLVKGLCLQGL 378
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+++++ +++ G PD YN ++ G
Sbjct: 379 ILHALQVMNEMAEEGCHPDIQTYNIVING 407
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L++ LCK +++ +M + G P+ TY +ID C ++EA
Sbjct: 256 PDVVTYNTLIRGLCKKSMPQEAMHYLRRM-MNQGCLPDDFTYNTIIDGYCKISMVQEATE 314
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ GF PD Y +++ G
Sbjct: 315 LLKDAVFKGFVPDQVTYCSLING 337
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P+ TYN L++ C+ + + +M G+ P+ V++ LI C
Sbjct: 494 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE-GLHPDAVSFNTLIYGFCRNG 552
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L L + G+ +NT++ +
Sbjct: 553 DLEGAYLLFQKLEEKGYSATADTFNTLIGAF 583
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +N ++ LCK + + ++ G+ NL TY I I +C L EA+R
Sbjct: 187 PNLAAFNKVLHALCKRGDVLEAGLLLGKV-IQRGMSINLFTYNIWIRGLCEAGRLPEAVR 245
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + PD YNT+++G
Sbjct: 246 LVDGMRAYAV-PDVVTYNTLIRG 267
>gi|341605737|gb|AEK82971.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605739|gb|AEK82972.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605741|gb|AEK82973.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXN-GXAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRXNGXAINSMFYSSLIDG 131
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L P + T+ L+ C+ L D+MR GI P ++ YTILI +C+
Sbjct: 173 MISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVK-GIVPTVIVYTILIRGLCSDN 231
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + A+ + G P+ + YNT+M GY
Sbjct: 232 KIEEAESMHRAMREVGVYPNVYTYNTLMDGY 262
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+FTY+ L++ LC N ++M GI N VTY LID C + +
Sbjct: 352 EVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKE-GILANSVTYNSLIDGCCKEGKMDK 410
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ + S ++++G +P+ ++T++ GY
Sbjct: 411 ALEICSQMTENGVEPNVITFSTLIDGY 437
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ T++ L+ CK R+L +M + P++VTYT +ID C +++EA
Sbjct: 423 VEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIK-SLSPDVVTYTAMIDGHCKYGSMKEA 481
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++L S + D+G P+C+ + ++ G
Sbjct: 482 LKLYSDMLDNGITPNCYTISCLLDG 506
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ + L PD+ T+ L+ LCK + N FV+ ++ S + PN+ Y LID C
Sbjct: 278 MLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFS--VTPNIAVYNSLIDAYCKV 335
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ EAM L L PD F Y+ +++G
Sbjct: 336 GDVSEAMALFLELERFEVSPDVFTYSILIRG 366
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ CK + QM + G++PN++T++ LID C +NL+ AM + S
Sbjct: 394 TYNSLIDGCCKEGKMDKALEICSQMTEN-GVEPNVITFSTLIDGYCKIRNLQAAMGIYSE 452
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ PD Y ++ G+
Sbjct: 453 MVIKSLSPDVVTYTAMIDGH 472
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + Y L++ LC + + MR +G+ PN+ TY L+D C N +
Sbjct: 211 KGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMR-EVGVYPNVYTYNTLMDGYCKLANAK 269
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+RL + G PD + ++ G
Sbjct: 270 QALRLYQDMLGEGLVPDVVTFGILIDG 296
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN L+ CK + M G+ P++VT+ ILID +C ++ A
Sbjct: 250 PNVYTYNTLMDGYCKLANAKQALRLYQDMLGE-GLVPDVVTFGILIDGLCKFGEMKAARN 308
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + P+ VYN+++ Y
Sbjct: 309 LFVNMIKFSVTPNIAVYNSLIDAY 332
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ TY ++ CK S+ M + GI PN T + L+D +C
Sbjct: 453 MVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDN-GITPNCYTISCLLDGLCKDG 511
Query: 61 NLREAMRL 68
+ +A+ L
Sbjct: 512 KISDALEL 519
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMR--------ASLGIKPNL---VTYTILI 53
+ P+ +T + L+ LCK ++ F +++ + G KP+L V YT LI
Sbjct: 493 ITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALI 552
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C +A++L S + G +PD +Y +++G
Sbjct: 553 HGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRG 589
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ PD TYN ++ L K +L +F + +S +P TY LID +
Sbjct: 849 MISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSS-DFRPTPRTYGPLIDGLAKVG 907
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EAMRL +SD G KP+C ++N ++ GY
Sbjct: 908 RLEEAMRLFEEMSDYGCKPNCAIFNILINGY 938
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD YN ++ L K + + ++MR + GI P+L TY L+ N+ + +A
Sbjct: 994 LDPDFIAYNRIINGLGKSQRMEEALALYNEMR-NRGIVPDLYTYNSLMLNLGLAGMVEQA 1052
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R+ L +G +PD F YN +++GY
Sbjct: 1053 KRMYEELQLAGLEPDVFTYNALIRGY 1078
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+++T+ ++ L + + Y +M G P+LVTYT+LID +CN L A
Sbjct: 258 LRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE-GCGPDLVTYTVLIDALCNAGQLENA 316
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G KPD +Y T++ +
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKF 342
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ +Y LV CLC + + ++++ S G+ P+ + Y +I+ + ++
Sbjct: 954 MVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELK-STGLDPDFIAYNRIINGLGKSQ 1012
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+ L + + + G PD + YN++M
Sbjct: 1013 RMEEALALYNEMRNRGIVPDLYTYNSLM 1040
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ LV LCK R + D MR GI PNL TY LI + + +A++
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQ-GILPNLHTYNTLICGLLRAGRIEDALK 423
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G +P + Y T +
Sbjct: 424 LLDTMESVGVQPTAYTYITFI 444
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++KC K + N + +M + G +P+++ LID++ + EA
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRN-GCEPDVIVVNSLIDSLYKAGRVDEA 561
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + D P YNT++ G
Sbjct: 562 WQMFDRMKDMKLSPTVVTYNTLLSG 586
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N L+ K T +M + GI+P+L +YTIL+D +C + EA+
Sbjct: 926 PNCAIFNILINGYGKIGDTETACQLFKRM-VNEGIRPDLKSYTILVDCLCLAGRVDEALY 984
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L +G PD YN I+ G
Sbjct: 985 YFNELKSTGLDPDFIAYNRIING 1007
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ L T F QM A G P++VT+TIL+D +C ++ EA
Sbjct: 330 PDQVIYITLLDKFNDFGDLDTFKEFWSQMEAD-GYMPDVVTFTILVDVLCKARDFDEAFA 388
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G P+ YNT++ G
Sbjct: 389 TFDVMRKQGILPNLHTYNTLICG 411
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
LV+ LCK + Y D+ LGI P L +Y LI + +A L + +
Sbjct: 758 LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817
Query: 76 GFKPDCFVYNTIM 88
G PD F +N ++
Sbjct: 818 GCAPDAFTFNMLL 830
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P +TY + K ++M+A GI PN+V + ++ LREA
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAK-GIVPNIVACNASLYSLAEMGRLREA 491
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + L ++G PD YN +MK Y
Sbjct: 492 KTMFNGLRENGLAPDSVTYNMMMKCY 517
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LC L +M+A+ G KP+ V Y L+D + +L
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKAN-GHKPDQVIYITLLDKFNDFGDLDTFKE 353
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
S + G+ PD + ++
Sbjct: 354 FWSQMEADGYMPDVVTFTILV 374
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + TYN L+ L K + + M PN +++ L+D C +
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXK-KCSPNTISFNTLLDCFCKNDEVEL 630
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+++ S ++ KPD YNT++ G
Sbjct: 631 ALKMFSKMTVMDCKPDVLTYNTVIYG 656
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I N + L + L + +R + G+ P+ VTY +++ +
Sbjct: 466 KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLREN-GLAPDSVTYNMMMKCYSKVGQVD 524
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ L+S + +G +PD V N+++
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLI 549
>gi|399107192|gb|AFP20360.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 133
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY+ L+ LCK + + D+M G+ PN VT+T LID C L AM
Sbjct: 204 PDVYTYSVLINGLCKESKMDEAHELFDEMLEK-GLVPNGVTFTTLIDGHCKNGKLDLAME 262
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD YNT++ G+
Sbjct: 263 IYKQILSQGLSPDLITYNTLIYGF 286
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 2 IFKQ-----LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I+KQ L PD+ TYN L+ CK L + +D+M G+KP+ +TYT LID
Sbjct: 263 IYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMK-GLKPDKITYTTLIDGS 321
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +L A + + + D VY ++ G
Sbjct: 322 CKEGDLETAFEYRKKMIEENIRLDDVVYTALISG 355
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ K L + + M AS G +P++ TY++LI+ +C + EA
Sbjct: 167 LKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHAS-GAQPDVYTYSVLINGLCKESKMDEA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ + T++ G+
Sbjct: 226 HELFDEMLEKGLVPNGVTFTTLIDGH 251
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY L+ CK L T + + +M I+ + V YT LI +C
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEE-NIRLDDVVYTALISGLCKEGRSV 363
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ + G KPD Y +M +
Sbjct: 364 DAEKMLREMLSVGLKPDSGTYTIVMNEF 391
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + D + G+KP++V++ L++ L E
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLAQLVFDAI-TKWGLKPSVVSFNTLMNGYIKMGILDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL +A+ SG +PD + Y+ ++ G
Sbjct: 192 RLKNAMHASGAQPDVYTYSVLING 215
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 20 LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKP 79
L K + V+ F ++ G +L + IL+ C +R A + A++ G KP
Sbjct: 111 LMKLKYFKLVWGFYKEI-LECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKP 169
Query: 80 DCFVYNTIMKGY 91
+NT+M GY
Sbjct: 170 SVVSFNTLMNGY 181
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+FTY+ L+ LC ++M SL I P++VT+ IL+D +C L
Sbjct: 253 KGVRPDVFTYSILMHGLCNSDQKEEASALFNEM-MSLNIMPDVVTFNILVDKLCKEGMLS 311
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + + G +P+ YN++M GY
Sbjct: 312 EAQGIIKIMIEKGVEPNYATYNSLMNGY 339
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++K CK T + +M + G +P++V Y +ID +C + + EA+
Sbjct: 187 PNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGG-RPDIVIYNTIIDGLCKDRLVSEALD 245
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S + G +PD F Y+ +M G
Sbjct: 246 IFSEIKGKGVRPDVFTYSILMHG 268
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ L P+ F YN L+ LC+ M+A G P+LVT TIL+D++C L
Sbjct: 392 FRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQ-GCSPDLVTCTILLDSLCKLGYL 450
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL A+ DS KP+ Y+ +++
Sbjct: 451 DNALRLFRAMQDSCLKPNLVTYDILIRA 478
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ D+F +N L+ C + + + ++ + ++ LG +P+ VT++ LI+ +C
Sbjct: 114 RIERDVFHFNILINCFSRLQRVDFAFSVLGKI-IKLGFEPDAVTFSSLINGLCFEDKFAR 172
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM + SG++P+ YNTI+KG+
Sbjct: 173 AMEFFDEMVASGYQPNLHTYNTIIKGF 199
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T++ L+ LC F D+M AS G +PNL TY +I C A+
Sbjct: 151 EPDAVTFSSLINGLCFEDKFARAMEFFDEMVAS-GYQPNLHTYNTIIKGFCKIGKTTVAV 209
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G +PD +YNTI+ G
Sbjct: 210 GLLKKMDKAGGRPDIVIYNTIIDG 233
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+ TYN L+ C + D M + G PN+V+Y ILI+ C +
Sbjct: 320 MIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAM-ITKGCMPNVVSYNILINGYCKAQ 378
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L +S G P+ F YNT++ G
Sbjct: 379 RIDEARELFDEMSFRGLIPNTFNYNTLISG 408
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N LV LCK L+ + M G++PN TY L++ C + EA
Sbjct: 292 PDVVTFNILVDKLCKEGMLSEAQGIIKIM-IEKGVEPNYATYNSLMNGYCLQNKVFEARM 350
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ G P+ YN ++ GY
Sbjct: 351 VFDAMITKGCMPNVVSYNILINGY 374
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ CK + D M +G+KP+++TY LID C +
Sbjct: 308 RGLEPDIATYRTLLQGHCKEGRVIESEKLFDLM-VRIGVKPDIITYNTLIDGCCLAGKMD 366
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L++++ G KPD Y T++ GY
Sbjct: 367 EATKLLASMVSVGVKPDIVTYGTLINGY 394
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ C + + M S+G+KP++VTY LI+ C + +A+
Sbjct: 347 PDIITYNTLIDGCCLAGKMDEATKLLASM-VSVGVKPDIVTYGTLINGYCRVSRMDDALA 405
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG P+ YN I++G
Sbjct: 406 LFKEMVSSGVSPNIITYNIILQG 428
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ C + +MR+ G++PN+VTY+ L++ +C EA +
Sbjct: 242 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD-GVEPNVVTYSSLMNYLCKNGRSTEARK 300
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G +PD Y T+++G+
Sbjct: 301 IFDSMTKRGLEPDIATYRTLLQGH 324
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK T D M G++P++ TY L+ C + E+ +
Sbjct: 277 PNVVTYSSLMNYLCKNGRSTEARKIFDSM-TKRGLEPDIATYRTLLQGHCKEGRVIESEK 335
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G KPD YNT++ G
Sbjct: 336 LFDLMVRIGVKPDIITYNTLIDG 358
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY L+ C+ + +M +S G+ PN++TY I++ + +T+ A
Sbjct: 382 PDIVTYGTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRRTAAAKE 440
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +++ SG + + YN I+ G
Sbjct: 441 LYVSITKSGTQLELSTYNIILHG 463
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D T+ L+K LC + + + V + LG P++ +Y L+ +C+ +EA+ L
Sbjct: 126 DAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185
Query: 69 VSALSDS---GFKPDCFVYNTIMKGY 91
+ ++D G PD YNT++ G+
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGF 211
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKPNLVTY-TIL-------IDNVC 57
PD+F+YN L+K LC + M G P++V+Y T+L I
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKL 220
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +AM +++ + +G PDC YN+I+ GY
Sbjct: 221 TAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 254
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + TY L+ C C+ L + + + G + + +T+T L+ +C K +
Sbjct: 87 KVTPTVHTYAILIGCCCRAGRLDLGFAALGNV-VKKGFRVDAITFTPLLKGLCADKRTSD 145
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ G PD F YN ++KG
Sbjct: 146 AMDIVLRRMTELGCIPDVFSYNNLLKG 172
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 7 PPDIFTYNFLVKCLCK--------CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
PPD+ +YN ++ K +++ ++ M + G+ P+ +TY ++ C+
Sbjct: 198 PPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCS 256
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +EA+ + + G +P+ Y+++M
Sbjct: 257 SGQPKEAIGTLKKMRSDGVEPNVVTYSSLM 286
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N ++ L KC + + A+ G+ P++ TY+++ +N+ +L E L +
Sbjct: 491 TFNIMIGALLKCGRMDEAKDLFAAHSAN-GLVPDVRTYSLMAENLIEQGSLEELDDLFLS 549
Query: 72 LSDSGFKPDCFVYNTIMK 89
+ ++G D + N+I++
Sbjct: 550 MEENGCSADSRMLNSIVR 567
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ PD TYN ++ L K +L +F + +S +P TY LID +
Sbjct: 849 MISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSS-DFRPTPRTYGPLIDGLAKVG 907
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EAMRL +SD G KP+C ++N ++ GY
Sbjct: 908 RLEEAMRLFEEMSDYGCKPNCAIFNILINGY 938
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD YN ++ L K + + ++MR + GI P+L TY L+ N+ + +A
Sbjct: 994 LDPDFIAYNRIINGLGKSQRMEEALALYNEMR-NRGIVPDLYTYNSLMLNLGLAGMVEQA 1052
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R+ L +G +PD F YN +++GY
Sbjct: 1053 KRMYEELQLAGLEPDVFTYNALIRGY 1078
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+++T+ ++ L + + Y +M G P+LVTYT+LID +CN L A
Sbjct: 258 LRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE-GCGPDLVTYTVLIDALCNAGQLENA 316
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G KPD +Y T++ +
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKF 342
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ LV LCK R + D MR GI PNL TY LI + + +A++
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQ-GILPNLHTYNTLICGLLRAGRIEDALK 423
Query: 68 LVSALSDSGFKPDCFVYN 85
L+ + G +P + YN
Sbjct: 424 LLGTMESVGVQPTAYTYN 441
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ +Y LV CLC + + ++++ S G+ P+ + Y +I+ + ++
Sbjct: 954 MVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELK-STGLDPDFIAYNRIINGLGKSQ 1012
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+ L + + + G PD + YN++M
Sbjct: 1013 RMEEALALYNEMRNRGIVPDLYTYNSLM 1040
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++KC K + N + +M + G +P+++ LID++ + EA
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRN-GCEPDVIVVNSLIDSLYKAGRVDEA 561
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + D P YNT++ G
Sbjct: 562 WQMFDRMKDMKLSPTVVTYNTLLSG 586
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N L+ K T +M + GI+P+L +YTIL+D +C + EA+
Sbjct: 926 PNCAIFNILINGYGKIGDTETACQLFKRM-VNEGIRPDLKSYTILVDCLCLAGRVDEALY 984
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L +G PD YN I+ G
Sbjct: 985 YFNELKSTGLDPDFIAYNRIING 1007
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ L T F QM A G P++VT+TIL+D +C ++ EA
Sbjct: 330 PDQVIYITLLDKFNDFGDLDTFKEFWSQMEAD-GYMPDVVTFTILVDVLCKARDFDEAFA 388
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G P+ YNT++ G
Sbjct: 389 TFDVMRKQGILPNLHTYNTLICG 411
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P +TYN + K ++M+A GI PN+V + ++ LREA
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAK-GIVPNIVACNASLYSLAEMGRLREA 491
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + L ++G PD YN +MK Y
Sbjct: 492 KTMFNGLRENGLAPDSVTYNMMMKCY 517
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
LV+ LCK + Y D+ LGI P L +Y LI + +A L + +
Sbjct: 758 LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817
Query: 76 GFKPDCFVYNTIM 88
G PD F +N ++
Sbjct: 818 GCAPDAFTFNMLL 830
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LC L +M+A+ G KP+ V Y L+D + +L
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKAN-GHKPDQVIYITLLDKFNDFGDLDTFKE 353
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
S + G+ PD + ++
Sbjct: 354 FWSQMEADGYMPDVVTFTILV 374
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + TYN L+ L K + + M PN +++ L+D C +
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIELFESM-IEKKCSPNTISFNTLLDCFCKNDEVEL 630
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+++ S ++ KPD YNT++ G
Sbjct: 631 ALKMFSKMTVMDCKPDVLTYNTVIYG 656
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I N + L + L + +R + G+ P+ VTY +++ +
Sbjct: 466 KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLREN-GLAPDSVTYNMMMKCYSKVGQVD 524
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ L+S + +G +PD V N+++
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLI 549
>gi|341605745|gb|AEK82975.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXN-GFAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +GF + Y++++ G
Sbjct: 102 RVEEALDYFQTCRXNGFAINSMFYSSLIDG 131
>gi|341605743|gb|AEK82974.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605753|gb|AEK82979.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605831|gb|AEK83018.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GXAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGXAINSMFYSSLIDG 131
>gi|399107188|gb|AFP20358.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GXAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGXAINSMFYSSLIDG 133
>gi|341605711|gb|AEK82958.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605785|gb|AEK82995.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605787|gb|AEK82996.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605789|gb|AEK82997.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605793|gb|AEK82999.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605795|gb|AEK83000.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 131
>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 605
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + TYN L+ +C S + +D+M G+KPN VTY +++ +
Sbjct: 183 KLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGK-GVKPNAVTYNVVVKWYVKEGKMDN 241
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + +SGF PDC +NT+ GY
Sbjct: 242 AGNELRKMEESGFSPDCVTFNTLSNGY 268
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L CK L+ + +D+M + G+K N VT ++ +C + L +A +
Sbjct: 256 PDCVTFNTLSNGYCKAGRLSEAFRMMDEM-SRKGLKMNSVTLNTILHTLCGERKLDDAYK 314
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S+ S G+ D Y T++ GY
Sbjct: 315 LLSSASKRGYFVDEVSYGTLIMGY 338
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK + + D+M +L + P++VTY +LI+ + +
Sbjct: 151 PDVRTYTTLIGGLCKDGKIDEAFRLRDEME-NLKLLPHVVTYNMLINGCFECSSSLKGFE 209
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G KP+ YN ++K Y
Sbjct: 210 LIDEMEGKGVKPNAVTYNVVVKWY 233
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+FT N LV+ LC L + S G + VT+ +I +C
Sbjct: 420 MVKKSFKPDLFTCNILVRGLCTEGMLDKALKLF-KTWISKGKAIDAVTFNTIISGLCEEG 478
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
EA L++ + + PDC+ +N I+
Sbjct: 479 RFEEAFDLLAEMEEKKLGPDCYTHNAIL 506
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN +VK K + N + +M S G P+ VT+ L + C L
Sbjct: 217 KGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEES-GFSPDCVTFNTLSNGYCKAGRLS 275
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA R++ +S G K + NTI+
Sbjct: 276 EAFRMMDEMSRKGLKMNSVTLNTIL 300
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN ++ LCK L + + M+ + G+ PN T+ IL+ C L+EA
Sbjct: 81 PDNVSYNTILDVLCKKGKLNEARDLLLDMKNN-GLFPNRNTFNILVSGYCKLGWLKEAAE 139
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ + PD Y T++ G
Sbjct: 140 VIDIMARNNVLPDVRTYTTLIGG 162
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N LV CK L +D M A + P++ TYT LI +C + EA R
Sbjct: 116 PNRNTFNILVSGYCKLGWLKEAAEVIDIM-ARNNVLPDVRTYTTLIGGLCKDGKIDEAFR 174
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + P YN ++ G
Sbjct: 175 LRDEMENLKLLPHVVTYNMLING 197
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L PD TYN ++ C+ + ++F ++M KP+L T IL+ +C
Sbjct: 385 LLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKM-VKKSFKPDLFTCNILVRGLCTEG 443
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A++L G D +NTI+ G
Sbjct: 444 MLDKALKLFKTWISKGKAIDAVTFNTIISG 473
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ P I TY ++ LC+ + +++ S G+ P+ TY +I C +
Sbjct: 353 KEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLES-GLVPDQTTYNTIILGYCREGQVD 411
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + FKPD F N +++G
Sbjct: 412 KAFHFRNKMVKKSFKPDLFTCNILVRG 438
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVY----NFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L P++ T N L+K L + S +VY F D ++ LG++ N T+ ILI C
Sbjct: 5 HLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIK--LGVEVNTNTFNILICGCCIEN 62
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA+ L+ + PD YNTI+
Sbjct: 63 KLSEAIGLIGKMKHFSCFPDNVSYNTIL 90
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 34 DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
D+M+ I P+++TY +I +C + +++ + L +SG PD YNTI+ GY
Sbjct: 348 DEMKEK-EIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGY 404
>gi|399107212|gb|AFP20370.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 133
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ CK + N V++M AS G P+L TY I I C+++ + A
Sbjct: 682 LSPDIITYNTLINGYCKAFDMVNADNLVNRMYAS-GSNPDLTTYNIRIHGFCSSRRMNRA 740
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ L +G P+ YN+++ G
Sbjct: 741 VLMLDELVSAGIVPNTVTYNSMLNG 765
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ F YN L+ CKC L MR G+ P++ T ++I +C
Sbjct: 607 MLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHR-GLLPDIFTTNMIIGGLCKQG 665
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+R A+ + + +G PD YNT++ GY
Sbjct: 666 RMRSAINVFMDMHQTGLSPDIITYNTLINGY 696
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDIFT N ++ LCK + + N M + G+ P+++TY LI+ C ++
Sbjct: 645 RGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQT-GLSPDIITYNTLINGYCKAFDMV 703
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A LV+ + SG PD YN + G+
Sbjct: 704 NADNLVNRMYASGSNPDLTTYNIRIHGF 731
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLC-KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+ F YN ++ C + R+ + F + G P +VT+ +I+ C N+ EA
Sbjct: 299 PNAFAYNIVINACCIRGRTSDALAWF--NLMIERGCNPTVVTFNTVINAFCKEGNVVEAR 356
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+L L + GF P+ +YNT+M GY
Sbjct: 357 KLFDGLKEMGFSPNAIMYNTLMNGY 381
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN + C R + +D++ S GI PN VTY +++ VC + L AM
Sbjct: 719 PDLTTYNIRIHGFCSSRRMNRAVLMLDEL-VSAGIVPNTVTYNSMLNGVC-SDILDRAMI 776
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + L F P+ N ++ +
Sbjct: 777 LTARLLKMAFVPNVVTANLLLSQF 800
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N ++ CK ++ D ++ +G PN + Y L++ + + +A
Sbjct: 334 PTVVTFNTVINAFCKEGNVVEARKLFDGLK-EMGFSPNAIMYNTLMNGYVKMREIDQANM 392
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD +N ++ G+
Sbjct: 393 LYEEMRKKGIAPDGITFNILVSGH 416
>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Glycine max]
Length = 1012
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + DI TYN L++ C + +N QM S GI PN+ TY L++ +
Sbjct: 716 MVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVS-GISPNITTYNALLEGLSTNG 774
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+A +LVS + + G P+ YN ++ G+
Sbjct: 775 LMRDADKLVSEMRERGLVPNATTYNILVSGH 805
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+I TYN L++ L + V +MR G+ PN TY IL+
Sbjct: 751 MLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRER-GLVPNATTYNILVSGHGRVG 809
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N R++++L + GF P YN +++ Y
Sbjct: 810 NKRDSIKLYCEMITKGFIPTTGTYNVLIQDY 840
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L P + T+ L+ CK R + ++ +QM S G+ P++VT + ++ +C L
Sbjct: 229 LRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMS-GVMPDVVTCSSILYGLCRHGKL 287
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
EA L+ + + G P+ Y TI+
Sbjct: 288 TEAAMLLREMYNMGLDPNHVSYTTII 313
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F Y L+ + F +M+ S G++ N + + IL++N+ + ++EA
Sbjct: 444 PNVFVYAILLDGYFRTGQHEAAAGFYKEMK-SWGLEENNIIFDILLNNLKRSGGMKEAQS 502
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G D F Y+++M GY
Sbjct: 503 LIKDILSKGIYLDVFNYSSLMDGY 526
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ + +++M+ S G+ PN+VTY ILI +C T + +
Sbjct: 581 LTPDCVTYNSVMNTYFIQGKTENALDLLNEMK-SYGVMPNMVTYNILIGGLCKTGAIEKV 639
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ + G+ P ++ ++K Y
Sbjct: 640 ISVLHEMLAVGYVPTPIIHKFLLKAY 665
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T + ++ LC+ LT + +M ++G+ PN V+YT +I + +
Sbjct: 262 MIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMY-NMGLDPNHVSYTTIISALLKSG 320
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA S + G D + T+M G
Sbjct: 321 RVMEAFNHQSQMVVRGISIDLVLCTTMMDG 350
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK ++ V + + +M A +G P + + L+ ++ ++
Sbjct: 618 PNMVTYNILIGGLCKTGAIEKVISVLHEMLA-VGYVPTPIIHKFLLKAYSRSRKADAILQ 676
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ L D G + VYNT++
Sbjct: 677 IHKKLVDMGLNLNQMVYNTLI 697
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ +P D N LV C+ ++ + V+ + G+KP++VTY L++ C
Sbjct: 136 LVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKN-GVKPDIVTYNTLVNAFCKRG 194
Query: 61 NLREAMRLVSAL------SDSGFKPDCFV 83
+L +A +V+ + +SG DC V
Sbjct: 195 DLAKAESVVNEILGFRRDDESGVLNDCGV 223
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 26/108 (24%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-----------------------I 42
+ PDI TYN LV CK L + V+++ LG +
Sbjct: 176 VKPDIVTYNTLVNAFCKRGDLAKAESVVNEI---LGFRRDDESGVLNDCGVETWDGLRDL 232
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+P +VT+T LI C + + + L + SG PD ++I+ G
Sbjct: 233 QPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYG 280
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY L+ CK + + +M + PN+VT++ +I+ L +A
Sbjct: 372 LVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKE-HVLPNVVTFSSIINGYAKKGMLNKA 430
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ + P+ FVY ++ GY
Sbjct: 431 VEVLRKMVQMNIMPNVFVYAILLDGY 456
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ +Y ++ L K + +N QM GI +LV T ++D + +EA
Sbjct: 302 LDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVR-GISIDLVLCTTMMDGLFKAGKSKEA 360
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + P+C Y ++ G+
Sbjct: 361 EEMFQTILKLNLVPNCVTYTALLDGH 386
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D T N LVK C+ L ++ G+ + + L+D C + A+ L
Sbjct: 109 DSVTCNILVKGYCQI-GLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDL 167
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
V +G KPD YNT++ +
Sbjct: 168 VEDGWKNGVKPDIVTYNTLVNAF 190
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K +L+ + +M G PN+VTY ILI +N + A
Sbjct: 484 LSPDTFTYSVMINCLGKSGNLSAAHRLFCEM-VDQGCVPNIVTYNILIALQAKARNYQTA 542
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+ L + ++GFKPD Y+ +M+
Sbjct: 543 LELYRDMQNAGFKPDKVTYSIVME 566
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ + L N +QM+ +G +P+ VTY LID L AM
Sbjct: 416 PNVVTYNRLIHSYGRANYLREALNVFNQMQ-EMGCEPDRVTYCTLIDIHAKAGFLDVAMS 474
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + G PD F Y+ ++
Sbjct: 475 MYERMQEVGLSPDTFTYSVMI 495
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + R + ++QM G +PN+VTY LI + LREA+ +
Sbjct: 382 DGHTYTTMVGILGRAREFGAINKLLEQMVKD-GCQPNVVTYNRLIHSYGRANYLREALNV 440
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + + G +PD Y T++
Sbjct: 441 FNQMQEMGCEPDRVTYCTLI 460
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ K L + ++M+ +G+ P+ TY+++I+ + + NL A R
Sbjct: 451 PDRVTYCTLIDIHAKAGFLDVAMSMYERMQ-EVGLSPDTFTYSVMINCLGKSGNLSAAHR 509
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + D G P+ YN ++
Sbjct: 510 LFCEMVDQGCVPNIVTYNILI 530
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN L+ K R+ T M+ + G KP+ VTY+I+++ + + L EA
Sbjct: 521 PNIVTYNILIALQAKARNYQTALELYRDMQNA-GFKPDKVTYSIVMEVLGHCGYLEEAEA 579
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 580 VFFEMRQNHWVPDEPVYGLLV 600
>gi|341605763|gb|AEK82984.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSIFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSIFYSSLIDG 131
>gi|341605721|gb|AEK82963.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605821|gb|AEK83013.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSMFYSSLIXG 131
>gi|341605775|gb|AEK82990.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605807|gb|AEK83006.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 131
>gi|399107208|gb|AFP20368.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGXVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 XVEEALDYFQTCRFNGLAINSXFYSSLIDG 133
>gi|341605691|gb|AEK82948.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605825|gb|AEK83015.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK L F +M+ S G+KPN+V+Y+ L+D C +++A++
Sbjct: 201 PDVITYNTLINCFCKFGKLPKGLEFFREMKQS-GLKPNVVSYSTLVDAFCKEDMMQQALK 259
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y +++ Y
Sbjct: 260 FYVDMRRLGLVPNEHTYTSLVDAY 283
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY LV CK +L+ + D+M + +G++ N+VTYT LID +C+ + ++EA
Sbjct: 269 LVPNEHTYTSLVDAYCKIGNLSDAFRLADEM-SQVGVEWNVVTYTALIDGLCDVERIKEA 327
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G P+ Y ++ G+
Sbjct: 328 EELFGKMVTAGVIPNLASYTALIHGF 353
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ +Y+ LV CK + F MR LG+ PN TYT L+D C NL +A
Sbjct: 234 LKPNVVSYSTLVDAFCKEDMMQQALKFYVDMR-RLGLVPNEHTYTSLVDAYCKIGNLSDA 292
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL +S G + + Y ++ G
Sbjct: 293 FRLADEMSQVGVEWNVVTYTALIDG 317
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ L PD TYN ++ K L F ++M+ S+ +P+++TY LI+ C L
Sbjct: 161 FRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMK-SMSCEPDVITYNTLINCFCKFGKL 219
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + SG KP+ Y+T++ +
Sbjct: 220 PKGLEFFREMKQSGLKPNVVSYSTLVDAF 248
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y L+ K +++ +D+M+ GIKP+L+ Y I ++C + + A
Sbjct: 341 PNLASYTALIHGFVKAKNMDRALELLDEMKGR-GIKPDLLLYGTFIWSLCGLEKIEAAKV 399
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + G K + F+Y T+M Y
Sbjct: 400 VMNEMQEKGIKANTFIYTTLMDAY 423
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +FTYN ++ C+CK + ++M+ G+ P+ VTY +ID L + +
Sbjct: 131 PTVFTYNIMIDCMCKEGDIEAASGLFEEMKFR-GLIPDTVTYNSMIDGYGKVGRLDDTVY 189
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +PD YNT++ +
Sbjct: 190 FFEEMKSMSCEPDVITYNTLINCF 213
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TY L+ LC + +M + G+ PNL +YT LI KN+ A+ L
Sbjct: 307 NVVTYTALIDGLCDVERIKEAEELFGKM-VTAGVIPNLASYTALIHGFVKAKNMDRALEL 365
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G KPD +Y T +
Sbjct: 366 LDEMKGRGIKPDLLLYGTFI 385
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+ L+ LCK + ++ ++ ++ G++ N YT +ID +C + A L
Sbjct: 450 TFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQ 509
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ G PD Y +++ G
Sbjct: 510 MAQKGLVPDRTAYTSLIDG 528
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G KP + TY I+ID +C ++ A L + G PD YN+++ GY
Sbjct: 128 GSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGY 178
>gi|399107204|gb|AFP20366.1| At1g03560-like protein, partial [Capsella grandiflora]
gi|399107210|gb|AFP20369.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 133
>gi|399107190|gb|AFP20359.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSIFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGLAINSIFYSSLIDG 133
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
KQ+ PD+ TY+ L+ LCK ++ VD+M G +P+++TY ++D +C ++
Sbjct: 502 KQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYR-GQQPDIITYNSILDALCKKHHVD 560
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ L G +PD Y ++KG
Sbjct: 561 KAITLLTKLKGQGIRPDMNTYTILVKG 587
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD+FTYN L+ C L + ++M S I P++ T++IL+D C N++
Sbjct: 362 KRIFPDVFTYNALISGFCIVGKLKDAIDLFNKM-TSKNIIPDVYTFSILVDGFCKDGNIK 420
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +++ + KPD Y+++M GY
Sbjct: 421 EAKNVLAMMMKQSIKPDVVTYSSLMDGY 448
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
++ PDI TYN ++ LCK + + +++ GI+P++ TYTIL+ +C + L
Sbjct: 536 YRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQ-GIRPDMNTYTILVKGLCQSGKL 594
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ L G+ D + Y +++G+
Sbjct: 595 EDARKVFEDLLVKGYNLDVYAYTVMIQGF 623
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD++T++ LV CK ++ N + M IKP++VTY+ L+D C +
Sbjct: 397 KNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ-SIKPDVVTYSSLMDGYCLVNEVN 455
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + + +S G + YN ++ G+
Sbjct: 456 KAESIFNTMSHRGVTANVQSYNIMINGF 483
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TY+ L+ C + + + M + G+ N+ +Y I+I+ C K +
Sbjct: 432 QSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTM-SHRGVTANVQSYNIMINGFCKIKMVD 490
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM+L + PD Y++++ G
Sbjct: 491 EAMKLFKEMHHKQIFPDVITYSSLIDG 517
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ YN ++ +CK + + ++ + + S I P++ TY LI C L+
Sbjct: 327 KLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSE-KVSKRIFPDVFTYNALISGFCIVGKLK 385
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L + ++ PD + ++ ++ G+
Sbjct: 386 DAIDLFNKMTSKNIIPDVYTFSILVDGF 413
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK + + L ++P++V Y +ID +C K++ +A L
Sbjct: 297 DQVSYGTLINGLCKVGETKAALELLRRNDGKL-VQPDVVMYNTIIDGMCKDKHVNDAFDL 355
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S PD F YN ++ G+
Sbjct: 356 YSEKVSKRIFPDVFTYNALISGF 378
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TY LVK LC+ L + + G ++ YT++I C+
Sbjct: 572 QGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVK-GYNLDVYAYTVMIQGFCDKGLFD 630
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ L+S + ++G PD Y I+
Sbjct: 631 EALALLSKMEENGCIPDAKTYEIII 655
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T +K C + +F D++ A +G + V+Y LI+ +C + A+
Sbjct: 260 EPDTITLTTFIKGFCLKGQIHQALHFHDKVIA-MGFHLDQVSYGTLINGLCKVGETKAAL 318
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ +PD +YNTI+ G
Sbjct: 319 ELLRRNDGKLVQPDVVMYNTIIDG 342
>gi|341605773|gb|AEK82989.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GXAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGXAINSXFYSSLIDG 131
>gi|341605731|gb|AEK82968.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605733|gb|AEK82969.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605735|gb|AEK82970.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXN-GXAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRXNGXAINSMFYSSLIDG 131
>gi|399107206|gb|AFP20367.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 133
>gi|399107200|gb|AFP20364.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GXAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGXAINSMFYSSLIDG 133
>gi|341605777|gb|AEK82991.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605779|gb|AEK82992.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605809|gb|AEK83007.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605811|gb|AEK83008.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 131
>gi|399107194|gb|AFP20361.1| At1g03560-like protein, partial [Capsella grandiflora]
gi|399107216|gb|AFP20372.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCXFNGLAINSMFYSSLIDG 133
>gi|341605765|gb|AEK82985.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605767|gb|AEK82986.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605769|gb|AEK82987.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605771|gb|AEK82988.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSIFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSIFYSSLIDG 131
>gi|341605723|gb|AEK82964.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSMFYSSLIXG 131
>gi|260766045|gb|ACX50053.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 187
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 2 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 58
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 59 AIRLLHRMIDEGFKPDVVTYSVVVNG 84
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 66 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 124
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 125 RIDEAERLFEEMSEKGCTRDSYCYNALI 152
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 31 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 89
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 90 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 119
>gi|399107198|gb|AFP20363.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKPDVVTYSVVVNG 98
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 80 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GFAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +GF + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGFAINSMFYSSLIDG 133
>gi|341605701|gb|AEK82953.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ Q G+ N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCXFNGLAINSXFYSSLIDG 131
>gi|260780324|gb|ACX50708.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780342|gb|ACX50717.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780358|gb|ACX50725.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780388|gb|ACX50740.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKQGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ CK R++ + +D+M S G+K + T L+ N+C K EA
Sbjct: 417 LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRS-GLKMDTFTLNTLLYNLCKEKRYEEA 475
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + GF PD Y T+M Y
Sbjct: 476 EELLRSPPQRGFVPDEVSYGTVMAAY 501
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV K + + N +++MR G+K +LVT+ I++ +C L EA+
Sbjct: 349 PDVVTYNTLVDACFKYQRSSDALNLLEEMRDK-GVKSSLVTHNIVVKGLCREGQLEEALG 407
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G PD YNT++ Y
Sbjct: 408 RLKMMTEEGLAPDVITYNTLIDAY 431
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P I+TYN L+K LC LT + ++++ G+ P+ TY I+I C +L
Sbjct: 520 RKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKK-GLVPDDTTYNIIIHAYCKEGDLE 578
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + + ++ FKPD NT+M G
Sbjct: 579 KAFQFHNKMLENYFKPDVVTCNTLMNG 605
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L LC+ + + D+M + P++VTY L+D + +A+
Sbjct: 313 PDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALN 372
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D G K +N ++KG
Sbjct: 373 LLEEMRDKGVKSSLVTHNIVVKG 395
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+K C+ L + +M+ GI P TY L+ +++A
Sbjct: 241 LSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKE-GIAPTRATYNTLVSAYARLGWIKQA 299
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+V A++ GF+PD + YN + G
Sbjct: 300 TNVVEAMTAFGFEPDLWTYNVLAAG 324
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L PD TYN ++ CK L + F ++M + KP++VT L++ +C
Sbjct: 552 LMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENY-FKPDVVTCNTLMNGLCLHG 610
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A++L + ++ G K D YNT+++
Sbjct: 611 KLEKAIKLFESWAEKGKKVDVITYNTLIQA 640
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + + T+N +VK LC+ L + +M G+ P+++TY LID C +N+
Sbjct: 380 KGVKSSLVTHNIVVKGLCREGQLEEALGRL-KMMTEEGLAPDVITYNTLIDAYCKARNVA 438
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ + SG K D F NT++
Sbjct: 439 KAFVLMDEMVRSGLKMDTFTLNTLL 463
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI +L P+ +T+N LV C +L + + M+ G+ P++VTY L+ C
Sbjct: 201 LIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQG-FGLSPDVVTYNTLLKAHCRKG 259
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA L++ + G P YNT++ Y
Sbjct: 260 MLGEARTLLARMKKEGIAPTRATYNTLVSAY 290
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L++ LCK + T +F M A G++P+ TY +++ + EA +
Sbjct: 630 DVITYNTLIQALCKDGDVDTALHFFADMEAR-GLQPDAFTYNVVLSALSEAGRSEEAQNM 688
Query: 69 VSALSDSGFKPDCFVYNTI 87
+ L +SG + F Y I
Sbjct: 689 LHKLDESGKLSERFSYPLI 707
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T N L+ LC L + A G K +++TY LI +C ++ A+
Sbjct: 594 PDVVTCNTLMNGLCLHGKLEKAIKLFESW-AEKGKKVDVITYNTLIQALCKDGDVDTALH 652
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +PD F YN ++
Sbjct: 653 FFADMEARGLQPDAFTYNVVL 673
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TYN LV + + N V+ M A G +P+L TY +L +C + EA
Sbjct: 276 IAPTRATYNTLVSAYARLGWIKQATNVVEAMTA-FGFEPDLWTYNVLAAGLCQAGKVDEA 334
Query: 66 MRLVSALSD-SGFKPDCFVYNTIM 88
+L + S PD YNT++
Sbjct: 335 FKLKDEMEHLSIVSPDVVTYNTLV 358
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA--SLGIKPNLVTYTILIDNVCNTKNLREA 65
P + N ++ L + S T+ +D R+ +L + PN T+ +L+ C+ L +A
Sbjct: 171 PSLQAANAVLSALARSPS-TSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADA 229
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +S + G PD YNT++K +
Sbjct: 230 LSTLSTMQGFGLSPDVVTYNTLLKAH 255
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y ++ K D+M + + P++ TY LI +C L EA+
Sbjct: 489 PDEVSYGTVMAAYFKENKPEPALYLWDEM-SKRKLTPSIYTYNTLIKGLCTIGKLTEAID 547
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ L G PD YN I+ Y
Sbjct: 548 KLNELMKKGLVPDDTTYNIIIHAY 571
>gi|341605713|gb|AEK82959.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605715|gb|AEK82960.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605717|gb|AEK82961.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605719|gb|AEK82962.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605755|gb|AEK82980.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605757|gb|AEK82981.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605759|gb|AEK82982.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605827|gb|AEK83016.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605829|gb|AEK83017.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|341605695|gb|AEK82950.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ + + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCQFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCQFNGLAINSMFYSSLIDG 131
>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 369
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK Y+ V +M G+ P+++TY++L+ +C + A++
Sbjct: 197 PTIVTYNILINGLCKSERFGEAYDLVKEMLEK-GLTPSVITYSLLMKGLCLGHKIEMALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ +GFKPD ++NT++ G
Sbjct: 256 LWNQVTKNGFKPDVQMHNTLIHG 278
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + ++ G+ + Y+ +I+ +C L +A+ +
Sbjct: 93 DSITYGILVHGFCKNGYINKSLRVLETAERKGGVL-DAFAYSAMINGLCKETKLEKAISV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYN ++ G
Sbjct: 152 LNGMIKSGCKPNTHVYNALING 173
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +N L+ LC + M PNLVT L++ ++R A+
Sbjct: 267 PDVQMHNTLIHGLCSVGKTQLALSLYLDMN-YWNCAPNLVTQNTLMEGFYKDGDMRNALV 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + + +PD YN +KG
Sbjct: 326 IWARILKNELQPDIISYNITLKG 348
>gi|341605791|gb|AEK82998.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGXAINSXFYSSLIDG 131
>gi|341605747|gb|AEK82976.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605749|gb|AEK82977.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605751|gb|AEK82978.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GFAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +GF + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGFAINSMFYSSLIDG 131
>gi|341605697|gb|AEK82951.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCXFNGLAINSMFYSSLIDG 131
>gi|341605693|gb|AEK82949.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GXAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGXAINSXFYSSLIDG 131
>gi|260780314|gb|ACX50703.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780316|gb|ACX50704.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780320|gb|ACX50706.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780322|gb|ACX50707.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780326|gb|ACX50709.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780328|gb|ACX50710.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780334|gb|ACX50713.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780336|gb|ACX50714.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780350|gb|ACX50721.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780354|gb|ACX50723.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780356|gb|ACX50724.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780360|gb|ACX50726.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780362|gb|ACX50727.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780364|gb|ACX50728.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780366|gb|ACX50729.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780368|gb|ACX50730.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780370|gb|ACX50731.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780372|gb|ACX50732.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780374|gb|ACX50733.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780376|gb|ACX50734.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780378|gb|ACX50735.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780380|gb|ACX50736.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780382|gb|ACX50737.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780384|gb|ACX50738.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780386|gb|ACX50739.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780390|gb|ACX50741.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780392|gb|ACX50742.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKQGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI +YN L+K LC+ ++ + +M A GIKPN V+Y +LI +C T+ +R+A+ L
Sbjct: 517 DIVSYNGLIKALCRDGNVDRSIMLLSEM-AEKGIKPNNVSYNLLISELCKTRRVRDALEL 575
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + PD YNT++ G
Sbjct: 576 SKEMLNQELTPDIVTYNTLING 597
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 36/120 (30%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILI---------D 54
K PPD TY+ L+ LCK L + + +M G P++VTYTIL+ D
Sbjct: 337 KGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDK-GFAPSIVTYTILLHSFCRNGMWD 395
Query: 55 N--------------------------VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
N VC + + +AMR + + G+KPD YNTI+
Sbjct: 396 NIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTII 455
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L ++ YN ++ +CK R + F+ +M+ S G KP++ TY +I ++CN +
Sbjct: 407 KGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMK-SQGYKPDICTYNTIIYHLCNNNQME 465
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA L L G + YNT++
Sbjct: 466 EAEYLFENLLHEGVVANAITYNTLI 490
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L PDI TYN L+ LCK + N ++++ + +++TY ILI C +
Sbjct: 579 MLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE-DVHADIITYNILISWHCKAR 637
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L +A L++ SG P+ + +++ +
Sbjct: 638 LLHDASMLLNRAVTSGITPNERTWGIMVQNF 668
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ +YN L+ LCK R + +M + + P++VTY LI+ +C +
Sbjct: 547 KGIKPNNVSYNLLISELCKTRRVRDALELSKEM-LNQELTPDIVTYNTLINGLCKMGWMH 605
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L+ L + D YN ++
Sbjct: 606 AALNLLEKLHNEDVHADIITYNILI 630
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y ++ LC + +D+M +G ++ T+ ++ +C LREA R
Sbjct: 205 PDTVLYQTVIHALCAQGGVNEAATLLDEMFL-MGCSADVNTFNDIVHGLCTLGRLREAAR 263
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + G P+ Y ++KG
Sbjct: 264 LVDRMMIRGCVPNAITYGFLLKG 286
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 30/114 (26%)
Query: 8 PDIFTYNFLVKCLC------KCRSL--------TTVYNFV----------------DQMR 37
P+ TY FL+K LC + R++ ++N V +
Sbjct: 275 PNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETM 334
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S G P+ TY+ILI +C L AM+L+ + D GF P Y ++ +
Sbjct: 335 GSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSF 388
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + + + TYN L+ L + S + + M G ++V+Y LI +C
Sbjct: 474 LLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLH-GCSLDIVSYNGLIKALCRDG 532
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N+ ++ L+S +++ G KP+ YN ++
Sbjct: 533 NVDRSIMLLSEMAEKGIKPNNVSYNLLI 560
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP FT++ + LC+ + M A G P+ V Y +I +C + E
Sbjct: 167 RVPPTTFTFSIAARALCRLGRADEALTMLRSM-ARHGCVPDTVLYQTVIHALCAQGGVNE 225
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + G D +N I+ G
Sbjct: 226 AATLLDEMFLMGCSADVNTFNDIVHG 251
>gi|341605703|gb|AEK82954.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605705|gb|AEK82955.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605709|gb|AEK82957.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605813|gb|AEK83009.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605815|gb|AEK83010.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605817|gb|AEK83011.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605819|gb|AEK83012.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCXFNGLAINSMFYSSLIDG 131
>gi|341605699|gb|AEK82952.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ Q G N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGXAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCXFNGXAINSMFYSSLIDG 131
>gi|341605797|gb|AEK83001.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605799|gb|AEK83002.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605801|gb|AEK83003.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GXAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGXAINSXFYSSLIDG 131
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L KCR + +++MR G+K LVT+ I+I +C L A
Sbjct: 341 LLPDVVTYNTLADACFKCRCSSDALRLLEEMREK-GVKATLVTHNIVIKGLCKDGELEGA 399
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ ++D G PD YNT++ +
Sbjct: 400 LGCLNKMADDGLAPDVITYNTLIHAH 425
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ CK ++ Y +D+M G+K + T ++ N+C K EA
Sbjct: 411 LAPDVITYNTLIHAHCKAGNIAKAYTLMDEM-VRRGLKLDTFTLNTVLYNLCKEKRYEEA 469
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + GF PD Y T+M Y
Sbjct: 470 QGLLQSPPQRGFMPDEVSYGTVMAAY 495
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L P I TYN L+K L + L + ++++ G+ P+ TY I+I C
Sbjct: 511 MIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEK-GLVPDDTTYNIIIHAYCKEG 569
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A + + + ++ FKPD NT+M G
Sbjct: 570 DLENAFQFHNKMVENSFKPDVVTCNTLMNG 599
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L LC+ + + D+M + P++VTY L D + +A+R
Sbjct: 307 PDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALR 366
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G K +N ++KG
Sbjct: 367 LLEEMREKGVKATLVTHNIVIKG 389
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ C+ L + +M+ G+ P TY L+ +++A
Sbjct: 235 LSPDAVTYNTLLNAHCRKGMLGEARALLARMKKD-GVAPTRPTYNTLVSAYARLGWIKQA 293
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++V A++ +GF+PD + YN + G
Sbjct: 294 TKVVEAMTANGFEPDLWTYNVLAAG 318
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + + T+N ++K LCK L +++M A G+ P+++TY LI C N+
Sbjct: 374 KGVKATLVTHNIVIKGLCKDGELEGALGCLNKM-ADDGLAPDVITYNTLIHAHCKAGNIA 432
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ + G K D F NT++
Sbjct: 433 KAYTLMDEMVRRGLKLDTFTLNTVL 457
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P+ +T+N LV C +L + + M+ G+ P+ VTY L++ C L E
Sbjct: 199 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQG-FGLSPDAVTYNTLLNAHCRKGMLGE 257
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L++ + G P YNT++ Y
Sbjct: 258 ARALLARMKKDGVAPTRPTYNTLVSAY 284
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD+ T N L+ LC L + G K +++TY LI +C
Sbjct: 581 MVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESW-VEKGKKVDVITYNTLIQTMCKDG 639
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ A+ + + G +PD F YN ++
Sbjct: 640 DVDTALHFFADMEARGLQPDAFTYNVVL 667
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L++ +CK + T +F M A G++P+ TY +++ + EA +
Sbjct: 624 DVITYNTLIQTMCKDGDVDTALHFFADMEAR-GLQPDAFTYNVVLSALSEAGRTEEAQNM 682
Query: 69 VSALSDSG 76
+ L++SG
Sbjct: 683 LHKLAESG 690
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN LV + + V+ M A+ G +P+L TY +L +C + EA RL
Sbjct: 276 TYNTLVSAYARLGWIKQATKVVEAMTAN-GFEPDLWTYNVLAAGLCQAGKVDEAFRLKDE 334
Query: 72 LSDSG-FKPDCFVYNTI 87
+ G PD YNT+
Sbjct: 335 MERLGTLLPDVVTYNTL 351
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA--SLGIKPNLVTYTILIDNVCNTKNLREA 65
P + N ++ L + S T+ +D R+ +L + PN T+ +L+ C+ L +A
Sbjct: 165 PSLQAANAVLSALARSPS-TSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADA 223
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +S + G PD YNT++ +
Sbjct: 224 LSTLSTMQGFGLSPDAVTYNTLLNAH 249
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ P++ TY LI + L+EA+ ++ L + G PD YN I+ Y
Sbjct: 516 LTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAY 565
>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
Length = 567
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++FTY+FL++ K R +D++ A G KPNLV+Y +L+ +C
Sbjct: 196 KGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAK-GGKPNLVSYNVLLTGLCKEGRTE 254
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EAM+ L GF P+ YN +++
Sbjct: 255 EAMQFFRDLPSKGFSPNVVSYNILLR 280
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TYN LV+ LC +L+ +D+ G+ PN+ TY+ L++ + EA+
Sbjct: 164 PTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKK-GLVPNVFTYSFLLEAAYKERGADEAI 222
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL+ + G KP+ YN ++ G
Sbjct: 223 RLLDEIVAKGGKPNLVSYNVLLTG 246
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD L+ LCK + ++ M S G P+ + T L++N+C
Sbjct: 88 MIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGS-GTTPDPASCTFLVNNLCKRG 146
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ AM+LV + + G+ + YN++++G
Sbjct: 147 NVGYAMQLVEKMEEYGYPTNTVTYNSLVRG 176
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I PD + FLV LCK ++ V++M G N VTY L+ +C
Sbjct: 123 MIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKME-EYGYPTNTVTYNSLVRGLCMHG 181
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL ++++++ G P+ F Y+ +++
Sbjct: 182 NLSQSLQILDKFMKKGLVPNVFTYSFLLEA 211
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ +YN L+ LCK F + S G PN+V+Y IL+ ++C
Sbjct: 228 IVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDL-PSKGFSPNVVSYNILLRSLCYEG 286
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A L++ + P +N ++
Sbjct: 287 RWEKAKELLAEMDGGERSPSIVTFNILI 314
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +N L+ LCKCR T + V +M G PN TYTI+++ + + +E M
Sbjct: 479 PDVDNFNALILGLCKCRK-TDLSLMVFEMMVKKGYMPNETTYTIIVEGIAH----QEEME 533
Query: 68 LVSAL 72
L +A+
Sbjct: 534 LAAAV 538
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++ LC+ + + + +M G P+ TY+ LI +C+ L EAM + S +
Sbjct: 414 YKGVISSLCRKGNTYPAFQLLYEM-TKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIM 472
Query: 73 SDSGFKPDCFVYNTIMKG 90
++ +PD +N ++ G
Sbjct: 473 EENYCRPDVDNFNALILG 490
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + L PD YN + CLC+ + +F+ +MR + G++P+ TY +I C
Sbjct: 565 LMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNT-GLEPDQATYNTMISAQCREG 623
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N +A++L++ + S KP+ Y T++ G
Sbjct: 624 NTSKALKLLNEMKWSSIKPNLITYTTLVVG 653
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + + +++M+ S IKPNL+TYT L+ + + +A
Sbjct: 605 LEPDQATYNTMISAQCREGNTSKALKLLNEMKWS-SIKPNLITYTTLVVGLLEAGVVEKA 663
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ ++ +GF P Y +++
Sbjct: 664 KYLLNEMASAGFTPTPLTYRRVLQA 688
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + LV LC+ + Y +M +G+ PN VTY ID++ + + E++
Sbjct: 292 PDVVTLSALVDGLCRDGRFSEAYALFREMD-KIGVAPNHVTYCTFIDSLAKVQRVNESLG 350
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G D +Y T+M
Sbjct: 351 LLGEMVSRGVAMDLVMYTTVM 371
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+I T+N L+ L + + +M+ +G++PN +TY IL+
Sbjct: 775 MLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMK-KMGLEPNNLTYDILVTGYAKKS 833
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N EA+RL + GF P YN+++ +
Sbjct: 834 NKVEALRLYCEMVSKGFIPKASTYNSLISDF 864
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D+ YN LV + ++M+A G++P++VT+T LI C K + EA
Sbjct: 220 LSLDVVGYNTLVAGFFYSGDADAAWEVAERMKAD-GVEPSVVTHTTLIGEYCKMKRIEEA 278
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD + ++ G
Sbjct: 279 FTLYEGMVRSGVLPDVVTLSALVDG 303
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L DI YN LV LC C +T V GI P+ +T+ LI C + +L A
Sbjct: 710 LHADITVYNTLVHVLC-CHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNA 768
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ +NT++ G
Sbjct: 769 FATYAQMLHQGLSPNIATFNTLLGG 793
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD T+N L+ CK L + QM G+ PN+ T+ L+ + +
Sbjct: 740 MLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQ-GLSPNIATFNTLLGGLESAG 798
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G +P+ Y+ ++ GY
Sbjct: 799 RIGEADTVICEMKKMGLEPNNLTYDILVTGY 829
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TY LV C+ ++ + QM + PN+VT++ +++ + + +A
Sbjct: 395 ITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEK-SVSPNVVTFSSILNGLVKRGCIAKA 453
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + DSG P+ Y T++ G+
Sbjct: 454 AGYMRKMKDSGIAPNVVTYGTLIDGF 479
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 34 DQMRASLG--IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
D +R +L I PN VTYT+L+D C N+ A +++ + + P+ +++I+ G
Sbjct: 385 DVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNG 443
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ T++ ++ L K + ++ +M+ S GI PN+VTY LID +
Sbjct: 428 KSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDS-GIAPNVVTYGTLIDGFFKCQGQE 486
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + G + + F+ ++++ G
Sbjct: 487 AALDVYRDMLHEGVEANNFIVDSLVNG 513
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ LCK + + ++F ++ GI+PN+VTYT L++ +CN+ +A R
Sbjct: 291 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK-GIRPNVVTYTALVNGLCNSSRWSDAAR 349
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + P+ Y+ ++ +
Sbjct: 350 LLSDMIKKKITPNVITYSALLDAF 373
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + YN ++ LCK + + N +M GI+PN+VTY+ LI +CN +
Sbjct: 865 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSD 923
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + PD F ++ ++ +
Sbjct: 924 ASRLLSDMIERKINPDVFTFSALIDAF 950
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PP+I TYN L+ LCK L + ++ S ++P + TY I+I+ +
Sbjct: 1067 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGM 1125
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L LS G KPD YNT++ G+
Sbjct: 1126 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 1160
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P + +TY+ L+ C C+ L + +M LG +PN+VT + L++ C++K + EA
Sbjct: 726 IPHNHYTYSILINCFCRRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEA 784
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + +G++P+ +NT++ G
Sbjct: 785 VALVDQMFVTGYQPNTVTFNTLIHG 809
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + PDI+TYN L+ LC L + M+ + ++VTYT +I +C T +
Sbjct: 496 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVTYTTVIRGMCKTGKV 554
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L +LS G KPD Y T+M G
Sbjct: 555 EEAWSLFCSLSLKGLKPDIVTYTTMMSG 582
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ PD+FT++ L+ K L D+M I P++VTY+ LI+ C
Sbjct: 931 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-VKRSIDPSIVTYSSLINGFCMHD 989
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA ++ + PD YNT++KG+
Sbjct: 990 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 1020
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++T+N ++ C C C ++ + + +M LG +P+ VT L++ C + +A+ L
Sbjct: 222 DLYTFNIVINCFCCCFQVSLALSILGKM-LKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 280
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V + + G+KPD YN I+
Sbjct: 281 VDKMVEIGYKPDIVAYNAII 300
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T LV C+ ++ + VD+M +G KP++V Y +ID++C TK + +A
Sbjct: 255 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIGYKPDIVAYNAIIDSLCKTKRVNDAF 313
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ G +P+ Y ++ G
Sbjct: 314 DFFKEIERKGIRPNVVTYTALVNG 337
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY +V LCK +N +++M ++P ++ Y +ID +C K
Sbjct: 826 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYK 884
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +A+ L + G +P+ Y++++
Sbjct: 885 HMDDALNLFKEMETKGIRPNVVTYSSLI 912
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI TY+ L+ LC + D M S G ++V+Y LI+ C K
Sbjct: 389 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM-VSKGCLADVVSYNTLINGFCKAK 447
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L +S G + YNT+++G+
Sbjct: 448 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 478
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P I+TYN +++ +CK + ++ + G+KP++V Y +I C + E
Sbjct: 1110 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEE 1168
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 1169 ADALFKEMKEDGTLPNSGCYNTLIRA 1194
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ L + +M S G+ PN++TY L+D +C L
Sbjct: 1039 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-VSDGVPPNIMTYNTLLDGLCKNGKLE 1097
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM + L S +P + YN +++G
Sbjct: 1098 KAMVVFEYLQRSKMEPTIYTYNIMIEG 1124
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ L + +D+M A G +P+LVTY ++++ +C + A
Sbjct: 798 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFN 856
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + +P +YNTI+ G
Sbjct: 857 LLNKMEQGKLEPGVLIYNTIIDG 879
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P++ TY+ L+ K + ++M + I P++VTY+ LI+ +C
Sbjct: 354 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSLINGLCLHD 412
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G D YNT++ G+
Sbjct: 413 RIDEANQMFDLMVSKGCLADVVSYNTLINGF 443
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+I T + L+ C + ++ VDQM + G +PN VT+ LI + EAM
Sbjct: 762 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT-GYQPNTVTFNTLIHGLFLHNKASEAM 820
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD Y ++ G
Sbjct: 821 ALIDRMVAKGCQPDLVTYGVVVNG 844
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K D+ +YN L+ CK + + +M + G+ N VTY LI
Sbjct: 424 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM-SQRGLVSNTVTYNTLIQGFFQAG 482
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +A S + G PD + YN ++ G
Sbjct: 483 DVDKAQEFFSQMDFFGISPDIWTYNILLGG 512
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + +QM+ +LGI N TY+ILI+ C L A+
Sbjct: 693 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILINCFCRRSQLPLALA 751
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++P+ ++++ GY
Sbjct: 752 VLGKMMKLGYEPNIVTLSSLLNGY 775
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY+ L+ CLC + + M I P++ T++ LID L
Sbjct: 899 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLV 957
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + P Y++++ G+
Sbjct: 958 EAEKLYDEMVKRSIDPSIVTYSSLINGF 985
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY LV LC + + M I PN++TY+ L+D +
Sbjct: 322 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPNVITYSALLDAFVKNGKVL 380
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + PD Y++++ G
Sbjct: 381 EAKELFEEMVRMSIDPDIVTYSSLING 407
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ DI TY +++ +CK + ++ + G+KP++VTYT ++ +C L
Sbjct: 532 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLH 590
Query: 64 EAMRLVSALSDSGF-KPDC 81
E L + + G K DC
Sbjct: 591 EVEALYTKMKQEGLMKNDC 609
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN +K LCKC + F+ A + + P++V+YT +I+ +C + +L A R
Sbjct: 180 PDVVTYNSFIKGLCKCDRVDEARKFL----ARMPVTPDVVSYTTVINGLCKSGDLDSASR 235
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +S+ G PD Y++++ G+
Sbjct: 236 MLDHMSNRGCTPDVVTYSSLIDGF 259
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY +V LCK +D+MR G PN+ TY ++++ +C + L EA +
Sbjct: 110 PTVVTYTNIVDGLCKAERTRDAVKLLDEMRDK-GCSPNIYTYNVIVEGLCEERKLDEAKK 168
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G+ PD YN+ +KG
Sbjct: 169 MLEEMAVRGYFPDVVTYNSFIKG 191
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ K + + F+ +M + + P +VTYT ++D +C + R+A++
Sbjct: 75 PDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCL-PTVVTYTNIVDGLCKAERTRDAVK 133
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D G P+ + YN I++G
Sbjct: 134 LLDEMRDKGCSPNIYTYNVIVEG 156
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y ++ LCK L + +D M ++ G P++VTY+ LID C + AM
Sbjct: 212 PDVVSYTTVINGLCKSGDLDSASRMLDHM-SNRGCTPDVVTYSSLIDGFCKGGEVERAMG 270
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ G +P+ YN+++
Sbjct: 271 LLDSMLKLGCRPNMVAYNSLL 291
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ CK + +D M LG +PN+V Y L+ + ++ +A
Sbjct: 247 PDVVTYSSLIDGFCKGGEVERAMGLLDSM-LKLGCRPNMVAYNSLLGALHRLGHIGKAED 305
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + GF PD YN + G
Sbjct: 306 MLVEMERRGFTPDVVSYNACIDG 328
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F YN ++ CK R + QM N+VT+ IL+ +C L +A
Sbjct: 398 PDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC--NVVTWNILVHGLCVDDRLSDAET 455
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + D GF PD Y T++
Sbjct: 456 MLLTMVDEGFIPDFVTYGTLV 476
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN----------LVTYTILIDNVC 57
PD+ +YN + LCK + D+M G PN ++ YT+L+D +C
Sbjct: 317 PDVVSYNACIDGLCKAERVKKAKAVFDRM-VERGCTPNASSYSMLIVDILLYTVLLDGLC 375
Query: 58 NTKNLREAMRLVSALSDSGF-KPDCFVYNTIMKGY 91
EA L S + D +PD F YN ++ +
Sbjct: 376 KGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSH 410
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++FTYN L+ L + +M +P+ T+ IL+ +C + L +A +L
Sbjct: 6 NVFTYNKLLLQLTREHRHDKASAVFQEM-IDKSCQPDAFTFAILLRGLCRSNQLEKARKL 64
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + + G PD +YN ++ GY
Sbjct: 65 LGRMKEMGCVPDDAIYNALISGY 87
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD TY LV +CKC +S + F + ++ G P++VTY+ LI + + EA
Sbjct: 467 PDFVTYGTLVDAMCKCGKSAAALELFEEAVKG--GCVPDVVTYSALITGLVHENMAEEAY 524
Query: 67 RLVSALSDSGFKPD 80
L + L + + PD
Sbjct: 525 LLFTKLVERRWVPD 538
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 9 DIFTYNFLVKCLCKCRSL----TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ T+N LV LC L T + VD+ G P+ VTY L+D +C
Sbjct: 433 NVVTWNILVHGLCVDDRLSDAETMLLTMVDE-----GFIPDFVTYGTLVDAMCKCGKSAA 487
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L G PD Y+ ++ G
Sbjct: 488 ALELFEEAVKGGCVPDVVTYSALITG 513
>gi|296087920|emb|CBI35203.3| unnamed protein product [Vitis vinifera]
Length = 394
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PDIFTYN L+ LC V +++M S I PN+V+ I++D +C
Sbjct: 174 MIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKS-KIMPNVVSLNIVVDALCKEG 232
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +PD Y +M G+
Sbjct: 233 KVTEAHDVVDMMIQGGVEPDVVTYAALMDGH 263
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 19 CLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA------- 71
C+C S T+ N + + G PNLVTY+IL+D +C L EAM L+ A
Sbjct: 284 CVCNVVSYNTLINALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGTARD 343
Query: 72 ----LSDSGFKPDCFVYNTIMKG 90
L+ G +PD + +N +++G
Sbjct: 344 LFSNLAPRGLQPDVWTHNIMIRG 366
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ + N +V LCK +T ++ VD M G++P++VTY L+D C
Sbjct: 209 MVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQG-GVEPDVVTYAALMDGHCLRS 267
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+++ + +G + YNT++
Sbjct: 268 EMDEAVKVFDMMVRNGCVCNVVSYNTLINA 297
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T ++ C + + + ++ LG +P+ T+T L+ +C + EA
Sbjct: 96 IPPDVYTLTIVINSFCHLNRVDFALSVLAKI-LKLGHQPDTATFTTLVRGLCVVGKIGEA 154
Query: 66 MRLVSALSDSGFK-------------PDCFVYNTIMKG 90
+ + + GF+ PD F YN+++
Sbjct: 155 LDVFDKMVGEGFQPNPNLIMIAKGISPDIFTYNSLIHA 192
>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P + TYN LV C+ + + + +M GI+P +V YT LI +C+
Sbjct: 177 MVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEM-VKKGIEPTVVIYTTLIHGLCSES 235
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + DSG P+ + YN +M GY
Sbjct: 236 KLMEAESMFRQMKDSGVFPNLYTYNVLMDGY 266
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P + Y L+ LC L + QM+ S G+ PNL TY +L+D C T
Sbjct: 212 MVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDS-GVFPNLYTYNVLMDGYCKTA 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N+++A+ L + D G +P+ + ++
Sbjct: 271 NVKQALHLYQGMLDDGLQPNVVTFGILI 298
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F+Q+ P+++TYN L+ CK ++ + M G++PN+VT+ ILID +
Sbjct: 243 MFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDD-GLQPNVVTFGILIDAL 301
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + L A R ++ G P+ V+N+++ GY
Sbjct: 302 CKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGY 336
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T+ L+ LCK R L F QM A G+ PN+V + LID N EA
Sbjct: 287 LQPNVVTFGILIDALCKVRELLAARRFFVQM-AKFGVVPNVVVFNSLIDGYSKAGNCSEA 345
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
L+ + PD F Y+ ++K
Sbjct: 346 TDLLLEMEKFKISPDVFTYSILIK 369
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+FTY+ L+K C+ ++ + + +M G+ N V Y LID C N+ +
Sbjct: 356 KISPDVFTYSILIKNACRLGTVEEADDILKRMEKE-GVPANSVVYNSLIDGYCKEGNMEK 414
Query: 65 AMRLVSA------LSDSGFKPDCFVYNTIMKGY 91
A+ + A + +G +PD Y +++G+
Sbjct: 415 ALEIFKATKFFSDMRRNGLRPDALAYAVMLQGH 447
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN------FVDQMRASLGIKPNLVTYTILIDNVC 57
+ +P + YN L+ CK ++ F MR + G++P+ + Y +++
Sbjct: 390 EGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRN-GLRPDALAYAVMLQGHL 448
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N K++ + M L + + G P+ + +GY
Sbjct: 449 NAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGY 482
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD TY L+ CK + ++ +QM G+ PN+VTYT L D +C
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQM-VQKGLTPNVVTYTALADGLCKNG 466
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L+ +S G +P+ + YNTI+ G
Sbjct: 467 EIDVANELLHEMSRKGLQPNVYTYNTIVNG 496
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P++ TY L LCK + + +M + G++PN+ TY +++ +C
Sbjct: 443 MVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEM-SRKGLQPNVYTYNTIVNGLCKIG 501
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ + ++L+ + +GF PD Y T+M Y
Sbjct: 502 NIEQTVKLMEEMDLAGFYPDTITYTTLMDAY 532
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+++TYN +V LCK ++ +++M + G P+ +TYT L+D C +
Sbjct: 481 KGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLA-GFYPDTITYTTLMDAYCKMGEMA 539
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ + + +P +N +M G+
Sbjct: 540 KAHELLRIMLNKRLQPTLVTFNVLMNGF 567
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PDI TY ++ +CK + ++M G++P+ VTYT LID C ++
Sbjct: 376 KKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVK-GLEPDEVTYTALIDGYCKAGEMK 434
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + + G P+ Y + G
Sbjct: 435 EAFSVHNQMVQKGLTPNVVTYTALADG 461
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+L P + T+N L+ C L ++ M GI PN T+ L+ C
Sbjct: 548 MLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEK-GIMPNATTFNSLMKQYCIKN 606
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+R + A+ D G PD YN ++KG+
Sbjct: 607 NMRATTEIYKAMHDRGVMPDSNTYNILIKGH 637
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y ++ CK +++ D+MR I P++VTYT +I +C + + EA
Sbjct: 345 PDNVVYTTVISGFCKLGNVSAACKLFDEMRRK-KIVPDIVTYTSVIHGICKSGKMVEARE 403
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G +PD Y ++ GY
Sbjct: 404 MFNEMLVKGLEPDEVTYTALIDGY 427
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD + YN ++ LCK + + MR G+ P+ V YT +I C N+
Sbjct: 306 KGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMR-KWGVFPDNVVYTTVISGFCKLGNVS 364
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +L + PD Y +++ G
Sbjct: 365 AACKLFDEMRRKKIVPDIVTYTSVIHG 391
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ K + P+ T+N L+K C R+ T +Y + G+ P+ TY ILI C
Sbjct: 583 MLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR----GVMPDSNTYNILIKGHC 638
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+N++EA L + + G+ Y+ +++G+
Sbjct: 639 KARNMKEAWFLHKEMVEKGYSVTAATYDALIRGF 672
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 2 IFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F++ P + + N ++ CLC+ + +N + QM G P++V+Y +++
Sbjct: 229 VFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQM-TDRGNFPDVVSYGVVVSGY 287
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C L + ++LV L G KPD ++YN I+
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNII 319
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y +V C+ L V VD+++ G+KP+ Y +I +C + EA +
Sbjct: 275 PDVVSYGVVVSGYCRIGELDKVLKLVDELKGK-GLKPDEYIYNNIILLLCKNGEVVEAEQ 333
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G PD VY T++ G+
Sbjct: 334 LLRGMRKWGVFPDNVVYTTVISGF 357
>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1010
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK L F +M+ + G+KPN+V+Y+ L+D C +++A++
Sbjct: 163 PDVITYNALINCFCKFGKLPKGLEFFREMKRN-GLKPNVVSYSTLVDAFCKEGMMQQAIK 221
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G P+ + Y +++ Y
Sbjct: 222 FYVDMRRVGLVPNEYTYTSLIDAY 245
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ +Y+ LV CK + F MR +G+ PN TYT LID C NL +A
Sbjct: 196 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR-RVGLVPNEYTYTSLIDAYCKIGNLSDA 254
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + G + + Y ++ G
Sbjct: 255 FRLANEMLQVGVEWNVVTYTALIDG 279
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +FTYN ++ C+CK + ++M+ G+ P+ VTY +ID L + +
Sbjct: 93 PTVFTYNIMIDCMCKEGDVEAARGLFEEMKFR-GLIPDTVTYNSMIDGFGKVGRLDDTVC 151
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ D +PD YN ++ +
Sbjct: 152 FFEEMKDMCCEPDVITYNALINCF 175
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ +TY L+ CK +L+ + ++M +G++ N+VTYT LID +C +N E
Sbjct: 231 LVPNEYTYTSLIDAYCKIGNLSDAFRLANEM-LQVGVEWNVVTYTALIDGLCGWENPTEG 289
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + + K + ++ G
Sbjct: 290 LHLLDEMVELDIKVTVVTFCVLIDG 314
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ L PD TYN ++ K L F ++M+ + +P+++TY LI+ C L
Sbjct: 123 FRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK-DMCCEPDVITYNALINCFCKFGKL 181
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + +G KP+ Y+T++ +
Sbjct: 182 PKGLEFFREMKRNGLKPNVVSYSTLVDAF 210
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ T+ L+ LCK + ++ ++ ++ G++ N YT +ID +C + A L
Sbjct: 305 VVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLF 364
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
++ G PD Y ++M G
Sbjct: 365 EQMAQKGLVPDRTAYTSLMDG 385
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TY L+ LC + T + +D+M L IK +VT+ +LID +C K + +A+
Sbjct: 269 NVVTYTALIDGLCGWENPTEGLHLLDEM-VELDIKVTVVTFCVLIDGLCKNKLVSKAIDY 327
Query: 69 VSALS-DSGFKPDCFVYNTIMKG 90
+S D G + + +Y ++ G
Sbjct: 328 FGRISNDFGLQANAAIYTAMIDG 350
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+ K V F M + G KP + TY I+ID +C ++ A
Sbjct: 58 PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGA-GAKPTVFTYNIMIDCMCKEGDVEAARG 116
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YN+++ G+
Sbjct: 117 LFEEMKFRGLIPDTVTYNSMIDGF 140
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++ LCK + +QM A G+ P+ YT L+D N+ EA+ L +
Sbjct: 344 YTAMIDGLCKGNQVEAATTLFEQM-AQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 402
Query: 73 SDSGFKPDCFVYNTIMKG 90
++G K D Y +++ G
Sbjct: 403 VETGMKLDLLAYTSLVWG 420
>gi|260780352|gb|ACX50722.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GFAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +GF + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGFAINSMFYSSLIDG 131
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LC+ ++ DQ+ S G+ P+LVT+ IL++ C R+A
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQL-TSKGL-PDLVTFHILMEGYCRKGESRKAAM 491
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S G KP YN +MKGY
Sbjct: 492 LLKEMSKMGLKPRHLTYNIVMKGY 515
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ +YN L+ LC ++ + D+M S G++PNL+TY LI+ C
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM-VSAGVQPNLITYNALINGFCKND 380
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+EA+ + ++ G P +YN ++ Y
Sbjct: 381 MLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC--- 57
+I +++ P++FT+N ++ LCK + + ++ M+ G PN+V+Y LID C
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKV-YGCSPNVVSYNTLIDGYCKLG 272
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A ++ + ++ P+ +N ++ G+
Sbjct: 273 GNGKMYKADAVLKEMVENDVSPNLTTFNILIDGF 306
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN ++K CK +L N QM ++ N+ +Y +L+ L +A
Sbjct: 501 LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDA 560
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
L++ + + G P+ Y +
Sbjct: 561 NMLLNEMLEKGLVPNRITYEIV 582
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ TYN L+ CK L + ++ G P Y +LID C
Sbjct: 357 MVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQ-GAVPTTRMYNMLIDAYCKLG 415
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + L + G PD YN ++ G
Sbjct: 416 KIDDGFALKEEMEREGIVPDVGTYNCLIAG 445
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 IFKQLP----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+F QL PD+ T++ L++ C+ + +M + +G+KP +TY I++ C
Sbjct: 458 LFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEM-SKMGLKPRHLTYNIVMKGYC 516
Query: 58 NTKNLREAMRLVSALS-DSGFKPDCFVYNTIMKGY 91
NL+ A + + + + + + YN +++GY
Sbjct: 517 KEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGY 551
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 15 FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74
++ L + RS Y + + +R I+PN+ T+ ++I+ +C T + +A ++ +
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRK--IQPNVFTFNVVINALCKTGKMNKARDVMEDMKV 251
Query: 75 SGFKPDCFVYNTIMKGY 91
G P+ YNT++ GY
Sbjct: 252 YGCSPNVVSYNTLIDGY 268
>gi|260765969|gb|ACX50015.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765971|gb|ACX50016.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765973|gb|ACX50017.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765975|gb|ACX50018.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765977|gb|ACX50019.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765979|gb|ACX50020.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765981|gb|ACX50021.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765983|gb|ACX50022.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765985|gb|ACX50023.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765987|gb|ACX50024.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765989|gb|ACX50025.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765991|gb|ACX50026.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765993|gb|ACX50027.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765995|gb|ACX50028.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765997|gb|ACX50029.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765999|gb|ACX50030.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766001|gb|ACX50031.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766003|gb|ACX50032.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766005|gb|ACX50033.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766007|gb|ACX50034.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766009|gb|ACX50035.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766011|gb|ACX50036.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766013|gb|ACX50037.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766015|gb|ACX50038.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766017|gb|ACX50039.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766019|gb|ACX50040.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766021|gb|ACX50041.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766023|gb|ACX50042.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766025|gb|ACX50043.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766027|gb|ACX50044.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766029|gb|ACX50045.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766031|gb|ACX50046.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766033|gb|ACX50047.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766035|gb|ACX50048.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766037|gb|ACX50049.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766039|gb|ACX50050.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766041|gb|ACX50051.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766043|gb|ACX50052.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766047|gb|ACX50054.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766049|gb|ACX50055.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780310|gb|ACX50701.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780312|gb|ACX50702.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780318|gb|ACX50705.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780330|gb|ACX50711.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780332|gb|ACX50712.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780338|gb|ACX50715.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780340|gb|ACX50716.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780344|gb|ACX50718.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780346|gb|ACX50719.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780348|gb|ACX50720.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780394|gb|ACX50743.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780396|gb|ACX50744.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780398|gb|ACX50745.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780400|gb|ACX50746.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780402|gb|ACX50747.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780404|gb|ACX50748.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780406|gb|ACX50749.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780408|gb|ACX50750.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780410|gb|ACX50751.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780412|gb|ACX50752.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780414|gb|ACX50753.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780416|gb|ACX50754.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780418|gb|ACX50755.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780420|gb|ACX50756.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780422|gb|ACX50757.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780424|gb|ACX50758.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI K L P+ +TY+FL++ K R +D++ A G KPNLV+Y +L+ +C
Sbjct: 193 LIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAK-GGKPNLVSYNVLLTGLCKEG 251
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+AM+L L GF P+ YN +++
Sbjct: 252 RTEDAMQLFRELPSKGFSPNVVSYNILLR 280
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+F L+ LCK + ++ M S GI P+ +YT L+ ++C
Sbjct: 88 MVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGS-GIIPDAASYTFLVSSLCRKG 146
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ AM+LV + + G+ + YN++++G
Sbjct: 147 NVGYAMQLVDKMEEYGYPTNTATYNSLVRG 176
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TYN LV+ LC +LT +D++ G+ PN TY+ L++ + EA
Sbjct: 164 PTNTATYNSLVRGLCMHGNLTQSLQLLDRL-IQKGLVPNAYTYSFLLEAAYKERGADEAS 222
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + G KP+ YN ++ G
Sbjct: 223 KLLDEIIAKGGKPNLVSYNVLLTG 246
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ +YN L+ LCK ++ S G PN+V+Y IL+ ++CN
Sbjct: 228 IIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFREL-PSKGFSPNVVSYNILLRSLCNEG 286
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
EA L++ + P YN ++
Sbjct: 287 RWEEANVLLAEMDGDERSPSTVTYNILI 314
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT---YTILIDNVC 57
++++ P+ TYN + LC+ + ++ + SLG K + T Y I+I ++C
Sbjct: 368 MMYRHCNPNEGTYN-AIATLCEEGMVQEAFSIIQ----SLGNKQHFSTQEFYKIVITSLC 422
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A +L+ ++ GF PD F Y+++++G
Sbjct: 423 RKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRG 455
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F++LP P++ +YN L++ LC + +M P+ VTY ILI ++
Sbjct: 259 LFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGD-ERSPSTVTYNILIGSL 317
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
A+ ++ + + FKP YN I+
Sbjct: 318 TLHGRTEHALEVLEEMIRARFKPTASSYNPII 349
>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI K L P+ +TY+FL++ K R +D++ A G KPNLV+Y +L+ +C
Sbjct: 193 LIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAK-GGKPNLVSYNVLLTGLCKEG 251
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+AM+L L GF P+ YN +++
Sbjct: 252 RTEDAMQLFRELPSKGFSPNVVSYNILLR 280
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+F L+ LCK + ++ M S GI P+ +YT L+ ++C
Sbjct: 88 MVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGS-GIIPDAASYTFLVSSLCRKG 146
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ AM+LV + + G+ + YN++++G
Sbjct: 147 NVGYAMQLVDKMEEYGYPTNTATYNSLVRG 176
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TYN LV+ LC +LT +D++ G+ PN TY+ L++ + EA
Sbjct: 164 PTNTATYNSLVRGLCMHGNLTQSLQLLDRL-IQKGLVPNAYTYSFLLEAAYKERGADEAS 222
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + G KP+ YN ++ G
Sbjct: 223 KLLDEIIAKGGKPNLVSYNVLLTG 246
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ +YN L+ LCK ++ S G PN+V+Y IL+ ++CN
Sbjct: 228 IIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFREL-PSKGFSPNVVSYNILLRSLCNEG 286
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
EA L++ + P YN ++
Sbjct: 287 RWEEANVLLAEMDGDERSPSTVTYNILI 314
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT---YTILIDNVC 57
++++ P+ TYN + LC+ + ++ + SLG K + T Y I+I ++C
Sbjct: 368 MMYRHCNPNEGTYN-AIATLCEEGMVQEAFSIIQ----SLGNKQHFSTQEFYKIVITSLC 422
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A +L+ ++ GF PD F Y+++++G
Sbjct: 423 RKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRG 455
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F++LP P++ +YN L++ LC + +M P+ VTY ILI ++
Sbjct: 259 LFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGD-ERSPSTVTYNILIGSL 317
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
A+ ++ + + FKP YN I+
Sbjct: 318 TLHGRTEHALEVLEEMIRARFKPTASSYNPII 349
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +N ++ CK + D M +G+KP+++TY+ LID C + EA +L
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++++ G KPDC YNT++ GY
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGY 559
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ L+ C + + M S+G+KP+ VTY LI+ C + +A+
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASM-VSVGMKPDCVTYNTLINGYCKISRMEDALV 570
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD YN I++G
Sbjct: 571 LFREMESSGVSPDIITYNIILQG 593
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K L Y +M GI PN+VTY+ +I +C + + +AM
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILPNVVTYSSIIAALCKAQAMDKAM 254
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++++ +G P+C YN+I+ GY
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN +V C F+ +M + G++P++VTY L+D +C EA +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGY 349
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ ++ LCK +++ + M + G+ PN TY ++ C++ +EA+
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSGQPKEAIG 290
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +PD YN++M
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLM 311
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAA 603
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 604 KELYVGITESGTQLELSTYNIILHG 628
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + L+K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 117 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDEN 176
Query: 61 NLREAMRLVSALSDSG--FKPDCFVYNTIMKGY 91
+EA+ L+ + D G PD Y T++ G+
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK T D M G+KP + TY L+ L E
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHG 360
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 361 LLDLMVRNGIHPNHYVFSILICAY 384
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI PN ++ILI +
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVD 391
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G PD Y T++
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L P YN L+ LC + +M GI + + + +ID+ C
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM-LDRGICLDTIFFNSIIDSHCKEG 493
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KPD Y+T++ GY
Sbjct: 494 RVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ + ++ L+ K + +MR G+ P+ VTY +I +C + + +AMR
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMR 430
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ D P VYN+++
Sbjct: 431 YFEQMIDERLSPGNIVYNSLI 451
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ LCK + + +QM + P + Y LI ++C +A
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVYNSLIHSLCIFDKWDKA 463
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G D +N+I+ +
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSH 489
>gi|297849542|ref|XP_002892652.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338494|gb|EFH68911.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 403
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN +++CLCK + +D + S ++PN VTY++LI C+ +NL EAM L
Sbjct: 252 VATYNIMIQCLCKRKKSAEAKALIDGV-MSCRMRPNSVTYSLLIHGFCSEENLDEAMNLF 310
Query: 70 SALSDSGFKPDCFVYNTIMK 89
+ SG+KPD Y T+++
Sbjct: 311 EVMVYSGYKPDSECYFTLIR 330
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC+ S + Y+ V +M +KP ++ ++ID + +
Sbjct: 178 IEPDLETYNRMIRVLCESGSTSLSYSIVAEMERKW-VKPTASSFGLMIDGFYKEEKFDDV 236
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+++ + + G YN +++
Sbjct: 237 RKVMRMMDEFGVHVGVATYNIMIQ 260
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN +K LCKC + F+ A + + P++V+YT +I+ +C + +L A R
Sbjct: 148 PDVVTYNSFIKGLCKCDRVDEARKFL----ARMPVTPDVVSYTTVINGLCKSGDLDSASR 203
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +++ G PD Y++++ G+
Sbjct: 204 MLDQMTNRGCTPDVVTYSSLIDGF 227
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY +V LCK +D+MR G PN+ TY ++++ +C + L EA +
Sbjct: 78 PTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDK-GCSPNIYTYNVIVEGLCEERKLDEAKK 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G+ PD YN+ +KG
Sbjct: 137 MLEEMAVRGYFPDVVTYNSFIKG 159
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y ++ LCK L + +DQM + G P++VTY+ LID C + AM
Sbjct: 180 PDVVSYTTVINGLCKSGDLDSASRMLDQM-TNRGCTPDVVTYSSLIDGFCKGGEVERAMG 238
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ G +P+ YN+++
Sbjct: 239 LLDSMLKLGCRPNMVAYNSLL 259
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y+ LV+ LCK + L V+Q R I +++ YT+L+D +C EA
Sbjct: 320 PNASSYSMLVEELCKKKELDDAITLVEQAREKYQIV-DILLYTVLLDGLCKGGRFDEACA 378
Query: 68 LVSALSDSGF-KPDCFVYNTIMKGY 91
L S + D +PD F YN ++ +
Sbjct: 379 LFSKVLDEKICEPDVFFYNVMLDSH 403
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK----------------- 43
+I K PD FT+ L++ LC+ L + +M+ +
Sbjct: 1 MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60
Query: 44 -----------------PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
P +VTYT ++D +C ++A++L+ + D G P+ + YN
Sbjct: 61 FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120
Query: 87 IMKG 90
I++G
Sbjct: 121 IVEG 124
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ CK + +D M LG +PN+V Y L+ + ++ +A
Sbjct: 215 PDVVTYSSLIDGFCKGGEVERAMGLLDSM-LKLGCRPNMVAYNSLLGALHRLGHIGKAED 273
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + GF PD YN + G
Sbjct: 274 MLVEMERRGFTPDVVSYNACIDG 296
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F YN ++ CK R + QM N+VT+ IL+ +C L +A
Sbjct: 391 PDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC--NVVTWNILVHGLCVDDRLSDAET 448
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + D GF PD Y T++
Sbjct: 449 MLLTMVDEGFIPDFVTYGTLV 469
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN + LCK + D+M G PN +Y++L++ +C K L +A+
Sbjct: 285 PDVVSYNACIDGLCKAERVKKAKAVFDRM-VERGCTPNASSYSMLVEELCKKKELDDAIT 343
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + D +Y ++ G
Sbjct: 344 LVEQAREKYQIVDILLYTVLLDG 366
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+P+ T+ IL+ +C + L +A +L+ + + G PD +YN ++ GY
Sbjct: 7 QPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGY 55
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD TY LV +CKC +S + F + ++ G P++VTY+ LI + + EA
Sbjct: 460 PDFVTYGTLVDAMCKCGKSAAALELFEEAVKG--GCVPDVVTYSALITGLVHENMAEEAY 517
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L + L D ++N ++ GY
Sbjct: 518 LLFTKL-------DVALWNAMILGY 535
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 9 DIFTYNFLVKCLCKCRSL----TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ T+N LV LC L T + VD+ G P+ VTY L+D +C
Sbjct: 426 NVVTWNILVHGLCVDDRLSDAETMLLTMVDE-----GFIPDFVTYGTLVDAMCKCGKSAA 480
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L G PD Y+ ++ G
Sbjct: 481 ALELFEEAVKGGCVPDVVTYSALITG 506
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PDI+TYN L+ LCK + +DQM S PN VTY +I ++C
Sbjct: 334 MLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM-VSRDCSPNAVTYNAIISSLCKEN 392
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA + L+ G PD +N++++G
Sbjct: 393 RVDEATEIARLLTSKGILPDVCTFNSLIQG 422
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ LC R L N + +M + G N+V Y LID C K + EA
Sbjct: 446 PDEFTYNMLIDSLCSSRKLEEALNLLKEMELN-GCARNVVIYNTLIDGFCKNKRIEEAEE 504
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G D YNT++ G
Sbjct: 505 IFDEMELQGVSRDSVTYNTLIDG 527
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T+N L++ LC + + + ++M+ G +P+ TY +LID++C+++
Sbjct: 404 LTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGK-GCRPDEFTYNMLIDSLCSSR 462
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L+ + +G + +YNT++ G+
Sbjct: 463 KLEEALNLLKEMELNGCARNVVIYNTLIDGF 493
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+ LCK + + +DQM G++P+ TY L+ + C T ++++A +
Sbjct: 517 DSVTYNTLIDGLCKSKRVEDAAQLMDQMIME-GLRPDKFTYNSLLTHFCKTGDIKKAADI 575
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V ++ SG PD Y T++ G
Sbjct: 576 VQTMTSSGCNPDIVTYATLISG 597
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ YN L+ CK + + D+M G+ + VTY LID +C +K + +A +L
Sbjct: 482 NVVIYNTLIDGFCKNKRIEEAEEIFDEMELQ-GVSRDSVTYNTLIDGLCKSKRVEDAAQL 540
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G +PD F YN+++ +
Sbjct: 541 MDQMIMEGLRPDKFTYNSLLTHF 563
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ CK + +F+ Q S G +P+ TY L++ +C + + AM +V A
Sbjct: 275 TVNVLINGFCKQGRIDQALSFI-QEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDA 333
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ G PD + YN+++ G
Sbjct: 334 MLLGGLDPDIYTYNSLISG 352
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN LV LCK VD M G+ P++ TY LI +C + EA++
Sbjct: 306 PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLG-GLDPDIYTYNSLISGLCKLGEIEEAVK 364
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + P+ YN I+
Sbjct: 365 ILDQMVSRDCSPNAVTYNAII 385
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD FTYN L+ CK + + V M +S G P++VTY LI +C
Sbjct: 544 MIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSS-GCNPDIVTYATLISGLCKAG 602
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A RL+ ++ G YN +++
Sbjct: 603 RVQVASRLLRSIQMKGMVLTPHAYNPVIQA 632
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 36/125 (28%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT---------- 50
++ +++ D+ T+N L+K LCK + +++M S G+ P+ T+T
Sbjct: 194 MVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEM-PSYGLSPDETTFTTIMQGYIEGG 252
Query: 51 -------------------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYN 85
+LI+ C + +A+ + GF+PD F YN
Sbjct: 253 NLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYN 312
Query: 86 TIMKG 90
T++ G
Sbjct: 313 TLVNG 317
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD YN L+ L L V + M I+ ++ T+ ILI +C +R
Sbjct: 163 RIKPDTRFYNVLLNVLVDANKLKLVESAHSSM-VRRRIRHDVSTFNILIKALCKAHQVRP 221
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ ++ + G PD + TIM+GY
Sbjct: 222 AILMMEEMPSYGLSPDETTFTTIMQGY 248
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ LCK + + ++F ++ GI+PN+VTYT L++ +CN+ +A R
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK-GIRPNVVTYTALVNGLCNSSRWSDAAR 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + P+ Y+ ++ +
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAF 270
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + PDI+TYN L+ LC L + M+ + ++VTYT +I +C T +
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVTYTTVIRGMCKTGKV 451
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L +LS G KPD Y T+M G
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSG 479
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++T+N ++ C C C ++ + + +M LG +P+ VT L++ C + +A+ L
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKM-LKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V + + G+KPD YN I+
Sbjct: 178 VDKMVEIGYKPDIVAYNAII 197
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T LV C+ ++ + VD+M +G KP++V Y +ID++C TK + +A
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ G +P+ Y ++ G
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNG 234
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI TY+ LV LC + D M S G ++V+Y LI+ C K
Sbjct: 286 MVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLM-VSKGCLADVVSYNTLINGFCKAK 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L +S G + YNT+++G+
Sbjct: 345 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P++ TY+ L+ K + ++M + I P++VTY+ L++ +C
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSLVNGLCLHD 309
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G D YNT++ G+
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGF 340
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K D+ +YN L+ CK + + +M + G+ N VTY LI
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM-SQRGLVSNTVTYNTLIQGFFQAG 379
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +A S + G PD + YN ++ G
Sbjct: 380 DVDKAQEFFSQMDFFGISPDIWTYNILLGG 409
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY LV LC + + M I PN++TY+ L+D +
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPNVITYSALLDAFVKNGKVL 277
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + PD Y++++ G
Sbjct: 278 EAKELFEEMVRMSIDPDIVTYSSLVNG 304
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ DI TY +++ +CK + ++ + G+KP++VTYT ++ +C L
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLH 487
Query: 64 EAMRLVSALSDSGF-KPDC 81
E L + + G K DC
Sbjct: 488 EVEALYTKMKQEGLMKNDC 506
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ LCK + + ++F ++ GI+PN+VTYT L++ +CN+ +A R
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK-GIRPNVVTYTALVNGLCNSSRWSDAAR 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + P+ Y+ ++ +
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAF 270
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + PDI+TYN L+ LC L + M+ + ++VTYT +I +C T +
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVTYTTVIRGMCKTGKV 451
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L +LS G KPD Y T+M G
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSG 479
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++T+N ++ C C C ++ + + +M LG +P+ VT L++ C + +A+ L
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKM-LKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V + + G+KPD YN I+
Sbjct: 178 VDKMVEIGYKPDIVAYNAII 197
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T LV C+ ++ + VD+M +G KP++V Y +ID++C TK + +A
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ G +P+ Y ++ G
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNG 234
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI TY+ L+ LC + D M S G ++V+Y LI+ C K
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM-VSKGCLADVVSYNTLINGFCKAK 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L +S G + YNT+++G+
Sbjct: 345 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P++ TY+ L+ K + ++M + I P++VTY+ LI+ +C
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSLINGLCLHD 309
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G D YNT++ G+
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGF 340
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K D+ +YN L+ CK + + +M + G+ N VTY LI
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM-SQRGLVSNTVTYNTLIQGFFQAG 379
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +A S + G PD + YN ++ G
Sbjct: 380 DVDKAQEFFSQMDFFGISPDIWTYNILLGG 409
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY LV LC + + M I PN++TY+ L+D +
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPNVITYSALLDAFVKNGKVL 277
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + PD Y++++ G
Sbjct: 278 EAKELFEEMVRMSIDPDIVTYSSLING 304
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ DI TY +++ +CK + ++ + G+KP++VTYT ++ +C L
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLH 487
Query: 64 EAMRLVSALSDSGF-KPDC 81
E L + + G K DC
Sbjct: 488 EVEALYTKMKQEGLMKNDC 506
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+FTYN L LCK ++ M G+KPN+VT+T+ I+ C NL
Sbjct: 421 KGINADVFTYNILANGLCKLHRYDEAKCILNSM-VEKGVKPNVVTFTMFIEIYCKEGNLA 479
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL + G P+ YNT++ Y
Sbjct: 480 EAERLFRDMEKKGEVPNIITYNTLIDAY 507
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ T+ ++ CK +L M G PN++TY LID C +
Sbjct: 453 MVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKK-GEVPNIITYNTLIDAYCKKE 511
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A ++ S + + G PD + Y++++ G
Sbjct: 512 KVKQAHKIKSEMINKGLLPDLYTYSSLIHG 541
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ TY L+ +CK + + +M+ S G+ NLV + +D C +
Sbjct: 351 RDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQ-SKGVDLNLVIFNTTMDGYCRRGKMD 409
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+RL + + G D F YN + G
Sbjct: 410 EALRLQAIMEKKGINADVFTYNILANG 436
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN L+ CK + + +M + G+ P+L TY+ LI C + EA++
Sbjct: 495 PNIITYNTLIDAYCKKEKVKQAHKIKSEM-INKGLLPDLYTYSSLIHGECIVGRVDEALK 553
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G + Y +++ G
Sbjct: 554 LFNEMRLKGITRNVATYTSMISG 576
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L PD++TY+ L+ C + ++MR GI N+ TYT +I +
Sbjct: 523 MINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLK-GITRNVATYTSMISGLSKEG 581
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + G PD V+ +++ +
Sbjct: 582 RADEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D++ Y+ ++ + ++ + D+M + I PN TY LI VC +
Sbjct: 316 KNIEMDVYVYSSMISWSRRLGNMKRAFALFDEM-SQRDIVPNAHTYGALIGGVCKAGQME 374
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + G + ++NT M GY
Sbjct: 375 AAEILLLEMQSKGVDLNLVIFNTTMDGY 402
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
L+ L +C + F +M S + + + T++ID +C + +A L+ +
Sbjct: 186 LLLALKRCGEVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGK 245
Query: 76 GF-KPDCFVYNTIMKGY 91
G KP+ F YNT++ Y
Sbjct: 246 GIVKPNVFTYNTLLNAY 262
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FT N L+K LCK + D+M S+GI PN+VTYT ++ + ++ A R
Sbjct: 190 PNVFTCNILIKALCKKNDVEGARKVFDEM-PSMGIVPNVVTYTTILGGYVSRGDMIGAKR 248
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L D G+ PD Y +M GY
Sbjct: 249 VFGELFDHGWLPDATTYTILMDGY 272
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K PD + L+ LCK ++ ++ G +L+TY LI +C
Sbjct: 358 LLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFER--GTISSLLTYNTLIAGMCEMG 415
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA RL + + G P+ F YN ++KG+
Sbjct: 416 ELCEAARLWDDMLEKGCVPNEFTYNMLIKGF 446
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N L+ L + ++V+ ++ G+ PN+ T ILI +C ++ A ++
Sbjct: 158 SLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDE 217
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y TI+ GY
Sbjct: 218 MPSMGIVPNVVTYTTILGGY 237
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ K T +D+M + G++PN +TY ++I C + EA+
Sbjct: 260 PDATTYTILMDGYVKQGRFTDAVKVMDEMEEN-GVEPNDITYGVIILGYCKERKSGEALN 318
Query: 68 LVSALSDSGFKPD 80
L++ + + + P+
Sbjct: 319 LLNDMLEKKYIPN 331
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ +C+ L D M G PN TY +LI +E +++V
Sbjct: 401 LLTYNTLIAGMCEMGELCEAARLWDDMLEK-GCVPNEFTYNMLIKGFLKVGKAKEVIKVV 459
Query: 70 SALSDSG 76
+ D G
Sbjct: 460 EEMLDKG 466
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TYN L+ LCK V + +M G +P++VT+ LI C + EA
Sbjct: 419 LQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDG-GCRPSVVTFGTLIHGYCKVGQIDEA 477
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+R+ ++ +SG +P+ +YNT++
Sbjct: 478 LRIFRSMDESGIQPNTVIYNTLI 500
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQ-MRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ N +V LCK L FV++ MR+ G PN VTY L C N+ A
Sbjct: 207 PDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMAC 266
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
LV+ + P+ NTI+ G
Sbjct: 267 ELVAKMEKERVTPNAVTLNTIVGG 290
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y ++ L + L ++ M+ + G + + Y ILI C K L EA
Sbjct: 351 PDAIMYFTMISGLTQAGRLDDAWSMATSMKKA-GFQLDAKAYNILIGGFCRRKRLNEAYE 409
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + ++G +PD + YNT++ G
Sbjct: 410 LLGEMKEAGLQPDVYTYNTLLSG 432
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN L+ C+ + L Y + +M+ + G++P++ TY L+ +C + L
Sbjct: 387 DAKAYNILIGGFCRRKRLNEAYELLGEMKEA-GLQPDVYTYNTLLSGLCKAGDFLAVDEL 445
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D G +P + T++ GY
Sbjct: 446 LGKMIDGGCRPSVVTFGTLIHGY 468
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD +N L+ L + L + MR + ++PN+VTY IL+ +C + +A+
Sbjct: 134 PPDTSAFNTLLDALAQAGDLPGMTQLFASMRDA-SVRPNVVTYGILVKGLCKAGRVGDAL 192
Query: 67 RLVSALS--DSGFKPDCFVYNTIMKG 90
++ +S +S PD + N I+ G
Sbjct: 193 SVLDGMSGPESDVCPDVVMLNNIVDG 218
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-GIKPNLVTYTILIDNVCNTKNL 62
+++ P+ T N +V LC + F + R + N VTY+ L+ +T N+
Sbjct: 275 ERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNV 334
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM L + D G PD +Y T++ G
Sbjct: 335 GVAMELFHEMVDEGNSPDAIMYFTMISG 362
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ YN L+ LCK R + D+MR + N+ T+ L+ + + +A
Sbjct: 489 IQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREK-HVPANVTTFNALLKGLRDKNMPEKA 547
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
L+ + + PD + +M+
Sbjct: 548 FELMDLMREGRCTPDYVTIDILME 571
>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ L+ LCK + + +VD+M G PN++TYT LID +C + + +A+
Sbjct: 362 PDVVAYSSLIDGLCKSGRINSALKYVDEMHDR-GQPPNVITYTSLIDALCKSHQVDKAIA 420
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D G + + + YN ++ G
Sbjct: 421 LLKKIKDQGIQANMYTYNILVDG 443
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ P++ TY L+ C L + +++M + PN+ T+ L+D +C +R
Sbjct: 218 KRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLK-NVNPNVCTFNTLVDGLCKEGKMR 276
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA LV+ + G PD F YN +M GY
Sbjct: 277 EAKSLVAVMMKEGVGPDVFTYNALMDGY 304
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY L++ LC + NF D++ S GIK + V+Y LI+ +C A+R
Sbjct: 117 PDIITYTTLIRGLCLNGQVKESLNFHDRL-VSQGIKLDHVSYGTLINGLCKIGQTGPALR 175
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +PD +YNTI+ G
Sbjct: 176 LLRKIEGEICRPDVVMYNTIIDG 198
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + +++TYN LV LCK LT + G ++VTY+I+I+ +C
Sbjct: 428 QGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMK-GHNVDVVTYSIMINGLCKESLFD 486
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L+S + D G PD Y TI+ +
Sbjct: 487 EALTLLSKMEDKGCVPDAIAYETIINAF 514
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TY L+ LCK + + +++ GI+ N+ TY IL+D +C L +A
Sbjct: 396 PPNVITYTSLIDALCKSHQVDKAIALLKKIKDQ-GIQANMYTYNILVDGLCKDGRLTDAQ 454
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
++ L G D Y+ ++ G
Sbjct: 455 KVFQDLLMKGHNVDVVTYSIMING 478
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 4 KQLPPDIFTYN------FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+ + PD+FTYN FLVK K ++ V+N + QM G+ ++ +Y+++I +
Sbjct: 288 EGVGPDVFTYNALMDGYFLVKEAGKAKN---VFNIMAQM----GVTCDVHSYSVMISGLS 340
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K L EAM L + + PD Y++++ G
Sbjct: 341 KMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDG 373
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I + ++ L K + V + +M GI+ N +T ILI++ C+ + + A
Sbjct: 46 PPPIIKFGKILGSLVKTKHYPIVIHLFQRMELH-GIQSNYITLNILINSYCHLRQINSAF 104
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + + G++PD Y T+++G
Sbjct: 105 SVFAKILKLGYQPDIITYTTLIRG 128
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ C R + + ++ ++ LG +P+++TYT LI +C ++E++
Sbjct: 86 TLNILINSYCHLRQINSAFSVFAKI-LKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDR 144
Query: 72 LSDSGFKPDCFVYNTIMKG 90
L G K D Y T++ G
Sbjct: 145 LVSQGIKLDHVSYGTLING 163
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ T+N LV LCK + + V M G+ P++ TY L+D K
Sbjct: 250 MVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKE-GVGPDVFTYNALMDGYFLVK 308
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + + ++ G D Y+ ++ G
Sbjct: 309 EAGKAKNVFNIMAQMGVTCDVHSYSVMISG 338
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + + D +Y L+ LCK + ++ + +P++V Y +ID +C K
Sbjct: 145 LVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEI-CRPDVVMYNTIIDGLCKDK 203
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+A L + + P+ Y +++ G+
Sbjct: 204 LVRDAFDLYCEMFEKRVFPNVVTYTSLIYGF 234
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ LCKC + D M G +P +VTY+ LID +C + + +
Sbjct: 63 PTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCK 122
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ G P+ YNT++
Sbjct: 123 LLEEMAGRGCAPNAVTYNTLV 143
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY L+ L K R + Y+ ++ RA G P +VTY +ID +C
Sbjct: 21 MVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK-GCHPTVVTYNTMIDGLCKCG 79
Query: 61 NLREAMRLVSALS-DSGFKPDCFVYNTIMKG 90
+ A+ L ++ GF+P Y+T++ G
Sbjct: 80 RIENALTLYDDMAIHFGFRPTVVTYSTLIDG 110
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L PD+ T+N ++ LCK + + +N V + G +PN+VTY+ LID +
Sbjct: 199 MIESGLSPDVITFNSVLDGLCKEQRILDAHN-VFKRALERGCRPNVVTYSTLIDGLSKMA 257
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L++ + + G + + Y+T++ G
Sbjct: 258 KMDEALQLLAKMVELGCRANTVTYSTVVDG 287
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREA 65
PP++ T+ ++K LCK + + VD+M G+ P+++T+ ++D +C + + +A
Sbjct: 168 PPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDA 227
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G +P+ Y+T++ G
Sbjct: 228 HNVFKRALERGCRPNVVTYSTLIDG 252
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ L K + + +M LG + N VTY+ ++D + + +A+
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKM-VELGCRANTVTYSTVVDGLLKVGRMEDAVV 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D+G PD YNT++ G+
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGF 323
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV L ++ ++QM A+ G P L+T+ ++I +C + A R
Sbjct: 134 PNAVTYNTLVNALLGQGRSKEAFSLLEQMAAN-GCPPELITFGLIIKGLCKEGEIEAAFR 192
Query: 68 LVSA--LSDSGFKPDCFVYNTIMKG 90
+V + +SG PD +N+++ G
Sbjct: 193 VVDEMFMIESGLSPDVITFNSVLDG 217
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T++ L+ LC + T M A G P++VTY L+D +C + EA
Sbjct: 452 PDVVTFSILINGLCDAGRIDTGLELFRGM-AERGCVPDMVTYATLVDRLCRASRVDEAFD 510
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G PD T++ G
Sbjct: 511 LFQQMRSDGLSPDRSTRRTMIHG 533
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ +V LCK +T + ++M + P+++ Y+ LID +C + EA
Sbjct: 381 PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYE 440
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + +G PD ++ ++ G
Sbjct: 441 FLERMIRAGRIPDVVTFSILING 463
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY+ +V L K + + QMR + G P+ VTY LID + LREA+ L+
Sbjct: 280 TYSTVVDGLLKVGRMEDAVVVLRQMRDA-GCLPDAVTYNTLIDGFFKRQRLREAVGLLRE 338
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ ++GF P Y T+ G
Sbjct: 339 MLEAGFHPSVVTYTTLCHG 357
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ L+ LC+ + +++M A G PN VTY L++ + +EA
Sbjct: 99 PTVVTYSTLIDGLCRDHEVDKGCKLLEEM-AGRGCAPNAVTYNTLVNALLGQGRSKEAFS 157
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G P+ + I+KG
Sbjct: 158 LLEQMAANGCPPELITFGLIIKG 180
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
++ LCK R + QM I P++VTY LID + + ++EA L
Sbjct: 1 MIDGLCKSRKVDKAITLFKQM-VDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59
Query: 76 GFKPDCFVYNTIMKG 90
G P YNT++ G
Sbjct: 60 GCHPTVVTYNTMIDG 74
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L LC+ +D M A+ G PN +TY+ ++D +C + EA+
Sbjct: 346 PSVVTYTTLCHGLCRSGRFDEAVEILDYM-AARGCAPNAITYSSIVDGLCKAGRVTEALG 404
Query: 68 LVSALS-DSGFKPDCFVYNTIMKG 90
++ D P Y+ ++ G
Sbjct: 405 YFEKMARDEVVAPHVIAYSALIDG 428
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ TY+ L+ LC+ R + F +M+ LG+KPN +TYT +I + N+ EA
Sbjct: 751 PPNQITYSILINGLCRVRKFNKAFVFWQEMQ-KLGLKPNTITYTTMISGLAKAGNILEAS 809
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L S +G PD YN +++G
Sbjct: 810 GLFSRFKANGGIPDSASYNAMIEG 833
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L DI YN + C K + + F +M+ S G+ P+ VTYT +I +C L EA
Sbjct: 261 LDADIVLYNVCIDCFGKAGKVDMSWKFFHEMK-SHGLMPDDVTYTSMIGVLCKANRLDEA 319
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L L + P + YNT++ GY
Sbjct: 320 VELFEQLEQNRKVPCAYAYNTMIMGY 345
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC+ L D M + G+ PN++T I+ID +C + L EA
Sbjct: 402 PNVPTYNILIDMLCREGKLNAALEIRDDMERA-GLFPNVLTVNIMIDRLCKAQKLEEACS 460
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D P+ +++++ G
Sbjct: 461 IFEGMDDKVCTPNAVTFSSLIDG 483
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L P+++T+N L+ L K + M+ L PN +TY+ILI+ +C +
Sbjct: 710 LMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMK-DLKCPPNQITYSILINGLCRVR 768
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + G KP+ Y T++ G
Sbjct: 769 KFNKAFVFWQEMQKLGLKPNTITYTTMISG 798
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + TY ++ L K L Y ++ +++ GIK N+V Y+ LID + EA
Sbjct: 646 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSN-GIKLNVVVYSSLIDGFGKVGRIDEAY 704
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
++ L G P+ + +N ++
Sbjct: 705 LIMEELMQKGLTPNVYTWNCLL 726
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN ++ CK + Y +++M+ G P +VTY +ID + L EA L
Sbjct: 613 DTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK-GHPPTVVTYGSVIDGLAKIDRLDEAYML 671
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+G K + VY++++ G+
Sbjct: 672 FEEAKSNGIKLNVVVYSSLIDGF 694
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ CL K R + ++M+ PN+ TY ILID +C L A+
Sbjct: 368 PSVIAYNCILTCLGKKRRVEEALRIFEEMKRD--AVPNVPTYNILIDMLCREGKLNAALE 425
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +G P+ N ++
Sbjct: 426 IRDDMERAGLFPNVLTVNIMI 446
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T N ++ LCK + L + + M + PN VT++ LID + + +A
Sbjct: 435 LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKV-CTPNAVTFSSLIDGLGKCGRVDDA 493
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + D G P VY ++++ +
Sbjct: 494 YSLYEKMLDCGHVPGAIVYTSLIRSF 519
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TYN L+ LCK +T+ N +++M G ++VTYT L+D +C +
Sbjct: 316 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR-GQPADVVTYTSLLDALCKNQ 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL +A L + + G +P + Y ++ G
Sbjct: 375 NLDKATALFMKMKERGIQPTMYTYTALIDG 404
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P ++ YN L+ LCK ++ N + M GIKP +VTY+ L+D C
Sbjct: 211 MILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKE-GIKPGVVTYSTLMDGYCLVG 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A ++ A+ G P+ + YN ++ G
Sbjct: 270 EVQNAKQIFHAMVQMGVNPNVYSYNIMING 299
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ C L ++ +D+M I P + Y ILI+ +C N++EA
Sbjct: 183 PDAITYTTLIYGFCLLGQLMGAFSLLDEMILK-NINPGVYIYNILINALCKEGNVKEAKN 241
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ ++ G KP Y+T+M GY
Sbjct: 242 LLAVMTKEGIKPGVVTYSTLMDGY 265
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TY L+ LCK ++L +M+ GI+P + TYT LID +C L+ A
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKER-GIQPTMYTYTALIDGLCKGGRLKNAQ 415
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L L G D + Y ++ G
Sbjct: 416 ELFQHLLVKGCCIDVWTYTVMISG 439
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T N L+K LC + +F D++ A G + + V+Y L++ +C R A++
Sbjct: 78 PDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQ-GFQMDHVSYGTLLNGLCKIGETRCAVK 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D +P+ +YNTI+ G
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDG 159
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PP I +N ++ L K + T + QM GI+ N VT ILI+ C+
Sbjct: 2 LLVRHTPP-IIEFNKILGSLAKMKQYLTAISLSKQMEVK-GIRANFVTLNILINCFCHLG 59
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + ++ + G++PD NT+MKG
Sbjct: 60 QMAFSFSVLGKILKLGYQPDTITLNTLMKG 89
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK + +M +PN+V Y +ID +C K + EA L
Sbjct: 114 DHVSYGTLLNGLCKIGETRCAVKLL-RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDL 172
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + G PD Y T++ G+
Sbjct: 173 YSEMDARGIFPDAITYTTLIYGF 195
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P ++TY L+ LCK L + G ++ TYT++I +C
Sbjct: 389 RGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK-GCCIDVWTYTVMISGLCKEGMFD 447
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+ + S + D+G P+ + I++
Sbjct: 448 EALAIKSKMEDNGCIPNAVTFEIIIR 473
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + + T N L+ C C + ++ + ++ LG +P+ +T L+ +C ++
Sbjct: 39 KGIRANFVTLNILINCFCHLGQMAFSFSVLGKI-LKLGYQPDTITLNTLMKGLCLKGEVK 97
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + GF+ D Y T++ G
Sbjct: 98 KSLHFHDKVVAQGFQMDHVSYGTLLNG 124
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV C+ + VD MR G+KPNLVT+ +++ +C + +A +
Sbjct: 190 PNAVTYNTLVAAFCRAGEVDRAERLVDMMREG-GLKPNLVTFNSVVNGICKAGRMEDARK 248
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD YNT++ GY
Sbjct: 249 VFDEMVKEGLAPDGVSYNTLVGGY 272
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN LV+ LC + + MR + G PN VTY L+ C + A R
Sbjct: 155 PNVYTYNILVRALCGRGHRKEALSVLRDMRGA-GCDPNAVTYNTLVAAFCRAGEVDRAER 213
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + G KP+ +N+++ G
Sbjct: 214 LVDMMREGGLKPNLVTFNSVVNG 236
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY+ L++ LC+ + L + M SLG++P+ VTYT LID C N+ A+
Sbjct: 435 PDAITYSSLIRVLCEEKRLGDAHVLFKNM-ISLGLQPDEVTYTSLIDGHCKEGNVERALS 493
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +G PD Y+ ++ G
Sbjct: 494 LHDEMVKAGVLPDVVTYSVLING 516
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ T+ L+ +CK +L V +MR G++ N +T+T LID C L
Sbjct: 291 KGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRER-GLQMNEITFTALIDGFCKKGFLD 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ V + +P YN ++ GY
Sbjct: 350 DALLAVREMRQCRIQPSVVCYNALINGY 377
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TY+ ++ CK + + QM + G+ P+ +TY+ LI +C K L
Sbjct: 396 KGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLEN-GVLPDAITYSSLIRVLCEEKRLG 454
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + G +PD Y +++ G+
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDGH 482
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ L SL + F D M S G+ PN+ TY IL+ +C + +EA+
Sbjct: 121 PSVLAYNAVLLALSDA-SLPSARRFFDSM-LSDGVAPNVYTYNILVRALCGRGHRKEALS 178
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G P+ YNT++ +
Sbjct: 179 VLRDMRGAGCDPNAVTYNTLVAAF 202
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + YN L+ C + V +M A G+KP++VTY+ ++ C +
Sbjct: 362 RIQPSVVCYNALINGYCMVGRMDEARELVREMEAK-GVKPDVVTYSTILSAYCKNGDTHS 420
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A +L + ++G PD Y+++++
Sbjct: 421 AFQLNQQMLENGVLPDAITYSSLIR 445
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+ L+ CK L V +MR I+P++V Y LI+ C + EA LV
Sbjct: 334 TFTALIDGFCKKGFLDDALLAVREMR-QCRIQPSVVCYNALINGYCMVGRMDEARELVRE 392
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G KPD Y+TI+ Y
Sbjct: 393 MEAKGVKPDVVTYSTILSAY 412
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCR-SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ + L PD +YN LV CK S + F + R GI P++VT+T LI +C
Sbjct: 253 MVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRK--GIMPDVVTFTSLIHVMCKA 310
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL A+ LV + + G + + + ++ G+
Sbjct: 311 GNLERAVGLVREMRERGLQMNEITFTALIDGF 342
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ CK ++ + D+M G+ P++VTY++LI+ + + +EA
Sbjct: 468 LQPDEVTYTSLIDGHCKEGNVERALSLHDEM-VKAGVLPDVVTYSVLINGLSKSARTKEA 526
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
RL+ L P Y+ +M+
Sbjct: 527 QRLLFKLYHEEPVPANIKYDALMR 550
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T+N +V +CK + D+M G+ P+ V+Y L+ C EA
Sbjct: 223 LKPNLVTFNSVVNGICKAGRMEDARKVFDEM-VKEGLAPDGVSYNTLVGGYCKVGCSHEA 281
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + + ++ G PD + +++
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLI 304
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I TY L LCKC + T + +M G++ N+ TY L++ +C N+ +A
Sbjct: 459 LTPNIVTYTALADGLCKCGEVDTANELLHEM-CRKGLELNIYTYNSLVNGLCKAGNIDQA 517
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L+ + +GF PD Y T+M Y
Sbjct: 518 VKLMKDMEVAGFHPDAVTYTTLMDAY 543
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +I+TYN LV LCK ++ + M + G P+ VTYT L+D C ++ +
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVA-GFHPDAVTYTTLMDAYCKSREMV 550
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + D +P +N +M G+
Sbjct: 551 RAHELLRQMLDRELQPTVVTFNVLMNGF 578
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+L PD TY L+ CK + ++ +QM +G+ PN+VTYT L D +C
Sbjct: 419 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM-LQMGLTPNIVTYTALADGLCKCG 477
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L+ + G + + + YN+++ G
Sbjct: 478 EVDTANELLHEMCRKGLELNIYTYNSLVNG 507
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y+ ++ C+ L V +++M+ G+KPN TY +I +C T + EA R
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIK-GLKPNPYTYNGVILLLCKTGKVAEAER 344
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G PD +Y T++ G+
Sbjct: 345 VLREMISEGIAPDGVIYTTLIDGF 368
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ +TYN ++ LCK + + +M S GI P+ V YT LID C N+
Sbjct: 317 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREM-ISEGIAPDGVIYTTLIDGFCKLGNVS 375
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A RL + PD Y ++ G
Sbjct: 376 SAYRLFDEMQKRKISPDFITYTAVICG 402
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD Y L+ CK ++++ Y D+M+ I P+ +TYT +I +C T
Sbjct: 349 MISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKR-KISPDFITYTAVICGLCQTG 407
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +L + +PD Y ++ GY
Sbjct: 408 RVMEADKLFHEMVCKRLEPDEVTYTALIDGY 438
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ K + P+ TYN L+K C R+ T +Y + + G+ P+ TY ILI C
Sbjct: 594 MLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM----CAKGVVPDGNTYNILIKGHC 649
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+N++EA L + GF YN ++KG+
Sbjct: 650 KARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGF 683
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P + T+N L+ C L + M GI PN TY LI C
Sbjct: 559 MLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEK-GIMPNATTYNSLIKQYCIRN 617
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+R + + G PD YN ++KG+
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGH 648
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+YN + LC+ + + + QM G P++++Y+ +I+ C L+ ++L+
Sbjct: 255 SYNIITHSLCQLGRVVEAHQLLLQMELR-GCIPDVISYSTVINGYCQVGELQRVLKLIEE 313
Query: 72 LSDSGFKPDCFVYNTIM 88
+ G KP+ + YN ++
Sbjct: 314 MQIKGLKPNPYTYNGVI 330
>gi|399107214|gb|AFP20371.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + B GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIBEGFKPDVVTYSVVVNG 98
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 80 MIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IBEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCXFNGLAINSMFYSSLIDG 133
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
KQ+ P++ TY+ L+ LCK ++ VD+M G PN+VTY+ ++D +C +
Sbjct: 276 KQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDR-GQPPNIVTYSSILDALCKNHQVD 334
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L++ + + G +P+ + Y ++KG
Sbjct: 335 NAIALLTQMKNQGIQPNMYTYTILIKG 361
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+I TY+ ++ LCK + + QM+ GI+PN+ TYTILI +C + L +A
Sbjct: 314 PPNIVTYSSILDALCKNHQVDNAIALLTQMKNQ-GIQPNMYTYTILIKGLCQSGKLEDAR 372
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ L G + + Y +++G+
Sbjct: 373 KVFEDLLVKGHNLNVYTYTVMIQGF 397
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---------GIKPNLVTYTILIDNVCN 58
P+ T N L+K LC + + V +++ ++ I P++ T+TIL+D C
Sbjct: 130 PNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCK 189
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + G KP YN++M GY
Sbjct: 190 EGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD++T+ LV CK + N + M GIKP +VTY L+D K
Sbjct: 168 MILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQ-GIKPGVVTYNSLMDGYFLVK 226
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + ++ G PD Y+ ++ G+
Sbjct: 227 QVNKAKSIFNTMAQLGVSPDIQSYSILINGF 257
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Query: 1 LIFKQLPPDIFTYN------FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
++ + + P + TYN FLVK + K +S ++N + A LG+ P++ +Y+ILI+
Sbjct: 203 MMIQGIKPGVVTYNSLMDGYFLVKQVNKAKS---IFNTM----AQLGVSPDIQSYSILIN 255
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C K + EAM L+ + P+ Y++++ G
Sbjct: 256 GFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDG 291
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+I +N ++ L K + TV ++ Q GIKPNLV ILI++ C ++ A
Sbjct: 60 PPNI-EFNKILGSLVKSKHYHTVL-YLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAF 117
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G+KP+ NT++KG
Sbjct: 118 SVLTKILKMGYKPNTITLNTLIKG 141
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+++TY L+K LC+ L + + G N+ TYT++I C+
Sbjct: 346 QGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVK-GHNLNVYTYTVMIQGFCDKGLFD 404
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ L+S + D+G P+ Y I+
Sbjct: 405 EALTLLSKMEDNGCIPNAKTYEIII 429
>gi|341605707|gb|AEK82956.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + B GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIBEGFKPDVVTYSVVVNG 96
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 78 MIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IBEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCXFNGLAINSMFYSSLIDG 131
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + +++T + ++ C C+CR L ++ + ++ LG +PN +T++ LI+ +C +
Sbjct: 214 LKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKI-IKLGYEPNTITFSTLINGLCLEGRV 272
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ LV + + G KPD NT++ G
Sbjct: 273 SEALELVDRMVEMGHKPDLITINTLVNG 300
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TY L+ CK L VD M S G PN+ T+ ILI+ C
Sbjct: 457 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM-VSKGCDPNIRTFNILINGYCKAN 515
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + L +S G D YNT+++G+
Sbjct: 516 RIDDGLELFRKMSLRGVVADTVTYNTLIQGF 546
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L++ C+ L +M S + PN+VTY IL+D +C+ +A+ +
Sbjct: 535 DTVTYNTLIQGFCELGKLNVAKELFQEM-VSRKVPPNIVTYKILLDGLCDNGESEKALEI 593
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ S + D +YN I+ G
Sbjct: 594 FEKIEKSKMELDIGIYNIIIHG 615
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L +M GI P+ +TYT LID C
Sbjct: 422 MIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM-IHRGIAPDTITYTSLIDGFCKEN 480
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +A ++V + G P+ +N ++ GY
Sbjct: 481 HLDKANQMVDLMVSKGCDPNIRTFNILINGY 511
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI YN ++ +C + ++ + G+KP + TY I+I +C L EA L
Sbjct: 605 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELL 663
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD + YN +++ +
Sbjct: 664 FRKMEEDGHAPDGWTYNILIRAH 686
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T++ L+ LC ++ VD+M +G KP+L+T L++ +C + EAM
Sbjct: 254 PNTITFSTLINGLCLEGRVSEALELVDRM-VEMGHKPDLITINTLVNGLCLSGKEAEAML 312
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + + G +P+ Y ++
Sbjct: 313 LIDKMVEYGCQPNAVTYGPVL 333
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y+ ++ LCK SL +N ++M GI N++TY ILI CN + +L
Sbjct: 360 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKL 418
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + P+ ++ ++ +
Sbjct: 419 LRDMIKRKINPNVVTFSVLIDSF 441
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T N LV LC +D+M G +PN VTY +++ +C + AM
Sbjct: 289 PDLITINTLVNGLCLSGKEAEAMLLIDKM-VEYGCQPNAVTYGPVLNVMCKSGQTALAME 347
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + K D Y+ I+ G
Sbjct: 348 LLRKMEERNIKLDAVKYSIIIDG 370
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY ++ +CK + +M IK + V Y+I+ID +C +L A
Sbjct: 324 PNAVTYGPVLNVMCKSGQTALAMELLRKMEER-NIKLDAVKYSIIIDGLCKHGSLDNAFN 382
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G + YN ++ G+
Sbjct: 383 LFNEMEMKGITTNIITYNILIGGF 406
>gi|224098467|ref|XP_002334553.1| predicted protein [Populus trichocarpa]
gi|222873070|gb|EEF10201.1| predicted protein [Populus trichocarpa]
Length = 149
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P IFTY L++ LC +++M SL I PN+VT+ +L+D C +
Sbjct: 39 KDISPTIFTYTSLIQGLCNFSRWKEASALLNEM-TSLNIMPNVVTFNVLVDTFCKEGKVL 97
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ +++ G +PD YN++M GY
Sbjct: 98 AAEGVLKTMTEMGVEPDVVTYNSLMYGY 125
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G + N+VTY+ LI ++C + + EA+ + S + P F Y ++++G
Sbjct: 5 GCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQG 54
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +N LV LCK L+ +++M + GI P++VTY LID +C + + EA +
Sbjct: 171 PDSVLFNILVHGLCKANQLSEARQMIEEM-SERGIVPDVVTYNSLIDGLCKSYRMEEARQ 229
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +P+ YNT++ GY
Sbjct: 230 LLETMVKRKVRPNLVTYNTLIYGY 253
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK + ++ M ++PNLVTY LI C T A +
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETM-VKRKVRPNLVTYNTLIYGYCKTGCTGLAHQ 264
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + SG PD +N+++ G+
Sbjct: 265 LIERMIQSGTHPDVVTFNSLISGF 288
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T++ +V+ LC +L+ + R S+ P+ V + IL+ +C L EA +
Sbjct: 138 PDVVTHSSIVQALCNTGNLSRAMQY---FRESVECAPDSVLFNILVHGLCKANQLSEARQ 194
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ +S+ G PD YN+++ G
Sbjct: 195 MIEEMSERGIVPDVVTYNSLIDG 217
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ C+ + + M+ L PNLVTY +LI +C+ EA
Sbjct: 276 PDVVTFNSLISGFCQKSKIDKACEVLHLMKKGL-CAPNLVTYNVLISGLCDAGRANEACE 334
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S + G PD YN+++
Sbjct: 335 LLSEMDGRGILPDIITYNSLI 355
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ C+ + + + + G+ P+ ++Y L + ++ EA
Sbjct: 346 PDIITYNSLIGIFCRNFQIEQAFQ-IQNLMVERGVIPDGISYCTLAVALLKSERFDEAFA 404
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D+G P+ F +N++M+G
Sbjct: 405 LLDNMFDAGAIPNLFTFNSLMEG 427
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ CK + + + +M+ G P++VT++ ++ +CNT NL AM+
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKER-GHSPDVVTHSSIVQALCNTGNLSRAMQYFRE 165
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ PD ++N ++ G
Sbjct: 166 SVECA--PDSVLFNILVHG 182
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TYN L+ CK + +++M S G P++VT+ LI C
Sbjct: 234 MVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQS-GTHPDVVTFNSLISGFCQKS 292
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A ++ + P+ YN ++ G
Sbjct: 293 KIDKACEVLHLMKKGLCAPNLVTYNVLISG 322
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FT N L++ L K R Y N +TY LI C ++ A +L++
Sbjct: 70 FTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLA 129
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G PD +++I++
Sbjct: 130 EMKERGHSPDVVTHSSIVQA 149
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I TY L LCKC + T + +M G++ N+ TY L++ +C N+ +A
Sbjct: 359 LTPNIVTYTALADGLCKCGEVDTANELLHEM-CRKGLELNIYTYNSLVNGLCKAGNIDQA 417
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L+ + +GF PD Y T+M Y
Sbjct: 418 VKLMKDMEVAGFHPDAVTYTTLMDAY 443
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +I+TYN LV LCK ++ + M + G P+ VTYT L+D C ++ +
Sbjct: 392 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVA-GFHPDAVTYTTLMDAYCKSREMV 450
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + D +P +N +M G+
Sbjct: 451 RAHELLRQMLDRELQPTVVTFNVLMNGF 478
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+L PD TY L+ CK + ++ +QM +G+ PN+VTYT L D +C
Sbjct: 319 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM-LQMGLTPNIVTYTALADGLCKCG 377
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L+ + G + + + YN+++ G
Sbjct: 378 EVDTANELLHEMCRKGLELNIYTYNSLVNG 407
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ +TYN ++ LCK + + +M S GI P+ V YT LID C N+
Sbjct: 217 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREM-ISEGIAPDGVIYTTLIDGFCKLGNVS 275
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A RL + PD Y ++ G
Sbjct: 276 SAYRLFDEMQKRKISPDFITYTAVICG 302
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD Y L+ CK ++++ Y D+M+ I P+ +TYT +I +C T
Sbjct: 249 MISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKR-KISPDFITYTAVICGLCQTG 307
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +L + +PD Y ++ GY
Sbjct: 308 RVMEADKLFHEMVCKRLEPDEVTYTALIDGY 338
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ K + P+ TYN L+K C R+ T +Y + + G+ P+ TY ILI C
Sbjct: 494 MLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM----CAKGVVPDGNTYNILIKGHC 549
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+N++EA L + GF YN ++KG+
Sbjct: 550 KARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGF 583
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P + T+N L+ C L + M GI PN TY LI C
Sbjct: 459 MLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEK-GIMPNATTYNSLIKQYCIRN 517
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+R + + G PD YN ++KG+
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILIKGH 548
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 29 VYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
V +++M+ G+KPN TY +I +C T + EA R++ + G PD +Y T++
Sbjct: 207 VLKLIEEMQIK-GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLI 265
Query: 89 KGY 91
G+
Sbjct: 266 DGF 268
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ ++L PD+ TYN L+ +C+ L D M A I PN +TY+ILID+ C
Sbjct: 428 LLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAR-EILPNHITYSILIDSHCEKG 486
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + G P+ YN+I+KGY
Sbjct: 487 QVEDAFGFLDEMVKKGNLPNIRTYNSIIKGY 517
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK L +++M G+ P+L T+T LI C N A++
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEKLLNEMEER-GVTPDLCTFTTLIHGYCRQGNFENALQ 423
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L +PD YN+++ G
Sbjct: 424 LFDTLLRQRLRPDVVTYNSLIDG 446
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ K ++ +N + M + ++P+ VTY ++I+ N+++A R
Sbjct: 540 PDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM-VRPDAVTYNMIINGFSEQGNMQDAGR 598
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + DSG +PD + Y +++ G+
Sbjct: 599 VFKGMGDSGIEPDRYTYMSLINGH 622
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y ++ C+ S++ D+M G P++VTY L++ +C L +A
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEM-VGFGCLPDVVTYNTLLNGLCKQHRLLDA 386
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L++ + + G PD + T++ GY
Sbjct: 387 EKLLNEMEERGVTPDLCTFTTLIHGY 412
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+ TY+ L+ C+ + + F+D+M G PN+ TY +I C + N++
Sbjct: 466 REILPNHITYSILIDSHCEKGQVEDAFGFLDEM-VKKGNLPNIRTYNSIIKGYCRSGNVK 524
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + PD +NT++ GY
Sbjct: 525 KGQQFLQKMRQDNVFPDLITFNTLIHGY 552
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ +++ L+ + + ++ +M+ LG+ P+ V YT++I C ++
Sbjct: 291 RYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKG-LGLVPDGVIYTMVIGGFCRAGSMS 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R+ + G PD YNT++ G
Sbjct: 350 EALRVRDEMVGFGCLPDVVTYNTLLNG 376
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T N +V CK + +M + P++VT+ +LID ++ A+ LV
Sbjct: 158 YTLNIMVHSYCKTLEFDGADTVISEMEKRC-VFPDVVTHNVLIDARFRAGDVDAAIALVD 216
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
++++ G KP YN+++KG
Sbjct: 217 SMANRGLKPGIVTYNSVLKG 236
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ + + VD M A+ G+KP +VTY ++ +C + +A
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSM-ANRGLKPGIVTYNSVLKGLCKHRRFDKAKE 248
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + PD +N ++ G+
Sbjct: 249 VFRTMDQCSVAPDVRSFNILIGGF 272
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSL---TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ L P I TYN ++K LCK R V+ +DQ + P++ ++ ILI C
Sbjct: 221 RGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQ----CSVAPDVRSFNILIGGFCRVG 276
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++EA++ + PD ++ ++
Sbjct: 277 EVKEAVKFYKEMQHRYVTPDVVSFSCLI 304
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+I+TYN L+ LCK + N + M G+KP++V Y+IL+D C
Sbjct: 211 MILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKK-GVKPDVVIYSILMDGYCLVG 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A ++ + +G PD + YN I+ G
Sbjct: 270 EVQKAKQIFLVMVQTGVNPDVYSYNIIING 299
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L+ LCK +TT+ + +M G NLVTY L+D +C +
Sbjct: 316 MLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHR-GQPANLVTYNSLLDGLCKNQ 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL +A+ L + + G +P+ + Y ++ G
Sbjct: 375 NLDKAIALFMKMKERGIQPNKYTYTALIDG 404
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ C L + +++M I PN+ TY LID +C ++E+
Sbjct: 183 PDVITYTTLICGFCLAGQLMEAFGLLNEMILK-NINPNIYTYNTLIDTLCKEGKVKESKN 241
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ ++ G KPD +Y+ +M GY
Sbjct: 242 LLAVMTKKGVKPDVVIYSILMDGY 265
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + +PP I + ++ L K + TV + QM A GI P+LVT +ILI+ C+
Sbjct: 2 LLLRHIPP-IIEFGKILGSLVKMKHYPTVISLSKQMEAK-GIVPDLVTLSILINCFCHLG 59
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + ++ + G++P+ + NT+MKG
Sbjct: 60 QMAFSFSVLGKILKLGYQPNTIILNTLMKG 89
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ TYN L+ LCK ++L +M+ GI+PN TYT LID +C L++
Sbjct: 357 PANLVTYNSLLDGLCKNQNLDKAIALFMKMKER-GIQPNKYTYTALIDGLCKGGRLKKGQ 415
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L L G+ D + Y ++ G
Sbjct: 416 ALFQHLLVKGYCIDVWTYTVMISG 439
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ ++ LCK + + Y+ +M A GI P+++TYT LI C L EA
Sbjct: 148 PDVVMYSTIIDGLCKDKLVDEAYDLYSEMNAR-GIFPDVITYTTLICGFCLAGQLMEAFG 206
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + P+ + YNT++
Sbjct: 207 LLNEMILKNINPNIYTYNTLI 227
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ N L+K LC + +F D++ A G + + V+Y IL++ +C R A++
Sbjct: 78 PNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQ-GFQMDQVSYGILLNGLCKIGETRCAIK 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D +PD +Y+TI+ G
Sbjct: 137 LLRTIEDRSTRPDVVMYSTIIDG 159
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK + + +P++V Y+ +ID +C K + EA L
Sbjct: 114 DQVSYGILLNGLCKIGETRCAIKLLRTIEDR-STRPDVVMYSTIIDGLCKDKLVDEAYDL 172
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S ++ G PD Y T++ G+
Sbjct: 173 YSEMNARGIFPDVITYTTLICGF 195
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ T + L+ C C + ++ + ++ LG +PN + L+ +C ++
Sbjct: 39 KGIVPDLVTLSILINCFCHLGQMAFSFSVLGKI-LKLGYQPNTIILNTLMKGLCLKGEVK 97
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + GF+ D Y ++ G
Sbjct: 98 KSLHFHDKVVAQGFQMDQVSYGILLNG 124
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ +TY L+ LCK L + G ++ TYT++I +C
Sbjct: 389 RGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVK-GYCIDVWTYTVMISGLCKEGMFD 447
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+ + S + D+G P+ + I++
Sbjct: 448 EALAMKSKMEDNGCIPNAVTFEIIIR 473
>gi|341605727|gb|AEK82966.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605729|gb|AEK82967.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + B GFKPD Y+ ++ G
Sbjct: 71 AIRLLHRMIBEGFKPDVVTYSVVVNG 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 78 MIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IBEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 131
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ CK + + F+ M G++PNL+T+ ++I+ +C L+E
Sbjct: 16 PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLK-GLEPNLITFNMIINGLCRDGRLKETSE 74
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +S G+ PD YNT++ GY
Sbjct: 75 VLVEMSRKGYVPDEVTYNTLVNGY 98
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P++ TY L+ +CK +L F DQM G+ PN TYT +I+
Sbjct: 114 MVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVR-GLCPNERTYTTIINGFAQQG 172
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA R+++ ++ SGF P YN ++ G+
Sbjct: 173 LLDEAYRVLNEMTRSGFIPSIVTYNALINGH 203
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD TY+ L++ LC+ R LT + +M ++ + P+ TYT LI+ C
Sbjct: 254 MIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEM-LTIKLPPDEFTYTTLINAYCKEG 312
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L +A+ L + GF PD YN ++ G
Sbjct: 313 DLNKALHLHDEMIQKGFLPDAVTYNVLING 342
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN LV CK + +M + G+ PN+VTYT LI+++C NL AM
Sbjct: 86 PDEVTYNTLVNGYCKEGNFHQALVLHAEMVRN-GLSPNVVTYTSLINSMCKAGNLNRAME 144
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y TI+ G+
Sbjct: 145 FFDQMHVRGLCPNERTYTTIINGF 168
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+LPPD FTY L+ CK L + D+M G P+ VTY +LI+ + +E
Sbjct: 293 KLPPDEFTYTTLINAYCKEGDLNKALHLHDEM-IQKGFLPDAVTYNVLINGLNKQARSKE 351
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A RL+ L P YNT+++
Sbjct: 352 ARRLLLKLFYDDSIPSAVTYNTLIE 376
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P++ T+N ++ LC+ L + +M + G P+ VTY L++ C N
Sbjct: 46 LKGLEPNLITFNMIINGLCRDGRLKETSEVLVEM-SRKGYVPDEVTYNTLVNGYCKEGNF 104
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L + + +G P+ Y +++
Sbjct: 105 HQALVLHAEMVRNGLSPNVVTYTSLI 130
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ +Y+ ++ + + L + +M + P+ VTY+ LI +C +
Sbjct: 219 MVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGK-SVLPDAVTYSSLIQGLCEQR 277
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + PD F Y T++ Y
Sbjct: 278 RLTEACDMFQEMLTIKLPPDEFTYTTLINAY 308
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G PN+VTY +ID C K EA + ++ G +P+ +N I+ G
Sbjct: 13 GCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62
>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFT++ ++ CLC+ + +M GI PN VTY ILI ++C ++ +M+
Sbjct: 367 PDIFTFSSIIDCLCRAQQFDDALGCFSEM-VEWGISPNAVTYNILIRSLCLIGDVGRSMK 425
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G PD F +N +++ +
Sbjct: 426 LLKDMRKDGISPDIFSFNALIQSF 449
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +L D+F+YN L+ C CK + V ++ G+ PNLVT+ LI C
Sbjct: 290 MVKDRLVSDVFSYNMLIDCFCKANVMNKAV-MVFKVMQDRGVSPNLVTFNTLISGHCKDG 348
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +A L+ L + G KPD F +++I+
Sbjct: 349 EVHKARELLQMLLELGLKPDIFTFSSII 376
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + P YN ++ L K SL Y QM A KP+ TY +LI VC +
Sbjct: 47 FLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSAD-NCKPDRFTYNMLIHGVCKIGVV 105
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+RLV + G+ + + Y ++ G+
Sbjct: 106 DEALRLVKQMEGFGYSANVYTYTNLIYGF 134
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+ PD FTYN L+ +CK + V QM G N+ TYT LI
Sbjct: 75 LKFQQMSADNCKPDRFTYNMLIHGVCKIGVVDEALRLVKQMEG-FGYSANVYTYTNLIYG 133
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
CN K + EA R+ + P+ +++ G
Sbjct: 134 FCNAKRVDEAFRVFETMKLRNVNPNEATIRSLVHG 168
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDIF++N L++ C+ + M ++LG+ PN TY L+ + EA
Sbjct: 435 ISPDIFSFNALIQSFCRMGKVEKAEKMFVSM-STLGLIPNNYTYGALVKALFELGRCDEA 493
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
++ ++ +G PD F N I
Sbjct: 494 KKMFFSMEVNGCVPDSFTCNLI 515
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++ T+N L+ CK + + + +KP++ T++ +ID +C +
Sbjct: 328 RGVSPNLVTFNTLISGHCKDGEVHKARELLQMLLELG-LKPDIFTFSSIIDCLCRAQQFD 386
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A+ S + + G P+ YN +++
Sbjct: 387 DALGCFSEMVEWGISPNAVTYNILIR 412
>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 376
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + A+
Sbjct: 196 PPTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHKVERAL 254
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L + ++ GFKPD ++N ++ G
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHG 278
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNVHVYNTLINGLAGASKFEDAIRVFREM-GTMHCPPTIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKG 243
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRALSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TYN L+ LCK +T+ N +++M G ++VTYT L+D +C +
Sbjct: 279 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR-GQPADVVTYTSLLDALCKNQ 337
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL +A L + + G +P + Y ++ G
Sbjct: 338 NLDKATALFMKMKERGIQPTMYTYTALIDG 367
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+I K + PD++T++ L+ LCK ++ +++ + QM G+ PN+ +Y I+I+ +C
Sbjct: 211 MILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQM----GVNPNVYSYNIMINGLCKC 266
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K + EAM L+ + PD YN+++ G
Sbjct: 267 KRVDEAMNLLREMLHKNMVPDTVTYNSLIDG 297
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TY L+ LCK ++L +M+ GI+P + TYT LID +C L+ A
Sbjct: 320 PADVVTYTSLLDALCKNQNLDKATALFMKMKER-GIQPTMYTYTALIDGLCKGGRLKNAQ 378
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L L G D + Y ++ G
Sbjct: 379 ELFQHLLVKGCCIDVWTYTVMISG 402
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P++ TYN L+ C L ++ + +M I P++ T++ILID +C K +
Sbjct: 179 REIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILK-NINPDVYTFSILIDALC--KEGK 235
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++ A+ G P+ + YN ++ G
Sbjct: 236 NAKQIFHAMVQMGVNPNVYSYNIMING 262
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+ L+K LC + + +F D++ A + N V+Y L++ +C T R A++
Sbjct: 78 PNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQ-AFQTNQVSYGTLLNGLCKTGETRCAIK 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D +P+ +Y+ I+ G
Sbjct: 137 LLRMIEDRSTRPNVVMYSAIIDG 159
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + P I +N ++ L K + TV + QM GI+ NLVT +ILI+ C+
Sbjct: 2 LLVRHTSP-IIEFNKILGSLVKLKYYLTVISLSKQMDVK-GIEQNLVTLSILINCFCHLG 59
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + L+ + G+ P+ + T+MKG
Sbjct: 60 QMAFSFSLLGKILKLGYXPNTITWTTLMKG 89
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P ++TY L+ LCK L + G ++ TYT++I +C
Sbjct: 352 RGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK-GCCIDVWTYTVMISGLCKEGMFD 410
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+ + S + D+G P+ + I++
Sbjct: 411 EALAIKSKMEDNGCIPNAVTFEIIIR 436
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y+ ++ LCK + + Y+ +M A I PN++TY LI C L A
Sbjct: 148 PNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAR-EIFPNVITYNTLICAFCLAGQLMGAFS 206
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + PD + ++ ++
Sbjct: 207 LLHEMILKNINPDVYTFSILI 227
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ LCK + +M +PN+V Y+ +ID +C K + EA L S
Sbjct: 117 SYGTLLNGLCKTGETRCAIKLL-RMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSE 175
Query: 72 LSDSGFKPDCFVYNTIM 88
+ P+ YNT++
Sbjct: 176 MDAREIFPNVITYNTLI 192
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ T + L+ C C + ++ + ++ LG PN +T+T L+ +C ++
Sbjct: 39 KGIEQNLVTLSILINCFCHLGQMAFSFSLLGKI-LKLGYXPNTITWTTLMKGLCLKGEVK 97
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + F+ + Y T++ G
Sbjct: 98 KLLHFHDKVVAQAFQTNQVSYGTLLNG 124
>gi|297849786|ref|XP_002892774.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338616|gb|EFH69033.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 883
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F Y L+ CK L DQM S G+ P+ YT LI C NL+EA
Sbjct: 759 PDVFYYTVLIDWQCKIGDLKEAKGIFDQMIES-GVDPDAAPYTALIAGCCKMGNLKEAKM 817
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +SG KPD Y T++ G+
Sbjct: 818 IFDLMIESGLKPDFVSYTTLIAGF 841
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TY L+K + +M+A +KP++ YT+LID C +L+
Sbjct: 727 REIVPDVVTYTVLLKN-------NPELDLTREMKA-FDVKPDVFYYTVLIDWQCKIGDLK 778
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + +SG PD Y ++ G
Sbjct: 779 EAKGIFDQMIESGVDPDAAPYTALIAG 805
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR----------------------- 37
L+ K++ PD+FTY ++ C+ L Y M+
Sbjct: 626 LVTKEIIPDLFTYTIMINTYCRLNELKQAYALFQDMKRRDVKPDVVTYTVLLNSNPELDV 685
Query: 38 ----ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +KP++V YTI+I+ C ++++A L + PD Y ++K
Sbjct: 686 KREMEAFDVKPDVVLYTIMINRYCQLNDVKKAYALFKDMKRREIVPDVVTYTVLLK 741
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ Y L+ C + ++ + +M S G P++V Y +L + +
Sbjct: 425 KGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGS-GKTPDIVIYNVLAGGLARNGLSQ 483
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + + D G KP +N +++G
Sbjct: 484 EALETLKLMEDRGVKPTYVTHNMVIEG 510
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 3 FKQL--PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
F++L P D YN L K + +M GI P+++ YT LI C
Sbjct: 387 FRELNIPLDRVCYNVAFDALGKLGKVEEAIELFREMTGK-GIAPDVINYTTLIGGCCLQG 445
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A L+ + SG PD +YN + G
Sbjct: 446 KCSDAFDLMIEMDGSGKTPDIVIYNVLAGG 475
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD Y L+ CK +L D M S G+KP+ V+YT LI
Sbjct: 787 MIESGVDPDAAPYTALIAGCCKMGNLKEAKMIFDLMIES-GLKPDFVSYTTLIAGFRRNG 845
Query: 61 NLREAMRLVSALSDSGFKP 79
+R+A L+ + + G KP
Sbjct: 846 FVRKAFTLMKEMLEKGIKP 864
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ Y L+ C+ ++ F ++ + I P+L TYTI+I+ C L++A
Sbjct: 596 VEPEKSMYGKLIGAWCRVNNVRKARQFF-EILVTKEIIPDLFTYTIMINTYCRLNELKQA 654
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + KPD Y ++
Sbjct: 655 YALFQDMKRRDVKPDVVTYTVLL 677
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+++C C+ + + Y+ ++ R L I + V Y + D + + EA+ L ++
Sbjct: 367 ILQCCCQMGNFSGAYDLFEEFR-ELNIPLDRVCYNVAFDALGKLGKVEEAIELFREMTGK 425
Query: 76 GFKPDCFVYNTIMKG 90
G PD Y T++ G
Sbjct: 426 GIAPDVINYTTLIGG 440
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR--------ASLGIKPNLVTYTILIDNVCNT 59
P +F NF ++ LC + + Y + +R + LGI Y ++ +CN
Sbjct: 251 PCVFYLNF-IEGLCLNQMASMAYLLLQPLREVNILVDMSDLGI-----AYRRVVRGLCNE 304
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + + G PD +VY+ I++G+
Sbjct: 305 MRIEDAEKAFLDMEEHGIDPDVYVYSAIIEGH 336
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LP ++ F C K ++ + +D+M LG++P Y LI C N+R+A
Sbjct: 562 LPKSVYFTLFTSLCAEK-NHISKAQDLLDRM-WELGVEPEKSMYGKLIGAWCRVNNVRKA 619
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L PD F Y ++ Y
Sbjct: 620 RQFFEILVTKEIIPDLFTYTIMINTY 645
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ +YN L+K LCK ++ +++M + GIKPN +Y +LI+ +C +R+A+ L
Sbjct: 522 DVISYNGLIKALCKEGNVDRSMALLEEM-VTKGIKPNNFSYNMLINELCKAGKVRDALEL 580
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G PD YNT++ G
Sbjct: 581 SKEMLNQGLTPDIVTYNTLING 602
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ F+YN L+ LCK + +M + G+ P++VTY LI+ +C
Sbjct: 549 MVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEM-LNQGLTPDIVTYNTLINGLCKVG 607
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L+ L + PD YN ++
Sbjct: 608 WTHAALNLLEKLPNENVHPDIVTYNILI 635
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PPD+ TY+ L+ LCK + +D+M G PN+VTY+ L+ + C
Sbjct: 342 KGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEK-GCAPNIVTYSTLLHSFCRNGMWD 400
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A ++ + GF + YN I+
Sbjct: 401 DARAMLDQMLAKGFSMNSQGYNGII 425
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN ++ LCK L V +M+ S G KP++ TY +I ++CN + EA + L
Sbjct: 421 YNGIIYALCKDGKLDQATRLVQEMK-SQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNL 479
Query: 73 SDSGFKPDCFVYNTIM 88
+ G + YNT++
Sbjct: 480 IEEGVVANGITYNTLI 495
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ LCK N ++++ + + P++VTY ILI C + L +A
Sbjct: 589 LTPDIVTYNTLINGLCKVGWTHAALNLLEKL-PNENVHPDIVTYNILISWHCKVRLLDDA 647
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ G P+ + +++ +
Sbjct: 648 AMLLDKAISGGIVPNERTWGMMVQNF 673
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 30/114 (26%)
Query: 8 PDIFTYNFLVKCLCKCRS------------------LTTVY------------NFVDQMR 37
P + TY FL++ LC+ R L TV + +M
Sbjct: 280 PSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMM 339
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S G P++ TY+IL+ +C A+R++ + + G P+ Y+T++ +
Sbjct: 340 GSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSF 393
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ T+N LV LC + VD+M G P++VTY L+ +C T+ EA +
Sbjct: 246 DVNTFNDLVLGLCGLGRVREAARLVDRMMTQ-GCMPSVVTYGFLLQGLCRTRQADEACAM 304
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ L + + + NT+++G
Sbjct: 305 LGRLPEV----NVVMLNTVIRG 322
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LC L + + G+ N +TY LI + +E +R
Sbjct: 451 PDICTYNTMIYHLCN-NDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLR 509
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S + G + D YN ++K
Sbjct: 510 LASEMLLHGCQLDVISYNGLIKA 532
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y ++ L + +D+M +G ++ T+ L+ +C +REA R
Sbjct: 210 PDAVLYQTVIHALVAQGGVAEAAMLLDEMLL-MGCAADVNTFNDLVLGLCGLGRVREAAR 268
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + G P Y +++G
Sbjct: 269 LVDRMMTQGCMPSVVTYGFLLQG 291
>gi|399107196|gb|AFP20362.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + B GFKPD Y+ ++ G
Sbjct: 73 AIRLLHRMIBEGFKPDVVTYSVVVNG 98
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 80 MIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IBEGFKPDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 133
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+ YN L+ C + F D+M S I P LVTY +LID +C
Sbjct: 517 MICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRS-EISPTLVTYNVLIDGLCKKG 575
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA ++ ++ SG PD YN+++ GY
Sbjct: 576 KLTEAEDFLTQITSSGHSPDVITYNSLISGY 606
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P + TYN L+ LCK LT +F+ Q+ +S G P+++TY LI N
Sbjct: 552 MMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSS-GHSPDVITYNSLISGYANAG 610
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ + + L + + G KP Y+ ++ G
Sbjct: 611 NVSKCLGLYETMKNLGIKPTVRTYHPLISG 640
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L I TYN L+ CK L + ++M+ + PN++T+ L+ +C + ++EA
Sbjct: 242 LVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEK-SVAPNIITFNSLLSGLCKMRKMKEA 300
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + +GF PD + Y+ + G
Sbjct: 301 RSLLKEMEVNGFMPDGYTYSILFDG 325
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D YN V C+ + +++M S G++PN +T+ LID C+ K + +A
Sbjct: 382 LVADEVIYNTFVNGYCRIGDMNKAILTIERME-SFGLRPNSITFNSLIDKFCDMKEMDKA 440
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
V +++ G P YNT++ GY
Sbjct: 441 EEWVKKMAEKGVTPSVETYNTLIDGY 466
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F Y ++ K ++L F+D MR G++PN+ Y +LI +C K +R+A ++
Sbjct: 175 DTFMYAKAIQAAVKLQNLKMGMEFLDSMRKR-GVRPNVFIYNVLIGGLCREKRIRDAEKM 233
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + YNT++ GY
Sbjct: 234 FDEMCNINLVGSIVTYNTLIDGY 256
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F YN L+ LC+ + + D+M ++ + ++VTY LID C L A +
Sbjct: 209 PNVFIYNVLIGGLCREKRIRDAEKMFDEM-CNINLVGSIVTYNTLIDGYCKVGELDAAFK 267
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + P+ +N+++ G
Sbjct: 268 MRERMKEKSVAPNIITFNSLLSG 290
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + TYN L+ K + + ++QM +G+KPN+V+Y LI+ +C +
Sbjct: 450 KGVTPSVETYNTLIDGYGKLCTFDRCFQILEQME-EIGVKPNVVSYGSLINCLCKDGKIL 508
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + G P+ VYN ++ G
Sbjct: 509 EAEIVLRDMICRGVLPNAQVYNMLIDG 535
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY+ L L +C +Q GI+ N T +IL++ +C + +A
Sbjct: 314 PDGYTYSILFDGLLRCDDGNGAMELYEQATEK-GIRINNYTGSILLNGLCKQGKVEKAEE 372
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +++G D +YNT + GY
Sbjct: 373 ILKKFTENGLVADEVIYNTFVNGY 396
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I T+N L+ LCK R + + + +M + G P+ TY+IL D + +
Sbjct: 275 KSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVN-GFMPDGYTYSILFDGLLRCDDGN 333
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM L ++ G + + + + ++ G
Sbjct: 334 GAMELYEQATEKGIRINNYTGSILLNG 360
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+N L+ C + + +V +M A G+ P++ TY LID
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKM-AEKGVTPSVETYNTLIDGYGKLCTFDRC 475
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+++ + + G KP+ Y +++
Sbjct: 476 FQILEQMEEIGVKPNVVSYGSLI 498
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD TYN L+ + L+ + + V+ M+A + P TY IL+ C+ K
Sbjct: 691 MLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAK-ELAPKADTYDILVKGHCDLK 749
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + ++ F P+ + N + G
Sbjct: 750 DFSGAYVWYREMVENNFLPNASICNELTAG 779
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + TY+ L+ C + V ++M + + P+ V Y +I N ++A
Sbjct: 627 IKPTVRTYHPLISG-CSKEGIELVEKLYNEM-LQMNLLPDRVVYNAMIHCYAEIGNTQKA 684
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + D G PD YN+++ G+
Sbjct: 685 YSLHQGMLDQGIHPDKMTYNSLILGH 710
>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
Length = 503
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PP + TY +++ CK R+ VY +D M S G PN++TYT+++ ++ +
Sbjct: 251 RGFPPIVITYTAVLEAYCKQRNFRRVYEVLDSM-GSQGCHPNVITYTMIMTSLTKCERFE 309
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ + + SG KPD YN ++
Sbjct: 310 EALSVSDRMKSSGCKPDTLFYNALI 334
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD +T+N V C R + +++M+ + G P ++TYT +++ C +
Sbjct: 213 MLSPHIAPDAYTFNIFVHGWCSVRRIDEALWTIEEMK-TRGFPPIVITYTAVLEAYCKQR 271
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N R ++ ++ G P+ Y IM
Sbjct: 272 NFRRVYEVLDSMGSQGCHPNVITYTMIM 299
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ LCK + + + S I P+ T+ I + C+ + + EA+ +
Sbjct: 190 TMNVLLDALCKEKKVELAREVFVML--SPHIAPDAYTFNIFVHGWCSVRRIDEALWTIEE 247
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF P Y +++ Y
Sbjct: 248 MKTRGFPPIVITYTAVLEAY 267
>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
Length = 506
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PP + TY +++ CK R+ VY +D M +S G PN++TYT+++ ++ +
Sbjct: 254 RGFPPIVITYTAVLEAYCKQRNFRRVYEILDSM-SSQGCHPNVITYTMIMTSLTKCERFE 312
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ + + SG KPD YN ++
Sbjct: 313 EALSVSDRMKSSGCKPDTLFYNALI 337
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD +T+N V C R + +++M+ + G P ++TYT +++ C +
Sbjct: 216 MLSPHIAPDAYTFNIFVHGWCSVRRIDEAMWTIEEMK-NRGFPPIVITYTAVLEAYCKQR 274
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N R ++ ++S G P+ Y IM
Sbjct: 275 NFRRVYEILDSMSSQGCHPNVITYTMIM 302
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ LCK R + + S I P+ T+ I + C+ + + EAM +
Sbjct: 193 TMNVLLDALCKERKVELAREVFVML--SPHIAPDAYTFNIFVHGWCSVRRIDEAMWTIEE 250
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ + GF P Y +++ Y
Sbjct: 251 MKNRGFPPIVITYTAVLEAY 270
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L+ LCK S+ + D+MR LG+ PN+ YT LID C +L +A
Sbjct: 510 LQPNVVTYCALIDGLCKAGSIYEAISHFDKMR-ELGLDPNVQVYTTLIDGFCKIGSLSKA 568
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L++ + D G D VY +++ G+
Sbjct: 569 VHLMNEMVDKGMSLDKVVYTSLIDGH 594
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+ C K + Y++ +M+ LG+ N+VT + +D C +REAM+L
Sbjct: 268 DVVTYNALINCFSKFGWIEKAYSYFGEMK-RLGVMANVVTLSTFVDAFCKEGLVREAMKL 326
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ F Y +++ G
Sbjct: 327 FAQMRVRGMMPNEFTYTSLVDG 348
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F+ LP P++FT+N ++ LCK L +M+A +G P++VTY LID
Sbjct: 190 LFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKA-MGCSPDVVTYNSLIDGYGKCG 248
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L E LVS + SG D YN ++ +
Sbjct: 249 ELEEVELLVSEMRKSGCAADVVTYNALINCF 279
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY LV CK L +D+M G+ PN+VTYT+++D +C + A
Sbjct: 337 PNEFTYTSLVDGTCKAGRLDDAIVLLDEM-VHQGLVPNVVTYTVMVDGLCKEGKVAVADD 395
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++S + +G K + +Y T++ G+
Sbjct: 396 VLSLMERAGVKANELLYTTLIHGH 419
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ Y L+ LCK + L + + +M G++PN V YT ++D
Sbjct: 438 KGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMD-DCGLRPNTVIYTTIMDAFFKAGKES 496
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ + DSG +P+ Y ++ G
Sbjct: 497 EAVALLHKIPDSGLQPNVVTYCALIDG 523
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP+ T N ++ L + R V + + A PN+ T+ I+ID +C L E
Sbjct: 163 RVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPA-----PNVFTFNIVIDFLCKQGELVE 217
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + G PD YN+++ GY
Sbjct: 218 ARALFVRMKAMGCSPDVVTYNSLIDGY 244
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G++PN+VTY LID +C ++ EA+ + + G P+ VY T++ G+
Sbjct: 509 GLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGF 559
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TY +V LCK + + + M + G+K N + YT LI K
Sbjct: 365 MVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERA-GVKANELLYTTLIHGHFMNK 423
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A+ L++ + + G + D +Y T++ G
Sbjct: 424 NSERALDLLNEMKNKGMELDVSLYGTLIWG 453
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ T + V CK + QMR G+ PN TYT L+D C L +A+ L
Sbjct: 303 NVVTLSTFVDAFCKEGLVREAMKLFAQMRVR-GMMPNEFTYTSLVDGTCKAGRLDDAIVL 361
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ Y ++ G
Sbjct: 362 LDEMVHQGLVPNVVTYTVMVDG 383
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y L+ CK SL+ + +++M G+ + V YT LID +L+ A
Sbjct: 545 LDPNVQVYTTLIDGFCKIGSLSKAVHLMNEM-VDKGMSLDKVVYTSLIDGHMKQGDLQGA 603
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + ++G + D + Y + G+
Sbjct: 604 FALKAKMIETGLQLDLYCYTCFISGF 629
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TYN L+ LCK + D + G+ N VTY +ID C + NL
Sbjct: 685 KGISPNIITYNALINGLCKAGEIERARELFDGIPGK-GLAHNAVTYATIIDGYCKSGNLS 743
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A RL ++ G PD FVY+ ++ G
Sbjct: 744 KAFRLFDEMTLKGVPPDSFVYSALIDG 770
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTYN ++ CK + + + M GI PN++TY LI+ +C +
Sbjct: 650 KGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYM-CQKGISPNIITYNALINGLCKAGEIE 708
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + G + Y TI+ GY
Sbjct: 709 RARELFDGIPGKGLAHNAVTYATIIDGY 736
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P +T ++ LC+ S+ + M SLG+KPN V YT LI +EA
Sbjct: 442 LVPTAYTCGMIINGLCRHGSIEDASRVFEIM-VSLGVKPNAVIYTTLIKGHVQEGRFQEA 500
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+R++ + G +PD YN+++ G
Sbjct: 501 VRILKVMDKKGVQPDVLCYNSVIIG 525
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ YN ++ LCK R + +++ +M G+KPN+ TY LI C + ++
Sbjct: 510 KGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEM-IERGLKPNVYTYGALIHGYCKSGEMQ 568
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A R + G P+ V ++ GY
Sbjct: 569 VADRYFKEMLGCGIAPNDVVCTALIDGY 596
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D+FTY+ L+ K + T +++M S G+KP V YT LID +
Sbjct: 300 KGLVADVFTYSILIDGFGKQKRCTEAKLMLEEM-FSKGLKPGHVAYTALIDGFMRQGDSG 358
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA R+ + G K + F YN ++KG
Sbjct: 359 EAFRVKEEMLARGVKLNLFTYNALVKG 385
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD TYN +++ K ++ + V + + +M+ S + P T ++I+ +C
Sbjct: 402 MIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKS-NLVPTAYTCGMIINGLCRHG 460
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +A R+ + G KP+ +Y T++KG+
Sbjct: 461 SIEDASRVFEIMVSLGVKPNAVIYTTLIKGH 491
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 36/126 (28%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN-- 58
+I + L P+++TY L+ CK + + +M GI PN V T LID C
Sbjct: 542 MIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGC-GIAPNDVVCTALIDGYCKEG 600
Query: 59 ---------------------------------TKNLREAMRLVSALSDSGFKPDCFVYN 85
L+ AM L+S + G PD F YN
Sbjct: 601 STTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYN 660
Query: 86 TIMKGY 91
+I+ G+
Sbjct: 661 SIISGF 666
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N L+ CK + ++ M +KP+ VTYTILID C T L+EA +
Sbjct: 797 SLNALMDGFCKSGKVIEANQLLEDM-VDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVD 855
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ P+ Y ++ GY
Sbjct: 856 MQKRNLMPNALTYTALLSGY 875
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P Y L+ + + ++M A G+K NL TY L+ VC ++
Sbjct: 335 KGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLAR-GVKLNLFTYNALVKGVCKFGDME 393
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L++ + G KPD YN +++GY
Sbjct: 394 KADALLNEMIMVGIKPDTQTYNNMIEGY 421
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TYN ++ LC+ + + M G+ ++ TY+ILID K
Sbjct: 265 KGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKK-GLVADVFTYSILIDGFGKQKRCT 323
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G KP Y ++ G+
Sbjct: 324 EAKLMLEEMFSKGLKPGHVAYTALIDGF 351
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++TY L+ + + + +M G P+LVTY ++I +C + EA L
Sbjct: 235 DVYTYTHLINAHFRAGNAKEGKRLLFEMEEK-GCSPSLVTYNVVIGGLCRAGEVDEAFEL 293
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ G D F Y+ ++ G+
Sbjct: 294 KKLMDKKGLVADVFTYSILIDGF 316
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + TY ++ CK +L+ + D+M G+ P+ Y+ LID N
Sbjct: 720 KGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLK-GVPPDSFVYSALIDGCRKEGNTE 778
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L GF + N +M G+
Sbjct: 779 KALSLFLESVQKGFASTSSL-NALMDGF 805
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ TY+ L+ LC+ R + F +M+ LG+KPN +TYT +I + N+ EA
Sbjct: 506 PPNQITYSILINGLCRVRKFNKAFVFWQEMQ-KLGLKPNTITYTTMISGLAKAGNILEAS 564
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L S +G PD YN +++G
Sbjct: 565 GLFSRFKANGGIPDSASYNAMIEG 588
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC+ L D M + G+ PN++T I+ID +C + L EA
Sbjct: 157 PNVPTYNILIDMLCREGKLNAALEIRDDMERA-GLFPNVLTVNIMIDRLCKAQKLEEACS 215
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D P+ +++++ G
Sbjct: 216 IFEGMDDKVCTPNAVTFSSLIDG 238
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L P+++T+N L+ L K + M+ L PN +TY+ILI+ +C +
Sbjct: 465 LMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMK-DLKCPPNQITYSILINGLCRVR 523
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + G KP+ Y T++ G
Sbjct: 524 KFNKAFVFWQEMQKLGLKPNTITYTTMISG 553
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN ++ CK + Y +++M+ G P +VTY +ID + L EA L
Sbjct: 368 DTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK-GHPPTVVTYGSVIDGLAKIDRLDEAYML 426
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+G K + VY++++ G+
Sbjct: 427 FEEAKSNGIKLNVVVYSSLIDGF 449
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + TY ++ L K L Y ++ +++ GIK N+V Y+ LID + EA
Sbjct: 401 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSN-GIKLNVVVYSSLIDGFGKVGRIDEAY 459
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
++ L G P+ + +N ++
Sbjct: 460 LIMEELMQKGLTPNVYTWNCLL 481
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ CL K R + ++M+ PN+ TY ILID +C L A+
Sbjct: 123 PSVIAYNCILTCLGKKRRVEEALRIFEEMKRD--AVPNVPTYNILIDMLCREGKLNAALE 180
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +G P+ N ++
Sbjct: 181 IRDDMERAGLFPNVLTVNIMI 201
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T N ++ LCK + L + + M + PN VT++ LID + + +A
Sbjct: 190 LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKV-CTPNAVTFSSLIDGLGKCGRVDDA 248
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + D G P VY ++++ +
Sbjct: 249 YSLYEKMLDCGHVPGAIVYTSLIRSF 274
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV----------CNTKNLREA 65
LV K R L ++ + MR +P YTILI V C L EA
Sbjct: 16 LVANCVKSRKLREAFDIIQTMR-KFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEA 74
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L L + P + YNT++ GY
Sbjct: 75 VELFEQLEQNRKVPCAYAYNTMIMGY 100
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLC-KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD +TYN L++ LC + R+ + D R G P++VTYTIL++ C ++AM
Sbjct: 164 PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRR--GCLPDVVTYTILLEATCKRSGYKQAM 221
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + D G PD YN ++ G
Sbjct: 222 KLLDEMHDKGCAPDIVTYNVVLNG 245
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ CK +D+M G P++VTY ++++ +C + +AM
Sbjct: 199 PDVVTYTILLEATCKRSGYKQAMKLLDEMHDK-GCAPDIVTYNVVLNGICQEGRVEDAME 257
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L G +P+ YN ++KG
Sbjct: 258 FLKNLPSYGCEPNTVSYNIVLKG 280
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP++ T+N L+ LC+ + ++QM G PN ++Y L+ C K +
Sbjct: 300 KGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQM-PQYGCTPNSLSYNPLLHAFCKQKKIH 358
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM V + G PD YNT++
Sbjct: 359 KAMEFVELMVSRGCYPDIVSYNTLL 383
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+ +Q+P P+ +YN L+ CK + + FV+ M S G P++V+Y L+ +
Sbjct: 328 VLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELM-VSRGCYPDIVSYNTLLTAL 386
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A+ L+ L D G P YNT++ G
Sbjct: 387 CRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDG 420
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + +YN ++ L K +D+M S G++P+++TY+ + +C +
Sbjct: 405 KGCSPVLISYNTVIDGLTKAGKTKEALELLDEM-TSKGLQPDIITYSTIASGLCREDRIE 463
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R + D G +P +YN I+ G
Sbjct: 464 EAVRTFCKVQDMGIRPTAALYNAILLG 490
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN ++ +C+ + F+ + S G +PN V+Y I++ + +
Sbjct: 230 KGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNL-PSYGCEPNTVSYNIVLKGLFTAERWE 288
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A +L+ ++ G P+ +N ++
Sbjct: 289 DAEKLMEEMAHKGCPPNVVTFNMLI 313
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 3 FKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
K LP P+ +YN ++K L +++M A G PN+VT+ +LI +C
Sbjct: 259 LKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEM-AHKGCPPNVVTFNMLISFLC 317
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ AM ++ + G P+ YN ++ +
Sbjct: 318 RRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAF 351
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN +V C L V A + ++P+ TY LI +C A+
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLV----ADMPVEPDAYTYNTLIRGLCGRGRTSNALA 187
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G PD Y +++
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEA 210
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 19 CLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFK 78
C + L D R P+++ Y ++ C L A RLV+ D +
Sbjct: 107 CAALIKKLCASGRTADARRVLAASGPDVMVYNAMVAGYCGAGQLDAARRLVA---DMPVE 163
Query: 79 PDCFVYNTIMKG 90
PD + YNT+++G
Sbjct: 164 PDAYTYNTLIRG 175
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ FTY LV C LT F+++M S G++PN+VTY+ +D +C
Sbjct: 259 MVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKM-CSNGVEPNVVTYSSFMDYLCKNG 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ ++ G KPD Y++++ GY
Sbjct: 318 RCTEARKIFDSMVKRGLKPDITTYSSLLHGY 348
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ Y+ ++ LCK +++ D+M + G+ PN TYT L+ C++
Sbjct: 224 MLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKN-GVTPNCFTYTSLVHGFCSSG 282
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA++ + + +G +P+ Y++ M
Sbjct: 283 QLTEAIKFLEKMCSNGVEPNVVTYSSFM 310
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD + +N L+ K + +MR G+KPN VTY+ LI+ C
Sbjct: 364 MVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQ-GLKPNCVTYSTLINGYCKIT 422
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L + +G P+ YN +++G
Sbjct: 423 RMENALALFQEMVSNGVSPNFITYNIMLQG 452
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PDI TY+ L+ +L ++ D M S ++P+ + LI
Sbjct: 329 MVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQS-DMQPDHYVFNTLIYASAKQG 387
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EAM + S + G KP+C Y+T++ GY
Sbjct: 388 KVDEAMLVFSKMRQQGLKPNCVTYSTLINGY 418
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y+ ++ L K Y +M I PN+V Y+ +I +C + + +AM
Sbjct: 196 PNVVSYSTVIDGLLKGGDPDKAYATYREMLDRR-ILPNVVIYSSIIAALCKGQAMDKAME 254
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G P+CF Y +++ G+
Sbjct: 255 VHDRMVKNGVTPNCFTYTSLVHGF 278
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P IF N L+K LC + + V + L PN+ ++TI++ +C+ +E
Sbjct: 122 RVEPIIF--NPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQE 179
Query: 65 AMRLVSALSDSGFK--PDCFVYNTIMKG 90
A+ L+ ++D G P+ Y+T++ G
Sbjct: 180 ALELLHMMADDGGGCLPNVVSYSTVIDG 207
>gi|260780558|gb|ACX50825.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 176
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + N+ +
Sbjct: 4 QVPPHAFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGNVED 60
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD ++ ++ G
Sbjct: 61 AIRLLHRMIDEGFKPDVVTFSVVVNG 86
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T++ +V LCK + ++ + + G+ N + Y+ LID +
Sbjct: 68 MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFN-GLAINSMFYSSLIDGLGKAG 126
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 127 RIDEAERLFEEMSEKGCTRDSYCYNALIDAF 157
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K ++ + +M G KP++VT++++++ +C
Sbjct: 33 MIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRM-IDEGFKPDVVTFSVVVNGLCKNG 91
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 92 RVEEALDYFQTCQFNGLAINSMFYSSLIDG 121
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+I TYN L+ LCK L D++ G+ PN+VTY ILID C +
Sbjct: 618 MVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLK-GLIPNVVTYNILIDGYCKSG 676
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ REA+ L + G P Y++++ G+
Sbjct: 677 SPREALDLRGKMLKEGISPSIITYSSLINGF 707
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K L P++ TYN L+ CK S + +M GI P+++TY+ LI+ C
Sbjct: 653 LHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKE-GISPSIITYSSLINGFCKQS 711
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ EAM+L++ + S ++ +++G
Sbjct: 712 DVEEAMKLLNEMKASNVDQTIATFSKLVEG 741
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD ++Y LV C+ + +N DQM GI+P +VTY L+ +C + ++
Sbjct: 237 DLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRK-GIEPTVVTYNTLLKGLCRFGDYKD 295
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL + G P+ Y T++ G
Sbjct: 296 ALRLWHLMLQRGVTPNEVGYCTLLDG 321
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + Y L+ CK + D+M +G+K NL LI+ C + E RL
Sbjct: 171 DEYAYGALIDGYCKVGKMGDAIRVRDEM-LKVGLKMNLFVCNSLINGYCKNGQVHEGERL 229
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + KPD + Y T++ GY
Sbjct: 230 LMCMRKLDLKPDSYSYCTLVDGY 252
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT +V CK + FV +M LG + N V+Y L+D + ++ A
Sbjct: 64 PDVFTCAIMVNAYCKAGKVERAVEFVREME-KLGFELNAVSYNSLVDGYVSLGDIEGAKG 122
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +S+ G + ++KGY
Sbjct: 123 VLKFMSEKGVMRNKVTLTLLIKGY 146
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + I+ +N ++ LCK + +M LG KP+ +TY L D C
Sbjct: 338 ILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRME-ELGCKPDGITYRTLSDGYCKVG 396
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ EA ++ + P +YN+++ G
Sbjct: 397 NVEEAFKIKEKMEKEEIFPSIEMYNSLIVG 426
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T L+K CK + + +M G+ + Y LID C + +A+R+
Sbjct: 138 TLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDE 197
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G K + FV N+++ GY
Sbjct: 198 MLKVGLKMNLFVCNSLINGY 217
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I YN L+ L + ++ + + + +M + G+ PN+VTY LI C+ L +A
Sbjct: 415 PSIEMYNSLIVGLFTSKKISKLIDLLAEMD-TRGLSPNVVTYGALIAGWCDQGRLDKAFS 473
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ GF P+ + + I+
Sbjct: 474 AYFEMIGKGFAPNVIICSKIV 494
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
PN V Y I + +C + + +A R LS F PD F Y T++ G+
Sbjct: 555 PNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGF 602
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + + N L+ L K + DQMR L I P++ T I+++ C + A+
Sbjct: 29 PSLRSCNSLLSNLVKRGESYSAVLVYDQMR-RLDIVPDVFTCAIMVNAYCKAGKVERAVE 87
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V + GF+ + YN+++ GY
Sbjct: 88 FVREMEKLGFELNAVSYNSLVDGY 111
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK--------------------------CRSLTTVYNFVD 34
++ K + P + TYN L+K LC+ C L ++ D
Sbjct: 268 MLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGD 327
Query: 35 QMRA--------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
RA + GI ++ + +I+ +C + A + + G KPD Y T
Sbjct: 328 FSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRT 387
Query: 87 IMKGY 91
+ GY
Sbjct: 388 LSDGY 392
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L ++F N L+ CK + + MR L +KP+ +Y L+D C +A
Sbjct: 203 LKMNLFVCNSLINGYCKNGQVHEGERLLMCMR-KLDLKPDSYSYCTLVDGYCRDGLSSKA 261
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G +P YNT++KG
Sbjct: 262 FNVCDQMLRKGIEPTVVTYNTLLKG 286
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ L KC +MRA +G+ P+++TY L++ C NL+EA+
Sbjct: 341 PTVVTYNAIIHGLLKCEQAEAAQVKFAEMRA-MGLLPDVITYNSLLNRYCKAGNLKEALW 399
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ L +G P YNT++ GY
Sbjct: 400 LLGDLRRAGLAPTVLTYNTLIDGY 423
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD F YN + S + + M GI P+ VTY ++ID +C T
Sbjct: 474 MLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLK-GIYPDTVTYNVIIDGLCKTG 532
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL++A RL + + G +PDC Y ++ +
Sbjct: 533 NLKDAKRLKTKMVSDGLQPDCITYTCLIHAH 563
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ CK +L + +R + G+ P ++TY LID C +L EA
Sbjct: 374 LLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRA-GLAPTVLTYNTLIDGYCRLGDLAEA 432
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + G PD Y +M G
Sbjct: 433 RRLKEEMVEQGCFPDVCTYTILMNG 457
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TYN ++ LCK +L +M S G++P+ +TYT LI C
Sbjct: 509 MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKM-VSDGLQPDCITYTCLIHAHCERG 567
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
LREA +L++ + G +P Y ++
Sbjct: 568 LLREARKLLNGMVSDGLQPSVVTYTILV 595
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TYN L+ LC + +M G+ PN TYT+LID C N +A
Sbjct: 619 IEPNEITYNVLIHALCMTGRTPLAFRHFHEM-LERGLAPNKYTYTLLIDGNCREGNWADA 677
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+RL + +G PD +N + KG+
Sbjct: 678 IRLYFEMHQNGIPPDYCTHNALFKGF 703
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TYN L+ C+ L ++M G P++ TYTIL++ +NL A
Sbjct: 409 LAPTVLTYNTLIDGYCRLGDLAEARRLKEEM-VEQGCFPDVCTYTILMNGSRKVRNLAMA 467
Query: 66 MRLVSALSDSGFKPDCFVYNT 86
+ G +PDCF YNT
Sbjct: 468 REFFDEMLSKGLQPDCFAYNT 488
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TY LV C+ +L + Y + +M +GI+PN +TY +LI +C T A
Sbjct: 584 LQPSVVTYTILVHTCCRRGNLYSAYGWFRKM-LDVGIEPNEITYNVLIHALCMTGRTPLA 642
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R + + G P+ + Y ++ G
Sbjct: 643 FRHFHEMLERGLAPNKYTYTLLIDG 667
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ C+ L ++ M S G++P++VTYTIL+ C NL A
Sbjct: 549 LQPDCITYTCLIHAHCERGLLREARKLLNGM-VSDGLQPSVVTYTILVHTCCRRGNLYSA 607
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ D G +P+ YN ++
Sbjct: 608 YGWFRKMLDVGIEPNEITYNVLI 630
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PDI YN L+ CK + D M S I PN +TY ILI+ C+ ++
Sbjct: 240 RNIKPDIVAYNTLIDGFCKVGEMEKASELWDGM-ISRKIFPNHITYGILINAYCSVGHVS 298
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL + + G KP NT++KGY
Sbjct: 299 EAFRLWDVMIEKGIKPTLVTCNTVIKGY 326
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN ++ LCK + LT D+M G P+ T+T LI C N+ +A+ L
Sbjct: 175 DVIAYNTILNGLCKEKMLTDADKLFDEM-VERGALPDFYTFTTLIHGHCQDGNMTKALSL 233
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ KPD YNT++ G+
Sbjct: 234 FGTMTQRNIKPDIVAYNTLIDGF 256
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P +FTYN ++ LCK + +M ++G+ P+ TY L+ C N
Sbjct: 30 KGLKPSLFTYNAIINGLCKKGRYARAKGILIEM-LNIGLSPDTTTYNTLLVESCRRDNFS 88
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA + + G PD ++++M
Sbjct: 89 EAKEIFGEMLRQGVVPDLVSFSSLM 113
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ +++ L+ + R L + M+ G+ P+ V YT+L+ C
Sbjct: 97 MLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMK-KFGLVPDNVIYTVLMHGYCRNG 155
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ EA+++ + + G D YNTI+ G
Sbjct: 156 NMLEALKIRDEMLEQGCVLDVIAYNTILNG 185
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ C+ L + ++ M A G+KP+L TY +I+ +C A ++
Sbjct: 1 MVTYNTLIGAYCREGLLEEAFEIMNSM-ADKGLKPSLFTYNAIINGLCKKGRYARAKGIL 59
Query: 70 SALSDSGFKPDCFVYNTIM 88
+ + G PD YNT++
Sbjct: 60 IEMLNIGLSPDTTTYNTLL 78
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P+ TY L+ C ++ + D M GIKP LVT +I C +
Sbjct: 272 MISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVM-IEKGIKPTLVTCNTVIKGYCRSG 330
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +A + + G PD YNT++
Sbjct: 331 DSSKADEFLGRMIAKGVAPDHISYNTLI 358
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 46 LVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+VTY LI C L EA ++++++D G KP F YN I+ G
Sbjct: 1 MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIING 45
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ C+ + + +M G+ P+LV+++ L+ ++L +A
Sbjct: 67 LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQ-GVVPDLVSFSSLMAVFSRNRHLDQA 125
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD +Y +M GY
Sbjct: 126 LVYFRDMKKFGLVPDNVIYTVLMHGY 151
>gi|341605803|gb|AEK83004.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605805|gb|AEK83005.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605823|gb|AEK83014.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTYXVVVNG 96
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYXVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY ++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYXVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCN 58
++ + PD+ TYN L+ LCK R L N VD +A L G PN++TY ILI++ C
Sbjct: 487 MLSHGITPDVITYNTLLNGLCKARKLD---NVVDTFKAMLEKGCTPNIITYNILIESFCK 543
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + EAM L + G PD T++ G
Sbjct: 544 DRKVSEAMELFKEMKTRGLTPDIVTLCTLICG 575
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+TYN +V LCK L+ ++ A G P++ T+ LID C +N+ +A+
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAK-GCIPDIFTFNTLIDGYCKQRNMDKAIE 482
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G PD YNT++ G
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNG 505
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N L+ LCK ++ ++ G+ PNL T+ I I +C + EA R
Sbjct: 214 PDILTFNKLIHVLCKKGNVQESEKLFSKVMKR-GVCPNLFTFNIFIQGLCRKGAIDEAAR 272
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G PD YNT++ G+
Sbjct: 273 LLESIVSEGLTPDVISYNTLICGF 296
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K PDIFT+N L+ CK R++ +D M S GI P+++TY L++ +C +
Sbjct: 453 IAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM-LSHGITPDVITYNTLLNGLCKARK 511
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + A+ + G P+ YN +++ +
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESF 541
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FT+N ++ LC+ ++ ++ + S G+ P++++Y LI C L EA
Sbjct: 249 PNLFTFNIFIQGLCRKGAIDEAARLLESI-VSEGLTPDVISYNTLICGFCKHSKLVEAEC 307
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +SG +P+ F YNTI+ G+
Sbjct: 308 YLHKMVNSGVEPNEFTYNTIINGF 331
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ +YN L+ CK L ++ +M S G++PN TY +I+ C
Sbjct: 277 IVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS-GVEPNEFTYNTIINGFCKAG 335
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A +++ GF PD F Y++++ G
Sbjct: 336 MMQNADKILRDAMFKGFIPDEFTYSSLING 365
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCN 58
++ + P+ FTYN ++ CK + N +R ++ G P+ TY+ LI+ +CN
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQ---NADKILRDAMFKGFIPDEFTYSSLINGLCN 368
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ AM + + GFK +YNT++KG
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 2 IFKQLPPDIFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+FK PD FTY+ L+ LC R++ Y +++ G K +++ Y L+ +
Sbjct: 348 MFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEK-----GFKHSIILYNTLVKGLS 402
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A++L+ + + G PD + YN ++ G
Sbjct: 403 KQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNG 435
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+I TYN L++ CK R ++ +M+ + G+ P++VT LI +C+
Sbjct: 522 MLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMK-TRGLTPDIVTLCTLICGLCSNG 580
Query: 61 NLREAMRL-VSALSDSGFKPDCFVYNTIMKGY 91
L +A L V+ + F ++N ++ +
Sbjct: 581 ELDKAYELFVTIEKEYKFSYSTAIFNIMINAF 612
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K I YN LVK L K + + M G P++ TY ++++ +C L
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEH-GCSPDIWTYNLVVNGLCKMGCLS 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ G PD F +NT++ GY
Sbjct: 444 DANGILNDAIAKGCIPDIFTFNTLIDGY 471
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY ++ CK ++ + F+ + S G+ P+ T +++ +C T L EA+
Sbjct: 635 PDNYTYRVMIDSYCKTGNIDLAHTFLLE-NISKGLVPSFTTCGKVLNCLCVTHRLSEAVV 693
Query: 68 LVSALSDSGFKPD 80
+++ + +G P+
Sbjct: 694 IINLMVQNGIVPE 706
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P+ TYN L+ LC L + +M A G P+LVTY L D +C ++L
Sbjct: 319 QELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR-GQIPDLVTYRTLSDYLCKNRHLD 377
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L+ A+ S + PD +Y TI+ G
Sbjct: 378 KAMALLKAIEGSNWDPDIQIYTTILDG 404
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK R +T +N +M + GI PN+VTY LI +C
Sbjct: 141 MIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEM-ITKGISPNIVTYNSLIHGLCKLC 199
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ L++ + DS PD F NT++
Sbjct: 200 EWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 229
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L D TYN L+ LC L +M AS G P+LVTY IL+D +C +L
Sbjct: 806 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS-GQIPDLVTYRILLDYLCKNHHL 864
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ A+ S D VYN + G
Sbjct: 865 AEAMVLLKAIEGSNLDADILVYNIAIDG 892
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PDIFTYN L+ LC V +++M S I PN+V ++ ++D +C
Sbjct: 664 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNS-KIMPNVVVFSTVVDALCKEG 722
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A +V + G +PD Y +M G+
Sbjct: 723 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGH 753
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+FT N +V LCK + ++ VD M G++PN+VTY L+D C
Sbjct: 211 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM-IHRGVEPNVVTYNALMDGHC--- 266
Query: 61 NLREAMRLVSALSDSGFKPDCFV----YNTIMKGY 91
LR + + + D+ DC YNT++ GY
Sbjct: 267 -LRNEVDVAVKVFDTMVHKDCVANVISYNTLINGY 300
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ LC + + D+M G +PN+VTY LI+ +C + + EA
Sbjct: 113 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGE-GFQPNVVTYGTLINGLCKDRQVTEAFN 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S + G P+ YN+++ G
Sbjct: 172 IFSEMITKGISPNIVTYNSLIHG 194
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + L+ + K + +TV + QM S GI P++ T ILI++ C+ + L A
Sbjct: 578 PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMD-SFGIPPDVYTLNILINSFCHLRRLGYAF 636
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ L GF+PD Y T+M G
Sbjct: 637 SVLAKLLKLGFQPDVVTYGTLMNG 660
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ ++ +V LCK + ++ VD M G++P++VTYT L+D C
Sbjct: 699 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMM-IKRGVEPDVVTYTALMDGHCLRS 757
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + G P+ YN ++ GY
Sbjct: 758 EMDEAVKVFDTMVHKGCVPNVRSYNILINGY 788
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK L + + S + +++ Y I ID +C L A
Sbjct: 846 PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS-NLDADILVYNIAIDGMCRAGELEAARD 904
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S LS G +PD YN ++ G
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHG 927
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y ++ +C+ L + + +S G++PN+ TY I+I +C L EA +
Sbjct: 393 PDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMIHGLCKQGLLAEASK 451
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S ++ +G P+ YN I +G+
Sbjct: 452 LFSEMNKNGCSPNDCTYNLITRGF 475
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T ++ LC + ++ + ++ LG +P+ T+T LI +C + EA
Sbjct: 76 IPPDVYTLAIVINSLCHLNRVDFAFSALAKI-LKLGHQPDATTFTTLIRGLCVEGKIGEA 134
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+P+ Y T++ G
Sbjct: 135 LHLFDKMIGEGFQPNVVTYGTLING 159
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ TY L+ C + D M G PN+ +Y ILI+ C +
Sbjct: 734 MIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM-VHKGCVPNVRSYNILINGYCQIQ 792
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L+ +S G D YNT++ G
Sbjct: 793 RMDKAMGLLEQMSLQGLIADTVTYNTLIHG 822
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ KQ PP +N L+ + K + +T+ + QM S GI P++ T I+I+++C+
Sbjct: 36 MLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD-SFGIPPDVYTLAIVINSLCHLN 94
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + G +PD + T+++G
Sbjct: 95 RVDFAFSALAKILKLGHQPDATTFTTLIRG 124
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ +YN L+ C+ + + ++QM G+ + VTY LI +C+
Sbjct: 769 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ-GLIADTVTYNTLIHGLCHVG 827
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L+ A+ L + SG PD Y ++
Sbjct: 828 RLQHAIALFHEMVASGQIPDLVTYRILL 855
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM---------------------RASLGIKP 44
+PPD++T N L+ C R L ++ + ++ + GI P
Sbjct: 612 IPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISP 671
Query: 45 NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ TY LI +CN + L++ + +S P+ V++T++
Sbjct: 672 DIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 717
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+++TYN ++ LCK L +M + G PN TY ++
Sbjct: 424 KGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN-GCSPNDCTYNLITRGFLRNNEAL 482
Query: 64 EAMRLVSALSDSGFKPD 80
+ L+ + GF D
Sbjct: 483 RTIELLEEMLARGFSVD 499
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD FTY+ ++ CL K LT+ + +M G PNLVTY I+I +N
Sbjct: 488 HLSPDTFTYSVIINCLGKAGHLTSAHKLFCEM-VDQGCVPNLVTYNIMIALQAKARNYPT 546
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A+ L + ++GF+PD Y+ +M+
Sbjct: 547 ALELYRDMQNAGFQPDKVTYSIVME 571
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ + L + D+M+ + G +P+ VTY LID L A+
Sbjct: 421 PNVVTYNRLIHSYGRANYLNEAVSVFDRMQEA-GCQPDRVTYCTLIDIHAKAGFLDVALH 479
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + ++ PD F Y+ I+
Sbjct: 480 MYQKMQEAHLSPDTFTYSVII 500
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ T M+ + G +P+ VTY+I+++ + + +L EA
Sbjct: 526 PNLVTYNIMIALQAKARNYPTALELYRDMQNA-GFQPDKVTYSIVMEVLGHCGHLEEAEA 584
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 585 IFTEMKRKNWVPDEPVYGLLV 605
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + R + + +M G +PN+VTY LI + L EA+ +
Sbjct: 387 DGHTYTTMVGILGRARQFGAINKLLAEMVRD-GCQPNVVTYNRLIHSYGRANYLNEAVSV 445
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ ++G +PD Y T++
Sbjct: 446 FDRMQEAGCQPDRVTYCTLI 465
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P+ TYN L+ LC L + +M A G P+LVTY L D +C ++L
Sbjct: 379 QELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR-GQIPDLVTYRTLSDYLCKNRHLD 437
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L+ A+ S + PD +Y TI+ G
Sbjct: 438 KAMALLKAIEGSNWDPDIQIYTTILDG 464
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ ++ L+ LCK R +T +N +M + GI PN+VTY LI +C +
Sbjct: 208 PNVVVFSTLIDSLCKDRQVTEAFNIFSEM-ITKGISPNIVTYNSLIHGLCKLCEWKHVTT 266
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + DS PD F NT++
Sbjct: 267 LMNEMVDSKIMPDVFTLNTVV 287
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+FT N +V LCK + ++ VD M G++PN+VTY L+D C
Sbjct: 271 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM-IHRGVEPNVVTYNALMDGHC--- 326
Query: 61 NLREAMRLVSALSDSGFKPDCFV----YNTIMKGY 91
LR + + + D+ DC YNT++ GY
Sbjct: 327 -LRNEVDVAVKVFDTMVHKDCVANVISYNTLINGY 360
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+I TYN L+ LCK V +++M S I P++ T ++D +C
Sbjct: 236 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDS-KIMPDVFTLNTVVDALCKEG 294
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +P+ YN +M G+
Sbjct: 295 MVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 325
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK + + + M +PN+V ++ LID++C +
Sbjct: 166 MIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG-NCQPNVVVFSTLIDSLCKDR 224
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA + S + G P+ YN+++ G
Sbjct: 225 QVTEAFNIFSEMITKGISPNIVTYNSLIHG 254
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y ++ +C+ L + + +S G++PN+ TY I+I +C L EA +
Sbjct: 453 PDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMIHGLCKQGLLAEASK 511
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S ++ +G P+ YN I +G+
Sbjct: 512 LFSEMNKNGCSPNDCTYNLITRGF 535
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T ++ LC + ++ + ++ LG +P+ T+T LI +C + EA
Sbjct: 101 IPPDVYTLAIVINSLCHLNRVDFAFSALAKI-LKLGHQPDATTFTTLIRGLCVEGKIGEA 159
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+P+ Y T++ G
Sbjct: 160 LHLFDKMIGEGFQPNVVTYGTLING 184
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ KQ PP +N L+ + K + +T+ + QM S GI P++ T I+I+++C+
Sbjct: 61 MLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD-SFGIPPDVYTLAIVINSLCHLN 119
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + G +PD + T+++G
Sbjct: 120 RVDFAFSALAKILKLGHQPDATTFTTLIRG 149
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+++TYN ++ LCK L +M + G PN TY ++
Sbjct: 484 KGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN-GCSPNDCTYNLITRGFLRNNEAL 542
Query: 64 EAMRLVSALSDSGFKPD 80
+ L+ + GF D
Sbjct: 543 RTIELLEEMLARGFSVD 559
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD FTY+ ++ CL K LT+ + +M G PNLVTY I+I +N
Sbjct: 479 HLSPDTFTYSVIINCLGKAGHLTSAHKLFCEM-VDQGCVPNLVTYNIMIALQAKARNYPT 537
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A+ L + ++GF+PD Y+ +M+
Sbjct: 538 ALELYRDMQNAGFQPDKVTYSIVME 562
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ + L + D+M+ + G +P+ VTY LID L A+
Sbjct: 412 PNVVTYNRLIHSYGRANYLNEAVSVFDRMQEA-GCQPDRVTYCTLIDIHAKAGFLDVALH 470
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + ++ PD F Y+ I+
Sbjct: 471 MYQKMQEAHLSPDTFTYSVII 491
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ T M+ + G +P+ VTY+I+++ + + +L EA
Sbjct: 517 PNLVTYNIMIALQAKARNYPTALELYRDMQNA-GFQPDKVTYSIVMEVLGHCGHLEEAEA 575
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 576 IFTEMKRKNWVPDEPVYGLLV 596
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + R + + +M G +PN+VTY LI + L EA+ +
Sbjct: 378 DGHTYTTMVGILGRARQFGAINKLLAEMVRD-GCQPNVVTYNRLIHSYGRANYLNEAVSV 436
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ ++G +PD Y T++
Sbjct: 437 FDRMQEAGCQPDRVTYCTLI 456
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCN 58
++ + PD+ TYN L+ LCK R L N VD +A L G PN++TY ILI++ C
Sbjct: 487 MLSHGITPDVITYNTLLNGLCKARKLD---NVVDTFKAMLEKGCTPNIITYNILIESFCK 543
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + EAM L + G PD T++ G
Sbjct: 544 DRKVSEAMELFKEMKTRGLTPDIVTLCTLICG 575
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+TYN +V LCK L+ ++ A G P++ T+ LID C +N+ +A+
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAK-GCIPDIFTFNTLIDGYCKQRNMDKAIE 482
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G PD YNT++ G
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNG 505
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N L+ LCK ++ ++ G+ PNL T+ I I +C + EA R
Sbjct: 214 PDILTFNKLIHVLCKKGNVQESEKLFSKVMKR-GVCPNLFTFNIFIQGLCRKGAIDEAAR 272
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G PD YNT++ G+
Sbjct: 273 LLESIVSEGLTPDVISYNTLICGF 296
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K PDIFT+N L+ CK R++ +D M S GI P+++TY L++ +C +
Sbjct: 453 IAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM-LSHGITPDVITYNTLLNGLCKARK 511
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + A+ + G P+ YN +++ +
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESF 541
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FT+N ++ LC+ ++ ++ + S G+ P++++Y LI C L EA
Sbjct: 249 PNLFTFNIFIQGLCRKGAIDEAARLLESI-VSEGLTPDVISYNTLICGFCKHSKLVEAEC 307
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +SG +P+ F YNTI+ G+
Sbjct: 308 YLHKMVNSGVEPNEFTYNTIINGF 331
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ +YN L+ CK L ++ +M S G++PN TY +I+ C
Sbjct: 277 IVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS-GVEPNEFTYNTIINGFCKAG 335
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A +++ GF PD F Y++++ G
Sbjct: 336 MMQNADKILRDAMFKGFIPDEFTYSSLING 365
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCNTKNLR 63
+ P+ FTYN ++ CK + N +R ++ G P+ TY+ LI+ +CN ++
Sbjct: 317 VEPNEFTYNTIINGFCKAGMMQ---NADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMN 373
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM + + GFK +YNT++KG
Sbjct: 374 RAMAVFYEAMEKGFKHSIILYNTLVKG 400
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 2 IFKQLPPDIFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+FK PD FTY+ L+ LC R++ Y +++ G K +++ Y L+ +
Sbjct: 348 MFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEK-----GFKHSIILYNTLVKGLS 402
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A++L+ + + G PD + YN ++ G
Sbjct: 403 KQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNG 435
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+I TYN L++ CK R ++ +M+ + G+ P++VT LI +C+
Sbjct: 522 MLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMK-TRGLTPDIVTLCTLICGLCSNG 580
Query: 61 NLREAMRL-VSALSDSGFKPDCFVYNTIMKGY 91
L +A L V+ + F ++N ++ +
Sbjct: 581 ELDKAYELFVTIEKEYKFSYSTAIFNIMINAF 612
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K I YN LVK L K + + M G P++ TY ++++ +C L
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEH-GCSPDIWTYNLVVNGLCKMGCLS 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ G PD F +NT++ GY
Sbjct: 444 DANGILNDAIAKGCIPDIFTFNTLIDGY 471
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD +TY ++ CK ++ + F+ + S G+ P+ T +++ +C T L EA+
Sbjct: 634 APDNYTYRVMIDSYCKTGNIDLAHTFLLE-NISKGLVPSFTTCGKVLNCLCVTHRLSEAV 692
Query: 67 RLVSALSDSGFKPD 80
+++ + +G P+
Sbjct: 693 VIINLMVQNGIVPE 706
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P++ TYN L+ CK L + Y + M S G+ P+ TY++ ID +C
Sbjct: 440 MLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNES-GLVPDEWTYSVFIDTLCKRG 498
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L +L + G K + +Y+T++ GY
Sbjct: 499 LVEEARSLFESLKEKGIKANEVIYSTLIDGY 529
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ C+ +++ + + +M ++PN+VTY ILI C +L A +
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLER-KLQPNVVTYNILIHGQCKEGDLGSAYK 470
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S +++SG PD + Y+ +
Sbjct: 471 LLSLMNESGLVPDEWTYSVFI 491
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY ++ LC+ T N +M +PN+ TYT+LI ++C N +A +
Sbjct: 307 PTVRTYTVIIFALCQLGRKTEALNMFKEMTEK-HCQPNVHTYTVLICSLCEDSNFDDAKK 365
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + G P YN ++ GY
Sbjct: 366 ILNGMLEKGLIPSVVTYNALIDGY 389
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY+ + LCK + + + ++ GIK N V Y+ LID C + +
Sbjct: 480 LVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEK-GIKANEVIYSTLIDGYCKVGKVSDG 538
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ YN+++ GY
Sbjct: 539 RFLLDKMLSAGCVPNSITYNSLIDGY 564
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ CK ++ VD M I+P TYTILIDN+ +A
Sbjct: 552 PNSITYNSLIDGYCKEKNFKEARLLVDIM-IKRDIEPAADTYTILIDNLLKDDEFDQAHD 610
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G PD F+Y + Y
Sbjct: 611 MFDQMLSTGSHPDVFIYTAFIHAY 634
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P + TYN L+ CK + L+ + + S PN TY LI C K
Sbjct: 370 MLEKGLIPSVVTYNALIDGYCK-KGLSASALEILSLMESNNCSPNARTYNELILGFCRGK 428
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +AM L+ + + +P+ YN ++ G
Sbjct: 429 NIHKAMSLLHKMLERKLQPNVVTYNILIHG 458
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P TY L+ L K ++ DQM S G P++ YT I C+
Sbjct: 580 MIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQM-LSTGSHPDVFIYTAFIHAYCSHG 638
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A L+ ++ G PD +Y + Y
Sbjct: 639 RLKDAEVLICKMNAKGIMPDTMLYTLFIDAY 669
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY L+ LC+ + ++ M G+ P++VTY LID C
Sbjct: 338 KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEK-GLIPSVVTYNALIDGYCKKGLSA 396
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ ++S + + P+ YN ++ G+
Sbjct: 397 SALEILSLMESNNCSPNARTYNELILGF 424
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + + Y+ L+ CK ++ +D+M S G PN +TY LID C KN +
Sbjct: 513 KGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKM-LSAGCVPNSITYNSLIDGYCKEKNFK 571
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA LV + +P Y ++
Sbjct: 572 EARLLVDIMIKRDIEPAADTYTILI 596
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL------GIKPNLVTYTILIDNVCNTKNL 62
D F + ++C L + + +D+M++ + PN+ T +++ C N+
Sbjct: 161 DAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNV 220
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA VS + +G D F Y +++ GY
Sbjct: 221 VEAELYVSKIVQAGLSLDTFTYTSLILGY 249
>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDIFTYN L+ C+ + V R + PN VTYT LID C +L EA
Sbjct: 272 ISPDIFTYNSLIYGFCREGRMREA---VQLFRDIKDVTPNHVTYTSLIDGYCRVNDLDEA 328
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+RL +S+ G P YN+I++
Sbjct: 329 LRLKEVMSEKGLYPTVITYNSILR 352
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN L+ CK + D+M + GI P++ TY LI C +REA++
Sbjct: 239 PDLFTYNTLISLYCKKGMHYEALSVQDRMEMA-GISPDIFTYNSLIYGFCREGRMREAVQ 297
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + D P+ Y +++ GY
Sbjct: 298 LFRDIKD--VTPNHVTYTSLIDGY 319
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD T N L+ CK + + D+M + G+K + TY LI C K +
Sbjct: 373 RKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGA-GLKLDQFTYKALIHGFCKAKEID 431
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ + D+GF P Y+ ++ Y
Sbjct: 432 KAKELLFGMMDAGFSPSYCTYSWLVDSY 459
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TY L+ C+ L + M + G+ P ++TY ++ +C LR
Sbjct: 303 KDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVM-SEKGLYPTVITYNSILRKLCEGGRLR 361
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L++ +S+ +PD NT++ Y
Sbjct: 362 DANILLNEMSERKIEPDNVTCNTLINAY 389
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
+I YN L+ CK + + +M + P+L TY LI C EA+
Sbjct: 204 ANIHVYNVLLHACCKSGDVEKAEKVLSEMELKC-VFPDLFTYNTLISLYCKKGMHYEALS 262
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G PD F YN+++ G+
Sbjct: 263 VQDRMEMAGISPDIFTYNSLIYGF 286
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + L+ L K R TV+ +M LG+ N+ Y +L+ C + ++ +A +
Sbjct: 169 PHLHACTVLLNSLAKDRLTDTVWKIYKKM-VKLGVVANIHVYNVLLHACCKSGDVEKAEK 227
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++S + PD F YNT++ Y
Sbjct: 228 VLSEMELKCVFPDLFTYNTLISLY 251
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L D FTY L+ CK + + + M + G P+ TY+ L+D+ C +
Sbjct: 405 MVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDA-GFSPSYCTYSWLVDSYCKQQ 463
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N ++L L G D VY +++ +
Sbjct: 464 NEEAVIKLPDELVRRGLCVDVSVYRALIRRF 494
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TY++LV CK ++ V D++ G+ ++ Y LI C + + A
Sbjct: 446 SPSYCTYSWLVDSYCKQQNEEAVIKLPDEL-VRRGLCVDVSVYRALIRRFCKIEKIDCAQ 504
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R++ + D G D VY ++ GY
Sbjct: 505 RVLGLMKDKGIFGDSVVYTSLAYGY 529
>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 393
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD YN L+ LCK R + V++F+ +M G N++TY L+D +C +
Sbjct: 222 KNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDR-GQPANIITYNSLLDGLCKNHQVD 280
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ + + G +P+ + Y ++ G
Sbjct: 281 KAITLLTKIKNQGIRPNIYTYTILVDG 307
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P +I TYN L+ LCK + + +++ GI+PN+ TYTIL+D +C LR+A
Sbjct: 260 PANIITYNSLLDGLCKNHQVDKAITLLTKIKNQ-GIRPNIYTYTILVDGLCKNGRLRDAQ 318
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G++ D +Y ++ G
Sbjct: 319 EVYQDLLNKGYQLDARIYTVMING 342
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 1 LIFKQLPPDIFTYNFLVKCL-----CKCRSLTTVYNFVDQMRASLG---------IKPNL 46
+I K++ PD+ TYN L+ L K R ++ + QM+ ++G + PN+
Sbjct: 65 MIDKKIYPDVVTYNTLIYSLLNFVYIKIRK-EYGFSILGQMKEAVGLLNQMTSKTVTPNI 123
Query: 47 VTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
T+T L+D +C +++A +++ + +P+ YN++M GY
Sbjct: 124 RTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGY 168
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + P++ +Y ++ LCK + + N +M S + P+ V Y LID +C ++ +
Sbjct: 186 LRGMTPNVRSYKVMINGLCKNKMVDEAANLFKEMH-SKNMVPDTVAYNSLIDGLCKSRRI 244
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + D G + YN+++ G
Sbjct: 245 YDVWDFIGEMHDRGQPANIITYNSLLDG 272
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 1 LIFKQLPPDIFTYN------FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
+I +++ P+I TYN FLVK + K + L +N + + G+ PN+ +Y ++I+
Sbjct: 149 MIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQL---FNTI----SLRGMTPNVRSYKVMIN 201
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C K + EA L + PD YN+++ G
Sbjct: 202 GLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDG 237
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCK---CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ + P+I+TY LV LCK R VY Q + G + + YT++I+ +C
Sbjct: 292 QGIRPNIYTYTILVDGLCKNGRLRDAQEVY----QDLLNKGYQLDARIYTVMINGLCKEG 347
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA+ L+S + D+ PD Y ++
Sbjct: 348 FLDEALSLLSKMEDNKCTPDGVTYEITIRA 377
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+KP++V Y +ID +C K + + L S + D PD YNT++
Sbjct: 35 VKPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLI 81
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+K LCK R + Y V+ MR + G PN+VT++ LI +CN + +A +
Sbjct: 344 DVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEV 403
Query: 69 VSAL-SDSGFKPDCFVYNTIMKG 90
+ + G P+ F Y +++G
Sbjct: 404 YERMVAVEGISPNRFTYAFLLEG 426
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + Y+ L+ LCK + Y F+++M RA G P++VT++ILI+ +C+ + +
Sbjct: 717 PHVIAYSALIDGLCKAGRIDEAYEFLERMIRA--GRIPDVVTFSILINGLCDAGRIDTGL 774
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L +++ G K D + YN ++ Y
Sbjct: 775 ELFCGMAERGCKADIYAYNAMINAY 799
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L PD+ T+N ++ LCK + + +N V + G +PN+VTY+ LID +
Sbjct: 499 MIESGLSPDVITFNSVLDGLCKEQRILDAHN-VFKRALERGCRPNVVTYSTLIDGLSKMA 557
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L++ + + G + + Y+T++ G
Sbjct: 558 KMDEALQLLAKMVELGCRANTVTYSTVVDG 587
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ T+ ++K LCK + + VD+M G P++ +T+L+ +C + EA
Sbjct: 103 PPELITFGLIIKGLCKEGEIEAAFRVVDEM-VDRGFVPDVEIHTVLLHALCELGRVDEAW 161
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ GF PD YNT++ G
Sbjct: 162 FFFQQVLLIGFTPDAVTYNTMVDG 185
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +FT+ V L K +LT Y F D M + G+ PN VTY LID +C L A+
Sbjct: 209 PTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQT-GVSPNTVTYDALIDGLCKAGKLDIALG 267
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L D + F +++++ G
Sbjct: 268 L---LRDKNSQAGMFAFSSLLHG 287
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ L K + + +M LG + N VTY+ ++D + + +A+
Sbjct: 541 PNVVTYSTLIDGLSKMAKMDEALQLLAKM-VELGCRANTVTYSTVVDGLLKVGRMEDAVV 599
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D+G PD YNT++ G+
Sbjct: 600 VLRQMRDAGCLPDAVTYNTLIDGF 623
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+ K +P P++ +N L+ LC+ R + + D M+ S G +++TY IL+ +C
Sbjct: 300 LLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKES-GCSADVITYNILLKGLCKL 358
Query: 60 KNLREAMRLVSALSDS-GFKPDCFVYNTIMKG 90
+ + EA R V + + G P+ ++T+++G
Sbjct: 359 RRIPEAYRHVELMRRTEGCSPNVVTFSTLIQG 390
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ +V LCK +T + ++M + P+++ Y+ LID +C + EA
Sbjct: 681 PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYE 740
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + +G PD ++ ++ G
Sbjct: 741 FLERMIRAGRIPDVVTFSILING 763
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV L ++ +++M A+ G P L+T+ ++I +C + A R
Sbjct: 69 PNAVTYNTLVNALLGQGRAKEAFSLLERMAAN-GCPPELITFGLIIKGLCKEGEIEAAFR 127
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V + D GF PD ++ ++
Sbjct: 128 VVDEMVDRGFVPDVEIHTVLL 148
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 10 IFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ TYN L+ LCK C + T + G +P +VTY+ +ID +C + +
Sbjct: 1 MVTYNVLINGLCKAGRVCDAFTAFRKAI-----QFGFRPTVVTYSTVIDGLCRDNEVDKG 55
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+L+ ++ G P+ YNT++
Sbjct: 56 CKLLEEMAGRGCAPNAVTYNTLV 78
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-----RASLG---------------IKPN 45
+ P+ FTY FL++ LCK + +QM R+S +P
Sbjct: 413 ISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPT 472
Query: 46 LVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LVTY L+ + + +R+A+ L+ + +SG PD +N+++ G
Sbjct: 473 LVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDG 517
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY+ +V L K + + QMR + G P+ VTY LID + LREA+ L+
Sbjct: 580 TYSTVVDGLLKVGRMEDAVVVLRQMRDA-GCLPDAVTYNTLIDGFFKRQRLREAVGLLRE 638
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ ++GF P Y T+ G
Sbjct: 639 MLEAGFHPSVVTYTTLCHG 657
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD Y+ L+ CK + + +R+S GI+P + Y+ ++D++C +
Sbjct: 953 MLRKNLKPDAIVYSSLIDAFCKADKVDDAWKL---LRSS-GIEPTITMYSTMVDSLCKNR 1008
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ ++ + +P ++ ++ Y
Sbjct: 1009 GTDKALEVIREMKSKNCEPGIHIWTSLATAY 1039
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+F ++ L+ LC+ L Q+ ++ PN+V + L++ +C + + EA L
Sbjct: 278 MFAFSSLLHGLCQAHRLEEAI----QLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELF 333
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ +SG D YN ++KG
Sbjct: 334 DVMKESGCSADVITYNILLKG 354
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ ++ LC+ + +++M A G PN VTY L++ + +EA
Sbjct: 34 PTVVTYSTVIDGLCRDNEVDKGCKLLEEM-AGRGCAPNAVTYNTLVNALLGQGRAKEAFS 92
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G P+ + I+KG
Sbjct: 93 LLERMAANGCPPELITFGLIIKG 115
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L LC+ +D M A+ G PN +TY+ ++D +C + EA+
Sbjct: 646 PSVVTYTTLCHGLCRSGRFDEAVEILDYM-AARGCAPNAITYSSIVDGLCKAGRVTEALG 704
Query: 68 LVSALS-DSGFKPDCFVYNTIMKG 90
++ D P Y+ ++ G
Sbjct: 705 YFEKMARDEVVAPHVIAYSALIDG 728
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y ++ L K S + +MR S G P+L TYTI+I + K L A
Sbjct: 890 PDACNYMTVMDGLFKAGSPEVAAKLLQEMR-SRGHSPDLRTYTIMISGLSKAKQLPLACD 948
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ KPD VY++++ +
Sbjct: 949 YFEEMLRKNLKPDAIVYSSLIDAF 972
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
P++ T++ L++ LC + + ++M A GI PN TY L++ +C + R
Sbjct: 379 PNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSR 434
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+ YN ++ C + Y +++M+ GI N VT+ I+I +C + EA+
Sbjct: 788 DIYAYNAMINAYCLKGEFSAAYALLEEMKTH-GIAKNTVTHGIVIKALCGNDRIDEAVSY 846
Query: 69 VSALSDSGFKPDC---FVYNTIM 88
++ + DC YNT++
Sbjct: 847 FHSIPE-----DCRDEISYNTLI 864
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ + L+ LC+ + + F Q+ +G P+ VTY ++D + L A
Sbjct: 139 PDVEIHTVLLHALCELGRVDEAWFFFQQVLL-IGFTPDAVTYNTMVDGLYKAGRLEAAGM 197
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ L++S P F + + G
Sbjct: 198 VLQLLAESFSSPTVFTFTIAVDG 220
>gi|260780430|gb|ACX50761.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780496|gb|ACX50794.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 188
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + N+ +
Sbjct: 14 QVPPHAFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGNVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD ++ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTFSVVVNG 96
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T++ +V LCK + ++ + + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDAF 167
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K ++ + +M G KP++VT++++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRM-IDEGFKPDVVTFSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCQFNGLAINSMFYSSLIDG 131
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P+ TYN L+ LC L + +M A G P+LVTY L D +C ++L
Sbjct: 379 QELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR-GQIPDLVTYRTLSDYLCKNRHLD 437
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L+ A+ S + PD +Y TI+ G
Sbjct: 438 KAMALLKAIEGSNWDPDIQIYTTILDG 464
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ ++ L+ LCK R +T +N +M + GI PN+VTY LI +C +
Sbjct: 208 PNVVVFSTLIDSLCKDRQVTEAFNIFSEM-ITKGISPNIVTYNSLIHGLCKLCEWKHVTT 266
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + DS PD F NT++
Sbjct: 267 LMNEMVDSKIMPDVFTLNTVV 287
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+FT N +V LCK + ++ VD M G++PN+VTY L+D C
Sbjct: 271 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM-IHRGVEPNVVTYNALMDGHC--- 326
Query: 61 NLREAMRLVSALSDSGFKPDCFV----YNTIMKGY 91
LR + + + D+ DC YNT++ GY
Sbjct: 327 -LRNEVDVAVKVFDTMVHKDCVANVISYNTLINGY 360
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+I TYN L+ LCK V +++M S I P++ T ++D +C
Sbjct: 236 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDS-KIMPDVFTLNTVVDALCKEG 294
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +P+ YN +M G+
Sbjct: 295 MVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 325
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK + + + M +PN+V ++ LID++C +
Sbjct: 166 MIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG-NCQPNVVVFSTLIDSLCKDR 224
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA + S + G P+ YN+++ G
Sbjct: 225 QVTEAFNIFSEMITKGISPNIVTYNSLIHG 254
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y ++ +C+ L + + +S G++PN+ TY I+I +C L EA +
Sbjct: 453 PDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMIHGLCKQGLLAEASK 511
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S ++ +G P+ YN I +G+
Sbjct: 512 LFSEMNKNGCSPNDCTYNLITRGF 535
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T ++ LC + ++ + ++ LG +P+ T+T LI +C + EA
Sbjct: 101 IPPDVYTLAIVINSLCHLNRVDFAFSALAKI-LKLGHQPDATTFTTLIRGLCVEGKIGEA 159
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+P+ Y T++ G
Sbjct: 160 LHLFDKMIGEGFQPNVVTYGTLING 184
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ KQ PP +N L+ + K + +T+ + QM S GI P++ T I+I+++C+
Sbjct: 61 MLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD-SFGIPPDVYTLAIVINSLCHLN 119
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + G +PD + T+++G
Sbjct: 120 RVDFAFSALAKILKLGHQPDATTFTTLIRG 149
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+++TYN ++ LCK L +M + G PN TY ++
Sbjct: 484 KGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN-GCSPNDCTYNLITRGFLRNNEAL 542
Query: 64 EAMRLVSALSDSGFKPD 80
+ L+ + GF D
Sbjct: 543 RTIELLEEMLARGFSVD 559
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+F+YN +++ C+ + L ++M+ S G +LVT+ ILID C + EA
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGS-GCSWSLVTWGILIDAFCKAGKMDEA 231
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + G + D VY ++++G+
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGF 257
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P +F YN L+ LCK SL + ++M+ P++V++ I+ID +++
Sbjct: 524 ELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGDIKS 582
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A L+ +S +G PD F Y+ ++
Sbjct: 583 AESLLVGMSRAGLSPDLFTYSKLI 606
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN L++ CK L + M G++PN+ TYT LID +C +EA+
Sbjct: 279 SPCAITYNTLIRGFCKLGQLKEASEIFEFM-IERGVRPNVYTYTGLIDGLCGVGKTKEAL 337
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L++ + + +P+ YN I+
Sbjct: 338 QLLNLMIEKDEEPNAVTYNIII 359
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F L D+ Y L++ C C L D++ G P +TY LI C L
Sbjct: 240 FMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV-LERGDSPCAITYNTLIRGFCKLGQL 298
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA + + + G +P+ + Y ++ G
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDG 326
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+++TY L+ LC ++ M +PN VTY I+I+ +C
Sbjct: 308 MIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM-IEKDEEPNAVTYNIIINKLCKDG 366
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +V + +PD YN ++ G
Sbjct: 367 LVADAVEIVELMKKRRTRPDNITYNILLGG 396
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN L+ LCK L + D + LG + VT IL+++ ++ +AM
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLG-AGDRVTTNILLNSTLKAGDVNKAME 480
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +SDS + Y ++ G+
Sbjct: 481 LWKQISDSKIVRNSDTYTAMIDGF 504
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 4 KQLPPDIF----TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
K L D F + + L++C + R + + M G N+ + IL+ +C
Sbjct: 97 KMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKR-GFAFNVYNHNILLKGLCRN 155
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L+ + + PD F YNT+++G+
Sbjct: 156 LECGKAVSLLREMRRNSLMPDVFSYNTVIRGF 187
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN ++ LCK V ++M G +PN +TY ILI+N C L EA
Sbjct: 486 IAPDVITYNSVLNGLCKAGKAKEVNETFEEMILK-GCRPNAITYNILIENFCKINQLEEA 544
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G PD +NT++ G+
Sbjct: 545 SGVIVRMCQDGLVPDAVSFNTLIHGF 570
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ YN LVK LC+ + +++M G P++ TY I+I+ +C N+
Sbjct: 379 KDLKPDLVVYNSLVKGLCRQGLILHALQVMNEM-VEEGCHPDIWTYNIIINGLCKMGNIS 437
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ G+ PD F +NT++ GY
Sbjct: 438 DAAVVMNDAIVKGYLPDVFTFNTLIDGY 465
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+TYN ++ LCK +++ ++ G P++ T+ LID C L A++
Sbjct: 418 PDIWTYNIIINGLCKMGNISDAAVVMNDAIVK-GYLPDVFTFNTLIDGYCKRLKLDSALQ 476
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + G PD YN+++ G
Sbjct: 477 LVERMWTYGIAPDVITYNSVLNG 499
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FT N ++ LC+ L V++M A + P++VTY L+ +C ++EA + +
Sbjct: 247 FTCNIWIRGLCEDGRLEEAVALVERMGAY--VAPDVVTYNTLMRGLCKDSKVQEAAQYLG 304
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ + G PD F YNTI+ GY
Sbjct: 305 RMMNQGCIPDDFTYNTIIDGY 325
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K PD+FT+N L+ CK L + V++M + GI P+++TY +++ +C
Sbjct: 447 IVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM-WTYGIAPDVITYNSVLNGLCKAGK 505
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+E + G +P+ YN +++ +
Sbjct: 506 AKEVNETFEEMILKGCRPNAITYNILIENF 535
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L++ LCK + ++ +M + G P+ TY +ID C + L+EA
Sbjct: 278 PDVVTYNTLMRGLCKDSKVQEAAQYLGRM-MNQGCIPDDFTYNTIIDGYCKSGMLQEATE 336
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ GF PD Y +++ G
Sbjct: 337 LLKDAVFKGFVPDRVTYCSLING 359
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN ++ CK L + G P+ VTY LI+ +C ++ A+
Sbjct: 313 PDDFTYNTIIDGYCKSGMLQEATELLKDAVFK-GFVPDRVTYCSLINGLCAEGDIERALE 371
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + KPD VYN+++KG
Sbjct: 372 LFNEAQAKDLKPDLVVYNSLVKG 394
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+FK PD TY L+ LC + ++ +A +KP+LV Y L+ +C
Sbjct: 342 VFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAK-DLKPDLVVYNSLVKGLCRQGL 400
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+++++ + + G PD + YN I+ G
Sbjct: 401 ILHALQVMNEMVEEGCHPDIWTYNIIING 429
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P+ TYN L++ CK L + +M G+ P+ V++ LI C
Sbjct: 516 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRM-CQDGLVPDAVSFNTLIHGFCRNG 574
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L L + G+ +N ++ Y
Sbjct: 575 DLDGAYLLFQKLDEKGYSATADTFNILIGAY 605
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD++TY LV LCK ++ Y + +M S G P++ T+ +++ +
Sbjct: 621 MISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEM-ISKGFVPSMATFGRMLNLLAMNH 679
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+ ++ + G P+ V +TI+
Sbjct: 680 RVSEAVAIIHIMVRMGVVPE--VVDTIL 705
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD ++N L+ C+ L Y ++ G T+ ILI + N++ A
Sbjct: 556 LVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEK-GYSATADTFNILIGAYSSKLNMQMA 614
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + G+KPD + Y ++ G
Sbjct: 615 EKIFGEMISKGYKPDLYTYRILVDG 639
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ ++ +M S G KP+L TY IL+D +C N+ A ++
Sbjct: 597 TFNILIGAYSSKLNMQMAEKIFGEM-ISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAE 655
Query: 72 LSDSGFKPDCFVYNTIM 88
+ GF P + ++
Sbjct: 656 MISKGFVPSMATFGRML 672
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP YN ++ L + +M A+ G+ P+ T+T+ + + C T A+
Sbjct: 103 PPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAA-GVAPDARTHTVRLKSFCLTGRPHVAL 161
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL+ +LS+ G Y T+++G
Sbjct: 162 RLLRSLSERGCDAKPAAYCTVVRG 185
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+F+YN +++ C+ + L ++M+ S G +LVT+ ILID C + EA
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGS-GCSWSLVTWGILIDAFCKAGKMDEA 231
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + G + D VY ++++G+
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGF 257
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P +F YN L+ LCK SL + ++M+ P++V++ I+ID +++
Sbjct: 524 ELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGDIKS 582
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A L+ +S +G PD F Y+ ++
Sbjct: 583 AESLLVGMSRAGLSPDLFTYSKLI 606
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN L++ CK L + M G++PN+ TYT LID +C +EA+
Sbjct: 279 SPCAITYNTLIRGFCKLGQLKEASEIFEFM-IERGVRPNVYTYTGLIDGLCGVGKTKEAL 337
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+ ++ + + +P+ YN I+
Sbjct: 338 QPLNLMIEKDEEPNAVTYNIII 359
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F L D+ Y L++ C C L D++ G P +TY LI C L
Sbjct: 240 FMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV-LERGDSPCAITYNTLIRGFCKLGQL 298
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA + + + G +P+ + Y ++ G
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDG 326
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+++TY L+ LC ++ M +PN VTY I+I+ +C
Sbjct: 308 MIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLM-IEKDEEPNAVTYNIIINKLCKDG 366
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +V + +PD YN ++ G
Sbjct: 367 LVADAVEIVELMKKRRTRPDNITYNILLGG 396
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN L+ LCK L + D + LG + VT IL+++ ++ +AM
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLG-AGDRVTTNILLNSTLKAGDVNKAME 480
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +SDS + Y ++ G+
Sbjct: 481 LWKQISDSKIVRNSDTYTAMIDGF 504
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 4 KQLPPDIF----TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
K L D F + + L++C + R + + M G N+ + IL+ +C
Sbjct: 97 KMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKR-GFAFNVYNHNILLKGLCRN 155
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L+ + + PD F YNT+++G+
Sbjct: 156 LECGKAVSLLREMRRNSLMPDVFSYNTVIRGF 187
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ + ++ MR + G+KP++VTY+ LI+ +C + ++A R
Sbjct: 297 PDVVTYSMLINTFARAGQFDASLELLEDMRRN-GVKPDVVTYSTLINVLCKERKFQDAFR 355
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G P+ YN++M G
Sbjct: 356 LLELMEAAGSPPNVVTYNSVMDG 378
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ LCK R + ++ M A+ G PN+VTY ++D +C + + E R
Sbjct: 332 PDVVTYSTLINVLCKERKFQDAFRLLELMEAA-GSPPNVVTYNSVMDGLCKSGKMDEVHR 390
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + S PD Y+ IM G
Sbjct: 391 VYEMMLKSRCSPDVVTYSIIMNG 413
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +F YN ++ LC+ + Y +++M I PN+ TYTIL++ +C + + A
Sbjct: 86 PTLFIYNGIITGLCRASRVMDAYKVLEKM-VEESIVPNVFTYTILLNGLCRSNKTKLARE 144
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + +G KP+ Y T+++
Sbjct: 145 VFQEMKRNGCKPNPITYGTLIQ 166
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TYN ++ LCK + V+ + M S P++VTY+I+++ + L A+
Sbjct: 366 PPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSR-CSPDVVTYSIIMNGLSKAGMLDSAV 424
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L + S PD Y+ ++
Sbjct: 425 KLFELIKSSREGPDAAAYSMVI 446
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y + LCK L V+++R S G+ P++VTY++LI+ ++ L+ +
Sbjct: 267 YPGYLDALCKAGYLDRARKSVEELRQS-GVVPDVVTYSMLINTFARAGQFDASLELLEDM 325
Query: 73 SDSGFKPDCFVYNTIM 88
+G KPD Y+T++
Sbjct: 326 RRNGVKPDVVTYSTLI 341
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 37/123 (30%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILI----------- 53
+LP D+ T +V LCK L F+++MR +G++PN VTY+ L+
Sbjct: 188 ELPTDVITCTTIVGGLCKASRLDDALKFMEEMR-QMGVRPNEVTYSNLVHGFRQHGELDR 246
Query: 54 -------------------------DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
D +C L A + V L SG PD Y+ ++
Sbjct: 247 VIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLI 306
Query: 89 KGY 91
+
Sbjct: 307 NTF 309
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++FTY L+ LC+ +M+ + G KPN +TY LI ++
Sbjct: 114 MVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRN-GCKPNPITYGTLIQHLSRAG 172
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+R++ D TI+ G
Sbjct: 173 EIDEALRVMIEQRSLELPTDVITCTTIVGG 202
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ + ++ MR + G+KP++VTY+ LI+ +C + ++A R
Sbjct: 297 PDVVTYSMLINTFARAGQFDASLELLEDMRRN-GVKPDVVTYSTLINVLCKERKFQDAFR 355
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G P+ YN++M G
Sbjct: 356 LLELMEAAGSPPNVVTYNSVMDG 378
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ LCK R + ++ M A+ G PN+VTY ++D +C + + E R
Sbjct: 332 PDVVTYSTLINVLCKERKFQDAFRLLELMEAA-GSPPNVVTYNSVMDGLCKSGKMDEVHR 390
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + S PD Y+ IM G
Sbjct: 391 VYEMMLKSRCSPDVVTYSIIMNG 413
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +F YN ++ LC+ + Y +++M I PN+ TYTIL++ +C + + A
Sbjct: 86 PTVFIYNGIITGLCRASRVMDAYKVLEKM-VEESIVPNVFTYTILLNGLCRSNKTKLARE 144
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + +G KP+ Y T+++
Sbjct: 145 VFQEMKRNGCKPNPITYGTLIQ 166
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ TYN ++ LCK + V+ + M S P++VTY+I+++ + L A+
Sbjct: 366 PPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSR-CSPDVVTYSIIMNGLSKAGMLDSAV 424
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L + S PD Y+ ++
Sbjct: 425 KLFELIKSSREGPDAAAYSMVI 446
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y + LCK L V+++R S G+ P++VTY++LI+ ++ L+ +
Sbjct: 267 YPGYLDALCKAGYLDRARKSVEELRQS-GVVPDVVTYSMLINTFARAGQFDASLELLEDM 325
Query: 73 SDSGFKPDCFVYNTIM 88
+G KPD Y+T++
Sbjct: 326 RRNGVKPDVVTYSTLI 341
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 37/123 (30%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILI----------- 53
+LP D+ T +V LCK L F+++MR +G++PN VTY+ L+
Sbjct: 188 ELPTDVITCTTIVGGLCKASRLDDALKFMEEMR-QMGVRPNEVTYSNLVHGFRQHGELDR 246
Query: 54 -------------------------DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
D +C L A + V L SG PD Y+ ++
Sbjct: 247 VIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLI 306
Query: 89 KGY 91
+
Sbjct: 307 NTF 309
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++FTY L+ LC+ +M+ + G KPN +TY LI ++
Sbjct: 114 MVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRN-GCKPNPITYGTLIQHLSRAG 172
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+R++ D TI+ G
Sbjct: 173 EIDEALRVMIEQRSLELPTDVITCTTIVGG 202
>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
Length = 798
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LCK + D+M GI PN+ T+TIL+ ++CN L+EA
Sbjct: 207 PNRATYNVLMDGLCKRGTAVDALKLFDEM-LQRGITPNVKTHTILLSSMCNAGQLKEAEN 265
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++++ D G PD YN + G
Sbjct: 266 LLNSMEDKGCPPDEVTYNAFLSG 288
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD F YN L+K LC L + + +M A + + T+TI+I +C + +
Sbjct: 380 KRFTPDTFCYNTLLKALCDSGDLDGARSLMSEM-AQNNVVLDTNTHTIMIHGLCKKQLVD 438
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM++ + + G P YN ++ G
Sbjct: 439 EAMQVFDGMVEVGCHPTVMTYNVLIDG 465
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK R+L +++ G + +TY LID++ +AM
Sbjct: 537 PDVVTYNTLLNGLCKVRNLDGALRLFRELQVK-GFSLDEITYGTLIDSLLRAHRYNDAMT 595
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + G P +YN+IM+
Sbjct: 596 LFQDILHIGGTPSLSIYNSIMR 617
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
LV +C+ + Y + + S G+ P++VTY L++ +C +NL A+RL L
Sbjct: 510 LVDSMCQSGQVLKAYKLLRGIMDS-GVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVK 568
Query: 76 GFKPDCFVYNTIM 88
GF D Y T++
Sbjct: 569 GFSLDEITYGTLI 581
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 36/123 (29%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS----LGIK---------------- 43
K PPD TYN + LCK + ++ +R + LG+K
Sbjct: 273 KGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLAGRYE 332
Query: 44 ----------------PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTI 87
P++V YTI+I + +A + + F PD F YNT+
Sbjct: 333 EGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTL 392
Query: 88 MKG 90
+K
Sbjct: 393 LKA 395
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV--------------TYTILI 53
P + TYN L+ L + L +M +G P+L + L+
Sbjct: 454 PTVMTYNVLIDGLYRAHRLEEARMLFYKME--VGNNPSLFLRLTLGANQVKDSESLQKLV 511
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
D++C + + +A +L+ + DSG PD YNT++ G
Sbjct: 512 DSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNG 548
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ T+ L+ +C L N ++ M G P+ VTY + +C
Sbjct: 235 MLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDK-GCPPDEVTYNAFLSGLCKAG 293
Query: 61 NLREAMRLVSALSDSG 76
+ EA+ + AL +G
Sbjct: 294 RVDEAIERLEALRRTG 309
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD+ TY L+ C L ++ +++M+ I PN+ T+ ILID +
Sbjct: 223 MIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLK-NINPNVCTFNILIDALSKEG 281
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA L++ + + KPD F YN+++ GY
Sbjct: 282 KMKEAKILLAVMMKACIKPDVFTYNSLIDGY 312
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI TYN L+ LCK L +M+ GI+P++ +YTIL+D +C + L
Sbjct: 366 KNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQ-GIQPDVYSYTILLDGLCKSGRLE 424
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A + L G+ + Y ++
Sbjct: 425 DAKEIFQRLLAKGYHLNVHAYTVLI 449
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ Y ++ LCK + + + ++M+ I P++VTY LID +C +L
Sbjct: 331 RGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMI-PDIVTYNSLIDGLCKNHHLE 389
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + + G +PD + Y ++ G
Sbjct: 390 RAIALCKRMKEQGIQPDVYSYTILLDG 416
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T N L+K LC + F DQ+ A G + + V+Y LI+ +C T + R
Sbjct: 125 PNAITLNTLIKGLCFRGEIKKALYFHDQLVAQ-GFQLDQVSYGTLINGLCKTGETKAVAR 183
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ L KPD +YNTI+
Sbjct: 184 LLRKLEGHSVKPDVVMYNTII 204
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+++Y L+ LCK L ++ A G N+ YT+LI+ +C
Sbjct: 401 QGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAK-GYHLNVHAYTVLINRLCKAGFFD 459
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L S + D G PD ++ I++
Sbjct: 460 EALDLKSKMEDKGCMPDAVTFDIIIRA 486
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 19/94 (20%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR---------ASLGIKPNLVTYTILIDNV 56
+ PD+FTYN SL Y VD+++ A G+ P++ YT +I+ +
Sbjct: 298 IKPDVFTYN----------SLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGL 347
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C TK + EAM L + PD YN+++ G
Sbjct: 348 CKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDG 381
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP F +N ++ L + TV + Q + GI P+L T +ILI+ C+ ++ A
Sbjct: 54 PPPTFHFNNILSSLVNNKHYPTVISLFKQFEPN-GITPDLCTLSILINCFCHQAHITLAF 112
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + + GF P+ NT++KG
Sbjct: 113 SVFANILKRGFHPNAITLNTLIKG 136
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + D +Y L+ LCK V + ++ +KP++V Y +I+++C K
Sbjct: 153 LVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGH-SVKPDVVMYNTIINSLCKNK 211
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L +A + S + G PD Y T++ G+
Sbjct: 212 LLGDACDVYSEMIVKGISPDVVTYTTLIHGF 242
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 2 IFKQ-----LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDN 55
+FKQ + PD+ T + L+ C C +T ++ F + ++ G PN +T LI
Sbjct: 79 LFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKR--GFHPNAITLNTLIKG 136
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C +++A+ L GF+ D Y T++ G
Sbjct: 137 LCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLING 171
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFT+ L+ C + + V+QM +GIKP++V YT +ID++C ++ A+
Sbjct: 139 PDIFTFTSLINGFCLGNRIEEAMSMVNQM-VEMGIKPDVVIYTTIIDSLCKNGHVDNALS 197
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + + G +PD +Y +++ G
Sbjct: 198 LFNQMENYGIRPDVVMYTSLVNG 220
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++T N L+ C C+ +F+ ++ LG +P++ T+T LI+ C + EAM +
Sbjct: 105 DLYTCNLLMNCFCQSSQPCLASSFLGKL-MKLGFEPDIFTFTSLINGFCLGNRIEEAMSM 163
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V+ + + G KPD +Y TI+
Sbjct: 164 VNQMVEMGIKPDVVIYTTII 183
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ Y ++ LCK + + +QM + GI+P++V YT L++ +CN+ R+A
Sbjct: 172 IKPDVVIYTTIIDSLCKNGHVDNALSLFNQME-NYGIRPDVVMYTSLVNGLCNSGRWRDA 230
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + KPD +N ++ +
Sbjct: 231 DLLLRGMMKRKIKPDVITFNALIDAF 256
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ T+N L+ K L ++M + I PN+ TYT LI+ +C L
Sbjct: 240 RKIKPDVITFNALIDAFVKEGKLLDAKELYNEM-IQMSIAPNIFTYTSLINGLCMEGRLD 298
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G PD Y +++ G+
Sbjct: 299 EARQMFYLMETKGCFPDVVAYTSLINGF 326
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+IFTY L+ LC L M G P++V YT LI+ C K
Sbjct: 272 MIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETK-GCFPDVVAYTSLINGFCKCK 330
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +AM++ +S G + Y T+++G+
Sbjct: 331 KVEDAMKIFYEMSQKGLTGNTITYTTLIQGF 361
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCN 58
++ + +PP+I TYN L+ CLC + + M R G+ PN+ TY +L+ +C
Sbjct: 377 MVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCY 436
Query: 59 TKNLREAM 66
L +A+
Sbjct: 437 NGKLEKAL 444
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y L+ CKC+ + +M + G+ N +TYT LI A
Sbjct: 314 PDVVAYTSLINGFCKCKKVEDAMKIFYEM-SQKGLTGNTITYTTLIQGFGLVGKPNVAQE 372
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + G P+ YN ++
Sbjct: 373 VFGHMVSRGVPPNIRTYNVLLH 394
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y LV LC + M IKP+++T+ LID L +A
Sbjct: 209 PDVVMYTSLVNGLCNSGRWRDADLLLRGMMKR-KIKPDVITFNALIDAFVKEGKLLDAKE 267
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + P+ F Y +++ G
Sbjct: 268 LYNEMIQMSIAPNIFTYTSLING 290
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I + L+ + K + V N ++ +G+ +L T +L++ C + A
Sbjct: 69 PSIIDFTRLLNVIAKMKKFDVVINLCKHLQI-MGVSNDLYTCNLLMNCFCQSSQPCLASS 127
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L GF+PD F + +++ G+
Sbjct: 128 FLGKLMKLGFEPDIFTFTSLINGF 151
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVD-QMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD+ TYN +++ LC L +D QM+ P+++TYTILI+ CN + +
Sbjct: 205 VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRE--CYPDVITYTILIEATCNDSGVGQ 262
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
AM+L+ + G KPD YN ++ G
Sbjct: 263 AMKLLDEMRKKGCKPDVVTYNVLING 288
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ C + +D+MR G KP++VTY +LI+ +C L EA++
Sbjct: 242 PDVITYTILIEATCNDSGVGQAMKLLDEMRKK-GCKPDVVTYNVLINGICKEGRLDEAIK 300
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + G +P+ +N I++
Sbjct: 301 FLNNMPLYGCQPNVITHNIILR 322
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK ++Q+ +S G P L+TY +ID + A
Sbjct: 417 PDIVTYNTLLTALCKDGKADAAVEILNQL-SSKGCSPVLITYNTVIDGLTKVGKTEYAAE 475
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G KPD Y+T+++G
Sbjct: 476 LLEEMRRKGLKPDIITYSTLLRG 498
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TYN L+ +CK L F++ M G +PN++T+ I++ ++C+T
Sbjct: 273 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PLYGCQPNVITHNIILRSMCSTGRWM 331
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A RL++ + G P +N ++
Sbjct: 332 DAERLLADMLRKGCSPSVVTFNILI 356
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ CK + +++M + P++VTY ++ ++C++ L+EAM
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQVLERM----SVAPDVVTYNTILRSLCDSGKLKEAME 230
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ PD Y +++
Sbjct: 231 VLDRQMQRECYPDVITYTILIEA 253
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + T+N L+ LC+ R L + +++M G PN ++Y L+ C K
Sbjct: 340 MLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKM-PKHGCMPNSLSYNPLLHGFCQEK 398
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YNT++
Sbjct: 399 KMDRAIEYLEIMVSRGCYPDIVTYNTLL 426
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K P + TYN ++ L K +++MR G+KP+++TY+ L+ +
Sbjct: 445 LSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRK-GLKPDIITYSTLLRGLGCEG 503
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+++ + KP YN IM G
Sbjct: 504 KVDEAIKIFHDMEGLSIKPSAVTYNAIMLG 533
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+ +++P P+ +YN L+ C+ + + +++ M S G P++VTY L+ +
Sbjct: 371 VLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIM-VSRGCYPDIVTYNTLLTAL 429
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C A+ +++ LS G P YNT++ G
Sbjct: 430 CKDGKADAAVEILNQLSSKGCSPVLITYNTVIDG 463
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ T+N +++ +C R + D +R G P++VT+ ILI+ +C + L A+
Sbjct: 312 PNVITHNIILRSMCSTGRWMDAERLLADMLRK--GCSPSVVTFNILINFLCRKRLLGRAI 369
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P+ YN ++ G+
Sbjct: 370 DVLEKMPKHGCMPNSLSYNPLLHGF 394
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCL-CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L PDI TY+ L++ L C+ + + F D L IKP+ VTY ++ +C +
Sbjct: 483 KGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDM--EGLSIKPSAVTYNAIMLGLCKAQQT 540
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + + G KP Y +++G
Sbjct: 541 SRAIDFLAYMVEKGCKPTKATYTILIEG 568
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
F N ++ L + L F+++M G P+++ T LI C + R+A R++
Sbjct: 108 FASNIHLRKLVRNGELEEGLKFLERM-IYQGDIPDVIACTSLIRGFCRSGKTRKATRIME 166
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
L +SG PD YN ++ GY
Sbjct: 167 ILENSGAVPDVITYNVLIGGY 187
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I++ PD+ L++ C+ ++ + S G P+++TY +LI C +
Sbjct: 133 MIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENS-GAVPDVITYNVLIGGYCKSG 191
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +A++++ +S PD YNTI++
Sbjct: 192 EIDKALQVLERMS---VAPDVVTYNTILR 217
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
+ P TYN ++ LCK + + +F+ M G KP TYTILI+ + +
Sbjct: 520 IKPSAVTYNAIMLGLCKAQQTSRAIDFLAYM-VEKGCKPTKATYTILIEGIAD 571
>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ P++ T N LV +CK ++T F M+ G+K N VTYT+ I+ CN N+ +
Sbjct: 293 QIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQK-GLKGNNVTYTVFINAFCNVNNMNK 351
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
AM + +S G PD VY T++ G
Sbjct: 352 AMEFLDEMSKDGCFPDAVVYYTLICG 377
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ K + + F+ +M G+ P + TY LI C N+ EA
Sbjct: 434 VKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEA 493
Query: 66 MRLVSALSDSGFK--PDCFVYNTIM 88
+++ +++ K P+ +YN ++
Sbjct: 494 IKIFKEMNNVASKVPPNTVIYNILI 518
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-ASLGIKPNLVTYTILIDNVCNTKNL 62
+ L P +FTY L+ C ++ +M + + PN V Y ILID++C +
Sbjct: 468 EGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQV 527
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + G P+ YN+I K
Sbjct: 528 NFALSLLDDMKFRGVMPNTTTYNSIFKA 555
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN L+ CK L ++++M + G+KP+ VTY LI N + A +
Sbjct: 402 DRVCYNVLISEFCKKNKLDRAQEWLNEMELA-GVKPDSVTYNTLISYFSKIGNFKLAHKF 460
Query: 69 VSALS-DSGFKPDCFVYNTIMKGY 91
+ ++ + G P F Y ++ Y
Sbjct: 461 MKKMTEEEGLSPTVFTYGALIHAY 484
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS-----LGIKPNLVTYTILIDNVCNTK 60
+ P + T+ L+ LCK R + ++M+ + + P+ + Y LID +C
Sbjct: 183 IQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVG 242
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L+ + P +N ++ GY
Sbjct: 243 RQEEALCLMGKMRSDQCAPTTATFNCLINGY 273
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q P T+N L+ C+ + + ++M + I+PN++T L+D +C +
Sbjct: 258 QCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQ-IEPNVITLNTLVDGMCKHNRIST 316
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ + G K + Y + +
Sbjct: 317 AVEFFRVMQQKGLKGNNVTYTVFINAF 343
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+ ++PP+ YN L+ LCK + + +D M+ G+ PN TY + + +
Sbjct: 503 VASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFR-GVMPNTTTYNSIFKALRDKNW 561
Query: 62 LREAMRLVSALSDSGFKPD 80
L +A +L+ + + PD
Sbjct: 562 LDKAFKLMDRMVEQACNPD 580
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ L + L + V +++ + G + V Y +LI C L A
Sbjct: 366 PDAVVYYTLICGLAQAGRLDDASSVVSKLKEA-GFCLDRVCYNVLISEFCKKNKLDRAQE 424
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + +G KPD YNT++
Sbjct: 425 WLNEMELAGVKPDSVTYNTLI 445
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L K R + + +M+ + I+P ++T+ ILI+++C + + +A+ + +
Sbjct: 156 NALLTGLGKAREFGKMNLLMRKMK-DMNIQPTVITFGILINHLCKFRRIDDALEVFEKMK 214
Query: 74 DSGFK------PDCFVYNTIMKG 90
+ PD +YNT++ G
Sbjct: 215 GEKEETKVFVAPDTIMYNTLIDG 237
>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
Length = 526
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN +V C F+ +MR+ G++P++VTY L+D +C EA +
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 207
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KPD Y T+++GY
Sbjct: 208 IFDSMTKRGLKPDITTYGTLLQGY 231
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y+ ++ K L + +DQ I PN+VTY +I +C + + +AM
Sbjct: 85 PPDVVSYSTVINGFFKEGDLDKM---LDQR-----ISPNVVTYNSIIAALCKAQTVDKAM 136
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + SG PDC YN+I+ G+
Sbjct: 137 EVLTTMVKSGVMPDCMTYNSIVHGF 161
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TYN ++ LCK +++ + M S G+ P+ +TY ++ C++
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-GVMPDCMTYNSIVHGFCSSG 165
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 166 QPKEAIVFLKKMRSDGVEPDVVTYNSLM 193
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ + ++ LV K + +MR G+ PN VTY +ID +C + + +AM
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ-GLNPNAVTYGTVIDVLCKSGRVEDAML 312
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ D G +PD VYN+++
Sbjct: 313 YFEQMIDEGLRPDSIVYNSLI 333
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK T D M G+KP++ TY L+ L E
Sbjct: 184 PDVVTYNSLMDYLCKNGRCTEARKIFDSM-TKRGLKPDITTYGTLLQGYATKGALVEMHG 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 243 LLDLMVRNGIHPNHYVFSILVCAY 266
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ +L ++ +D M + GI PN ++IL+ + +
Sbjct: 215 RGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVE 273
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM + S + G P+ Y T++
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVI 298
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSG--FKPDCFVYNTIMKGY 91
P++ +Y IL++ +C+ +EA+ L+ ++D G PD Y+T++ G+
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGF 98
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY ++ LCK + + +QM G++P+ + Y LI ++C +A
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-IDEGLRPDSIVYNSLIHSLCIFDKWEKA 345
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + D G +N+I+ +
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSH 371
>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T+N +++ L + + + F + M+A G P++ +YTILI ++C ++EA+
Sbjct: 276 PDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAK-GPSPDVRSYTILIRDLCKQTKMKEAVG 334
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ DSG PD VY +M GY
Sbjct: 335 YFYEMVDSGCHPDAAVYTCLMTGY 358
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
PNL TYT+L++ C KNL EA R+ + + D GFKPD +N +++G
Sbjct: 241 PNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEG 287
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y L++ LCK + + +M S G P+ YT L+ N K +
Sbjct: 311 PDVRSYTILIRDLCKQTKMKEAVGYFYEMVDS-GCHPDAAVYTCLMTGYGNHKRMDMVYE 369
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G PD YN ++K
Sbjct: 370 LLKEMKEKGCPPDGKTYNALIK 391
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ + + VY + +M+ G P+ TY LI + + + +A+R
Sbjct: 346 PDAAVYTCLMTGYGNHKRMDMVYELLKEMKEK-GCPPDGKTYNALIKLMTSQRMPDDAVR 404
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G +P YN IMK Y
Sbjct: 405 IYKKMIQNGIEPSIHSYNMIMKSY 428
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PPD TYN L+K + R +M + GI+P++ +Y +++ + +N
Sbjct: 377 KGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQN-GIEPSIHSYNMIMKSYFRIRNYE 435
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +S GF PD Y + G
Sbjct: 436 MGHAVWDEMSKKGFCPDDNSYTVFIGG 462
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK + + ++ M+ G++PN+VTY+ LID C L EA +
Sbjct: 319 PDVITYNSLINCFCKFERIPQAFEYLHGMKQR-GLQPNVVTYSTLIDAFCKAGMLLEANK 377
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ G +P+ F Y +++
Sbjct: 378 FFVDMIRVGLQPNEFTYTSLI 398
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P +FTYN ++ CL + L + ++M+A G++P++VTY LID
Sbjct: 242 MVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAK-GLRPDIVTYNSLIDGYGKVG 300
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L A+ + + D+G +PD YN+++ +
Sbjct: 301 MLTGAVSVFEEMKDAGCEPDVITYNSLINCF 331
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TY L+ LCK + + D M + G++PN++ YT LID +C L EA L
Sbjct: 566 VVTYGVLIDGLCKIGLVQQAVRYFDHMTRN-GLQPNIMIYTALIDGLCKNDCLEEAKNLF 624
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ + D G PD VY +++ G
Sbjct: 625 NEMLDKGISPDKLVYTSLIDG 645
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ FTY L+ CK L + +M+ + G+ N+VTYT L+D +C +REA
Sbjct: 387 LQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQA-GVNLNIVTYTALLDGLCEDGRMREA 445
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L AL +G+ + +Y ++ GY
Sbjct: 446 EELFGALLKAGWTLNQQIYTSLFHGY 471
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L P++ TY+ L+ CK L F VD +R +G++PN TYT LID C +L
Sbjct: 350 RGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIR--VGLQPNEFTYTSLIDANCKIGDL 407
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L S + +G + Y ++ G
Sbjct: 408 NEAFKLESEMQQAGVNLNIVTYTALLDG 435
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI TYN L+ K LT + ++M+ + G +P+++TY LI+ C + +
Sbjct: 280 KGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDA-GCEPDVITYNSLINCFCKFERIP 338
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + + G +P+ Y+T++ +
Sbjct: 339 QAFEYLHGMKQRGLQPNVVTYSTLIDAF 366
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L + + Y L+ K T N + +M+ LGIK +VTY +LID +C +++A
Sbjct: 527 LTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQ-DLGIKITVVTYGVLIDGLCKIGLVQQA 585
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+R ++ +G +P+ +Y ++ G
Sbjct: 586 VRYFDHMTRNGLQPNIMIYTALIDG 610
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I Y L+ LCK L N ++M GI P+ + YT LID N EA
Sbjct: 597 LQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDK-GISPDKLVYTSLIDGNMKHGNPGEA 655
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + + + G + D Y +++ G+
Sbjct: 656 LSLRNRMVEIGMELDLCAYTSLIWGF 681
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + + N L+ L K +F M + G+ P++ TY ++I + +L A
Sbjct: 214 PKVRSCNELLHRLSKSSKGGLALSFFKDMVVA-GLSPSVFTYNMVIGCLAREGDLEAARS 272
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G +PD YN+++ GY
Sbjct: 273 LFEEMKAKGLRPDIVTYNSLIDGY 296
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ Y + LC+ + + +M G+ N YT LID
Sbjct: 490 KNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREM-MDCGLTANSYIYTTLIDAYFKVGKTT 548
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ + D G K Y ++ G
Sbjct: 549 EAVNLLQEMQDLGIKITVVTYGVLIDG 575
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y L K + + + +++M +KP+L+ Y I +C + ++M ++ +
Sbjct: 464 YTSLFHGYIKAKMMEKAMDILEEMNKK-NLKPDLLLYGTKIWGLCRQNEIEDSMAVIREM 522
Query: 73 SDSGFKPDCFVYNTIMKGY 91
D G + ++Y T++ Y
Sbjct: 523 MDCGLTANSYIYTTLIDAY 541
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I TY+ L+ LCK + V++ +D+M G N++TY+ LID +C +L
Sbjct: 368 KNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMH-DRGQPANVITYSSLIDGLCKNGHLD 426
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + + D G +P+ F + ++ G
Sbjct: 427 RAIALFNKMKDQGIRPNTFTFTILLDG 453
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ TY+ L+ LCK L ++M+ GI+PN T+TIL+D +C L++A
Sbjct: 406 PANVITYSSLIDGLCKNGHLDRAIALFNKMKDQ-GIRPNTFTFTILLDGLCKGGRLKDAQ 464
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ L G+ + + YN ++ G+
Sbjct: 465 EVFQDLLTKGYHLNVYTYNVMIDGH 489
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + D+ TY+ L+ C L +++M I PN+ TY IL+D +C
Sbjct: 225 MTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT-INPNVYTYNILVDALCKEG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + + KPD Y+T+M GY
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+++TYN LV LCK + + + M + +KP+++TY+ L+D
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVITYSTLMDGYFLVY 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A + +A+S G PD Y ++ G+
Sbjct: 319 EVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD T N L+K LC + +F D++ A G + N V+Y LI+ VC + R A+
Sbjct: 126 PPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ-GFQLNQVSYGTLINGVCKIGDTRAAI 184
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L+ + KP+ +Y+TI+
Sbjct: 185 KLLQKIDGRLTKPNVVMYSTII 206
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L+ LC + +F D++ A G + N V+Y LI+ VC + R A++
Sbjct: 994 PDTITFTTLINGLCLKGQVNKALHFHDKLLAQ-GFQLNQVSYGTLINGVCKIGDTRAAIK 1052
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + KPD +YNTI+
Sbjct: 1053 LLRKIDGRLTKPDVVMYNTII 1073
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+FT N L+ C C +T ++ + ++ G P+ +T+T LI+ +C
Sbjct: 952 LELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKR-GYHPDTITFTTLINGLCLKG 1010
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L GF+ + Y T++ G
Sbjct: 1011 QVNKALHFHDKLLAQGFQLNQVSYGTLING 1040
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN ++ LCK + ++ Y +M GI ++VTY LI C L+EA+
Sbjct: 1064 PDVVMYNTIIDALCKHQLVSKAYGLFFEMNVK-GISADVVTYNTLIYGFCIVGKLKEAIG 1122
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + P+ YN ++
Sbjct: 1123 LLNKMVLKTINPNVRTYNILV 1143
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FT+ L+ LCK L V Q + G N+ TY ++ID C L EA+
Sbjct: 442 PNTFTFTILLDGLCKGGRLKDAQE-VFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALT 500
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++S + D+G PD + I+
Sbjct: 501 MLSKMEDNGCIPDAVTFEIII 521
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN-- 61
K + D+ TYN L+ C L +++M I PN+ TY IL+D +C
Sbjct: 1095 KGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKT-INPNVRTYNILVDALCKEGKDL 1153
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
L E++ ++S + D+G K + + I+
Sbjct: 1154 LDESLSMLSKMEDNGCKANAVTFEIII 1180
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + PP I +N ++ K + +T + ++ GI+P+L+T ILI+ C+
Sbjct: 51 LCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELK-GIQPDLITLNILINCFCHMG 108
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +++ + G+ PD NT++KG
Sbjct: 109 QITFGFSVLAKILKRGYPPDTVTLNTLIKG 138
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T N L+ C C +T ++ + ++ G P+ VT LI +C
Sbjct: 85 LELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKR-GYPPDTVTLNTLIKGLCLKG 143
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ L GF+ + Y T++ G
Sbjct: 144 QVKKALHFHDKLLAQGFQLNQVSYGTLING 173
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ +CK + ++ L KP++V Y +ID +C + + +A L
Sbjct: 1033 SYGTLINGVCKIGDTRAAIKLLRKIDGRL-TKPDVVMYNTIIDALCKHQLVSKAYGLFFE 1091
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
++ G D YNT++ G+
Sbjct: 1092 MNVKGISADVVTYNTLIYGF 1111
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN +V CLCK L ++QM G P++ T+ LI +C L EA+
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQM-VDRGCLPDITTFNTLIAALCTGNRLEEALD 377
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ G PD + +N ++
Sbjct: 378 LARQVTVKGVSPDVYTFNILI 398
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD++T+N L+ LCK ++M+ S G P+ VTY LIDN+C+ L
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS-GCTPDEVTYNTLIDNLCSLGKLG 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ + +G YNTI+ G
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDG 470
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN ++ LCK + DQM GI N +T+ LID +C K + +A
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKKIDDAF 516
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G +P+ YN+I+ Y
Sbjct: 517 ELINQMISEGLQPNNITYNSILTHY 541
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ LCK + + + ++QM S G++PN +TY ++ + C ++++A ++
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQM-ISEGLQPNNITYNSILTHYCKQGDIKKAADILET 556
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +GF+ D Y T++ G
Sbjct: 557 MTANGFEVDVVTYGTLING 575
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 1 LIFKQLPP------DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
LI QL P D YN L+ L + + + + +M A GIKP++VT+ L+
Sbjct: 131 LILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGAR-GIKPDVVTFNTLMK 189
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C +R A+ ++ +S G PD + T+M+G+
Sbjct: 190 ALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 226
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN V LC+ + +D M G P++ TY I+++ +C L EA
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + D G PD +NT++
Sbjct: 343 ILNQMVDRGCLPDITTFNTLI 363
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ T+N L+K LC+ + T +++M +S G+ P+ T+T L+ ++
Sbjct: 175 RGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM-SSRGVAPDETTFTTLMQGFVEEGSIE 233
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+R+ + + + G N ++ GY
Sbjct: 234 AALRVKARMLEMGCSATKVTVNVLINGY 261
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ CK + ++ Q A G +P+ +TY ++ +C ++ A++++
Sbjct: 253 TVNVLINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311
Query: 72 LSDSGFKPDCFVYNTIM 88
+ G PD F YN ++
Sbjct: 312 MVQEGHDPDVFTYNIVV 328
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC L + + M S G + +TY +ID +C + EA
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDME-STGCPRSTITYNTIIDGLCKKMRIEEAEE 482
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + +NT++ G
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDG 505
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L+ LCK + MR G++P Y ++ ++ N+R+A+ L
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLRGMRIK-GMRPTPKAYNPVLQSLFRRNNIRDALSL 623
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ G PD Y + +G
Sbjct: 624 FREMAEVGEPPDALTYKIVFRG 645
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ TYN ++ CK + + ++ M A+ G + ++VTY LI+ +C
Sbjct: 522 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAG 580
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A++++ + G +P YN +++
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQ 609
>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 712
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDN 55
IFK++ PD+ TYN ++ LC+ + +N ++ M + + + PN+V+YT L+
Sbjct: 234 IFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRG 293
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + + EA+ + + G KP+ YNT++KG
Sbjct: 294 YCMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKG 328
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K ++ D+MR + G+ P+ T+ LI C + +A
Sbjct: 172 ISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQA 231
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + PD YNTI+ G
Sbjct: 232 FTIFKEMELYSCNPDVVTYNTIIDG 256
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ TYN L+K L + + F+ A P+ T+ ILI C+
Sbjct: 310 MLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAG 369
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+L AM++ + + PD Y+ +++
Sbjct: 370 HLDAAMKVFQEMLNMKLHPDSASYSVLIR 398
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 36/121 (29%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT--------------- 50
L P+ TYN LV LCK +S+ +N V QM AS G++P++VTY
Sbjct: 194 LKPNNRTYNILVGALCKKKSIKEAWNVVHQMLAS-GVQPDVVTYNTLARAYAQDGETNKA 252
Query: 51 --------------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
I++ C NL EA+R+V + D G P+ ++N+++KG
Sbjct: 253 ESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKG 312
Query: 91 Y 91
+
Sbjct: 313 F 313
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T+N L+K R ++ M + +KPN TY IL+ +C K+++EA
Sbjct: 160 PTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWN 219
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + SG +PD YNT+ + Y
Sbjct: 220 VVHQMLASGVQPDVVTYNTLARAY 243
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TY LV L + + + + +M + GIKP+ + +I+ + N++EAM
Sbjct: 90 PTTVTYTALVAALTRQKRFKAISGLLSEMEET-GIKPDSILLNAIINAFSESGNVKEAME 148
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +SG KP +NT++KGY
Sbjct: 149 IFQKMEESGCKPTTSTFNTLIKGY 172
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P+ T +V C+ +L V +MR LGI PNLV + LI +
Sbjct: 259 MLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMR-DLGIHPNLVIFNSLIKGFLDIG 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + ++ + +SG KPD ++TIM G+
Sbjct: 318 DSDGVDKALTMMEESGVKPDVITFSTIMNGW 348
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI ++ L K + + ++ M + G++PN+V +T +I C + +A
Sbjct: 369 IEPDIHVFSILAKGFVRAGEPVKAESLLNFM-SKYGVRPNVVIFTTIISGWCTAGKMEKA 427
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + D P+ + T++ GY
Sbjct: 428 WKVFEHMCDMDVSPNLKTFETLIWGY 453
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G +P VTYT L+ + K + L+S + ++G KPD + N I+ +
Sbjct: 87 GHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAF 137
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +N L+K V + M S G+KP+++T++ +++ + + +
Sbjct: 301 PNLVIFNSLIKGFLDIGDSDGVDKALTMMEES-GVKPDVITFSTIMNGWSSAGRMDKCQE 359
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + SG +PD V++ + KG+
Sbjct: 360 IFDDMLKSGIEPDIHVFSILAKGF 383
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN +V CLCK L ++QM G P++ T+ LI +C L EA+
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQM-VDRGCLPDITTFNTLIAALCTGNRLEEALD 377
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ G PD + +N ++
Sbjct: 378 LARQVTVKGVSPDVYTFNILI 398
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD++T+N L+ LCK ++M+ S G P+ VTY LIDN+C+ L
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS-GCTPDEVTYNTLIDNLCSLGKLG 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ + +G YNTI+ G
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDG 470
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN ++ LCK + DQM GI N +T+ LID +C K + +A
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKKIDDAF 516
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G +P+ YN+I+ Y
Sbjct: 517 GLINQMISEGLQPNNITYNSILTHY 541
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ LCK + + + ++QM S G++PN +TY ++ + C ++++A ++
Sbjct: 498 TFNTLIDGLCKDKKIDDAFGLINQM-ISEGLQPNNITYNSILTHYCKQGDIKKAADILET 556
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +GF+ D Y T++ G
Sbjct: 557 MTANGFEVDVVTYGTLING 575
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 1 LIFKQLPP------DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
LI QL P D YN L+ L + + + + +M A GIKP++VT+ L+
Sbjct: 131 LILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGAR-GIKPDVVTFNTLMK 189
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C +R A+ ++ +S G PD + T+M+G+
Sbjct: 190 ALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 226
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN V LC+ + +D M G P++ TY I+++ +C L EA
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + D G PD +NT++
Sbjct: 343 ILNQMVDRGCLPDITTFNTLI 363
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ T+N L+K LC+ + T +++M +S G+ P+ T+T L+ ++
Sbjct: 175 RGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM-SSRGVAPDETTFTTLMQGFVEEGSIE 233
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+R+ + + + G N ++ GY
Sbjct: 234 AALRVKARMLEMGCSATKVTVNVLINGY 261
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ CK + ++ Q A G +P+ +TY ++ +C ++ A++++
Sbjct: 253 TVNVLINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311
Query: 72 LSDSGFKPDCFVYNTIM 88
+ G PD F YN ++
Sbjct: 312 MVQEGHDPDVFTYNIVV 328
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC L + + M S G + +TY +ID +C + EA
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDME-STGCPRSTITYNTIIDGLCKKMRIEEAEE 482
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + +NT++ G
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDG 505
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L+ LCK + MR G++P Y ++ ++ N+R+A+ L
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLRGMRIK-GMRPTPKAYNPVLQSLFRRNNIRDALSL 623
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ G PD Y + +G
Sbjct: 624 FREMAEVGEPPDALTYKIVFRG 645
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ TYN ++ CK + + ++ M A+ G + ++VTY LI+ +C
Sbjct: 522 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAG 580
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A++++ + G +P YN +++
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQ 609
>gi|260780548|gb|ACX50820.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 183
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + N+ +
Sbjct: 4 QVPPHAFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGNVED 60
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD ++ ++ G
Sbjct: 61 AIRLLHRMIDEGFKPDVVTFSVVVNG 86
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T++ +V LCK + ++ + + G+ N + Y+ LID +
Sbjct: 68 MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFN-GLAINSMFYSSLIDGLGKAG 126
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 127 RIDEAERLFEEMSEKGCTRDSYCYNALIDAF 157
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K ++ + +M G KP++VT++++++ +C
Sbjct: 33 MIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRM-IDEGFKPDVVTFSVVVNGLCKNG 91
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 92 RVEEALDYFQTCQFNGLAINSMFYSSLIDG 121
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P IFTY L++ LC +++M SL I PN+VT+ +L+D C +
Sbjct: 144 KDISPTIFTYTSLIQGLCNFSRWKEASALLNEM-TSLNIMPNVVTFNVLVDTFCKEGKVL 202
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ +++ G +PD YN++M GY
Sbjct: 203 AAEGVLKTMTEMGVEPDVVTYNSLMYGY 230
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ YN LV +CK +L ++ +G++PN+ YT +I+ +C L EA
Sbjct: 356 LKPNLVMYNILVNAMCKSGNLKDARELFSELFV-IGLQPNVQIYTTIINGLCKEGLLDEA 414
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G PD F YN I++G+
Sbjct: 415 LEAFRNMEDDGCPPDEFSYNVIIRGF 440
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY L+ CK L + M+++ +KPNLV Y IL++ +C + NL++A
Sbjct: 323 PNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTY-LKPNLVMYNILVNAMCKSGNLKDARE 381
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L G +P+ +Y TI+ G
Sbjct: 382 LFSELFVIGLQPNVQIYTTIING 404
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD+F+Y+ L+ CK + + ++M G PN V+Y LI +C
Sbjct: 246 MITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEM-IHQGSTPNNVSYNTLIHGLCQLG 304
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA L + +G P+ + Y ++ G+
Sbjct: 305 RLREAQDLFKNMHTNGNLPNLYTYAILLDGF 335
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ +YN L+ LC+ L + M + G PNL TY IL+D C
Sbjct: 281 MIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTN-GNLPNLYTYAILLDGFCKQG 339
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A RL A+ + KP+ +YN ++
Sbjct: 340 YLGKAFRLFRAMQSTYLKPNLVMYNILV 367
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ + D M + G KP++ +Y+ILI+ C K + EA
Sbjct: 216 VEPDVVTYNSLMYGYSMWTEVVEARKLFDVM-ITKGCKPDVFSYSILINGYCKAKRIDEA 274
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G P+ YNT++ G
Sbjct: 275 KQLFNEMIHQGSTPNNVSYNTLIHG 299
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T N L+ C C+ + + ++ + + LG++P +VT+T LI+ + +A
Sbjct: 6 LSPNTCTLNILINCFCQLQRVDLGFSVLAK-GIKLGLQPTIVTFTTLINGLGKVGKFAQA 64
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G +PD + Y TI+ G
Sbjct: 65 VELFDDMVARGCQPDDYTYTTIING 89
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD +TY ++ LCK +M + G + N+VTY+ LI ++C +
Sbjct: 71 MVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEA-GCQLNVVTYSTLIHSLCKYR 129
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + S + P F Y ++++G
Sbjct: 130 RVNEALDIFSYMKAKDISPTIFTYTSLIQG 159
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N LV CK + + M +G++P++VTY L+ + EA +
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTM-TEMGVEPDVVTYNSLMYGYSMWTEVVEARK 241
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KPD F Y+ ++ GY
Sbjct: 242 LFDVMITKGCKPDVFSYSILINGY 265
>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
Length = 676
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ C+ L + ++ ++ G+ P+LV+YT L++ +C +REA +
Sbjct: 336 PDIVTYNTLINSYCRKGRLDDAF-YLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQ 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YNT++ GY
Sbjct: 395 LFHRMVHRGLSPDIVTYNTLIHGY 418
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+++T+N L LCK V F+++M G P++VTY LI++ C L +A
Sbjct: 299 IAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEE-GFDPDIVTYNTLINSYCRKGRLDDA 357
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD Y +M G
Sbjct: 358 FYLYKIMYRRGVVPDLVSYTALMNG 382
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y L+ LCK + + +M G+ P++VTY LI C ++E+
Sbjct: 371 PDLVSYTALMNGLCKEGRVREAHQLFHRM-VHRGLSPDIVTYNTLIHGYCKEGKMQESRS 429
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD F +++GY
Sbjct: 430 LLHDMIWNGISPDSFTCWVLVEGY 453
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T N+L+ L K + ++M GI PNL T+ IL +C + + +
Sbjct: 266 PTVITSNYLLNGLLKLNYTDRCWEVYEEME-RFGIAPNLYTFNILTHVLCKDGDTGKVNK 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + GF PD YNT++ Y
Sbjct: 325 FLEKMEEEGFDPDIVTYNTLINSY 348
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ YN L+K C+C + +M IKPNL TY +J + E L
Sbjct: 512 ELEIYNELIKSFCQCDCIAEALLLKMEM-VDKEIKPNLATYRAVJGCLSRLSRSMEGESL 570
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
V + SG PD + + GY
Sbjct: 571 VGEMVASGXLPDLEICRALFYGY 593
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN +V CLCK L ++QM G P++ T+ LI +C L EA+
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQM-VDRGCLPDITTFNTLIAALCTGNRLEEALD 377
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ G PD + +N ++
Sbjct: 378 LARQVTVKGVSPDVYTFNILI 398
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD++T+N L+ LCK ++M+ S G P+ VTY LIDN+C+ L
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS-GCTPDEVTYNTLIDNLCSLGKLG 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ + +G YNTI+ G
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDG 470
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN ++ LCK + DQM GI N +T+ LID +C K + +A
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKKIDDAF 516
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G +P+ YN+I+ Y
Sbjct: 517 ELINQMISEGLQPNNITYNSILTHY 541
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ LCK + + + ++QM S G++PN +TY ++ + C ++++A ++
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQM-ISEGLQPNNITYNSILTHYCKQGDIKKAADILET 556
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +GF+ D Y T++ G
Sbjct: 557 MTANGFEVDVVTYGTLING 575
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 1 LIFKQLPP------DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
LI QL P D YN L+ L + + + + +M A GIKP++VT+ L+
Sbjct: 131 LILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGAR-GIKPDVVTFNTLMK 189
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C +R A+ ++ +S G PD + T+M+G+
Sbjct: 190 ALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGF 226
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN V LC+ + +D M G P++ TY I+++ +C L EA
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + D G PD +NT++
Sbjct: 343 ILNQMVDRGCLPDITTFNTLI 363
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ T+N L+K LC+ + T +++M +S G+ P+ T+T L+ ++
Sbjct: 175 RGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEM-SSRGVAPDETTFTTLMQGFVEEGSIE 233
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+R+ + + + G N ++ GY
Sbjct: 234 AALRVKARMLEMGCSATKVTVNVLINGY 261
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ CK + ++ Q A G +P+ +TY ++ +C ++ A++++
Sbjct: 253 TVNVLINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311
Query: 72 LSDSGFKPDCFVYNTIM 88
+ G PD F YN ++
Sbjct: 312 MVQEGHDPDVFTYNIVV 328
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC L + + M S G + +TY +ID +C + EA
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDME-STGCPRSTITYNTIIDGLCKKMRIEEAEE 482
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + +NT++ G
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDG 505
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L+ LCK + MR G++P Y ++ ++ N+R+A+ L
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLRGMRIK-GMRPTPKAYNPVLQSLFRRNNIRDALSL 623
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ G PD Y + +G
Sbjct: 624 FREMAEVGEPPDALTYKIVFRG 645
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ TYN ++ CK + + ++ M A+ G + ++VTY LI+ +C
Sbjct: 522 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAG 580
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A++++ + G +P YN +++
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQ 609
>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ C+ L + ++ ++ G+ P+LV+YT L++ +C +REA +
Sbjct: 291 PDIVTYNTLINSYCRKGRLDDAF-YLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQ 349
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YNT++ GY
Sbjct: 350 LFHRMVHRGLSPDIVTYNTLIHGY 373
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+++T+N L LCK V F+++M G P++VTY LI++ C L +A
Sbjct: 254 IAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEE-GFDPDIVTYNTLINSYCRKGRLDDA 312
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD Y +M G
Sbjct: 313 FYLYKIMYRRGVVPDLVSYTALMNG 337
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y L+ LCK + + +M G+ P++VTY LI C ++E+
Sbjct: 326 PDLVSYTALMNGLCKEGRVREAHQLFHRM-VHRGLSPDIVTYNTLIHGYCKEGKMQESRS 384
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD F +++GY
Sbjct: 385 LLHDMIWNGISPDSFTCWVLVEGY 408
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T N+L+ L K + ++M GI PNL T+ IL +C + + +
Sbjct: 221 PTVITSNYLLNGLLKLNYTDRCWEVYEEME-RFGIAPNLYTFNILTHVLCKDGDTGKVNK 279
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + GF PD YNT++ Y
Sbjct: 280 FLEKMEEEGFDPDIVTYNTLINSY 303
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 8 PDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
P++ YN L+K C+C +L VD+ IKPNL TY +I +
Sbjct: 466 PELEIYNELIKSFCQCDCIAEALLLKMEMVDK-----EIKPNLATYRAVIGCLSRLSRSM 520
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E LV + SG PD + + GY
Sbjct: 521 EGESLVGEMVASGMLPDLEICRALFYGY 548
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I+ + PD FT LV+ K + N V +++ G+ + Y+ LI +C
Sbjct: 389 MIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQ-RFGVSISQDIYSYLIVALCREN 447
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ +S G KP+ +YN ++K +
Sbjct: 448 RPFAAKNLLERMSKDGHKPELEIYNELIKSF 478
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y++L+ LC+ N +++M G KP L Y LI + C + EA+ L +
Sbjct: 436 YSYLIVALCRENRPFAAKNLLERMSKD-GHKPELEIYNELIKSFCQCDCIAEALLLKMEM 494
Query: 73 SDSGFKPDCFVYNTIM 88
D KP+ Y ++
Sbjct: 495 VDKEIKPNLATYRAVI 510
>gi|260780506|gb|ACX50799.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780508|gb|ACX50800.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780510|gb|ACX50801.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780512|gb|ACX50802.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780514|gb|ACX50803.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780516|gb|ACX50804.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780518|gb|ACX50805.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780520|gb|ACX50806.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780522|gb|ACX50807.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780524|gb|ACX50808.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780526|gb|ACX50809.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780528|gb|ACX50810.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780530|gb|ACX50811.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780532|gb|ACX50812.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780534|gb|ACX50813.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780536|gb|ACX50814.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780538|gb|ACX50815.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780540|gb|ACX50816.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780542|gb|ACX50817.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780544|gb|ACX50818.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780550|gb|ACX50821.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780552|gb|ACX50822.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780554|gb|ACX50823.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780556|gb|ACX50824.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780560|gb|ACX50826.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780562|gb|ACX50827.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780564|gb|ACX50828.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780566|gb|ACX50829.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780568|gb|ACX50830.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780570|gb|ACX50831.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780572|gb|ACX50832.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780574|gb|ACX50833.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780576|gb|ACX50834.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780578|gb|ACX50835.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780580|gb|ACX50836.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780582|gb|ACX50837.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780584|gb|ACX50838.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780586|gb|ACX50839.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780588|gb|ACX50840.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780590|gb|ACX50841.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780592|gb|ACX50842.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780594|gb|ACX50843.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780596|gb|ACX50844.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780598|gb|ACX50845.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780600|gb|ACX50846.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780602|gb|ACX50847.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780604|gb|ACX50848.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780606|gb|ACX50849.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780608|gb|ACX50850.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780610|gb|ACX50851.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780612|gb|ACX50852.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780614|gb|ACX50853.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780616|gb|ACX50854.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780618|gb|ACX50855.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780620|gb|ACX50856.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780622|gb|ACX50857.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780624|gb|ACX50858.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 183
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + N+ +
Sbjct: 4 QVPPHAFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGNVED 60
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD ++ ++ G
Sbjct: 61 AIRLLHRMIDEGFKPDVVTFSVVVNG 86
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T++ +V LCK + ++ + + G+ N + Y+ LID +
Sbjct: 68 MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFN-GLAINSMFYSSLIDGLGKAG 126
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 127 RIDEAERLFEEMSEKGCTRDSYCYNALIDAF 157
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K ++ + +M G KP++VT++++++ +C
Sbjct: 33 MIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRM-IDEGFKPDVVTFSVVVNGLCKNG 91
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 92 RVEEALDYFQTCQFNGLAINSMFYSSLIDG 121
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TY L+ LCK L ++ + +M + GIKP +VTY +L++ C + +
Sbjct: 535 LKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDN-GIKPTIVTYNVLMNGFCMSGRVEGG 593
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+ + + P+ YN++MK Y
Sbjct: 594 KKLLEWMLEKNIHPNATTYNSLMKQY 619
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + TYN L+ LCK L + M A+ G+KP++ TYT LID +C + L
Sbjct: 498 KGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAA-GLKPDVYTYTTLIDALCKSGELD 556
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + D+G KP YN +M G+
Sbjct: 557 RAHDLLQEMLDNGIKPTIVTYNVLMNGF 584
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L D TY LV CK + + + M G+ PN+VTYT L D +C
Sbjct: 425 MLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTM-VQRGVAPNVVTYTALSDGLCKQG 483
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++ A L+ +S+ G + + YN+++ G
Sbjct: 484 DVQAANELLHEMSNKGLELNACTYNSLING 513
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F+ LP ++ +YN L+K LC + D+M + P++VTY ILI C
Sbjct: 253 LFQGLPDKNVCSYNILLKVLCGAGRVEDARQLFDEMASP----PDVVTYGILIHGYCALG 308
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A++L+ + G +P+ VY +++
Sbjct: 309 ELENAVKLLDDMVARGVEPNATVYTSVV 336
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TY L+ C L +D M A G++PN YT ++ +C+ + +A+
Sbjct: 291 PPDVVTYGILIHGYCALGELENAVKLLDDMVAR-GVEPNATVYTSVVALLCDKGRVSDAL 349
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+V + D VY T++ G+
Sbjct: 350 TVVEDMVHHKVILDEAVYTTVLSGF 374
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ K + P+ TYN L+K C +S T +Y + S ++PN TY ILI C
Sbjct: 600 MLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGM----CSRNVEPNENTYNILIKGHC 655
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++++EA + + + GF+ Y+ +++
Sbjct: 656 KARSMKEAQYFHNEMIEKGFRLTASSYSALIR 687
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D TY L+ LC+ L + +M A + + VTYT+L+D C +
Sbjct: 393 KGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARR-LDVDEVTYTVLVDGYCKRGKMA 451
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + + G P+ Y + G
Sbjct: 452 EAFQVHNTMVQRGVAPNVVTYTALSDG 478
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ TYN L+K CK RS+ F ++M G + +Y+ LI + K
Sbjct: 638 RNVEPNENTYNILIKGHCKARSMKEAQYFHNEM-IEKGFRLTASSYSALIRLLNKKKKFV 696
Query: 64 EAMRLVSALSDSGFKPDCFVYN 85
EA +L + GF + VYN
Sbjct: 697 EARKLFHDMRKEGFTAEPDVYN 718
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y ++ C L + + D+M+ G+ + VTYT LI+ +C L+EA ++
Sbjct: 363 DEAVYTTVLSGFCNKGDLVSARRWFDEMQRK-GLATDGVTYTTLINGLCRAGELKEAEKV 421
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D Y ++ GY
Sbjct: 422 LQEMLARRLDVDEVTYTVLVDGY 444
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD+ TY L++ CK + +D+MR G KP++VTY +LI+ +C L
Sbjct: 188 KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK-GSKPDVVTYNVLINGICKEGRLD 246
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA++ ++ + G +P+ +N I++
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILR 272
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC L +D+ + P+++TYTILI+ C + +A
Sbjct: 155 VAPDVVTYNTILRTLCDSGKLKQAMEVLDR-QLQKECYPDVITYTILIEATCKESGVGQA 213
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M+L+ + + G KPD YN ++ G
Sbjct: 214 MKLLDEMRNKGSKPDVVTYNVLING 238
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + ++Q+ +S G P L+TY +ID + A++
Sbjct: 367 PDIVTYNTLLTALCKDGKVDVAVEILNQL-SSKGCSPVLITYNTVIDGLSKVGKTERAIK 425
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G KPD Y++++ G
Sbjct: 426 LLDEMRRKGLKPDIITYSSLVSG 448
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TYN ++ L K +D+MR G+KP+++TY+ L+ + +
Sbjct: 398 KGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK-GLKPDIITYSSLVSGLSREGKVD 456
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++ L G +P+ YN+IM G
Sbjct: 457 EAIKFFHDLEGLGIRPNAITYNSIMLG 483
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TYN L+ +CK L F++ M S G +PN++T+ I++ ++C+T
Sbjct: 223 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PSYGCQPNVITHNIILRSMCSTGRWM 281
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A +L+S + G P +N ++
Sbjct: 282 DAEKLLSDMLRKGCSPSVVTFNILI 306
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I +++P P+ +YN L+ CK + + ++D M S G P++VTY L+ +
Sbjct: 321 ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM-VSRGCYPDIVTYNTLLTAL 379
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A+ +++ LS G P YNT++ G
Sbjct: 380 CKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 413
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI TY+ LV L + + F + LGI+PN +TY ++ +C ++
Sbjct: 433 KGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEG-LGIRPNAITYNSIMLGLCKSRQTD 491
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + KP Y +++G
Sbjct: 492 RAIDFLAYMISKRCKPTEATYTILIEG 518
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + T+N L+ LC+ L + +++M G PN ++Y L+ C K
Sbjct: 290 MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMH-GCTPNSLSYNPLLHGFCKEK 348
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YNT++
Sbjct: 349 KMDRAIEYLDIMVSRGCYPDIVTYNTLL 376
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ T+N +++ +C R + D +R G P++VT+ ILI+ +C L A+
Sbjct: 262 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRK--GCSPSVVTFNILINFLCRQGLLGRAI 319
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P+ YN ++ G+
Sbjct: 320 DILEKMPMHGCTPNSLSYNPLLHGF 344
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++++ PDI L++ C K + T V ++Q G P+++TY +LI C
Sbjct: 83 MVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS----GAVPDVITYNVLISGYC 138
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ + A++++ ++ PD YNTI++
Sbjct: 139 KSGEIDNALQVLDRMN---VAPDVVTYNTILR 167
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK R +F+ M S KP TYTILI+ + +EA+
Sbjct: 472 PNAITYNSIMLGLCKSRQTDRAIDFLAYM-ISKRCKPTEATYTILIEGIAYEGLAKEALD 530
Query: 68 LVSALSDSGF 77
L++ L G
Sbjct: 531 LLNELCSRGL 540
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 20 LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKP 79
L + L + F++ M G P+++ T LI C ++A ++ L SG P
Sbjct: 67 LVRNGELEDGFKFLESM-VYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVP 125
Query: 80 DCFVYNTIMKGY 91
D YN ++ GY
Sbjct: 126 DVITYNVLISGY 137
>gi|260780546|gb|ACX50819.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 182
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + N+ +
Sbjct: 3 QVPPHAFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGNVED 59
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD ++ ++ G
Sbjct: 60 AIRLLHRMIDEGFKPDVVTFSVVVNG 85
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T++ +V LCK + ++ + + G+ N + Y+ LID +
Sbjct: 67 MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFN-GLAINSMFYSSLIDGLGKAG 125
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 126 RIDEAERLFEEMSEKGCTRDSYCYNALIDAF 156
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K ++ + +M G KP++VT++++++ +C
Sbjct: 32 MIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRM-IDEGFKPDVVTFSVVVNGLCKNG 90
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 91 RVEEALDYFQTCQFNGLAINSMFYSSLIDG 120
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI TYN L+ CK + ++M S I PN ++Y IL++ CN +
Sbjct: 459 KNIKPDIVTYNILIDGFCKTTEMEKANELWNEM-ISRKIFPNHISYAILVNGYCNLGFVS 517
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL + G KP NT++KGY
Sbjct: 518 EAFRLWDEMIRKGIKPTLVTCNTVIKGY 545
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN L+ K + + +++M G++P++VTY ++++ C
Sbjct: 561 MISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETK-GLQPDVVTYNVILNGFCRQG 619
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + + G PD Y T++ GY
Sbjct: 620 RMQEAELILRKMIERGIDPDRSTYTTLINGY 650
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N +V LCK + V F+ M GI ++VTY LI+ C L EA +
Sbjct: 184 NVYTLNIMVNALCKDHKIDDVKPFLIDMEQK-GIFADIVTYNTLINAYCREGLLGEAFEV 242
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++++S G KP F YN ++ G
Sbjct: 243 MNSMSGKGLKPTLFTYNAVING 264
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN ++ LCK + L D+M G+ P+ T+T LI C N+ +A+ L
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEM-VERGVVPDFCTFTTLIHGHCKEGNMGKALSL 452
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ KPD YN ++ G+
Sbjct: 453 FGIMTQKNIKPDIVTYNILIDGF 475
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P+ +Y LV C ++ + D+M GIKP LVT +I C +
Sbjct: 491 MISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEM-IRKGIKPTLVTCNTVIKGYCRSG 549
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +A + + G PD YNT++ G+
Sbjct: 550 DLSKADEFLGKMISEGVGPDSITYNTLINGF 580
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TYN ++ C+ + + +M GI P+ TYT LI+ + NL+
Sbjct: 599 KGLQPDVVTYNVILNGFCRQGRMQEAELILRKM-IERGIDPDRSTYTTLINGYVSQDNLK 657
Query: 64 EAMRLVSALSDSGFKPD 80
EA R + GF PD
Sbjct: 658 EAFRFHDEMLQRGFVPD 674
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P +FTYN ++ LCK ++M S+G+ P+ TY L+ C N
Sbjct: 249 KGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM-LSIGLSPDTTTYNTLLVESCRNNNFL 307
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA + S + G PD +++++
Sbjct: 308 EAKDIFSDMLHRGVSPDLISFSSLI 332
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + DI TYN L+ C+ L + ++ M G+KP L TY +I+ +C
Sbjct: 214 KGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGK-GLKPTLFTYNAVINGLCKKGRYV 272
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A + + + G PD YNT++
Sbjct: 273 RAKGVFNEMLSIGLSPDTTTYNTLL 297
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ +++ L+ + L + M+ S G+ P+ V YTILI+ C
Sbjct: 316 MLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTS-GLVPDNVIYTILINGYCRNG 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + + + G D YNTI+ G
Sbjct: 375 MMSEALEIRDKMLEQGCALDVVAYNTILNG 404
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ C+ + + M G+ P+L++++ LI +L +A
Sbjct: 286 LSPDTTTYNTLLVESCRNNNFLEAKDIFSDM-LHRGVSPDLISFSSLIGVSSRNGHLDQA 344
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + SG PD +Y ++ GY
Sbjct: 345 LMYFRDMKTSGLVPDNVIYTILINGY 370
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ C+ ++ D+M G ++V Y +++ +C K L +A
Sbjct: 356 LVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQ-GCALDVVAYNTILNGLCKKKLLADA 414
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD + T++ G+
Sbjct: 415 NALFDEMVERGVVPDFCTFTTLIHGH 440
>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
Length = 558
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + T++ +V CLCK +T D MRA LG +P + +Y L+ +C
Sbjct: 204 MVARGFRPSVATFSAVVGCLCKRGRVTKAMEVFDAMRA-LGCEPTIRSYNSLVGGLCYVG 262
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L++ L DS PD + + ++ G+
Sbjct: 263 RLEEALDLLNKLKDSPMTPDIYTFTIVLDGF 293
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +YN LV LC L + +++++ S + P++ T+TI++D C EA
Sbjct: 246 PTIRSYNSLVGGLCYVGRLEEALDLLNKLKDS-PMTPDIYTFTIVLDGFCKVGRTEEATA 304
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G P F YN ++ G+
Sbjct: 305 IFHDAIGMGLSPTIFTYNALLNGH 328
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 6 LPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PDI+T+ ++ CK R+ F D + +G+ P + TY L++ C N +
Sbjct: 279 MTPDIYTFTIVLDGFCKVGRTEEATAIFHDAI--GMGLSPTIFTYNALLNGHCKEGNPLK 336
Query: 65 AMRLVSAL--SDSGFKPDCFVYNTIM 88
A L+ + +D+ PD + ++
Sbjct: 337 AFALLMEMCGNDAACPPDKISFGIVL 362
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN LV C+ R + + V++MR G+KP+ VTYT LID C L AM +
Sbjct: 381 DLVAYNALVNGFCRVRDMKAANDIVEEMRKD-GLKPDKVTYTTLIDGCCKEGELDTAMEM 439
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+SD G D Y ++ G
Sbjct: 440 KQEMSDEGVALDDVTYTALISG 461
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+ +N L++ + + L + N D+M G++P +VT+ L+ +C +L A
Sbjct: 238 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRR-GVQPTVVTFNTLMSGMCKASDLNNA 296
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ +G PD + Y ++G
Sbjct: 297 NALRGLMAKAGIAPDVYTYGAFIQG 321
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY ++ LCK + ++M G+ PN V T LID C ++
Sbjct: 308 IAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM-CERGLNPNTVVLTTLIDAHCKEGDVTAG 366
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L ++ G K D YN ++ G+
Sbjct: 367 LELRWEMATRGVKADLVAYNALVNGF 392
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + T+N L+ +CK L N + + A GI P++ TY I +C T
Sbjct: 268 MLRRGVQPTVVTFNTLMSGMCKASDLNNA-NALRGLMAKAGIAPDVYTYGAFIQGLCKTG 326
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++AM + + + G P+ V T++ +
Sbjct: 327 RIQDAMEMFEEMCERGLNPNTVVLTTLIDAH 357
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ CK + T + + +M+ G P +VTY ++++ C+ ++ A
Sbjct: 483 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNK-GKNPGIVTYNVVMNGFCSLGQMKNA 541
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A+ + G P+ YN ++ G+
Sbjct: 542 DMLLNAMLNIGVCPNDITYNILLDGH 567
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ L+ CK +T +M A+ G+K +LV Y L++ C ++++
Sbjct: 341 RGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM-ATRGVKADLVAYNALVNGFCRVRDMK 399
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +V + G KPD Y T++ G
Sbjct: 400 AANDIVEEMRKDGLKPDKVTYTTLIDG 426
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 9 DIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D TY L+ L K RS+ + M A G++P+ TYT++ID C +++ +
Sbjct: 451 DDVTYTALISGLSKAGRSVDAERILCEMMEA--GLQPDNTTYTMVIDAFCKNGDVKTGFK 508
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P YN +M G+
Sbjct: 509 HLKEMQNKGKNPGIVTYNVVMNGF 532
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ CK L T +M + G+ + VTYT LI + +A
Sbjct: 413 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEM-SDEGVALDDVTYTALISGLSKAGRSVDA 471
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++ + ++G +PD Y ++ +
Sbjct: 472 ERILCEMMEAGLQPDNTTYTMVIDAF 497
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN ++ C + ++ M ++G+ PN +TY IL+D C +R+
Sbjct: 520 PGIVTYNVVMNGFCSLGQMKNADMLLNAM-LNIGVCPNDITYNILLDGHCKHGKVRDTEE 578
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L SA G D VY +++ +
Sbjct: 579 LKSA---KGMVSDFGVYTSLINEF 599
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ + + +D+M+ GI+ ++VTY +LI +C +R
Sbjct: 398 KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK-GIEADVVTYNVLIGALCCKGEVR 456
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L+ +S+ G +P+ YNTI++G+
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGF 484
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVCNTKNL 62
L P + TYN L+ CK +Y+ VD + + GI P VT+ +LI+ C N
Sbjct: 222 LAPSVATYNSLIDGYCKKGGAGNMYH-VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNT 280
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R+ + G YN+++ G
Sbjct: 281 AAAVRVFEEMKQQGIAASVVTYNSLISG 308
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN---TK 60
+++ PDI+T+N ++ LC+ L + ++A G+ P++ TY LID C
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKA-WGLAPSVATYNSLIDGYCKKGGAG 243
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ L+ + ++G P + ++ GY
Sbjct: 244 NMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TYN L+ LC + +D+M + +G++PN +TY +I C+ N++
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIK 491
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
A + + + + + YN +K
Sbjct: 492 SAYEIRTRMEKCRKRANVVTYNVFIK 517
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P T+ L+ CK + ++M+ GI ++VTY LI +C+ + E
Sbjct: 260 ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQ-GIAASVVTYNSLISGLCSEGKVEEG 318
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L+ + D G P+ + ++KG+
Sbjct: 319 VKLMEEMEDLGLSPNEITFGCVLKGF 344
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ ++K CK + +++D M ++P++V Y ILID + +A
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGM-TERNVEPDVVIYNILIDVYRRLGKMEDA 388
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + A++ G P+ YN ++ G+
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGF 414
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN +++ C ++ + Y +M + N+VTY + I C + EA
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRK-RANVVTYNVFIKYFCQIGKMDEA 528
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ + D P+ Y TI +G
Sbjct: 529 NDLLNEMLDKCLVPNGITYETIKEG 553
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ LC + +++M LG+ PN +T+ ++ C + +A +
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDWI 357
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+++ +PD +YN ++ Y
Sbjct: 358 DGMTERNVEPDVVIYNILIDVY 379
>gi|356577073|ref|XP_003556653.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 581
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C + +++ M S G++P+ T+T ++ +C N+ EA +
Sbjct: 263 PDVVTYNILINACCVGGRTSVAIDWLHSMVRS-GVEPSAATFTTILHALCREGNVVEAQK 321
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + D G P+ +YNT+M GY
Sbjct: 322 LFDGIQDVGIAPNAAMYNTLMDGY 345
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDIFT+N L+ CK + ++M S G+ P++ TY + C + + +A
Sbjct: 406 LLPDIFTFNILIGGYCKTFDMVGASEIFNKMY-SCGLDPDITTYNTRMHGYCRMRKMNKA 464
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ L +G PD YNT++ G
Sbjct: 465 VIILDQLISAGIVPDTVTYNTMLSG 489
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN + C+ R + +DQ+ S GI P+ VTY ++ +C + L A
Sbjct: 441 LDPDITTYNTRMHGYCRMRKMNKAVIILDQL-ISAGIVPDTVTYNTMLSGIC-SDILDHA 498
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + L GF P+ N ++ +
Sbjct: 499 MIFTAKLLKMGFLPNVITTNMLLSHF 524
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P T+ ++ LC+ ++ D ++ +GI PN Y L+D +
Sbjct: 291 MVRSGVEPSAATFTTILHALCREGNVVEAQKLFDGIQ-DVGIAPNAAMYNTLMDGYFKVR 349
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L + G PDC +N ++ G+
Sbjct: 350 EVGQASLLYEEMRRKGVSPDCVTFNILVGGH 380
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIK---PNLVTYTILIDNVCNT 59
K + PD T+N LV K + + D + + L + P++ T+ ILI C T
Sbjct: 364 KGVSPDCVTFNILVGGHYKYGRKEDLNRLLKDSILSGLFLDCLLPDIFTFNILIGGYCKT 423
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A + + + G PD YNT M GY
Sbjct: 424 FDMVGASEIFNKMYSCGLDPDITTYNTRMHGY 455
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ + + +D+M+ GI+ ++VTY +LI +C +R
Sbjct: 398 KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK-GIEADVVTYNVLIGALCCKGEVR 456
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L+ +S+ G +P+ YNTI++G+
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGF 484
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ ++K CK + +++D M ++P++V YTILID + +A
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGM-TERNVEPDVVIYTILIDGYRRLGKMEDA 388
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + A++ G P+ YN ++ G+
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGF 414
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVCNTKNL 62
L P + TYN L+ CK +Y+ VD + + GI P VT+ +LI+ C N
Sbjct: 222 LAPSVATYNSLIDGYCKKGGAGNMYH-VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNT 280
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R+ + G YN+++ G
Sbjct: 281 AAAVRVFEEMKQQGIAASVVTYNSLISG 308
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN---TK 60
+++ PDI+T+N ++ LC+ L + ++A G+ P++ TY LID C
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKA-WGLAPSVATYNSLIDGYCKKGGAG 243
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ L+ + ++G P + ++ GY
Sbjct: 244 NMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TYN L+ LC + +D+M + +G++PN +TY +I C+ N++
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIK 491
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
A + + + + + YN +K
Sbjct: 492 SAYEIRTRMEKCRKRANVVTYNVFIK 517
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P T+ L+ CK + ++M+ GI ++VTY LI +C+ + E
Sbjct: 260 ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQ-GIAASVVTYNSLISGLCSEGKVEEG 318
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L+ + D G P+ + ++KG+
Sbjct: 319 VKLMEEMEDLGLSPNEITFGCVLKGF 344
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN +++ C ++ + Y +M + N+VTY + I C + EA
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRK-RANVVTYNVFIKYFCQIGKMDEA 528
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ + D P+ Y TI +G
Sbjct: 529 NDLLNEMLDKCLVPNGITYETIKEG 553
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ LC + +++M LG+ PN +T+ ++ C + +A +
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDWI 357
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+++ +PD +Y ++ GY
Sbjct: 358 DGMTERNVEPDVVIYTILIDGY 379
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ + + +D+M+ GI+ ++VTY +LI +C +R
Sbjct: 398 KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK-GIEADVVTYNVLIGALCCKGEVR 456
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L+ +S+ G +P+ YNTI++G+
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGF 484
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVCNTKNL 62
L P + TYN L+ CK +Y+ VD + + GI P VT+ +LI+ C N
Sbjct: 222 LAPSVATYNSLIDGYCKKGGAGNMYH-VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNT 280
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R+ + G YN+++ G
Sbjct: 281 AAAVRVFEEMKQQGIAASVVTYNSLISG 308
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN---TK 60
+++ PDI+T+N ++ LC+ L + ++A G+ P++ TY LID C
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKA-WGLAPSVATYNSLIDGYCKKGGAG 243
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ L+ + ++G P + ++ GY
Sbjct: 244 NMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TYN L+ LC + +D+M + +G++PN +TY +I C+ N++
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIK 491
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
A + + + + + YN +K
Sbjct: 492 SAYEIRTRMEKCRKRANVVTYNVFIK 517
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P T+ L+ CK + ++M+ GI ++VTY LI +C+ + E
Sbjct: 260 ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQ-GIAASVVTYNSLISGLCSEGKVEEG 318
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L+ + D G P+ + ++KG+
Sbjct: 319 VKLMEEMEDLGLSPNEITFGCVLKGF 344
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ ++K CK + +++D M ++P++V Y ILID + +A
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGM-TERNVEPDVVIYNILIDVYRRLGKMEDA 388
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + A++ G P+ YN ++ G+
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGF 414
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN +++ C ++ + Y +M + N+VTY + I C + EA
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRK-RANVVTYNVFIKYFCQIGKMDEA 528
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ + D P+ Y TI +G
Sbjct: 529 NDLLNEMLDKCLVPNGITYETIKEG 553
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ LC + +++M LG+ PN +T+ ++ C + +A +
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDWI 357
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+++ +PD +YN ++ Y
Sbjct: 358 DGMTERNVEPDVVIYNILIDVY 379
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD+ TY L++ CK + +D+MR G KP++VTY +LI+ +C L
Sbjct: 245 KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK-GSKPDVVTYNVLINGICKEGRLD 303
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA++ ++ + G +P+ +N I++
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILR 329
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC L +D+ + P+++TYTILI+ C + +A
Sbjct: 212 VAPDVVTYNTILRTLCDSGKLKQAMEVLDR-QLQKECYPDVITYTILIEATCKESGVGQA 270
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M+L+ + + G KPD YN ++ G
Sbjct: 271 MKLLDEMRNKGSKPDVVTYNVLING 295
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + ++Q+ +S G P L+TY +ID + A++
Sbjct: 424 PDIVTYNTLLTALCKDGKVDVAVEILNQL-SSKGCSPVLITYNTVIDGLSKVGKTERAIK 482
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G KPD Y++++ G
Sbjct: 483 LLDEMRRKGLKPDIITYSSLVSG 505
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K P + TYN ++ L K +D+MR G+KP+++TY+ L+ +
Sbjct: 452 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK-GLKPDIITYSSLVSGLSREG 510
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++ L G +P+ YN+IM G
Sbjct: 511 KVDEAIKFFHDLEGLGIRPNAITYNSIMLG 540
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TYN L+ +CK L F++ M S G +PN++T+ I++ ++C+T
Sbjct: 280 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PSYGCQPNVITHNIILRSMCSTGRWM 338
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A +L+S + G P +N ++
Sbjct: 339 DAEKLLSDMLRKGCSPSVVTFNILI 363
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I +++P P+ +YN L+ CK + + ++D M S G P++VTY L+ +
Sbjct: 378 ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM-VSRGCYPDIVTYNTLLTAL 436
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A+ +++ LS G P YNT++ G
Sbjct: 437 CKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 470
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI TY+ LV L + + F + LGI+PN +TY ++ +C ++
Sbjct: 490 KGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEG-LGIRPNAITYNSIMLGLCKSRQTD 548
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + KP Y +++G
Sbjct: 549 RAIDFLAYMISKRCKPTEATYTILIEG 575
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + T+N L+ LC+ L + +++M G PN ++Y L+ C K
Sbjct: 347 MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMH-GCTPNSLSYNPLLHGFCKEK 405
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YNT++
Sbjct: 406 KMDRAIEYLDIMVSRGCYPDIVTYNTLL 433
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ T+N +++ +C R + D +R G P++VT+ ILI+ +C L A+
Sbjct: 319 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRK--GCSPSVVTFNILINFLCRQGLLGRAI 376
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P+ YN ++ G+
Sbjct: 377 DILEKMPMHGCTPNSLSYNPLLHGF 401
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++++ PDI L++ C K + T V ++Q G P+++TY +LI C
Sbjct: 140 MVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS----GAVPDVITYNVLISGYC 195
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ + A++++ ++ PD YNTI++
Sbjct: 196 KSGEIDNALQVLDRMN---VAPDVVTYNTILR 224
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK R +F+ M S KP TYTILI+ + +EA+
Sbjct: 529 PNAITYNSIMLGLCKSRQTDRAIDFLAYM-ISKRCKPTEATYTILIEGIAYEGLAKEALD 587
Query: 68 LVSALSDSGF 77
L++ L G
Sbjct: 588 LLNELCSRGL 597
>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 376
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++ PP+I TY+ L+ LCK Y+ V +M G+ P+++TY++L+ +
Sbjct: 186 IFREMGTTDCPPNIATYSILIDGLCKGERFGEAYDLVKEMLEK-GLNPSVITYSLLMKGL 244
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A++L + ++ GFKPD ++N ++ G
Sbjct: 245 CLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHG 278
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+K L +M + PN+ TY+ILID +C + EA
Sbjct: 162 PNTHVYNALIKGLIGASKRDDAVRIFREM-GTTDCPPNIATYSILIDGLCKGERFGEAYD 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + G P Y+ +MKG
Sbjct: 221 LVKEMLEKGLNPSVITYSLLMKG 243
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P + TY+ L+K LC + +Q+ G KP++ + ILI +C+
Sbjct: 225 MLEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKK-GFKPDVQMHNILIHGLCSVG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ L ++ P+ NT+M+G+
Sbjct: 284 KTQLALSLYLDMNRWNCAPNLVTQNTLMEGF 314
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C L +A+ +
Sbjct: 93 DSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVL-DAFAYSAMINALCKESKLEKAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYN ++KG
Sbjct: 152 LNGMIRSGCKPNTHVYNALIKG 173
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC ++ + ++D R + PNLVT L++ N+
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCA--PNLVTQNTLMEGFYKDGNV 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + + +PD YN +KG
Sbjct: 321 RNALVIWARILKNELQPDIISYNITLKG 348
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN L+ LCK L + +++M+ G +PN++TYTILID C L EA
Sbjct: 12 PDIFTYNTLILGLCKKGYLVSARELMNEMQIK-GCEPNVITYTILIDRFCKEGRLEEARN 70
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ +S G + YN ++
Sbjct: 71 VLDEMSGKGLALNAVGYNCLI 91
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P D TYN L+K LC+ ++ + M S G+ PN ++ ILI+ +C T
Sbjct: 180 MLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM-MSKGLNPNNISCNILINGLCRTG 238
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++ A+ + + G PD YN+++ G
Sbjct: 239 NIQHALEFLRDMIHRGLTPDIVTYNSLING 268
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY L+ CK L N +D+M G+ N V Y LI +C + ++
Sbjct: 43 KGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK-GLALNAVGYNCLISALCKDEKVQ 101
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + +S G KPD F +N+++ G
Sbjct: 102 DALNMFGDMSSKGCKPDIFTFNSLIFG 128
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI TYN L+ LCK N D+++ GI P+ +TY LI C
Sbjct: 250 MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE-GICPDAITYNTLISWHCKEG 308
Query: 61 NLREAMRLVSALSDSGFKPD 80
+A L+S DSGF P+
Sbjct: 309 MFDDAHLLLSRGVDSGFIPN 328
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ + N L+ LC+ ++ F+ M G+ P++VTY LI+ +C T
Sbjct: 215 MMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM-IHRGLTPDIVTYNSLINGLCKTG 273
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ L L G PD YNT++ +
Sbjct: 274 RAQEALNLFDKLQVEGICPDAITYNTLISWH 304
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDIFT+N L+ LCK M G+ N +TY LI ++
Sbjct: 113 KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE-GVIANTITYNTLIHAFLRRGAMQ 171
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA++LV+ + G D YN ++K
Sbjct: 172 EALKLVNDMLFRGCPLDDITYNGLIK 197
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + YN L+ LCK + N M +S G KP++ T+ LI +C
Sbjct: 78 KGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSKGCKPDIFTFNSLIFGLCKVNKFE 136
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + G + YNT++ +
Sbjct: 137 EALGLYQDMLLEGVIANTITYNTLIHAF 164
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFT+N L+ CK + + +MR SLG P++V+Y LI +C+ EA R
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLFLEMR-SLGCPPDVVSYNTLIRGMCSKGKPHEAQR 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + SG PD YN ++ GY
Sbjct: 284 LLREMIRSGVGPDIVSYNILIDGY 307
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +YN L++ +C + +M S G+ P++V+Y ILID + L A+
Sbjct: 259 PPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRS-GVGPDIVSYNILIDGYSKSGALDHAI 317
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L + SG +PD F Y+TI+
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTII 339
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F+Y+ L+ LC+ + + +++M G +PN+VTY L+ +C L+EA+
Sbjct: 85 PNVFSYSILIAGLCRGQKVDEAAELLNEMIDG-GHQPNVVTYGSLLSGLCKMGKLKEAVD 143
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S + G PD VYN ++ G+
Sbjct: 144 LFSRMVYRGCPPDGVVYNVLIDGF 167
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TY +L++ LC+ + + M A+ G PN+ +Y+ILI +C + + EA
Sbjct: 50 PNTYTYGYLLRSLCQAQRFEEARSVFRGM-AAQGCSPNVFSYSILIAGLCRGQKVDEAAE 108
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + D G +P+ Y +++ G
Sbjct: 109 LLNEMIDGGHQPNVVTYGSLLSG 131
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK L + +M G P+ V Y +LID ++ EA R
Sbjct: 120 PNVVTYGSLLSGLCKMGKLKEAVDLFSRM-VYRGCPPDGVVYNVLIDGFSKKGDMGEAYR 178
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P F YN+++ G+
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGF 202
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P +FTYN L+ + V + F D +R G PN+ T+ L+D C ++ EA
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ--GCVPNIFTFNNLLDGFCKMGDMVEAH 247
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + G PD YNT+++G
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLIRG 271
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+YN+L++ L K VY + M A+ G PN TY L+ ++C + EA +
Sbjct: 18 LSYNYLLEVLAKSGRCDHVYGTYNDMLAA-GCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
++ G P+ F Y+ ++ G
Sbjct: 77 GMAAQGCSPNVFSYSILIAG 96
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD F+Y+ ++ CLC+ + + M A+ G P+ L+ +C + L E+
Sbjct: 328 LEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN-GSAPDAAVVIPLVIGLCRGERLTES 386
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L A+ P YN +M
Sbjct: 387 CELFQAMVKFECVPLIPEYNLLM 409
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN L+ K +L ++ S G++P+ +Y+ +ID +C + A
Sbjct: 295 PDIVSYNILIDGYSKSGALDHAIKLFYEIPKS-GLEPDAFSYSTIIDCLCRAGKVGAAFV 353
Query: 68 LVSALSDSGFKPDCFV 83
+ + +G PD V
Sbjct: 354 VFKDMIANGSAPDAAV 369
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN LV LCK + + ++ M G+ P+++TY++L+D C + EA+
Sbjct: 393 PNVITYNALVNGLCKADKMERAHAMIESM-VDKGVTPDVITYSVLVDAFCKASRVDEALE 451
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ G P+ +N+I+ G
Sbjct: 452 LLHGMASRGCTPNVVTFNSIIDG 474
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD T++ L+ LCKC N D M A G PN+VTY +L++ +C T +
Sbjct: 849 RVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAG-GYVPNVVTYNVLMNGLCKTDKMER 907
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ ++ D G PD Y+ ++ +
Sbjct: 908 AHAMIESMVDKGVTPDVITYSVLVDAF 934
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK + + ++ M G+ P+++TY++L+D C ++ EA+
Sbjct: 887 PNVVTYNVLMNGLCKTDKMERAHAMIESM-VDKGVTPDVITYSVLVDAFCKASHVDEALE 945
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ G P+ +N+I+ G
Sbjct: 946 LLHGMASRGCTPNVVTFNSIIDG 968
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP++ TYN LV LCK + F+++M +S G P+ +TY L+ +C +A
Sbjct: 633 VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSS-GCVPDSITYGSLVYALCRASRTDDA 691
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++LVS L G+ PD YN ++ G
Sbjct: 692 LQLVSELKSFGWDPDTVTYNILVDG 716
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ T+ L+ LCK + + +D M +LG+ PN+VTY L+ +C +
Sbjct: 593 MVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM-GNLGVPPNVVTYNALVHGLCKSG 651
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA + + + SG PD Y +++
Sbjct: 652 RIEEACQFLEEMVSSGCVPDSITYGSLV 679
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD T++ L+ LCKC + + D M A G PN++TY L++ +C +
Sbjct: 355 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAG-GYVPNVITYNALVNGLCKADKMER 413
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ ++ D G PD Y+ ++ +
Sbjct: 414 AHAMIESMVDKGVTPDVITYSVLVDAF 440
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TY+ L+ LCK + + +M R S + PN++TY +D +C + EA
Sbjct: 778 PNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEAC 837
Query: 67 RLVSALSDSGFK--PDCFVYNTIMKG 90
L+ +L D + PD ++T++ G
Sbjct: 838 ELMRSLRDGSLRVSPDTVTFSTLIDG 863
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY+ LV CK + + M AS G PN+VT+ +ID +C +
Sbjct: 915 MVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGM-ASRGCTPNVVTFNSIIDGLCKSD 973
Query: 61 NLREAMRLVSALS-DSGFKPDCFVYNTIMKG 90
EA ++ ++ G PD Y T++ G
Sbjct: 974 QSGEAFQMFDDMTLKHGLAPDKITYCTLIDG 1004
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN ++ LCK L +++ G P++VTY LID++C +L EA R
Sbjct: 214 PTIVTYNTIINGLCKSNELGAGMELFEEL-VERGHHPDVVTYNTLIDSLCKAGDLEEARR 272
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +S P+ Y+ ++ G
Sbjct: 273 LHGDMSSRSCVPNVVTYSVLING 295
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-ASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+I TYN + LCK + + +R SL + P+ VT++ LID +C EA
Sbjct: 815 PNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 874
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + G+ P+ YN +M G
Sbjct: 875 NVFDDMIAGGYVPNVVTYNVLMNG 898
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TY+ L+ LCK + + +M R S + PN++TY +D +C EA
Sbjct: 284 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 343
Query: 67 RLVSALSDSGFK--PDCFVYNTIMKG 90
L+ +L D + PD ++T++ G
Sbjct: 344 ELMRSLRDGSLRVSPDTVTFSTLIDG 369
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY+ LV CK + + M AS G PN+VT+ +ID +C +
Sbjct: 421 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM-ASRGCTPNVVTFNSIIDGLCKSD 479
Query: 61 NLREAMRLVSALS-DSGFKPDCFVYNTIMKG 90
EA ++ ++ G PD Y T++ G
Sbjct: 480 RSGEAFQMFDDMALKHGLVPDKITYCTLIDG 510
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY LV LC+ V +++ S G P+ VTY IL+D + + +A+
Sbjct: 670 PDSITYGSLVYALCRASRTDDALQLVSELK-SFGWDPDTVTYNILVDGLWKSGQTEQAIT 728
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G PD YNT++
Sbjct: 729 VLEEMVGKGHHPDVVTYNTLI 749
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLREA 65
PD+ TYN L+ LCK L M R S PN+VTY++LI+ +C + EA
Sbjct: 740 PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEA 799
Query: 66 MRLVSAL--SDSGFKPDCFVYNTIMKG 90
L+ + P+ YN+ + G
Sbjct: 800 RELIQEMMRKSCDVLPNIITYNSFLDG 826
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-ASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+I TYN + LCK + +R SL + P+ VT++ LID +C + EA
Sbjct: 321 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 380
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + G+ P+ YN ++ G
Sbjct: 381 SVFDDMIAGGYVPNVITYNALVNG 404
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN +++ LC+ A G+ P +VTY +I+ +C + L M L L
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 242
Query: 73 SDSGFKPDCFVYNTIM 88
+ G PD YNT++
Sbjct: 243 VERGHHPDVVTYNTLI 258
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N ++ LCK + D M G+ P+ +TY LID + T +A
Sbjct: 463 PNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEA 522
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ A+ D PD + +N + G
Sbjct: 523 LLDAMPD----PDTYAFNCCING 541
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L PD T+N L+ CK + ++M A ++P+++T+ LID +C +
Sbjct: 562 ELVPDKVTFNILIAGACKAGNFEQASALFEEMVAK-NLQPDVMTFGALIDGLCKAGQVEA 620
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++ + + G P+ YN ++ G
Sbjct: 621 ARDILDLMGNLGVPPNVVTYNALVHG 646
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N ++ LCK + D M G+ P+ +TY LID + T +A
Sbjct: 957 PNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEV 1016
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ A+ D PD + +N + G
Sbjct: 1017 LLDAMPD----PDTYAFNCCING 1035
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN LV L K +++M G P++VTY LID++C +L EA R
Sbjct: 705 PDTVTYNILVDGLWKSGQTEQAITVLEEMVGK-GHHPDVVTYNTLIDSLCKAGDLEEARR 763
Query: 68 LVSALSDSGFK---PDCFVYNTIMKG 90
L +S + P+ Y+ ++ G
Sbjct: 764 LHGDMSSRVSRCCVPNVVTYSVLING 789
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + +N + L K ++ ++M L + P+ VT+ ILI C N +A
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRM-LELELVPDKVTFNILIAGACKAGNFEQASA 588
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +PD + ++ G
Sbjct: 589 LFEEMVAKNLQPDVMTFGALIDG 611
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + +N + L K L V + +M L + P+ VT+ ILI C N +A
Sbjct: 1024 PDTYAFNCCINGLSK---LGDVSRALHRM-LELELVPDKVTFNILIAGACKAGNFEQASA 1079
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +PD + ++ G
Sbjct: 1080 LFEEMVAKNLQPDVMTFGALIDG 1102
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + P++ T N LV +C+ +++ NF V+ R G+K + VTYT LI+ CN N
Sbjct: 448 EGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRR--GMKGDAVTYTALINAFCNVNNF 505
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+AM L + + SG PD VY T++ G+
Sbjct: 506 EKAMELFNEMLKSGCSPDAIVYYTLISGF 534
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ YN L+ LCK +++MR+ G P+ +TY LID C + +
Sbjct: 379 VEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKG 438
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ G P+ NT++ G
Sbjct: 439 KELFDEMNKEGVAPNVVTVNTLVGG 463
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-------SLGIKPNLVTYTILI 53
++ + P++ T+ L+ +CK R + +++M S+ ++P++V Y LI
Sbjct: 331 MVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLI 390
Query: 54 DNVCNTKNLREAMRLVSAL-SDSGFKPDCFVYNTIMKGY 91
D +C +E + L+ + S G PD YN ++ G+
Sbjct: 391 DGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGF 429
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P + TY ++ C + M+A+ + PN V Y ILI+++C
Sbjct: 620 MIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNN 679
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A+ L+ + G P+ YN I KG
Sbjct: 680 KVKSAVSLMEDMKIWGVTPNTTTYNAIFKG 709
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ + + +FV LGI+P+ V Y LI C T
Sbjct: 522 PDAIVYYTLISGFSQAGRMADA-SFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFE 580
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + ++G KPD YNT++
Sbjct: 581 MLKEMEEAGLKPDTITYNTLI 601
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ C+ V+ + +M + G+KP+ +TY LI +L+ A +
Sbjct: 557 PDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEA-GLKPDTITYNTLIAYASKNGDLKFAQK 615
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G P Y ++ Y
Sbjct: 616 VMRKMIKAGVVPTVATYGAVINAY 639
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L + + + +++M + I+PN+VT+ ILI+++C + + +A+ ++ +S
Sbjct: 309 NSLLTGLAREGNFNRMNELMEKM-VEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMS 367
Query: 74 ---DSG-----FKPDCFVYNTIMKG 90
+SG +PD +YNT++ G
Sbjct: 368 GGKESGGISVSVEPDVVIYNTLIDG 392
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP+ YN L+ LCK + + + ++ M+ G+ PN TY + + + K+L +
Sbjct: 660 KVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKI-WGVTPNTTTYNAIFKGLRDEKDLEK 718
Query: 65 AMRLVSALSDSGFKPD 80
+ + + PD
Sbjct: 719 VFEFMDRMIEHACNPD 734
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ K L + +M + G+ P + TY +I+ C N EA
Sbjct: 590 LKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKA-GVVPTVATYGAVINAYCLNGNGNEA 648
Query: 66 MRLVSAL-SDSGFKPDCFVYNTIM 88
M + + + S P+ +YN ++
Sbjct: 649 MEIFKDMKAASKVPPNTVIYNILI 672
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ ++ CL K ++ ++M G P+LVTY I+ID + N AM+
Sbjct: 170 PDTFTYSVIIHCLGKAGKVSEALKLFEEM-VERGFAPSLVTYNIIIDLQAKSGNYVMAMK 228
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + + D+GF PD Y+ +M+
Sbjct: 229 LYNDMQDAGFHPDRVTYSIMME 250
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY ++ + + R+ + +MR G +P +VTY LI L EAMR+
Sbjct: 66 DVCTYTTMIGIMGRARNFEACSRLLQEMRRE-GCEPCVVTYNRLIHAYGRANFLGEAMRI 124
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G PD Y T++
Sbjct: 125 FYQMQEEGCSPDRVTYCTLV 144
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TYN ++ K + + M+ + G P+ VTY+I+++ +
Sbjct: 198 MVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDA-GFHPDRVTYSIMMEVLGQIG 256
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L+EA + + + +G+ PD +Y ++
Sbjct: 257 HLQEAELMFNEMEQAGWVPDAPIYGVMV 284
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF Q+ PD TY LV K + +M+ + G +P+ TY+++I +
Sbjct: 124 IFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQA-GFQPDTFTYSVIIHCL 182
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA++L + + GF P YN I+
Sbjct: 183 GKAGKVSEALKLFEEMVERGFAPSLVTYNIII 214
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---------LGIKPNLVTYTILIDNVCN 58
P++ TYN +V LCK ++M+ G++P++VT+ +LID +C
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCK 272
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +L+ + +SG PD YN++++G+
Sbjct: 273 EGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 305
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I N L+ LCK L T + +++ ++ G +PN+VTYTI+I C + +A L
Sbjct: 434 EIENLNCLIDGLCKAGKLETAWELFEKL-SNEGHEPNVVTYTIMIHGFCREGQVDKANVL 492
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +G PD YNT+M+G+
Sbjct: 493 IQKMEANGCTPDIITYNTLMRGF 515
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ T+N L+ LCK + + M S GI P+LVTY LI+ C
Sbjct: 251 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES-GIVPDLVTYNSLIEGFCMVG 309
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L ++ G +PD YN ++ GY
Sbjct: 310 DLNSARELFVSMPSKGCEPDVISYNVLINGY 340
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 1 LIFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
L+ + P P + ++N L+ L K + + V++ +QMR S G+ + T IL++ +CN
Sbjct: 59 LMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLS-GLSSDRCTLNILLNCLCNV 117
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LRE + + G+ P+ YNT++KG
Sbjct: 118 NRLREGFAAFAGILRRGYSPNIVTYNTLIKG 148
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TYN L++ C L + M S G +P++++Y +LI+ T
Sbjct: 286 MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM-PSKGCEPDVISYNVLINGYSKTL 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM+L + + G +P+ Y++++KG
Sbjct: 345 KVEEAMKLYNEMLLVGKRPNVITYDSLLKG 374
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L D T N L+ CLC L + F +R G PN+VTY LI +C + E
Sbjct: 100 LSSDRCTLNILLNCLCNVNRLREGFAAFAGILRR--GYSPNIVTYNTLIKGLCMEHRISE 157
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A RL + G PD Y T++KG
Sbjct: 158 ATRLFLRMQKLGCTPDVVTYGTLIKG 183
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-----RASLGIKPNLVTYTILIDNVCNTKNL 62
PD+ TY L+K LC ++ +M R + KPN++TY I++D +C
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRE 231
Query: 63 REAMRLVSALS----------DSGFKPDCFVYNTIM 88
EA +L + D G +PD +N ++
Sbjct: 232 DEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLI 267
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN L+K LC ++ +M+ LG P++VTY LI +C T N+ A++
Sbjct: 137 PNIVTYNTLIKGLCMEHRISEATRLFLRMQ-KLGCTPDVVTYGTLIKGLCGTGNINIALK 195
Query: 68 LVSALSDS------GFKPDCFVYNTIMKG 90
L + + KP+ YN I+ G
Sbjct: 196 LHQEMLNDISRYEINCKPNVITYNIIVDG 224
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+K + + M+A GI N TY I +D +C L EAM+
Sbjct: 363 PNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH-GIAENSYTYGIFLDGLCKNDCLFEAMK 421
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + L S FK + N ++ G
Sbjct: 422 LFTELKSSNFKLEIENLNCLIDG 444
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ +YN L+ K + ++M +G +PN++TY L+ + +
Sbjct: 324 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLL-VGKRPNVITYDSLLKGIFLAGKVD 382
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +L S + G + + Y + G
Sbjct: 383 DAKKLFSVMKAHGIAENSYTYGIFLDG 409
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY ++ C+ + + +M A+ G P+++TY L+ + L E ++
Sbjct: 468 PNVVTYTIMIHGFCREGQVDKANVLIQKMEAN-GCTPDIITYNTLMRGFYESNKLEEVVQ 526
Query: 68 LVSALSDSGFKPDCF 82
L+ ++ PD
Sbjct: 527 LLHRMAQKDVSPDAI 541
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN L+ LCK L + +++M+ G +PN++TYTILID C L EA
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEMQIK-GCEPNVITYTILIDRFCKEGRLEEARN 463
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ +S G + YN ++
Sbjct: 464 VLDEMSGKGLALNAVGYNCLI 484
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P D TYN L+K LC+ ++ + M S G+ PN ++ ILI+ +C T
Sbjct: 573 MLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM-MSKGLNPNNISCNILINGLCRTG 631
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++ A+ + + G PD YN+++ G
Sbjct: 632 NIQHALEFLRDMIHRGLTPDIVTYNSLING 661
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY L+ CK L N +D+M G+ N V Y LI +C + ++
Sbjct: 436 KGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK-GLALNAVGYNCLISALCKDEKVQ 494
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + +S G KPD F +N+++ G
Sbjct: 495 DALNMFGDMSSKGCKPDIFTFNSLIFG 521
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI TYN L+ LCK N D+++ GI P+ +TY LI C
Sbjct: 643 MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE-GICPDAITYNTLISWHCKEG 701
Query: 61 NLREAMRLVSALSDSGFKPD 80
+A L+S DSGF P+
Sbjct: 702 MFDDAHLLLSRGVDSGFIPN 721
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ + N L+ LC+ ++ F+ M G+ P++VTY LI+ +C T
Sbjct: 608 MMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM-IHRGLTPDIVTYNSLINGLCKTG 666
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ L L G PD YNT++ +
Sbjct: 667 RAQEALNLFDKLQVEGICPDAITYNTLISWH 697
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N + LCK + VD+M G PN TY +L+ +C + EA
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR-GFTPNSFTYGVLMHGLCRMGKVDEARM 361
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + P+ ++NT++ GY
Sbjct: 362 LLNKVPN----PNVVLFNTLINGY 381
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDIFT+N L+ LCK M G+ N +TY LI ++
Sbjct: 506 KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE-GVIANTITYNTLIHAFLRRGAMQ 564
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA++LV+ + G D YN ++K
Sbjct: 565 EALKLVNDMLFRGCPLDDITYNGLIK 590
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + YN L+ LCK + N M +S G KP++ T+ LI +C
Sbjct: 471 KGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSKGCKPDIFTFNSLIFGLCKVNKFE 529
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + G + YNT++ +
Sbjct: 530 EALGLYQDMLLEGVIANTITYNTLIHAF 557
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI--KPNLVTYTILIDNVCN 58
++ + P+ FTY L+ LC+ VD+ R L PN+V + LI+ +
Sbjct: 331 MLLRGFTPNSFTYGVLMHGLCRMGK-------VDEARMLLNKVPNPNVVLFNTLINGYVS 383
Query: 59 TKNLREAMRLV-SALSDSGFKPDCFVYNTIMKG 90
L EA ++ ++ G PD F YNT++ G
Sbjct: 384 RGRLDEAKAVMHESMLSVGCGPDIFTYNTLILG 416
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ L K + V + + +G P++ T+ I +C + EA +
Sbjct: 268 PNAIVYQTLIHALSKVGRVNEVLKLL-EEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAK 326
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + GF P+ F Y +M G
Sbjct: 327 LVDRMLLRGFTPNSFTYGVLMHG 349
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD TYN ++ LC L ++Q+ S +P ++TYTILI+ +
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL-LSDNCQPTVITYTILIEATMLEGGVD 245
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L+ + G KPD F YNTI++G
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRG 272
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK------------------CRSLTTVYN-----FVDQMR 37
++ + L PD+FTYN +++ +CK C YN ++Q +
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Query: 38 ASLGIK-----------PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
G K PN+VTY+ILI +C + EAM L+ + + G PD + Y+
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 87 IMKGY 91
++ +
Sbjct: 374 LIAAF 378
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN ++ CLC+ + + + MR S P++VTY I++ C + +A
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMR-SCEFHPSVVTYNIVLLGFCKAHRIEDA 527
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ ++ +G +P+ Y +++G
Sbjct: 528 INVLESMVGNGCRPNETTYTVLIEG 552
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD ++Y+ L+ C+ L F++ M S G P++V Y ++ +C
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM-ISDGCLPDIVNYNTVLATLCKNGKAD 420
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
+A+ + L + G P+ YNT+
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTM 444
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + +D+M S G+KP++ TY +I +C + A
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEM-LSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V L G +PD YN +++
Sbjct: 285 MVRNLELKGCEPDVISYNILLRA 307
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + TYN ++ CK + N ++ M + G +PN TYT+LI+ + E
Sbjct: 503 EFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN-GCRPNETTYTVLIEGIGFAGYRAE 561
Query: 65 AMRL------VSALSDSGFK 78
AM L + A+S+ FK
Sbjct: 562 AMELANDLVRIDAISEYSFK 581
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC+ + N + M+ G+ P+ +Y LI C L A+
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIE 389
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD YNT++
Sbjct: 390 FLETMISDGCLPDIVNYNTVL 410
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 34/118 (28%)
Query: 8 PDIFTYNFLVKCLCK------------------CRSLTTVYNFV--------DQMRA--- 38
PDI YN ++ LCK C ++ YN + D++RA
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 39 -----SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S GI P+ +TY +I +C + EA L+ + F P YN ++ G+
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
Length = 845
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK ++T V MR S G+ P++ T ILID +C L+
Sbjct: 562 PNNITYNSIISALCKAGNMTEALKLVQNMRQS-GLVPDIYTSNILIDGLCREGKLKMVDN 620
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD YNTI+ Y
Sbjct: 621 LLLDMCSNGLTPDTVTYNTIINAY 644
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI+T N L+ LC+ L V N + M S G+ P+ VTY +I+ C +++ A
Sbjct: 595 LVPDIYTSNILIDGLCREGKLKMVDNLLLDM-CSNGLTPDTVTYNTIINAYCRAQDMNSA 653
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ + +G +PD F YN M
Sbjct: 654 MNFMNKMLVAGCEPDIFTYNIWM 676
Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + + + NF+++M + G +P++ TY I + ++C L +A
Sbjct: 630 LTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVA-GCEPDIFTYNIWMHSLCRNHMLNQA 688
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L+ L P+ YNT+M G
Sbjct: 689 GKLLDELVAVDCSPNSVTYNTLMDG 713
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ +YN L+K C + + M S G +P +VTY IL+D +C+ + EA
Sbjct: 249 IAPDVCSYNILIKGHCVFGWSRDAFKMFEGMHRS-GCEPTVVTYNILVDVLCHEGRMPEA 307
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL ++ G + + +N ++ GY
Sbjct: 308 RRLFDEMAQVGIQVNTITFNVLIDGY 333
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D ++ + LC+ + Y +M S GI PN +TY +I +C N+ EA
Sbjct: 525 LQTDFIAFSAYINGLCRLDCVNEAYQAFAEM-TSRGIVPNNITYNSIISALCKAGNMTEA 583
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++LV + SG PD + N ++ G
Sbjct: 584 LKLVQNMRQSGLVPDIYTSNILIDG 608
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN + LC+ L +D++ A + PN VTY L+D +C + L AM
Sbjct: 667 PDIFTYNIWMHSLCRNHMLNQAGKLLDELVA-VDCSPNSVTYNTLMDGIC-SDVLDRAMI 724
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L FKP+ N + +
Sbjct: 725 LTGRLIKMAFKPNTITLNVFLSHF 748
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN LV LC + D+M A +GI+ N +T+ +LID + + +A
Sbjct: 286 PTVVTYNILVDVLCHEGRMPEARRLFDEM-AQVGIQVNTITFNVLIDGYAKSGQMDQASA 344
Query: 68 LVSALSDSGFKPDCFVYNTI 87
+ G PD +N I
Sbjct: 345 AYREMQARGLVPDSCTFNII 364
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 30 YNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+N ++M A G +P+L T+ ++ C+ +R A L+ + SG PD YN ++K
Sbjct: 203 WNVFEEMTAE-GPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIK 261
Query: 90 GY 91
G+
Sbjct: 262 GH 263
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N ++ C R + V + + + GI P++ +Y ILI C R+A +
Sbjct: 216 PSLATFNAMLLGFCH-RGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFK 274
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + SG +P YN ++
Sbjct: 275 MFEGMHRSGCEPTVVTYNILV 295
>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + + PD+ TY ++ C+ L + + M+ GIKP+++TYT+++D T
Sbjct: 588 LVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKER-GIKPDVITYTVVLDGHSKTN 646
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL++A+ L + G +PD Y ++ G
Sbjct: 647 NLQDAINLYDEMIARGLQPDIVTYTALLPG 676
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ C+ + V M GI P+++TYT++I+ C LREA
Sbjct: 560 PNQIMYGKLIGAFCRDGDMKRA-QLVFDMLVERGITPDVITYTMMINGYCRVNCLREARD 618
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + G KPD Y ++ G+
Sbjct: 619 IFNDMKERGIKPDVITYTVVLDGH 642
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ D+ Y L+ C L N ++M+ GI+P++VTY IL+ +
Sbjct: 412 RRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKER-GIEPDIVTYNILVGGFSRNGLKK 470
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ + G KP+ +N I++G
Sbjct: 471 EALELLDCIGTQGLKPNSATHNRIIEG 497
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ +TY +K LC+ + + +M + G+ PN VT + I+ +C+ K
Sbjct: 223 LNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEA-GVNPNAVTCSTYIEGLCSHKRSDLG 281
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ AL + + D F Y +++G+
Sbjct: 282 YEALRALRAANWPIDTFAYTAVIRGF 307
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN +V LCK + +++M+ + ++V YT LI C L +A +
Sbjct: 382 DEVLYNIVVDALCKLGKVEEAVELLNEMKGRR-MSLDVVHYTTLIAGYCLQGKLVDAKNM 440
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G +PD YN ++ G+
Sbjct: 441 FEEMKERGIEPDIVTYNILVGGF 463
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I + NFL+ L + + ++ LG+ PN TY I I +C N EA+
Sbjct: 190 PHIMSCNFLMNRLIEHGKIDMAVAIYRHLK-RLGLNPNDYTYGIFIKALCRKGNFEEAVD 248
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + ++G P+ +T ++G
Sbjct: 249 VFREMEEAGVNPNAVTCSTYIEG 271
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
+ + PD+ TY ++ K +L N D+M A G++P++VTYT L+ CN
Sbjct: 626 RGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIAR-GLQPDIVTYTALLPGKCN 679
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT------------ 48
++ + + PD + Y L+ CK +L + M S GIK NLV
Sbjct: 323 MVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDM-VSNGIKTNLVDQFKEFRDSGIFL 381
Query: 49 ----YTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
Y I++D +C + EA+ L++ + D Y T++ GY
Sbjct: 382 DEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGY 428
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRA-------SLGIKPNLVTYTILIDNVCNTKNLREA 65
Y+ +V CK Y ++ +L ++PN + Y LI C +++ A
Sbjct: 522 YSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRA 581
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + G PD Y ++ GY
Sbjct: 582 QLVFDMLVERGITPDVITYTMMINGY 607
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PDI TYN LV + +D + + G+KPN T+ +I+ +C ++
Sbjct: 447 RGIEPDIVTYNILVGGFSRNGLKKEALELLDCI-GTQGLKPNSATHNRIIEGLCMAGKVK 505
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ L D + Y+ ++ GY
Sbjct: 506 EAEAFLNTLEDKCLEN----YSAMVDGY 529
>gi|260780426|gb|ACX50759.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780428|gb|ACX50760.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780432|gb|ACX50762.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780434|gb|ACX50763.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780436|gb|ACX50764.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780438|gb|ACX50765.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780440|gb|ACX50766.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780442|gb|ACX50767.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780444|gb|ACX50768.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780446|gb|ACX50769.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780448|gb|ACX50770.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780450|gb|ACX50771.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780452|gb|ACX50772.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780454|gb|ACX50773.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780456|gb|ACX50774.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780458|gb|ACX50775.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780460|gb|ACX50776.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780462|gb|ACX50777.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780464|gb|ACX50778.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780466|gb|ACX50779.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780470|gb|ACX50781.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780472|gb|ACX50782.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780474|gb|ACX50783.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780476|gb|ACX50784.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780478|gb|ACX50785.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780480|gb|ACX50786.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780482|gb|ACX50787.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780486|gb|ACX50789.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780488|gb|ACX50790.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780490|gb|ACX50791.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780492|gb|ACX50792.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780494|gb|ACX50793.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780498|gb|ACX50795.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780500|gb|ACX50796.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780502|gb|ACX50797.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780504|gb|ACX50798.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + N+ +
Sbjct: 14 QVPPHAFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGNVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD ++ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTFSVVVNG 96
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T++ +V LCK + ++ + + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDAF 167
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K ++ + +M G KP++VT++++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRM-IDEGFKPDVVTFSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCQFNGLAINSMFYSSLIDG 131
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ L K + Y V +M G KPN++TY++L++ +C K L A+
Sbjct: 472 PTVVTYNTLINGLSKAERFSEAYALVKEMLQK-GWKPNMITYSLLMNGLCQGKKLDMALN 530
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + GFKPD ++N I+ G
Sbjct: 531 LWCQALEKGFKPDVKMHNIIIHG 553
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I +YN ++ LCKC + +M+ + + +L TY+ LI +C + NL A R
Sbjct: 228 PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ-DLYTYSTLIHGLCGSGNLDGATR 286
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++++G PD VYNT++ GY
Sbjct: 287 VYKEMAENGVSPDVVVYNTMLNGY 310
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ TY+ L+ LC+ + L N Q G KP++ + I+I +C++
Sbjct: 500 MLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK-GFKPDVKMHNIIIHGLCSSG 558
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A++L S + P+ +NT+M+G+
Sbjct: 559 KVEDALQLYSEMKQRNCVPNLVTHNTLMEGF 589
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TYN L+K C+ + ++ M G P++ +Y LI+++ + +A
Sbjct: 120 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQ-GFSPDVFSYGTLINSLAKNGYMSDA 178
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L + + G PD YN ++ G+
Sbjct: 179 LKLFDEMPERGVTPDVACYNILIDGF 204
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +YN L+ L + +F ++G+ PNL TY ILI C K +A
Sbjct: 87 PGIRSYNSLLNALIESNKWDEAESFFLYFE-TMGLSPNLQTYNILIKISCRKKQFDKAKE 145
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + GF PD F Y T++
Sbjct: 146 LLNWMWGQGFSPDVFSYGTLI 166
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ K R D + G++P++++Y I + +C+ + +A+
Sbjct: 577 PNLVTHNTLMEGFYKVRDFERASKIWDHI-LQYGLQPDIISYNITLKGLCSCHRISDAVG 635
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ D G P +N +++GY
Sbjct: 636 FLNDAVDRGVLPTAITWNILVQGY 659
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F Y+ ++ LC+ L V +DQM G KPN +I+ L +A+R
Sbjct: 403 DTFAYSSMINGLCREGRLDEVAGVLDQMTKH-GCKPNPYVCNAVINGFVRASKLEDALRF 461
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G P YNT++ G
Sbjct: 462 FGNMVSKGCFPTVVTYNTLING 483
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PDI +YN +K LC C ++ F++ G+ P +T+ IL+ K E
Sbjct: 610 LQPDIISYNITLKGLCSCHRISDAVGFLNDA-VDRGVLPTAITWNILVQGYLALKGYME 667
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++KC C + D+M + G PN++TY LI C NL AMR
Sbjct: 410 PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMR 468
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G KPD + Y ++ G+
Sbjct: 469 LLEIMKGNGLKPDAWTYTELISGF 492
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY L+ C+ +L + D+M G PN VTY+ LI+ +C+ L EAM
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKD-GCDPNSVTYSTLINGLCSEGRLEEAMD 293
Query: 68 LVSALSDSGFKPDCFVY 84
++ + G +P + Y
Sbjct: 294 MLEEMVQKGIEPTVYTY 310
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK +L ++ M+ + G+KP+ TYT LI L A
Sbjct: 445 PNVITYNTLIYGYCKQGNLNNAMRLLEIMKGN-GLKPDAWTYTELISGFSRGGKLEHATS 503
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ Y I+ GY
Sbjct: 504 LFYGMMEHGISPNHVTYTAIIDGY 527
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY L+ + L + M GI PN VTYT +ID N + +A
Sbjct: 478 LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH-GISPNHVTYTAIIDGYFNLAKVDDA 536
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + +SG P YN ++ G+
Sbjct: 537 LALFWKMVESGNLPSSQTYNVMISGF 562
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++ K S++ NF +M G+ PN++TYT ID +C A +
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKM-VKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + P+ + Y++++ G
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYG 631
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSL--TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P+++TY+ L+ LC+ +YN + ++ G +PN+ TYT L+ +C EA
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARL-THYGCEPNVDTYTTLVKGLCGEGRCYEA 678
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+LV ++ G +P +Y ++ G
Sbjct: 679 DQLVVSMQKKGLQPSEEIYRALLIG 703
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ LC T + M S G P+ TY +I C ++++A
Sbjct: 373 LVPTTVTYNALINQLCVEGRFETAFTIFKWM-LSHGSLPSTQTYNEIIKCFCLMGDIQKA 431
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + +G P+ YNT++ GY
Sbjct: 432 MVIFDKMLKAGSSPNVITYNTLIYGY 457
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ LC L + +++M GI+P + TYTI + ++C+ EA+
Sbjct: 270 PNSVTYSTLINGLCSEGRLEEAMDMLEEM-VQKGIEPTVYTYTIPLVSLCDAGCSSEAVE 328
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ + ++ G
Sbjct: 329 LLGKMKKRGCVPNIQTFTALISG 351
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P ++TY + LC + + +M+ G PN+ T+T LI +
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKR-GCVPNIQTFTALISGLSRDG 356
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L + G P YN ++
Sbjct: 357 KFEIAIGLYHKMLADGLVPTTVTYNALI 384
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N ++ LCK + + PN TYT LI C NL A
Sbjct: 200 PSLLTFNTMINILCK-KGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFA 258
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ Y+T++ G
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLING 281
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +N ++ CK + D M +G+KP+++TY+ LID C + EA +L
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++++ G KPDC YNT++ GY
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGY 559
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K L Y +M GI PN+VTY+ +I +C + + +AM
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILPNVVTYSSIIAALCKAQAMDKAM 254
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++++ +G P+C YN+I+ GY
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TY+ L+ C + + M S+G+KP+ VTY LI+ C + +A
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASM-VSVGMKPDCVTYNTLINGYCKISRMEDA 568
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + SG PD YN I++G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQG 593
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN +V C F+ +M + G++P++VTY L+D +C EA +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGY 349
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ TY+ ++ LCK +++ + M + G+ PN TY ++ C++
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLM 311
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAA 603
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 604 KELYVGITESGTQLELSTYNIILHG 628
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + L+K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 117 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDEN 176
Query: 61 NLREAMRLVSALSDSGFK--PDCFVYNTIMKGY 91
+EA+ L+ + D G PD Y T++ G+
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ LCK T D M G+KP + TY L+ L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEM 358
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAY 384
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI PN ++ILI +
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVD 391
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G PD Y T++
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L P YN L+ LC + +M GI + + + +ID+ C
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM-LDRGICLDTIFFNSIIDSHCKEG 493
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KPD Y+T++ GY
Sbjct: 494 RVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + ++ L+ K + +MR G+ P+ VTY +I +C +
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSG 423
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +AMR + D P VYN+++
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIH 452
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD TY ++ LCK + + +QM + P + Y LI ++C
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNIVYNSLIHSLCIFDKWD 461
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ + D G D +N+I+ +
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSH 489
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD TYN ++ LC L ++Q+ S +P ++TYTILI+ +
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL-LSDNCQPTVITYTILIEATMLEGGVD 245
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L+ + G KPD F YNTI++G
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRG 272
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD+ +YN L++ L + +M S PN+VTY+ILI +C
Sbjct: 289 LELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKM-FSEKCDPNVVTYSILITTLCRDG 347
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EAM L+ + + G PD + Y+ ++ +
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 378
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN ++ CLC+ + + + MR S P++VTY I++ C + +A
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMR-SCEFHPSVVTYNIVLLGFCKAHRIEDA 527
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ ++ +G +P+ Y +++G
Sbjct: 528 INVLESMVGNGCRPNETTYTVLIEG 552
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD ++Y+ L+ C+ L F++ M S G P++V Y ++ +C
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM-ISDGCLPDIVNYNTVLATLCKNGKAD 420
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
+A+ + L + G P+ YNT+
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTM 444
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + +D+M S G+KP++ TY +I +C + A
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEM-LSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V L G +PD YN +++
Sbjct: 285 MVRNLELKGSEPDVISYNILLRA 307
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + TYN ++ CK + N ++ M + G +PN TYT+LI+ + E
Sbjct: 503 EFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN-GCRPNETTYTVLIEGIGFAGYRAE 561
Query: 65 AMRL------VSALSDSGFK 78
AM L + A+S+ FK
Sbjct: 562 AMELANDLVRIDAISEYSFK 581
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC+ + N + M+ G+ P+ +Y LI C L A+
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIE 389
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD YNT++
Sbjct: 390 FLETMISDGCLPDIVNYNTVL 410
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 34/118 (28%)
Query: 8 PDIFTYNFLVKCLCK------------------CRSLTTVYNFV--------DQMRA--- 38
PDI YN ++ LCK C ++ YN + D++RA
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 39 -----SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S GI P+ +TY +I +C + EA L+ + F P YN ++ G+
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +N ++ CK + D M +G+KP+++TY+ LID C + EA +L
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++++ G KPDC YNT++ GY
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGY 559
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K L Y +M GI PN+VTY+ +I +C + + +AM
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILPNVVTYSSIIAALCKAQAMDKAM 254
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++++ +G P+C YN+I+ GY
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TY+ L+ C + + M S+G+KP+ VTY LI+ C + +A
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASM-VSVGMKPDCVTYNTLINGYCKISRMEDA 568
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + SG PD YN I++G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQG 593
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN +V C F+ +M + G++P++VTY L+D +C EA +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGY 349
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ TY+ ++ LCK +++ + M + G+ PN TY ++ C++
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLM 311
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAA 603
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 604 KELYVGITESGTQLELSTYNIILHG 628
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + ++K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 117 VIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDN 176
Query: 61 NLREAMRLVSALSDSGFK--PDCFVYNTIMKGY 91
+EA+ L+ + D G PD Y T++ G+
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ LCK T D M G+KP + TY L+ L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEM 358
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAY 384
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI PN ++ILI +
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVD 391
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G PD Y T++
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L P YN L+ LC + +M GI + + + +ID+ C
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM-LDRGICLDTIFFNSIIDSHCKEG 493
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KPD Y+T++ GY
Sbjct: 494 RVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + ++ L+ K + +MR G+ P+ VTY +I +C +
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSG 423
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +AMR + D P VYN+++
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIH 452
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD TY ++ LCK + + +QM + P + Y LI ++C
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNIVYNSLIHSLCIFDKWD 461
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ + D G D +N+I+ +
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSH 489
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+QL PD YN L+ LCK + L N +++M + P+ YT LID ++L
Sbjct: 498 RQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQ-NVHPDKYVYTTLIDGFIRNESLD 556
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G PD YN ++KGY
Sbjct: 557 EARKIFEFMEQKGIHPDVVGYNAMIKGY 584
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++LPP++ YN ++ LCKCRS + + QM A G P+ +T++ LI +C ++
Sbjct: 358 RRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAG-GCDPDAITFSTLISGLCQEGRVQ 416
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL+ + P+ Y +++ G+
Sbjct: 417 EAERLLRETTRWELNPNLSSYTSLIHGF 444
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P + TY L+ L + L + + + +MR + PN+ Y +ID +C ++
Sbjct: 323 KGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERR-LPPNVQIYNSVIDALCKCRSAS 381
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ ++ + G PD ++T++ G
Sbjct: 382 QALVVLKQMFAGGCDPDAITFSTLISG 408
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L+ L ++ V + A+ + P+ Y +LI +C K L A
Sbjct: 467 PDVVTFGALIHGLVVAGQVSEAL-LVREKMAARQLLPDANIYNVLISGLCKKKMLPAARN 525
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + PD +VY T++ G+
Sbjct: 526 LIEEMLEQNVHPDKYVYTTLIDGF 549
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK---------CRSLTTVYN---FVDQMRASLGIK--PNL 46
++ Q P+ +T + LV LC C S ++ +D RA + + P
Sbjct: 705 MLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRN 764
Query: 47 VTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
Y +I ++C L EA+ L + +++ G+KPD + +++ G+
Sbjct: 765 SAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGF 809
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 35 QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ R G PN V Y +LID C ++ + L+ + G P Y T+M
Sbjct: 283 EARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLM 336
>gi|260780468|gb|ACX50780.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780484|gb|ACX50788.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + N+ +
Sbjct: 14 QVPPHAFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGNVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD ++ ++ G
Sbjct: 71 AIRLLHRMIDEGFKPDVVTFSVVVNG 96
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T++ +V LCK + ++ + + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALIDAF 167
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K ++ + +M G KP++VT++++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRM-IDEGFKPDVVTFSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCQFNGLAINSMFYSSLIDG 131
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ L K + L + ++M+ GI PNL TY LI ++ EA
Sbjct: 1086 LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEA 1144
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ L G+KP+ F YN +++GY
Sbjct: 1145 GKMYEELLTKGWKPNVFTYNALIRGY 1170
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDI +Y ++ LCK L + Q+ +G++P+L+TY +LID + +K
Sbjct: 1046 MVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL-LEMGLEPDLITYNLLIDGLGKSK 1104
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA+ L + + G P+ + YN+++
Sbjct: 1105 RLEEAVSLFNEMQKKGIVPNLYTYNSLI 1132
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ L+ K R + TV + +M A G+KPN+ +YTI I + K EA R
Sbjct: 318 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAH-GVKPNVYSYTICIRVLGQAKRFDEAYR 376
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+++ + + G KPD + +++
Sbjct: 377 ILAKMENEGCKPDVITHTVLIQ 398
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ L + + V + +++M S PNL+TY ++D +C + +A
Sbjct: 666 LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHS-NYPPNLITYNTILDCLCKNGAVNDA 724
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ +++ G PD YNT++ G
Sbjct: 725 LDMLYSMTTKGCIPDLSSYNTVIYG 749
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++++Y ++ L + + Y + +M G KP+++T+T+LI +C+ + +A
Sbjct: 353 PNVYSYTICIRVLGQAKRFDEAYRILAKMENE-GCKPDVITHTVLIQVLCDAGRISDAKD 411
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + S KPD Y T++ +
Sbjct: 412 VFWKMKKSDQKPDRVTYITLLDKF 435
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 31 NFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ VDQ GI P++ +YTI+ID +C L + + L + G +PD YN ++ G
Sbjct: 1045 DMVDQ-----GINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG 1099
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ + K + + ++M G + VTY +I + ++ L +A+
Sbjct: 913 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRK-GYESTYVTYNTIISGLVKSRRLEQAID 971
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L GF P Y ++ G
Sbjct: 972 LYYNLMSQGFSPTPCTYGPLLDG 994
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +V + M+A G N+V YT +ID +C + EA+
Sbjct: 423 PDRVTYITLLDKFGDNGDSQSVMEIWNAMKAD-GYNDNVVAYTAVIDALCQVGRVFEALE 481
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ + YN+++ G+
Sbjct: 482 MFDEMKQKGIVPEQYSYNSLISGF 505
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 12 TYNFLVKCLCKCRSLTTV----YNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
TYN ++ L K R L YN + Q G P TY L+D + + +A
Sbjct: 952 TYNTIISGLVKSRRLEQAIDLYYNLMSQ-----GFSPTPCTYGPLLDGLLKAGRIEDAEN 1006
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + + G K +C +YN ++ G+
Sbjct: 1007 LFNEMLEYGCKANCTIYNILLNGH 1030
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L++ LC ++ + +M+ S KP+ VTY L+D + + + M
Sbjct: 388 PDVITHTVLIQVLCDAGRISDAKDVFWKMKKS-DQKPDRVTYITLLDKFGDNGDSQSVME 446
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +A+ G+ + Y ++
Sbjct: 447 IWNAMKADGYNDNVVAYTAVI 467
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ N L+ L K + Q++ + ++P TY L+ + ++E M
Sbjct: 633 PDVLAVNSLIDTLYKAGRGDEAWRIFYQLK-EMNLEPTDGTYNTLLAGLGREGKVKEVMH 691
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + S + P+ YNTI+
Sbjct: 692 LLEEMYHSNYPPNLITYNTIL 712
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSL-TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD TY ++KC K V F D + + P+++ LID + EA
Sbjct: 598 PDTITYTMMIKCCSKASKFDEAVKIFYDMIENN--CVPDVLAVNSLIDTLYKAGRGDEAW 655
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
R+ L + +P YNT++ G
Sbjct: 656 RIFYQLKEMNLEPTDGTYNTLLAG 679
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ N ++ L K L +++A +G+ P+ +TYT++I
Sbjct: 559 KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKA-MGVSPDTITYTMMIKCCSKASKFD 617
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+++ + ++ PD N+++
Sbjct: 618 EAVKIFYDMIENNCVPDVLAVNSLI 642
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++KC C + D+M + G PN++TY LI C NL AMR
Sbjct: 410 PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMR 468
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G KPD + Y ++ G+
Sbjct: 469 LLEIMKGNGLKPDAWTYTELISGF 492
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY L+ C+ +L + D+M G PN VTY+ LI+ +C+ L EAM
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKD-GCDPNSVTYSTLINGLCSEGRLEEAMD 293
Query: 68 LVSALSDSGFKPDCFVY 84
++ + G +P + Y
Sbjct: 294 MLEEMVQKGIEPTVYTY 310
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK +L ++ M+ + G+KP+ TYT LI L A
Sbjct: 445 PNVITYNTLIYGYCKQGNLNNAMRLLEIMKGN-GLKPDAWTYTELISGFSRGGKLEHATS 503
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ Y I+ GY
Sbjct: 504 LFYGMMEHGISPNHVTYTAIIDGY 527
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY L+ + L + M GI PN VTYT +ID N + +A
Sbjct: 478 LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH-GISPNHVTYTAIIDGYFNLAKVDDA 536
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + +SG P YN ++ G+
Sbjct: 537 LALFWKMVESGNLPSSQTYNVMISGF 562
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN ++ K S++ NF +M G+ PN++TYT ID +C A +
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKM-VKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + P+ + Y++++ G
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYG 631
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSL--TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P+++TY+ L+ LC+ +YN + ++ G +PN+ TYT L+ +C EA
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARL-THYGCEPNVDTYTTLVKGLCGEGRCYEA 678
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+LV ++ G +P +Y ++ G
Sbjct: 679 DQLVVSMQKKGLQPSEEIYRALLIG 703
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ LC T + M S G P+ TY +I C ++++A
Sbjct: 373 LVPTTVTYNALINQLCVEGRFETAFTIFKWM-LSHGSLPSTQTYNEIIKCFCLMGDIQKA 431
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + +G P+ YNT++ GY
Sbjct: 432 MVIFDKMLKAGSSPNVITYNTLIYGY 457
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ LC L + +++M GI+P + TYTI + ++C+ EA+
Sbjct: 270 PNSVTYSTLINGLCSEGRLEEAMDMLEEM-VQKGIEPTVYTYTIPLVSLCDAGCSSEAVE 328
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ + ++ G
Sbjct: 329 LLGKMKKRGCVPNIQTFTALISG 351
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P ++TY + LC + + +M+ G PN+ T+T LI +
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKR-GCVPNIQTFTALISGLSRDG 356
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L + G P YN ++
Sbjct: 357 KFEIAIGLYHKMLADGLVPTTVTYNALI 384
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N ++ LCK + + PN TYT LI C NL A
Sbjct: 200 PSLLTFNTMINILCK-KGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFA 258
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ Y+T++ G
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLING 281
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLT-TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L P+ T+ L+ CK + + NF QM + G++P+LVTY LI+ +C +L
Sbjct: 347 RGLVPNGVTFTTLIDGQCKGGKVDLALKNF--QMMLAQGVRPDLVTYNALINGLCKVGDL 404
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA RLV+ ++ SG KPD + T++ G
Sbjct: 405 KEARRLVNEMTASGLKPDKITFTTLIDG 432
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ TYN L+ LCK L V++M AS G+KP+ +T+T LID C
Sbjct: 379 MLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTAS-GLKPDKITFTTLIDGCCKDG 437
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A+ + + + G + D + ++ G
Sbjct: 438 DMESALEIKRRMVEEGIELDDVAFTALISG 467
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT++ L+ LCK L D+M G+ PN VT+T LID C + A++
Sbjct: 316 PDVFTFSALINGLCKEGRLDEGSLLFDEM-CGRGLVPNGVTFTTLIDGQCKGGKVDLALK 374
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G +PD YN ++ G
Sbjct: 375 NFQMMLAQGVRPDLVTYNALING 397
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I+ +N L+ CK + D++ G++P +V++ LI C + ++ E
Sbjct: 245 PPKIYFFNVLMHGFCKAGDVGNARLVFDEI-PKRGLRPTVVSFNTLISGCCKSGDVEEGF 303
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + G PD F ++ ++ G
Sbjct: 304 RLKGVMESEGVCPDVFTFSALING 327
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ C CK + + + +M++ G P +VTY L++ +C ++ A
Sbjct: 491 PDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSD-GHVPGVVTYNALMNGLCKQGQMKNAKM 549
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ A+ + G P+ YN ++ G+
Sbjct: 550 LLDAMLNVGVAPNDITYNILLDGH 573
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + L+ LC+ + + M S G KP+ TYT++ID C +++ +L
Sbjct: 457 DDVAFTALISGLCREGRVHDAGRMLTDM-LSAGFKPDDPTYTMVIDCFCKKGDVKMGFKL 515
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G P YN +M G
Sbjct: 516 LKEMQSDGHVPGVVTYNALMNG 537
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN L+ LCK L + +++M+ G +PN++TYTILID C L EA
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIK-GCEPNVITYTILIDRFCKEGRLEEARN 445
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ +S G + YN ++
Sbjct: 446 VLDEMSGKGLALNAVGYNCLI 466
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P D TYN L+K LC+ ++ + M S G+ PN ++ ILI+ +C T
Sbjct: 555 MLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM-MSKGLNPNNISCNILINGLCRTG 613
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++ A+ + + G PD YN+++ G
Sbjct: 614 NIQHALEFLRDMIHRGLTPDIVTYNSLING 643
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY L+ CK L N +D+M G+ N V Y LI +C + ++
Sbjct: 418 KGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK-GLALNAVGYNCLISALCKDEKVQ 476
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + +S G KPD F +N+++ G
Sbjct: 477 DALNMFGDMSSKGCKPDIFTFNSLIFG 503
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI TYN L+ LCK N D+++ GI P+ +TY LI C
Sbjct: 625 MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE-GICPDAITYNTLISWHCKEG 683
Query: 61 NLREAMRLVSALSDSGFKPD 80
+A L+S DSGF P+
Sbjct: 684 MFDDAHLLLSRGVDSGFIPN 703
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ + N L+ LC+ ++ F+ M G+ P++VTY LI+ +C T
Sbjct: 590 MMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM-IHRGLTPDIVTYNSLINGLCKTG 648
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ L L G PD YNT++ +
Sbjct: 649 RAQEALNLFDKLQVEGICPDAITYNTLISWH 679
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N + LCK + VD+M G PN TY +L+ +C + EA
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR-GFTPNSFTYGVLMHGLCRMGKVDEARM 343
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + P+ ++NT++ GY
Sbjct: 344 LLNKVPN----PNVVLFNTLINGY 363
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDIFT+N L+ LCK M G+ N +TY LI ++
Sbjct: 488 KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE-GVIANTITYNTLIHAFLRRGAMQ 546
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++LV+ + G D YN ++K
Sbjct: 547 EALKLVNDMLFRGCPLDDITYNGLIKA 573
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + YN L+ LCK + N M +S G KP++ T+ LI +C
Sbjct: 453 KGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSKGCKPDIFTFNSLIFGLCKVNKFE 511
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + G + YNT++ +
Sbjct: 512 EALGLYQDMLLEGVIANTITYNTLIHAF 539
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI--KPNLVTYTILIDNVCN 58
++ + P+ FTY L+ LC+ VD+ R L PN+V + LI+ +
Sbjct: 313 MLLRGFTPNSFTYGVLMHGLCRMGK-------VDEARMLLNKVPNPNVVLFNTLINGYVS 365
Query: 59 TKNLREAMRLV-SALSDSGFKPDCFVYNTIMKG 90
L EA ++ ++ G PD F YNT++ G
Sbjct: 366 RGRLDEAKAVMHESMLSVGCGPDIFTYNTLILG 398
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ L K + V + + +G P++ T+ I +C + EA +
Sbjct: 250 PNAIVYQTLIHALXKVGRVNEVLKLL-EEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAK 308
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + GF P+ F Y +M G
Sbjct: 309 LVDRMLLRGFTPNSFTYGVLMHG 331
>gi|242049534|ref|XP_002462511.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
gi|241925888|gb|EER99032.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
Length = 643
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 35/120 (29%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT--------------- 50
+ P++ TYN LVK C R+L + V +MRA G++P++VTY
Sbjct: 209 IKPNLTTYNILVKAWCDRRNLEEAWGVVGKMRAG-GVEPDIVTYNTIASAYANNDETWRA 267
Query: 51 -------------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I+I C L EA+R V + D+G P+ ++NT++KG+
Sbjct: 268 EELIVEIQTRVRTSERTWGIIIGGYCRESRLEEALRCVQQMKDAGIVPNVVIFNTLLKGF 327
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 38/84 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T+N L+K D M IKPNL TY IL+ C+ +NL EA
Sbjct: 175 PTTSTFNTLIKGYGIVGKPEESQRVFDMMGIEGSIKPNLTTYNILVKAWCDRRNLEEAWG 234
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + G +PD YNTI Y
Sbjct: 235 VVGKMRAGGVEPDIVTYNTIASAY 258
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD Y+ L K + + + + QM + LG+ PN+VT+T +I C+
Sbjct: 378 MIEAGIEPDPQVYSILAKGFVRAKQPEKAEDLLLQM-SHLGVCPNVVTFTTVISGWCSVA 436
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ AMR+ + SG P+ + T++ GY
Sbjct: 437 DMESAMRVYEKMCKSGVYPNLRTFETLIWGY 467
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +N L+K + V N + M GIKP++VTY+ ++ + ++ + M+
Sbjct: 315 PNVVIFNTLLKGFLDVNDMAAVNNILGLME-QFGIKPDIVTYSHQLNTFSSLGHMAKCMK 373
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + ++G +PD VY+ + KG+
Sbjct: 374 VFDKMIEAGIEPDPQVYSILAKGF 397
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK L P + TY L+ L R ++ + + Q+ + GI+P+ + + LI+
Sbjct: 94 VFKHLMEEGHKPSLVTYTILLTALTNQRMFESIPSLLAQVELA-GIRPDSIFFNALINAF 152
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
K + EA+ + SG P +NT++KGY
Sbjct: 153 VEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGY 187
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TY+ + + D+M + GI+P+ Y+IL K +A
Sbjct: 348 IKPDIVTYSHQLNTFSSLGHMAKCMKVFDKMIEA-GIEPDPQVYSILAKGFVRAKQPEKA 406
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S G P+ + T++ G+
Sbjct: 407 EDLLLQMSHLGVCPNVVTFTTVISGW 432
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + TYN L+ K L YN +D+M+ + G KP++VTY+ LI + L
Sbjct: 248 RGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRN-GCKPDVVTYSCLITGLIKASQLD 306
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +++ + G PD YNT++ G
Sbjct: 307 EACQVLKKMEKEGCPPDTITYNTLING 333
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+++TYN LV CL K + +MR + G P++ TY LI + L
Sbjct: 73 KGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDN-GCVPDVRTYNCLISTLGKAGRLS 131
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + + + G PD F YN+++ G
Sbjct: 132 EAFTLFAEMRERGCVPDTFTYNSLIYG 158
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L+F++L PD+ +Y+ L+ L + V +M+A G KPNL TY L+D
Sbjct: 30 LLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAK-GCKPNLWTYNTLVDC 88
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+RL++ + D+G PD YN ++
Sbjct: 89 LGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI 121
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TY+ L+ L K + +M+ G KP+ +T+T L+D + + +A+
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRR-GRKPDSITFTALMDALGKAGRVDDAL 239
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G KP YN ++ G+
Sbjct: 240 ELLDEMKERGVKPGVVTYNALIAGF 264
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD TYN L+ L K L D+M+ S G P++VTY+ LI + + A
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMK-SKGCNPDVVTYSTLITALGKAARVESAC 379
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L + G +PD F Y +I+
Sbjct: 380 VLFEEMESVGIQPDLFTYCSII 401
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L+ L K + +D+M+ G+KP +VTY LI +L EA
Sbjct: 217 PDSITFTALMDALGKAGRVDDALELLDEMKER-GVKPGVVTYNALIAGFGKVGDLVEAYN 275
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G KPD Y+ ++ G
Sbjct: 276 LLDEMKRNGCKPDVVTYSCLITG 298
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ L K + + ++M S+GI+P+L TY +I + + +A R
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEME-SVGIQPDLFTYCSIITVLGKAGQVDDADR 415
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L S + G PD YN +
Sbjct: 416 LFSEMRGKGLSPDVITYNAFL 436
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTY ++ L K + +MR G+ P+++TY ++++ +EA
Sbjct: 390 IQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGK-GLSPDVITYNAFLNSLGRGGRFKEA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + +SG PD Y+ ++ G
Sbjct: 449 RKIFEDMKESGLLPDVATYDALLLG 473
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ L K L+ + +MR G P+ TY LI + ++AM
Sbjct: 112 PDVRTYNCLISTLGKAGRLSEAFTLFAEMRER-GCVPDTFTYNSLIYGLGKVGRSQKAME 170
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G PD Y++++ G
Sbjct: 171 LLEEMERHGCPPDVMTYSSLITG 193
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ L K L + +M G P+ +TY LI+ + L +A R
Sbjct: 287 PDVVTYSCLITGLIKASQLDEACQVLKKMEKE-GCPPDTITYNTLINGLGKAGLLNDAGR 345
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G PD Y+T++
Sbjct: 346 LFDRMKSKGCNPDVVTYSTLI 366
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ L K ++++A+ P++V+Y+ LI+++ A+
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAA-KWTPDVVSYSCLINSLGRAGKWEAALE 65
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V+ + G KP+ + YNT++
Sbjct: 66 VVAEMQAKGCKPNLWTYNTLV 86
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ L K +++M G P+++TY+ LI + +A +
Sbjct: 147 PDTFTYNSLIYGLGKVGRSQKAMELLEEMERH-GCPPDVMTYSSLITGLGKDGETVKAFK 205
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G KPD + +M
Sbjct: 206 LFQEMKRRGRKPDSITFTALM 226
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P +YN L+ L K ++ +N ++ ++ G KP++V+Y+ LI + T +
Sbjct: 528 KGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGG-KPDIVSYSSLISALGQTGQID 586
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
A L+ +S G K Y+ +++
Sbjct: 587 TAFELLEEMSKRGLKLSPRSYSNLVR 612
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TYN + L + + M+ S G+ P++ TY L+ + TK +
Sbjct: 423 KGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKES-GLLPDVATYDALLLGLSKTKEVD 481
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A L+ L + G D ++ ++
Sbjct: 482 DACGLLKELIEQGCAFDSLKFDECLE 507
Score = 34.3 bits (77), Expect = 9.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 22 KCRSLTTVYNFVD------QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+C + T + VD Q S G+ P +Y LID + + EA + L +
Sbjct: 504 ECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQ 563
Query: 76 GFKPDCFVYNTIM 88
G KPD Y++++
Sbjct: 564 GGKPDIVSYSSLI 576
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 60.8 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+K CK R +T + +M+ + G P + TY +ID T ++R A
Sbjct: 367 IEPDWVTYNILLKAFCKSRQMTRAIQLLGRMK-TRGCSPTIQTYITIIDGFMKTGDVRMA 425
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ VS + +G +P+ YN IM
Sbjct: 426 YKTVSEMKLAGCRPNATTYNVIM 448
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TY L+ K + F +M+A GI N TY++L+D + A
Sbjct: 297 LSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQ-GITLNRNTYSMLVDGYVQLGDFANA 355
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +S++G +PD YN ++K +
Sbjct: 356 FSVFEDMSEAGIEPDWVTYNILLKAF 381
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY+ LV + ++ + M + GI+P+ VTY IL+ C ++ + A++L+
Sbjct: 338 TYSMLVDGYVQLGDFANAFSVFEDM-SEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGR 396
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G P Y TI+ G+
Sbjct: 397 MKTRGCSPTIQTYITIIDGF 416
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +Y V CK + +++M+ ++PNL TYTILI + + +A+
Sbjct: 579 PDIHSYTSFVNACCKAGDMQKATETIEEMKQQ-DLQPNLQTYTILIHGWTSVSHPEKALI 637
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +G PD +Y I+
Sbjct: 638 CYDEMKAAGLIPDKPLYYCIV 658
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q PP I +Y L+K CK + ++M A G+ N + L+D ++ E
Sbjct: 507 QKPP-IISYASLLKACCKAGRMQNAIAVTEEM-AFAGVPMNNYIFNTLLDGWAQRGDMWE 564
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A ++ + GF PD Y + +
Sbjct: 565 AYGIMQKMRQEGFTPDIHSYTSFV 588
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ L + + + +D+M + G++PN +YT L+ + + A +
Sbjct: 439 PNATTYNVIMHNLVQLGQIDRAASVIDEMELA-GVQPNFRSYTTLMQGFASIGEIGLAFK 497
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +++ KP Y +++K
Sbjct: 498 CLKRVNEITQKPPIISYASLLKA 520
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K L PD++T+N L+ LCK ++M++S G P+ VTY ILID++C+
Sbjct: 398 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSS-GCTPDEVTYNILIDHLCSMG 456
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A+ L++ + +G YNTI+
Sbjct: 457 KLGNALDLLNEMESNGCPRSTVTYNTII 484
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN ++ LCK + DQM A GI + VT+ LID +C K + +A
Sbjct: 474 PRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQ-GISRSAVTFNTLIDGLCKAKRIDDAT 532
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G +P+ YN+I+ Y
Sbjct: 533 ELIEQMVKEGLQPNNITYNSILTHY 557
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN ++ CL K L V+QM G P+ T+ LI + + L EA+
Sbjct: 335 PDVFTYNTVINCLSKNGELDEAKGIVNQM-VDRGCLPDTTTFNTLIVALSSQNRLEEALD 393
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L L+ G PD + +N ++
Sbjct: 394 LARELTVKGLSPDVYTFNILI 414
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ LCK + + ++QM G++PN +TY ++ + C N+++A ++
Sbjct: 514 TFNTLIDGLCKAKRIDDATELIEQM-VKEGLQPNNITYNSILTHYCKQGNIKKAADILET 572
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +GF+ D Y T++ G
Sbjct: 573 MTANGFEIDVVTYGTLING 591
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ T N L+K LC+ + T +++M +S G+ P+ T+T L+ ++
Sbjct: 191 RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM-SSHGVAPDETTFTTLMQGFIEEGSIE 249
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+R+ + + ++G P N ++ GY
Sbjct: 250 AALRVKAKMMEAGCSPTGVTVNVLINGY 277
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 1 LIFKQLPPDIF-------TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILI 53
L+ QL D F +N L+ L + L + + ++M GI+P++VT LI
Sbjct: 146 LVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGR-GIQPDVVTLNTLI 204
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C +R A+ ++ +S G PD + T+M+G+
Sbjct: 205 KALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGF 242
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T N L+ CK + ++ Q A G +P+ VTY + +C ++ A++
Sbjct: 265 PTGVTVNVLINGYCKMGRVEDALGYIQQEIAD-GFEPDQVTYNTFVHGLCQNGHVSHALK 323
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G PD F YNT++
Sbjct: 324 VMDLMLQEGHDPDVFTYNTVI 344
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC L + +++M ++ G + VTY +ID +C + EA
Sbjct: 440 PDEVTYNILIDHLCSMGKLGNALDLLNEMESN-GCPRSTVTYNTIIDALCKKMRIEEAEE 498
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G +NT++ G
Sbjct: 499 VFDQMDAQGISRSAVTFNTLIDG 521
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L+ LCK + MR GI+P Y +I ++ NLR+A+ L
Sbjct: 581 DVVTYGTLINGLCKAGRTQVALKLLRGMRIK-GIRPTPKAYNPVIQSLFRRNNLRDALNL 639
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+++ G PD Y + +
Sbjct: 640 FREMTEVGEPPDALTYKIVFR 660
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN V LC+ ++ +D M G P++ TY +I+ + L EA
Sbjct: 300 PDQVTYNTFVHGLCQNGHVSHALKVMDLMLQE-GHDPDVFTYNTVINCLSKNGELDEAKG 358
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V+ + D G PD +NT++
Sbjct: 359 IVNQMVDRGCLPDTTTFNTLI 379
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ TYN ++ CK ++ + ++ M A+ G + ++VTY LI+ +C
Sbjct: 538 MVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTAN-GFEIDVVTYGTLINGLCKAG 596
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A++L+ + G +P YN +++
Sbjct: 597 RTQVALKLLRGMRIKGIRPTPKAYNPVIQ 625
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++FT+N ++ LC+ L+ + +D + G+ P++VTY LI +C N+
Sbjct: 245 KGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIRE-GLTPDVVTYNTLICGLCKNSNVV 303
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + L + G +PD F YNT++ GY
Sbjct: 304 EAEKYLHKLVNGGLEPDGFTYNTLIDGY 331
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD+ TYN L+ LCK ++ ++ ++ + G++P+ TY LID C
Sbjct: 277 VIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKL-VNGGLEPDGFTYNTLIDGYCKMG 335
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L+ A +++ GF PD F Y +++ G
Sbjct: 336 MLQNAEKILQGAICKGFVPDEFTYCSLING 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L PD FTYN L+ CK L + Q G P+ TY LI+ +C
Sbjct: 312 LVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKIL-QGAICKGFVPDEFTYCSLINGLCQND 370
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L +A G KP +YN ++KG
Sbjct: 371 EIDRALALFNAALGKGLKPTVILYNMLIKG 400
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P + YN L+K LC+ + +++M + G ++ TY ++I+ +C +
Sbjct: 385 KGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSEN-GCSSDIWTYNLVINGLCKMGCVS 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L++ G+ PD F +NT++ GY
Sbjct: 444 DANNLMNDAIAKGYVPDVFTFNTLIDGY 471
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN ++ LCK ++ N ++ A G P++ T+ LID C + +++
Sbjct: 425 DIWTYNLVINGLCKMGCVSDANNLMNDAIAK-GYVPDVFTFNTLIDGYCKQLKMETTIQI 483
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + G PD YN+++ G
Sbjct: 484 LNKMWSHGVTPDVITYNSVLNG 505
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ L K + + M G PN +TY IL +++C + EA+
Sbjct: 494 PDVITYNSVLNGLSKAVKNEDLMETFETM-VEKGCVPNKITYNILTESLCKAGKVNEALD 552
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV + + G PD + TI+ G+
Sbjct: 553 LVDEILNKGITPDTVSFATIISGF 576
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K PD FTY L+ LC+ + + G+KP ++ Y +LI +C
Sbjct: 348 ICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGK-GLKPTVILYNMLIKGLCQEGL 406
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+++++ +S++G D + YN ++ G
Sbjct: 407 ILQALQMMNEMSENGCSSDIWTYNLVING 435
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F P + +YN ++ L + + +M+ ++GI P++ T+TI I + C TK
Sbjct: 104 FYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMK-NVGIVPDVYTFTIRIKSFCRTKRP 162
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL++ + G + + Y T++ G+
Sbjct: 163 HSALRLLNNMVSQGCQLNAVAYCTVVAGF 191
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ TYN L + LCK + + VD++ + GI P+ V++ +I N
Sbjct: 522 MVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEI-LNKGITPDTVSFATIISGFANNG 580
Query: 61 NLREAMRLVSALSDS 75
+L+ A +L + +
Sbjct: 581 DLKGAYQLFRRMGEQ 595
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD +TY ++ C + + Y F+ +M G P+L T+ +I+ +C + EA+
Sbjct: 634 APDTYTYRVMIDGFCITGNTDSGYKFLLEMIEK-GFIPSLTTFGRVINCLCVQHRVHEAV 692
Query: 67 RLVSALSDSGFKPDCFVYNTI 87
++ + +G P+ V N+I
Sbjct: 693 DIIHFMVHNGIVPE--VVNSI 711
>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 576
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
++ PD+ TYN L+ LC L +DQ+ P ++TYTILI+ ++
Sbjct: 174 YRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLED-NCNPTVITYTILIEATIIHGSI 232
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AMRL+ + G +PD + YN I++G
Sbjct: 233 DDAMRLLDEMMSRGLQPDMYTYNVIVRG 260
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 31/122 (25%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS--------------------- 39
++ + L PD++TYN +V+ +CK + + FV + +
Sbjct: 242 MMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEA 301
Query: 40 ----------LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
G +PN+VTY++LI ++C EA+ ++ + + G PD + Y+ ++
Sbjct: 302 GERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLIS 361
Query: 90 GY 91
+
Sbjct: 362 AF 363
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD + Y+ L+ CK + FVD M S G P++V Y ++ ++C
Sbjct: 347 KGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDM-ISAGWLPDIVNYNTIMGSLCKKGRAD 405
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
EA+ + L + G P+ YNT+
Sbjct: 406 EALNIFKKLEEVGCPPNASSYNTM 429
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P+I TY+ L+ LC+ + + M+ G+ P+ Y LI C
Sbjct: 309 MIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEK-GLNPDAYCYDPLISAFCKEG 367
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ V + +G+ PD YNTIM
Sbjct: 368 KVDLAIGFVDDMISAGWLPDIVNYNTIM 395
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLC----KCRSLTTVYNFVDQMRASLGIKPNLVTYTIL 52
IFK+L PP+ +YN + L K R+LT + + S G+ P+ +TY L
Sbjct: 410 IFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEML-----SNGVDPDRITYNSL 464
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
I ++C + EA+ L+ + + ++P YN ++ G
Sbjct: 465 ISSLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLLG 502
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 20 LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKP 79
LCK T F++QM G KP+++ T LI + +K +A+R++ L G P
Sbjct: 87 LCKTGKYTEALYFLEQM-VKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG-DP 144
Query: 80 DCFVYNTIMKGY 91
D F YN ++ G+
Sbjct: 145 DSFAYNAVISGF 156
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD TYN L+ LC+ + VD R +P +++Y I++ +C + +A+
Sbjct: 456 PDRITYNSLISSLCRDGMVDEAIGLLVDMERTEW--QPTVISYNIVLLGLCKAHRIVDAI 513
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + D+G +P+ Y +++G
Sbjct: 514 EVLAVMVDNGCQPNETTYTLLVEG 537
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ CK L Y QM A+ + P++VT+T L+D +C + +A+
Sbjct: 320 PDVITYTTLMSAFCKMGRLDDAYELFQQMVAN-KLSPDVVTFTSLVDGLCGEGRMEDALE 378
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G P + YN ++ GY
Sbjct: 379 LLEEITRRGCPPTIYTYNCVVDGY 402
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ ++ LCK L + ++M + P +TY LI C ++ EA+R
Sbjct: 253 PDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA----PTAITYNSLIGGYCRAGDMDEAIR 308
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D PD Y T+M +
Sbjct: 309 LLGKMVDDNCAPDVITYTTLMSAF 332
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + + TY+ LV LCKC L + G P++VTY+ +ID +C
Sbjct: 210 MLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAG 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LR+A+ + +S + P YN+++ GY
Sbjct: 270 RLRDAVDIFEEMSCA---PTAITYNSLIGGY 297
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +L PD+ T+ LV LC + ++++ G P + TY ++D C +
Sbjct: 348 MVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI-TRRGCPPTIYTYNCVVDGYCKSN 406
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+R+A LV+ GF P+ YN ++ G
Sbjct: 407 QVRKAEELVADFRSRGFVPNTVTYNILVAG 436
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I+TYN +V CK + V R S G PN VTY IL+ C +A+
Sbjct: 389 PPTIYTYNCVVDGYCKSNQVRKAEELVADFR-SRGFVPNTVTYNILVAGCCRAGRTDQAL 447
Query: 67 RLVSALSDSG 76
+ + L+ G
Sbjct: 448 QYLDQLNSEG 457
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD N ++ LC R TT D+M A LG N TY LI +C + L
Sbjct: 40 RGLSPDPVELNTILAELCDARDTTTAMALFDKM-AELG-AVNHTTYYNLIHPLCKARLLD 97
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ + G P ++N ++ G
Sbjct: 98 EAMGLLLDMKSRGMNPGTLLHNVVIGG 124
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 39/128 (30%)
Query: 2 IFKQL----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS------------------ 39
+++Q+ PPD TY LV L K L + +M ++
Sbjct: 137 VYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCL 196
Query: 40 ----------------LGIKPNLVTYTILIDNVCNTKNLREAMR-LVSALSDSGFKPDCF 82
G+ N +TY+ L+D +C + L EA+ L+ ++ GF PD
Sbjct: 197 GDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIV 256
Query: 83 VYNTIMKG 90
Y+T++ G
Sbjct: 257 TYSTVIDG 264
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT-YTILIDNVCNTKNLREAM 66
P+ TYN LV C+ ++DQ+ + G P V Y I++D +C +A+
Sbjct: 425 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 484
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+ + G+ P + T++
Sbjct: 485 QFYEEMIQRGYVPAAATFATVV 506
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D+++++ L+ C C+C L+ + + +M LG +P++VT+ L++ C+ ++EA
Sbjct: 104 ISHDLYSFSTLIDCFCRCSRLSLALSCLGKM-MKLGFEPSIVTFGSLVNGFCHVNRIQEA 162
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M LV + G++P+ +YNTI+
Sbjct: 163 MSLVDQIVGLGYEPNVVIYNTII 185
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL------GIKPNLVTYTILID 54
+I + + P+I TYN L+ LC ++ +D+ + L G PN VTY L++
Sbjct: 274 MIQRSVDPNIVTYNSLINGLC-------IHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVN 326
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C +K + +AM+++ +S G D F YNT+ +GY
Sbjct: 327 GYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGY 363
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P I T+ LV C + + VDQ+ LG +PN+V Y +ID++C + + A+
Sbjct: 140 EPSIVTFGSLVNGFCHVNRIQEAMSLVDQI-VGLGYEPNVVIYNTIIDSLCENRQVDTAL 198
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+++ + G +PD YN+++
Sbjct: 199 DVLNHMEKMGIRPDVITYNSLI 220
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+T+N L+ LC+ + ++ ++ S + ++TY I+I +C + +A
Sbjct: 386 PDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETV-VGIITYNIIIKGMCKANKVEDAWY 444
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +L+ G PD Y T+M G
Sbjct: 445 LFCSLALKGVSPDVITYTTMMIG 467
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ YN ++ LC+ R + T + ++ M +GI+P+++TY LI + ++ +
Sbjct: 175 EPNVVIYNTIIDSLCENRQVDTALDVLNHME-KMGIRPDVITYNSLITRLFHSGKWGVSA 233
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
R++S + G PD ++ ++
Sbjct: 234 RILSDMMRMGIHPDVITFSAMI 255
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTYN L + C+ + +M S G+ P++ T+ +L+D +C + +A+
Sbjct: 352 DTFTYNTLYQGYCQAGQFNAAEKVLARM-VSCGVLPDIYTFNMLLDGLCEHGKIEKALVK 410
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ L S YN I+KG
Sbjct: 411 LEDLQKSETVVGIITYNIIIKG 432
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN L+ L + D MR +GI P+++T++ +ID L EA
Sbjct: 211 PDVITYNSLITRLFHSGKWGVSARILSDMMR--MGIHPDVITFSAMIDVFGKEGQLLEAK 268
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + P+ YN+++ G
Sbjct: 269 KQYDEMIQRSVDPNIVTYNSLING 292
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K + V + + LGI +L +++ LID C L A+
Sbjct: 71 PSIVDFSRLLVAIAKLKKYEAVISLFRHIEI-LGISHDLYSFSTLIDCFCRCSRLSLALS 129
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + GF+P + +++ G+
Sbjct: 130 CLGKMMKLGFEPSIVTFGSLVNGF 153
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN ++ LCK V ++M G +PN +TY ILI+N C L EA
Sbjct: 390 IAPDAITYNSVLNGLCKAGKAKEVNETFEEMILK-GCRPNAITYNILIENFCKINQLEEA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +S G PD +NT++ G+
Sbjct: 449 SGVIVRMSQDGLVPDTISFNTLIHGF 474
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ YN LVK LC+ + +++M G P++ TY I+I+ +C N+
Sbjct: 283 KDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVED-GCHPDIWTYNIVINGLCKMGNIS 341
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ G+ PD F +NT++ GY
Sbjct: 342 DAAVVMNDAIVKGYLPDVFTFNTMIDGY 369
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FT N ++ LC+ L V+ M A I P++VTY L+ +C ++EA + +
Sbjct: 151 FTCNIWIRGLCEGGRLEEAVALVESMDAY--IAPDVVTYNTLMRGLCKDSKVQEAAQYLR 208
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ + G PD F YNTI+ GY
Sbjct: 209 RMMNQGCIPDDFTYNTIIDGY 229
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+TYN ++ LCK +++ ++ G P++ T+ +ID C L A++
Sbjct: 322 PDIWTYNIVINGLCKMGNISDAAVVMNDAIVK-GYLPDVFTFNTMIDGYCKRLKLDSALQ 380
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + G PD YN+++ G
Sbjct: 381 LVERMWMYGIAPDAITYNSVLNG 403
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L++ LCK + ++ +M + G P+ TY +ID C L+EA
Sbjct: 180 IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRM-MNQGCIPDDFTYNTIIDGYCKRDMLQEA 238
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ GF PD Y +++ G
Sbjct: 239 TELLKDAIFKGFVPDRVTYCSLING 263
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN ++ CK L + G P+ VTY LI+ +C ++ A+
Sbjct: 217 PDDFTYNTIIDGYCKRDMLQEATELLKDAIFK-GFVPDRVTYCSLINGLCAEGDVERALE 275
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + KPD VYN+++KG
Sbjct: 276 LFNEAQAKDLKPDLVVYNSLVKG 298
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
IFK PD TY L+ LC + ++ +A +KP+LV Y L+ +C
Sbjct: 246 IFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAK-DLKPDLVVYNSLVKGLCRQGL 304
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+++++ + + G PD + YN ++ G
Sbjct: 305 ILHALQVMNEMVEDGCHPDIWTYNIVING 333
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K PD+FT+N ++ CK L + V++M GI P+ +TY +++ +C
Sbjct: 351 IVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWM-YGIAPDAITYNSVLNGLCKAGK 409
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+E + G +P+ YN +++ +
Sbjct: 410 AKEVNETFEEMILKGCRPNAITYNILIENF 439
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P+ TYN L++ CK L + +M G+ P+ +++ LI C
Sbjct: 420 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQD-GLVPDTISFNTLIHGFCRNG 478
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L L + G+ +N ++ Y
Sbjct: 479 DLDGAYLLFQKLDEKGYSATADTFNILIGAY 509
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD ++N L+ C+ L Y ++ G T+ ILI + N++ A
Sbjct: 460 LVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEK-GYSATADTFNILIGAYSSKLNMQMA 518
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + G+KPD + Y ++ G
Sbjct: 519 EKIFGEMISKGYKPDLYTYRVLVDG 543
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD++TY LV CK ++ Y + +M S G P++ T+ +++++
Sbjct: 525 MISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEM-VSKGFVPSMATFGRVLNSLAMNH 583
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+ ++ + G P+ V +TI+
Sbjct: 584 RVSEAVAIIHIMVRMGVVPE--VVDTIL 609
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ ++ +M S G KP+L TY +L+D C N+ A ++
Sbjct: 501 TFNILIGAYSSKLNMQMAEKIFGEM-ISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAE 559
Query: 72 LSDSGFKPDCFVYNTIM 88
+ GF P + ++
Sbjct: 560 MVSKGFVPSMATFGRVL 576
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + YN L+ C + + F +M GI+ NLVTY LID + T L
Sbjct: 523 RGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKK-GIELNLVTYNTLIDGLSMTGKLS 581
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ +S G KPD F YN+++ GY
Sbjct: 582 EAEDLLLEISRKGLKPDVFTYNSLISGY 609
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P + TYN L+ CK + + ++M+A I+P+L+T+ L+ +
Sbjct: 240 MLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD-HIEPSLITFNTLLKGLFKAG 298
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A ++ + D GF PD F ++ + GY
Sbjct: 299 MVEDAENVLKEMKDLGFVPDAFTFSILFDGY 329
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTYN L+ ++ ++M+ S GIKP L TY +LI ++C + +
Sbjct: 593 KGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS-GIKPTLKTYHLLI-SLCTKEGIE 650
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
RL +S KPD VYN ++ Y
Sbjct: 651 LTERLFGEMS---LKPDLLVYNGVLHCY 675
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y L+ CLCK L V + G+ P + Y +LID C+ + +A R
Sbjct: 492 PNVVSYGTLINCLCKGSKLLEA-QIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFR 550
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G + + YNT++ G
Sbjct: 551 FSKEMLKKGIELNLVTYNTLIDG 573
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P + TYN L+ + ++ + +M + G PN+V+Y LI+ +C L
Sbjct: 452 LKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDN-GTMPNVVSYGTLINCLCKGSKL 510
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + D G P +YN ++ G
Sbjct: 511 LEAQIVKRDMEDRGVSPKVRIYNMLIDG 538
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T + L+ LCK + + + A G+ PN V Y +ID C +L A +
Sbjct: 355 YTCSILLNALCKEGKIEKAEEILGREMAK-GLVPNEVIYNTMIDGYCRKGDLVGARMKIE 413
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
A+ G KPD YN +++ +
Sbjct: 414 AMEKQGMKPDHLAYNCLIRRF 434
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ YN ++ C+ L ++ M G+KP+ + Y LI C +
Sbjct: 383 KGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQ-GMKPDHLAYNCLIRRFCELGEME 441
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + V+ + G P YN ++ GY
Sbjct: 442 NAEKEVNKMKLKGVSPSVETYNILIGGY 469
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P F Y ++ K + ++M+ I P++ Y +LID +C K + +A +
Sbjct: 177 PSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDR-IYPSVFIYNVLIDGLCKGKRMNDAEQ 235
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + P YNT++ GY
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGY 259
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + D TYN L+ K L V + +D+M A ++P TY I++ C K
Sbjct: 691 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR-EMEPEADTYNIIVKGHCEVK 749
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + GF D + N ++ G
Sbjct: 750 DYMSAYVWYREMQEKGFLLDVCIGNELVSG 779
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD+ YN ++ C + +N QM S+G+ + TY LI L E
Sbjct: 661 LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGL--DKTTYNSLILGQLKVGKLCE 718
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ +P+ YN I+KG+
Sbjct: 719 VRSLIDEMNAREMEPEADTYNIIVKGH 745
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 8 PDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
PD FT++ L K + VY + G+K N T +IL++ +C + +
Sbjct: 317 PDAFTFSILFDGYSSNEKAEAALGVY----ETAVDSGVKMNAYTCSILLNALCKEGKIEK 372
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ G P+ +YNT++ GY
Sbjct: 373 AEEILGREMAKGLVPNEVIYNTMIDGY 399
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+ N ++ LCK + ++F DQ+ +G+KP++V+YTILID C
Sbjct: 391 MINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQI-IHVGVKPDVVSYTILIDGYCLDG 449
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+++L+ + G +PD Y+ ++ GY
Sbjct: 450 KMDESIKLLGRMVSIGLRPDNVTYSALLNGY 480
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM--RASL-------------GIKPNLVTYT 50
PP+I TYN ++ LCK +++ + QM + L G++P++VTY+
Sbjct: 170 FPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYS 229
Query: 51 ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+LID C EA + ++ G PD + Y T++ GY
Sbjct: 230 LLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGY 270
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK------ 60
PP++ +YN ++ L K + Y +M G PN+VTY +ID +C +
Sbjct: 136 PPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQ-GFPPNIVTYNSVIDGLCKAQAMDKAE 194
Query: 61 ----------NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+RL+ +S G +PD Y+ ++ Y
Sbjct: 195 AVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYY 235
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY ++ LCK + + QM S G+ P+++T+T LI +C +
Sbjct: 324 KGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQM-VSEGLSPDIITFTSLIHGLCTIGEWK 382
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+ +L + + G P+ NTIM
Sbjct: 383 KVEKLSFEMINRGIHPNAIFLNTIM 407
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +P + +N L++ K +L +MR G PN+VTYT +ID +C
Sbjct: 286 MIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQK-GFSPNVVTYTTVIDILCKAG 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ S + G PD + +++ G
Sbjct: 345 RVEDAVSHFSQMVSEGLSPDIITFTSLIHG 374
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y L+ C + + +M S+G++P+ VTY+ L++ C + +A+
Sbjct: 433 PDVVSYTILIDGYCLDGKMDESIKLLGRM-VSIGLRPDNVTYSALLNGYCKNGRVDDALA 491
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + KP+ YN I+ G
Sbjct: 492 LYREMFSKDVKPNAITYNIILHG 514
Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TY+ L+ CK T N D M G P+ TY L+ L +
Sbjct: 221 LQPDVVTYSLLIDYYCKIGRCTEARNIFDSM-VRRGQNPDAYTYRTLLHGYATKGALVDM 279
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G + V+N +++ Y
Sbjct: 280 HDLLALMIQDGIPLEDHVFNILIRAY 305
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN ++ L + F ++ S GI+ + TY I++ +C +
Sbjct: 499 KDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDS-GIQLGINTYNIVLGGLCENSFVD 557
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R+ L F+ + +N ++ G
Sbjct: 558 EALRMFQGLRSKEFQLEVRTFNIMIVG 584
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY+ L+ CK + +M S +KPN +TY I++ + + + A
Sbjct: 466 LRPDNVTYSALLNGYCKNGRVDDALALYREM-FSKDVKPNAITYNIILHGLFHAGRVVAA 524
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ DSG + YN ++ G
Sbjct: 525 REFYMKIVDSGIQLGINTYNIVLGG 549
>gi|224056475|ref|XP_002298874.1| predicted protein [Populus trichocarpa]
gi|222846132|gb|EEE83679.1| predicted protein [Populus trichocarpa]
Length = 948
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ FTYN L+ L K R + ++M L + PN VTY ILID C+ N
Sbjct: 74 RMIAPNEFTYNTLINGLMKERKIGGATRVFNEM-LMLNLSPNRVTYNILIDGHCDCGNFE 132
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+RL+ + G +PD Y ++ G
Sbjct: 133 QALRLLDVMEAKGLRPDEVNYGALLSG 159
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN ++ CK + +D+M S GI+ ++ TY +LID++C +
Sbjct: 8 PTIVTYNTILNWCCKKGRYKAASDLIDRME-SKGIEADVCTYNMLIDDLCKNNRSAKGYL 66
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + P+ F YNT++ G
Sbjct: 67 LLKKMRKRMIAPNEFTYNTLING 89
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++FK PDI T++ L+ CK + + +M + G+ PN V Y LI N C
Sbjct: 210 MMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMFKA-GLAPNYVIYATLIYNSCKK 268
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ EA R + ++ +G D F+ N ++
Sbjct: 269 GDITEAFRNYATMTRTGHDVDYFICNVLI 297
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD Y L+ L K + ++++R S G+ YT +ID +C L
Sbjct: 144 KGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMS-GMVVGYRAYTAMIDGLCKHGLLD 202
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E+++L+ + G PD ++ ++ G+
Sbjct: 203 ESLQLLDMMFKDGASPDIITFSVLINGF 230
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+L P + T+ L+ LCK L+ +M A G+K ++V Y +LI +C
Sbjct: 737 MLQKRLIPTVATFTTLMHMLCKKAKLSEALKLRGKM-ALYGVKLDVVAYNVLISGLCADG 795
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A L + + G P+ Y T++
Sbjct: 796 DALAAFNLYEEMKERGLWPNTTTYCTLI 823
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
Y ++ LCK L +D M G P+++T+++LI+ C ++ A ++
Sbjct: 187 AYTAMIDGLCKHGLLDESLQLLDMMFKD-GASPDIITFSVLINGFCKAGKIKNAKEVICK 245
Query: 72 LSDSGFKPDCFVYNTIM 88
+ +G P+ +Y T++
Sbjct: 246 MFKAGLAPNYVIYATLI 262
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ L + + F ++ A + PN V YT L D + A
Sbjct: 428 PDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDGLFKVGQSNAASY 487
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD N ++ GY
Sbjct: 488 IYEEMEHKGINPDTIAINAVLDGY 511
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T++ ++ ++ D+M LG P+ TY L+ +C NLREA
Sbjct: 321 LAPNSITFDCIINGYGILGDALKAFSMFDEM-IKLGHCPSHFTYGSLLKGLCKGGNLREA 379
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+L+ L D +YNTI+
Sbjct: 380 KKLLYKLHHIPAAVDTNIYNTIL 402
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L+ LC +N ++M+ G+ PN TY LID + + E L
Sbjct: 780 DVVAYNVLISGLCADGDALAAFNLYEEMKER-GLWPNTTTYCTLIDAISTNEGEVEERLL 838
Query: 69 V 69
V
Sbjct: 839 V 839
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F N L+ LC+ + +F+ M +++ + PN +T+ +I+ + +A +
Sbjct: 289 DYFICNVLISSLCRAGRVAEAEDFMRHM-STIDLAPNSITFDCIINGYGILGDALKAFSM 347
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G P F Y +++KG
Sbjct: 348 FDEMIKLGHCPSHFTYGSLLKG 369
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+V+ L +C + +D M I P + T+T L+ +C L EA++L ++
Sbjct: 717 MVRGLAQCGKVEEAMLVLDCMLQKRLI-PTVATFTTLMHMLCKKAKLSEALKLRGKMALY 775
Query: 76 GFKPDCFVYNTIMKG 90
G K D YN ++ G
Sbjct: 776 GVKLDVVAYNVLISG 790
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN ++ LCK V M G PN++TY IL ++ C + + EA
Sbjct: 491 VSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEK-GCVPNIITYNILTESFCKARKVEEA 549
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ + + G PD + T+MKG+
Sbjct: 550 LNLIEEMQNKGLTPDVVNFGTLMKGF 575
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+TYN ++ LCK ++ N V A G P++ T+ LID C L A+
Sbjct: 423 PDIWTYNLVINGLCKIGCVSDADNLVIDAIAK-GHLPDVFTFNTLIDGYCKKLKLDNAIE 481
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V + + G PD YN+I+ G
Sbjct: 482 IVDRMWNHGVSPDVITYNSILNG 504
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++FT N ++ C+ L +D + G+ P+++TY LI +C +
Sbjct: 245 RGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGV--GRGLTPDVITYNTLICGLCKNFKVV 302
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + + G++PD F YN+I+ GY
Sbjct: 303 EAEHYLRKMVNEGYEPDGFTYNSIIDGY 330
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +N L+ LC+ + ++++ G+ PNL T I I C L EA+R
Sbjct: 214 PDIMAFNKLIHTLCRKGHVQESERLLNKV-LKRGVSPNLFTVNIFIQGFCQRAMLNEAIR 272
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G PD YNT++ G
Sbjct: 273 LLDGVG-RGLTPDVITYNTLICG 294
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
FK PD TY L+ LC+ + N ++ G+KPNLV L+ + +
Sbjct: 348 FKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEK-GLKPNLVLCNTLVKGLSQQGLI 406
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++L++ +S++G PD + YN ++ G
Sbjct: 407 LQALKLMNEMSENGCSPDIWTYNLVING 434
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ + L+K C L Y ++ + TY I+I+ N+
Sbjct: 559 KGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMN 618
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + + ++GF PD + Y ++ G+
Sbjct: 619 MAEKLFNKMCENGFSPDSYTYRVMIDGF 646
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+ + L PD+ TYN L+ LCK + +++ +M + G +P+ TY +ID C
Sbjct: 277 VGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKM-VNEGYEPDGFTYNSIIDGYCKLGM 335
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A +++ + GF PD Y +++ G
Sbjct: 336 MQNADQILRDGAFKGFVPDESTYCSLING 364
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ N LVK L + + +++M + G P++ TY ++I+ +C +
Sbjct: 384 KGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSEN-GCSPDIWTYNLVINGLCKIGCVS 442
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A LV G PD F +NT++ GY
Sbjct: 443 DADNLVIDAIAKGHLPDVFTFNTLIDGY 470
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY ++ CK ++ + Y+F+ ++ G+ P+L T+ +++ +C + + EA+
Sbjct: 634 PDSYTYRVMIDGFCKTGNINSGYSFL-LVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVG 692
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + G P+ V NTI +
Sbjct: 693 IIHLMVHKGIVPE--VVNTIFE 712
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +YN ++ L + R + +MR GI P++ T+TI + + C T A R
Sbjct: 109 PSVQSYNAIMNILVEYRYFDQAHKVYMRMRDK-GIVPDVYTFTIRMKSFCRTSRPHAARR 167
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G + Y T++ G+
Sbjct: 168 LLNNMPSQGCESSAVAYCTVIGGF 191
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN LV C+ R + + V++MR G+KP+ VTYT LID C L AM +
Sbjct: 253 DLVAYNALVNGFCRVRDMKAANDIVEEMRKD-GLKPDKVTYTTLIDGCCKEGELDTAMEM 311
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+SD G D Y ++ G
Sbjct: 312 KQEMSDEGVALDDVTYTALISG 333
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+ +N L++ + + L + N D+M G++P +VT+ L+ +C +L A
Sbjct: 110 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRR-GVQPTVVTFNTLMSGMCKASDLNNA 168
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ +G PD + Y ++G
Sbjct: 169 NALRGLMAKAGIAPDVYTYGAFIQG 193
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY ++ LCK + ++M G+ PN V T LID C ++
Sbjct: 180 IAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM-CERGLNPNTVVLTTLIDAHCKEGDVTAG 238
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L ++ G K D YN ++ G+
Sbjct: 239 LELRWEMATRGVKADLVAYNALVNGF 264
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + T+N L+ +CK L N + + A GI P++ TY I +C T
Sbjct: 140 MLRRGVQPTVVTFNTLMSGMCKASDLNNA-NALRGLMAKAGIAPDVYTYGAFIQGLCKTG 198
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++AM + + + G P+ V T++ +
Sbjct: 199 RIQDAMEMFEEMCERGLNPNTVVLTTLIDAH 229
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ CK + T + + +M+ G P +VTY ++++ C+ ++ A
Sbjct: 355 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNK-GKNPGIVTYNVVMNGFCSLGQMKNA 413
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A+ + G P+ YN ++ G+
Sbjct: 414 DMLLNAMLNIGVCPNDITYNILLDGH 439
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ L+ CK +T +M A+ G+K +LV Y L++ C ++++
Sbjct: 213 RGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM-ATRGVKADLVAYNALVNGFCRVRDMK 271
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +V + G KPD Y T++ G
Sbjct: 272 AANDIVEEMRKDGLKPDKVTYTTLIDG 298
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 9 DIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D TY L+ L K RS+ + M A G++P+ TYT++ID C +++ +
Sbjct: 323 DDVTYTALISGLSKAGRSVDAERILCEMMEA--GLQPDNTTYTMVIDAFCKNGDVKTGFK 380
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P YN +M G+
Sbjct: 381 HLKEMQNKGKNPGIVTYNVVMNGF 404
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ CK L T +M + G+ + VTYT LI + +A
Sbjct: 285 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEM-SDEGVALDDVTYTALISGLSKAGRSVDA 343
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++ + ++G +PD Y ++ +
Sbjct: 344 ERILCEMMEAGLQPDNTTYTMVIDAF 369
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN ++ C + ++ M ++G+ PN +TY IL+D C +R+
Sbjct: 392 PGIVTYNVVMNGFCSLGQMKNADMLLNAM-LNIGVCPNDITYNILLDGHCKHGKVRDTEE 450
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L SA G D VY +++ +
Sbjct: 451 LKSA---KGMVSDFGVYTSLINEF 471
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TY LV L + +T + ++ M+ S G PN+ YTI+I+ +C + EA
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDITGSFRILELMKLS-GCLPNVYPYTIIINGLCQFGRVEEA 635
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+SA+ DSG P+ Y ++KGY
Sbjct: 636 EKLLSAMQDSGVSPNHVTYTVMVKGY 661
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P TY L+K LC + +N D+M G KPN+ TYT+LID +C +
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM-IPRGCKPNVHTYTVLIDGLCRDGKIE 353
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + P YN ++ GY
Sbjct: 354 EANGVCRKMVKDRIFPSVITYNALINGY 381
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++ Y ++ LC+ + + M+ S G+ PN VTYT+++ N L A+
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDS-GVSPNHVTYTVMVKGYVNNGKLDRALE 672
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V A+ + G++ + +Y+++++G+
Sbjct: 673 TVRAMVERGYELNDRIYSSLLQGF 696
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ LC+ + + +M + G+ P++V+Y +LID +C ++ A +
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN-GLSPDIVSYNVLIDGLCREGHMNTAYK 462
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S+++ +PDC + I+ +
Sbjct: 463 LLSSMNCFDIEPDCLTFTAIINAF 486
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+ +Y+ L+ LC+ L + DQM G +P+ TYT+LI +C+ + +A
Sbjct: 263 APNSVSYSILIHGLCEVGRLEEAFGLKDQM-GEKGCQPSTRTYTVLIKALCDRGLIDKAF 321
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G KP+ Y ++ G
Sbjct: 322 NLFDEMIPRGCKPNVHTYTVLIDG 345
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ CK + + + M KPN+ T+ L++ +C +A+
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKR-ACKPNVRTFNELMEGLCRVGKPYKAVH 427
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D+G PD YN ++ G
Sbjct: 428 LLKRMLDNGLSPDIVSYNVLIDG 450
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI +YN L+ LC+ + T Y + M I+P+ +T+T +I+ C A
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNC-FDIEPDCLTFTAIINAFCKQGKADVA 495
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G D T++ G
Sbjct: 496 SAFLGLMLRKGISLDEVTGTTLIDG 520
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 21 CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80
C+ +L D M + PN V+Y+ILI +C L EA L + + G +P
Sbjct: 241 CRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPS 300
Query: 81 CFVYNTIMKG 90
Y ++K
Sbjct: 301 TRTYTVLIKA 310
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LC+ + +M I P+++TY LI+ C
Sbjct: 327 MIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDR-IFPSVITYNALINGYCKDG 385
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L++ + KP+ +N +M+G
Sbjct: 386 RVVPAFELLTVMEKRACKPNVRTFNELMEG 415
>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 566
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI K L P+ +TY+FL++ K R +D++ A G +PNLV+Y +L+ +C
Sbjct: 193 LIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAK-GGEPNLVSYNVLLTGLCKEG 251
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+A+RL L GF P+ YN +++
Sbjct: 252 RTEDAIRLFRELPSKGFSPNVVSYNILLR 280
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+F L+ LCK + ++ M S GI P+ +YT L+ ++C
Sbjct: 88 MVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGS-GIIPDASSYTFLVSSLCRKG 146
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ AM+LV + + G+ + YN++++G
Sbjct: 147 NVGYAMQLVDKMEEYGYPTNTVTYNSLVRG 176
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TYN LV+ LC +LT +D++ G+ PN TY+ L++ + EA
Sbjct: 164 PTNTVTYNSLVRGLCMHGNLTQSLQLLDRL-IQKGLVPNAYTYSFLLEAAYKERGADEAS 222
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + G +P+ YN ++ G
Sbjct: 223 KLLDEIIAKGGEPNLVSYNVLLTG 246
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ +YN L+ LCK ++ S G PN+V+Y IL+ ++CN
Sbjct: 228 IIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFREL-PSKGFSPNVVSYNILLRSLCNEG 286
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
EA L++ ++ P YN ++
Sbjct: 287 RWEEANVLLAEMNGDERSPSTVTYNILI 314
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT---YTILIDNVC 57
++++ P+ TYN + LC+ + ++ + SLG K + T Y I+I ++C
Sbjct: 368 MMYRHCNPNEGTYN-AIATLCEEGMVQEAFSIIQ----SLGNKQHSSTQEFYKIVITSLC 422
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A +L+ ++ GF PD F Y+++++G
Sbjct: 423 RKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRG 455
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F++LP P++ +YN L++ LC + +M P+ VTY ILI ++
Sbjct: 259 LFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGD-ERSPSTVTYNILIGSL 317
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
A+ ++ + + FKP YN I+
Sbjct: 318 ALHGRTEHALEVLEEMIRARFKPTASSYNPII 349
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ CK R + + M G PN TYTIL++ + + K + A +
Sbjct: 478 PDTENYNSLILGCCKSRRTDLALDVFEIMVGK-GYLPNETTYTILVEGIIHEKEMDLATK 536
Query: 68 LVSALS 73
++ L
Sbjct: 537 VLRELQ 542
>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 401
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN +V C F+ +MR+ G++P++VTY L+D +C EA +
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 207
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KPD Y T+++GY
Sbjct: 208 IFDSMTKRGLKPDITTYGTLLQGY 231
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y+ ++ K L +DQ I PN+VTY +I +C + + +AM
Sbjct: 85 PPDVVSYSTVINGFFKEGDLD---KMLDQR-----ISPNVVTYNSIIAALCKAQTVDKAM 136
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + SG PDC YN+I+ G+
Sbjct: 137 EVLTTMVKSGVMPDCMTYNSIVHGF 161
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TYN ++ LCK +++ + M S G+ P+ +TY ++ C++
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-GVMPDCMTYNSIVHGFCSSG 165
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 166 QPKEAIVFLKKMRSDGVEPDVVTYNSLM 193
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + ++ LV K + +MR G+ PN VTY +ID +C +
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ-GLNPNAVTYGTVIDVLCKSG 305
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +AM + D G +PD VYN+++
Sbjct: 306 RVEDAMLYFEQMIDEGLRPDSIVYNSLIH 334
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ +L ++ +D M + GI PN ++IL+ + +
Sbjct: 215 RGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVE 273
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM + S + G P+ Y T++
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVI 298
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ LCK T D M G+KP++ TY L+ L E
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSM-TKRGLKPDITTYGTLLQGYATKGALVEM 240
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 241 HGLLDLMVRNGIHPNHYVFSILVCAY 266
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFK--PDCFVYNTIMKGY 91
P++ +Y IL++ +C+ +EA+ L+ ++D G PD Y+T++ G+
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGF 98
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY ++ LCK + + +QM G++P+ + Y LI ++C
Sbjct: 285 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-IDEGLRPDSIVYNSLIHSLCIFDKWE 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + D G +N+I+ +
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSIIDSH 371
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ C F+ +MR+ G++P++VTY++L+D +C EA +
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGY 346
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C + + M S+G+KPN VTY+ LI+ C + +A+
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGM-VSVGLKPNTVTYSTLINGYCKISRMEDALV 567
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD YN I++G
Sbjct: 568 LFKEMESSGVSPDIITYNIILQG 590
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K Y+ +M GI P++VTY +I +C + + +AM
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRGILPDVVTYNSIIAALCKAQAMDKAM 251
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + +G PDC YN+I+ GY
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGY 276
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 35 QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +G+KPN++TY LI+ C + EAM+L+S + G KP+ Y+T++ GY
Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGY 556
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK +++ ++ M + G+ P+ +TY ++ C++ +EA+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIG 287
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +PD Y+ +M
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLM 308
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + L+K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 113 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDEN 172
Query: 61 NLREAMRLVSALSDS---GFKPDCFVYNTIMKGY 91
+EA+ L+ ++D G PD Y T++ G+
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESS-GVSPDIITYNIILQGLFQTRRTAAA 600
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 601 KELYVRITESGTQIELSTYNIILHG 625
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P YN L+ LC C + +M GI N + + +ID+ C
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM-LDRGICLNTIFFNSIIDSHCKEG 490
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KP+ YNT++ GY
Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLINGY 521
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + ++ L+ K + +MR G+ PN VTY +I +C + + +AM
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAML 427
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ D G P VYN+++ G
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHG 450
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ LCK D M G+KP + TY L+ L E
Sbjct: 299 PDVVTYSLLMDYLCKNGRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHG 357
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD +V++ ++ Y
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAY 381
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+ TY L+ C C+ L + + + G + + + +T L+ +C K +
Sbjct: 82 EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKK-GFRVDAIAFTPLLKGLCADKRTSD 140
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ G P+ F YN ++KG
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKG 167
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY ++ LCK + + +QM G+ P + Y LI +C A
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWERA 460
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G + +N+I+ +
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSH 486
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI P+ ++ILI +
Sbjct: 330 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPDHYVFSILICAYAKQGKVD 388
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G P+ Y ++
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVI 413
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ C F+ +MR+ G++P++VTY++L+D +C EA +
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGY 346
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C + + M S+G+KPN VTY+ LI+ C + +A+
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGM-VSVGLKPNTVTYSTLINGYCKISRMEDALV 567
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD YN I++G
Sbjct: 568 LFKEMESSGVSPDIITYNIILQG 590
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K Y+ +M GI P++VTY +I +C + + +AM
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRGILPDVVTYNSIIAALCKAQAMDKAM 251
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + +G PDC YN+I+ GY
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGY 276
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 35 QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +G+KPN++TY LI+ C + EAM+L+S + G KP+ Y+T++ GY
Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGY 556
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK +++ ++ M + G+ P+ +TY ++ C++ +EA+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIG 287
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +PD Y+ +M
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLM 308
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + L+K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 113 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDEN 172
Query: 61 NLREAMRLVSALSDS---GFKPDCFVYNTIMKGY 91
+EA+ L+ ++D G PD Y T++ G+
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESS-GVSPDIITYNIILQGLFQTRRTAAA 600
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 601 KELYVRITESGTQIELSTYNIILHG 625
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P YN L+ LC C + +M GI N + + +ID+ C
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM-LDRGICLNTIFFNSIIDSHCKEG 490
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KP+ YNT++ GY
Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLINGY 521
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ LCK D M G+KP + TY L+ L E
Sbjct: 299 PDVVTYSLLMDYLCKNGRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHG 357
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD +V++ ++ Y
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAY 381
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+ TY L+ C C+ L + + + G + + + +T L+ +C K +
Sbjct: 82 EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKK-GFRVDAIAFTPLLKGLCADKRTSD 140
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ G P+ F YN ++KG
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKG 167
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + ++ L+ + +MR G+ PN VTY +I +C + + +AM
Sbjct: 369 PDHYVFSILICAYANQGKVDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAML 427
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ D G P VYN+++ G
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHG 450
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI P+ ++ILI N +
Sbjct: 330 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPDHYVFSILICAYANQGKVD 388
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G P+ Y ++
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVI 413
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY ++ LCK + + +QM G+ P + Y LI +C A
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWERA 460
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G + +N+I+ +
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSH 486
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TYN ++ C+ + + + +M+ I+P +VTYT LI + +
Sbjct: 179 REISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGK-NIEPTVVTYTTLIKGYVSVDQVD 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+RLV + G KP+ Y+T++ G
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLLPG 264
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + TY L+K + V++M+ GIKPN +TY+ L+ +CN + +
Sbjct: 214 KNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKG-YGIKPNAITYSTLLPGLCNAEKMS 272
Query: 64 EAMRLVSALSDSGFKP 79
EA ++ + D P
Sbjct: 273 EARSILKEMVDKYIAP 288
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P T+N ++ + T F + M+ S I P+++TY +I+ C K
Sbjct: 141 MLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK-SREISPDVITYNTMINGYCRVK 199
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + +P Y T++KGY
Sbjct: 200 KMEEAEKYFVEMKGKNIEPTVVTYTTLIKGY 230
>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 678
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI L ++F+YN ++ C C+ + + M+ G+ PNLVT+ LI+ C
Sbjct: 420 LISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVR-GVVPNLVTFNTLINGHCKDG 478
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A +L+ +L ++G KPD F +++I+ G
Sbjct: 479 AIDKARKLLESLLENGLKPDIFTFSSIVDG 508
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L PDIFT++ +V LC+ + +M GI PN V Y ILI ++C
Sbjct: 490 LLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEM-IEWGINPNAVIYNILIRSLCTIG 548
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++ +++L+ + G PD + YN +++
Sbjct: 549 DVARSVKLLRRMQKEGISPDTYSYNALIQ 577
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD ++YN L++ C+ + D M S G+ P+ TY+ I+ + + L
Sbjct: 563 EGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRS-GLNPDNYTYSAFIEALSESGRLE 621
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA ++ ++ +G PD ++ N I+K
Sbjct: 622 EAKKMFYSMEANGCSPDSYICNLIIK 647
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F L P YN L+ L K S+ Y QM A + TY LI VC +
Sbjct: 172 FLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRF-TYNTLIHGVCKVGVV 230
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+RLV + D G P+ F Y +++G+
Sbjct: 231 DEALRLVRQMKDKGHFPNVFTYTMLIEGF 259
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTYN L+ +CK + V QM+ G PN+ TYT+LI+ C + EA +
Sbjct: 213 DRFTYNTLIHGVCKVGVVDEALRLVRQMKDK-GHFPNVFTYTMLIEGFCIASRVDEAFGV 271
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ DSG P+ ++ G
Sbjct: 272 FETMKDSGVYPNEATVRALVHG 293
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L++ LC + + +M+ GI P+ +Y LI C + +A +
Sbjct: 532 PNAVIYNILIRSLCTIGDVARSVKLLRRMQKE-GISPDTYSYNALIQIFCRMNKVEKAKK 590
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++S SG PD + Y+ ++
Sbjct: 591 LFDSMSRSGLNPDNYTYSAFIEA 613
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN L+ CK + D+M GIKP++VTY LI C +REAMR
Sbjct: 233 PDLFTYNTLISLYCKKGMHYEALSVQDRMERE-GIKPDIVTYNSLIHGFCKEGRMREAMR 291
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + D+ P+ Y T++ GY
Sbjct: 292 LFKEIRDA--TPNHVTYTTLIDGY 313
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TYN L+ CK + ++R + PN VTYT LID C +L +A
Sbjct: 266 IKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA---TPNHVTYTTLIDGYCRLNDLDQA 322
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+RL + G P YN+I++
Sbjct: 323 LRLREEMEAQGLYPTVVTYNSILR 346
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 2 IFKQL---PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
+FK++ P+ TY L+ C+ L ++M A G+ P +VTY ++ +C
Sbjct: 292 LFKEIRDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQ-GLYPTVVTYNSILRKLCE 350
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+A +L++ +S+ +PD NT++ Y
Sbjct: 351 IGRIRDANKLLNEMSEKKIEPDNVTCNTLINAY 383
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD T N L+ CK + + ++M G+K + TY LI C + +
Sbjct: 367 KKIEPDNVTCNTLINAYCKIGDMKSALKVKNRM-VEAGLKLDQFTYKALIHGFCKIREMD 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ ++ D+GF P Y+ ++ GY
Sbjct: 426 GAKELLLSMLDAGFSPSYCTYSWLVDGY 453
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + L+ L K R V+ +M A +G++ N+ Y +LI C + ++ +A
Sbjct: 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKM-ARIGVEANIHVYNVLIHACCKSGDVEKADN 221
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + PD F YNT++ Y
Sbjct: 222 LLSEMESKCVFPDLFTYNTLISLY 245
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTY L+ CK R + + M + G P+ TY+ L+D CN +N ++L
Sbjct: 407 DQFTYKALIHGFCKIREMDGAKELLLSMLDA-GFSPSYCTYSWLVDGYCNQQNEEAVLKL 465
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
G D +Y +++ +
Sbjct: 466 PDEFVRKGLCVDKSLYRALIRRF 488
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TYN L+ LC+ + + +++M S + ++VTY ILID++C
Sbjct: 359 MIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEM-VSKKLSADVVTYNILIDSLCKKG 417
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
R+A++L+ + + G P YNT+M GY
Sbjct: 418 ESRKAVKLLDEMFEKGLNPSHVTYNTLMDGY 448
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYN---FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ P++ TYN L+ CK + +Y + +M A GI PN VTY ILID C +N+
Sbjct: 186 VSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAK-GICPNEVTYNILIDGFCKDENV 244
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
AMR+ + G +P+ YN ++ G
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILING 272
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ TYN L+ LC + DQM +S ++PN+VT+ +LI+ C K +
Sbjct: 257 QGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSS-DLEPNVVTHNVLINGFCKNKTVN 315
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + + G P+ Y T++ Y
Sbjct: 316 EAINLFNDMEKQGVDPNAMTYTTLIDAY 343
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+L D+ TYN L+ LCK +D+M G+ P+ VTY L+D C
Sbjct: 394 MVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEK-GLNPSHVTYNTLMDGYCREG 452
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLR A+ + + + G + + +N ++KG+
Sbjct: 453 NLRAALIVRTRMERKGKQANVVTHNVLIKGF 483
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P++ T+N L+ CK +++ N + M G+ PN +TYT LID C
Sbjct: 289 MVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQ-GVDPNAMTYTTLIDAYCKDG 347
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L + + D G P+ YN ++ G
Sbjct: 348 RMEDAFALYNMMIDRGIFPEVSTYNCLIAG 377
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TYN L+ CK +++ +M+ G++PN+VTY ILI+ +C+
Sbjct: 219 MVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQ-GLRPNVVTYNILINGLCSDG 277
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+ L + S +P+ +N ++ G+
Sbjct: 278 KVDEAVALRDQMVSSDLEPNVVTHNVLINGF 308
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I+ N++++ I+++ +C L A ++ + G P+ YNT++ GY
Sbjct: 151 IELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGY 200
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I YN L+ LCK ++ N + + A G+ PN VTYT LID C ++
Sbjct: 671 KGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGDIS 729
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + +G PD FVY+ + G
Sbjct: 730 NAFYLYNEMLATGITPDAFVYSVLTTG 756
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L+ KQ+ PD TYN +++ + S + + +M + GI PN+ TY+I+I
Sbjct: 383 LLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA-GISPNVYTYSIMIHG 441
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C + +A L+ ++ G KP+ FVY ++ GY
Sbjct: 442 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 477
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ L+ LCK + +D+M + G+ PN+V Y LID +C + ++ A
Sbjct: 640 PDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVDPNIVCYNALIDGLCKSGDISYARN 698
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +++ G P+C Y +++ G
Sbjct: 699 VFNSILAKGLVPNCVTYTSLIDG 721
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ LCK R +D+M + +KPN+V Y LID N EA
Sbjct: 288 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCA-ELKPNVVVYANLIDGFMREGNADEA 346
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + +G +P+ Y+ +++G
Sbjct: 347 FKMIKEMVAAGVQPNKITYDNLVRG 371
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LC+ ++ + F M G+ P+ TY LI+ +C ++ EA L+
Sbjct: 259 TYNVLIAGLCRSGAVEEAFGFKKDME-DYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 317
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+S + KP+ VY ++ G+
Sbjct: 318 MSCAELKPNVVVYANLIDGF 337
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+++TY+ ++ LC+ + +++M + G+KPN Y LI C N+ A
Sbjct: 428 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEM-TTKGLKPNAFVYAPLISGYCREGNVSLA 486
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ PD + YN+++ G
Sbjct: 487 CEIFDKMTKVNVLPDLYCYNSLIFG 511
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++ YN L+ L K + + QM+ G+ PN TY+ LI +L A +
Sbjct: 500 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQER-GLLPNEFTYSGLIHGYLKNGDLESAEQ 558
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV + D+G KP+ +Y +++ Y
Sbjct: 559 LVQRMLDTGLKPNDVIYIDLLESY 582
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P++ Y L+ + + + + +M A+ G++PN +TY L+ +C +
Sbjct: 322 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA-GVQPNKITYDNLVRGLCKMGQMDR 380
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + +PD YN I++G+
Sbjct: 381 ASLLLKQMVRDSHRPDTITYNLIIEGH 407
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 17 VKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76
++ CK R T + +MR G N VTY +LI +C + + EA + D G
Sbjct: 229 LEAYCKVREFDTAKKVLVEMRER-GCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG 287
Query: 77 FKPDCFVYNTIMKG 90
PD F Y ++ G
Sbjct: 288 LVPDGFTYGALING 301
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ F Y L+ C+ +++ D+M + + P+L Y LI + +
Sbjct: 461 KGLKPNAFVYAPLISGYCREGNVSLACEIFDKM-TKVNVLPDLYCYNSLIFGLSKVGRVE 519
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E+ + + + + G P+ F Y+ ++ GY
Sbjct: 520 ESTKYFAQMQERGLLPNEFTYSGLIHGY 547
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 36/122 (29%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT------------- 50
+ L P+ FTY+ L+ K L + V +M + G+KPN V Y
Sbjct: 531 RGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDT-GLKPNDVIYIDLLESYFKSDDIE 589
Query: 51 ----------------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
ILI N+ ++ N+ A R++S + +G PD VY++++
Sbjct: 590 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI 649
Query: 89 KG 90
G
Sbjct: 650 SG 651
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ TY L+ CK ++ + ++M A+ GI P+ Y++L +
Sbjct: 703 ILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAG 761
Query: 61 NLREAMRLVSAL 72
+L +AM L+ +
Sbjct: 762 DLEQAMFLIEEM 773
>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Cucumis
sativus]
Length = 830
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P + TY L+ C+ ++ +++F+ +M A+ + P VTYT+LI +C +
Sbjct: 579 LKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEAN-AVVPTHVTYTVLIKGLCRQNKM 637
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMK 89
E+++L+ + G PD YNTI++
Sbjct: 638 HESLQLLEYMYAKGLLPDSVTYNTIIQ 664
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L K ++ V +M G+ P+LVTYT LI C N+ EA
Sbjct: 337 VEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQ-GLNPDLVTYTTLICGHCQMGNIEEA 395
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L GFK + YN ++
Sbjct: 396 LKLRQETLSRGFKLNVIFYNMLL 418
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TYN +++C CK + +T + M P VTY +LI+ +C +L+
Sbjct: 650 KGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLH-NCDPTQVTYKVLINALCIFGDLK 708
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ R+V ++ D Y TI+K +
Sbjct: 709 DVDRMVVSIEDRNITLKKXTYMTIIKAH 736
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D F+YN L+ LC S+ F D M G++P++VTY L + A
Sbjct: 302 LLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKH-GVEPDVVTYNTLAKGFLLLGLMSGA 360
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++V + G PD Y T++ G+
Sbjct: 361 RKVVQKMLLQGLNPDLVTYTTLICGH 386
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P + T+N L+ C+ L ++ +R G+ P++VTYT L++ C
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLK-GLVPSVVTYTTLMNAYCEVG 600
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++E + + + P Y ++KG
Sbjct: 601 NMQEMFHFLHEMEANAVVPTHVTYTVLIKG 630
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D+ YN ++ + + +M GI P++VT+ LI+ C +L EA
Sbjct: 512 LMEDVVLYNIMIDGYVRLDGIAEAMQLYYKM-IERGITPSVVTFNTLINGFCRRGDLMEA 570
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G P Y T+M Y
Sbjct: 571 RKMLEVIRLKGLVPSVVTYTTLMNAY 596
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ TY L+ C+ ++ + Q S G K N++ Y +L+ +C
Sbjct: 367 MLLQGLNPDLVTYTTLICGHCQMGNIEEALK-LRQETLSRGFKLNVIFYNMLLSCLCKVG 425
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ L + +PD VY+ ++ G
Sbjct: 426 RIEEALTLFDEMETLRLEPDFIVYSILIHG 455
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 34/121 (28%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR--------------------------- 37
+L PD Y+ L+ LCK + Y +QMR
Sbjct: 441 RLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEA 500
Query: 38 -------ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + ++V Y I+ID + EAM+L + + G P +NT++ G
Sbjct: 501 RNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLING 560
Query: 91 Y 91
+
Sbjct: 561 F 561
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL------GIKPNLVTYTILIDNVC 57
K + P I + N ++ CK +D R+ G+ + +Y IL+ +C
Sbjct: 265 KVVGPSIVSINTIMSKFCKV-------GLIDVARSXFCLMVKNGLLHDSFSYNILLHGLC 317
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ EA+ + G +PD YNT+ KG+
Sbjct: 318 VAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGF 351
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TY L+ LCK L ++ + +M GIKP +VTY +L++ C + +
Sbjct: 532 LKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDK-GIKPTIVTYNVLMNGFCMSGRVEGG 590
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+ + + P+ YN++MK Y
Sbjct: 591 KKLLDWMLEKNIHPNAATYNSLMKQY 616
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + TYN L+ LCK L + M + +KP++ TYT LID +C + +L
Sbjct: 495 KGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTAC-LKPDVYTYTTLIDALCKSGDLD 553
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + D G KP YN +M G+
Sbjct: 554 RAHSLLQEMLDKGIKPTIVTYNVLMNGF 581
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F++LP ++ +YN L+K LC + D+M ++ P++VTY ILI C
Sbjct: 250 LFQELPHKNVCSYNILLKALCDAGRVKDARQLFDEMASA----PDVVTYGILIHGHCALG 305
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A++L+ + G +P+ VY +++
Sbjct: 306 ELENAVKLLDEMVAGGVEPNATVYTSVV 333
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L D TY L+ CK + + + M G+ PN+VTYT L D +C +++
Sbjct: 425 RRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAM-VQRGVTPNVVTYTALTDGLCKQGDVQ 483
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ +S+ G + + YN+++ G
Sbjct: 484 AANELLHEMSNKGLELNACTYNSLING 510
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ TY L LCK + + +M ++ G++ N TY LI+ +C
Sbjct: 457 MVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEM-SNKGLELNACTYNSLINGLCKAG 515
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +AMR ++ + + KPD + Y T++
Sbjct: 516 YLEQAMRTMADMDTACLKPDVYTYTTLI 543
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ C L +D+M A G++PN YT ++ +C+ + +A+R
Sbjct: 289 PDVVTYGILIHGHCALGELENAVKLLDEMVAG-GVEPNATVYTSVVALLCDKGWISDALR 347
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + D +Y T++ G+
Sbjct: 348 VVEDMVQRKVILDEALYTTVLSGF 371
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TYN L+K C ++ + MR S + PN TY ILI C +
Sbjct: 597 MLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMR-SRDVGPNENTYNILIKGHCKAR 655
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N++EA+ + GF+ Y+ +++
Sbjct: 656 NMKEALYFHDEMIQKGFRLTATSYSALIR 684
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P I TYN L+ C + +D M I PN TY L+ C
Sbjct: 562 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEK-NIHPNAATYNSLMKQYCIEN 620
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++ + + P+ YN ++KG+
Sbjct: 621 NMKSTTEIYKGMRSRDVGPNENTYNILIKGH 651
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC L +D+ + P+++TYTILI+ CN + +A
Sbjct: 204 VAPDVVTYNTILRSLCDSGKLKEAMEVLDR-QLQRECYPDVITYTILIEATCNDSGVGQA 262
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M+L+ + G KPD YN ++ G
Sbjct: 263 MKLLDEMRKKGCKPDVVTYNVLING 287
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ C + +D+MR G KP++VTY +LI+ +C L EA++
Sbjct: 241 PDVITYTILIEATCNDSGVGQAMKLLDEMRKK-GCKPDVVTYNVLINGICKEGRLDEAIK 299
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + G KP+ +N I++
Sbjct: 300 FLNNMPSYGCKPNVITHNIILR 321
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + ++Q+ +S G P L+TY +ID + A+
Sbjct: 416 PDIVTYNTLLTALCKDGKVDAAVEILNQL-SSKGCSPVLITYNTVIDGLTKVGKTEYAVE 474
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G KPD Y+T+++G
Sbjct: 475 LLEEMRRKGLKPDIITYSTLLRG 497
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TYN L+ +CK L F++ M S G KPN++T+ I++ ++C+T
Sbjct: 272 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PSYGCKPNVITHNIILRSMCSTGRWM 330
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A RL+S + G P +N ++
Sbjct: 331 DAERLLSDMLRKGCSPSVVTFNILI 355
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K P + TYN ++ L K +++MR G+KP+++TY+ L+ +
Sbjct: 444 LSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRK-GLKPDIITYSTLLRGLGREG 502
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+++ + KP YN IM G
Sbjct: 503 KVDEAIKIFHDMEGLSIKPSAVTYNAIMLG 532
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ CK + +++M + P++VTY ++ ++C++ L+EAM
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERM----SVAPDVVTYNTILRSLCDSGKLKEAME 229
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ PD Y +++
Sbjct: 230 VLDRQLQRECYPDVITYTILIEA 252
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + T+N L+ LC+ R L + +++M G PN ++Y L+ C K
Sbjct: 339 MLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKM-PKHGCVPNSLSYNPLLHGFCQEK 397
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YNT++
Sbjct: 398 KMDRAIEYLEIMVSRGCYPDIVTYNTLL 425
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+ +++P P+ +YN L+ C+ + + +++ M S G P++VTY L+ +
Sbjct: 370 VLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM-VSRGCYPDIVTYNTLLTAL 428
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A+ +++ LS G P YNT++ G
Sbjct: 429 CKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDG 462
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDI TY+ L++ L + + M L IKP+ VTY ++ +C +
Sbjct: 482 KGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEG-LSIKPSAVTYNAIMLGLCKAQQTS 540
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + + G KP Y +++G
Sbjct: 541 RAIDFLAYMVEKGCKPTEATYTILIEG 567
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ T+N +++ +C R + D +R G P++VT+ ILI+ +C + L A+
Sbjct: 311 PNVITHNIILRSMCSTGRWMDAERLLSDMLRK--GCSPSVVTFNILINFLCRKRLLGRAI 368
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P+ YN ++ G+
Sbjct: 369 DVLEKMPKHGCVPNSLSYNPLLHGF 393
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I++ PD+ L++ C+ ++ + S G P+++TY +LI C +
Sbjct: 132 MIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENS-GAVPDVITYNVLIGGYCKSG 190
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +A+ ++ +S PD YNTI++
Sbjct: 191 EIDKALEVLERMS---VAPDVVTYNTILR 216
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
F N ++ L + L F+++M G P+++ T LI C + ++A R++
Sbjct: 107 FASNIHLRKLVRNGELEEGLKFLERM-IYQGDIPDVIACTSLIRGFCRSGKTKKATRIME 165
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
L +SG PD YN ++ GY
Sbjct: 166 ILENSGAVPDVITYNVLIGGY 186
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
+ P TYN ++ LCK + + +F+ M G KP TYTILI+ + +
Sbjct: 519 IKPSAVTYNAIMLGLCKAQQTSRAIDFLAYM-VEKGCKPTEATYTILIEGIAD 570
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ FTY LV C LT F+++M S G++PN+VTY+ +D +C
Sbjct: 259 MVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKM-CSNGVEPNVVTYSSFMDYLCKNG 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ ++ G KPD Y++++ GY
Sbjct: 318 RCTEARKIFYSMVKRGLKPDITTYSSLLHGY 348
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TY+ ++ LCK +++ D+M + G+ PN TYT L+ C++
Sbjct: 224 MLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKN-GVTPNCFTYTSLVHGFCSSG 282
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA++ + + +G +P+ Y++ M
Sbjct: 283 QLTEAIKFLEKMCSNGVEPNVVTYSSFM 310
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PDI TY+ L+ +L ++ D M S ++P+ + LI
Sbjct: 329 MVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQS-DMQPDHYVFNTLIYASAKQG 387
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EAM + S + G KP+C YNT++ GY
Sbjct: 388 KVDEAMLVFSKMRHQGLKPNCVTYNTLINGY 418
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD + +N L+ K + +MR G+KPN VTY LI+ C
Sbjct: 364 MVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQ-GLKPNCVTYNTLINGYCKIT 422
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ L + +G P+ YN +++G
Sbjct: 423 RMENALALFQEMVSNGVSPNFITYNIMLQG 452
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P IF N L+K LC + + V + LG PN+ ++TI++ +C+ +E
Sbjct: 122 RVEPIIF--NPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQE 179
Query: 65 AMRLVSALSDSGFK--PDCFVYNTIMKG 90
A+ L+ ++D G P+ Y+T+ G
Sbjct: 180 ALELLHMMADDGGGCLPNVVSYSTVTDG 207
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y+ + L K Y +M I PN+VTY+ +I +C + + +AM
Sbjct: 196 PNVVSYSTVTDGLLKGGDPDKAYATYREMLDRR-ILPNVVTYSSIIAALCKGQAMDKAME 254
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G P+CF Y +++ G+
Sbjct: 255 VHDRMVKNGVTPNCFTYTSLVHGF 278
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L P+ TYN L+ CK + +M S G+ PN +TY I++ + T
Sbjct: 401 HQGLKPNCVTYNTLINGYCKITRMENALALFQEM-VSNGVSPNFITYNIMLQGLFRTGRT 459
Query: 63 REAMRLVSALSDSGFK 78
A + SG K
Sbjct: 460 GTAKEFYVQIIKSGKK 475
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ C C L + + + G + + + L+ +C K +AM
Sbjct: 88 PTVHTYGILIGCCCSAGRLDLGFAALGHV-VKKGFRVEPIIFNPLLKGLCADKRTDDAMD 146
Query: 68 LV-SALSDSGFKPDCFVYNTIMKG 90
+V +++ G P+ F + I+KG
Sbjct: 147 IVLRGMTELGCVPNVFSHTIILKG 170
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN LV LCK + + ++ M G+ P+++TY++L+D C + EA+
Sbjct: 256 PNVVTYNALVNGLCKADKMERAHAMIESM-VDKGVTPDVITYSVLVDAFCKASRVDEALE 314
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ G P+ +N+I+ G
Sbjct: 315 LLHGMASRGCTPNVVTFNSIIDG 337
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP++ TYN LV LCK + F+++M +S G P +TY L+ +C +A
Sbjct: 429 VPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSS-GCVPESMTYGSLVYALCRASRTDDA 487
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++LVS L G+ PD YN ++ G
Sbjct: 488 LQLVSKLKSFGWDPDTVTYNILVDG 512
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ T+ L+ LCK + + +D M +LG+ PN+VTY +L+ +C +
Sbjct: 389 MVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM-GNLGVPPNVVTYNVLVHGLCKSG 447
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ E + + SG P+ Y +++
Sbjct: 448 RIEEPCEFLEEMVSSGCVPESMTYGSLV 475
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN ++ LCK L +++ G P++VTY LID++C +L EA R
Sbjct: 79 PTIVTYNTIINGLCKSNELGAGMELFEEL-VKRGHHPDVVTYNTLIDSLCKAGDLEEARR 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +S G P+ Y+ ++ G
Sbjct: 138 LHGGMSSRGCVPNVVTYSVLING 160
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD T++ L+ LCKC N D M A G PN+VTY L++ +C +
Sbjct: 220 RVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAG-GYVPNVVTYNALVNGLCKADKMER 276
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ ++ D G PD Y+ ++ +
Sbjct: 277 AHAMIESMVDKGVTPDVITYSVLVDAF 303
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK L M +S G PN+VTY++LI+ +C + EA
Sbjct: 114 PDVVTYNTLIDSLCKAGDLEEARRLHGGM-SSRGCVPNVVTYSVLINGLCKVGRIDEARE 172
Query: 68 LVSALSDSGFK--PDCFVYNTIMKG 90
L+ ++ P+ YN+ + G
Sbjct: 173 LIQEMTRKSCDVLPNIITYNSFLDG 197
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TY+ L+ LCK + + +M R S + PN++TY +D +C EA
Sbjct: 149 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 208
Query: 67 RLVSALSDSGFK--PDCFVYNTIMKG 90
L+ +L D + PD ++T++ G
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDG 234
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY+ LV CK + + M AS G PN+VT+ +ID +C +
Sbjct: 284 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM-ASRGCTPNVVTFNSIIDGLCKSD 342
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + + PD +N ++ G
Sbjct: 343 RSGEAFQIALQVYNRMLVPDKVTFNILIAG 372
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN +++ LC+ A G+ P +VTY +I+ +C + L M L L
Sbjct: 48 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107
Query: 73 SDSGFKPDCFVYNTIM 88
G PD YNT++
Sbjct: 108 VKRGHHPDVVTYNTLI 123
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD T+N L+ CK + ++M A ++P+++T+ LID +C +
Sbjct: 357 RMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK-NMQPDVMTFGALIDGLCKAGQVE 415
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++ + + G P+ YN ++ G
Sbjct: 416 AARDILDLMGNLGVPPNVVTYNVLVHG 442
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY LV LC+ V +++ S G P+ VTY IL+D + + +A+
Sbjct: 466 PESMTYGSLVYALCRASRTDDALQLVSKLK-SFGWDPDTVTYNILVDGLWKSGKTEQAIT 524
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G +PD F + G
Sbjct: 525 VLEEMVGKGHQPDSFTFAACFGG 547
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-ASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+I TYN + LCK + +R SL + P+ VT++ LID +C EA
Sbjct: 186 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 245
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ G+ P+ YN ++ G
Sbjct: 246 N--DDMIAGGYVPNVVTYNALVNG 267
>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Cucumis sativus]
Length = 830
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P + TY L+ C+ ++ +++F+ +M A+ + P VTYT+LI +C +
Sbjct: 579 LKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEAN-AVVPTHVTYTVLIKGLCRQNKM 637
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMK 89
E+++L+ + G PD YNTI++
Sbjct: 638 HESLQLLEYMYAKGLLPDSVTYNTIIQ 664
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L K ++ V +M G+ P+LVTYT LI C N+ EA
Sbjct: 337 VEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQ-GLNPDLVTYTTLICGHCQMGNIEEA 395
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L GFK + YN ++
Sbjct: 396 LKLRQETLSRGFKLNVIFYNMLL 418
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TYN +++C CK + +T + M P VTY +LI+ +C +L+
Sbjct: 650 KGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLH-NCDPTQVTYKVLINALCIFGDLK 708
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ R+V ++ D Y TI+K +
Sbjct: 709 DVDRMVVSIEDRNITLKKVTYMTIIKAH 736
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D F+YN L+ LC S+ F D M G++P++VTY L + A
Sbjct: 302 LLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKH-GVEPDVVTYNTLAKGFLLLGLMSGA 360
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++V + G PD Y T++ G+
Sbjct: 361 RKVVQKMLLQGLNPDLVTYTTLICGH 386
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P + T+N L+ C+ L ++ +R G+ P++VTYT L++ C
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLK-GLVPSVVTYTTLMNAYCEVG 600
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++E + + + P Y ++KG
Sbjct: 601 NMQEMFHFLHEMEANAVVPTHVTYTVLIKG 630
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D+ YN ++ + + +M GI P++VT+ LI+ C +L EA
Sbjct: 512 LMEDVVLYNIMIDGYVRLDGIAEAMQLYYKM-IERGITPSVVTFNTLINGFCRRGDLMEA 570
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G P Y T+M Y
Sbjct: 571 RKMLEVIRLKGLVPSVVTYTTLMNAY 596
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ TY L+ C+ ++ + Q S G K N++ Y +L+ +C
Sbjct: 367 MLLQGLNPDLVTYTTLICGHCQMGNIEEALK-LRQETLSRGFKLNVIFYNMLLSCLCKVG 425
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ L + +PD VY+ ++ G
Sbjct: 426 RIEEALTLFDEMETLRLEPDFIVYSILIHG 455
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I + N ++ CK + +F M + G+ + +Y IL+ +C ++
Sbjct: 265 KVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKN-GLLHDSFSYNILLHGLCVAGSMD 323
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ + G +PD YNT+ KG+
Sbjct: 324 EALGFTDDMEKHGVEPDVVTYNTLAKGF 351
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 34/121 (28%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR--------------------------- 37
+L PD Y+ L+ LCK + Y +QMR
Sbjct: 441 RLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEA 500
Query: 38 -------ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + ++V Y I+ID + EAM+L + + G P +NT++ G
Sbjct: 501 RNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLING 560
Query: 91 Y 91
+
Sbjct: 561 F 561
>gi|293334437|ref|NP_001169582.1| uncharacterized protein LOC100383463 [Zea mays]
gi|224030203|gb|ACN34177.1| unknown [Zea mays]
gi|413935329|gb|AFW69880.1| hypothetical protein ZEAMMB73_684747 [Zea mays]
Length = 622
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 2 IFKQLP------PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-----SLGIKPNLVTYT 50
+F+ LP PD TYN ++ LC+ L T D MRA G PN+V YT
Sbjct: 140 LFRFLPEAYAFAPDAITYNSMLAALCRAGDLATARRLFDGMRAGEQGGEAGAFPNVVAYT 199
Query: 51 ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+I C ++ EA+ L + G +P+ YNT+++G+
Sbjct: 200 TMIRACCASRLADEALSLFKMMLADGVRPNRITYNTMVQGF 240
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y +++ C R + M A G++PN +TY ++ C + E ++
Sbjct: 193 PNVVAYTTMIRACCASRLADEALSLFKMMLAD-GVRPNRITYNTMVQGFCQAGRM-ELVK 250
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V + DS FKPD +NT+M +
Sbjct: 251 EVFGM-DS-FKPDTCTFNTLMAAH 272
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++P P +TY L+ LC+ + +M P +VTY LI +
Sbjct: 178 IFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETK-ACSPTVVTYXSLIHGL 236
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C +K+L A+RL+ ++ G KP+ F Y+++M G+
Sbjct: 237 CQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGH 271
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++FTY+ L+ CK + +D M + + PN++TY+ L+ +C L+
Sbjct: 255 KGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHL-PNMITYSTLVHGLCKEGKLQ 313
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ ++ + G +PD +Y I+ G+
Sbjct: 314 EAVEILDRMKLQGLRPDAGLYGKIISGF 341
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY L+ LC+ + L + +++M AS GIKPN+ TY+ L+D C +
Sbjct: 220 KACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEM-ASKGIKPNVFTYSSLMDGHCKSGCSS 278
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + P+ Y+T++ G
Sbjct: 279 RALELLDMMVSRRHLPNMITYSTLVHG 305
>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN L+ LCK SL+ + V++M + G +PN++TY IL++ +C L EA
Sbjct: 388 PDIFTYNILMHGLCKEGSLSFARDLVNEM-SRRGCEPNVITYAILVNGLCKAGLLEEAGL 446
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ +S G + +YN ++
Sbjct: 447 VLHEMSARGLTINSVIYNCLI 467
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L D + N ++ LCK + + F+ + G P++VTY +++ +C
Sbjct: 591 MIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDA-INRGFVPDIVTYNSVLNGLCKVG 649
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++EA+ L L G +PD F YNT +
Sbjct: 650 RIKEALNLFDRLQVEGVRPDAFTYNTFI 677
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ D TYN L+K CK ++ +QM G+ + ++ I+I+ +C
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMD-GLGADTISCNIMINGLCKVG 614
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + GF PD YN+++ G
Sbjct: 615 KVDNAFEFLRDAINRGFVPDIVTYNSVLNG 644
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK + N D+++ G++P+ TY I C + +A
Sbjct: 633 PDIVTYNSVLNGLCKVGRIKEALNLFDRLQVE-GVRPDAFTYNTFISWQCKEGMVNDACL 691
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++GF P +N ++
Sbjct: 692 FFYRGIENGFVPSNLTWNVLV 712
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 33/115 (28%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N ++ LCK + VD+M G P+ +TY L+ +C L EA +
Sbjct: 286 PDVQTFNDVIHGLCKVNKIHDATKLVDRMLLR-GFYPDNMTYGFLLHGLCRIGKLNEARK 344
Query: 68 LV----------------------------SALSDS----GFKPDCFVYNTIMKG 90
++ S L+++ GF+PD F YN +M G
Sbjct: 345 ILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHG 399
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P +FT+ ++K LC + + + + M G PN + Y LI +
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH-GCVPNSIVYQTLIHALSQKN 267
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L+ + G PD +N ++ G
Sbjct: 268 QVSEALKLLEEMFVMGCMPDVQTFNDVIHG 297
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+FTYN L+ LCK + + M G N VTY LI + +
Sbjct: 489 KGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLD-GAVANNVTYNTLIHALLRRGAFQ 547
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ LV+ + G D YN ++K +
Sbjct: 548 KALTLVNDMLFRGCTLDKITYNGLIKAF 575
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ LC+ + N + +M + G KP+L TY LI +C + EA RL +
Sbjct: 463 YNCLICALCRKEKVHVALNLLSEM-CTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNM 521
Query: 73 SDSGFKPDCFVYNTIMKG 90
G + YNT++
Sbjct: 522 LLDGAVANNVTYNTLIHA 539
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ L + ++ +++M +G P++ T+ +I +C + +A +
Sbjct: 251 PNSIVYQTLIHALSQKNQVSEALKLLEEMFV-MGCMPDVQTFNDVIHGLCKVNKIHDATK 309
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + GF PD Y ++ G
Sbjct: 310 LVDRMLLRGFYPDNMTYGFLLHG 332
>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
Length = 332
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN +V C F+ +MR+ G++P++VTY L+D +C EA +
Sbjct: 80 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 138
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KPD Y T+++GY
Sbjct: 139 IFDSMTKRGLKPDITTYGTLLQGY 162
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y+ ++ K L Y+ ++M I PN+VTY +I +C + + +AM
Sbjct: 9 PPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKR-ISPNVVTYNSIIAALCKAQTVDKAM 67
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + SG PDC YN+I+ G+
Sbjct: 68 EVLTTMVKSGVMPDCMTYNSIVHGF 92
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P++ TYN ++ LCK +++ + M S G+ P+ +TY ++ C++
Sbjct: 38 MLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-GVMPDCMTYNSIVHGFCSSG 96
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 97 QPKEAIVFLKKMRSDGVEPDVVTYNSLM 124
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + ++ LV K + +MR G+ PN VTY +ID +C +
Sbjct: 178 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ-GLNPNAVTYGTVIDVLCKSG 236
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +AM + D G +PD VYN+++
Sbjct: 237 RVEDAMLYFEQMIDEGLRPDSIVYNSLIH 265
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ +L ++ +D M + GI PN ++IL+ + +
Sbjct: 146 RGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVE 204
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM + S + G P+ Y T++
Sbjct: 205 EAMLVFSKMRQQGLNPNAVTYGTVI 229
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ LCK T D M G+KP++ TY L+ L E
Sbjct: 113 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSM-TKRGLKPDITTYGTLLQGYATKGALVEM 171
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 172 HGLLDLMVRNGIHPNHYVFSILVCAY 197
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY ++ LCK + + +QM G++P+ + Y LI ++C
Sbjct: 216 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-IDEGLRPDSIVYNSLIHSLCIFDKWE 274
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + D G +N+I+ +
Sbjct: 275 KAEELFLEMLDRGICLSTIFFNSIIDSH 302
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+++YN L+ C C+ L + +M LG +P++VT + L++ C++K + +A+ L
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKM-MKLGYEPDIVTLSSLLNGYCHSKRISDAVAL 172
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + + G+KPD +NT++ G
Sbjct: 173 VDQMVEMGYKPDTVTFNTLIHG 194
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PPDI TY+ L+ LCK L + ++ S ++P++ TY I+I+ +
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS-KMEPDIYTYNIMIEGM 510
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L +LS G KP+ +Y T++ G+
Sbjct: 511 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGF 545
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+FTYN L+ CLC + + M I PN+VT++ LID L
Sbjct: 284 KGIRPDVFTYNSLISCLCNYGRWSDASRLLSNM-IERKINPNVVTFSALIDAFVKEGKLV 342
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGF 370
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PDI+TYN +++ +CK + ++ + G+KPN++ YT +I C E
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVIIYTTMISGFCRKGLKEE 553
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G PD YNT+++
Sbjct: 554 ADALFREMKEDGTLPDSGCYNTLIRA 579
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY LI C K
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK 409
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E M L +S G + YNT+++G
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQG 439
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY +V LCK + + + +M I+ ++V Y +ID +C K++ +A
Sbjct: 218 PDLVTYGAVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYNTIIDGLCKYKHIDDAFA 276
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + G +PD F YN+++
Sbjct: 277 LFNKMETKGIRPDVFTYNSLI 297
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ L + VDQM G +P+LVTY +++ +C ++ A+
Sbjct: 183 PDTVTFNTLIHGLFLHNKASEAVALVDQM-VQRGCQPDLVTYGAVVNGLCKRGDIDLALS 241
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + D +YNTI+ G
Sbjct: 242 LLKKMEKGKIEADVVIYNTIIDG 264
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ L + +M S G+ P+++TY+IL+D +C L
Sbjct: 424 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + L S +PD + YN +++G
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEG 509
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM +G KP+ VT+ LI + EA+
Sbjct: 147 EPDIVTLSSLLNGYCHSKRISDAVALVDQM-VEMGYKPDTVTFNTLIHGLFLHNKASEAV 205
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
LV + G +PD Y ++ G
Sbjct: 206 ALVDQMVQRGCQPDLVTYGAVVNG 229
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ D+ YN ++ LCK + + + ++M GI+P++ TY LI +CN +
Sbjct: 250 KIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETK-GIRPDVFTYNSLISCLCNYGRWSD 308
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + P+ ++ ++ +
Sbjct: 309 ASRLLSNMIERKINPNVVTFSALIDAF 335
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TYN L+K CK + + +M + G+ N VTY LI +
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYNTLIQGLFQAG 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + G PD Y+ ++ G
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K + V + ++M+ +L I +L +Y ILI+ C L A+
Sbjct: 78 PSIVEFNKLLSAIAKMKKFDLVISLGERMQ-NLRISYDLYSYNILINCFCRRSQLPLALA 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++PD ++++ GY
Sbjct: 137 VLGKMMKLGYEPDIVTLSSLLNGY 160
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY+ ++ C+ + T Y QM + G PNLVTY L+ +C + EA
Sbjct: 192 LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLCRNGLMDEA 250
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G +PD F Y+T+M G
Sbjct: 251 YELLDEMRERGLQPDKFSYDTLMAG 275
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ C+ T Y +++M + G++PN++TY LI C T +L EA +
Sbjct: 579 PNVVTYTALIDAFCRAGKPTVAYRLLEEMVGN-GVQPNVITYRSLIGGFCGTGDLEEARK 637
Query: 68 LVSALS-DSGFKPDCFVYNTIMKG 90
++ L D K D F Y +M G
Sbjct: 638 ILERLERDENCKADMFAYRVMMDG 661
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ Y+ L+ LCK L ++MR + +P++VT+T L+D +C L+EA
Sbjct: 298 PPDVVAYSTLIAGLCKAGRLDEACKLFEKMREN-SCEPDVVTFTALMDGLCKGDRLQEAQ 356
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + D P+ Y++++ G
Sbjct: 357 QVLETMEDRNCTPNVITYSSLIDG 380
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY LV CK + + +M A G +PN+VTYT LID C A R
Sbjct: 544 PDVYTYTSLVDGFCKVGRMVEARRVLKRM-AKRGCQPNVVTYTALIDAFCRAGKPTVAYR 602
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G +P+ Y +++ G+
Sbjct: 603 LLEEMVGNGVQPNVITYRSLIGGF 626
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TYN L+ CK + Y + +M+ S G+ PN+VTY+ +I C + A +
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKES-GLAPNVVTYSTVIHGFCRQTKVDTAYK 217
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++G P+ YNT++ G
Sbjct: 218 LFRQMVENGCMPNLVTYNTLLSG 240
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YNF++ LCK R+ ++ M + N++T+TI+ID +C L EA
Sbjct: 92 PDAAIYNFVIHALCKARNTAKALDYFRSMEC----EKNVITWTIMIDGLCKANRLPEATT 147
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ + YN ++ G+
Sbjct: 148 YFAKMKKKGTVPNEWTYNVLINGF 171
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK + +M GI+PN+VTY LI C T + A+
Sbjct: 369 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR-GIEPNVVTYNSLIHGFCMTNGVDSALL 427
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G PD YNT++ G
Sbjct: 428 LMEEMTATGCLPDIITYNTLIDG 450
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TYN L+ C + + +++M A+ G P+++TY LID +C T
Sbjct: 397 MIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTAT-GCLPDIITYNTLIDGLCKTG 455
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL + PD Y+ ++ G+
Sbjct: 456 RAPEANRLFGDMKAKFCNPDVITYSCLIGGF 486
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L+ LCK L ++ M PN++TY+ LID +C T +R+A
Sbjct: 334 PDVVTFTALMDGLCKGDRLQEAQQVLETME-DRNCTPNVITYSSLIDGLCKTGQVRDAQE 392
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G +P+ YN+++ G+
Sbjct: 393 VFKRMIVRGIEPNVVTYNSLIHGF 416
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ CK + D M + P++VT++ L++ CN + +A R
Sbjct: 474 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQ-AVLPDVVTFSTLVEGYCNAGLVDDAER 532
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + S PD + Y +++ G+
Sbjct: 533 LLEEMVASDCSPDVYTYTSLVDGF 556
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC+ + Y +D+MR G++P+ +Y L+ +C T + A++
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRER-GLQPDKFSYDTLMAGLCKTGKIDMALK 287
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S+ PD Y+T++ G
Sbjct: 288 VFEDNSNGDCPPDVVAYSTLIAG 310
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ T+ ++ LCK L + +M+ G PN TY +LI+ C + A L
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKK-GTVPNEWTYNVLINGFCKVHKVHRAYLL 183
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +SG P+ Y+T++ G+
Sbjct: 184 LKEMKESGLAPNVVTYSTVIHGF 206
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++TYN L + L + R + + + GI PN+ TY ++I +C + +L +A L
Sbjct: 23 NVYTYNRLFEALLRARRIDETCHILKNGWPP-GITPNVFTYAVVIQGLCKSGDLDKACEL 81
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + +SG PD +YN ++
Sbjct: 82 LEEMRESGPVPDAAIYNFVI 101
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD F+Y+ L+ LCK + + ++ P++V Y+ LI +C L
Sbjct: 260 RGLQPDKFSYDTLMAGLCKTGKIDMALKVFED-NSNGDCPPDVVAYSTLIAGLCKAGRLD 318
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + ++ +PD + +M G
Sbjct: 319 EACKLFEKMRENSCEPDVVTFTALMDG 345
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ C L ++++ K ++ Y +++D +C T + A+
Sbjct: 614 PNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALE 673
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ A+ SG P +Y +++G
Sbjct: 674 LLEAIKQSGTPPRHDIYVALIRG 696
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN L+ LCK SL+ + V++M + G +PN++TY IL++ +C L EA
Sbjct: 388 PDIFTYNILMHGLCKEGSLSFARDLVNEM-SRRGCEPNVITYAILVNGLCKAGLLEEAGL 446
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ +S G + +YN ++
Sbjct: 447 VLHEMSARGLTINSVIYNCLI 467
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L D + N ++ LCK + + F+ + G P++VTY +++ +C
Sbjct: 591 MIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDA-INRGFVPDIVTYNSVLNGLCKVG 649
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++EA+ L L G +PD F YNT +
Sbjct: 650 RIKEALNLFDRLQVEGVRPDAFTYNTFI 677
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ D TYN L+K CK ++ +QM G+ + ++ I+I+ +C
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMD-GLGADTISCNIMINGLCKVG 614
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + GF PD YN+++ G
Sbjct: 615 KVDNAFEFLRDAINRGFVPDIVTYNSVLNG 644
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK + N D+++ G++P+ TY I C + +A
Sbjct: 633 PDIVTYNSVLNGLCKVGRIKEALNLFDRLQVE-GVRPDAFTYNTFISWQCKEGMVNDACS 691
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++GF P +N ++
Sbjct: 692 FFYRGIENGFVPSNLTWNVLV 712
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 33/115 (28%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N ++ LCK + VD+M G P+ +TY L+ +C L EA +
Sbjct: 286 PDVQTFNDVIHGLCKVNKIHDATKLVDRMLLR-GFYPDNMTYGFLLHGLCRIGKLNEARK 344
Query: 68 LV----------------------------SALSDS----GFKPDCFVYNTIMKG 90
++ S L+++ GF+PD F YN +M G
Sbjct: 345 ILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHG 399
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P +FT+ ++K LC + + + + M G PN + Y LI +
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH-GCVPNSIVYQTLIHALSQKN 267
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L+ + G PD +N ++ G
Sbjct: 268 QVSEALKLLEEMFVMGCMPDVQTFNDVIHG 297
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+FTYN L+ LCK + + M G N VTY LI + +
Sbjct: 489 KGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLD-GAVANNVTYNTLIHALLRRGAFQ 547
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ LV+ + G D YN ++K +
Sbjct: 548 KALTLVNDMLFRGCTLDKITYNGLIKAF 575
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ LC+ + N + +M + G KP+L TY LI +C + EA RL +
Sbjct: 463 YNCLICALCRKEKVHVALNLLSEM-CTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNM 521
Query: 73 SDSGFKPDCFVYNTIMKG 90
G + YNT++
Sbjct: 522 LLDGAVANNVTYNTLIHA 539
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ L + ++ +++M +G P++ T+ +I +C + +A +
Sbjct: 251 PNSIVYQTLIHALSQKNQVSEALKLLEEMFV-MGCMPDVQTFNDVIHGLCKVNKIHDATK 309
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + GF PD Y ++ G
Sbjct: 310 LVDRMLLRGFYPDNMTYGFLLHG 332
>gi|242060260|ref|XP_002451419.1| hypothetical protein SORBIDRAFT_04g001815 [Sorghum bicolor]
gi|241931250|gb|EES04395.1| hypothetical protein SORBIDRAFT_04g001815 [Sorghum bicolor]
Length = 613
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS-LGIK----PNLVTYTILIDNVCNTKNL 62
PD+ TYN ++ LC+ L T + D MR S G K PN+VTYT +I C +
Sbjct: 144 PDVITYNSMLSALCRAGDLATAHKLFDGMRVSGQGGKADAFPNVVTYTTMIRACCAKRLA 203
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + G P+ YNT+++G+
Sbjct: 204 DEALSLFKMMVADGVPPNRITYNTMVQGF 232
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY +++ C R + M A G+ PN +TY ++ C + E ++
Sbjct: 185 PNVVTYTTMIRACCAKRLADEALSLFKMMVAD-GVPPNRITYNTMVQGFCEAGRM-ELVK 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V + FKPD +NT+M +
Sbjct: 243 EVFGMDS--FKPDTCTFNTLMAAH 264
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ TY+ +V LCK R + F +M+ G+KPN +TYT +I + N+ EA
Sbjct: 758 PPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQ-GLKPNTITYTTMISGLARVGNVLEAK 816
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L SG PD YN +++G
Sbjct: 817 DLFERFKSSGGIPDSACYNAMIEG 840
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN L+ LCK L D M+ + G+ PN++T I+ID +C + L EA
Sbjct: 409 PNLTSYNILIDMLCKAGELEAALKVQDSMKEA-GLFPNIITVNIMIDRLCKAQRLDEACS 467
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L PD + +++ G
Sbjct: 468 IFLGLDHKVCTPDSVTFCSLIDG 490
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L P+ +T+N L+ L K + M+ +L PN VTY+I+++ +C +
Sbjct: 717 LMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMK-NLKCPPNEVTYSIMVNGLCKVR 775
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + G KP+ Y T++ G
Sbjct: 776 KFNKAFVFWQEMQKQGLKPNTITYTTMISG 805
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN + C K + + F +++ S G+ P+ VT+T +I +C + + EA+ L
Sbjct: 271 DLVLYNVCIDCFGKVGKVDMAWKFFHELK-SQGLVPDDVTFTSMIGVLCKAERVDEAVEL 329
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L + P + YNT++ GY
Sbjct: 330 FEELDSNKSVPCVYAYNTMIMGY 352
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ CL + + ++ M+ + PNL +Y ILID +C L A++
Sbjct: 375 PSVIAYNCILTCLGRKGKVEEALRILEAMK--MDAAPNLTSYNILIDMLCKAGELEAALK 432
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ ++ ++G P+ N ++
Sbjct: 433 VQDSMKEAGLFPNIITVNIMI 453
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN ++ CK + Y +++M+ G++P +VTY +ID + L EA L
Sbjct: 620 DTRAYNIVIDGFCKSGKVNKAYQLLEEMKTK-GLQPTVVTYGSVIDGLAKIDRLDEAYML 678
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ VY++++ G+
Sbjct: 679 FEEAKSKAVDLNVVVYSSLIDGF 701
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ +Y+ L+ L K Y +M+ G+ + Y I+ID C + + +A
Sbjct: 582 LTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQ-GLHLDTRAYNIVIDGFCKSGKVNKA 640
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + G +P Y +++ G
Sbjct: 641 YQLLEEMKTKGLQPTVVTYGSVIDG 665
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P + TY ++ L K L Y ++ + S + N+V Y+ LID +
Sbjct: 650 KGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK-SKAVDLNVVVYSSLIDGFGKVGRID 708
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA ++ L G P+ + +N ++
Sbjct: 709 EAYLILEELMQKGLTPNTYTWNCLL 733
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ N + C+ K + ++++A G+ P++ +Y+ILI +
Sbjct: 542 MMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQ-GLTPDVRSYSILIHGLVKGG 600
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +L + + G D YN ++ G+
Sbjct: 601 FSKDTYKLFYEMKEQGLHLDTRAYNIVIDGF 631
>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
gi|223948163|gb|ACN28165.1| unknown [Zea mays]
gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
Length = 786
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ KC ++Q++ S +KP++V+Y +I+ C ++EA
Sbjct: 627 LSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEA 686
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++S + G P Y+T++ GY
Sbjct: 687 QRVLSEMVADGMAPCAVTYHTLVGGY 712
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L++ K + T + +M + G +P+ VTY L EA R
Sbjct: 278 PCVVTYNALLQVFGKAGNYTEALRVLGEMEQN-GCQPDAVTYNELAGTYARAGFFEEAAR 336
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G P+ F YNT+M Y
Sbjct: 337 CLDTMASKGLLPNAFTYNTVMTAY 360
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ +C S T + ++M S G P + TY L++ + + A +VS
Sbjct: 457 TYNTLIAAYGRCGSRTNAFKMYNEM-TSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSK 515
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GFKP+ Y+ +++ Y
Sbjct: 516 MRTKGFKPNEQSYSLLLQCY 535
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT + ++ C+ + F + ++A G P +VTY L+ N EA+R
Sbjct: 243 PDGFTASTVIAACCRDGLVDEAVAFFEDLKAR-GHAPCVVTYNALLQVFGKAGNYTEALR 301
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G +PD YN + Y
Sbjct: 302 VLGEMEQNGCQPDAVTYNELAGTY 325
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +N ++ K + D ++ S G+ P+L+TY L+D EA +
Sbjct: 594 PDLVIFNSMLSIYAKNGMYSKATEVFDSIKRS-GLSPDLITYNSLMDMYAKCSESWEAEK 652
Query: 68 LVSALSDS-GFKPDCFVYNTIMKGY 91
+++ L S KPD YNT++ G+
Sbjct: 653 ILNQLKCSQTMKPDVVSYNTVINGF 677
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L + +D M AS G+ PN TY ++ N + EA+
Sbjct: 313 PDAVTYNELAGTYARAGFFEEAARCLDTM-ASKGLLPNAFTYNTVMTAYGNVGKVDEALA 371
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + +GF P+ YN ++
Sbjct: 372 LFDQMKKTGFVPNVNTYNLVL 392
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ +YN ++ CK + + +M A G+ P VTY L+ + +
Sbjct: 661 QTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVAD-GMAPCAVTYHTLVGGYSSLEMFS 719
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G KP Y +++ Y
Sbjct: 720 EAREVIGYMVQHGLKPMELTYRRVVESY 747
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ FTYN ++ + DQM+ + G PN+ TY +++ +
Sbjct: 344 KGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKT-GFVPNVNTYNLVLGMLGKKSRFT 402
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+ ++ +S SG P+ +NT++
Sbjct: 403 VMLEMLGEMSRSGCTPNRVTWNTML 427
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 22 KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81
KCR L + +++A G P+LV + ++ +A + ++ SG PD
Sbjct: 573 KCRRLDGMETAFQEVKAR-GYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDL 631
Query: 82 FVYNTIMKGY 91
YN++M Y
Sbjct: 632 ITYNSLMDMY 641
>gi|145358679|ref|NP_198856.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171831|sp|Q9FND8.1|PP409_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g40400
gi|10178151|dbj|BAB11596.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|110742507|dbj|BAE99171.1| hypothetical protein [Arabidopsis thaliana]
gi|332007160|gb|AED94543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 610
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV C+ L + ++ ++ + P+LVTYT LI +C +REA +
Sbjct: 269 PDLVTYNTLVSSYCRRGRLKEAF-YLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQ 327
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ D G KPDC YNT++ Y
Sbjct: 328 TFHRMVDRGIKPDCMSYNTLIYAY 351
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +T+N L C + V +F+++M G +P+LVTY L+ + C L+EA
Sbjct: 234 PNTYTFNILTNVFCNDSNFREVDDFLEKMEEE-GFEPDLVTYNTLVSSYCRRGRLKEAFY 292
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + PD Y +++KG
Sbjct: 293 LYKIMYRRRVVPDLVTYTSLIKG 315
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+GI PN T+ IL + CN N RE + + + GF+PD YNT++ Y
Sbjct: 230 VGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSY 281
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TY L+K LCK + + +M GIKP+ ++Y LI C ++
Sbjct: 300 RRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRM-VDRGIKPDCMSYNTLIYAYCKEGMMQ 358
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +L+ + + PD F I++G+
Sbjct: 359 QSKKLLHEMLGNSVVPDRFTCKVIVEGF 386
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L++ L +C ++ +++ + + TY LI +C REA L++
Sbjct: 449 TYNNLIESLSRCDAIEEALVLKGKLKNQNQVL-DAKTYRALIGCLCRIGRNREAESLMAE 507
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ DS KPD F+ ++ GY
Sbjct: 508 MFDSEVKPDSFICGALVYGY 527
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
KQ+ P++ TYN LV LCK + VD+M G N++TY ++D +C ++
Sbjct: 367 KQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDR-GQPSNIITYNSILDAICKNNHVD 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ + + G +PD F Y ++ G
Sbjct: 426 KAIVLLTKIKEKGIQPDIFTYTVLING 452
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD+ TY+ L+ C L + ++M S I PN+ T++ILID C
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRM-ISDNINPNVYTFSILIDGFCKEG 282
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+REA +++ + K D YN++M GY
Sbjct: 283 KVREAKNVLAVMMKKNVKLDVVTYNSLMDGY 313
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDIFTY L+ LCK L + + G PN+ TYT LI+ CN
Sbjct: 437 KGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVK-GYSPNIYTYTSLINGFCNKGFFD 495
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E + ++S + D+G P+ Y ++
Sbjct: 496 EGLAMLSKMKDNGCIPNAITYEILI 520
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P +I TYN ++ +CK + + +++ GI+P++ TYT+LI+ +C L +A
Sbjct: 405 PSNIITYNSILDAICKNNHVDKAIVLLTKIKEK-GIQPDIFTYTVLINGLCKVGRLDDAQ 463
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ L G+ P+ + Y +++ G+
Sbjct: 464 KVFEDLLVKGYSPNIYTYTSLINGF 488
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TYN L+ C + + + + M A G+ P++ +Y+I+I+ C K +
Sbjct: 297 KNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVM-AQRGVTPDVWSYSIMINGFCKIKMVD 355
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM+L + P+ YN+++ G
Sbjct: 356 EAMKLFEEMHCKQIFPNVVTYNSLVDG 382
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+++T++ L+ CK + N + M +K ++VTY L+D C K
Sbjct: 259 MISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKK-NVKLDVVTYNSLMDGYCLVK 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L + ++ G PD + Y+ ++ G+
Sbjct: 318 QVNKAKSLFNVMAQRGVTPDVWSYSIMINGF 348
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LC+ + ++ L ++PN+V Y+ +ID++C K + +A L
Sbjct: 162 DQVSYGTLINGLCRVGETKAAVQLLRRVDGKL-VRPNVVMYSTIIDSMCKDKLVNDAFDL 220
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ PD Y++++ G+
Sbjct: 221 YCEMVSKRISPDVVTYSSLISGF 243
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + PD T N L+ C + + ++ ++ G P+ VT+TILI +C +
Sbjct: 86 FNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKK-GYHPDAVTFTILIKGLCLKGEV 144
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + GF+ D Y T++ G
Sbjct: 145 HKALYFHDKVVAQGFQLDQVSYGTLING 172
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD T+ L+K LC + F D++ A G + + V+Y LI+ +C +
Sbjct: 122 KGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQ-GFQLDQVSYGTLINGLCRVGETK 180
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A++L+ + +P+ +Y+TI+
Sbjct: 181 AAVQLLRRVDGKLVRPNVVMYSTII 205
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD TYN L++ LC + +D+M GI+P+LVTY LI +++
Sbjct: 755 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TERGIQPDLVTYNTLISGYSMKGDVK 813
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + + + GF P YN +++G
Sbjct: 814 DALRIRNEMMNKGFNPTLLTYNALIQG 840
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ +Q+P P+ TYN ++ C + + + +MR GI PN TY +I C
Sbjct: 505 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 564
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIMKGY 91
+ EA+++ + G KP+ +YN ++ GY
Sbjct: 565 RVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 596
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTYN L+ CK ++ + M + G++ +VTYT LI + ++
Sbjct: 650 KGLAPDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTALIYALSKKGQVQ 708
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E +L G +PD +YN ++ +
Sbjct: 709 ETDKLFDEAVRRGIRPDLVLYNALINSH 736
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ ++ + + +M I P+ VTY L+ +C + EA +
Sbjct: 724 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR-IAPDDVTYNTLMRGLCLLGRVDEARK 782
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +++ G +PD YNT++ GY
Sbjct: 783 LIDEMTERGIQPDLVTYNTLISGY 806
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN LV L T Y V++M G+ P++ TY ILI+ C N+++A+ +
Sbjct: 621 VATYNLLVHALFMDGRGTEAYELVEEMGGK-GLAPDVFTYNILINGHCKEGNVKKALEIF 679
Query: 70 SALSDSGFKPDCFVYNTIM 88
+S G + Y ++
Sbjct: 680 ENMSRRGVRATVVTYTALI 698
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ YN L+ C L T + D+M G+ + TY +L+ + E
Sbjct: 581 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRM-VERGVAMTVATYNLLVHALFMDGRGTE 639
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A LV + G PD F YN ++ G+
Sbjct: 640 AYELVEEMGGKGLAPDVFTYNILINGH 666
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ + ++M + G P L+TY LI +C
Sbjct: 790 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM-MNKGFNPTLLTYNALIQGLCKNGQGD 848
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +V + ++G PD Y ++++G
Sbjct: 849 DAENMVKEMVENGITPDDSTYISLIEG 875
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD TYN L++ LC + +D+M GI+P+LVTY LI +++
Sbjct: 386 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TERGIQPDLVTYNTLISGYSMKGDVK 444
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + + + GF P YN +++G
Sbjct: 445 DALRIRNEMMNKGFNPTLLTYNALIQG 471
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ +Q+P P+ TYN ++ C + + + +MR GI PN TY +I C
Sbjct: 136 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 195
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIMKGY 91
+ EA+++ + G KP+ +YN ++ GY
Sbjct: 196 RVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 227
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTYN L+ CK ++ + M + G++ +VTYT LI + ++
Sbjct: 281 KGLAPDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTALIYALSKKGQVQ 339
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E +L G +PD +YN ++ +
Sbjct: 340 ETDKLFDEAVRRGIRPDLVLYNALINSH 367
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ ++ + + +M I P+ VTY L+ +C + EA +
Sbjct: 355 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR-IAPDDVTYNTLMRGLCLLGRVDEARK 413
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +++ G +PD YNT++ GY
Sbjct: 414 LIDEMTERGIQPDLVTYNTLISGY 437
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN LV L T Y V++M G+ P++ TY ILI+ C N+++A+ +
Sbjct: 252 VATYNLLVHALFMDGRGTEAYELVEEMGGK-GLAPDVFTYNILINGHCKEGNVKKALEIF 310
Query: 70 SALSDSGFKPDCFVYNTIM 88
+S G + Y ++
Sbjct: 311 ENMSRRGVRATVVTYTALI 329
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ YN L+ C L T + D+M G+ + TY +L+ + E
Sbjct: 212 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRM-VERGVAMTVATYNLLVHALFMDGRGTE 270
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A LV + G PD F YN ++ G+
Sbjct: 271 AYELVEEMGGKGLAPDVFTYNILINGH 297
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ + ++M + G P L+TY LI +C
Sbjct: 421 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM-MNKGFNPTLLTYNALIQGLCKNGQGD 479
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +V + ++G PD Y ++++G
Sbjct: 480 DAENMVKEMVENGITPDDSTYISLIEG 506
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N +V LCK V +F+ +M + GI ++VTY LI C L EA +
Sbjct: 117 NVYTLNIMVNALCKDGKFDDVKSFLSEMEGN-GIYADMVTYNTLIGAYCREGLLEEAFEI 175
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++++D G KP F YN I+ G
Sbjct: 176 MNSMADKGLKPSLFTYNAIING 197
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PDI YN L+ CK + D M S I PN +TY ILI+ C+ ++
Sbjct: 392 RNIKPDIVAYNTLIDGFCKVGEMEKASELWDGM-ISRKIFPNHITYGILINAYCSVGHVS 450
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL + + G KP NT++KGY
Sbjct: 451 EAFRLWDVMIEKGIKPTLVTCNTVIKGY 478
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN ++ LCK + LT D+M G P+ T+T LI C N+ +A+ L
Sbjct: 327 DVIAYNTILNGLCKEKMLTDADKLFDEM-VERGALPDFYTFTTLIHGHCQDGNMTKALSL 385
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ KPD YNT++ G+
Sbjct: 386 FGTMTQRNIKPDIVAYNTLIDGF 408
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P + T N ++K C+ + F+ +M A G+ P+ ++Y LI+
Sbjct: 459 MIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAK-GVAPDHISYNTLINGFVRED 517
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ +A ++ + G PD YN +M G+
Sbjct: 518 NMDKAFLWINKMEKEGLLPDIITYNVVMNGF 548
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+ C+ L + ++ M A G+KP+L TY +I+ +C A +
Sbjct: 152 DMVTYNTLIGAYCREGLLEEAFEIMNSM-ADKGLKPSLFTYNAIINGLCKKGRYARAKGI 210
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + + G PD YNT++
Sbjct: 211 LIEMLNIGLSPDTTTYNTLL 230
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +++ L+ + R L + M+ G+ P+ V YT+L+ C N+ EA++
Sbjct: 256 PDLVSFSSLIAVFSRNRHLDQALVYFRDMK-KFGLVPDNVIYTVLMHGYCRNGNMLEALK 314
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G D YNTI+ G
Sbjct: 315 IRDEMLEQGCVLDVIAYNTILNG 337
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD +YN L+ + ++ + ++++M G+ P+++TY ++++ C
Sbjct: 494 MIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKE-GLLPDIITYNVVMNGFCRQG 552
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + + G PD Y ++ G+
Sbjct: 553 RMQEAELVLRKMIEKGINPDRSTYTALINGH 583
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P +FTYN ++ LCK + +M ++G+ P+ TY L+ C N
Sbjct: 182 KGLKPSLFTYNAIINGLCKKGRYARAKGILIEM-LNIGLSPDTTTYNTLLVESCRRDNFS 240
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA + + G PD +++++
Sbjct: 241 EAKEIFGEMLRQGVVPDLVSFSSLI 265
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN ++ C+ + + +M GI P+ TYT LI+ NL EA
Sbjct: 534 LLPDIITYNVVMNGFCRQGRMQEAELVLRKM-IEKGINPDRSTYTALINGHVTQDNLNEA 592
Query: 66 MRLVSALSDSGFKPD 80
R + GF PD
Sbjct: 593 FRFHDEMLQRGFAPD 607
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN L+ C+ + + +M G+ P+LV+++ LI ++L +A
Sbjct: 219 LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQ-GVVPDLVSFSSLIAVFSRNRHLDQA 277
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD +Y +M GY
Sbjct: 278 LVYFRDMKKFGLVPDNVIYTVLMHGY 303
>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 627
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN +V C F+ +MR+ G++P++VTY L+D +C EA +
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 207
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KPD Y T+++GY
Sbjct: 208 IFDSMTKRGLKPDITTYGTLLQGY 231
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y+ ++ K L + +DQ I PN+VTY +I +C + + +AM
Sbjct: 85 PPDVVSYSTVINGFFKEGDLDKM---LDQR-----ISPNVVTYNSIIAALCKAQTVDKAM 136
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + SG PDC YN+I+ G+
Sbjct: 137 EVLTTMVKSGVMPDCMTYNSIVHGF 161
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TYN ++ LCK +++ + M S G+ P+ +TY ++ C++
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-GVMPDCMTYNSIVHGFCSSG 165
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 166 QPKEAIVFLKKMRSDGVEPDVVTYNSLM 193
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + ++ LV K + +MR G+ PN VTY +ID +C +
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ-GLNPNAVTYGTVIDVLCKSG 305
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +AM + D G +PD VYN+++
Sbjct: 306 RVEDAMLYFEQMIDEGLRPDSIVYNSLIH 334
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ +L ++ +D M + GI PN ++IL+ + +
Sbjct: 215 RGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVE 273
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM + S + G P+ Y T++
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVI 298
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ LCK T D M G+KP++ TY L+ L E
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSM-TKRGLKPDITTYGTLLQGYATKGALVEM 240
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 241 HGLLDLMVRNGIHPNHYVFSILVCAY 266
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFK--PDCFVYNTIMKGY 91
P++ +Y IL++ +C+ +EA+ L+ ++D G PD Y+T++ G+
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGF 98
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY ++ LCK + + +QM G++P+ + Y LI ++C
Sbjct: 285 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-IDEGLRPDSIVYNSLIHSLCIFDKWE 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + D G +N+I+ +
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSIIDSH 371
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + +++T + ++ C C+CR L ++ + ++ LG +PN +T++ LI+ +C +
Sbjct: 116 LKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKI-IKLGYEPNTITFSTLINGLCLEGRV 174
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ LV + + G KPD NT++ G
Sbjct: 175 SEALELVDRMVEMGHKPDLITINTLVNG 202
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TY L+ CK L VD M S G PN+ T+ ILI+ C
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM-VSKGCDPNIRTFNILINGYCKAN 417
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + L +S G D YNT+++G+
Sbjct: 418 RIDDGLELFRKMSLRGVVADTVTYNTLIQGF 448
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + D TYN L++ C+ L +M S + PN+VTY IL+D +C+
Sbjct: 431 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM-VSRKVPPNIVTYKILLDGLCDNGES 489
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + S + D +YN I+ G
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHG 517
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI YN ++ +C + ++ + G+KP + TY I+I +C L E
Sbjct: 503 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSE 561
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + + G PD + YN +++ +
Sbjct: 562 AELLFRKMEEDGHAPDGWTYNILIRAH 588
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L +M GI P+ +TYT LID C
Sbjct: 324 MIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM-IHRGIAPDTITYTSLIDGFCKEN 382
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +A ++V + G P+ +N ++ GY
Sbjct: 383 HLDKANQMVDLMVSKGCDPNIRTFNILINGY 413
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+ T++ L+ LC ++ VD+M +G KP+L+T L++ +C + EAM
Sbjct: 155 EPNTITFSTLINGLCLEGRVSEALELVDRM-VEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ + + G +P+ Y ++
Sbjct: 214 LLIDKMVEYGCQPNAVTYGPVL 235
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + D Y+ ++ LCK SL +N ++M GI N++TY ILI CN
Sbjct: 257 RNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWD 315
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +L+ + P+ ++ ++ +
Sbjct: 316 DGAKLLRDMIKRKINPNVVTFSVLIDSF 343
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T N LV LC +D+M G +PN VTY +++ +C + AM
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDKM-VEYGCQPNAVTYGPVLNVMCKSGQTALAME 249
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + K D Y+ I+ G
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDG 272
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY ++ +CK + +M IK + V Y+I+ID +C +L A
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEER-NIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G + YN ++ G+
Sbjct: 285 LFNEMEMKGITTNIITYNILIGGF 308
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ L K + Y V +M G KPN++TY++L++ +C K L A+
Sbjct: 497 PTVVTYNTLINGLSKAERFSEAYALVKEMLHK-GWKPNMITYSLLMNGLCQGKKLDMALN 555
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + GFKPD ++N I+ G
Sbjct: 556 LWCQALEKGFKPDVKMHNIIIHG 578
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I +YN ++ LCKC + +M+ + + +L TY+ LI +C + NL A R
Sbjct: 253 PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ-DLYTYSTLIHGLCGSGNLDGATR 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++++G PD VYNT++ GY
Sbjct: 312 VYKEMAENGVSPDVVVYNTMLNGY 335
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +YN L+ L + +F ++G+ PNL TY ILI C K +A
Sbjct: 112 PGIRSYNSLLNALIESNKWDEAESFFLYFE-TMGLSPNLQTYNILIKISCRKKQFDKAKE 170
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + + GF PD F Y T++
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLI 191
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ TY+ L+ LC+ + L N Q G KP++ + I+I +C++
Sbjct: 525 MLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK-GFKPDVKMHNIIIHGLCSSG 583
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A++L S + P+ +NT+M+G+
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TYN L+K C+ + ++ M G P++ +Y LI+++ + +A
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ-GFSPDVFSYGTLINSLAKNGYMSDA 203
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L + + G PD YN ++ G+
Sbjct: 204 LKLFDEMPERGVTPDVACYNILIDGF 229
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F Y+ ++ LC+ L V +DQM G KPN +I+ L +A+R
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKH-GCKPNPHVCNAVINGFVRASKLEDALRF 486
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G P YNT++ G
Sbjct: 487 FGNMVSKGCFPTVVTYNTLING 508
Score = 40.8 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ +N ++ LC + +M+ + PNLVT+ L++ ++
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCV-PNLVTHNTLMEGFYKVRDFE 621
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++ + G +PD YN +KG
Sbjct: 622 RASKIWDHILQYGPQPDIISYNITLKG 648
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ K R D + G +P++++Y I + +C+ + +A+
Sbjct: 602 PNLVTHNTLMEGFYKVRDFERASKIWDHI-LQYGPQPDIISYNITLKGLCSCHRISDAVG 660
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ D G P +N +++
Sbjct: 661 FLNDAVDRGVLPTAITWNILVRA 683
>gi|413935336|gb|AFW69887.1| hypothetical protein ZEAMMB73_120375 [Zea mays]
Length = 453
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 2 IFKQLP------PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-----ASLGIKPNLVTYT 50
+F+ LP PD TYN ++ LC+ L T D MR G PN+VTYT
Sbjct: 75 LFRFLPEAYAFAPDAITYNSMLAALCRAGDLATARRLFDGMRVGEQGGEAGAFPNVVTYT 134
Query: 51 ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+I C + EA+ L + G +P+ YNT+M+G+
Sbjct: 135 TMIRACCARRLADEALSLFKMMLVEGVRPNRITYNTMMQGF 175
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY +++ C R + M G++PN +TY ++ C + E ++
Sbjct: 128 PNVVTYTTMIRACCARRLADEALSLFKMMLVE-GVRPNRITYNTMMQGFCQAGRM-ELVK 185
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V + FKPD +NT+M +
Sbjct: 186 EVFGMDS--FKPDTCTFNTLMAAH 207
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
KQ+ PD+ TYN L+ LCK ++ + +M G PN++TY L+D +C ++
Sbjct: 378 KQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDR-GQPPNIITYNSLLDALCKNHHVD 436
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ L D +P YN ++ G
Sbjct: 437 KAIELLTKLKDHNIQPSVCTYNILING 463
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+I TYN L+ LCK + + +++ I+P++ TY ILI+ +C + L++A
Sbjct: 416 PPNIITYNSLLDALCKNHHVDKAIELLTKLKDH-NIQPSVCTYNILINGLCKSGRLKDAQ 474
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G+ D + YNT++KG+
Sbjct: 475 KVFEDVLVNGYNIDVYTYNTMIKGF 499
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TYN L+ C + + + M A +G+ P++ +Y+I+I C K +
Sbjct: 308 KDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM-AQIGVAPDVHSYSIMISGFCKIKMVD 366
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM+L + PD YN+++ G
Sbjct: 367 EAMKLFEEMHCKQIFPDVVTYNSLIDG 393
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P + TYN L+ LC L + +M I P + T++IL+D C
Sbjct: 235 MVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILE-NINPTVYTFSILVDAFCKEG 293
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA + + KP+ YN++M GY
Sbjct: 294 KVKEAKNVFVVMMKKDVKPNIVTYNSLMNGY 324
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
+I + + P ++T++ LV CK + N FV M+ +KPN+VTY L++ C
Sbjct: 270 MILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKD--VKPNIVTYNSLMNGYCLV 327
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + ++ G PD Y+ ++ G+
Sbjct: 328 NEVNKAESIFNTMAQIGVAPDVHSYSIMISGF 359
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD T L+K LC + +F D++ A LG + N V+Y LI+ +C +
Sbjct: 133 KGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLA-LGFQLNQVSYRTLINGLCKVGQTK 191
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + + D +YNTI+ G
Sbjct: 192 AALEMLRRIDGKLVRLDVVMYNTIIDG 218
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P I + ++ L K + V + QM + GI NLVT +ILI+ +
Sbjct: 63 KNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFN-GIASNLVTLSILINCFSQLGHNS 121
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + S + G++PD T++KG
Sbjct: 122 LSFSVFSNILKKGYEPDAITLTTLIKG 148
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +L P+I TYN L+ LCK +++ + ++++ S GI PN +TY LID C
Sbjct: 707 MLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQ-SKGISPNAITYNTLIDGHCKDG 765
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N EA +L + G +P F Y ++ G
Sbjct: 766 NTTEAFKLKQKMIKEGIQPTVFTYTILIHG 795
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN L+ CK + T + +M GI+P + TYTILI +C +
Sbjct: 745 KGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKE-GIQPTVFTYTILIHGLCTQGYME 803
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++L+ + ++ P+ Y T+++GY
Sbjct: 804 EAIKLLDQMIENNVDPNFITYWTLIQGY 831
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD FTY+ L+ S+ + D+M S + PN+VTY LI +C +
Sbjct: 672 LKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEM-LSARLTPNIVTYNSLIYGLCKSC 730
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A+ L + L G P+ YNT++ G+
Sbjct: 731 NVSRAVSLFNKLQSKGISPNAITYNTLIDGH 761
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K L P++ TY LVK CK + V +++ + I + V Y LI+ C
Sbjct: 225 LQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRG 284
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A R+ + D+G + + FVYNT++ GY
Sbjct: 285 RMEDANRVRDEMIDAGVQVNMFVYNTMINGY 315
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P +FTY L+ LC + +DQM + + PN +TY LI
Sbjct: 777 MIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIEN-NVDPNFITYWTLIQGYARCG 835
Query: 61 NLREAMRLVSALSDSGFKP 79
N++ +L + + G P
Sbjct: 836 NMKAITKLYNEMHICGLLP 854
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +N + L + V + +M A G+ PN VTY LI C NL +A
Sbjct: 513 PSVEMFNSFITGLFIAKQSGKVNDIRVEMSAK-GLSPNTVTYGALIAGWCKEGNLHDACI 571
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G KP+ F+ + ++ +
Sbjct: 572 LYFEMVEKGLKPNLFICSVLVSCF 595
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L ++ T N ++ LCK R +T +M+ + +TY LID C +L
Sbjct: 439 RGLARNVVTINTVINGLCKNRRMTEAEELFHRMK-EWSCPCDSLTYRTLIDGYCKLGDLG 497
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++ + + GF P ++N+ + G
Sbjct: 498 RATQIRIEMENLGFVPSVEMFNSFITG 524
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++F YN ++ CK + V + Q G+ + +Y L+D C + +A
Sbjct: 304 NMFVYNTMINGYCKLGRMGEVEKLL-QANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFET 362
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ +GF YNT++ G+
Sbjct: 363 CDMMVRNGFTGTTLTYNTLLNGF 385
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD++T+N LV CK + D M GIKPN VTY L+D C K
Sbjct: 286 MILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ-GIKPNFVTYNSLMDGYCLVK 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + ++ G PD Y+ ++ G+
Sbjct: 345 EVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TY+ L+ L K ++ VDQM G+ P + TY ++D +C +
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR-GVPPTIRTYNSILDALCKIHQVD 452
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ L D G +P+ + Y+ ++KG
Sbjct: 453 KAIALLTKLKDKGIQPNMYTYSILIKG 479
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD+ TY+ L+ C L + ++M IKP++ T+ IL++ C
Sbjct: 251 MISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILE-NIKPDVYTFNILVNAFCKDG 309
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++E + + G KP+ YN++M GY
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP I TYN ++ LCK + + +++ GI+PN+ TY+ILI +C + L
Sbjct: 429 RGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDK-GIQPNMYTYSILIKGLCQSGKLE 487
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ L G + Y +++G+
Sbjct: 488 DARKVFEGLLVKGHNLNVDTYTIMIQGF 515
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK + + ++ +L ++PN+V Y +ID++C K + EA L
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNL-VQPNVVMYNTIIDSMCKVKLVNEAFDL 247
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + G PD Y+ ++ G+
Sbjct: 248 FSEMISKGISPDVVTYSALISGF 270
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ +CK + + ++ +M S GI P++VTY+ LI C L +A+
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEM-ISKGISPDVVTYSALISGFCILGKLNDAID 281
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + KPD + +N ++ +
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAF 305
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ KQ + P+ TYN L+ C + + + + M A G+ P++ +Y+I+I+ C
Sbjct: 320 MMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM-AQGGVNPDIQSYSIMINGFCKI 378
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K EAM L + PD Y++++ G
Sbjct: 379 KKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+++TY+ L+K LC+ L + + G N+ TYTI+I C
Sbjct: 464 KGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK-GHNLNVDTYTIMIQGFCVEGLFN 522
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ L+S + D+G PD Y I+
Sbjct: 523 EALALLSKMEDNGCIPDAKTYEIII 547
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L+K LC + + F D++ A LG + ++Y LI +C R A+
Sbjct: 153 PDTITFTTLIKGLCLKGQIQQAFLFHDKVVA-LGFHFDQISYGTLIHGLCKVGETRAALD 211
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + + +P+ +YNTI+
Sbjct: 212 LLQRVDGNLVQPNVVMYNTII 232
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + P F +N ++ L K + TV ++ Q GIKPNLV ILI+ C
Sbjct: 76 LLRRNTTPPAFEFNKILGSLVKSKHYHTVL-YLSQKMEFRGIKPNLVNCNILINCFCQLG 134
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + + G+ PD + T++KG
Sbjct: 135 LIPFAFSVFAKILKMGYVPDTITFTTLIKG 164
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ + P++ N L+ C C+ + ++ ++ +G P+ +T+T LI +C +
Sbjct: 113 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKI-LKMGYVPDTITFTTLIKGLCLKGQI 171
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
++A + GF D Y T++ G
Sbjct: 172 QQAFLFHDKVVALGFHFDQISYGTLIHG 199
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TY+ ++ LC+C + + +++M S G KP++VTYT+L+ +C + EA
Sbjct: 260 APDVVTYSTIIDGLCRCGDVDKGFALLEKM-VSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RLV + + G P+ Y+ + G
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDG 342
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ CK + Y F+++M+ G P+ TY+ILI+ +C + NLR+A
Sbjct: 154 PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADE 213
Query: 68 LVSALSDSGFKPDC----FVYNTIMKGY 91
L+ + + DC +NT++ GY
Sbjct: 214 LLQEMIG---RKDCCASVVAFNTLVDGY 238
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ L+ LCK +L + +M ++V + L+D C ++L A
Sbjct: 190 PDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARE 249
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+S++ + G PD Y+TI+ G
Sbjct: 250 LLSSMLEHGCAPDVVTYSTIIDG 272
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P YNF V LCK + V M+ KP++VT+ LI +C L EA
Sbjct: 50 MAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDG-ACKPDVVTFNTLIAGLCKAGRLDEA 108
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + SGF + YNT++ G
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLING 133
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ LCK L +D+M S G NLVTY LI+ + + EA+
Sbjct: 87 PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERS-GFAANLVTYNTLINGLSSAGRSGEAVL 145
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ ++ + PD YN I+ G+
Sbjct: 146 VMQGMTTT---PDTQTYNAIIHGF 166
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +TY LV+ C L + + +M G+ P Y + +C + + EAM +
Sbjct: 17 DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + D KPD +NT++ G
Sbjct: 77 VKNMKDGACKPDVVTFNTLIAG 98
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ TY LV LCK + V +M G PN VTY+++ D +C
Sbjct: 289 MVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLED-GCTPNAVTYSLVFDGLCKID 347
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A L++++ D G D + ++
Sbjct: 348 KLDMANDLLTSIRDKGRITDVVAFEALL 375
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ +N LV CK + L + M G P++VTY+ +ID +C ++ + L+
Sbjct: 228 VVAFNTLVDGYCKAQDLDRARELLSSMLEH-GCAPDVVTYSTIIDGLCRCGDVDKGFALL 286
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G KPD Y ++ G
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTG 307
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP++ TYN LV LCK + F+++M +S G P+ +TY L+ +C +A
Sbjct: 357 VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSS-GCVPDSITYGSLVYALCRASRTDDA 415
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++LVS L G+ PD YN ++ G
Sbjct: 416 LQLVSELKSFGWDPDTVTYNILVDG 440
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ T+ L+ LCK + + +D M +LG+ PN+VTY L+ +C +
Sbjct: 317 MVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM-GNLGVPPNVVTYNALVHGLCKSG 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA + + + SG PD Y +++
Sbjct: 376 RIEEACQFLEEMVSSGCVPDSITYGSLV 403
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD T++ L+ LCKC + + D M A G PN++TY L++ +C +
Sbjct: 176 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAG-GYVPNVITYNALVNGLCKADKMER 234
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ ++ D G PD Y+ ++ +
Sbjct: 235 AHAMIESMVDKGVTPDVITYSVLVDAF 261
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN LV LCK + + ++ M G+ P+++TY++L+D C + EA+
Sbjct: 214 PNVITYNALVNGLCKADKMERAHAMIESM-VDKGVTPDVITYSVLVDAFCKASRVDEALE 272
Query: 68 LVSALSDSGFKPDCFV-----YNTIMKG 90
L+ ++ G P+ V +N ++ G
Sbjct: 273 LLHGMASRGCTPNVLVPDKVTFNILIAG 300
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN ++ LCK L +++ G P++VTY LID++C +L EA R
Sbjct: 35 PTIVTYNTIINGLCKSNDLGAGMELFEEL-VERGHHPDVVTYNTLIDSLCKAGDLEEARR 93
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +S G P+ Y+ ++ G
Sbjct: 94 LHGDMSSRGCVPNVVTYSVLING 116
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK L M +S G PN+VTY++LI+ +C + EA
Sbjct: 70 PDVVTYNTLIDSLCKAGDLEEARRLHGDM-SSRGCVPNVVTYSVLINGLCKVGRIDEARE 128
Query: 68 LVSALSDSGFK--PDCFVYNTIMKG 90
L+ ++ P+ YN+ + G
Sbjct: 129 LIQEMTRKSCDVLPNIITYNSFLDG 153
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TY+ L+ LCK + + +M R S + PN++TY +D +C EA
Sbjct: 105 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 164
Query: 67 RLVSALSDSGFK--PDCFVYNTIMKG 90
L+ +L D + PD ++T++ G
Sbjct: 165 ELMRSLRDGSLRVSPDTVTFSTLIDG 190
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-ASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+I TYN + LCK + +R SL + P+ VT++ LID +C + EA
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 201
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + G+ P+ YN ++ G
Sbjct: 202 SVFDDMIAGGYVPNVITYNALVNG 225
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN +++ LC+ A G+ P +VTY +I+ +C + +L M L L
Sbjct: 4 YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63
Query: 73 SDSGFKPDCFVYNTIM 88
+ G PD YNT++
Sbjct: 64 VERGHHPDVVTYNTLI 79
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY LV LC+ V +++ S G P+ VTY IL+D + + +A+
Sbjct: 394 PDSITYGSLVYALCRASRTDDALQLVSELK-SFGWDPDTVTYNILVDGLWKSGKTEQAIT 452
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G +PD F + G
Sbjct: 453 VLEEMVGKGHQPDSFTFAACFSG 475
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL-----VTYTILIDN 55
++ K + PD+ TY+ LV CK + + M AS G PN+ VT+ ILI
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM-ASRGCTPNVLVPDKVTFNILIAG 300
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C N +A L + +PD + ++ G
Sbjct: 301 ACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDG 335
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD T+N L+ CK + ++M A ++P+++T+ LID +C + A
Sbjct: 287 LVPDKVTFNILIAGACKAGNFEQASALFEEMVAK-NLQPDVMTFGALIDGLCKAGQVEAA 345
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + + G P+ YN ++ G
Sbjct: 346 RDILDLMGNLGVPPNVVTYNALVHG 370
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ L K + L + ++M+ GI PNL TY LI ++ EA
Sbjct: 1040 LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEA 1098
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ L G+KP+ F YN +++GY
Sbjct: 1099 GKMYEELLTKGWKPNVFTYNALIRGY 1124
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDI +Y ++ LCK L + Q+ +G++P+L+TY +LID + +K
Sbjct: 1000 MVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL-LEMGLEPDLITYNLLIDGLGKSK 1058
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA+ L + + G P+ + YN+++
Sbjct: 1059 RLEEAVSLFNEMQKKGIVPNLYTYNSLI 1086
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ L+ K R + TV + +M A G+KPN+ +YTI I + + EA R
Sbjct: 272 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAH-GVKPNVYSYTICIRVLGQARRFDEAYR 330
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+++ + + G KPD + +++
Sbjct: 331 ILAEMENEGCKPDVITHTVLIQ 352
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++++Y ++ L + R Y + +M G KP+++T+T+LI +C+ + +A
Sbjct: 307 PNVYSYTICIRVLGQARRFDEAYRILAEMENE-GCKPDVITHTVLIQVLCDAGRISDAKD 365
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + S KPD Y T++ +
Sbjct: 366 VFWKMKKSDQKPDRVTYITLLDKF 389
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ L + + V + +++M S PNL+TY ++D +C + +A
Sbjct: 620 LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHS-NYPPNLITYNTILDCLCKNGAVNDA 678
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ +++ G PD YNT++ G
Sbjct: 679 LDMLYSMTTKGCIPDLSSYNTVIYG 703
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 31 NFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ VDQ GI P++ +YTI+ID +C L + + L + G +PD YN ++ G
Sbjct: 999 DMVDQ-----GINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG 1053
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +V + M+A G N+V YT +ID +C + EA+
Sbjct: 377 PDRVTYITLLDKFADNGESQSVMEIWNAMKAD-GYNDNVVAYTAVIDALCQVGRVFEALE 435
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ + YN+++ G+
Sbjct: 436 MFDEMKQKGIVPEQYSYNSLISGF 459
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ + K + + ++M G + VTY +I + ++ L +A+
Sbjct: 867 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRK-GYESTYVTYNTIISGLVKSRRLEQAID 925
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L GF P Y ++ G
Sbjct: 926 LYYNLMSQGFSPTPCTYGPLLDG 948
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 12 TYNFLVKCLCKCRSLTTV----YNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
TYN ++ L K R L YN + Q G P TY L+D + + +A
Sbjct: 906 TYNTIISGLVKSRRLEQAIDLYYNLMSQ-----GFSPTPCTYGPLLDGLLKAGRIEDAEN 960
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + + G K +C +YN ++ G+
Sbjct: 961 LFNEMLEYGCKANCTIYNILLNGH 984
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L++ LC ++ + +M+ S KP+ VTY L+D + + M
Sbjct: 342 PDVITHTVLIQVLCDAGRISDAKDVFWKMKKS-DQKPDRVTYITLLDKFADNGESQSVME 400
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +A+ G+ + Y ++
Sbjct: 401 IWNAMKADGYNDNVVAYTAVI 421
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ N L+ L K + Q++ + ++P TY L+ + ++E M
Sbjct: 587 PDVLVVNSLIDTLYKAGRGDEAWQIFYQLK-EMNLEPTDGTYNTLLAGLGREGKVKEVMH 645
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + S + P+ YNTI+
Sbjct: 646 LLEEMYHSNYPPNLITYNTIL 666
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ N ++ L K L +++A +G+ P+ +TYT++I
Sbjct: 513 KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKA-MGVSPDTITYTMMIKCCSKASKFD 571
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+++ + ++ PD V N+++
Sbjct: 572 EAVKIFYDMIENNCVPDVLVVNSLI 596
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I TYN L+ LCK L+ N ++++ S GI PN +TY LID C EA
Sbjct: 766 LTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQ-SKGISPNGITYNTLIDEYCKEGKTTEA 824
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G +P Y+ ++ G
Sbjct: 825 FKLKQKMVEEGIQPTVITYSILIYG 849
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD FTY+ L+ S+ ++ D M S G+ PN++TY LI +C + L
Sbjct: 729 KRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVM-LSAGLTPNIITYNSLIYGLCKSGKLS 787
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L + L G P+ YNT++ Y
Sbjct: 788 RAVNLFNKLQSKGISPNGITYNTLIDEY 815
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ TY LVK CK + V +M+ + I + V Y ++I+ C +
Sbjct: 282 KGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMD 341
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A R+ + + D+G + FVYNT++ G
Sbjct: 342 DATRVRNEMRDAGIHVNLFVYNTMING 368
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN L+ CK T + +M GI+P ++TY+ILI +C +
Sbjct: 799 KGISPNGITYNTLIDEYCKEGKTTEAFKLKQKM-VEEGIQPTVITYSILIYGLCTQGYME 857
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++L+ + ++ P+ Y T++ GY
Sbjct: 858 EAIKLLDQMIENNVDPNYITYCTLIHGY 885
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++F YN ++ LCK + V + +M +G++P+ +Y LID C ++R+A +
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEME-DVGMRPDKYSYNTLIDGYCREGSMRKAFEM 416
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ +G YNT++KG+
Sbjct: 417 CRMMVRNGLAATTLTYNTLLKGF 439
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y ++ C+ + ++MR + GI NL Y +I+ +C + E ++
Sbjct: 323 DEVAYGMMINGYCQRGRMDDATRVRNEMRDA-GIHVNLFVYNTMINGLCKLGRMEEVQKV 381
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D G +PD + YNT++ GY
Sbjct: 382 LQEMEDVGMRPDKYSYNTLIDGY 404
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L ++ T+N ++ LCK + +D+M+ L P+ +TY L D C L
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMK-ELRCPPDSLTYRTLFDGYCKLGQLG 551
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L++ + GF P ++N+ + G+
Sbjct: 552 TATHLMNKMEHLGFAPSVEMFNSFITGH 579
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 34/119 (28%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR----------------------------- 37
PPD TY L CK L T + +++M
Sbjct: 531 PPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVND 590
Query: 38 -----ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ G+ PNLVTY LI C NL EA L + ++G P+ F+ + +M +
Sbjct: 591 IHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCF 649
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TY+ L+ LC + +DQM + + PN +TY LI +
Sbjct: 831 MVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIEN-NVDPNYITYCTLIHGYIKSG 889
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
N+ E +L + G P ++ N
Sbjct: 890 NMEEISKLYDEMHIRGLLPTNWIGN 914
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++YN L+ C+ S+ + +M G+ +TY L+ C+ + +A+R
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMC-RMMVRNGLAATTLTYNTLLKGFCSLHAIDDALR 450
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P+ +T++ G
Sbjct: 451 LWFLMLKRGVAPNEISCSTLLDG 473
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI+T++ L+K C L ++MR G+KP++VTYT +I +C + +A
Sbjct: 394 IAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDH-GVKPDVVTYTTVIAALCRIGKMDDA 452
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + D G PD + Y+ +++G+
Sbjct: 453 MEKFNQMIDQGVAPDKYAYHCLIQGF 478
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD+ TY+ +V LCK R++ F+ QM + G+ P+ TY LI +T
Sbjct: 249 MVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQM-VNKGVLPDNWTYNNLIYGYSSTG 307
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+R+ + PD N +M
Sbjct: 308 QWKEAVRVFKEMRRHSILPDVVTLNMLM 335
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI ++ ++ LCK + N D + ++G P+ V Y++L+D C + +A+R+
Sbjct: 502 DIVFFSSIINNLCKLGRIMDAQNIFD-LTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRV 560
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
A+ +G +P+ VY T++ GY
Sbjct: 561 FDAMVSAGIEPNVVVYGTLVNGY 583
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y+ L+ C + D M S GI+PN+V Y L++ C + E +
Sbjct: 536 PDAVVYSMLMDGYCLVGKMEKALRVFDAM-VSAGIEPNVVVYGTLVNGYCKIGRIDEGLS 594
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G KP +YN I+ G
Sbjct: 595 LFREMLQKGIKPSTILYNIIIDG 617
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ C K + + +M GI P+LVTY+ ++ +C + + +A
Sbjct: 221 PDVVAYTTVIDCFFKEGDVNKACDLFKEM-VQRGIPPDLVTYSSVVHALCKARAMGKAEA 279
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G PD + YN ++ GY
Sbjct: 280 FLRQMVNKGVLPDNWTYNNLIYGY 303
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K PD+F+Y ++ L + + D M GI P++ T+++LI N
Sbjct: 354 MAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDIYTFSVLIKAYANCG 412
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +AM + + + D G KPD Y T++
Sbjct: 413 MLDKAMIIFNEMRDHGVKPDVVTYTTVI 440
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD + Y+ L++ C SL + ++ + G++ ++V ++ +I+N+C
Sbjct: 459 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNN-GMRLDIVFFSSIINNLCKLG 517
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + G PD VY+ +M GY
Sbjct: 518 RIMDAQNIFDLTVNVGQHPDAVVYSMLMDGY 548
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ T N L+ LCK + + D M A G P++ +Y I+++
Sbjct: 315 VFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTM-AMKGQNPDVFSYKIMLNGY 373
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + L + G PD + ++ ++K Y
Sbjct: 374 ATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAY 408
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L DI N L+K C+ + + + LG P++ +Y+IL+ ++C+
Sbjct: 141 LLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 200
Query: 61 NLREAMRLVSALSDSGF--KPDCFVYNTIM 88
+A L+ +++ G PD Y T++
Sbjct: 201 KSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI-KPNLVTYTILIDNVCNTKNLREAM 66
PD+F+Y+ L+K LC + + M + P++V YT +ID ++ +A
Sbjct: 184 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKAC 243
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD Y++++
Sbjct: 244 DLFKEMVQRGIPPDLVTYSSVVHA 267
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ Y LV CK + + +M GIKP+ + Y I+ID +
Sbjct: 564 MVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQK-GIKPSTILYNIIIDGLFVAG 622
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +++SG + YN +++G+
Sbjct: 623 RTVPAKVKFHEMTESGIAINKCTYNIVLRGF 653
>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD FTY+ + C + + + +D+MR + PN+ TY +I +C +
Sbjct: 277 MLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMR-RYNLLPNVFTYNCIIKQLCKNE 335
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
++ EA +L+ + G KPD + YN I
Sbjct: 336 HVEEAYQLLDEMISRGVKPDTWSYNAI 362
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++FTYN ++K LCK + Y +D+M S G+KP+ +Y + C+ + A
Sbjct: 317 LLPNVFTYNCIIKQLCKNEHVEEAYQLLDEM-ISRGVKPDTWSYNAIQAYHCDHCEVNRA 375
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+RL+ + PD YN ++K
Sbjct: 376 LRLMFRMEKDICLPDRHTYNMVLK 399
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ YN L++ LCK + N M S ++P+ TY+I I + C+ +++ A
Sbjct: 248 PVDLLAYNNLLQALCKGGRVDEAKNIFHDM-LSKRVEPDAFTYSIFIHSYCDADDVQSAF 306
Query: 67 RLVSALSDSGFKPDCFVYNTIMK 89
R++ + P+ F YN I+K
Sbjct: 307 RVLDKMRRYNLLPNVFTYNCIIK 329
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD TYN L++ LC + +D+M GI+P+LVTY LI +++
Sbjct: 760 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TERGIQPDLVTYNTLISGYSMKGDVK 818
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + + + GF P YN +++G
Sbjct: 819 DALRIRNEMMNKGFNPTLLTYNALIQG 845
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ +Q+P P+ TYN ++ C + + + +MR GI PN TY +I C
Sbjct: 510 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 569
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIMKGY 91
+ EA+++ + G KP+ +YN ++ GY
Sbjct: 570 RVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 601
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTYN L+ CK ++ + M + G++ +VTYT LI + ++
Sbjct: 655 KGLAPDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTALIYALSKKGQVQ 713
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E +L G +PD +YN ++ +
Sbjct: 714 ETDKLFDEAVRRGIRPDLVLYNALINSH 741
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ ++ + + +M I P+ VTY L+ +C + EA +
Sbjct: 729 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR-IAPDDVTYNTLMRGLCLLGRVDEARK 787
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +++ G +PD YNT++ GY
Sbjct: 788 LIDEMTERGIQPDLVTYNTLISGY 811
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN LV L T Y V++M G+ P++ TY ILI+ C N+++A+ +
Sbjct: 626 VATYNLLVHALFMDGRGTEAYELVEEMGGK-GLAPDVFTYNILINGHCKEGNVKKALEIF 684
Query: 70 SALSDSGFKPDCFVYNTIM 88
+S G + Y ++
Sbjct: 685 ENMSRRGVRATVVTYTALI 703
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ YN L+ C L T + D+M G+ + TY +L+ + E
Sbjct: 586 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRM-VERGVAMTVATYNLLVHALFMDGRGTE 644
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A LV + G PD F YN ++ G+
Sbjct: 645 AYELVEEMGGKGLAPDVFTYNILINGH 671
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ + ++M + G P L+TY LI +C
Sbjct: 795 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM-MNKGFNPTLLTYNALIQGLCKNGQGD 853
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +V + ++G PD Y ++++G
Sbjct: 854 DAENMVKEMVENGITPDDSTYISLIEG 880
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN LV C+ + V MR G++P+LVT+ +++ +C + +A +
Sbjct: 188 PNVVTYNTLVAAFCRAGEVDAAERLVGVMREG-GVRPSLVTFNTVVNGLCKAGRMEDARK 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G PD YNT++ GY
Sbjct: 247 MFDEMAREGLTPDGVSYNTLVSGY 270
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+++TYN LV+ LC V D MR + G PN+VTY L+ C + A
Sbjct: 152 PNVYTYNILVRALCARGQREEALGVVGDDMRGA-GCAPNVVTYNTLVAAFCRAGEVDAAE 210
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RLV + + G +P +NT++ G
Sbjct: 211 RLVGVMREGGVRPSLVTFNTVVNG 234
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ LC+ R L ++M LG++P+ TYT LID C
Sbjct: 426 MLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKM-LQLGLQPDEFTYTTLIDGHCKEG 484
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+++A+ L + G PD Y+ ++ G
Sbjct: 485 NVQKALSLHDEMIKKGVLPDVVTYSVLIDG 514
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ T+ L+ +C+ +L V QMR G++ N T+T LID C L
Sbjct: 289 KGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRER-GLRMNEFTFTALIDGFCRNGFLD 347
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ + + + +P YN ++ GY
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLINGY 375
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TY+ ++ CK + + +M G+ P+ +TY+ LI +C + L
Sbjct: 394 KGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKK-GVVPDAITYSSLIRGLCEERRLG 452
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + G +PD F Y T++ G+
Sbjct: 453 DACELFEKMLQLGLQPDEFTYTTLIDGH 480
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +YN LV CK L +M A G+ P++VT+T LI +C NL A
Sbjct: 256 LTPDGVSYNTLVSGYCKAGCLHEALAVFAEM-AQKGVVPDVVTFTSLIHAMCRAGNLERA 314
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ LV + + G + + F + ++ G+
Sbjct: 315 VALVGQMRERGLRMNEFTFTALIDGF 340
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FT+ L+ C+ L + +MR I+P++V Y +LI+ C + EA L+
Sbjct: 331 FTFTALIDGFCRNGFLDDALLAMKEMR-ECRIQPSVVCYNVLINGYCKLGRMDEARELIH 389
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ G KPD Y+TI+ GY
Sbjct: 390 EMEAKGMKPDVVTYSTILSGY 410
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + YN L+ CK + + +M A G+KP++VTY+ ++ C +
Sbjct: 360 RIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAK-GMKPDVVTYSTILSGYCKIGDTDS 418
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + G PD Y+++++G
Sbjct: 419 AFELNRKMLKKGVVPDAITYSSLIRG 444
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ CK ++ + D+M G+ P++VTY++LID + + +EA
Sbjct: 466 LQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKK-GVLPDVVTYSVLIDGLSKSARTKEA 524
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
RL+ L PD Y +M
Sbjct: 525 QRLLFKLYYEDPVPDNIKYEALM 547
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N +V LCK + D+M A G+ P+ V+Y L+ C L EA+
Sbjct: 223 PSLVTFNTVVNGLCKAGRMEDARKMFDEM-AREGLTPDGVSYNTLVSGYCKAGCLHEALA 281
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + ++ G PD + +++
Sbjct: 282 VFAEMAQKGVVPDVVTFTSLI 302
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ L SL + + M G+ PN+ TY IL+ +C EA+
Sbjct: 118 PSLLAYNAVLLALSDA-SLPSARRLLASMLRD-GVAPNVYTYNILVRALCARGQREEALG 175
Query: 68 LV-SALSDSGFKPDCFVYNTIMKGY 91
+V + +G P+ YNT++ +
Sbjct: 176 VVGDDMRGAGCAPNVVTYNTLVAAF 200
>gi|297805650|ref|XP_002870709.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316545|gb|EFH46968.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 608
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV C+ L + ++ ++ + P+LVTYT LI +C +REA +
Sbjct: 267 PDLVTYNTLVSSYCRRGRLKEAF-YLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQ 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ D G KPDC YNT++ Y
Sbjct: 326 TFHRMVDRGIKPDCMSYNTLIYAY 349
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +T+N L C + V +F+++M G +P+LVTY L+ + C L+EA
Sbjct: 232 PNTYTFNILTNVFCNNSNYGEVDDFLEKMEEE-GFEPDLVTYNTLVSSYCRRGRLKEAFY 290
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + PD Y +++KG
Sbjct: 291 LYKIMYRRRVVPDLVTYTSLIKG 313
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TY L+K LCK + + +M GIKP+ ++Y LI C ++
Sbjct: 298 RRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRM-VDRGIKPDCMSYNTLIYAYCKEGMMQ 356
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +L+ + + PD F I++G+
Sbjct: 357 QSKKLLHEMLGNSVVPDRFTCKVIVEGF 384
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+GI PN T+ IL + CN N E + + + GF+PD YNT++ Y
Sbjct: 228 VGIHPNTYTFNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNTLVSSY 279
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L++ LC C ++ +++ + ++ TY LI +C REA L++
Sbjct: 447 TYNNLIESLCCCDAIEEALVLKGKLKNQNQVL-DVKTYRALIGCLCRIGRNREAESLMAE 505
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ DS KPD + ++ Y
Sbjct: 506 MLDSEVKPDSIICGALVNRY 525
>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FT N L+K LCK + + +D+M A +G+ PN+VTYT ++ + ++ A +
Sbjct: 199 PNVFTCNILIKALCKKNDVESAVKVLDEMPA-MGMIPNVVTYTTILGGYSSRGDMVNANK 257
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L D G+ PD Y +M GY
Sbjct: 258 VFGELFDRGWLPDATTYTILMNGY 281
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + L+ LCK + + G P+L+TY LI +C L EA +
Sbjct: 374 PDNAIMSTLIHWLCKEGKVWEARKLFGEFER--GAIPSLLTYNTLIAGMCEKGELSEAGK 431
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G+KP+ F YN ++KG+
Sbjct: 432 LWDDMMEKGYKPNAFTYNMLIKGF 455
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ +C+ L+ D M G KPN TY +LI N +E +R
Sbjct: 408 PSLLTYNTLIAGMCEKGELSEAGKLWDDMMEK-GYKPNAFTYNMLIKGFSKIGNAKEGIR 466
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + D+ P+ Y +++
Sbjct: 467 ILEEMLDNRCMPNKSTYAILIE 488
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ C+ L +D M + G++PN VTY ++++ C K EA
Sbjct: 269 PDATTYTILMNGYCEQGRLADAIKLMDDMGEN-GVEPNEVTYGVMVEAYCKEKKAGEARN 327
Query: 68 LVSALSDSGFKP 79
L+ + + + P
Sbjct: 328 LLDDMLERQYVP 339
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ + N L+ + + V+ R+ G+ PN+ T ILI +C ++ A++++
Sbjct: 165 VRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVL 224
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y TI+ GY
Sbjct: 225 DEMPAMGMIPNVVTYTTILGGY 246
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ FTYN L+K K + +++M + + PN TY ILI+ +C
Sbjct: 436 MMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCM-PNKSTYAILIEELCKMG 494
Query: 61 NLREAMRLVS-ALSDSGFKPDCF 82
E ++VS A++ G D +
Sbjct: 495 MEGEVDKVVSMAMASGGVDSDSW 517
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ +C+ + VDQM+ + + PNL+TY LI C+ NL +A L
Sbjct: 301 NVVTYNTLIGGMCREERVWEAEKLVDQMKKA-AVSPNLITYNTLIGGFCDVGNLDKASSL 359
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ L +G P YN +++GY
Sbjct: 360 LDQLKSNGLSPSLVTYNILIEGY 382
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+++TYN L+ C + ++ D+MR G++ N+VTY LI +C + + EA
Sbjct: 263 LFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRER-GVEANVVTYNTLIGGMCREERVWEA 321
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+LV + + P+ YNT++ G+
Sbjct: 322 EKLVDQMKKAAVSPNLITYNTLIGGF 347
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TYN L++ K + V + +M GI P+ VT T+LID + + +A
Sbjct: 368 LSPSLVTYNILIEGYSKAGNWKGVADLAREMEGR-GISPSKVTCTVLIDAYVRLQEMEKA 426
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ S++ G PD +VY ++ G
Sbjct: 427 FQIYSSMEKFGLVPDVYVYGVLIHG 451
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C +L + +DQ++++ G+ P+LVTY ILI+ N +
Sbjct: 335 PNLITYNTLIGGFCDVGNLDKASSLLDQLKSN-GLSPSLVTYNILIEGYSKAGNWKGVAD 393
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G P ++ Y
Sbjct: 394 LAREMEGRGISPSKVTCTVLIDAY 417
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P T L+ + + + + M G+ P++ Y +LI +C N++
Sbjct: 401 RGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSME-KFGLVPDVYVYGVLIHGLCMKGNMK 459
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E+ +L ++ + +P +YNT++ GY
Sbjct: 460 ESSKLFRSMGEMHVEPSDVIYNTMIHGY 487
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++++ ++K C+ +L + + ++ +G+ PN+V YT LID C ++ A
Sbjct: 161 DVYSFGIMIKGCCENGNLDKSFQLLGLLQ-DMGLSPNVVIYTTLIDGCCKNGDIERARLF 219
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G + + + ++ G
Sbjct: 220 FDKMGEMGLVANQYTFTVLING 241
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+F+ P+IF N L+ L + + F ++++ +K ++ ++ I+I C
Sbjct: 124 LVFR---PNIF--NSLLGSLVRSNCFEKAWLFFNELKER--VKFDVYSFGIMIKGCCENG 176
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL ++ +L+ L D G P+ +Y T++ G
Sbjct: 177 NLDKSFQLLGLLQDMGLSPNVVIYTTLIDG 206
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y L+ CK + F D+M +G+ N T+T+LI+ + ++
Sbjct: 193 LSPNVVIYTTLIDGCCKNGDIERARLFFDKM-GEMGLVANQYTFTVLINGLFKKGLKKDG 251
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G P+ + YN +M Y
Sbjct: 252 FDLFEKMKINGLFPNLYTYNCLMNEY 277
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++ Y L+ LC ++ M + ++P+ V Y +I C N A
Sbjct: 438 LVPDVYVYGVLIHGLCMKGNMKESSKLFRSM-GEMHVEPSDVIYNTMIHGYCKEDNSYRA 496
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+RL+ + G P+ Y++I+
Sbjct: 497 LRLLREMEAKGLVPNVASYSSII 519
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T+ L+ L K ++ ++M+ + G+ PNL TY L++ C + A L
Sbjct: 233 YTFTVLINGLFKKGLKKDGFDLFEKMKIN-GLFPNLYTYNCLMNEYCGEGKICRAFDLFD 291
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G + + YNT++ G
Sbjct: 292 EMRERGVEANVVTYNTLIGG 311
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ YN ++ CK + + +M A G+ PN+ +Y+ +I +C EA
Sbjct: 475 PSDVI-YNTMIHGYCKEDNSYRALRLLREMEAK-GLVPNVASYSSIIGVLCKDGKWEEAE 532
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + + KP + N I K
Sbjct: 533 VLLDKMIELQLKPSASILNMISKA 556
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD TYN L++ LC + +D+M GI+P+LVTY LI +++
Sbjct: 426 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TKRGIQPDLVTYNTLISGYSMKGDVK 484
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + + + GF P YN +++G
Sbjct: 485 DALRIRNEMMNKGFNPTLLTYNALIQG 511
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ +Q+P P+ TYN ++ C + + + +MR GI PN TY +I C
Sbjct: 176 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 235
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIMKGY 91
+ EA+++ + G KP+ +YN ++ GY
Sbjct: 236 RVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 267
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ ++ + + +M I P+ VTY L+ +C + EA +
Sbjct: 395 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR-IAPDDVTYNTLMRGLCLLGRVDEARK 453
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +PD YNT++ GY
Sbjct: 454 LIDEMTKRGIQPDLVTYNTLISGY 477
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D+FTYN L+ CK ++ + M + G++ +VTYT LI + ++
Sbjct: 321 KGLALDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTSLIYALSKKGQVQ 379
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E +L G +PD +YN ++ +
Sbjct: 380 ETDKLFDEAVRRGIRPDLVLYNALINSH 407
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ + ++M + G P L+TY LI +C
Sbjct: 461 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM-MNKGFNPTLLTYNALIQGLCKNGQGD 519
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +V + ++G PD Y ++++G
Sbjct: 520 DAENMVKEMVENGITPDDSTYISLIEG 546
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ YN L+ C L T + D+M G+ + TY +L+ + E
Sbjct: 252 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRM-VERGVAMTVATYNLLVHALFMDGRGTE 310
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A LV + G D F YN ++ G+
Sbjct: 311 AYELVEEMGGKGLALDVFTYNILINGH 337
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ +TY ++ CK + D+M +KP V Y LI C+ L A
Sbjct: 217 IAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA 276
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + + G YN ++
Sbjct: 277 LLYRDRMVERGVAMTVATYNLLV 299
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TY+ ++ LC+C + + +++M S G KP++VTYT+L+ +C + EA
Sbjct: 260 APDVVTYSTIIDGLCRCGDVDKGFALLEKM-VSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RLV + + G P+ Y+ + G
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDG 342
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ CK + Y F+++M+ G P+ TY+ILI+ +C + NLR+A
Sbjct: 154 PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADE 213
Query: 68 LVSALSDSGFKPDC----FVYNTIMKGY 91
L+ + + DC +NT++ GY
Sbjct: 214 LLQEMIG---RKDCCASVVAFNTLVDGY 238
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ L+ LCK +L + +M ++V + L+D C ++L A
Sbjct: 190 PDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARE 249
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+S++ + G PD Y+TI+ G
Sbjct: 250 LLSSMLEHGCAPDVVTYSTIIDG 272
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P YNF V LCK + V M+ KP++VT+ LI +C L EA
Sbjct: 50 MAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDG-ACKPDVVTFNTLIAGLCKAGRLDEA 108
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + SGF + YNT++ G
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLING 133
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ LCK L +D+M S G NLVTY LI+ + + EA+
Sbjct: 87 PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERS-GFAANLVTYNTLINGLSSAGRSGEAVL 145
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ ++ + PD YN I+ G+
Sbjct: 146 VMQGMTTT---PDTQTYNAIIHGF 166
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ TY LV LCK + V +M G PN VTY+++ D +C
Sbjct: 289 MVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLED-GCTPNAVTYSLVFDGLCKID 347
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A L++++ D G D + T++
Sbjct: 348 KLDMANDLLTSIRDKGRVTDVVAFETLL 375
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +TY LV+ C L + + +M G+ P Y + +C + + EAM +
Sbjct: 17 DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + D KPD +NT++ G
Sbjct: 77 VKNMKDGACKPDVVTFNTLIAG 98
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ +N LV CK + L + M G P++VTY+ +ID +C ++ + L+
Sbjct: 228 VVAFNTLVDGYCKAQDLDRARELLSSMLEH-GCAPDVVTYSTIIDGLCRCGDVDKGFALL 286
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G KPD Y ++ G
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTG 307
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ L K + Y V +M G KPN++TY++L++ +C K L A+
Sbjct: 497 PTVVTYNTLINGLSKAERFSEAYALVKEMLHK-GWKPNMITYSLLMNGLCQGKKLDMALN 555
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + GFKPD ++N I+ G
Sbjct: 556 LWCQALEKGFKPDVKMHNIIIHG 578
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I +YN ++ LCKC + +M+ + + +L TY+ LI +C + NL A R
Sbjct: 253 PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ-DLYTYSTLIHGLCGSGNLDGATR 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++++G PD VYNT++ GY
Sbjct: 312 VYKEMAENGVSPDVVVYNTMLNGY 335
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +YN L+ L + +F ++G+ PNL TY ILI C K +A
Sbjct: 112 PGIRSYNSLLNALIESNKWDEAESFFLYFE-TMGLSPNLQTYNILIKISCRKKQFDKAKE 170
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + + GF PD F Y T++
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLI 191
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ TY+ L+ LC+ + L N Q G KP++ + I+I +C++
Sbjct: 525 MLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK-GFKPDVKMHNIIIHGLCSSG 583
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A++L S + P+ +NT+M+G+
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TYN L+K C+ + ++ M G P++ +Y LI+++ + +A
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ-GFSPDVFSYGTLINSLAKNGYMSDA 203
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L + + G PD YN ++ G+
Sbjct: 204 LKLFDEMPERGVTPDVACYNILIDGF 229
Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F Y+ ++ LC+ L V +DQM G KPN +I+ L +A+R
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKH-GCKPNPHVCNAVINGFVRASKLEDALRF 486
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G P YNT++ G
Sbjct: 487 FGNMVSKGCFPTVVTYNTLING 508
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD TYN L++ LC + +D+M GI+P+LVTY LI +++
Sbjct: 313 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TKRGIQPDLVTYNTLISGYSMKGDVK 371
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + + + GF P YN +++G
Sbjct: 372 DALRIRNEMMNKGFNPTLLTYNALIQG 398
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ +Q+P P+ TYN ++ C + + + +MR GI PN TY +I C
Sbjct: 63 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 122
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIMKGY 91
+ EA+++ + G KP+ +YN ++ GY
Sbjct: 123 RVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 154
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTYN L+ CK ++ + M + G++ +VTYT LI + ++
Sbjct: 208 KGLAPDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTSLIYALSKKGQVQ 266
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E +L G +PD +YN ++ +
Sbjct: 267 ETDKLFDEAVRRGIRPDLVLYNALINSH 294
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ ++ + + +M I P+ VTY L+ +C + EA +
Sbjct: 282 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR-IAPDDVTYNTLMRGLCLLGRVDEARK 340
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +PD YNT++ GY
Sbjct: 341 LIDEMTKRGIQPDLVTYNTLISGY 364
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN LV L T Y V++M G+ P++ TY ILI+ C N+++A+ +
Sbjct: 179 VATYNLLVHALFMDGRGTEAYELVEEMGGK-GLAPDVFTYNILINGHCKEGNVKKALEIF 237
Query: 70 SALSDSGFKPDCFVYNTIM 88
+S G + Y +++
Sbjct: 238 ENMSRRGVRATVVTYTSLI 256
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ YN L+ C L T + D+M G+ + TY +L+ + E
Sbjct: 139 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRM-VERGVAMTVATYNLLVHALFMDGRGTE 197
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A LV + G PD F YN ++ G+
Sbjct: 198 AYELVEEMGGKGLAPDVFTYNILINGH 224
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ TYN L+ + ++M + G P L+TY LI +C
Sbjct: 348 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM-MNKGFNPTLLTYNALIQGLCKNGQGD 406
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +V + ++G PD Y ++++G
Sbjct: 407 DAENMVKEMVENGITPDDSTYISLIEG 433
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P+ TYN L+ CK L +N ++M+ ++P ++T+ L++ +C +
Sbjct: 243 MLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVE-NVEPTIITFNSLLNGLCRAQ 301
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA R++ + GF PD F Y T+ G+
Sbjct: 302 MMEEAQRVLEEMEVYGFVPDRFTYTTLFDGH 332
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P +F +N +V C+ + Y +++M A +G++PN VTY L+ C KN+ EA
Sbjct: 390 PVGVF-FNTIVNGYCQVGDINKAYTTIEKMEA-VGLRPNHVTYNSLVKKFCEMKNMEEAE 447
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + G P+ YNT++ GY
Sbjct: 448 KCIKKMVEKGVLPNVETYNTLIDGY 472
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+ YN L+ C L + F D+M A I P LVTY ILI+ +C
Sbjct: 523 MVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAR-EIVPTLVTYNILINGLCKKG 581
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L S ++ G D YN+++ GY
Sbjct: 582 KVMEAENLASEITRKGLSFDVITYNSLISGY 612
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P + TYN L+ LCK + N ++ G+ +++TY LI +
Sbjct: 558 MVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRK-GLSFDVITYNSLISGYSSAG 616
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+++A+ L + SG KP Y+ ++ G
Sbjct: 617 NVQKALELYETMKKSGIKPTLNTYHRLIAG 646
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD F Y ++ K L + M+ G+ P + Y ++I +C K
Sbjct: 173 IVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRG-GVSPGVFVYNVVIGGLCKEK 231
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A +L + D P+ YNT++ GY
Sbjct: 232 RMKDAEKLFDEMLDRRVAPNRITYNTLIDGY 262
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TYN L+ + + +++M G+KPN+++Y LI+ +C
Sbjct: 453 MVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKK-GLKPNVISYGCLINCLCKDA 511
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ EA ++ + G P+ +YN ++ G
Sbjct: 512 NILEAEVILGDMVHRGVVPNAQIYNMLIDG 541
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN LVK C+ +++ + +M G+ PN+ TY LID +
Sbjct: 423 LRPNHVTYNSLVKKFCEMKNMEEAEKCIKKM-VEKGVLPNVETYNTLIDGYGRSCLFDRC 481
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+++ + G KP+ Y ++
Sbjct: 482 FQILEEMEKKGLKPNVISYGCLI 504
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD TYN L+ K + V N V+ M+ G+ P TY ILI C K+
Sbjct: 700 QGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIR-GLIPKTETYDILIVGHCKLKDFD 758
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + ++GF P + + ++ G
Sbjct: 759 GAYVWYREMFENGFTPSVSICDNLITG 785
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY L KC ++ ++ G++ T +IL++ +C N+ +A
Sbjct: 320 PDRFTYTTLFDGHLKCGNVDASITLSEEA-VRKGVQILDYTCSILLNALCKEGNMEKAEE 378
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ ++G P +NTI+ GY
Sbjct: 379 VLKKFLENGLAPVGVFFNTIVNGY 402
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 31/50 (62%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G+ P++ + + ++++ +TK + ++L S + +SG +PD F+Y ++
Sbjct: 142 GVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQA 191
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + TY+ L+ C L V +M + + P+ V Y LI ++++A
Sbjct: 633 IKPTLNTYHRLIAG-CGKEGLVLVEKIYQEM-LQMNLVPDRVIYNALIHCYVEHGDVQKA 690
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L SA+ G +PD YN ++ G+
Sbjct: 691 CSLHSAMEAQGIQPDKMTYNCLILGH 716
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK L + + +M +G++PN+ TY +++ +C + N+ EA++
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEM-WKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV +G D Y T+M Y
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAY 536
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD T+ L+ CK + + + M G PN+VTYT LID +C +L
Sbjct: 415 KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGLCKEGDLD 473
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + G +P+ F YN+I+ G
Sbjct: 474 SANELLHEMWKIGLQPNIFTYNSIVNG 500
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+IFTYN +V LCK ++ V + A+ G+ + VTYT L+D C + + +A
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCKSGEMDKA 545
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G +P +N +M G+
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGF 571
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P+ + Y ++ LC+ C+ F + +R GI P+ V YT LID C ++
Sbjct: 310 KGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--GILPDTVVYTTLIDGFCKRGDI 367
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
R A + + PD Y I+ G+
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGF 396
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD Y L+ CK + F +M S I P+++TYT +I C
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH-SRDITPDVLTYTAIISGFCQIG 400
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ EA +L + G +PD + ++ GY
Sbjct: 401 DMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ T+N LVK C +L M S G+ P+ TY L+ C +
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM-CSRGVGPDGKTYENLVKGHCKAR 645
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++EA L + GF Y+ ++KG+
Sbjct: 646 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/93 (18%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 1 LIFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++F++ P ++ +YN ++ +C+ + ++ + M G P++++Y+ +++
Sbjct: 232 IVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK-GYTPDVISYSTVVNG 290
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C L + +L+ + G KP+ ++Y +I+
Sbjct: 291 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSII 323
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD TY LVK CK R++ + +M+ G ++ TY++LI K
Sbjct: 625 RGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK-GFSVSVSTYSVLIKGFLKRKKFL 683
Query: 64 EAMRLVSALSDSGFKPDCFVYN 85
EA + + G D +++
Sbjct: 684 EAREVFDQMRREGLAADKEIFD 705
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+G+ N+ +Y I+I VC ++EA L+ + G+ PD Y+T++ GY
Sbjct: 239 EVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 291
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN L+ LCK ++ VD+M G+ + +TY ++D +C +
Sbjct: 365 KNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDR-GVPHDKITYNSILDALCKNHQVD 423
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ + D G +PD + Y ++ G
Sbjct: 424 KAIALLTKMKDEGIQPDMYTYTILIDG 450
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY+ L+ C L ++M S I P++ T++IL+D C
Sbjct: 222 MVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKM-ISEEINPDVYTFSILVDGFCKEG 280
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + G KPD Y ++M GY
Sbjct: 281 RVKEAKNVLAMMMKQGIKPDVVTYCSLMDGY 311
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +P D TYN ++ LCK + + +M+ GI+P++ TYTILID +C L+
Sbjct: 400 RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDE-GIQPDMYTYTILIDGLCKGGRLK 458
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + L G+ + Y +++G+
Sbjct: 459 DAQNIFEDLLVKGYNITVYTYTVMIQGF 486
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ PD++T++ LV CK + N + M GIKP++VTY L+D C K
Sbjct: 257 MISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQ-GIKPDVVTYCSLMDGYCLVK 315
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + ++ G + YN ++ G+
Sbjct: 316 QVNKAKSIFNTMAQGGVTANVQSYNIMINGF 346
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ +YN ++ CK + + N +M I P++VTY LID +C + + A++L
Sbjct: 335 NVQSYNIMINGFCKIKKVDEAMNLFKEMHCK-NIIPDVVTYNSLIDGLCKSGKISYALKL 393
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V + D G D YN+I+
Sbjct: 394 VDEMHDRGVPHDKITYNSIL 413
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ YN ++ +CK + + ++ +M S GI P++VTY+ LI C L
Sbjct: 190 KLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM-VSKGISPDVVTYSALISGFCILGKLN 248
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L + + PD + ++ ++ G+
Sbjct: 249 DAIGLFNKMISEEINPDVYTFSILVDGF 276
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y L+ LCK + + ++ L ++PN+V Y +ID++C K + EA L S +
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRVDGKL-VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 222
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G PD Y+ ++ G+
Sbjct: 223 VSKGISPDVVTYSALISGF 241
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++TY L+ LCK L N + + G + TYT++I C+
Sbjct: 435 EGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVK-GYNITVYTYTVMIQGFCDNDLFD 493
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ L+S + D+G P+ Y I+
Sbjct: 494 KALALLSKMEDNGCIPNAKTYEIII 518
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ KQ + PD+ TY L+ C + + + + M A G+ N+ +Y I+I+ C
Sbjct: 291 MMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTM-AQGGVTANVQSYNIMINGFCKI 349
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K + EAM L + PD YN+++ G
Sbjct: 350 KKVDEAMNLFKEMHCKNIIPDVVTYNSLIDG 380
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
F + D+ T+N L+ C + ++ F + ++ G +PN +T T LI +C
Sbjct: 84 FNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKK--GYEPNAITLTTLIKGLCLKGQ 141
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + GF + Y T++ G
Sbjct: 142 IHQALHFHDKVVALGFHLNKVCYGTLING 170
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVTY I+I +N + A
Sbjct: 481 LSPDTFTYSVIINCLGKAGHLAAAHKLFCEM-VEQGCVPNLVTYNIMIALQAKARNYQSA 539
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + +GF+PD Y+ +M+
Sbjct: 540 LKLYRDMQSAGFQPDKVTYSIVME 563
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ + L + ++M+ +G +P+ VTY LID L A+
Sbjct: 413 PNVVTYNRLIHSYGRANYLNDAVDVFNEMQ-RVGCEPDRVTYCTLIDIHAKAGFLDFALE 471
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +G PD F Y+ I+
Sbjct: 472 MYQRMQAAGLSPDTFTYSVII 492
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ + M+ S G +P+ VTY+I+++ + + L EA
Sbjct: 518 PNLVTYNIMIALQAKARNYQSALKLYRDMQ-SAGFQPDKVTYSIVMEVLGHCGYLDEAEA 576
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ S + + PD VY ++
Sbjct: 577 VFSEMKRKNWVPDEPVYGLLV 597
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +DQM G +PN+VTY LI + L +A+ +
Sbjct: 379 DGHTYTTMVGILGRAKQFGAINKLLDQMVKD-GCQPNVVTYNRLIHSYGRANYLNDAVDV 437
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G +PD Y T++
Sbjct: 438 FNEMQRVGCEPDRVTYCTLI 457
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ K L +M+A+ G+ P+ TY+++I+ + +L A +
Sbjct: 448 PDRVTYCTLIDIHAKAGFLDFALEMYQRMQAA-GLSPDTFTYSVIINCLGKAGHLAAAHK 506
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + G P+ YN ++
Sbjct: 507 LFCEMVEQGCVPNLVTYNIMI 527
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
Length = 1080
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ L K + L + ++M+ GI PNL TY LI ++ EA
Sbjct: 961 LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEA 1019
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ L G+KP+ F YN +++GY
Sbjct: 1020 GKMYEELLTKGWKPNVFTYNALIRGY 1045
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDI +Y ++ LCK L + Q+ +G++P+L+TY +LID + +K
Sbjct: 921 MVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL-LEMGLEPDLITYNLLIDGLGKSK 979
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA+ L + + G P+ + YN+++
Sbjct: 980 RLEEAVSLFNEMQKKGIVPNLYTYNSLI 1007
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ L+ K R + TV + +M A G+KPN+ +YTI I + K EA R
Sbjct: 193 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAH-GVKPNVYSYTICIRVLGQAKRFDEAYR 251
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+++ + + G KPD + +++
Sbjct: 252 ILAKMENEGCKPDVITHTVLIQ 273
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ L + + V + +++M S PNL+TY ++D +C + +A
Sbjct: 541 LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHS-NYPPNLITYNTILDCLCKNGAVNDA 599
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ +++ G PD YNT++ G
Sbjct: 600 LDMLYSMTTKGCIPDLSSYNTVIYG 624
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++++Y ++ L + + Y + +M G KP+++T+T+LI +C+ + +A
Sbjct: 228 PNVYSYTICIRVLGQAKRFDEAYRILAKMENE-GCKPDVITHTVLIQVLCDAGRISDAKD 286
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + S KPD Y T++ +
Sbjct: 287 VFWKMKKSDQKPDRVTYITLLDKF 310
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 31 NFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ VDQ GI P++ +YTI+ID +C L + + L + G +PD YN ++ G
Sbjct: 920 DMVDQ-----GINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG 974
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ + K + + ++M G + VTY +I + ++ L +A+
Sbjct: 788 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRK-GYESTYVTYNTIISGLVKSRRLEQAID 846
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L GF P Y ++ G
Sbjct: 847 LYYNLMSQGFSPTPCTYGPLLDG 869
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +V + M+A G N+V YT +ID +C + EA+
Sbjct: 298 PDRVTYITLLDKFGDNGDSQSVMEIWNAMKAD-GYNDNVVAYTAVIDALCQVGRVFEALE 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ + YN+++ G+
Sbjct: 357 MFDEMKQKGIVPEQYSYNSLISGF 380
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 12 TYNFLVKCLCKCRSLTTV----YNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
TYN ++ L K R L YN + Q G P TY L+D + + +A
Sbjct: 827 TYNTIISGLVKSRRLEQAIDLYYNLMSQ-----GFSPTPCTYGPLLDGLLKAGRIEDAEN 881
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + + G K +C +YN ++ G+
Sbjct: 882 LFNEMLEYGCKANCTIYNILLNGH 905
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L++ LC ++ + +M+ S KP+ VTY L+D + + + M
Sbjct: 263 PDVITHTVLIQVLCDAGRISDAKDVFWKMKKS-DQKPDRVTYITLLDKFGDNGDSQSVME 321
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +A+ G+ + Y ++
Sbjct: 322 IWNAMKADGYNDNVVAYTAVI 342
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ N L+ L K + Q++ + ++P TY L+ + ++E M
Sbjct: 508 PDVLAVNSLIDTLYKAGRGDEAWRIFYQLK-EMNLEPTDGTYNTLLAGLGREGKVKEVMH 566
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + S + P+ YNTI+
Sbjct: 567 LLEEMYHSNYPPNLITYNTIL 587
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSL-TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD TY ++KC K V F D + + P+++ LID + EA
Sbjct: 473 PDTITYTMMIKCCSKASKFDEAVKIFYDMIENN--CVPDVLAVNSLIDTLYKAGRGDEAW 530
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
R+ L + +P YNT++ G
Sbjct: 531 RIFYQLKEMNLEPTDGTYNTLLAG 554
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ N ++ L K L +++A +G+ P+ +TYT++I
Sbjct: 434 KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKA-MGVSPDTITYTMMIKCCSKASKFD 492
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+++ + ++ PD N+++
Sbjct: 493 EAVKIFYDMIENNCVPDVLAVNSLI 517
>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 376
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + +A++
Sbjct: 197 PNIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLNPGVITYSMLMKGLCLDHKVEKALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNVLIHG 278
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ L +M ++ PN++TY LI+ +C + EA
Sbjct: 162 PNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPNIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLNPGVITYSMLMKG 243
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNAHVYNTLING 173
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
Length = 579
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++FTYN +++ LC + YN +D++ + G KP++ +Y L++ C K + +A
Sbjct: 326 LTPNVFTYNAVIRLLCDLGEINEAYNILDEI-TTQGEKPDVWSYNTLLNAHCKLKEVNKA 384
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+RL+S + PD YN ++K
Sbjct: 385 LRLISRMDKELCPPDRHSYNMLLK 408
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L+ LC+ +T+ + M+ S G+ PN TY + C +K++R A+R+
Sbjct: 258 DVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRV 317
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ + P+ F YN +++
Sbjct: 318 LDRMHTHALTPNVFTYNAVIR 338
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY + C + + +D+M + PN+ TY +I +C+ + EA
Sbjct: 291 LVPNAATYGPFLHAACASKDVRAALRVLDRMHTH-ALTPNVFTYNAVIRLLCDLGEINEA 349
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ ++ G KPD + YNT++ +
Sbjct: 350 YNILDEITTQGEKPDVWSYNTLLNAH 375
>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
Length = 586
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++FTYN +++ LC + YN +D++ + G KP++ +Y L++ C K + +A
Sbjct: 333 LTPNVFTYNAVIRLLCDLGEINEAYNILDEI-TTQGEKPDVWSYNTLLNAHCKLKEVNKA 391
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+RL+S + PD YN ++K
Sbjct: 392 LRLISRMDKELCPPDRHSYNMLLK 415
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L+ LC+ +T+ + M+ S G+ PN TY + C +K++R A+R+
Sbjct: 265 DVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRV 324
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ + P+ F YN +++
Sbjct: 325 LDRMHTHALTPNVFTYNAVIR 345
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY + C + + +D+M + PN+ TY +I +C+ + EA
Sbjct: 298 LVPNAATYGPFLHAACASKDVRAALRVLDRMHTH-ALTPNVFTYNAVIRLLCDLGEINEA 356
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ ++ G KPD + YNT++ +
Sbjct: 357 YNILDEITTQGEKPDVWSYNTLLNAH 382
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY+ ++ C+ + T Y QM + G PNLVTY L+ +C + EA
Sbjct: 73 LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLCRNGLMDEA 131
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G +PD F Y+T+M G
Sbjct: 132 YELLDEMRERGLQPDKFSYDTLMAG 156
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ C+ T Y +++M + G++PN++TY LI C T +L EA +
Sbjct: 460 PNVVTYTALIDAFCRAGKPTVAYKLLEEMVGN-GVQPNVITYRSLIGGFCGTGDLEEARK 518
Query: 68 LVSALS-DSGFKPDCFVYNTIMKG 90
++ L D K D F Y +M G
Sbjct: 519 MLERLERDENCKADMFAYRVMMDG 542
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ Y+ L+ LCK L ++MR + +P++VT+T L+D +C L+EA
Sbjct: 179 PPDVVAYSTLIAGLCKTGRLDEACKLFEKMREN-SCEPDVVTFTALMDGLCKGDRLQEAQ 237
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + D P+ Y++++ G
Sbjct: 238 QVLETMEDRNCTPNVITYSSLIDG 261
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TYN L+ CK + Y + +M+ S G+ PN+VTY+ +I C + A +
Sbjct: 40 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKES-GLAPNVVTYSTVIHGFCRQTKVDTAYK 98
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++G P+ YNT++ G
Sbjct: 99 LFRQMVENGCMPNLVTYNTLLSG 121
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY LV CK + + +M A G +PN+VTYT LID C A +
Sbjct: 425 PDVYTYTSLVDGFCKVGRMVEARRVLKRM-AKRGCQPNVVTYTALIDAFCRAGKPTVAYK 483
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G +P+ Y +++ G+
Sbjct: 484 LLEEMVGNGVQPNVITYRSLIGGF 507
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK + +M GI+PN+VTY LI C T + A+
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR-GIEPNVVTYNSLIHGFCMTNGVDSALL 308
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G PD YNT++ G
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDG 331
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TYN L+ C + + +++M A+ G P+++TY LID +C T
Sbjct: 278 MIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTAT-GCLPDIITYNTLIDGLCKTG 336
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL + PD Y+ ++ G+
Sbjct: 337 RAPEANRLFGDMKAKFCNPDVITYSCLIGGF 367
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L+ LCK L ++ M PN++TY+ LID +C T +R+A
Sbjct: 215 PDVVTFTALMDGLCKGDRLQEAQQVLETME-DRNCTPNVITYSSLIDGLCKTGQVRDAQE 273
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G +P+ YN+++ G+
Sbjct: 274 VFKRMIVRGIEPNVVTYNSLIHGF 297
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ CK + D M + P++VT++ L++ CN + +A R
Sbjct: 355 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQ-AVLPDVVTFSTLVEGYCNAGLVDDAER 413
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + S PD + Y +++ G+
Sbjct: 414 LLEEMVASDCSPDVYTYTSLVDGF 437
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC+ + Y +D+MR G++P+ +Y L+ +C T + A++
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRER-GLQPDKFSYDTLMAGLCKTGKIDMALK 168
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S+ PD Y+T++ G
Sbjct: 169 VFEDNSNGDCPPDVVAYSTLIAG 191
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ T+ ++ LCK L + +M+ G PN TY +LI+ C + A L
Sbjct: 6 NVITWTIMIDGLCKANRLPEATTYFAKMKKK-GTVPNEWTYNVLINGFCKVHKVHRAYLL 64
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +SG P+ Y+T++ G+
Sbjct: 65 LKEMKESGLAPNVVTYSTVIHGF 87
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD F+Y+ L+ LCK + + ++ P++V Y+ LI +C T L
Sbjct: 141 RGLQPDKFSYDTLMAGLCKTGKIDMALKVFED-NSNGDCPPDVVAYSTLIAGLCKTGRLD 199
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L + ++ +PD + +M G
Sbjct: 200 EACKLFEKMRENSCEPDVVTFTALMDG 226
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ C L ++++ K ++ Y +++D +C T + A+
Sbjct: 495 PNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALE 554
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ A+ SG P +Y +++G
Sbjct: 555 LLEAIKQSGTPPRHDIYVALIRG 577
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I PD+ TY ++ LCK + + Y + +MR + G +PN+ TY LI +C +
Sbjct: 349 MIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMREN-GCEPNIYTYNALIQGLCAVR 407
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ LV+ + G P+ + Y + G
Sbjct: 408 RPEEALELVTLMEQGGVPPNIYTYTILTHG 437
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I+TYN L++ LC R V M G+ PN+ TYTIL +C + L A
Sbjct: 391 PNIYTYNALIQGLCAVRRPEEALELVTLMEQG-GVPPNIYTYTILTHGLCKLRRLDRAKE 449
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G KP+ YNT++ GY
Sbjct: 450 MFNEALARGLKPNRVTYNTLLNGY 473
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+I+TY L LCK R L ++ A G+KPN VTY L++ C L EA
Sbjct: 424 VPPNIYTYTILTHGLCKLRRLDRAKEMFNEALAR-GLKPNRVTYNTLLNGYCRGSRLIEA 482
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M ++ + + PD Y T+++G
Sbjct: 483 MDILKEMHQNDCTPDHVTYTTLIQG 507
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
TY +++C + +D M + P++VTYTI+I +C K + +A ++
Sbjct: 324 LTYTSMIQCFFLKEKMEDAMKLLDDMIQN-NYAPDVVTYTIVISALCKRKMIEQAYGVLQ 382
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ ++G +P+ + YN +++G
Sbjct: 383 KMRENGCEPNIYTYNALIQG 402
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TYN L+ C+ L + + +M + P+ VTYT LI + L
Sbjct: 457 RGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQN-DCTPDHVTYTTLIQGLVQGNQLP 515
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R+ + + G+ + N + +G
Sbjct: 516 DALRMHDEMENKGYDVNFDTLNILARG 542
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y + CL + + +M + G PNL TY +I C L +A +++ +
Sbjct: 571 YYLAIHCLSTAGEMEEAQALLYEM-INKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFM 629
Query: 73 SDSGFKPDCFVYNTIMKGY 91
++G PD YN ++K +
Sbjct: 630 IENGIGPDTGSYNILIKEF 648
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ +YN ++ LCK + + + +M + G KP++VTY +ID++C +
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQN-GCKPDVVTYNTIIDSLCKDR 242
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +AM +S + D G P+ F YN ++ G+
Sbjct: 243 LVNDAMEFLSEMLDRGIPPNVFTYNCMVHGF 273
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ L++ LC+ N +M S G+ PNLVTY+IL+D C +L
Sbjct: 397 KALNPDTVTYSTLMQGLCQFGRPKEALNIFKEM-CSYGLLPNLVTYSILLDGFCKHGHLD 455
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L+ ++ + +P+ + +++G
Sbjct: 456 EALKLLKSMQEKKLEPNIVHHTILIEG 482
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PP++FTYN +V C L +M + P+ VT TIL+D +C
Sbjct: 254 MLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM-VGRDVMPDTVTLTILVDGLCKEG 312
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + +++ G +P+ YN +M GY
Sbjct: 313 MVSEARLVFETMTEKGVEPNISTYNALMDGY 343
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++++ N L+ CLC+ + + + +M LGI P T+ LI+ +CN ++EA+ L
Sbjct: 122 NVYSLNVLINCLCRLNHVDFAVSILGKM-FKLGIHPTASTFNALINGLCNEGKIKEAVEL 180
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G +P+ YNTI+ G
Sbjct: 181 FNEMVRRGHEPNVISYNTIING 202
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TYN L+ C R + + M G P + +Y ILI+ C ++ +
Sbjct: 327 KGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM-IRQGCAPGVHSYNILINGFCKSRRMD 385
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L++ + PD Y+T+M+G
Sbjct: 386 EAKSLLAEMYHKALNPDTVTYSTLMQG 412
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P T+N L+ LC + ++M G +PN+++Y +I+ +C T N A
Sbjct: 154 IHPTASTFNALINGLCNEGKIKEAVELFNEM-VRRGHEPNVISYNTIINGLCKTGNTSMA 212
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + + +G KPD YNTI+
Sbjct: 213 VDVFKKMEQNGCKPDVVTYNTII 235
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD T LV LCK + + V + G++PN+ TY L+D C +
Sbjct: 289 MVGRDVMPDTVTLTILVDGLCK-EGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQR 347
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G P YN ++ G+
Sbjct: 348 LMNEAKKVFEIMIRQGCAPGVHSYNILINGF 378
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P + +YN L+ CK R + + + +M + P+ VTY+ L+ +C
Sbjct: 359 MIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHK-ALNPDTVTYSTLMQGLCQFG 417
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ + + G P+ Y+ ++ G+
Sbjct: 418 RPKEALNIFKEMCSYGLLPNLVTYSILLDGF 448
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L P+I + L++ + L ++ A GI+P + TYT++I +
Sbjct: 467 KKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFAD-GIRPTIRTYTVMIKGLLKEGLSD 525
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + D GF P+ YN +++G+
Sbjct: 526 EAYDLFRKMEDDGFLPNSCSYNVMIQGF 553
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ CK + + VDQM + P+ VTYT LID C L EAM+
Sbjct: 283 PNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMK 342
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + +P+ YN I+ G
Sbjct: 343 YMEEMVSRNCEPNVLTYNAIIYG 365
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY +++ CK + N D+M G KPNLVTY +I+ C + AM+
Sbjct: 251 PDVSTYTTIIRGYCKMGMIENAKNVFDEM----GCKPNLVTYNTMINGFCKKGLMESAMK 306
Query: 68 LVSALSDS-GFKPDCFVYNTIMKGY 91
+V ++++ PD Y T++ GY
Sbjct: 307 IVDQMTETEDCMPDTVTYTTLIDGY 331
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ CK L ++++M S +PN++TY +I +C N+ EA R
Sbjct: 319 PDTVTYTTLIDGYCKRGELEEAMKYMEEM-VSRNCEPNVLTYNAIIYGLCLNGNVDEAKR 377
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + +G K + + +I+KG
Sbjct: 378 MMTRMRLNGLKDNVATHTSILKG 400
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ TYN ++ LC ++ + +MR + G+K N+ T+T ++ +C
Sbjct: 347 MVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLN-GLKDNVATHTSILKGLCVVG 405
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L +A R + + G + D Y ++ Y
Sbjct: 406 KLDDAARHLKEMVGLGMEADAKAYGVVVNEY 436
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+F+YN ++ K + DQ+ +KP++ TYT +I C + A
Sbjct: 217 LFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAK--- 273
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ + G KP+ YNT++ G+
Sbjct: 274 NVFDEMGCKPNLVTYNTMINGF 295
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK-NLREAM 66
P + ++N + + L + + QM+ LG PN ++Y+ +ID +C K + E
Sbjct: 459 PSVSSFNAVFRILVESGKTDKAGLILRQMK-QLGCTPNFLSYSTVIDGLCKAKGRMHEVE 517
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
V + +G D +Y+ ++KGY
Sbjct: 518 EFVDDMCRNGHHLDASMYSWLVKGY 542
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LC+ ++ DQ+ + G+ P+LVT+ IL++ C+ R+A
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQL-TNKGL-PDLVTFHILMEGYCSRGESRKAAM 491
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S G KP YN +MKGY
Sbjct: 492 LLKEMSKMGLKPRHLTYNIMMKGY 515
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC + D+M S G++PNL+TY LI+ C ++EA+
Sbjct: 329 PNVITYNSLINGLCNGGKINEAIGMRDKM-VSAGVQPNLITYHSLINGFCKNGMMKEALD 387
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G +P +YN ++ Y
Sbjct: 388 MFDSVKGQGTRPTTRMYNMLIDAY 411
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC--- 57
+I +++ P++FT+N ++ LCK + + ++ M+ G PN+V+Y LID C
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKV-YGYSPNVVSYNTLIDGYCKLG 272
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A ++ + ++ P+ +N ++ G+
Sbjct: 273 GNGKMYKADAVLKEMVENEVSPNLTTFNILIDGF 306
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ TY+ L+ CK + + D ++ G +P Y +LID C
Sbjct: 357 MVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQ-GTRPTTRMYNMLIDAYCKLG 415
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + L + G PD YN ++ G
Sbjct: 416 KIDDGFALKEEMEREGIVPDVGTYNCLIAG 445
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN ++K CK +L N QM ++ N+ +Y +L+ L +A
Sbjct: 501 LKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDA 560
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
L++ + + G P+ Y +
Sbjct: 561 NMLLNEMLEKGLVPNRITYEIV 582
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 15 FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74
+V L + RS Y + + +R I+PN+ T+ ++I+ +C T + +A ++ +
Sbjct: 194 LMVALLKQNRSADVEYLYKEMIRRK--IQPNVFTFNVVINALCKTGKMNKARDVMEDMKV 251
Query: 75 SGFKPDCFVYNTIMKGY 91
G+ P+ YNT++ GY
Sbjct: 252 YGYSPNVVSYNTLIDGY 268
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 2 IFKQLP----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+F QL PD+ T++ L++ C + +M + +G+KP +TY I++ C
Sbjct: 458 LFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEM-SKMGLKPRHLTYNIMMKGYC 516
Query: 58 NTKNLREAMRLVSALS-DSGFKPDCFVYNTIMKGY 91
NL+ A + + + + + + YN +++GY
Sbjct: 517 KEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGY 551
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ CK + +R + G+ P ++TY ILID C +L EA
Sbjct: 368 LLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRA-GLAPTVLTYNILIDGYCRLGDLEEA 426
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + G PD + Y +MKG
Sbjct: 427 RRLKEEMVEQGCLPDVYTYTILMKG 451
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + D TYN L+ LCK +L + QM S G++P+ +TYT LI C
Sbjct: 503 IMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQM-ISNGLQPDCITYTCLIHAHCERG 561
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
LREA + + + G P Y I+ Y
Sbjct: 562 FLREARKFFNDMISDGLPPSAVTYTVIIHAY 592
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVC 57
++ K L PD F YN + ++ + Q+R + GI + VTY ILID +C
Sbjct: 468 MLSKGLRPDCFAYNTRICAEITLGDISKSF----QLREVIMLEGISSDTVTYNILIDGLC 523
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
T NL++A L+ + +G +PDC Y ++ +
Sbjct: 524 KTGNLKDAEELMMQMISNGLQPDCITYTCLIHAH 557
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ L + + +MRA +G+ P+++TY L++ C N +EA+
Sbjct: 335 PTVVTYNAMIHGLLQSGQIEAAQAKFVEMRA-MGLLPDVITYNSLLNGYCKAGNQKEALL 393
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L +G P YN ++ GY
Sbjct: 394 LFGDLRRAGLAPTVLTYNILIDGY 417
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID---NVCNTKNL 62
L P + TYN L+ C+ L ++M G P++ TYTIL+ NVC+
Sbjct: 403 LAPTVLTYNILIDGYCRLGDLEEARRLKEEM-VEQGCLPDVYTYTILMKGSHNVCSLAMT 461
Query: 63 REAMRLVSALSDSGFKPDCFVYNT 86
RE + G +PDCF YNT
Sbjct: 462 RE---FFDEMLSKGLRPDCFAYNT 482
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I LPP TY ++ C+ +L + Y + +M G++PN +TY +LI +C
Sbjct: 573 MISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEE-GVEPNEITYNVLIHALCRMG 631
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A R + + G P+ + Y ++ G
Sbjct: 632 RTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L PD TY L+ C+ L F + M S G+ P+ VTYT++I C
Sbjct: 538 MISNGLQPDCITYTCLIHAHCERGFLREARKFFNDM-ISDGLPPSAVTYTVIIHAYCRRG 596
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
NL A + + G +P+ YN ++
Sbjct: 597 NLYSAYGWFRKMLEEGVEPNEITYNVLI 624
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FTYN L+ L + V + +M GI P +VTY +I + + + A
Sbjct: 303 FTYNPLITGLLARGFVKKVDDLQLEMENE-GIMPTVVTYNAMIHGLLQSGQIEAAQAKFV 361
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ G PD YN+++ GY
Sbjct: 362 EMRAMGLLPDVITYNSLLNGY 382
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L D+ TYN L+ CK + + +M ++G+KPN VTY L+D C NL+
Sbjct: 443 ELKADVVTYNILIGGWCKDGEPSKAEKLLGEM-LNVGVKPNHVTYNTLMDGYCMEGNLKA 501
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+++ + + G + + YN ++KG+
Sbjct: 502 ALKVRTQMEKEGKRANVVTYNVLIKGF 528
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TYN L+ L L D+M LG+KPN+VT+ LI+ C K ++
Sbjct: 302 QGLKPNIVTYNSLINGLSNNGKLDEAIALWDKM-VGLGLKPNIVTFNALINGFCKKKMIK 360
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L +++ P+ +NT++ +
Sbjct: 361 EARKLFDDIAEQDLVPNAITFNTMIDAF 388
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ CK ++ N ++M+ G+KPN+VTY LI+ + N L EA+
Sbjct: 271 PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQ-GLKPNIVTYNSLINGLSNNGKLDEAIA 329
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KP+ +N ++ G+
Sbjct: 330 LWDKMVGLGLKPNIVTFNALINGF 353
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ T+N ++ CK + + + M GI PN+ TY LI +C +N+R
Sbjct: 372 QDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDE-GIFPNVSTYNCLIAGLCRNQNVR 430
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L++ + + K D YN ++ G+
Sbjct: 431 AAKKLLNEMENYELKADVVTYNILIGGW 458
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I T+N L+ CK + + D + A + PN +T+ +ID C + E
Sbjct: 339 LKPNIVTFNALINGFCKKKMIKEARKLFDDI-AEQDLVPNAITFNTMIDAFCKAGMMEEG 397
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++ D G P+ YN ++ G
Sbjct: 398 FALHNSMLDEGIFPNVSTYNCLIAG 422
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T+N + LCK L + ++ ++A G PN+VTY LID C
Sbjct: 191 MIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKA-WGFSPNIVTYNTLIDGHCKKG 249
Query: 61 NLREAMRLVSALSD---SGFKPDCFVYNTIMKGY 91
+ + R + L + + P+ +NT++ G+
Sbjct: 250 SAGKMYRADAILKEMLANKICPNEITFNTLIDGF 283
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TYN L+ C +L QM G + N+VTY +LI C T L +A
Sbjct: 479 VKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKE-GKRANVVTYNVLIKGFCKTGKLEDA 537
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
RL++ + + G P+ Y+ +
Sbjct: 538 NRLLNEMLEKGLNPNRTTYDVV 559
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI +NF++ LCK + N D S+G+ PN++ Y L+D C +
Sbjct: 490 KGMRPDIGCFNFIINNLCKLGRVMDAQNIFD-FTISIGLHPNVMVYNTLMDGYCLVGKME 548
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+R+ + +G +P+ VY T++ GY
Sbjct: 549 NALRVFDVMVSAGIQPNVVVYGTLVNGY 576
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ TYN +V LCK R++ + QM G+ P+ TY LI +T
Sbjct: 242 MVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQM-VDKGVLPDNWTYNSLIYGYSSTG 300
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+R+ ++ G PD N++M
Sbjct: 301 QWKEAVRVSKKMTSQGILPDVVTLNSLM 328
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P I TY+FL++ C L + V QM + G++P++ + +I+N+C
Sbjct: 452 MIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQM-MNKGMRPDIGCFNFIINNLCKLG 510
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + G P+ VYNT+M GY
Sbjct: 511 RVMDAQNIFDFTISIGLHPNVMVYNTLMDGY 541
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ YN L+ C + D M S GI+PN+V Y L++ C + E
Sbjct: 527 LHPNVMVYNTLMDGYCLVGKMENALRVFDVM-VSAGIQPNVVVYGTLVNGYCKVGRIDEG 585
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KP +YN I+ G
Sbjct: 586 LSLFREILHKGIKPSTTLYNIILHG 610
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +N L+K KC L ++MR G++P++VTY+ +I +C + +A
Sbjct: 387 IAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQ-GVEPDVVTYSTVIAALCRIGKMDDA 445
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + D G P Y+ +++G+
Sbjct: 446 VEKFNQMIDQGVAPSISTYHFLIQGF 471
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN ++ K + + ++M GI P+L TY +++ +C + + +A
Sbjct: 214 PNAVAYNTVIDGFFKEGDVNKACDLFNEM-VQRGISPDLSTYNCVVNALCKARAMDKAEA 272
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D G PD + YN+++ GY
Sbjct: 273 ILRQMVDKGVLPDNWTYNSLIYGY 296
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T N L+ LCK + + D M A G K ++ +Y I+++ L +
Sbjct: 319 PDVVTLNSLMASLCKHGKIKDARDVFDSM-AMKGQKTDIFSYKIMLNGYATKGCLVDLTE 377
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD ++N ++K Y
Sbjct: 378 LFNLMLSDGIAPDSHIFNVLIKAY 401
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + L++ LC+ + + + LG P++ +Y I++ ++C+ + +A L
Sbjct: 142 DTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADEL 201
Query: 69 VSALSDSGFK--PDCFVYNTIMKGY 91
+ +++ G P+ YNT++ G+
Sbjct: 202 LRMMAEGGAVCLPNAVAYNTVIDGF 226
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ TYN ++ LC + Y +D+M + + PNL+T I++D +C + L
Sbjct: 382 KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHA-SLFPNLLTVNIMVDRLCKARKLE 440
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + S G PDC Y +++ G
Sbjct: 441 EAYKIFESASQRGCNPDCVTYCSLIDG 467
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ +TY+ L+ LC+ + + F M+ G+ PN+VTYT +I + N+ +A
Sbjct: 735 PPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ-GLVPNVVTYTTMISGLAKVGNITDAY 793
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L +G PD +N +++G
Sbjct: 794 SLFERFKANGGIPDAASFNALIEG 817
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI YN + C K ++ + F +++A G+KP+ V+YT +I +C L EA
Sbjct: 245 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEA 303
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + P + YNT++ GY
Sbjct: 304 EELFAQMEAERSVPCAYAYNTMIMGY 329
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T N +V LCK R L Y + + G P+ VTY LID + + EA
Sbjct: 419 LFPNLLTVNIMVDRLCKARKLEEAYKIFESA-SQRGCNPDCVTYCSLIDGLGKKGQVDEA 477
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL + D+G + VY ++++ +
Sbjct: 478 YRLFEKMLDAGHNANPVVYTSLIRNF 503
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK+L PD+ N + C+ K + + +R S G P++ +Y+ILI +
Sbjct: 515 IFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIR-SYGFLPDVRSYSILIHGL 573
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
RE + A+ GF D YN ++ G+
Sbjct: 574 TKAGQARETSNIFHAMKQQGFALDARAYNAVVDGF 608
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + TY +V L K L Y ++ + S GI+ N+V Y+ LID +
Sbjct: 627 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK-SKGIELNVVLYSSLIDGFGKVGRID 685
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA ++ + G P+ + +N+++
Sbjct: 686 EAYLILEEMMKKGLTPNVYTWNSLL 710
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN +V CK + Y +++M+ ++P + TY ++D + L EA L
Sbjct: 597 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPTVATYGAIVDGLAKIDRLDEAYML 655
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
G + + +Y++++ G+
Sbjct: 656 FEEAKSKGIELNVVLYSSLIDGF 678
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY ++ L K ++T Y+ ++ +A+ GI P+ ++ LI+ + N EA
Sbjct: 769 LVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI-PDAASFNALIEGMSNANRAMEA 827
Query: 66 MRL 68
++
Sbjct: 828 YQV 830
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ Y+ L+ K + Y +++M G+ PN+ T+ L+D + + +
Sbjct: 662 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK-GLTPNVYTWNSLLDALVKAEEIN 720
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++ + P+ + Y+ ++ G
Sbjct: 721 EALVCFQSMKEMKCPPNTYTYSILING 747
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD+ N ++ LCK + + + +++M + +G P++VTY IL+D +C T +
Sbjct: 286 KRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEM-SKIGAVPDVVTYNILLDGLCKTNLVD 344
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A L S + D+G PD Y+ ++ G
Sbjct: 345 KAHELFSTMVDNGCAPDIVSYSVVLNG 371
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TY+ ++ LCK +T V++M G+ P++ TYTI++D +C +
Sbjct: 4 KGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEK-GVNPDVATYTIIVDRLCRAGKVD 62
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + + G + YN ++ G
Sbjct: 63 EADELFHKMIERGCSANTVAYNALING 89
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TY +V LC+ + +M G N V Y LI+ +C +N+
Sbjct: 39 KGVNPDVATYTIIVDRLCRAGKVDEADELFHKM-IERGCSANTVAYNALINGLCKDENIE 97
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +L+ ++ G++PD YNTI+ G
Sbjct: 98 RAYKLLEEMASKGYEPDNITYNTILSG 124
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ YN L+ L K + + M A + P+L+TY LID C + EAM
Sbjct: 148 PDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAM 207
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L + G+ PD YN+I+ G
Sbjct: 208 KLFKDVIAKGYMPDTVTYNSILLG 231
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L PD+ T+N L+ LCK L + +D M + + P+ VT T L+ +C K
Sbjct: 388 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVM-SEHNVLPDGVTCTTLMHGLCRDK 446
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+RL + + G D +N ++ G
Sbjct: 447 RTDEAVRLFQYMVEKGTVADVLPHNIVLAG 476
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK + + M + G P++V+Y+++++ +C T + +A
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDN-GCAPDIVSYSVVLNGLCKTNKVHDARV 383
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + PD +N +M G
Sbjct: 384 LFDRMIERKLVPDVVTFNILMDG 406
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ LCK ++ Y +++M AS G +P+ +TY ++ +C + EA + ++
Sbjct: 83 YNALINGLCKDENIERAYKLLEEM-ASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSM 141
Query: 73 SDSGFKPDCFVYNTIM 88
G+ PD YN ++
Sbjct: 142 PSRGYSPDVVAYNGLL 157
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +Y+ ++ LCK + D+M + P++VT+ IL+D +C L EA
Sbjct: 360 PDIVSYSVVLNGLCKTNKVHDARVLFDRM-IERKLVPDVVTFNILMDGLCKAGKLDEAKD 418
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +S+ PD T+M G
Sbjct: 419 LLDVMSEHNVLPDGVTCTTLMHG 441
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-IKPNLVTYTILIDNVCNTKNLREAMR 67
D+ +N ++ LC+ L F M S G P++VTYT L++ + + +A+
Sbjct: 466 DVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVD 525
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ SG PD YNT+M G
Sbjct: 526 YFQQMTGSGCAPDYVAYNTLMNG 548
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD+ TY LV L + + ++ QM S G P+ V Y L++ + +
Sbjct: 499 EFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGS-GCAPDYVAYNTLMNGLRKQGRHIQ 557
Query: 65 AMRLVSALSDSGFKPDCF 82
A RL A+ + GF DCF
Sbjct: 558 ADRLTQAMKEKGFLSDCF 575
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TYN L+ C+ + A G P+ VTY ++ + N+
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAK-GYMPDTVTYNSILLGLARKSNMD 239
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + DSG P+ Y+ ++ G+
Sbjct: 240 EAEEMFKKMVDSGCAPNGATYSIVLSGH 267
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
A G +P++VTY+ +I +C T + EA+ +V +++ G PD Y I+
Sbjct: 2 AEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIV 52
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD TYN ++ L + ++ +M S G PN TY+I++ C
Sbjct: 213 VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDS-GCAPNGATYSIVLSGHCRVG 271
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N+ + L +++ F PD + N ++
Sbjct: 272 NMARCLELYEEMTEKRFSPDVLLCNAVI 299
>gi|255661010|gb|ACU25674.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 376
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F P I TY+ L+ LCK + Y+ V +M G+ P+++TY++L+ +C +
Sbjct: 192 FPHCSPTIVTYSILINGLCKSERFSEAYDLVKEMLEK-GLTPSVITYSLLMKGLCLGHKV 250
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A++L + ++ GFKPD ++N ++ G
Sbjct: 251 EMALQLWNQVTKKGFKPDVQMHNILIHG 278
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 4 KQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K PD+ +N L+ LC K + ++Y +++ S PNLVT+ L++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVAKTQHALSLYLDMNRWNCS----PNLVTHNTLMEGFYKDG 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++R A+ + + + + +PD YN +KG
Sbjct: 319 DIRNALVMWARILKNELQPDIISYNITLKG 348
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + + ++ G + + Y +I+ +C L +A+ +
Sbjct: 93 DSITYGILVHGFCKNGYINKSLHLL-EIXERKGRXXDALAYXPMINGLCKETKLEKAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYN ++ G
Sbjct: 152 LNGMIQSGCKPNTHVYNALING 173
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD + +N ++ C + + + QM+ G++P++V+Y +ID C K
Sbjct: 538 MIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIE-GVQPDVVSYGTIIDGYCKAK 596
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++++A ++ L G KP+ +YN ++ GY
Sbjct: 597 DIQKANEYLNELMACGLKPNAVIYNALIGGY 627
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ Y +++ LCK + N+ ++MR S I PN +TYT L+ C + N EA +L
Sbjct: 687 VVGYTIMIQGLCKIGKMDEAMNYFEEMR-SRSIPPNKITYTTLMYAYCKSGNNEEASKLF 745
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ SG PD YNT++ G+
Sbjct: 746 DEMVSSGIVPDNVSYNTLVTGF 767
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L +I T N L+ LC+ +++ + M + G++ + +TY I+I C
Sbjct: 468 MLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTM-VNKGMELDNITYNIMIQGCCKDS 526
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA++L + GFKPD +++N+I+ Y
Sbjct: 527 KIEEALKLRDDMIRKGFKPDAYMFNSIIHAY 557
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y ++ CK + + +++++ A G+KPN V Y LI N+ A+
Sbjct: 580 PDVVSYGTIIDGYCKAKDIQKANEYLNELMAC-GLKPNAVIYNALIGGYGRNGNISGAIG 638
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G +P Y ++M
Sbjct: 639 VLDTMESIGIQPTNVTYCSLM 659
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TY L+ +C + +Q R + I+ +V YTI+I +C + EA
Sbjct: 648 IQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKN-SIEVGVVGYTIMIQGLCKIGKMDEA 706
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + P+ Y T+M Y
Sbjct: 707 MNYFEEMRSRSIPPNKITYTTLMYAY 732
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ P + T N L++ L + +L D+MR + PN +YT +I +C +
Sbjct: 187 RRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVD 246
Query: 64 EAMRLVSALSDSGFKPD--CFVYNTIM 88
+ +++S L +G + YN +M
Sbjct: 247 DGFKILSDLIHAGLQQSAGAVPYNLLM 273
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP+ TY L+ CK + D+M +S GI P+ V+Y L+ +L
Sbjct: 716 RSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSS-GIVPDNVSYNTLVTGFSQVDSLD 774
Query: 64 EAMRLVSALSDSGFKPDCF 82
+A+ + +S + DC
Sbjct: 775 KAIEKAAEISSIMTQNDCL 793
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + T+ L+ L + V + +M LGI PN V LID C + E
Sbjct: 296 RVAPSMVTFGILINGLKRSDRFGEVGALLREMEG-LGITPNEVICNELIDWHCRKGHFTE 354
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL + K YN I +
Sbjct: 355 AIRLFDEMVSKEMKSTAVTYNLIARA 380
>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 376
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK+L P I TYN L+ LCK Y+ V +M G P+++TY++LI +
Sbjct: 186 VFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEK-GWNPSVITYSLLIKGL 244
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A++L + + GFKPD ++N ++ G
Sbjct: 245 CQDHKVEMALQLWNQVISKGFKPDVQMHNILIHG 278
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+I K PD+ +N L+ LC K + +Y ++ + PNLVTY L++
Sbjct: 260 VISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCA----PNLVTYNTLMEGFY 315
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ R A+ + + + +G PD YN +KG
Sbjct: 316 KGGDTRNALVIWARILRNGLLPDIISYNITLKG 348
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYN----FVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
D TY LV CK YN V ++ G + Y+ +I +C L +
Sbjct: 93 DSTTYGILVHGFCK-----NGYNNKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGKLDK 147
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ +++ + +SG KP+ VYN ++ G
Sbjct: 148 AVSVLNGMIESGCKPNTQVYNALING 173
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI+T+N L+K C L ++MR G+KP++VTY +I +C + +A
Sbjct: 390 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH-GVKPDVVTYRTVIAALCRIGKMDDA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + D G PD + Y+ +++G+
Sbjct: 449 MEKFNQMIDQGVAPDKYAYHCLIQGF 474
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD TY+ +V LCK R++ F+ QM + G+ PN TY LI +T
Sbjct: 245 MVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM-VNKGVLPNNWTYNNLIYGYSSTG 303
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+R+ + PD + +M
Sbjct: 304 QWKEAVRVFKEMRRHSILPDVVTLSMLM 331
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI ++ ++ LCK + N D + ++G+ P V Y++L+D C + +A+R+
Sbjct: 498 DIVFFSSIINNLCKLGRVMDAQNIFD-LTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRV 556
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
A+ +G +P+ VY T++ GY
Sbjct: 557 FDAMVSAGIEPNDVVYGTLVNGY 579
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P Y+ L+ C + D M S GI+PN V Y L++ C + E
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAM-VSAGIEPNDVVYGTLVNGYCKIGRIDEG 588
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KP +YN I+ G
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDG 613
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ T + L+ LCK + + D M A G PN+ +YTI+++
Sbjct: 311 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMKGQNPNVFSYTIMLNGY 369
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + L + G PD + +N ++K Y
Sbjct: 370 ATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 404
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K P++F+Y ++ L + + D M GI P++ T+ +LI N
Sbjct: 350 MAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDIYTFNVLIKAYANCG 408
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +AM + + + D G KPD Y T++
Sbjct: 409 MLDKAMIIFNEMRDHGVKPDVVTYRTVI 436
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD + Y+ L++ C SL + ++ + G+ ++V ++ +I+N+C
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLG 513
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + G P VY+ +M GY
Sbjct: 514 RVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L +I N L+K C+ + + + LG P++ +Y+IL+ ++C+
Sbjct: 137 LLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 196
Query: 61 NLREAMRLVSALSDSGF--KPDCFVYNTIMKGY 91
+A L+ +++ G PD Y+T++ G+
Sbjct: 197 KSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGF 229
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ ++ K + + +M GI P+ VTY+ ++ +C + + +A
Sbjct: 217 PDVVAYSTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDFVTYSSVVHALCKARAMDKAEA 275
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P+ + YN ++ GY
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGY 299
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI-KPNLVTYTILIDNVCNTKNLREAM 66
PD+F+Y+ L+K LC + + M + P++V Y+ +ID ++ +A
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKAC 239
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD Y++++
Sbjct: 240 DLFKEMVQRGIPPDFVTYSSVVHA 263
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 2 IFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK+L +I T N ++ + + R + + + S G+ P +VTY+I+I N+
Sbjct: 661 LFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRS-GLVPCVVTYSIMITNL 719
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EA + S++ ++G +PD + N +++
Sbjct: 720 IKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVR 752
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ Y LV CK + + +M GIKP+ + Y I+ID +
Sbjct: 560 MVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQK-GIKPSTILYNIIIDGLFEAG 618
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++SG + YN +++G
Sbjct: 619 RTVPAKVKFHEMTESGIAMNKCTYNIVLRG 648
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I YN L+ LCK ++ N + + A G+ PN VTYT LID C ++
Sbjct: 566 KGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGDIS 624
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + +G PD FVY+ + G
Sbjct: 625 NAFYLYNEMLATGITPDAFVYSVLTTG 651
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L++ CK R T + +MR G N VTY +LI +C + + EA
Sbjct: 113 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRER-GCGLNTVTYNVLIAGLCRSGAVEEA 171
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ D G PD F Y ++ G
Sbjct: 172 FGFKKDMEDYGLVPDGFTYGALING 196
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ L+ LCK + +D+M + G+ PN+V Y LID +C + ++ A
Sbjct: 535 PDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVDPNIVCYNALIDGLCKSGDISYARN 593
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +++ G P+C Y +++ G
Sbjct: 594 VFNSILAKGLVPNCVTYTSLIDG 616
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L+ KQ+ PD TYN +++ + + + + +M + GI PN+ TY+I+I
Sbjct: 278 LLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENA-GISPNVYTYSIMIHG 336
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C + +A L+ ++ G KP+ FVY ++ GY
Sbjct: 337 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 372
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ LCK R +D+M + +KPN+V Y LID N EA
Sbjct: 183 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCA-ELKPNVVVYANLIDGFMREGNADEA 241
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + +G +P+ Y+ +++G
Sbjct: 242 FKMIKEMVAAGVQPNKITYDNLVRG 266
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LC+ ++ + F M G+ P+ TY LI+ +C ++ EA L+
Sbjct: 154 TYNVLIAGLCRSGAVEEAFGFKKDME-DYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 212
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+S + KP+ VY ++ G+
Sbjct: 213 MSCAELKPNVVVYANLIDGF 232
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+++TY+ ++ LC+ + +++M + G+KPN Y LI C N+ A
Sbjct: 323 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEM-TTKGLKPNAFVYAPLISGYCREGNVSLA 381
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ PD + YN+++ G
Sbjct: 382 CEIFDKMTKVNVLPDLYCYNSLIFG 406
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++ YN L+ L K + + QM+ G+ PN TY+ LI +L A +
Sbjct: 395 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQER-GLLPNEFTYSGLIHGYLKNGDLESAEQ 453
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV + D+G KP+ +Y +++ Y
Sbjct: 454 LVQRMLDTGLKPNDVIYIDLLESY 477
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P++ Y L+ + + + + +M A+ G++PN +TY L+ +C +
Sbjct: 217 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA-GVQPNKITYDNLVRGLCKMGQMDR 275
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + +PD YN I++G+
Sbjct: 276 ASLLLKQMVRDSHRPDTITYNLIIEGH 302
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ F Y L+ C+ +++ D+M + + P+L Y LI + +
Sbjct: 356 KGLKPNAFVYAPLISGYCREGNVSLACEIFDKM-TKVNVLPDLYCYNSLIFGLSKVGRVE 414
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E+ + + + + G P+ F Y+ ++ GY
Sbjct: 415 ESTKYFAQMQERGLLPNEFTYSGLIHGY 442
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P I N L+K L + ++ ++ V + GI P++ TY+ LI+ C +
Sbjct: 76 RGLAPSIRCCNALLKDLLRADAMALLWK-VREFMVGAGISPDVYTYSTLIEAYCKVREFD 134
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++ + + G + YN ++ G
Sbjct: 135 TAKKVLVEMRERGCGLNTVTYNVLIAG 161
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ TY L+ CK ++ + ++M A+ GI P+ Y++L +
Sbjct: 598 ILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAG 656
Query: 61 NLREAMRLVSAL 72
+L +AM L+ +
Sbjct: 657 DLEQAMFLIEEM 668
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 36/122 (29%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT------------- 50
+ L P+ FTY+ L+ K L + V +M + G+KPN V Y
Sbjct: 426 RGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDT-GLKPNDVIYIDLLESYFKSDDIE 484
Query: 51 ----------------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
ILI N+ ++ N+ A R++S + +G PD VY++++
Sbjct: 485 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLI 544
Query: 89 KG 90
G
Sbjct: 545 SG 546
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y L+ L ++ + + ++ + G P++ Y+ LI +C T + +A ++ +
Sbjct: 505 YGILIHNLSSSGNMEAAFRVLSEIEKN-GSVPDVHVYSSLISGLCKTADREKAFGILDEM 563
Query: 73 SDSGFKPDCFVYNTIMKG 90
S G P+ YN ++ G
Sbjct: 564 SKKGVDPNIVCYNALIDG 581
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PD+ +YN L+ K R D ++A I P++VTY LID +C +
Sbjct: 401 LLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAG-NINPSIVTYNTLIDGLCESG 459
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL A RL ++ PD Y T++KG+
Sbjct: 460 NLEGAQRLKEEMTSQLIYPDVITYTTLLKGF 490
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L+ +CK ++ Y ++ +M GI PN +YTILI C+ E ++
Sbjct: 654 PNVMTHNALLHGMCKAGNIDEAYRYLCKMEEE-GISPNKYSYTILISKHCDLDKWEEVVK 712
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + D +PD + + + K
Sbjct: 713 LYKEMLDKEIEPDGYTHRALFK 734
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+L P + TY L+ K L + + +M+ G++PN++T+ L+ +C
Sbjct: 612 MLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKR-GVRPNVMTHNALLHGMCKAG 670
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N+ EA R + + + G P+ + Y ++
Sbjct: 671 NIDEAYRYLCKMEEEGISPNKYSYTILI 698
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LC+ +L ++M + L I P+++TYT L+ NL A
Sbjct: 443 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQL-IYPDVITYTTLLKGFVKNGNLSMATE 501
Query: 68 LVSALSDSGFKPDCFVYNT 86
+ + G KPD + Y T
Sbjct: 502 IYDEMLRKGIKPDGYAYTT 520
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD + Y + + ++M A P+L Y + ID +C
Sbjct: 506 MLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVG 565
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL +A+ + G PD Y T+++GY
Sbjct: 566 NLEKAIEFQRKIFRVGLVPDHVTYTTVIRGY 596
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + T+N ++ K L V +M+ I+ + VTY ILI+ +
Sbjct: 265 MVMHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRR-NIEFSEVTYNILINGFSKSG 323
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA R + SGF + +N +++GY
Sbjct: 324 KMEEARRFHGDMQRSGFPVTPYSFNPLIEGY 354
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY +++ + + D+M S + P+++TY +LI L +A
Sbjct: 582 LVPDHVTYTTVIRGYLEKGRFKMARDLYDEM-LSKRLSPSVITYFVLIHGHAKAGRLEQA 640
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + G +P+ +N ++ G
Sbjct: 641 FQYSTEMKKRGVRPNVMTHNALLHG 665
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN ++ LCK + +DQM + PN VTY LI +C + EA
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQM-ITRDCSPNTVTYNTLISTLCKENQVEEATE 386
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L+ G PD +N++++G
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQG 409
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T+N L++ LC R+ ++MR S G +P+ TY +LID++C+
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR-SKGCEPDEFTYNMLIDSLCSKG 449
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ ++ + SG YNT++ G+
Sbjct: 450 KLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD FTYN L+ LC L N + QM S G +++TY LID C R
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVITYNTLIDGFCKANKTR 487
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + G + YNT++ G
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDG 514
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ TYN L+ LCK + ++ S GI P++ T+ LI +C T+
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELA-RVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N R AM L + G +PD F YN ++
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLI 442
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LCK R + +DQM G KP+ TY L+ + C ++++A +V A
Sbjct: 507 TYNTLIDGLCKSRRVEDAAQLMDQMIME-GQKPDKYTYNSLLTHFCRGGDIKKAADIVQA 565
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +G +PD Y T++ G
Sbjct: 566 MTSNGCEPDIVTYGTLISG 584
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ CK D+M G+ N VTY LID +C ++ + +A +L+
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G KPD + YN+++ +
Sbjct: 529 DQMIMEGQKPDKYTYNSLLTHF 550
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N +V CK + NF+ +M G P+ T+ L++ +C +++ A+ ++
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ G+ PD + YN+++ G
Sbjct: 321 MLQEGYDPDVYTYNSVISG 339
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-GIKPNLVTYTILIDNVCNTKNLRE 64
L PD YN ++ L SL V + + S+ GIKP++ T+ +LI +C LR
Sbjct: 150 LKPDTHFYNRMLNLLVDGNSLKLVE--ISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRP 207
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ ++ + G PD + T+M+GY
Sbjct: 208 AILMLEDMPSYGLVPDEKTFTTVMQGY 234
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD +TYN L+ C+ + + V M ++ G +P++VTY LI +C
Sbjct: 531 MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLISGLCKAG 589
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +L+ ++ G YN +++G
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQG 619
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+N LV LCK + +D M G P++ TY +I +C ++EA+
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE-GYDPDVYTYNSVISGLCKLGEVKEAVE 351
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + P+ YNT++
Sbjct: 352 VLDQMITRDCSPNTVTYNTLI 372
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ T+N L+K LC+ L ++ M S G+ P+ T+T ++ +L A
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDM-PSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+ + + G N I+ G+
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGF 269
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ +V CL K L Y +M + G PNLVTY I+I +N
Sbjct: 461 LSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIEN-GCTPNLVTYNIMIALQAKARNYENV 519
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + +GF+PD Y+ +M+
Sbjct: 520 VKLYKDMQVAGFRPDKITYSIVME 543
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ + L ++M+ + G +P+ VTY LID L AM
Sbjct: 393 PTVVTYNRIIHAYGRANYLKEAVKVFEEMQEA-GYEPDRVTYCTLIDIHAKAGYLDIAMD 451
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + G PD F Y+ ++
Sbjct: 452 LYGRMQEVGLSPDTFTYSVMV 472
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY ++ L + R + +D+M + KP +VTY +I L+EA+++
Sbjct: 359 DGHTYTTMIGILGQARQFGVLKELLDEMSRA-HCKPTVVTYNRIIHAYGRANYLKEAVKV 417
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ ++G++PD Y T++
Sbjct: 418 FEEMQEAGYEPDRVTYCTLI 437
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +T+N L+K C L ++MR G+KP++VTY +I +C + +A
Sbjct: 393 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH-GVKPDVVTYRTVIAALCRIGKMDDA 451
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + D G PD + YN +++G+
Sbjct: 452 MEKFNQMIDQGVAPDKYAYNCLIQGF 477
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------RASLG- 41
++ + +PPD+ TYN +V LCK R++ F+ QM +S G
Sbjct: 248 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 307
Query: 42 ---------------IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
I P++VT ++L+ ++C ++EA + ++ G PD F YN
Sbjct: 308 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 367
Query: 87 IMKGY 91
++ GY
Sbjct: 368 MLNGY 372
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI ++ ++ LCK + N D + ++G+ P+ V Y +L+D C + +A+R+
Sbjct: 501 DIVFFSSIINNLCKLGRVMDAQNIFD-LTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 559
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
A+ +G +P+ Y T++ GY
Sbjct: 560 FDAMVSAGIEPNVVGYGTLVNGY 582
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD YN L+ C + D M S GI+PN+V Y L++ C + E
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAM-VSAGIEPNVVGYGTLVNGYCKIGRIDEG 591
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KP +Y+ I+ G
Sbjct: 592 LSLFREMLQRGIKPSTILYSIIIDG 616
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F+YN ++ L + + D M GI P+ T+ +LI N L +AM
Sbjct: 360 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDFYTFNVLIKAYANCGMLDKAMI 418
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + D G KPD Y T++
Sbjct: 419 IFNEMRDHGVKPDVVTYRTVI 439
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD + YN L++ C SL + ++ + G+ ++V ++ +I+N+C
Sbjct: 458 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLG 516
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + G PD VYN +M GY
Sbjct: 517 RVMDAQNIFDLTVNVGLHPDAVVYNMLMDGY 547
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI-KPNLVTYTILIDNVCNTKNLREAM 66
PD+F+Y+ L+K LC + + M + PN+V Y +ID ++ +A
Sbjct: 183 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 242
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L + G PD YN+++
Sbjct: 243 DLFKEMVQRGIPPDLVTYNSVV 264
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TYN +++ L K R ++RA + +K N++T +ID + T+ + EA L
Sbjct: 641 DICTYNIVLRGLFKNRCFDEAIFLFKELRA-MNVKINIITLNTMIDGMFQTRRVEEAKDL 699
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+++S S P Y+ ++
Sbjct: 700 FASISRSRLVPSVVTYSIMI 719
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + L+ LCK + + D M A G P++ +Y I+++ L +
Sbjct: 325 PDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMKGQNPDVFSYNIMLNGYATKGCLVDMTD 383
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD + +N ++K Y
Sbjct: 384 LFDLMLGDGIAPDFYTFNVLIKAY 407
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I N L++ C+ + + + LG P++ +Y+IL+ ++C+ +A L
Sbjct: 148 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 207
Query: 69 VSALSDSGF--KPDCFVYNTIMKGY 91
+ +++ G P+ YNT++ G+
Sbjct: 208 LRMMAEGGAVCSPNVVAYNTVIDGF 232
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ Y LV CK + + +M GIKP+ + Y+I+ID + A
Sbjct: 568 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQR-GIKPSTILYSIIIDGLFEAGRTVPA 626
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++SG D YN +++G
Sbjct: 627 KMKFHEMTESGIAMDICTYNIVLRG 651
Score = 37.7 bits (86), Expect = 0.88, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ K + + +M GI P+LVTY ++ +C + + +A
Sbjct: 220 PNVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDLVTYNSVVHALCKARAMDKAEA 278
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + P+ + YN ++ GY
Sbjct: 279 FLRQMVNKRVLPNNWTYNNLIYGY 302
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD FT+ L+ LCK + ++ MR G +P+++TY L++ +C
Sbjct: 1181 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHK-GKEPDILTYNTLMNGLCLVG 1239
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L +A +L +L+D G K + F YN ++ GY
Sbjct: 1240 QLEDATKLFESLADRGIKLNVFSYNILINGY 1270
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LC L + + A GIK N+ +Y ILI+ C + + EA R
Sbjct: 1223 PDILTYNTLMNGLCLVGQLEDATKLFESL-ADRGIKLNVFSYNILINGYCKDQKIDEAFR 1281
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ G KP YNT++
Sbjct: 1282 FFEEMRPKGLKPSTVTYNTLI 1302
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+FTY ++ LCK T + +M + GI P++V Y+ L+D +C L+EA+
Sbjct: 1084 DVFTYGMIIDALCKDGMTTEALDMFSEMIGA-GILPDVVVYSSLMDGLCRFGRLKEALEF 1142
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G D + YN+++ G
Sbjct: 1143 FKEMEGRGISADVYTYNSLIHG 1164
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + D++TYN L+ L + V F++ M G P+ T+TILID +C +
Sbjct: 1149 RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLM-VDRGFSPDAFTFTILIDGLCKEGKVG 1207
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +++ + G +PD YNT+M G
Sbjct: 1208 EAQQILELMRHKGKEPDILTYNTLMNG 1234
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I ++ L+ +C+ L + D++ + G++P+ + Y ILI+ +CN L EA++
Sbjct: 1363 PNIEVFSILLDGMCRAGKLEEAWKQFDEISKN-GLEPDTIAYNILINGLCNKGMLSEAVK 1421
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G PD +N I++
Sbjct: 1422 LLWQMEEKGCLPDSITFNVIIQ 1443
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P TYN L+ LC+ + T +M+ + G L TY +L+D +C +L
Sbjct: 1289 KGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQ-TCGQFLKLSTYCVLLDGLCKNGHLE 1347
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L ++ + KP+ V++ ++ G
Sbjct: 1348 EAMDLFQSIKKTEHKPNIEVFSILLDG 1374
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D TY L+ LCK R ++M+ + K ++ TY ++ID +C
Sbjct: 1045 KGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGN--CKGDVFTYGMIIDALCKDGMTT 1102
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + S + +G PD VY+++M G
Sbjct: 1103 EALDMFSEMIGAGILPDVVVYSSLMDG 1129
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L+ LCK L + ++ + KPN+ ++IL+D +C L EA +
Sbjct: 1332 TYCVLLDGLCKNGHLEEAMDLFQSIKKTEH-KPNIEVFSILLDGMCRAGKLEEAWKQFDE 1390
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+S +G +PD YN ++ G
Sbjct: 1391 ISKNGLEPDTIAYNILING 1409
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD YN L+ LC L+ + QM G P+ +T+ ++I N+ + EA
Sbjct: 1396 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEK-GCLPDSITFNVIIQNLLKENEIHEA 1454
Query: 66 MRLVSALSDSGFKPD 80
++L+ + + F PD
Sbjct: 1455 IQLLEEMRNRNFSPD 1469
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++T N L+ C C R++ + V G +P+ VT T L+ V + +A
Sbjct: 977 IQPDLYTLNILIHCCCSLRAVGCGFG-VFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDA 1035
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++L ++ G D Y ++ G
Sbjct: 1036 VQLFDEMTKKGLLGDAKTYGILING 1060
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ + K +TV+ ++ +GI+P+L T ILI C+ + + +
Sbjct: 948 TFNHLLASVAKLGYYSTVFPMYRKIN-DVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGG 1006
Query: 72 LSDSGFKPDCFVYNTIMKG 90
GF+PD T++KG
Sbjct: 1007 FLKRGFEPDAVTVTTLVKG 1025
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K L PD++T+N L+ LCK ++M++S G P+ VTY ILID++C+
Sbjct: 396 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSS-GCAPDEVTYNILIDHLCSMG 454
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A+ L+ + +G YNTI+
Sbjct: 455 KLVNALDLLKEMESNGCPRSTVTYNTII 482
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN ++ CL K L V+QM G P+ T+ LI +C+ L EA+
Sbjct: 333 PDVFTYNTVINCLSKNGELDEAKGIVNQM-VDRGCLPDTTTFNTLIVALCSQNRLEEALD 391
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L L+ G PD + +N ++
Sbjct: 392 LARELTVKGLSPDVYTFNILI 412
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN ++ LCK + DQM A GI + VT+ LID +C K + +A
Sbjct: 472 PRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAH-GISRSAVTFNTLIDGLCKAKRIDDAT 530
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G +P YN+I+ Y
Sbjct: 531 ELIEQMVKEGLQPSNITYNSILTHY 555
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L+ LCK + + ++QM G++P+ +TY ++ + C +L++A ++
Sbjct: 512 TFNTLIDGLCKAKRIDDATELIEQM-VKEGLQPSNITYNSILTHYCKQGDLKKAADILET 570
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +GF+ D Y T++ G
Sbjct: 571 MTANGFEIDVVTYGTLING 589
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ T N L+K LC+ + T +++M +S + P+ T+T L+ ++
Sbjct: 189 RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM-SSHAVAPDETTFTTLMQGFIEEGSIE 247
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+R+ + + ++G P N ++ GY
Sbjct: 248 AALRVKTKMMETGCSPTRVTVNVLINGY 275
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN V CLC+ ++ +D M G P++ TY +I+ + L EA
Sbjct: 298 PDQVTYNTFVHCLCQNGHVSHALKVMDLMLQE-GHDPDVFTYNTVINCLSKNGELDEAKG 356
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V+ + D G PD +NT++
Sbjct: 357 IVNQMVDRGCLPDTTTFNTLI 377
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L+ LCK + MR GI+P Y +I ++ NLR+A+ L
Sbjct: 579 DVVTYGTLINGLCKAGRTQVALKLLRGMRIK-GIRPTPKAYNPVIQSLFRRNNLRDALSL 637
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ G PD Y + +G
Sbjct: 638 FREMTEVGEPPDALTYKIVFRG 659
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC L + + +M ++ G + VTY +ID +C + EA
Sbjct: 438 PDEVTYNILIDHLCSMGKLVNALDLLKEMESN-GCPRSTVTYNTIIDALCKQMRIEEAEE 496
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G +NT++ G
Sbjct: 497 VFDQMDAHGISRSAVTFNTLIDG 519
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T N L+ CK + ++ Q + G +P+ VTY + +C ++ A++
Sbjct: 263 PTRVTVNVLINGYCKMGRVEDALGYI-QKEIADGFEPDQVTYNTFVHCLCQNGHVSHALK 321
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G PD F YNT++
Sbjct: 322 VMDLMLQEGHDPDVFTYNTVI 342
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN L+ L + + + + ++M GI+P++VT LI +C +R A+ +
Sbjct: 159 DTAVYNHLLNVLAEGSRMKLLESVYNEM-TDRGIQPDVVTLNTLIKALCRAHQVRTAVLM 217
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ +S PD + T+M+G+
Sbjct: 218 LEEMSSHAVAPDETTFTTLMQGF 240
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P TYN ++ CK L + ++ M A+ G + ++VTY LI+ +C
Sbjct: 536 MVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTAN-GFEIDVVTYGTLINGLCKAG 594
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A++L+ + G +P YN +++
Sbjct: 595 RTQVALKLLRGMRIKGIRPTPKAYNPVIQ 623
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ CK + + DQM G+ N VTY LID +C ++ ++EA +L
Sbjct: 348 NVITYNTLIDGFCKNKKIEEAEEIFDQMEIQ-GLSRNSVTYNTLIDGLCKSRRVQEAAQL 406
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G KPD F YN+++
Sbjct: 407 MDQMIMEGLKPDKFTYNSML 426
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD FTYN L+ LC L + +M S G N++TY LID C K +
Sbjct: 308 KGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEIS-GCARNVITYNTLIDGFCKNKKIE 366
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + G + YNT++ G
Sbjct: 367 EAEEIFDQMEIQGLSRNSVTYNTLIDG 393
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D YNFL+ L L V N V S GIKP++ T+ ILI +C +R A
Sbjct: 154 LALDTLLYNFLLNVLVDGNKLKLVEN-VHSTMVSKGIKPDVSTFNILIKALCKAHQIRPA 212
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ +S G PD + T+M+G+
Sbjct: 213 ILVMEEMSSYGLVPDEKTFTTLMQGF 238
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LCK R + +DQM G+KP+ TY ++ C ++++A +V
Sbjct: 386 TYNTLIDGLCKSRRVQEAAQLMDQMIME-GLKPDKFTYNSMLTYFCREGDIQKAADIVQT 444
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +G +PD Y T++ G
Sbjct: 445 MTSNGCEPDIVTYGTLIGG 463
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 36/125 (28%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT- 59
+I + L PD FTYN ++ C+ + + V M ++ G +P++VTY LI +C
Sbjct: 410 MIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSN-GCEPDIVTYGTLIGGLCKAG 468
Query: 60 ----------------------------------KNLREAMRLVSALSDSGFKPDCFVYN 85
K +EAMRL + + G PD F Y
Sbjct: 469 RVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYK 528
Query: 86 TIMKG 90
+ +G
Sbjct: 529 IVFRG 533
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ T+N L+K LCK + +++M +S G+ P+ T+T L+
Sbjct: 184 MVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEM-SSYGLVPDEKTFTTLMQGFIEEG 242
Query: 61 NLREAMRLVSALSDSG 76
N+ A R+ + D+G
Sbjct: 243 NMDGAFRVKEQMLDAG 258
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G +P+ TY +LID++C L+EA+ L+ + SG + YNT++ G+
Sbjct: 309 GCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGF 359
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN ++ CK + + N +M I PN+VTYT LID +C + + A++
Sbjct: 316 PDTQSYNIMINGFCKIKKVDEAMNLFKKMHCK-NIIPNVVTYTSLIDGLCKSGKISYALK 374
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
LV + D G PD Y++I+
Sbjct: 375 LVDEMHDRGVPPDIITYSSIL 395
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK---CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+I + + PD++T+N LV CK + TV+ M GIKPN+VTY L+D C
Sbjct: 239 MILENIKPDVYTFNILVDGFCKDGKMKEGKTVF----AMMMKQGIKPNVVTYCSLMDGYC 294
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
K + +A + + ++ G PD YN ++ G+
Sbjct: 295 LVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGF 328
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY L+ LCK ++ VD+M G+ P+++TY+ ++D +C +
Sbjct: 347 KNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDR-GVPPDIITYSSILDALCKNHQVD 405
Query: 64 EAMRLVSALSDS--------GFKPDCFVYNTIMKGY 91
+A+ L++ L D G+ D + Y +++G+
Sbjct: 406 KAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGF 441
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNF---VDQMRASLG---------IKPNLVTYTI 51
K P++ T L+K LC S T+ N V Q RA+L ++PN+V Y
Sbjct: 124 KGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNT 183
Query: 52 LIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ID++C K + EA L S + G PD Y+ ++ G+
Sbjct: 184 IIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGF 223
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ YN ++ +CK + + ++ +M S GI P++VTY+ LI L+
Sbjct: 172 KLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM-VSEGISPDVVTYSALISGFFIVGKLK 230
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L + + KPD + +N ++ G+
Sbjct: 231 DAIDLFNKMILENIKPDVYTFNILVDGF 258
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKP---NLVTYTILIDNV 56
+ +PPDI TY+ ++ LCK +++ + DQ+ L +K ++ YT++I
Sbjct: 382 RGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGF 441
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C EA+ L+S + D+G PD Y I+
Sbjct: 442 CVKGLFNEALALLSKMEDNGRIPDAKTYEIII 473
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ KQ + P++ TY L+ C + + + + M A G+ P+ +Y I+I+ C
Sbjct: 273 MMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTM-AQGGVNPDTQSYNIMINGFCKI 331
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K + EAM L + P+ Y +++ G
Sbjct: 332 KKVDEAMNLFKKMHCKNIIPNVVTYTSLIDG 362
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ Y+ ++ +C ++M G+ PN+VT+ +LID +C +
Sbjct: 267 RGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEM-VDEGVHPNVVTFNVLIDALCKAGKME 325
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ + G PD F YNT++ G+
Sbjct: 326 EANHLLKLMIQRGESPDTFTYNTLIDGF 353
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ LCK R + +++ G++PN++TYT++I +C + L A
Sbjct: 481 PSIQIFNCLIDGLCKARKIEIARELFNRLSHE-GLEPNVITYTVMIHGLCKSGQLENAKD 539
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ +NT+M+G+
Sbjct: 540 LFLGMEEKGCAPNLVTFNTLMRGF 563
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ P + TYN L+ L + + +N +M+ + P TY IL+D +C +L
Sbjct: 407 KEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVH-DLTPESCTYNILLDGLCKNNHLS 465
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L L + F+P ++N ++ G
Sbjct: 466 EAMELFHYLENHDFQPSIQIFNCLIDG 492
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ T+N L+ LCK + N + ++ G P+ TY LID C
Sbjct: 299 MVDEGVHPNVVTFNVLIDALCKAGKMEEA-NHLLKLMIQRGESPDTFTYNTLIDGFCLEG 357
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L ++ G + D YN ++ GY
Sbjct: 358 RIDDARDLFVSMESKGIETDAVSYNVLINGY 388
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD T N L+ C C + + +M G PN VT+T L+ +C + EA
Sbjct: 123 LAPDFITLNILINCYCNLNKVDFGLAVLGEM-LRRGHSPNTVTFTSLVKGLCLGSRISEA 181
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G++P+ Y T++ G
Sbjct: 182 TGLLRKMVRMGYRPNVVTYGTLLNG 206
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + L P++ TY ++ LCK L + M G PNLVT+ L+ C
Sbjct: 509 LSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEK-GCAPNLVTFNTLMRGFCQND 567
Query: 61 NLREAMRLVSALSDSGFKPDC 81
+++ + L+ +++ F PD
Sbjct: 568 EMQKVVELLQEMAEKDFSPDA 588
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD FTYN L+ C + + M S GI+ + V+Y +LI+ C +
Sbjct: 334 MIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSME-SKGIETDAVSYNVLINGYCKSG 392
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA +L + P YNT++ G
Sbjct: 393 RMVEAKKLYREMMCKEIMPTVITYNTLLTG 422
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-----IKPNLVTYTILIDNVCNTKNL 62
P++ TY L+ LC + ++M G IKPNLV Y +ID++C +
Sbjct: 195 PNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLI 254
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G PD Y++I+ G
Sbjct: 255 DKGKELFLEMKGRGISPDVVAYSSIIHG 282
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+ LVK LC ++ + +M +G +PN+VTY L++ +C T N A++
Sbjct: 160 PNTVTFTSLVKGLCLGSRISEATGLLRKM-VRMGYRPNVVTYGTLLNGLCMTGNTMLAVK 218
Query: 68 LVSAL--SDSGF----KPDCFVYNTIM 88
L + + GF KP+ Y TI+
Sbjct: 219 LHEEMLNGNGGFGVTIKPNLVCYCTII 245
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ Y ++ LCK + +M+ GI P++V Y+ +I +C+T A
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGR-GISPDVVAYSSIIHGMCHTGRWEGA 292
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + + D G P+ +N ++
Sbjct: 293 KGLFNEMVDEGVHPNVVTFNVLI 315
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI Q P I ++N L+ + K + V + +M + +G+ P+ +T ILI+ CN
Sbjct: 83 LIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRM-SLIGLAPDFITLNILINCYCNLN 141
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + ++ + G P+ + +++KG
Sbjct: 142 KVDFGLAVLGEMLRRGHSPNTVTFTSLVKG 171
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ LCK + YN +M S G+ PN TYTILI+ N + +
Sbjct: 586 KGVSPNVITYNALIYGLCKENMMDVAYNLFAEME-SKGVSPNKYTYTILINENSNLQYWQ 644
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A++L + D KPD ++ +MK
Sbjct: 645 DALKLYKDMLDREIKPDSCTHSALMK 670
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P + TYN L+ C+ +L D M G+ P++VT+TIL+ C NL
Sbjct: 376 KNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDM-IKHGLCPDVVTFTILVRGFCQMGNLP 434
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + G KPDC Y T + G
Sbjct: 435 MAKELFDEMLSRGLKPDCIAYTTRIVG 461
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD Y + K + + + ++M+A G P+L+TY +LI+ +C
Sbjct: 443 MLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAE-GFPPDLITYNVLINGLCKLG 501
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N +A LV + G PD Y +I+ +
Sbjct: 502 NFDDANELVQKMRLEGIVPDHVTYTSIIHAH 532
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ P I T+N ++ CK + +D MR G PN V+Y +L++ +
Sbjct: 202 QIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRM-FGCDPNDVSYNVLVNGLSGKGEFDR 260
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ +S G K YN +++G+
Sbjct: 261 AKELIEQMSMLGLKVSAHTYNPLIRGF 287
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 34/118 (28%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR----------------ASL---------- 40
PPD+ TYN L+ LCK + V +MR A L
Sbjct: 484 PPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEE 543
Query: 41 --------GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
GI P++VTYT+LI + L A + + D G P+ YN ++ G
Sbjct: 544 VFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYG 601
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ LC+ ++ ++D M + + P+LV+Y LI N EA+
Sbjct: 310 PTVVTYNTIMYSLCRLGRVSDARRYLDVM-VNEDLMPDLVSYNTLIYGYSRLGNFAEALL 368
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L P YNT++ G
Sbjct: 369 LFSELRSKNLVPSVVTYNTLIDG 391
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ +YN L+ + + ++R S + P++VTY LID C T
Sbjct: 338 MVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELR-SKNLVPSVVTYNTLIDGGCRTG 396
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL A + + G PD + +++G+
Sbjct: 397 NLDIAKGMKDDMIKHGLCPDVVTFTILVRGF 427
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L++ CK + +M G P +VTY ++ ++C + +A R +
Sbjct: 279 TYNPLIRGFCKKEMFEEANDLRREMLGR-GALPTVVTYNTIMYSLCRLGRVSDARRYLDV 337
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ + PD YNT++ GY
Sbjct: 338 MVNEDLMPDLVSYNTLIYGY 357
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +YN LV L ++QM + LG+K + TY LI C + EA
Sbjct: 240 PNDVSYNVLVNGLSGKGEFDRAKELIEQM-SMLGLKVSAHTYNPLIRGFCKKEMFEEAND 298
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G P YNTIM
Sbjct: 299 LRREMLGRGALPTVVTYNTIM 319
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TY L+ CLCK ++ V++ D+M G P+++TY LID +C +L
Sbjct: 367 KNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEM-LDRGQPPDVITYNNLIDALCKNGHLD 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + + D +P+ + + ++ G
Sbjct: 426 RAIALFNKMKDQAIRPNVYTFTILLDG 452
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY+ LV C L + +++M I P++ TYTIL+D +C
Sbjct: 224 MVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLE-NINPDIYTYTILVDALCKEG 282
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + + D VY+T+M GY
Sbjct: 283 KVKEAENVLAVMVKACVNLDVVVYSTLMDGY 313
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TYN L+ LCK L ++M+ I+PN+ T+TIL+D +C L+ A+
Sbjct: 405 PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQ-AIRPNVYTFTILLDGLCKVGRLKNAL 463
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L G+ + Y ++ G
Sbjct: 464 EFFQDLLTKGYCLNVRTYTVMING 487
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ ++ LCK + + N +++ + P+ VTYT LID +C + +
Sbjct: 336 PDVHCYSIMINGLCKIKRVDEALNLFEEIHQK-NMVPDTVTYTSLIDCLCKSGRISYVWD 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + D G PD YN ++
Sbjct: 395 LFDEMLDRGQPPDVITYNNLIDA 417
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
++ PD FT N ++ C C + ++ V ++ LG +PN +T L+ +C +
Sbjct: 86 LSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKI-LKLGYQPNTITLNTLMKGLCLEGKV 144
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA+R + GF+ Y ++ G
Sbjct: 145 KEALRFHDKVLAQGFRLSGISYGILING 172
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDI+TY LV LCK + N + M + + ++V Y+ L+D C
Sbjct: 259 MVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKAC-VNLDVVVYSTLMDGYCLVN 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A R+ ++ G PD Y+ ++ G
Sbjct: 318 EVNNAKRVFYTMTQMGVTPDVHCYSIMING 347
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y+ ++ LCK + Y+ +M GI P++VTY+IL+ C L A+
Sbjct: 196 PNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGK-GISPDVVTYSILVSGFCIVGQLNRAID 254
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + PD + Y ++
Sbjct: 255 LLNEMVLENINPDIYTYTILVDA 277
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+++T+ L+ LCK L F + G N+ TYT++I+ +C L
Sbjct: 437 QAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTK-GYCLNVRTYTVMINGLCKEGLLD 495
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L S + D+G D + +++ +
Sbjct: 496 EALALQSRMEDNGCISDAVTFEIMIRAF 523
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T N L+K LC + F D++ A G + + ++Y ILI+ VC R A+R
Sbjct: 126 PNTITLNTLMKGLCLEGKVKEALRFHDKVLAQ-GFRLSGISYGILINGVCKIGETRAAIR 184
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +P+ +Y+ I+
Sbjct: 185 LLRRIERWSIRPNVVIYSMII 205
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ +CK + ++ I+PN+V Y+++ID +C + EA L +
Sbjct: 165 SYGILINGVCKIGETRAAIRLLRRIE-RWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTE 223
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G PD Y+ ++ G+
Sbjct: 224 MVGKGISPDVVTYSILVSGF 243
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P F +N ++ L + T + QM S ++P+ T I+I+ C+ + A
Sbjct: 56 PHTFHFNKILISLVNVKRYPTAISLYKQMELS-EVEPDYFTLNIIINCFCHFGQVVLAFS 114
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
VS + G++P+ NT+MKG
Sbjct: 115 GVSKILKLGYQPNTITLNTLMKG 137
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+I TYN L+ C L + D M S G P++VTY LI C +K
Sbjct: 816 MIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLM-VSKGCFPDVVTYNTLITGFCKSK 874
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L ++ G D F YNT++ GY
Sbjct: 875 RVEDGMKLFCEMTHQGLVGDAFTYNTLIHGY 905
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C + + +M LG +P++VT L++ C +EA
Sbjct: 646 ISHDLYSFTILIHCFCRCSRFSLALALLGKM-MKLGFQPSIVTLGSLLNGFCQGNRFQEA 704
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV ++++ G +P+ +YNT++ G
Sbjct: 705 VSLVDSMAELGLEPNVVIYNTVING 729
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ TYN L+ LC L D M AS G PN+VTY LI+ C ++
Sbjct: 267 MLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM-ASKGCFPNVVTYNTLINGFCKSR 325
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L + G D F YNT++ GY
Sbjct: 326 RVEDGMKLFQRMYREGLVGDTFTYNTLIHGY 356
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + + +M LG P++VT+ L+ C + +A
Sbjct: 96 ISHDLYSFTILIHCFCRCSRLSLALSILGKM-MKLGYDPSIVTFGSLLHGFCLRNRIHDA 154
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
LV+++ SG++P+ VYNT++
Sbjct: 155 FSLVASMVKSGYEPNVVVYNTLI 177
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ + L D FTYN L+ C+ L ++M G+ P++VTY IL+D +CN
Sbjct: 886 MTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM-VDCGVPPDIVTYNILLDCLCNNG 944
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +V L + D YN I++G
Sbjct: 945 KIEKALVMVEDLQKNQMDVDIITYNIIIQG 974
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPDI TYN L+ CLC + V+ ++ + + +++TY I+I +C ++EA
Sbjct: 926 VPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQ-MDVDIITYNIIIQGMCRNDKVKEA 984
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +L+ G K D Y T++ G
Sbjct: 985 WCLFRSLTRKGVKLDAIAYITMISG 1009
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I T L+ C+ + VD M A LG++PN+V Y +I+ +C ++L A+
Sbjct: 683 PSIVTLGSLLNGFCQGNRFQEAVSLVDSM-AELGLEPNVVIYNTVINGLCKNRDLNNALE 741
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G D YNT++ G
Sbjct: 742 IFYGMEKKGIVADAVTYNTLISG 764
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ YN L+ CLCK + +++M + +LVTY L+ +C + R+A
Sbjct: 167 EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAA 226
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R++ ++ PD F + ++ +
Sbjct: 227 RILRDMTKRRINPDVFTFTALIDAF 251
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+FT+ L+ K +L QM S I PN VTY LI+ +C L
Sbjct: 235 RRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQS-SIGPNTVTYNSLINGLCMHGRLY 293
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + ++ G P+ YNT++ G+
Sbjct: 294 HAKKTFDLMASKGCFPNVVTYNTLINGF 321
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D TYN L+ LC T + M I PN++ +T LID NL
Sbjct: 749 KGIVADAVTYNTLISGLCNSGRWTDAARLLRDM-VKRKIDPNVIFFTALIDTFVKEGNLL 807
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + P+ YN+++ G+
Sbjct: 808 EAKNLYKEMIRRSVHPNILTYNSLINGF 835
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L D+ TYN L+ LC + M I P++ T+T LID NL E
Sbjct: 201 RLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRR-INPDVFTFTALIDAFVKQGNLDE 259
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + S P+ YN+++ G
Sbjct: 260 AQELYKQMLQSSIGPNTVTYNSLING 285
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ DI TYN +++ +C+ + + + G+K + + Y +I +C RE
Sbjct: 960 QMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRK-GVKLDAIAYITMISGLCRNGLRRE 1018
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + + + GF P +Y+ ++ +
Sbjct: 1019 ADKLCTRMKEDGFMPSERIYDETLRDH 1045
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I T+ L+ C + ++ V M S G +PN+V Y LID +C ++ A+
Sbjct: 133 PSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS-GYEPNVVVYNTLIDCLCKNGDVNIALE 191
Query: 68 LVSALSDSG-FKPDCFVYNTIMKG 90
L++ + G D YNT++ G
Sbjct: 192 LLNEMEKKGRLAADLVTYNTLLTG 215
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TYN L+ CK + + +M G+ + TY LI C
Sbjct: 851 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM-THQGLVGDAFTYNTLIHGYCQAG 909
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A ++ + + D G PD YN ++
Sbjct: 910 KLNVAQKVFNRMVDCGVPPDIVTYNILL 937
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ YN ++ LCK R L M GI + VTY LI +CN+ +A
Sbjct: 716 LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKK-GIVADAVTYNTLISGLCNSGRWTDA 774
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
RL+ + P+ + ++
Sbjct: 775 ARLLRDMVKRKIDPNVIFFTALI 797
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKPNLVTYTILIDNVCNTKNLRE 64
PDI T+ L+ LC + + + MR+ LGI V Y I+I +C + E
Sbjct: 379 PDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGI----VAYNIMIHGLCKADKVEE 434
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L L G KPD Y ++ G
Sbjct: 435 AWELFCRLPVEGVKPDARTYTIMILG 460
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK R + +M G+ + TY LI C LR A
Sbjct: 309 PNVVTYNTLINGFCKSRRVEDGMKLFQRMYRE-GLVGDTFTYNTLIHGYCQVGKLRVAKD 367
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S + G PD + ++ G
Sbjct: 368 IFSWMVSCGVTPDIITHCILLHG 390
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I YN ++ LCK + + ++ G+KP+ TYTI+I +C REA L
Sbjct: 416 IVAYNIMIHGLCKADKVEEAWELFCRLPVE-GVKPDARTYTIMILGLCKNGPRREADELF 474
Query: 70 SALSDSG 76
+ + G
Sbjct: 475 RRMKEDG 481
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++P PD +TY L+ LC+ +++ +M G ++VTYT LI +
Sbjct: 178 IFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQK-GFSASVVTYTSLIHGL 236
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + NL EA+ L+ + + +P+ F Y+++M G
Sbjct: 237 CQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDG 270
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++FTY+ L+ LCK + ++ M + PN+VTY+ LI+ +C + LREA
Sbjct: 257 IEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHL-PNMVTYSTLINGLCKERKLREA 315
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ + G KP+ +Y I+ G
Sbjct: 316 VEILDRMRIQGLKPNAGLYGKIISG 340
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P + + N L+K LCK + + Q + G +P+ TY LI+ +C N+ EA
Sbjct: 151 IPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEA 210
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + GF Y +++ G
Sbjct: 211 KELFKEMEQKGFSASVVTYTSLIHG 235
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK R L +D+MR G+KPN Y +I +C + +EA
Sbjct: 294 PNMVTYSTLINGLCKERKLREAVEILDRMRIQ-GLKPNAGLYGKIISGLCAAGSYQEAAN 352
Query: 68 LVSALSDSGFKPD 80
+ + G P+
Sbjct: 353 FIDEMVLGGISPN 365
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC-NTKNLR 63
QL P Y ++ L + + F +MR LGI ++V+ ILI +C N + +
Sbjct: 115 QLRPTQKAYLTILDILVEENHVKRAIGFYREMR-ELGIPSSVVSLNILIKALCKNKETVD 173
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R+ + + G +PD + Y T++ G
Sbjct: 174 SALRIFQEMPNRGCQPDSYTYGTLING 200
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFT+N L+ CK + + +MR SLG P++V+Y L+ +C+ EA R
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLFLEMR-SLGCPPDVVSYNTLMRGMCSKGKPHEAQR 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + SG PD YN ++ GY
Sbjct: 284 LLREMIRSGVGPDIVSYNILIDGY 307
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +YN L++ +C + +M S G+ P++V+Y ILID + L A+
Sbjct: 259 PPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRS-GVGPDIVSYNILIDGYSKSGALDHAI 317
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L + SG +PD F Y+TI+
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTII 339
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F+Y+ L+ LC+ + + +++M G +PN+VTY L+ +C L+EA+
Sbjct: 85 PNVFSYSILIAGLCRGQKVDEAAELLNEMIDG-GHQPNVVTYGSLLSGLCKMGKLKEAVD 143
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L S + G PD VYN ++ G+
Sbjct: 144 LFSRMVYRGCPPDGVVYNVLIDGF 167
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TY +L++ LC+ + + M A+ G PN+ +Y+ILI +C + + EA
Sbjct: 50 PNTYTYGYLLRSLCQAQRFEEARSVFRGM-AAQGCSPNVFSYSILIAGLCRGQKVDEAAE 108
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + D G +P+ Y +++ G
Sbjct: 109 LLNEMIDGGHQPNVVTYGSLLSG 131
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P +FTYN L+ + V + F D +R G PN+ T+ L+D C ++ EA
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ--GCVPNIFTFNNLLDGFCKMGDMVEAH 247
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + G PD YNT+M+G
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLMRG 271
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK L + +M G P+ V Y +LID ++ EA R
Sbjct: 120 PNVVTYGSLLSGLCKMGKLKEAVDLFSRM-VYRGCPPDGVVYNVLIDGFSKKGDMGEAYR 178
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P F YN+++ G+
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGF 202
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+YN+L++ L K VY + M + G PN TY L+ ++C + EA +
Sbjct: 18 LSYNYLLEVLAKSGRCDHVYGTYNDMLGA-GCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
++ G P+ F Y+ ++ G
Sbjct: 77 GMAAQGCSPNVFSYSILIAG 96
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD F+Y+ ++ CLC+ + + M A+ G P+ L+ +C + L E+
Sbjct: 328 LEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN-GSAPDAAVVIPLVIGLCRGERLTES 386
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L A+ P YN +M
Sbjct: 387 CELFQAMVKFECVPLIPEYNLLM 409
Score = 34.7 bits (78), Expect = 7.7, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN L+ K +L ++ S G++P+ +Y+ +ID +C + A
Sbjct: 295 PDIVSYNILIDGYSKSGALDHAIKLFYEIPKS-GLEPDAFSYSTIIDCLCRAGKVGAAFV 353
Query: 68 LVSALSDSGFKPDCFV 83
+ + +G PD V
Sbjct: 354 VFKDMIANGSAPDAAV 369
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+++YN ++ C +D+M + P++ T+ ILID +C + EA +
Sbjct: 244 DVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNV 303
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
V+ + G+KPD YN +M GY
Sbjct: 304 VAVMIKRGWKPDIVSYNALMNGY 326
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++T+N L+ LCK ++ YN V M G KP++V+Y L++ C + ++ EA +
Sbjct: 279 PDVYTFNILIDGLCKLGRVSEAYNVVAVM-IKRGWKPDIVSYNALMNGYCLSGSVGEAKQ 337
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + P+ Y T++ GY
Sbjct: 338 VFDKMVERTALPNVISYCTLINGY 361
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TYN L+ L K ++ V+ MRAS G +L+TY +L+D+ +
Sbjct: 380 KNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRAS-GQPADLITYNVLLDDYFKHEKFD 438
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L + + G P+ YN ++ G
Sbjct: 439 KALALFQHIIEIGISPNIRTYNILLDG 465
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PDI +YN L+ C S+ D+M + PN+++Y LI+ C +
Sbjct: 307 MIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTAL-PNVISYCTLINGYCKVR 365
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM L++ + + PD YN ++ G
Sbjct: 366 MVDEAMVLLTEMHNKNLVPDTVTYNCLLDG 395
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+I TYN L+ LCK L + Q+ ++ G +PN+ TY I+I +C L EA
Sbjct: 452 ISPNIRTYNILLDGLCKSGRLKYAKE-IFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEA 510
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + ++ + P+ ++TI++
Sbjct: 511 EALLYKMVNNNYLPNYITFDTIVRA 535
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y ++ LCK +M+ + + PNL+ Y +ID +C + EA L
Sbjct: 174 DEVCYGTIINGLCKIGKTRDAIQMFPKMK-KIRVYPNLIMYNTVIDGLCKQGLVDEACGL 232
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + ++G + D + YN+++ G+
Sbjct: 233 CTEMVENGIELDVYSYNSMIHGF 255
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N L+ L K + V + +++ IKP+L+T++ILI+ + A L+ +
Sbjct: 72 FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131
Query: 73 SDSGFKPDCFVYNTIMKG 90
GF+ D + T+MKG
Sbjct: 132 LKMGFQIDVRILTTLMKG 149
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y L+ CK R + + +M + P+ VTY L+D + +
Sbjct: 349 PNVISYCTLINGYCKVRMVDEAMVLLTEMHNK-NLVPDTVTYNCLLDGLSKSGRSLYEWD 407
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV A+ SG D YN ++ Y
Sbjct: 408 LVEAMRASGQPADLITYNVLLDDY 431
>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
Length = 574
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TYN L+ R +V +D+M+ G+K ++VTY +LI +C +R+A
Sbjct: 397 ISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEK-GVKADVVTYNVLIGALCCKGEVRKA 455
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L+ + + G +P YNTI+ G+
Sbjct: 456 VKLLDEMVEVGLEPKHVAYNTIINGF 481
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T+N L+ CK ++T +MR GI N+VTY L+ +C
Sbjct: 252 MIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQ-GIPANVVTYNSLVSGLCREG 310
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++++LV + + G N+++ G+
Sbjct: 311 KVEDSIKLVEEMEELGLACILSTMNSVLNGF 341
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVCNTKNLRE 64
P + TYN L+ CK + +Y+ VD + + GI P++VT+ +LI+ C N+
Sbjct: 221 PSVATYNTLIDGYCKRGQVGKMYH-VDALLKEMIQAGISPDVVTFNVLINGYCKEPNITA 279
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+++ + G + YN+++ G
Sbjct: 280 AIKVFQEMRQQGIPANVVTYNSLVSG 305
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT+N ++ CK L + + A G+ P++ TY LID C + +
Sbjct: 186 PDLFTFNIVISGFCKTGQLRKAGDVAKNISA-WGVAPSVATYNTLIDGYCKRGQVGKMYH 244
Query: 68 ---LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD +N ++ GY
Sbjct: 245 VDALLKEMIQAGISPDVVTFNVLINGY 271
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P ++ TYN LV LC+ + V++M LG+ L T +++ C + EA
Sbjct: 292 IPANVVTYNSLVSGLCREGKVEDSIKLVEEME-ELGLACILSTMNSVLNGFCKKGMMVEA 350
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
V ++ G KP+ YNT++ GY
Sbjct: 351 EGWVDGIAQRGMKPNVITYNTLVDGY 376
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ P+L T+ I+I C T LR+A + +S G P YNT++ GY
Sbjct: 184 VSPDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGY 233
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TYN L+ LC + +D+M +G++P V Y +I+ C + +
Sbjct: 430 KGVKADVVTYNVLIGALCCKGEVRKAVKLLDEM-VEVGLEPKHVAYNTIINGFCEKGDAQ 488
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
A + + + + YN +K
Sbjct: 489 GAHEIRLRMEKRKKRANVVTYNVFLK 514
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++ TYN LV + + A GI PN+ TY LI +++ R
Sbjct: 360 RGMKPNVITYNTLVDGYRRLGKMKEAAA-AKDAMAGKGISPNVKTYNCLITGFTTSRDWR 418
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
L+ + + G K D YN ++
Sbjct: 419 SVSGLLDEMKEKGVKADVVTYNVLI 443
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N ++ CK + +VD + A G+KPN++TY L+D ++EA A
Sbjct: 333 TMNSVLNGFCKKGMMVEAEGWVDGI-AQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDA 391
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
++ G P+ YN ++ G+
Sbjct: 392 MAGKGISPNVKTYNCLITGF 411
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC L +D+M P+++TYTILI+ C + +A
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM-LQRDCYPDVITYTILIEATCRDSGVGQA 258
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M+L+ + D G PD YN ++ G
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNG 283
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ C+ + +D+MR G P++VTY +L++ +C L EA++
Sbjct: 237 PDVITYTILIEATCRDSGVGQAMKLLDEMR-DRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + SG +P+ +N I++
Sbjct: 296 FLNDMPSSGCQPNVITHNIILR 317
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV +CK L F++ M +S G +PN++T+ I++ ++C+T +A +
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIILRSMCSTGRWMDAEK 330
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + GF P +N ++
Sbjct: 331 LLADMLRKGFSPSVVTFNILI 351
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK + ++Q+ +S G P L+TY +ID + +A++
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQL-SSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + KPD Y++++ G
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGG 493
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I +++P P+ +YN L+ CK + + ++++M S G P++VTY ++ +
Sbjct: 366 ILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM-VSRGCYPDIVTYNTMLTAL 424
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + +A+ +++ LS G P YNT++ G
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K P + TYN ++ L K +D+MRA +KP+ +TY+ L+ +
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK-DLKPDTITYSSLVGGLSREG 498
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++ G +P+ +N+IM G
Sbjct: 499 KVDEAIKFFHEFERMGVRPNAVTFNSIMLG 528
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ CK + + +D+M S P++VTY ++ ++C++ L++AM
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAME 225
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + PD Y +++
Sbjct: 226 VLDRMLQRDCYPDVITYTILIE 247
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + T+N L+ LC+ L + +++M G +PN ++Y L+ C K
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM-PKHGCQPNSLSYNPLLHGFCKEK 393
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YNT++
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTML 421
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ T+N +++ +C R + D +R G P++VT+ ILI+ +C L A+
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRK--GFSPSVVTFNILINFLCRKGLLGRAI 364
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G +P+ YN ++ G+
Sbjct: 365 DILEKMPKHGCQPNSLSYNPLLHGF 389
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ LV L + + F + +G++PN VT+ ++ +C T+
Sbjct: 478 KDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE-RMGVRPNAVTFNSIMLGLCKTRQTD 536
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + + G KP Y +++G
Sbjct: 537 RAIDFLVYMINRGCKPTETSYTILIEG 563
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ + N L + L + L + F++ M G P+++ T LI C R+A ++
Sbjct: 102 DVESNNHL-RQLVRTGELEEGFKFLENM-VYHGNVPDIIPCTTLIRGFCRMGKTRKAAKI 159
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ L SG PD YN ++ GY
Sbjct: 160 LEVLEGSGAVPDVITYNVMISGY 182
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N ++ LCK R +F+ M + G KP +YTILI+ + +EA+
Sbjct: 517 PNAVTFNSIMLGLCKTRQTDRAIDFLVYM-INRGCKPTETSYTILIEGLAYEGMAKEALE 575
Query: 68 LVSALSDSGF 77
L++ L + G
Sbjct: 576 LLNELCNKGL 585
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +T+N L+K C L ++MR G+KP++VTY +I +C + +A
Sbjct: 390 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH-GVKPDVVTYRTVIAALCRIGKMDDA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + D G PD + YN +++G+
Sbjct: 449 MEKFNQMIDQGVAPDKYAYNCLIQGF 474
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------RASLG- 41
++ + +PPD+ TYN +V LCK R++ F+ QM +S G
Sbjct: 245 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 304
Query: 42 ---------------IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
I P++VT ++L+ ++C ++EA + ++ G PD F YN
Sbjct: 305 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 364
Query: 87 IMKGY 91
++ GY
Sbjct: 365 MLNGY 369
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI ++ ++ LCK + N D + ++G+ P+ V Y++L+D C + +A+R+
Sbjct: 498 DIVFFSSIINNLCKLGRVMDAQNIFD-LTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRV 556
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
A+ +G +P+ VY T++ GY
Sbjct: 557 FDAMVSAGIEPNVVVYCTLVNGY 579
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y+ L+ C + D M S GI+PN+V Y L++ C + E
Sbjct: 530 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAM-VSAGIEPNVVVYCTLVNGYCKIGRIDEG 588
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KP +Y+ I+ G
Sbjct: 589 LSLFREMLQRGIKPSTILYSIIIDG 613
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K PD+F+YN ++ L + + D M GI P+ T+ +LI N
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDFYTFNVLIKAYANCG 408
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +AM + + + D G KPD Y T++
Sbjct: 409 MLDKAMIIFNEMRDHGVKPDVVTYRTVI 436
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD + YN L++ C SL + ++ + G+ ++V ++ +I+N+C
Sbjct: 455 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLG 513
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + G PD VY+ +M GY
Sbjct: 514 RVMDAQNIFDLTVNVGLHPDAVVYSMLMDGY 544
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI-KPNLVTYTILIDNVCNTKNLREAM 66
PD+F+Y+ L+K LC + + M + PN+V Y +ID ++ +A
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 239
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD YN+++
Sbjct: 240 DLFKEMVQRGIPPDLVTYNSVVHA 263
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ T + L+ LCK + + D M A G P++ +Y I+++
Sbjct: 311 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMKGQNPDVFSYNIMLNGY 369
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + L + G PD + +N ++K Y
Sbjct: 370 ATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 404
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L +I N L++ C+ + + + LG P++ +Y+IL+ ++C+
Sbjct: 137 LLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 196
Query: 61 NLREAMRLVSALSDSGF--KPDCFVYNTIMKGY 91
+A L+ +++ G P+ YNT++ G+
Sbjct: 197 KSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGF 229
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TYN +++ L K R ++RA + +K N++T +ID + T+ + EA L
Sbjct: 638 DICTYNIVLRGLFKNRCFDEAIFLFKELRA-MNVKINIITLNTMIDGMFQTRRVEEAKDL 696
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+++S S P Y+ ++
Sbjct: 697 FASISRSRLVPSVVTYSIMI 716
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ Y LV CK + + +M GIKP+ + Y+I+ID +
Sbjct: 560 MVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM-LQRGIKPSTILYSIIIDGLFQAG 618
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++SG D YN +++G
Sbjct: 619 RTVPAKVKFHEMTESGIAMDICTYNIVLRG 648
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ K + + +M GI P+LVTY ++ +C + + +A
Sbjct: 217 PNVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDLVTYNSVVHALCKARAMDKAEA 275
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + P+ + YN ++ GY
Sbjct: 276 FLRQMVNKRVLPNNWTYNNLIYGY 299
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TY L+ C + F Q+ + G++ N++ L++ C K EA
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRT-GLRVNIIIANHLLEGFCEAKRTDEA 165
Query: 66 MR-LVSALSDSGFKPDCFVYNTIMK 89
+ L+ + G PD F Y+ ++K
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLK 190
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F+Q+ PD FT + K CK + + FV++M +G++ NLV Y +++
Sbjct: 230 VFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEM-TKMGVEVNLVAYHAVMNGY 288
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C +A R++ +L GF P+ Y ++KGY
Sbjct: 289 CEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGY 323
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I TYN L+ LCK L+ + ++ GI PN +TY LID C + EA
Sbjct: 791 LTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTK-GISPNAITYNTLIDKHCKDGYITEA 849
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G P F Y+ ++ G
Sbjct: 850 FKLKQRMIEEGIHPTVFTYSILING 874
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + P+ TYN L+ CK +T + +M GI P + TY+ILI+ +C
Sbjct: 821 LWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEE-GIHPTVFTYSILINGLCTQG 879
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA++L+ + ++ P+ Y T+++GY
Sbjct: 880 YMEEAIKLLDQMIENNVDPNYVTYWTLIQGY 910
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +L ++F YN ++ CK + +N + +M +G++P+ +Y L+D C
Sbjct: 375 MVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEM-TGVGVRPDTYSYNSLVDGYCKKG 433
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + +GF YN ++KG+
Sbjct: 434 LMNKAFETYNTMLRNGFAATTLTYNALLKGF 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ P+I TY LVK C +++ V ++R + + + + +I+ C +
Sbjct: 307 RGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRME 366
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A RL++ + DS + + FVYN ++ GY
Sbjct: 367 DAARLLNEMVDSRLQVNLFVYNIMINGY 394
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K D FTY+ L+ + ++ D M S+G+ PN+VTY LI +C + L
Sbjct: 754 KGFVADNFTYSSLIHGCSASGFVDVAFDLRDTM-LSVGLTPNIVTYNSLIYGLCKSGELS 812
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L L G P+ YNT++ +
Sbjct: 813 RAVSLFKKLWTKGISPNAITYNTLIDKH 840
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + T+N ++ LCK + VD+M+ P+++TY L C ++
Sbjct: 518 RGLAKNTTTFNTVINGLCKIERMPEAEELVDKMK-QWRCPPDIITYRTLFSGYCKIGDMD 576
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A R+++ L + GF P +N+++ G+
Sbjct: 577 RASRILNELENLGFAPTIEFFNSLITGH 604
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
KQL D + ++ C+ + +++M S ++ NL Y I+I+ C +
Sbjct: 343 KQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSR-LQVNLFVYNIMINGYCKLGRMV 401
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ ++ G +PD + YN+++ GY
Sbjct: 402 EAHNILHEMTGVGVRPDTYSYNSLVDGY 429
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPDI TY L CK + ++++ +LG P + + LI K +
Sbjct: 556 PPDIITYRTLFSGYCKIGDMDRASRILNELE-NLGFAPTIEFFNSLITGHFIAKQHGKVN 614
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ +S+ G P+ Y ++ G+
Sbjct: 615 DILFEMSNRGLSPNTVAYGALIAGW 639
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++YN LV CK + + + M + G +TY L+ C+ ++ +A+R
Sbjct: 417 PDTYSYNSLVDGYCKKGLMNKAFETYNTMLRN-GFAATTLTYNALLKGFCSLGSIDDALR 475
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G P+ +T++ G+
Sbjct: 476 LWFLMLKKGIAPNEISCSTLLDGF 499
>gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like [Vitis vinifera]
Length = 580
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP++FTYN L+ K ++ ++ +M + GI P++VTY +LI CN + A
Sbjct: 445 IPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLN-GIYPDVVTYNLLIGAACNFGRIHFA 503
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+RL + G++PD Y +++G+
Sbjct: 504 LRLYDEMLRRGYEPDIITYTELIRGF 529
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD+ T+N+LV LCK L N V +M +G PN T+ I C
Sbjct: 157 MIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREM-LEIGPSPNCATFNTFIKGYCLNN 215
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +A+ L S +++SG P+ YN ++
Sbjct: 216 NVDKALYLFSTMANSGIGPNKVTYNILIHA 245
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L+ C + + + Y + +M G+ P++ TY LI C NL EA +
Sbjct: 308 DVVAYNVLIHGFCLIQDMNSAYRYFCEMFKR-GLLPDIFTYNTLISGFCKIGNLDEACYI 366
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+S G PD Y I++G
Sbjct: 367 HGVMSKMGAAPDLISYKMIIQG 388
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDIFTYN L+ CK +L ++ + + +G P+L++Y ++I +C ++
Sbjct: 338 RGLLPDIFTYNTLISGFCKIGNLDEAC-YIHGVMSKMGAAPDLISYKMIIQGLCIHGDVI 396
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + + ++ P+ ++N ++ G+
Sbjct: 397 RANQFLVCMLENLMVPEPLIWNVVIDGH 424
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ TYN L+ C + D+M G +P+++TYT LI C
Sbjct: 475 MLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRR-GYEPDIITYTELIRGFCIRG 533
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ EA L++ L SG D + +++ Y
Sbjct: 534 HVMEAEELLAKLQRSGLSIDHAPFQILIQKY 564
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G+ P+++T+ L++ +C +L +A LV + + G P+C +NT +KGY
Sbjct: 161 GVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGY 211
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 9 DIFTYN-FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
DI T F+ CL K + + ++ + ++ G + ++V Y +LI C +++ A R
Sbjct: 273 DIITSTIFMDGCLKKGDMVQALVHWDEMLQR--GTQIDVVAYNVLIHGFCLIQDMNSAYR 330
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G PD F YNT++ G+
Sbjct: 331 YFCEMFKRGLLPDIFTYNTLISGF 354
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N ++ + L+ + DQM S GI PN+ TY LI N+ +A
Sbjct: 412 PEPLIWNVVIDGHGRHGDLSNALSIRDQM-VSFGIPPNVFTYNALIHAQIKGGNIVDAHS 470
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +G PD YN ++
Sbjct: 471 IKKEMLLNGIYPDVVTYNLLI 491
>gi|297800292|ref|XP_002868030.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
lyrata]
gi|297313866|gb|EFH44289.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
lyrata]
Length = 463
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L L P TYN L+ LCKC + +M++ KP L+TY ILI+ +C ++
Sbjct: 145 LQLAGLSPGPDTYNVLLDALCKCGYIDNALELFKEMQSKF--KPELMTYNILINGLCKSR 202
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A +++ L SG+ P+ Y TI+K Y
Sbjct: 203 RVGTAKWMLTELKRSGYTPNAVTYTTILKLY 233
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 2 IFKQLP----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+FK++ P++ TYN L+ LCK R + T + +++ S G PN VTYT ++
Sbjct: 176 LFKEMQSKFKPELMTYNILINGLCKSRRVGTAKWMLTELKRS-GYTPNAVTYTTILKLYI 234
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVY 84
T+ +R ++L + G+ D + Y
Sbjct: 235 KTRRIRRGLQLFLEMKREGYTYDGYAY 261
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ C+ + Y +MR + GI+P++ TY LI L
Sbjct: 44 VAPDVVTYNTLISGYCRFVGIEEGYAVTLRMRDA-GIRPDVATYNSLIAGAARRLMLDRV 102
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ L + + G PD + YNT+M
Sbjct: 103 LYLFDEMLEWGIYPDLWSYNTLM 125
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 14 NFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
N V LCK R L + D +R LG+ P++VTY LI C + E + +
Sbjct: 17 NICVDSLCKFRKLEKAETLIIDGIR--LGVAPDVVTYNTLISGYCRFVGIEEGYAVTLRM 74
Query: 73 SDSGFKPDCFVYNTIMKG 90
D+G +PD YN+++ G
Sbjct: 75 RDAGIRPDVATYNSLIAG 92
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+++YN L+ C K + + + G+ P TY +L+D +C + A+
Sbjct: 116 PDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLSPGPDTYNVLLDALCKCGYIDNALE 175
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + S FKP+ YN ++ G
Sbjct: 176 LFKEMQ-SKFKPELMTYNILING 197
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TYN L++ LC +D+M + P++VTYTIL++ C ++AM+
Sbjct: 156 PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCV-PDVVTYTILLEATCKRSGYKQAMK 214
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D G PD YN ++ G
Sbjct: 215 LLDEMRDKGCTPDIVTYNVVVNG 237
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ TY L++ CK +D+MR G P++VTY ++++ +C
Sbjct: 184 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDK-GCTPDIVTYNVVVNGICQEG 242
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + L G +P+ YN ++KG
Sbjct: 243 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKG 272
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+ +Q+P P+ +YN L+ CK + + F+D M S G P++V+Y L+ +
Sbjct: 320 VLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM-VSRGCYPDIVSYNTLLTAL 378
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + + A+ L+ L D G P YNT++ G
Sbjct: 379 CRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 412
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP++ T+N L+ LC+ + ++Q+ G PN ++Y L+ C K +
Sbjct: 292 KGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI-PKYGCTPNSLSYNPLLHAFCKQKKMD 350
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + + G PD YNT++
Sbjct: 351 KAMAFLDLMVSRGCYPDIVSYNTLL 375
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + +YN ++ L K +++M S G++P+++TY+ + +C +
Sbjct: 397 KGCAPVLISYNTVIDGLTKAGKTKEALELLNEM-VSKGLQPDIITYSTIAAGLCREDRIE 455
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R + D G +P+ +YN I+ G
Sbjct: 456 DAIRAFGKVQDMGIRPNTVLYNAIILG 482
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN +V +C+ + F+ + S G +PN V+Y I++ +C +
Sbjct: 222 KGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNL-PSYGCEPNTVSYNIVLKGLCTAERWE 280
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ + G P+ +N ++
Sbjct: 281 DAEELMGEMGQKGCPPNVVTFNMLI 305
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-----SLGIKPNLVTYTILIDN 55
++ K L PDI TY+ + LC+ + D +RA +GI+PN V Y +I
Sbjct: 429 MVSKGLQPDIITYSTIAAGLCREDRIE------DAIRAFGKVQDMGIRPNTVLYNAIILG 482
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C + A+ L + + +G P+ Y +++G
Sbjct: 483 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEG 517
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 3 FKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
K LP P+ +YN ++K LC + +M G PN+VT+ +LI +C
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM-GQKGCPPNVVTFNMLISFLC 309
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ ++ + G P+ YN ++ +
Sbjct: 310 RKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAF 343
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN ++ LCK R + + M + G PN TYTILI+ + ++EA
Sbjct: 471 PNTVLYNAIILGLCKRRETHSAIDLFAYMIGN-GCMPNESTYTILIEGLAYEGLIKEARD 529
Query: 68 LVSALSDSG 76
L+ L G
Sbjct: 530 LLDELCSRG 538
>gi|68566156|sp|P0C043.1|PP318_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At4g17915
Length = 463
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ LCKC + +M++ KP L+TY ILI+ +C ++ + A
Sbjct: 150 LNPGPDTYNVLLDALCKCGYIDNALELFKEMQSRF--KPELMTYNILINGLCKSRRVGTA 207
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ L SG+ P+ Y TI+K Y
Sbjct: 208 KWMLTELKKSGYTPNAVTYTTILKLY 233
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 14 NFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
N V LCK R L + + D +R LG+ P++VTY LI C + EA + +
Sbjct: 17 NICVDSLCKFRKLEKAESLIIDGIR--LGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRM 74
Query: 73 SDSGFKPDCFVYNTIMKG 90
D+G +PD YN+++ G
Sbjct: 75 RDAGIRPDVATYNSLIAG 92
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 2 IFKQL----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+FK++ P++ TYN L+ LCK R + T + +++ S G PN VTYT ++
Sbjct: 176 LFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKS-GYTPNAVTYTTILKLYF 234
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
T+ +R ++L + G+ D + Y ++
Sbjct: 235 KTRRIRRGLQLFLEMKREGYTYDGYAYFAVV 265
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C+ + Y +MR + GI+P++ TY LI L +
Sbjct: 46 PDVVTYNTLISGYCRFVGIEEAYAVTRRMRDA-GIRPDVATYNSLIAGAARRLMLDHVLY 104
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD + YNT+M Y
Sbjct: 105 LFDEMLEWGIYPDLWSYNTLMCCY 128
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+++YN L+ C K + + + G+ P TY +L+D +C + A+
Sbjct: 116 PDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALE 175
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + S FKP+ YN ++ G
Sbjct: 176 LFKEMQ-SRFKPELMTYNILING 197
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TY+ L+ CK +D+MR S G +P++VTY +LI+ +C+
Sbjct: 186 MLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMR-SKGCEPDIVTYNVLINAMCSQG 244
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++ EA++++++L G KPD Y ++K
Sbjct: 245 DVGEALKVLNSLPSYGCKPDAVTYTPVLK 273
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L++ LC + D M G P++VTY+IL+D C ++A+
Sbjct: 158 PDTFTYNPLIRALCVRGCVLDALAVFDDM-LHRGCSPSVVTYSILLDATCKESGYKQAVV 216
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G +PD YN ++
Sbjct: 217 LLDEMRSKGCEPDIVTYNVLI 237
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK---PNLVTYTILIDNVCNTKNLRE 64
PDI TY+ ++ LCK R + + ++ A + K P+ VT+ +I ++C
Sbjct: 333 PDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDR 392
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+++V +S+ G PD YN I+ G+
Sbjct: 393 AIKVVDEMSEHGCIPDITTYNCIVDGF 419
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN L+ +C + ++ + S G KP+ VTYT ++ ++C+++
Sbjct: 224 KGCEPDIVTYNVLINAMCSQGDVGEALKVLNSL-PSYGCKPDAVTYTPVLKSLCSSERWE 282
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA +L++ + + PD +N ++
Sbjct: 283 EADKLLTKMFSNDCAPDEVTFNAVI 307
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN-VCNT 59
++ K PD T+N ++ LC+ VD+M + G P++ TY ++D +C +
Sbjct: 365 MVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEM-SEHGCIPDITTYNCIVDGFLCKS 423
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L++ + +G PD Y ++ G
Sbjct: 424 CKTEEALDLLNLMVSNGLCPDTTTYKSLAFG 454
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+K LC + V+ +LG ++TY +++ C N+ A R
Sbjct: 94 PAVIPCNILIKKLCADGRVADAERVVE----ALGPSATIITYNTMVNGYCRAGNIDAARR 149
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ F PD F YN +++
Sbjct: 150 MIDSVP---FAPDTFTYNPLIRA 169
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKC-LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI TYN +V LCK + ++ M S G+ P+ TY L + + A+
Sbjct: 407 PDITTYNCIVDGFLCKSCKTEEALDLLNLM-VSNGLCPDTTTYKSLAFGLSREDEMERAI 465
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + G PD +YN I+ G
Sbjct: 466 GMFRRVQAMGLSPDKMLYNAILLG 489
>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I TY+ L+ LCK ++ V++ +D+MR G +++TY+ LID +C +L
Sbjct: 368 KNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR-GQPADVITYSSLIDGLCKNGHLD 426
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + + D +P+ F + ++ G
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDG 453
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TY+ L+ LCK L ++M+ I+PN+ T+TIL+D +C L++A
Sbjct: 406 PADVITYSSLIDGLCKNGHLDRAIALFNKMKDQ-EIRPNIFTFTILLDGLCKGGRLKDAQ 464
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ L G+ + + YN ++ G+
Sbjct: 465 EVFQDLLTKGYHLNVYTYNVMINGH 489
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TYN L+ C L +++M I PN+ TY IL+D +C ++
Sbjct: 228 KGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKT-INPNVYTYNILVDALCKEGKVK 286
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +++ + + KPD Y+T+M GY
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGY 314
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD T N L+K LC + +F D++ A G + N V+Y LI+ VC + R A+
Sbjct: 126 PPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ-GFQLNQVSYATLINGVCKIGDTRAAI 184
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+ + + KPD +YNTI+
Sbjct: 185 KFLRKIDGRLTKPDVVMYNTII 206
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+++TYN LV LCK + + + M + +KP+++TY+ L+D
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVITYSTLMDGYFLVY 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A + +A+S G PD Y ++ G+
Sbjct: 319 EVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+IFT+ L+ LCK L V Q + G N+ TY ++I+ C L
Sbjct: 438 QEIRPNIFTFTILLDGLCKGGRLKDAQE-VFQDLLTKGYHLNVYTYNVMINGHCKQGLLE 496
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ ++S + D+G P+ F + TI+
Sbjct: 497 EALTMLSKMEDNGCIPNAFTFETII 521
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ +CK F+ ++ L KP++V Y +ID +C + + EA L S
Sbjct: 166 SYATLINGVCKIGDTRAAIKFLRKIDGRL-TKPDVVMYNTIIDAMCKYQLVSEAYGLFSE 224
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
++ G D YNT++ G+
Sbjct: 225 MAVKGISADVVTYNTLIYGF 244
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + PP I +N ++ K + +T + ++ GI+P+L+T ILI+ C+
Sbjct: 51 LCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELK-GIQPDLITLNILINCFCHMG 108
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +++ + G+ PD NT++KG
Sbjct: 109 QITFGFSVLAKILKRGYPPDTVTLNTLIKG 138
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T N L+ C C +T ++ + ++ G P+ VT LI +C
Sbjct: 85 LELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKR-GYPPDTVTLNTLIKGLCLKG 143
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ L GF+ + Y T++ G
Sbjct: 144 QVKKALHFHDKLLAQGFQLNQVSYATLING 173
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TY LV L + ++ + ++ M+ S G PN+ YTI+I+ +C + EA
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLS-GCLPNVYPYTIIINGLCQFGRVEEA 635
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+SA+ DSG P+ Y ++KGY
Sbjct: 636 EKLLSAMQDSGVSPNHVTYTVMVKGY 661
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P TY L+K LC + +N D+M A G KPN+ TYT+LID +C +
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIAR-GCKPNVHTYTVLIDGLCRDGKIE 353
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + G P YN ++ GY
Sbjct: 354 EANGVCRKMVKDGIFPSVITYNALINGY 381
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++ Y ++ LC+ + + M+ S G+ PN VTYT+++ N L A+
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDS-GVSPNHVTYTVMVKGYVNNGKLDRALE 672
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V A+ + G++ + +Y+++++G+
Sbjct: 673 TVRAMVERGYELNDRIYSSLLRGF 696
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ LC+ + + +M + G+ P++V+Y +LID +C ++ A +
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN-GLSPDIVSYNVLIDGLCREGHMNVAYK 462
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+++++ +PDC + I+ +
Sbjct: 463 LLTSMNSFDLEPDCLTFTAIINAF 486
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y+ L+ LC+ L + DQM G +P+ TYT+LI +C+ + +A
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQM-GEKGCQPSTRTYTVLIKALCDRGLIDKAFN 322
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G KP+ Y ++ G
Sbjct: 323 LFDEMIARGCKPNVHTYTVLIDG 345
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ CK + + + M KPN+ T+ L++ +C +A+
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKR-ACKPNVRTFNELMEGLCRVGKPYKAVH 427
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D+G PD YN ++ G
Sbjct: 428 LLKRMLDNGLSPDIVSYNVLIDG 450
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LC+ + +M GI P+++TY LI+ C
Sbjct: 327 MIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD-GIFPSVITYNALINGYCKDG 385
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L++ + KP+ +N +M+G
Sbjct: 386 RVVPAFELLTVMEKRACKPNVRTFNELMEG 415
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI +YN L+ LC+ + Y + M S ++P+ +T+T +I+ C A
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNVAYKLLTSMN-SFDLEPDCLTFTAIINAFCKQGKADVA 495
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G D T++ G
Sbjct: 496 SAFLGLMLRKGISLDEVTGTTLIDG 520
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 21 CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80
C+ +L D M PN V+Y+ILI +C L EA L + + G +P
Sbjct: 241 CRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPS 300
Query: 81 CFVYNTIMKG 90
Y ++K
Sbjct: 301 TRTYTVLIKA 310
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LG+ P++VTYT L+D + + ++ + R++ + SG P+ + Y I+ G
Sbjct: 575 LGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIING 625
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD T+ ++ CK F+ M GI + VT T LID VCN R+A
Sbjct: 472 LEPDCLTFTAIINAFCKQGKADVASAFLGLMLRK-GISLDEVTGTTLIDGVCNVGKTRDA 530
Query: 66 MRLVSAL 72
+ ++ L
Sbjct: 531 LFILETL 537
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI Y+ L+ CK +L + +M+ L +KP+LV YTI+I+ +C ++ +++A
Sbjct: 246 LSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRL-VKPDLVVYTIIINGMCRSRKVKDA 304
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++S L G KPD Y ++ G
Sbjct: 305 KEVLSRLIVEGLKPDVHTYTALVDG 329
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+++Y+ + CK + D+M + G+ PN VTY LI +C
Sbjct: 171 MVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEM-SHRGVVPNAVTYNTLIKALCQAL 229
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
R+A L + G PD Y+T++ G+
Sbjct: 230 RPRDAQVLFRKMCACGLSPDILAYSTLLDGF 260
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ +C+ R + + ++ G+KP++ TYT L+D +C ++ EA+R
Sbjct: 283 PDLVVYTIIINGMCRSRKVKDAKEVLSRLIVE-GLKPDVHTYTALVDGLCREGSIIEALR 341
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G P YN +++G
Sbjct: 342 LFRKMEEDGCMPGSCSYNVLLQG 364
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T N L++ C + V M S G+KP++ +Y+I I+ C + + EAM
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLM-VSKGLKPDVYSYSIFINGYCKVEKIDEAME 201
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +S G P+ YNT++K
Sbjct: 202 LFDEMSHRGVVPNAVTYNTLIKA 224
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+K LC+ +M A G+ P+++ Y+ L+D C NL E +
Sbjct: 213 PNAVTYNTLIKALCQALRPRDAQVLFRKMCAC-GLSPDILAYSTLLDGFCKQGNLDEMLV 271
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + KPD VY I+ G
Sbjct: 272 LFQEMQRRLVKPDLVVYTIIING 294
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ + ++ T + L+ C C + ++ + G KP++V +T LID VC
Sbjct: 68 FRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKT-LKRGFKPDVVIFTTLIDGVCRIGKT 126
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + G PD N++M+GY
Sbjct: 127 ELAAGLLKEMGLVGCVPDVVTCNSLMRGY 155
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI + L PD+ TY LV LC+ S+ +M G P +Y +L+
Sbjct: 311 LIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEED-GCMPGSCSYNVLLQGCLQHN 369
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++L+ ++D GF D V T +K +
Sbjct: 370 DTSTVVQLIHEMADRGFYADA-VTRTFLKDF 399
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD+ + L+ +C+ + +M +G P++VT L+ C+ +
Sbjct: 104 RGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEM-GLVGCVPDVVTCNSLMRGYCSQGKID 162
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ + G KPD + Y+ + GY
Sbjct: 163 KVRKIFHLMVSKGLKPDVYSYSIFINGY 190
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +T+N L+K C L ++MR G+KP++VTY +I +C + +A
Sbjct: 403 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH-GVKPDVVTYRTVIAALCRIGKMDDA 461
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + D G PD + YN +++G+
Sbjct: 462 MEKFNQMIDQGVAPDKYAYNCLIQGF 487
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------RASLG- 41
++ + +PPD+ TYN +V LCK R++ F+ QM +S G
Sbjct: 258 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 317
Query: 42 ---------------IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
I P++VT ++L+ ++C ++EA + ++ G PD F YN
Sbjct: 318 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 377
Query: 87 IMKGY 91
++ GY
Sbjct: 378 MLNGY 382
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI ++ ++ LCK + N D + ++G+ P+ V Y++L+D C + +A+R+
Sbjct: 511 DIVFFSSIINNLCKLGRVMDAQNIFD-LTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRV 569
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
A+ +G +P+ VY T++ GY
Sbjct: 570 FDAMVSAGIEPNVVVYCTLVNGY 592
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y+ L+ C + D M S GI+PN+V Y L++ C + E
Sbjct: 543 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAM-VSAGIEPNVVVYCTLVNGYCKIGRIDEG 601
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KP +Y+ I+ G
Sbjct: 602 LSLFREMLQRGIKPSTILYSIIIDG 626
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K PD+F+YN ++ L + + D M GI P+ T+ +LI N
Sbjct: 363 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDFYTFNVLIKAYANCG 421
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +AM + + + D G KPD Y T++
Sbjct: 422 MLDKAMIIFNEMRDHGVKPDVVTYRTVI 449
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD + YN L++ C SL + ++ + G+ ++V ++ +I+N+C
Sbjct: 468 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLG 526
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + G PD VY+ +M GY
Sbjct: 527 RVMDAQNIFDLTVNVGLHPDAVVYSMLMDGY 557
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI-KPNLVTYTILIDNVCNTKNLREAM 66
PD+F+Y+ L+K LC + + M + PN+V Y +ID ++ +A
Sbjct: 193 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 252
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD YN+++
Sbjct: 253 DLFKEMVQRGIPPDLVTYNSVVHA 276
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TYN +++ L K R ++RA + +K N++T +ID + T+ + EA L
Sbjct: 651 DICTYNIVLRGLFKNRCFDEAIFLFKELRA-MNVKINIITLNTMIDGMFQTRRVEEAKDL 709
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+++S S P+ Y+ ++
Sbjct: 710 FASISRSRLVPNVVTYSIMI 729
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ T + L+ LCK + + D M A G P++ +Y I+++
Sbjct: 324 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMKGQNPDVFSYNIMLNGY 382
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + L + G PD + +N ++K Y
Sbjct: 383 ATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 417
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L +I N L++ C+ + + + LG P++ +Y+IL+ ++C+
Sbjct: 150 LLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 209
Query: 61 NLREAMRLVSALSDSGF--KPDCFVYNTIMKGY 91
+A L+ +++ G P+ YNT++ G+
Sbjct: 210 KSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGF 242
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ Y LV CK + + +M GIKP+ + Y+I+ID +
Sbjct: 573 MVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM-LQRGIKPSTILYSIIIDGLFQAG 631
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++SG D YN +++G
Sbjct: 632 RTVPAKMKFHEMTESGIAMDICTYNIVLRG 661
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ K + + +M GI P+LVTY ++ +C + + +A
Sbjct: 230 PNVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDLVTYNSVVHALCKARAMDKAEA 288
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + P+ + YN ++ GY
Sbjct: 289 FLRQMVNKRVLPNNWTYNNLIYGY 312
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 2 IFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK+L +I T N ++ + + R + + + S + PN+VTY+I+I N+
Sbjct: 674 LFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSR-LVPNVVTYSIMITNL 732
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EA + S++ ++G +P+ + N +++
Sbjct: 733 IKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVR 765
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TY L+ C + F Q+ + G++ N++ L++ C K EA
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRT-GLRVNIIIANHLLEGFCEAKRTDEA 178
Query: 66 MR-LVSALSDSGFKPDCFVYNTIMK 89
+ L+ + G PD F Y+ ++K
Sbjct: 179 LDILLHRTPELGCVPDVFSYSILLK 203
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TY+ ++ LCK +T + G N V Y LI+ +C +N+
Sbjct: 107 KGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIE 166
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +L+ ++ G+ PD YNTI+ G
Sbjct: 167 RAYKLLEEMASKGYVPDNITYNTILSG 193
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD YN L+ K + ++M S+G++P++ TY L++ C ++EA
Sbjct: 39 ISPDGIEYNILIDGYAKKGRVDEANRLYEEM-VSVGLEPSIYTYNSLLNAFCKETKMKEA 97
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M L +++ GF+PD Y+TI+ G
Sbjct: 98 MELFKTMAEKGFEPDVVTYSTIISG 122
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++L PD+ T+N L+ LCK L + +DQM S G P+ V Y L++ +
Sbjct: 385 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCS-GCAPDYVAYNTLMNGLRKQG 443
Query: 61 NLREAMRLVSALSDSGFKPDCF 82
+A RL A+ + GF DCF
Sbjct: 444 RHIQADRLTQAMKEKGFLSDCF 465
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +Y+ ++ LCK + D+M + P++VT+ IL+D +C L EA
Sbjct: 357 PDIVSYSVVLNGLCKTNKVHDARVLFDRM-IERKLVPDVVTFNILMDGLCKAGKLDEAKD 415
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ SG PD YNT+M G
Sbjct: 416 LLDQMTCSGCAPDYVAYNTLMNG 438
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ ++ C+ + + + +++M + +G P++VTY IL+D +C T + +A
Sbjct: 287 PNGATYSIVLSGHCRAKKVDDAHKVLEEM-SKIGAVPDVVTYNILLDGLCKTNLVDKAHE 345
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S + D+G PD Y+ ++ G
Sbjct: 346 LFSTMVDNGCAPDIVSYSVVLNG 368
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ LC+ ++ F D M S G P++V Y L+D + EAM+
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSM-PSRGYSPDVVAYNGLLDALYKEGKTDEAMK 240
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G+ PD YN+I+ G
Sbjct: 241 LFKDVIAKGYMPDTVTYNSILLG 263
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
++ P+ +T+ ++K CK L Y +QM + GI P+ + Y ILID +
Sbjct: 1 MRECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDN-GISPDGIEYNILIDGYAKKGRV 59
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL + G +P + YN+++ +
Sbjct: 60 DEANRLYEEMVSVGLEPSIYTYNSLLNAF 88
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + YN L+ LCK ++ Y +++M AS G P+ +TY ++ +C
Sbjct: 140 MIERGCSANTVAYNALINGLCKDENIERAYKLLEEM-ASKGYVPDNITYNTILSGLCRMG 198
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA + ++ G+ PD YN ++
Sbjct: 199 KVSEAKQFFDSMPSRGYSPDVVAYNGLL 226
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD TYN ++ L + ++ +M AS G PN TY+I++ C K
Sbjct: 245 VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVAS-GCAPNGATYSIVLSGHCRAK 303
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A +++ +S G PD YN ++ G
Sbjct: 304 KVDDAHKVLEEMSKIGAVPDVVTYNILLDG 333
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK + + M G P++V+Y+++++ +C T + +A
Sbjct: 322 PDVVTYNILLDGLCKTNLVDKAHELFSTM-VDNGCAPDIVSYSVVLNGLCKTNKVHDARV 380
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + PD +N +M G
Sbjct: 381 LFDRMIERKLVPDVVTFNILMDG 403
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P I+TYN L+ CK + M A G +P++VTY+ +I +C T + EA
Sbjct: 74 LEPSIYTYNSLLNAFCKETKMKEAMELFKTM-AEKGFEPDVVTYSTIISGLCKTGKVTEA 132
Query: 66 MRLV-SALSDSGFKPDCFVYNTIMKG 90
+ ++ + + G + YN ++ G
Sbjct: 133 LEMLFHKMIERGCSANTVAYNALING 158
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ TYN ++ LC + Y +D+M + + PNL+T I++D +C + L
Sbjct: 248 KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHA-SLFPNLLTVNIMVDRLCKARKLE 306
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + S G PDC Y +++ G
Sbjct: 307 EAYKIFESASQRGCNPDCVTYCSLIDG 333
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ +TY+ L+ LC+ + + F M+ G+ PN+VTYT +I + N+ +A
Sbjct: 601 PPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ-GLVPNVVTYTTMISGLAKVGNITDAY 659
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L +G PD +N +++G
Sbjct: 660 SLFERFKANGGIPDAASFNALIEG 683
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI YN + C K ++ F +++A G+KP+ V+YT +I +C L EA
Sbjct: 111 LEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEA 169
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + P + YNT++ GY
Sbjct: 170 EELFAQMEAERSVPCAYAYNTMIMGY 195
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T N +V LCK R L Y + + G P+ VTY LID + + EA
Sbjct: 285 LFPNLLTVNIMVDRLCKARKLEEAYKIFESA-SQRGCNPDCVTYCSLIDGLGKKGQVDEA 343
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL + D+G + VY ++++ +
Sbjct: 344 YRLFEKMLDAGHNANPVVYTSLIRNF 369
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI + PD+ N + C+ K + + +R S G P++ +Y+ILI +
Sbjct: 385 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIR-SYGFLPDVRSYSILIHGLTKAG 443
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
RE + A+ GF D YN ++ G+
Sbjct: 444 QARETSNIFHAMKQQGFALDARAYNAVVDGF 474
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + TY +V L K L Y ++ + S GI+ N+V Y+ LID +
Sbjct: 493 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK-SKGIELNVVLYSSLIDGFGKVGRID 551
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA ++ + G P+ + +N+++
Sbjct: 552 EAYLILEEMMKKGLTPNVYTWNSLL 576
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN +V CK + Y +++M+ ++P + TY ++D + L EA L
Sbjct: 463 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPTVATYGAIVDGLAKIDRLDEAYML 521
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
G + + +Y++++ G+
Sbjct: 522 FEEAKSKGIELNVVLYSSLIDGF 544
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY ++ L K ++T Y+ ++ +A+ GI P+ ++ LI+ + N EA
Sbjct: 635 LVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI-PDAASFNALIEGMSNANRAMEA 693
Query: 66 MR-LVSALSDS 75
+ V LS S
Sbjct: 694 YQTTVYQLSSS 704
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ TYN L++ LC R+ T +M+ G P+ TY +LID++C
Sbjct: 397 LTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTK-GCHPDEFTYNMLIDSLCFRG 455
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+EA+ L+ + SG + YNT++ G+
Sbjct: 456 KLQEALNLLKEMEVSGCARNVITYNTLIDGF 486
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+TYN L+ LCK + ++QM PN VTY +I +C + EA +
Sbjct: 334 PDIYTYNSLISGLCKLGEVDEAVKVLNQM-IERDCSPNTVTYNTIISTLCKENQVEEATK 392
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L+ G PD YN++++G
Sbjct: 393 LALVLTGKGILPDVCTYNSLIQG 415
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ CK + + DQM G+ N VTY LID +C ++ + EA +L
Sbjct: 475 NVITYNTLIDGFCKNKRIAEAEEIFDQMELQ-GVSRNSVTYNTLIDGLCKSERVEEASQL 533
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G +PD F YN+++
Sbjct: 534 MDQMIMEGLRPDKFTYNSLL 553
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ LC L N + +M S G N++TY LID C K + EA
Sbjct: 439 PDEFTYNMLIDSLCFRGKLQEALNLLKEMEVS-GCARNVITYNTLIDGFCKNKRIAEAEE 497
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + YNT++ G
Sbjct: 498 IFDQMELQGVSRNSVTYNTLIDG 520
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LCK + +DQM G++P+ TY L+ C ++++A +V
Sbjct: 513 TYNTLIDGLCKSERVEEASQLMDQMIME-GLRPDKFTYNSLLTYFCKAGDIKKAADIVQT 571
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ G +PD Y T++ G
Sbjct: 572 MASDGCEPDIVTYGTLIAG 590
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD FTYN L+ CK + + V M AS G +P++VTY LI +C
Sbjct: 537 MIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTM-ASDGCEPDIVTYGTLIAGLCKAG 595
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +L+ + G YN +++
Sbjct: 596 RVEAATKLLRTIQMKGINLTPHAYNPVIQA 625
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YNFL+ L L V S GI+P++ T+ ILI +C +R A+ L+ +
Sbjct: 163 YNFLLNVLVDGNKLKLV-EIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEM 221
Query: 73 SDSGFKPDCFVYNTIMKGY 91
D G PD + TIM+G+
Sbjct: 222 EDFGLLPDEKTFTTIMQGF 240
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ TYN ++ LCK + + GI P++ TY LI +C ++
Sbjct: 362 MIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGK-GILPDVCTYNSLIQGLCLSR 420
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N AM L + G PD F YN ++
Sbjct: 421 NHTVAMELYKEMKTKGCHPDEFTYNMLI 448
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+N LV L K + +D M G P++ TY LI +C + EA++
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLRE-GFDPDIYTYNSLISGLCKLGEVDEAVK 357
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + + P+ YNTI+
Sbjct: 358 VLNQMIERDCSPNTVTYNTII 378
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 38/71 (53%)
Query: 20 LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKP 79
CK + F+++M G P+ T+ +L++ + T +++ A+ ++ + GF P
Sbjct: 275 FCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDP 334
Query: 80 DCFVYNTIMKG 90
D + YN+++ G
Sbjct: 335 DIYTYNSLISG 345
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ T+N L+K LC+ + +++M G+ P+ T+T ++
Sbjct: 186 MVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEME-DFGLLPDEKTFTTIMQGFIEEG 244
Query: 61 NLREAMRLVSALSDSG 76
NL AMR+ + ++G
Sbjct: 245 NLDGAMRVKEQMVEAG 260
>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
Length = 618
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L PD FT + +V+ LC + F++ M+ S GI N Y +LID C +
Sbjct: 339 IIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQS-GIALNAAAYNVLIDEYCKSG 397
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL EA+ + +S+ G +P+ Y++++ G+
Sbjct: 398 NLDEALVTCTRMSEVGVEPNVVTYSSLIDGH 428
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TYN L+ + + DQM A I PN+VTYT +I +C
Sbjct: 164 MLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARR-IDPNVVTYTTMIYALCEED 222
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L + ++G +P+ + YN +M +
Sbjct: 223 CIGDAEGLFLEMKEAGMRPNLYTYNALMSSH 253
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TY ++ LC+ + +M+ + G++PNL TY L+ +
Sbjct: 199 MVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEA-GMRPNLYTYNALMSSHFKRD 257
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++ A+ L G P+ ++ T++ G
Sbjct: 258 NIKHALVFYYDLLKCGLVPNDVIFTTLIDG 287
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN L+ K ++ F + G+ PN V +T LID +C + EA
Sbjct: 241 PNLYTYNALMSSHFKRDNIKHALVFYYDL-LKCGLVPNDVIFTTLIDGLCKANRITEAKN 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + P VYN+++ G
Sbjct: 300 IFLDMPRYEVAPTVPVYNSLIHG 322
>gi|413935328|gb|AFW69879.1| hypothetical protein ZEAMMB73_779488 [Zea mays]
Length = 327
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 2 IFKQLP------PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-----SLGIKPNLVTYT 50
+F+ LP PD TYN ++ LC+ L T D MRA G PN+V YT
Sbjct: 82 LFRFLPEAYAFAPDAITYNSMLAALCRAGDLATARRLFDGMRAGEQGGEAGAFPNVVAYT 141
Query: 51 ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+I C ++ EA+ L + G +P+ YNT+++G+
Sbjct: 142 TMIRACCASRLADEALSLFKMMLADGVRPNRITYNTMVQGF 182
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y +++ C R + M A G++PN +TY ++ C + E ++
Sbjct: 135 PNVVAYTTMIRACCASRLADEALSLFKMMLAD-GVRPNRITYNTMVQGFCQAGRM-EPVK 192
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V + FK D +NT+M +
Sbjct: 193 EVFGMDS--FKRDTCTFNTLMAAH 214
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ L K LT + ++M + GI+PN +TY LI +CN K
Sbjct: 326 MITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEM-ITRGIEPNTITYNSLIYGLCNDK 384
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA +++ + G PD + YN ++ G+
Sbjct: 385 RLDEANQMMDLMVSKGCDPDIWTYNILINGF 415
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+ TYN L+ LC + L +D M S G P++ TY ILI+ C K
Sbjct: 361 MITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLM-VSKGCDPDIWTYNILINGFCKAK 419
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + MRL +S G D Y+T+++G+
Sbjct: 420 QVDDGMRLFRKMSLRGMIADTVTYSTLIQGF 450
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY ++ +CK + + + + +M IKP++VTYTI+IDN+C L +A+
Sbjct: 228 PNQFTYGPILNRMCKSGNTASALDLLRKMEHR-KIKPHVVTYTIIIDNLCKDGRLDDALS 286
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
S + G K + F YN+++ +
Sbjct: 287 FFSEMETKGIKANVFTYNSLIGSF 310
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + D TY+ L++ C+ R L +M S G+ P ++TY IL+D +C+ L
Sbjct: 433 LRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEM-VSQGVHPGIMTYAILLDGLCDNGEL 491
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++ + + D +YN I+ G
Sbjct: 492 EEALGILDQMHKCKMELDIGIYNIIIHG 519
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + D++T N ++ C C+ R L ++ + ++ LG +PN VT+ L++ +C +
Sbjct: 118 LKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKI-FKLGYEPNTVTFNTLLNGLCLEGRV 176
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ LV + S PD NTI+ G
Sbjct: 177 FEAVELVDCMVLSQHVPDLITLNTIVNG 204
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI YN ++ +C + ++ + S G+K ++ +Y I++ +C +L E
Sbjct: 505 KMELDIGIYNIIIHGMCNANKVDDAWSLFCSL-PSKGVKRDIQSYNIMLSGLCKRSSLSE 563
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + + G++PD YNT+++ +
Sbjct: 564 ADALFRKMKEDGYEPDGCTYNTLIRAH 590
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 34/121 (28%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA------------------SLG---- 41
+++ P + TY ++ LCK L +F +M S G
Sbjct: 259 RKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDD 318
Query: 42 ------------IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
I PN+VT++ LID++ L EA L + + G +P+ YN+++
Sbjct: 319 GAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIY 378
Query: 90 G 90
G
Sbjct: 379 G 379
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 2 IFK-QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
IFK P+ T+N L+ LC + VD M S + P+L+T +++ +C
Sbjct: 151 IFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHV-PDLITLNTIVNGLCLKD 209
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+ L++ + +G +P+ F Y I+
Sbjct: 210 RVSEAVDLIARMMANGCQPNQFTYGPIL 237
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + DI +YN ++ LCK SL+ +M+ G +P+ TY LI ++
Sbjct: 539 KGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKED-GYEPDGCTYNTLIRAHLRGNDIT 597
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+++L+ + GF D +M
Sbjct: 598 TSVQLIEEMKRCGFSSDASTVKIVM 622
>gi|357140804|ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Brachypodium distachyon]
Length = 926
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PD+ YN ++ LC+ + + YN + M S G+ PN VTYTIL++N
Sbjct: 710 LVESGMMPDLHIYNGMLNGLCRAQKMDDAYNLLSLMEQS-GVLPNHVTYTILMNNDIRLG 768
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A++L ++L+ G D VYNT +KG
Sbjct: 769 DSNRAIQLFNSLNSDGHVFDDVVYNTFIKG 798
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++K LC+ + + ++ M+ S G++P++ T +I++ C ++ A+
Sbjct: 427 PSVLTYNIVIKYLCRQKRMDDARTLINLMQ-SRGVRPDMSTNSIMVTAYCKIGDIESALS 485
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ G +P VY++I+
Sbjct: 486 LFDEMAKDGLEPSIAVYDSII 506
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + +V CK + + + D+M A G++P++ Y +I +C + +EA
Sbjct: 462 PDMSTNSIMVTAYCKIGDIESALSLFDEM-AKDGLEPSIAVYDSIIACLCRLGHFKEAEF 520
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + ++G PD +Y T++ GY
Sbjct: 521 TLRQMIEAGLVPDEVIYTTLLNGY 544
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LP D N ++ +C L Y +D++ A G +P+++TY I+I +C K + +A
Sbjct: 391 LPIDAI-LNMMIIAMCSEGRLDVSYYLLDKLVA-YGYEPSVLTYNIVIKYLCRQKRMDDA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L++ + G +PD N+IM
Sbjct: 449 RTLINLMQSRGVRPD-MSTNSIM 470
Score = 41.2 bits (95), Expect = 0.069, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P I Y+ ++ CLC+ + QM + G+ P+ V YT L++ ++ + A
Sbjct: 495 LEPSIAVYDSIIACLCRLGHFKEAEFTLRQMIEA-GLVPDEVIYTTLLNGYSTMRHTKAA 553
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R+ + + G +P Y ++ G
Sbjct: 554 CRVFDEMLERGLQPGSHAYGALING 578
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P TYN ++ CK + + + M G+ P+L YT+L+ ++C L
Sbjct: 248 RGMEPTPVTYNVMMWWYCKNKWVGAAMELYNVMVRG-GVSPDLRCYTMLMTSLCKEGKLV 306
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA +L + + + G PD ++ +I +
Sbjct: 307 EAEQLFTKMLERGVFPDHVLFISIAR 332
>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
Length = 584
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ YN +V LC+ + F+D+ G P +VTYT LI C K ++
Sbjct: 196 RRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKMK 255
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R+ +A+ + +P Y+ I+ G
Sbjct: 256 LAVRIWNAMLERKIQPTIVSYSVIIDG 282
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ + L+ L K L ++ MR + GI P++VT+T++I C + + A
Sbjct: 92 PPNQHAFASLIDALSKSTRLADAARALELMRDA-GIHPDVVTFTVMIRGFCKNRMMERAW 150
Query: 67 RLVSALSDSG-FKPDCFVYNTIMKGY 91
+ + S +PDCF+Y ++ GY
Sbjct: 151 EIFQEMIKSNRCQPDCFLYGVLIDGY 176
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ +++ CK R + + +M S +P+ Y +LID C + A+
Sbjct: 128 PDVVTFTVMIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALE 187
Query: 68 LVSALS-DSGFKPDCFVYNTIMKG 90
L+ + + +PD +YN+I+ G
Sbjct: 188 LLREMRVERRIQPDVVIYNSIVDG 211
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P I +Y+ ++ L K + Y V +M +LG + N+V YT LID +C +
Sbjct: 264 MLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREME-TLGCELNVVIYTTLIDGLCKSG 322
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L +A L + SG P+ Y T++ +
Sbjct: 323 FLDDAYALYRIMKRSGAFPNQRTYATLIDTF 353
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F Y L+ CK + + +MR I+P++V Y ++D +C + EA +
Sbjct: 164 PDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWK 223
Query: 68 LV-SALSDSGFKPDCFVYNTIMKG 90
+ + G P Y ++++G
Sbjct: 224 FLDETMVLQGCSPTVVTYTSLIRG 247
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + TY L++ CK + + + M I+P +V+Y+++ID +
Sbjct: 229 MVLQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAM-LERKIQPTIVSYSVIIDGLSKAG 287
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A R+V + G + + +Y T++ G
Sbjct: 288 RVYDAYRVVREMETLGCELNVVIYTTLIDG 317
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ C+ T D +R + ++ YT ++ +C + L +A
Sbjct: 341 PNQRTYATLIDTFCRNDRTETALGLFDHIRDYCPL--DVAMYTAVVSGLCRERRLDDARA 398
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +G D YN ++ G
Sbjct: 399 LFREMRLAGVSADTHAYNVLLHG 421
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ Y L+ LCK L Y M+ S G PN TY LID C A+ L
Sbjct: 307 NVVIYTTLIDGLCKSGFLDDAYALYRIMKRS-GAFPNQRTYATLIDTFCRNDRTETALGL 365
Query: 69 VSALSDSGFKP-DCFVYNTIMKG 90
+ D + P D +Y ++ G
Sbjct: 366 FDHIRD--YCPLDVAMYTAVVSG 386
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD+ Y LV+ C+ +++ +M+ + GIKPN+ TY+I+ID++C +
Sbjct: 193 KFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVA-GIKPNVYTYSIVIDSLCRCGQITR 251
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A + + + D+G +P+ YN++M+
Sbjct: 252 AHDIFAEMLDAGCQPNSITYNSLMR 276
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L++ K V +QM+ LG +P+ VTY LI+ C +NL +A++
Sbjct: 266 PNSITYNSLMRIHVKAGRTEKVLQVYNQMK-RLGCEPDTVTYNFLIETHCKDENLEDAIK 324
Query: 68 LVSALSDSGFKPDCFVYNTI 87
++ ++ G P+ +NT+
Sbjct: 325 VIGLMAKKGCAPNASTFNTL 344
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++ L+ LC+ R + F D ++ +P+++ YT L+ C N+ EA R
Sbjct: 162 PDKIAFSILISILCRERRASQAQEFFDSLKDKF--EPDVIVYTNLVRGWCRAGNISEAER 219
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +G KP+ + Y+ ++
Sbjct: 220 VFGEMKVAGIKPNVYTYSIVI 240
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYNFL++ CK +L + M A G PN T+ L + ++ A R
Sbjct: 301 PDTVTYNFLIETHCKDENLEDAIKVIGLM-AKKGCAPNASTFNTLFGCIAKLGDVNAAHR 359
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + + + + YNT+MK
Sbjct: 360 MYKKMKELNCEANTVTYNTLMK 381
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KP+ + ++ILI +C + +A +L D F+PD VY +++G+
Sbjct: 161 KPDKIAFSILISILCRERRASQAQEFFDSLKDK-FEPDVIVYTNLVRGW 208
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 33/73 (45%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P++ TY L+ C Y F +M ++P+L Y +++ + L++
Sbjct: 403 KIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKK 462
Query: 65 AMRLVSALSDSGF 77
LV + D GF
Sbjct: 463 HEELVEKMVDRGF 475
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN +V LC+ R L + V +MR S G++P+ VTYT LID C + L AM
Sbjct: 254 PDAVTYNAIVNGLCRARDLKSASGIVVEMR-SAGLRPDTVTYTTLIDGYCKEEELDMAME 312
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G D Y ++ G
Sbjct: 313 IKQNMVAEGVGLDEVTYTALISG 335
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY L++ LC+ + ++M G+KPN V +TILID C + +
Sbjct: 184 PDVYTYGALIQGLCRVGRIEDARGVFEKM-CGRGMKPNAVVFTILIDAHCKKGDAETMLE 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G +PD YN I+ G
Sbjct: 243 LHREMRERGVRPDAVTYNAIVNG 265
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ + L+ CK T+ +MR G++P+ VTY +++ +C ++L+
Sbjct: 215 RGMKPNAVVFTILIDAHCKKGDAETMLELHREMRER-GVRPDAVTYNAIVNGLCRARDLK 273
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +V + +G +PD Y T++ GY
Sbjct: 274 SASGIVVEMRSAGLRPDTVTYTTLIDGY 301
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ C+ + T + +M+ G KP +VTY ++++ C ++ A
Sbjct: 357 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNK-GRKPGVVTYNVIMNGFCKLGQMKNA 415
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A+ + G PD YN ++ G+
Sbjct: 416 DMLLNAMINIGVSPDDITYNILLDGH 441
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPP+ +N L++ L + L + N D+M+ S G++ +V++ +I +C +L A
Sbjct: 112 LPPEAKLFNVLMRDLVRLGELASAQNVFDEMQ-SRGVRRTVVSFNTMISGMCRAGDLDGA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +S++G PD + Y +++G
Sbjct: 171 ETLHRRMSEAGVTPDVYTYGALIQG 195
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ L K + +M + G++P+ TYT++ID C +++ +RL
Sbjct: 325 DEVTYTALISGLSKAGRSADAERVLGEMMEA-GLEPDNTTYTMVIDAFCRKGDVKTGLRL 383
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + + G KP YN IM G+
Sbjct: 384 LKEMQNKGRKPGVVTYNVIMNGF 406
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ CK + ++ M ++G+ P+ +TY IL+D C + +
Sbjct: 394 PGVVTYNVIMNGFCKLGQMKNADMLLNAM-INIGVSPDDITYNILLDGHCKHGKVTDIEE 452
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L SA G PD VY +I+
Sbjct: 453 LKSA---KGTVPDLGVYTSIV 470
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ ++N ++ +C+ L +M + G+ P++ TY LI +C + +A +
Sbjct: 151 VVSFNTMISGMCRAGDLDGAETLHRRM-SEAGVTPDVYTYGALIQGLCRVGRIEDARGVF 209
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G KP+ V+ ++ +
Sbjct: 210 EKMCGRGMKPNAVVFTILIDAH 231
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN +V LC+ R L + V +MR S G++P+ VTYT LID C + L AM
Sbjct: 378 PDAVTYNAIVNGLCRARDLKSASGIVVEMR-SAGLRPDTVTYTTLIDGYCKEEELDMAME 436
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G D Y ++ G
Sbjct: 437 IKQNMVAEGVGLDEVTYTALISG 459
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY L++ LC+ + ++M G+KPN V +TILID C + +
Sbjct: 308 PDVYTYGALIQGLCRVGRIEDARGVFEKM-CGRGMKPNAVVFTILIDAHCKKGDAETMLE 366
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G +PD YN I+ G
Sbjct: 367 LHREMRERGVRPDAVTYNAIVNG 389
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ + L+ CK T+ +MR G++P+ VTY +++ +C ++L+
Sbjct: 339 RGMKPNAVVFTILIDAHCKKGDAETMLELHREMRER-GVRPDAVTYNAIVNGLCRARDLK 397
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +V + +G +PD Y T++ GY
Sbjct: 398 SASGIVVEMRSAGLRPDTVTYTTLIDGY 425
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ C+ + T + +M+ G KP +VTY ++++ C ++ A
Sbjct: 481 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNK-GRKPGVVTYNVIMNGFCKLGQMKNA 539
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A+ + G PD YN ++ G+
Sbjct: 540 DMLLNAMINIGVSPDDITYNILLDGH 565
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPP+ +N L++ L + L + N D+M+ S G++ +V++ +I +C +L A
Sbjct: 236 LPPEAKLFNVLMRDLVRLGELASAQNVFDEMQ-SRGVRRTVVSFNTMISGMCRAGDLDGA 294
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +S++G PD + Y +++G
Sbjct: 295 ETLHRRMSEAGVTPDVYTYGALIQG 319
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ L K + +M + G++P+ TYT++ID C +++ +RL
Sbjct: 449 DEVTYTALISGLSKAGRSADAERVLGEMMEA-GLEPDNTTYTMVIDAFCRKGDVKTGLRL 507
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + + G KP YN IM G+
Sbjct: 508 LKEMQNKGRKPGVVTYNVIMNGF 530
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ CK + ++ M ++G+ P+ +TY IL+D C + +
Sbjct: 518 PGVVTYNVIMNGFCKLGQMKNADMLLNAM-INIGVSPDDITYNILLDGHCKHGKVTDIEE 576
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L SA G PD VY +I+
Sbjct: 577 LKSA---KGTVPDLGVYTSIV 594
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ ++N ++ +C+ L +M + G+ P++ TY LI +C + +A +
Sbjct: 275 VVSFNTMISGMCRAGDLDGAETLHRRM-SEAGVTPDVYTYGALIQGLCRVGRIEDARGVF 333
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G KP+ V+ ++ +
Sbjct: 334 EKMCGRGMKPNAVVFTILIDAH 355
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ P +++Y ++ LCK R + Y ++M+ + G KP+ VTY LI +C + L
Sbjct: 165 RKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLA-GCKPDRVTYNTLIHGLCVKQRLH 223
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L++ + ++GF+PD + +++G
Sbjct: 224 EAKDLLTVMVENGFQPDKITFTALIEG 250
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PD+FTYN ++ LCK R ++ F + M +P++VTY L+ +C +
Sbjct: 64 EKLVPDVFTYNVVIDTLCKARRISRAIEFFETM-----PEPDVVTYNTLLGGLCKNGRVA 118
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L ++ +G P Y T++
Sbjct: 119 QACSLFGSMEGAGITPSDVTYTTLI 143
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP++ TY K L + Y +M GI+P++V Y +L+D C L
Sbjct: 338 RGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQ-GIEPDMVAYNVLVDGFCKADRLD 396
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++V + SG P+ YNT++ +
Sbjct: 397 MAEKMVRYMDQSGLPPNIVTYNTLVGHH 424
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ YN LV CK L V M S G+ PN+VTY L+ + C
Sbjct: 370 MLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQS-GLPPNIVTYNTLVGHHCRKG 428
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + G +PD ++T++ G
Sbjct: 429 KVEAIGELLHTMVSRGRQPDVATWSTLVAG 458
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC + L + + M + G +P+ +T+T LI+ +C T ++EA
Sbjct: 204 PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVEN-GFQPDKITFTALIEGLCTTDRIKEAFV 262
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ G PD + ++
Sbjct: 263 LFQGMAKQGCAPDLVTHTVLV 283
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TY L+ CK T Y + Q+ AS P + +Y +I+ +C + + +A
Sbjct: 132 ITPSDVTYTTLIDVFCKMCQFETAYGLL-QLMASRKCSPTVYSYCSIINGLCKNRKVDQA 190
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + +G KPD YNT++ G
Sbjct: 191 YQLFEEMKLAGCKPDRVTYNTLIHG 215
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 3 FKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
F+ +P PD+ TYN L+ LCK + + M + GI P+ VTYT LID C
Sbjct: 93 FETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGA-GITPSDVTYTTLIDVFCKMCQ 151
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ ++ P + Y +I+ G
Sbjct: 152 FETAYGLLQLMASRKCSPTVYSYCSIING 180
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 2 IFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
IF Q P+ +Y +LVK LC+ + + + +M A + P++ TY ++ID +C +
Sbjct: 26 IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEM-AREKLVPDVFTYNVVIDTLCKAR 84
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ + + PD YNT++ G
Sbjct: 85 RISRAIEFFETMPE----PDVVTYNTLLGG 110
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + Y + + L + R + +M A G+ PN+VTYT + + K A
Sbjct: 306 PEAVILYTPIFRELGRRRGFDRAARLLQKM-ARRGVPPNVVTYTAFFKGLGDWKEGMRAY 364
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R + + G +PD YN ++ G+
Sbjct: 365 REFRRMLEQGIEPDMVAYNVLVDGF 389
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ LC + + M A G P+LVT+T+L+ +C + LR A+
Sbjct: 239 PDKITFTALIEGLCTTDRIKEAFVLFQGM-AKQGCAPDLVTHTVLVSKLCILRKLRPALS 297
Query: 68 LV 69
+V
Sbjct: 298 VV 299
>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
Length = 462
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI+T+N L+K C L ++MR G+KP++VTY +I +C + +A
Sbjct: 60 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH-GVKPHVVTYMTVIAALCRIGKMDDA 118
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + D G PD + Y+ +++G+
Sbjct: 119 MEKFNQMIDQGVVPDKYAYHCLIQGF 144
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD + Y+ L++ C SL + ++ + G++ ++V + +I+N+C
Sbjct: 125 MIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN-GMRLDIVFFGSIINNLCKLG 183
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + G PD VYN +M GY
Sbjct: 184 RVMDAQNIFDLTVNVGLHPDAVVYNMLMDGY 214
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K PD+F+Y ++ L + + D M GI P++ T+ +LI N
Sbjct: 20 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDIYTFNVLIKAYANCG 78
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +AM + + + D G KP Y T++
Sbjct: 79 MLDKAMIIFNEMRDHGVKPHVVTYMTVI 106
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI + ++ LCK + N D + ++G+ P+ V Y +L+D C + +A+R+
Sbjct: 168 DIVFFGSIINNLCKLGRVMDAQNIFD-LTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 226
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
A+ +G +P+ V + KG
Sbjct: 227 FDAMVSAGIEPNV-VGEMLQKG 247
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 IFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK+L DI T N ++ + + R + + + S G+ P VTY+I+I N+
Sbjct: 309 LFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRS-GLVPCAVTYSIMITNL 367
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EA + S++ ++G +PD + N +++
Sbjct: 368 IKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVR 400
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TYN ++ LCK L Y F ++M + P+L+TY++ I+ + + + EA
Sbjct: 287 VAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKE-KVSPSLITYSVFINGLIKLEKIDEA 345
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +S+ GF P+ VYNT++ GY
Sbjct: 346 NCVLKEMSELGFVPNEVVYNTLIDGY 371
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ Y ++ K + V N V Q +S I PN TYTI+ID C +
Sbjct: 705 EGLLPNVVCYTTIIGGYSKLGQMNKV-NIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTK 763
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +L++ +++ G PD YN G
Sbjct: 764 EAAKLLNEMTEKGILPDAVTYNAFTNG 790
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PDI+T+N L+ LC + + + + G PN+ TY ++ID C
Sbjct: 562 MVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKN-GYVPNVYTYGVMIDGYCKAN 620
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E L++ L + + VYN++++ Y
Sbjct: 621 KVEEGENLLNELVSKKLELNSVVYNSLIRAY 651
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+ CK + + ++M GI+P++ T+ +L+ +CN + EA RL
Sbjct: 535 DRITYNTLISGCCKEGKVKEGFELKEEM-VKKGIQPDIYTFNLLLHGLCNADKIDEASRL 593
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+G+ P+ + Y ++ GY
Sbjct: 594 WHECKKNGYVPNVYTYGVMIDGY 616
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P + TY+ + L K + + +M + LG PN V Y LID C
Sbjct: 317 MVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEM-SELGFVPNEVVYNTLIDGYCKMG 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ EA+++ + G P+ N++++G+
Sbjct: 376 NISEALKIRDDMLSKGISPNSVTLNSLIQGF 406
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K P+I T N L+ LCK ++ + M G+ + +TY LI C
Sbjct: 492 LLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLER-GLVFDRITYNTLISGCCKEG 550
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++E L + G +PD + +N ++ G
Sbjct: 551 KVKEGFELKEEMVKKGIQPDIYTFNLLLHG 580
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K+L + YN L++ C ++ + D M+ S G+ + TY+ L+ +CN
Sbjct: 632 LVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMK-SRGVLLSCATYSSLMHGLCNIG 690
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L+ + G P+ Y TI+ GY
Sbjct: 691 LVDDAKHLLDEMRKEGLLPNVVCYTTIIGGY 721
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ ++ ++ CK +M LG+ PN+VTY +I +C + L EA R
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKME-KLGVAPNVVTYNNIIHGLCKSGRLDEAYR 312
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ P Y+ + G
Sbjct: 313 FKEKMVKEKVSPSLITYSVFING 335
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ FTY ++ CK +++M GI P+ VTY + +C + EA
Sbjct: 742 IHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEK-GILPDAVTYNAFTNGLCKEGKVEEA 800
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ +S D Y T++ G
Sbjct: 801 FKVCDEMSSGAVCLDEITYTTLIDG 825
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ LV LCK ++ G PN+VT LI +C
Sbjct: 457 MLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK-GFVPNIVTSNALIHGLCKAG 515
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++E ++L+ + + G D YNT++ G
Sbjct: 516 NMQETLKLLRDMLERGLVFDRITYNTLISG 545
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ TYN ++ LC + Y +D+M + + PNL+T I++D +C + L
Sbjct: 116 KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHA-SLFPNLLTVNIMVDRLCKARKLE 174
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + S G PDC Y +++ G
Sbjct: 175 EAYKIFESASQRGCNPDCVTYCSLIDG 201
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ +TY+ L+ LC+ + + F M+ G+ PN+VTYT +I + N+ +A
Sbjct: 469 PPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ-GLVPNVVTYTTMISGLAKVGNITDAY 527
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L +G PD +N +++G
Sbjct: 528 SLFERFKANGGIPDAASFNALIEG 551
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T N +V LCK R L Y + + G P+ VTY LID + + EA
Sbjct: 153 LFPNLLTVNIMVDRLCKARKLEEAYKIFESA-SQRGCNPDCVTYCSLIDGLGKKGQVDEA 211
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL + D+G + VY ++++ +
Sbjct: 212 YRLFEKMLDAGHNANPVVYTSLIRNF 237
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK+L PD+ N + C+ K + + +R S G P++ +Y+ILI +
Sbjct: 249 IFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIR-SYGFLPDVRSYSILIHGL 307
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
RE + A+ GF D YN ++ G+
Sbjct: 308 TKAGQARETSNIFHAMKQQGFALDARAYNAVVDGF 342
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + TY +V L K L Y ++ + S GI+ N+V Y+ LID +
Sbjct: 361 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK-SKGIELNVVLYSSLIDGFGKVGRID 419
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA ++ + G P+ + +N+++
Sbjct: 420 EAYLILEEMMKKGLTPNVYTWNSLL 444
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN +V CK + Y +++M+ ++P + TY ++D + L EA L
Sbjct: 331 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPTVATYGAIVDGLAKIDRLDEAYML 389
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
G + + +Y++++ G+
Sbjct: 390 FEEAKSKGIELNVVLYSSLIDGF 412
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY ++ L K ++T Y+ ++ +A+ GI P+ ++ LI+ + N EA
Sbjct: 503 LVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI-PDAASFNALIEGMSNANRAMEA 561
Query: 66 MRLVSALSDSGFKPDCFVYN 85
+ + D+ + DC +++
Sbjct: 562 YQ--AGWLDTTMRLDCLIFS 579
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 30 YNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ F +++A G+KP+ V+YT +I +C L EA L + + P + YNT++
Sbjct: 3 WKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61
Query: 90 GY 91
GY
Sbjct: 62 GY 63
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ CK + + D+M GI N+VTY LID +C + + EA +L
Sbjct: 490 NVVTYNTLIDGFCKNKRIEEAEEIFDEMELQ-GISRNVVTYNTLIDGLCKNRRVEEAAQL 548
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G KPD F YN+++
Sbjct: 549 MDQMLMEGLKPDKFTYNSLL 568
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN L+ LCK + ++QM PN VTY LI +C + EA
Sbjct: 349 PDIFTYNSLIFGLCKLGEVEEAVEILNQMILR-DFSPNTVTYNTLISTLCKENQVEEATE 407
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L+ G PD +N++++G
Sbjct: 408 LARVLTSKGILPDVCTFNSLIQG 430
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTYNFL+ L L V V+ S GIKP++ T+ ILI +C +R A+ +
Sbjct: 175 DAFTYNFLLNVLVDGNKLKLV-EIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILM 233
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD + T+M+G+
Sbjct: 234 MEEMGSYGLSPDEKTFTTLMQGF 256
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN L+ LC L + + +M +S G N+VTY LID C K + EA
Sbjct: 454 PDEFTYNMLIDSLCSRGRLEEALSLLKEMESS-GCSRNVVTYNTLIDGFCKNKRIEEAEE 512
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + YNT++ G
Sbjct: 513 IFDEMELQGISRNVVTYNTLIDG 535
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T+N L++ LC + ++M+ G P+ TY +LID++C+
Sbjct: 412 LTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTK-GCHPDEFTYNMLIDSLCSRG 470
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L+ + SG + YNT++ G+
Sbjct: 471 RLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P T N LV CK + V +F+D+M ++ G +P+ T+ L++ +C +++ A+
Sbjct: 278 PSSNVTVNVLVHGYCKEGRIEEVLSFIDEM-SNEGFRPDRFTFNSLVNGLCRIGHVKHAL 336
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
++ + GF PD F YN+++ G
Sbjct: 337 EILDVMLQEGFDPDIFTYNSLIFG 360
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ TYN L+ LCK + ++ S GI P++ T+ LI +C T
Sbjct: 377 MILRDFSPNTVTYNTLISTLCKENQVEEATELA-RVLTSKGILPDVCTFNSLIQGLCLTN 435
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N R AM L + G PD F YN ++
Sbjct: 436 NHRLAMELFEEMKTKGCHPDEFTYNMLI 463
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ LCK R + +DQM G+KP+ TY L+ C ++++A +
Sbjct: 525 NVVTYNTLIDGLCKNRRVEEAAQLMDQMLME-GLKPDKFTYNSLLTYFCRAGDIKKAADI 583
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V ++ +G +PD Y T++ G
Sbjct: 584 VQTMTSNGCEPDSVTYGTLILG 605
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+N LV LC+ + +D M G P++ TY LI +C + EA+
Sbjct: 314 PDRFTFNSLVNGLCRIGHVKHALEILDVMLQE-GFDPDIFTYNSLIFGLCKLGEVEEAVE 372
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + F P+ YNT++
Sbjct: 373 ILNQMILRDFSPNTVTYNTLI 393
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 36/125 (28%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT---------- 50
++ + + PD+ T+N L+K LC+ + +++M S G+ P+ T+T
Sbjct: 202 MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEM-GSYGLSPDEKTFTTLMQGFIEEG 260
Query: 51 -------------------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYN 85
+L+ C + E + + +S+ GF+PD F +N
Sbjct: 261 NMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFN 320
Query: 86 TIMKG 90
+++ G
Sbjct: 321 SLVNG 325
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD FTYN L+ C+ + + V M ++ G +P+ VTY LI +
Sbjct: 552 MLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSN-GCEPDSVTYGTLILGLSKAG 610
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A RL+ + G YN ++K
Sbjct: 611 RVELASRLLRTVQLKGMVLAPQTYNPVIKA 640
>gi|168038568|ref|XP_001771772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676903|gb|EDQ63380.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 614
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT-------- 59
P + TYN L+ C + + L Y +M AS G+KP++VTYT L+ V T
Sbjct: 217 PSVLTYNTLISCCQQAKRLEDAYRIKAEMEAS-GVKPDVVTYTALMALVVKTGPYRGRSS 275
Query: 60 --KNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ L +A++L + D +PD YNT+M
Sbjct: 276 PAQRLEKALQLYQEMQDRNIRPDSITYNTLM 306
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
G+ P+++TY LI K L +A R+ + + SG KPD Y +M
Sbjct: 214 GVIPSVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALM 261
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTI--LIDNVCNTKNLREA 65
P+ TYN L+ CK + M S G + + T T LI + T+ L A
Sbjct: 405 PNAQTYNHLITASCKGGDNARALKAYELMWNS-GYQRAVTTATFNKLIQSASQTEGLESA 463
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+++ + D+G+KPD Y+T++
Sbjct: 464 LKMYRKMLDAGYKPDAITYSTLV 486
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 18 KCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGF 77
+ + +C SL+ V++M+A+ N TY LI + A+ + A+ D+G
Sbjct: 156 RSISRCSSLSEALEVVNEMKAAGVNAANEGTYLALITVCRRQQEGDRALSIYEAMKDAGV 215
Query: 78 KPDCFVYNTIM 88
P YNT++
Sbjct: 216 IPSVLTYNTLI 226
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++ YN L+ C + + F ++M GI+ NLVTY LID + L
Sbjct: 896 RGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKK-GIELNLVTYNTLIDGLSMNGKLA 954
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ +S G KPD F YN+++ GY
Sbjct: 955 EAEDMLLEISRKGLKPDVFTYNSLISGY 982
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P +F YN L+ LCK R + D+M A + P+L+TY LID C N +
Sbjct: 582 RISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARR-LLPSLITYNTLIDGYCKDGNPEK 640
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ + +P +NT++KG
Sbjct: 641 SFKVRERMKADNIEPSLITFNTLLKG 666
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P + TYN L+ CK + + ++M+A I+P+L+T+ L+ +
Sbjct: 613 MLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKAD-NIEPSLITFNTLLKGLFKAG 671
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A +++ + D GF PD F ++ + GY
Sbjct: 672 MVEDAENVLTEMKDQGFVPDAFTFSILFDGY 702
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y L+ CLCK L V + G+ PN+ Y +LID C+ + +A R
Sbjct: 865 PNVVSYGTLINCLCKGSKLLEA-QIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFR 923
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G + + YNT++ G
Sbjct: 924 FSEEMFKKGIELNLVTYNTLIDG 946
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTYN L+ ++ ++M+ S GIKP L TY +LI ++C + +
Sbjct: 966 KGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTS-GIKPTLKTYHLLI-SLCTKEGIE 1023
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +S +PD VYN ++ Y
Sbjct: 1024 LTKKIFGEMS---LQPDLLVYNGVLHCY 1048
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P + TYN L+ + ++ + +M + G PN+V+Y LI+ +C L
Sbjct: 825 LKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDN-GTMPNVVSYGTLINCLCKGSKL 883
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + D G P+ +YN ++ G
Sbjct: 884 LEAQIVKRDMEDRGVSPNVRIYNMLIDG 911
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P F Y ++ K + ++M+ I P + Y +LID +C + +++A +
Sbjct: 550 PSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDR-ISPTVFIYNVLIDGLCKVRQMKDAEQ 608
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + P YNT++ GY
Sbjct: 609 LFDEMLARRLLPSLITYNTLIDGY 632
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L + +T + L+ LCK + + + A G+ PN V Y +ID +L A
Sbjct: 723 LKMNAYTCSILLNALCKEGQIEKAEEILGREMAK-GLVPNEVLYNTMIDGYSRKGDLVGA 781
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ G KPD YN +++ +
Sbjct: 782 RMKIDAMEKQGMKPDHLAYNCLIRTF 807
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ YN ++ + L +D M G+KP+ + Y LI C ++
Sbjct: 756 KGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQ-GMKPDHLAYNCLIRTFCELGDME 814
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + V+ + G P YN ++ GY
Sbjct: 815 NAEQEVNKMKLKGVSPSVETYNILIGGY 842
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI---------KPNLVTYTILIDNVCN 58
PD FT++ L Y+ D+ A+LG+ K N T +IL++ +C
Sbjct: 690 PDAFTFSILFDG----------YSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCK 739
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A ++ G P+ +YNT++ GY
Sbjct: 740 EGQIEKAEEILGREMAKGLVPNEVLYNTMIDGY 772
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD+ YN ++ C + +N QM S+G+ + TY LI L E
Sbjct: 1034 LQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGL--DKTTYNSLILGQLKVGKLCE 1091
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +P+ Y+ I+KG+
Sbjct: 1092 VRSLIDEMKAREMEPEADTYDIIVKGH 1118
>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PP + TY +++ CK + VY +D M +S G PN++TYT+++ ++ EA
Sbjct: 251 FPPSVITYTTVLEAYCKQHNFRMVYEILDSM-SSEGCHPNVITYTMIMTSLAKCHMFEEA 309
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + + SG KPD YN+++
Sbjct: 310 LSVSHRMKSSGCKPDTLFYNSLI 332
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD +T+N V C R + +++M+A G P+++TYT +++ C N R
Sbjct: 215 HIQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQ-GFPPSVITYTTVLEAYCKQHNFRM 273
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++ ++S G P+ Y IM
Sbjct: 274 VYEILDSMSSEGCHPNVITYTMIM 297
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ LCK + + + S I+P+ T+ I + C+ + + EAM +
Sbjct: 188 TMNVLLDALCKEKKVEVARKVF--LVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEE 245
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF P Y T+++ Y
Sbjct: 246 MKAQGFPPSVITYTTVLEAY 265
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+I +N ++ LCK + VD + +G++P++++Y LID C + EA
Sbjct: 479 IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIEC-MGVRPDVISYNTLIDGHCLAGTIDEA 537
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+ + G KPD F YNT++ GY
Sbjct: 538 SKLLEGMVSVGLKPDSFSYNTLLHGY 563
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD F+YN L+ CK + + Y+ +M ++ GI P +VTY ++ + TK EA
Sbjct: 549 LKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSN-GITPGVVTYNTILHGLFQTKRFSEA 607
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + +SG K D + YN I+ G
Sbjct: 608 KELYLNMINSGTKWDIYTYNIILNG 632
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PPD+ TY ++ LCK + QM + G+KPN+ TY LI + +
Sbjct: 232 RGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDN-GVKPNIDTYNCLIHGYLSIGKWK 290
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E +R++ +S G KP+C Y +++
Sbjct: 291 EVVRMLEEMSAGGPKPNCCTYGSLL 315
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDI ++ LV LC V +M ++GI PN+V + ++ N+C
Sbjct: 439 MINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEM-LNVGIHPNIVFFNTILCNLCKEG 497
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E RLV ++ G +PD YNT++ G+
Sbjct: 498 RVMEGQRLVDSIECMGVRPDVISYNTLIDGH 528
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ +Y+ ++ + YN +M GI P++VTYT +ID +C + A
Sbjct: 200 PPNVVSYSTVINGFFTEGQVDKPYNLFLEM-MDRGIPPDVVTYTTVIDGLCKAQLFDRAE 258
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D+G KP+ YN ++ GY
Sbjct: 259 AVFQQMIDNGVKPNIDTYNCLIHGY 283
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F+Q+ P+I TYN L+ V +++M A G KPN TY L++ +
Sbjct: 260 VFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAG-GPKPNCCTYGSLLNYL 318
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C REA ++ G KP Y ++ GY
Sbjct: 319 CKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGY 353
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN L+ C ++ ++ M S+G+KP+ +Y L+ C + A
Sbjct: 516 PDVISYNTLIDGHCLAGTIDEASKLLEGM-VSVGLKPDSFSYNTLLHGYCKAGRIDSAYS 574
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +G P YNTI+ G
Sbjct: 575 HFRKMLSNGITPGVVTYNTILHG 597
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D N L+ LC + + + + Q LG P+ V+Y IL+ +CN K EA+ L
Sbjct: 128 DHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALEL 187
Query: 69 VSALSDSGF---KPDCFVYNTIMKGY 91
+ ++D P+ Y+T++ G+
Sbjct: 188 LHMMADDQVWSCPPNVVSYSTVINGF 213
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I+TYN ++ LCK + + Q S G++ N++T+ I+I + +AM L
Sbjct: 860 NIYTYNIILNGLCKSNCVDEAFKMF-QSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDL 918
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+A+ +G PD Y + +
Sbjct: 919 FAAIPANGLVPDVVTYRLVAE 939
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ +N KC + + ++MR G+ P+ V+Y LID +C
Sbjct: 369 MVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQ-GLSPDAVSYGALIDALCKLG 427
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A + + + G PD V+++++ G
Sbjct: 428 RVDDAEVKFNQMINEGVTPDIVVFSSLVYG 457
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ LCK F D M GIKP++ TY I++ L E
Sbjct: 306 PNCCTYGSLLNYLCKNGRCREARFFFDSMIGK-GIKPSVTTYGIMLHGYATKGALSEMHD 364
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + +G P+ ++N Y
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAY 388
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +I T+N ++ L K + + A+ G+ N+VTY ++++N+ +L
Sbjct: 652 KGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN-GLVQNVVTYRLVVENLIEEGSLE 710
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
E L SA+ +G P+ + N +++
Sbjct: 711 EFDSLFSAMEKNGTAPNSQMLNALVR 736
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN ++ LCK + + S G++ N++T+ I+I + +AM L
Sbjct: 622 DIYTYNIILNGLCKSNCVDEAIKMFQNL-CSKGLQLNIITFNIMIGALLKGGRKEDAMDL 680
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+A+ +G + Y +++
Sbjct: 681 FAAIPANGLVQNVVTYRLVVE 701
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ TY+ L+ C C+ L + + + G + + + L++ +C+ K + E
Sbjct: 89 KVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKT-GWRMDHIVINQLLNGLCDGKRVGE 147
Query: 65 AMR-LVSALSDSGFKPDCFVYNTIMKG 90
AM L+ + + G PD YN ++KG
Sbjct: 148 AMDVLLQRMPELGCMPDTVSYNILLKG 174
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ TYN ++ L + + M S + N+ TY I+++ +C +
Sbjct: 817 MLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSR-TQMNIYTYNIILNGLCKSN 875
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA ++ +L G + + +N ++
Sbjct: 876 CVDEAFKMFQSLCSKGLQLNIITFNIMI 903
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I YN L+ LCK ++ N + + A G+ PN VTYT LID C ++
Sbjct: 693 KGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGDIS 751
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + +G PD FVY+ + G
Sbjct: 752 NAFYLYNEMLATGITPDAFVYSVLTTG 778
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L++ CK R T + +MR G N VTY +LI +C + + EA
Sbjct: 240 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRER-GCGLNTVTYNVLIAGLCRSGAVEEA 298
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ D G PD F Y ++ G
Sbjct: 299 FGFKKDMEDYGLVPDGFTYGALING 323
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L+ KQ+ PD TYN +++ + S + + +M + GI PN+ TY+I+I
Sbjct: 405 LLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA-GISPNVYTYSIMIHG 463
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C + +A L+ ++ G KP+ FVY ++ GY
Sbjct: 464 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 499
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ L+ LCK + +D+M + G+ PN+V Y LID +C + ++ A
Sbjct: 662 PDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVDPNIVCYNALIDGLCKSGDISYARN 720
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +++ G P+C Y +++ G
Sbjct: 721 VFNSILAKGLVPNCVTYTSLIDG 743
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ LCK R +D+M + +KPN+V Y LID N EA
Sbjct: 310 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCA-ELKPNVVVYANLIDGFMREGNADEA 368
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + +G +P+ Y+ +++G
Sbjct: 369 FKMIKEMVAAGVQPNKITYDNLVRG 393
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LC+ ++ + F M G+ P+ TY LI+ +C ++ EA L+
Sbjct: 281 TYNVLIAGLCRSGAVEEAFGFKKDME-DYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 339
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+S + KP+ VY ++ G+
Sbjct: 340 MSCAELKPNVVVYANLIDGF 359
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+++TY+ ++ LC+ + +++M + G+KPN Y LI C N+ A
Sbjct: 450 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEM-TTKGLKPNAFVYAPLISGYCREGNVSLA 508
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ PD + YN+++ G
Sbjct: 509 CEIFDKMTKVNVLPDLYCYNSLIFG 533
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++ YN L+ L K + + QM+ G+ PN TY+ LI +L A +
Sbjct: 522 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQER-GLLPNEFTYSGLIHGYLKNGDLESAEQ 580
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV + D+G KP+ +Y +++ Y
Sbjct: 581 LVQRMLDTGLKPNDVIYIDLLESY 604
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P++ Y L+ + + + + +M A+ G++PN +TY L+ +C +
Sbjct: 344 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA-GVQPNKITYDNLVRGLCKMGQMDR 402
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + +PD YN I++G+
Sbjct: 403 ASLLLKQMVRDSHRPDTITYNLIIEGH 429
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ F Y L+ C+ +++ D+M + + P+L Y LI + +
Sbjct: 483 KGLKPNAFVYAPLISGYCREGNVSLACEIFDKM-TKVNVLPDLYCYNSLIFGLSKVGRVE 541
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E+ + + + + G P+ F Y+ ++ GY
Sbjct: 542 ESTKYFAQMQERGLLPNEFTYSGLIHGY 569
Score = 37.7 bits (86), Expect = 0.88, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P I N L+K L + ++ ++ V + GI P++ TY+ LI+ C +
Sbjct: 203 RGMAPSIRCCNALLKDLLRADAMALLWK-VREFMVGAGISPDVYTYSTLIEAYCKVREFD 261
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++ + + G + YN ++ G
Sbjct: 262 TAKKVLVEMRERGCGLNTVTYNVLIAG 288
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ TY L+ CK ++ + ++M A+ GI P+ Y++L +
Sbjct: 725 ILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAG 783
Query: 61 NLREAMRLVSAL 72
+L +AM L+ +
Sbjct: 784 DLEQAMFLIEEM 795
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 36/122 (29%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYT------------- 50
+ L P+ FTY+ L+ K L + V +M + G+KPN V Y
Sbjct: 553 RGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDT-GLKPNDVIYIDLLESYFKSDDIE 611
Query: 51 ----------------------ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
ILI N+ ++ N+ A R++S + +G PD VY++++
Sbjct: 612 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI 671
Query: 89 KG 90
G
Sbjct: 672 SG 673
>gi|357499035|ref|XP_003619806.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355494821|gb|AES76024.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 302
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PDI Y+ L+ LCK ++ V++ +D M G + +++ YT L+D +
Sbjct: 21 LHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDR-GQQADIIIYTSLLDALFKNH 79
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L+ + D G +PD F Y ++ G
Sbjct: 80 QVDKAIALLKKIKDRGIEPDMFTYTMLVDG 109
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+FTY LV LCK L + G N + ++I+ +C
Sbjct: 94 RGIEPDMFTYTMLVDGLCKNGRLKDAQEVYRDLMVK-GYHFNACMHNVMINGLCKEGLFD 152
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++S + D+G PD Y T+++
Sbjct: 153 EALFVLSEMEDNGCTPDVVTYKTLIRA 179
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK L F +M+ + G+KPN+V+Y+ L+D C +++A++
Sbjct: 198 PDVITYNALINCFCKFGKLPIGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAIK 256
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ G P+ + Y +++
Sbjct: 257 FYVDMRRVGLVPNEYTYTSLI 277
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ +TY L+ CK +L+ + ++M +G++ N+VTYT LID +C+ + ++EA
Sbjct: 266 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEM-LQVGVEWNVVTYTALIDGLCDAERMKEA 324
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G P+ YN ++ G+
Sbjct: 325 EELFGKMDTAGVIPNLASYNALIHGF 350
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TY L+ LC + +M + G+ PNL +Y LI KN+ A+ L
Sbjct: 304 NVVTYTALIDGLCDAERMKEAEELFGKMDTA-GVIPNLASYNALIHGFVKAKNMDRALEL 362
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ L G KPD +Y T + G
Sbjct: 363 LNELKGRGIKPDLLLYGTFIWG 384
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ +Y+ LV CK + F MR +G+ PN TYT LID C NL +A
Sbjct: 231 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR-RVGLVPNEYTYTSLIDANCKIGNLSDA 289
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + G + + Y ++ G
Sbjct: 290 FRLGNEMLQVGVEWNVVTYTALIDG 314
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN L+ K +++ +++++ GIKP+L+ Y I +C+ + + A
Sbjct: 338 PNLASYNALIHGFVKAKNMDRALELLNELKGR-GIKPDLLLYGTFIWGLCSLEKIEAAKV 396
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + G K + +Y T+M Y
Sbjct: 397 VMNEMKECGIKANSLIYTTLMDAY 420
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ L PD TYN ++ K L F ++M+ + +P+++TY LI+ C L
Sbjct: 158 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK-DMCCEPDVITYNALINCFCKFGKL 216
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G KP+ Y+T++ +
Sbjct: 217 PIGLEFYREMKGNGLKPNVVSYSTLVDAF 245
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ T+ L+ LCK + ++ ++ +++ G++ N +T +ID +C + A L
Sbjct: 445 VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF 504
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G PD Y ++M G
Sbjct: 505 EQMVQKGLVPDRTAYTSLMDG 525
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+ K V F M + G +P + TY I+ID +C ++ A
Sbjct: 93 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGA-GARPTVFTYNIMIDCMCKEGDVEAARG 151
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YN+++ G+
Sbjct: 152 LFEEMKFRGLVPDTVTYNSMIDGF 175
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
IFT ++ LCK + +QM G+ P+ YT L+D N+ EA+ L
Sbjct: 483 IFTA--MIDGLCKDNQVEAATTLFEQM-VQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 539
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+++ G K D Y +++ G
Sbjct: 540 DKMAEIGMKLDLLAYTSLVWG 560
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++++Y LV CK + YN +++M A G+KPN V + LI C +
Sbjct: 412 KGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSAD-GLKPNTVGFNCLISAFCKEHRIP 470
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + + G KPD + +N+++ G
Sbjct: 471 EAVEIFREMPRKGCKPDVYTFNSLISG 497
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++P PD++T+N L+ LC+ + + M S G+ N VTY LI+
Sbjct: 475 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM-ISEGVVANTVTYNTLINAF 533
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA +LV+ + G D YN+++KG
Sbjct: 534 LRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKG 567
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ K + + MR G KPN+ +YTIL+D C + EA
Sbjct: 381 PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNK-GCKPNVYSYTILVDGFCKLGKIDEAYN 439
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ +S G KP+ +N ++ +
Sbjct: 440 LLNEMSADGLKPNTVGFNCLISAF 463
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + N L+ LC+ + F +M G P++VT+ LI+ +C + +
Sbjct: 589 LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLR-GSTPDIVTFNSLINGLCRAGRIEDG 647
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + L G PD YNT+M
Sbjct: 648 LTMFRKLQAEGIPPDTVTYNTLM 670
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++PP +FT+ ++K LC + + + + M G PN V Y LI ++
Sbjct: 202 MLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKH-GCVPNSVIYQTLIHSLSKCN 260
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L+ + G PD +N ++ G
Sbjct: 261 RVNEALQLLEEMFLMGCVPDAETFNDVILG 290
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ D TYN L+K LC+ + + ++M G+ P+ ++ ILI+ +C +
Sbjct: 549 MVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD-GLVPSSISCNILINGLCRSG 607
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + G PD +N+++ G
Sbjct: 608 MVEEAVEFQKEMVLRGSTPDIVTFNSLING 637
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI T+N L+ LC+ + +++A GI P+ VTY L+ +C
Sbjct: 619 MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE-GIPPDTVTYNTLMSWLCKGG 677
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +A L+ + GF P+ ++ +++
Sbjct: 678 FVYDACLLLDEGIEDGFVPNDRTWSILLQ 706
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ L KC + +++M +G P+ T+ +I +C + EA +
Sbjct: 244 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFL-MGCVPDAETFNDVILGLCKFDRINEAAK 302
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V+ + GF PD Y +M G
Sbjct: 303 MVNRMLIRGFTPDDITYGYLMNG 325
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD TY +L+ LCK + + ++ KP V + LI
Sbjct: 307 MLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP-----KPTSVIFNTLIHGFVTHG 361
Query: 61 NLREAMRLVSALSDS-GFKPDCFVYNTIMKGY 91
L +A ++S + S G PD YN+++ GY
Sbjct: 362 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY 393
>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
Length = 213
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I TYN L+ LCK L+ N ++++ S GI PN +TY LID C EA
Sbjct: 40 LTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQ-SKGISPNGITYNTLIDEYCKEGKTTEA 98
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + + G +P Y+ ++ G
Sbjct: 99 FKLKQKMVEEGIQPTVITYSILIYG 123
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD FTY+ L+ S+ ++ D M S G+ PN++TY LI +C + L
Sbjct: 3 KRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVM-LSAGLTPNIITYNSLIYGLCKSGKLS 61
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L + L G P+ YNT++ Y
Sbjct: 62 RAVNLFNKLQSKGISPNGITYNTLIDEY 89
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN L+ CK T + +M GI+P ++TY+ILI +C +
Sbjct: 73 KGISPNGITYNTLIDEYCKEGKTTEAFKLKQKM-VEEGIQPTVITYSILIYGLCTQGYME 131
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++L+ + ++ P+ Y T++ GY
Sbjct: 132 EAIKLLDQMIENNVDPNYITYCTLIHGY 159
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TY+ L+ LC + +DQM + + PN +TY LI +
Sbjct: 105 MVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIEN-NVDPNYITYCTLIHGYIKSG 163
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
N+ E +L + G P ++ N
Sbjct: 164 NMEEISKLYDEMHIRGLLPTNWIGN 188
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +T+N L+ K + + +V+ ++M+ + PN++TY+ILID VC + +A
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQ-NQNCSPNVITYSILIDAVCKCGGVEKA 178
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G +P+ F Y +++ G
Sbjct: 179 LKVFLDMKSRGCRPNIFTYTSMIDG 203
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 35/119 (29%)
Query: 6 LPPDIFTYNFLVKCLCK------------------CRSLTTVYN-FVDQMRAS------- 39
L PD++T+N L+ LCK C TVYN +D +R S
Sbjct: 330 LVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAG 389
Query: 40 --------LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LG +P++VTY LID C + +A+RL +S GF + YNTI+ G
Sbjct: 390 QLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFA-NTVTYNTILNG 447
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L+ LCK + L + ++ G+ P++ T+ L+D +C + + +A L
Sbjct: 298 DVNLYNVLIDTLCKSKRLDEAWEIFGELEED-GLVPDVYTFNALMDGLCKSGRIHDAFIL 356
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + +G PD VYNT++ G
Sbjct: 357 LGDMKRAGCTPDVTVYNTLIDG 378
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ +CKC + M+ S G +PN+ TYT +ID + + ++ +A
Sbjct: 157 PNVITYSILIDAVCKCGGVEKALKVFLDMK-SRGCRPNIFTYTSMIDGLGKSGHVDKAFF 215
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ G VYN+++ G
Sbjct: 216 LFEEMTSEGLVATRVVYNSLIHG 238
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD T+ LV L + + R +G ++ Y +LID +C +K
Sbjct: 255 MLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEAR-DVGCALDVNLYNVLIDTLCKSK 313
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA + L + G PD + +N +M G
Sbjct: 314 RLDEAWEIFGELEEDGLVPDVYTFNALMDG 343
>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TYN +V C+ + + + +M+ I+P +VTYT LI + +
Sbjct: 179 REIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGR-NIEPTVVTYTTLIKGYVSVDRVD 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+RLV + G KP+ Y+T++ G
Sbjct: 238 DALRLVEEMKGFGMKPNAITYSTLLPG 264
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + TY L+K + V++M+ G+KPN +TY+ L+ +CN + +
Sbjct: 214 RNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKG-FGMKPNAITYSTLLPGLCNAEKMS 272
Query: 64 EAMRLVSALSDSGFKP 79
EA ++ + + P
Sbjct: 273 EARSILKEMVEKYIAP 288
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P T+N ++ + T F + M+ S I P++VTY +++ C K
Sbjct: 141 MLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMK-SREIMPDVVTYNTMVNGYCRVK 199
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + +P Y T++KGY
Sbjct: 200 KMEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY+ L+ LCK + +M + G+ PN VT+T LID C T ++ AM
Sbjct: 204 PDVYTYSVLINGLCKESKMNDANELFGEMIGN-GLVPNGVTFTTLIDGHCKTGSIDLAME 262
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ GF PD YNT++ G
Sbjct: 263 TYKEMLRQGFSPDLITYNTLIYG 285
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK L + +D+M G+KP+ +TYT LID C +L A+
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMK-GLKPDKITYTTLIDGSCKEGDLETALY 332
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D Y ++ G
Sbjct: 333 YRKRMIKENIRLDDVAYTALISG 355
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L P+ T+ L+ CK S+ +M G P+L+TY LI +C
Sbjct: 232 MIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQ-GFSPDLITYNTLIYGLCKKG 290
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L++A L+ +S G KPD Y T++ G
Sbjct: 291 DLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D++ G++P++V++ L++ +L E
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDEI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ SG +PD + Y+ ++ G
Sbjct: 192 RLKSAMHASGVQPDVYTYSVLING 215
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ + L + M AS G++P++ TY++LI+ +C + +A
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMNDA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G P+ + T++ G+
Sbjct: 226 NELFGEMIGNGLVPNGVTFTTLIDGH 251
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL----VTYTILIDNVCNT 59
K L PD TY L+ CK L T + +M IK N+ V YT LI +C
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETALYYRKRM-----IKENIRLDDVAYTALISGLCRE 359
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ + G KPD Y I+ +
Sbjct: 360 GQSVDAEKMLREMLSVGLKPDNGTYTMIINEF 391
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LC R L +DQ+ P ++TYTILI+ + EAM+
Sbjct: 170 PDIVTYNIMIGSLCNRRKLGLALKVLDQLLLD-NCMPTVITYTILIEATIVEGGINEAMK 228
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G PD + YN I++G
Sbjct: 229 LLEEMLARGLLPDMYTYNAIIRG 251
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD TYN L+ CLC+ + +D M S G +P +++Y I++ +C +
Sbjct: 443 MISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQS-GFRPTVISYNIVLLGLCKVR 501
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + + + + G +P+ Y +++G
Sbjct: 502 RIDDAIGMFAEMIEKGCRPNETTYILLIEG 531
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ +YN ++ L C + V M S G+ P+ +TY LI +C + EA+
Sbjct: 414 PPNVSSYNTMISALWSCGDRSRALGMVPAM-ISKGVDPDEITYNSLISCLCRDGLVEEAI 472
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + SGF+P YN ++ G
Sbjct: 473 GLLDDMEQSGFRPTVISYNIVLLG 496
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L PD ++Y+ L+ LCK L +D M S G P++V Y ++ +C
Sbjct: 338 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM-ISNGCLPDIVNYNTILAALCKNG 396
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N +A+ + + L G P+ YNT++
Sbjct: 397 NANQALEIFNKLRGMGCPPNVSSYNTMISA 426
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + +++M A G+ P++ TY +I +C + A
Sbjct: 205 PTVITYTILIEATIVEGGINEAMKLLEEMLAR-GLLPDMYTYNAIIRGMCKEGMVERAAE 263
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+++L+ G KPD YN +++ +
Sbjct: 264 LITSLTSKGCKPDVISYNILLRAF 287
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD+ +YN L++ V +M S G +PN VTY+ILI ++C
Sbjct: 268 LTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEM-FSRGCEPNKVTYSILISSLCRFG 326
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ ++ + + PD + Y+ ++
Sbjct: 327 RIDEAISVLKVMIEKELTPDTYSYDPLISA 356
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ LCK + +++R +G PN+ +Y +I + + + A+
Sbjct: 380 PDIVNYNTILAALCKNGNANQALEIFNKLRG-MGCPPNVSSYNTMISALWSCGDRSRALG 438
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V A+ G PD YN+++
Sbjct: 439 MVPAMISKGVDPDEITYNSLI 459
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +YN ++ LCK R + +M G +PN TY +LI+ + EAM
Sbjct: 485 PTVISYNIVLLGLCKVRRIDDAIGMFAEM-IEKGCRPNETTYILLIEGIGFAGWRTEAME 543
Query: 68 LVSAL 72
L ++L
Sbjct: 544 LANSL 548
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 7 PPDIFTYNF----LVKCL---CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
P + +Y+F L+K L CK F++ + + G P+++ T LI N
Sbjct: 58 PAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECL-VNKGYTPDVILCTKLIKGFFNF 116
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KN+ +A R++ L +S +PD F YN ++ G+
Sbjct: 117 KNIEKASRVMEIL-ESHTEPDVFAYNAVISGF 147
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-GIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN LV LC+ + +N V M + + P++VTYT L+ C + + EA+
Sbjct: 201 PDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEAL 260
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP+ YNT++KG
Sbjct: 261 VVFEEMVSRGLKPNDITYNTLIKG 284
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TY LV+ C + + ++M S G+KPN +TY LI +C +
Sbjct: 234 KDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEM-VSRGLKPNDITYNTLIKGLCEVQKFD 292
Query: 64 EAMRLV-SALSDSGFKPDCFVYNTIM 88
+ ++ A+ GF PD YNT+M
Sbjct: 293 KIKEILGGAVGGRGFVPDTCTYNTLM 318
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+N L++ CK + + F +M + +P++VTY L+D +C +R A
Sbjct: 166 PDTYTFNILIRGFCKNSMVDEGFRFFKEM-SRFNCEPDVVTYNTLVDGLCRAGKVRIAHN 224
Query: 68 LVSALSD--SGFKPDCFVYNTIMKGY 91
+V + PD Y T+++GY
Sbjct: 225 VVKGMVKKMKDLSPDVVTYTTLVRGY 250
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ TYN L+K LC+ + + + G P+ TY L++ C+
Sbjct: 266 MVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAG 325
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N EA+++ + + +PD Y+ +++
Sbjct: 326 NFDEALKMFKKMKELKVQPDSATYSVLIR 354
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K ++ D+M + G+ P+ T+ ILI C + E
Sbjct: 128 VSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEG 187
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R +S +PD YNT++ G
Sbjct: 188 FRFFKEMSRFNCEPDVVTYNTLVDG 212
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ C + +M+ L ++P+ TY++LI N+C + A +
Sbjct: 309 PDTCTYNTLMNAQCDAGNFDEALKMFKKMK-ELKVQPDSATYSVLIRNLCQRGDFERAEQ 367
Query: 68 LVSALSDS 75
L LSD
Sbjct: 368 LFDKLSDE 375
>gi|15221069|ref|NP_172629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200551|sp|Q9SAB4.1|PPR33_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g11630, mitochondrial; Flags: Precursor
gi|4835794|gb|AAD30260.1|AC007296_21 Strong similarity to gi|3367521 F8K4.8 from Arabidopsis thaliana
BAC gb|AC004392 [Arabidopsis thaliana]
gi|14326576|gb|AAK60332.1|AF385742_1 At1g11630/F25C20_22 [Arabidopsis thaliana]
gi|19548051|gb|AAL87389.1| At1g11630/F25C20_22 [Arabidopsis thaliana]
gi|21593339|gb|AAM65288.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|332190642|gb|AEE28763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 405
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN +++CLCK + +D + S ++PN VTY++LI C+ +NL EAM L
Sbjct: 252 VATYNIMIQCLCKRKKSAEAKALIDGV-MSCRMRPNSVTYSLLIHGFCSEENLDEAMNLF 310
Query: 70 SALSDSGFKPDCFVYNTIM 88
+ +G+KPD Y T++
Sbjct: 311 EVMVCNGYKPDSECYFTLI 329
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC+ S ++ Y+ V +M IKP ++ ++ID + E
Sbjct: 178 IEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKW-IKPTAASFGLMIDGFYKEEKFDEV 236
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+++ + + G YN +++
Sbjct: 237 RKVMRMMDEFGVHVGVATYNIMIQ 260
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+I TYN ++ LC + Y D+M + G+ PNL++ I++D +C L
Sbjct: 379 KDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELA-GLFPNLLSVNIMVDRLCKANQLE 437
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA R+ + S+ G P+ Y +++ G
Sbjct: 438 EAHRIFESASERGCNPNSVTYCSLIDG 464
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI YN + C K S+ + F +++A G++P+ V+YT ++ +C L EA
Sbjct: 242 LEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAH-GLRPDDVSYTSMVWVLCKAGRLGEA 300
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + P + YNT++ GY
Sbjct: 301 EELFGQMEAERDVPCAYAYNTMIMGY 326
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TY+ L+ LC+ + + F +M+ G+ PN+VTYT +I + N+ +A
Sbjct: 733 PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQ-GLIPNVVTYTTMISGLAKVGNITDAYS 791
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +G PD +N +++G
Sbjct: 792 LFERFKTNGGIPDSASFNALIEG 814
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+++T+N L+ L K + M+ + PN TY+ILI+ +C +
Sbjct: 691 MMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMK-EMKCSPNTYTYSILINGLCRVQ 749
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + G P+ Y T++ G
Sbjct: 750 KYNKAFVFWQEMQKQGLIPNVVTYTTMISG 779
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ + N +V LCK L + + + G PN VTY LID + + +A
Sbjct: 416 LFPNLLSVNIMVDRLCKANQLEEAHRIFESA-SERGCNPNSVTYCSLIDGLGKKGKIDDA 474
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL + D+G + +Y ++++ +
Sbjct: 475 YRLFEKMLDAGHDANPIIYTSLIRNF 500
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + TY +V L K L Y ++ + S GI+ N++ Y+ LID +
Sbjct: 624 KHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAK-SKGIELNVILYSSLIDGFGKVGRID 682
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA ++ + G P+ + +N++M
Sbjct: 683 EAYLILEEMMKKGLTPNVYTWNSLM 707
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ N + C+ K + + M+ S G P++ +Y+ILI + RE
Sbjct: 523 PDLTLLNTYMDCVFKAGEVEKGRAIFEDMK-SFGFLPDVRSYSILIHGLTKAGQARETSN 581
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ A+S GF D YN ++ G
Sbjct: 582 IFQAMSQQGFALDARAYNAVVDG 604
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN +V LCK + Y +++M+ + P + TY ++D + L EA L
Sbjct: 594 DARAYNAVVDGLCKSGKVDKAYEVLEEMKVK-HVHPTVATYGSIVDGLAKIDRLDEAYML 652
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
G + + +Y++++ G+
Sbjct: 653 FEEAKSKGIELNVILYSSLIDGF 675
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ +V CL K L Y +M + G PNLVTY I+I +N
Sbjct: 461 LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIEN-GCTPNLVTYNIMIALQAKARNYENV 519
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + +GF+PD Y+ +M+
Sbjct: 520 VKLYKDMQVAGFRPDKITYSIVME 543
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ + L ++M+ + G +P+ VTY LID L AM
Sbjct: 393 PTVVTYNRIIHAYGRANYLKEAVKVFEEMQEA-GYEPDRVTYCTLIDIHAKAGYLDIAMD 451
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + G PD F Y+ ++
Sbjct: 452 LYGRMQEVGLSPDTFTYSAMV 472
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY ++ L + R + +D+M + KP +VTY +I L+EA+++
Sbjct: 359 DGHTYTTMIGILGQARQFGVLKKLLDEMSRA-HCKPTVVTYNRIIHAYGRANYLKEAVKV 417
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ ++G++PD Y T++
Sbjct: 418 FEEMQEAGYEPDRVTYCTLI 437
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +Y+ LV LCK + T Y+ + +M A GI P LV+Y+ L+ +C + A
Sbjct: 312 LVPDTHSYSILVDGLCKQGDVLTGYDLLVEM-ARNGIAPTLVSYSSLLHGLCRAGKVELA 370
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L L + GFK D VY+ I+ G
Sbjct: 371 FELFRRLEEQGFKHDHIVYSIILNG 395
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ Y ++ LCK V+ F D ++ G P+ V Y+I+ID+ L EA
Sbjct: 489 PNLCMYRVIINGLCKVNKSDHVWGIFADMIKR--GYVPDTVVYSIIIDSFVKALKLPEAF 546
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + D G KP+ F Y +++ G
Sbjct: 547 RLFHKMLDEGTKPNVFTYTSLING 570
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD + Y L+ C+ R+LT + M S G+ PN+VT TIL+D +
Sbjct: 412 MVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDS-GVSPNVVTCTILVDGFGKER 470
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA + + G P+ +Y I+ G
Sbjct: 471 MIDEAFLFLHKVRQFGIVPNLCMYRVIING 500
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FTY L+ LC L V M G+ P+ + YT LI C N++ A+
Sbjct: 559 PNVFTYTSLINGLCHDDRLPEVVTLFKHMIWE-GLTPDRILYTSLIVCYCKRSNMKAALE 617
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G D F+Y ++ G+
Sbjct: 618 IFRGMGKLGLSADAFLYTCLIGGF 641
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD Y+ ++ K L + +M G KPN+ TYT LI+ +C+
Sbjct: 517 MIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDE-GTKPNVFTYTSLINGLCHDD 575
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L E + L + G PD +Y +++ Y
Sbjct: 576 RLPEVVTLFKHMIWEGLTPDRILYTSLIVCY 606
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL--REAMRLVSA 71
NFL+KCL + + + D M++S G PN+ +Y++L+ + L EA L+S
Sbjct: 178 NFLLKCLVERNQIIYARSLFDDMKSS-GPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSE 236
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ G KP+ Y T + G
Sbjct: 237 MEMKGVKPNAATYGTYLYG 255
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TY + L + R + + +NF+ QM G N + +I C ++
Sbjct: 240 KGVKPNAATYGTYLYGLSRTRQVASAWNFL-QMLCQRGNPCNTYCFNAVIQGFCREGQVQ 298
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + A+ G PD Y+ ++ G
Sbjct: 299 EAIEVFDAMKKGGLVPDTHSYSILVDG 325
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ T LV K R + + F+ ++R GI PNL Y ++I+ +C
Sbjct: 452 VSPNVVTCTILVDGFGKERMIDEAFLFLHKVR-QFGIVPNLCMYRVIINGLCKVNKSDHV 510
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G+ PD VY+ I+ +
Sbjct: 511 WGIFADMIKRGYVPDTVVYSIIIDSF 536
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + + +N +++ C+ + D M+ G+ P+ +Y+IL+D +C ++
Sbjct: 278 PCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKG-GLVPDTHSYSILVDGLCKQGDVLTGY 336
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G P Y++++ G
Sbjct: 337 DLLVEMARNGIAPTLVSYSSLLHG 360
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I++ L PD Y L+ C CK ++ M LG+ + YT LI
Sbjct: 587 MIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGM-GKLGLSADAFLYTCLIGGFSKVL 645
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A L+ +++ G P Y ++ GY
Sbjct: 646 AMDGAQCLMEEMTNKGLTPSVVTYTNLIIGY 676
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + +Y+ L+ LC+ + + ++ G K + + Y+I+++ C N+
Sbjct: 347 IAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQ-GFKHDHIVYSIILNGCCQHLNIEVV 405
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + F PD + Y +++ +
Sbjct: 406 CDLWNDMVHHNFVPDAYNYTSLIYAF 431
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD+ Y LV+ C+ +++ +M+ + GIKPN+ TY+I+ID++C +
Sbjct: 246 KFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVA-GIKPNVYTYSIVIDSLCRCGQITR 304
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A + + + D+G +P+ YN++M+
Sbjct: 305 AHDVFAEMLDAGCQPNSITYNSLMR 329
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++ L+ LC+ R + F D ++ +P+++ YT L+ C N+ EA R
Sbjct: 215 PDKIAFSILISILCRKRRASEAQEFFDSLKDKF--EPDVIVYTNLVRGWCRAGNISEAER 272
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +G KP+ + Y+ ++
Sbjct: 273 VFGEMKVAGIKPNVYTYSIVI 293
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+++TY+ ++ LC+C +T ++ +M + G +PN +TY L+ +
Sbjct: 282 IKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDA-GCQPNSITYNSLMRIHVKAGRTEKV 340
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + G +PD YN +++ +
Sbjct: 341 LQVYNQMKRLGCEPDTVTYNFLIETH 366
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KP+ + ++ILI +C + EA +L D F+PD VY +++G+
Sbjct: 214 KPDKIAFSILISILCRKRRASEAQEFFDSLKDK-FEPDVIVYTNLVRGW 261
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN L+ +V +D+M+ + G+K +LVTY +LI +C +R
Sbjct: 394 KGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKET-GVKADLVTYNVLIGALCCKGEVR 452
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L+ + + G +P YN I+ G+
Sbjct: 453 KAVKLLDEMVEVGLEPKHRTYNAIINGF 480
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 35/120 (29%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ T+N L+ CK ++T ++MR GI N+VTYT L+ +C + ++
Sbjct: 257 ISPNVVTFNVLINGYCKESNITAAIKVFEEMRQH-GIPANMVTYTSLVSGLCREGKVEDS 315
Query: 66 MRLVS----------------------------------ALSDSGFKPDCFVYNTIMKGY 91
M+LV ++ G KP+ YNT++ GY
Sbjct: 316 MKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGY 375
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N ++ CK + +VD M A G+KPN+VTY LID ++EA A
Sbjct: 332 TLNSVLNGFCKKGMMVEAEGWVDGM-AQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGA 390
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
++ G PD YN ++ G+
Sbjct: 391 MAGKGISPDVKTYNCLITGF 410
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN---TKNLRE 64
PD FT+N ++ LCK L + MR G+ P++VTY LID +
Sbjct: 186 PDKFTFNIVISGLCKTGQLRKAGDVAKDMRG-WGLMPSVVTYNTLIDGYYKWGRAGKMYH 244
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ +G P+ +N ++ GY
Sbjct: 245 VDMLLKEMNQAGISPNVVTFNVLINGY 271
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVCNTKNL 62
L P + TYN L+ K +Y+ VD + + GI PN+VT+ +LI+ C N+
Sbjct: 219 LMPSVVTYNTLIDGYYKWGRAGKMYH-VDMLLKEMNQAGISPNVVTFNVLINGYCKESNI 277
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+++ + G + Y +++ G
Sbjct: 278 TAAIKVFEEMRQHGIPANMVTYTSLVSG 305
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ P+ T+ I+I +C T LR+A + + G P YNT++ GY
Sbjct: 184 VSPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGY 233
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 4 KQLPPDIFTYNFLV---KCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K + P++ TYN L+ + L K + T + A GI P++ TY LI +
Sbjct: 359 KGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAM----AGKGISPDVKTYNCLITGFTTST 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ R L+ + ++G K D YN ++
Sbjct: 415 DWRSVSGLLDEMKETGVKADLVTYNVLI 442
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LC R L +DQ+ P ++TYTILI+ + EAM+
Sbjct: 180 PDIVTYNIMIGSLCNRRKLGLALTVLDQLLLD-NCMPTVITYTILIEATIVEGGINEAMK 238
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G PD + YN I++G
Sbjct: 239 LLEEMLARGLLPDMYTYNAIIRG 261
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP++ +YN ++ L C + V M S GI P+ +TY LI +C + EA+
Sbjct: 424 PPNVSSYNTMISALWSCGDRSRALGMVPAM-ISKGIDPDEITYNSLISCLCRDGLVEEAI 482
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + SGF+P YN ++ G
Sbjct: 483 GLLDDMEQSGFRPTVISYNIVLLG 506
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD TYN L+ CLC+ + +D M S G +P +++Y I++ +C +
Sbjct: 453 MISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQS-GFRPTVISYNIVLLGLCKVR 511
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + + + + G +P+ Y +++G
Sbjct: 512 RIDDAIGMFAEMIEKGCRPNETTYILLIEG 541
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L PD ++Y+ L+ LCK L +D M S G P++V Y ++ +C
Sbjct: 348 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM-ISNGCLPDIVNYNTILAALCKNG 406
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N +A+ + + L G P+ YNT++
Sbjct: 407 NANQALEIFNKLRGMGCPPNVSSYNTMISA 436
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD+ +YN L++ V +M S G +PN VTY+ILI ++C
Sbjct: 278 LTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEM-FSRGCEPNKVTYSILISSLCRFG 336
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ ++ + + PD + Y+ ++
Sbjct: 337 RIDEAISVLKVMIEKELTPDTYSYDPLISA 366
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ LCK + +++R +G PN+ +Y +I + + + A+
Sbjct: 390 PDIVNYNTILAALCKNGNANQALEIFNKLRG-MGCPPNVSSYNTMISALWSCGDRSRALG 448
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V A+ G PD YN+++
Sbjct: 449 MVPAMISKGIDPDEITYNSLI 469
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + +++M A G+ P++ TY +I +C + A
Sbjct: 215 PTVITYTILIEATIVEGGINEAMKLLEEMLAR-GLLPDMYTYNAIIRGMCKEGMVERAAE 273
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+++L+ G +PD YN +++ +
Sbjct: 274 LITSLTSKGCEPDVISYNILLRAF 297
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +YN ++ LCK R + +M G +PN TY +LI+ + EAM
Sbjct: 495 PTVISYNIVLLGLCKVRRIDDAIGMFAEM-IEKGCRPNETTYILLIEGIGFAGWRTEAME 553
Query: 68 LVSAL 72
L ++L
Sbjct: 554 LANSL 558
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 7 PPDIFTYNF----LVKCL---CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
P + +Y+F L+K L CK F++ + + G P+++ T LI N
Sbjct: 68 PAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECL-VNKGYTPDVILCTKLIKGFFNF 126
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KN+ +A R++ L +S +PD F YN ++ G+
Sbjct: 127 KNIEKASRVMEIL-ESHTEPDVFAYNAVISGF 157
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLC-KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD +TYN L++ LC + R+ + D +R G P++VTYTIL++ C ++
Sbjct: 148 MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRR--GCVPDVVTYTILLEATCKRSGYKQ 205
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A++L+ + D G PD YN ++ G
Sbjct: 206 AVKLLDEMRDKGCAPDIVTYNVVVNG 231
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ CK +D+MR G P++VTY ++++ +C + +AM
Sbjct: 185 PDVVTYTILLEATCKRSGYKQAVKLLDEMRDK-GCAPDIVTYNVVVNGICQEGRVDDAME 243
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +L G +P+ YN ++KG
Sbjct: 244 FLKSLPSYGCEPNTVSYNIVLKG 266
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP++ T+N L+ LC+ + +DQ+ G PN ++Y ++ C K +
Sbjct: 286 KGRPPNVVTFNMLISFLCRRGLVEPAMEILDQI-PKYGCTPNSLSYNPILHAFCKQKKMD 344
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
AM V + SG PD YNT++
Sbjct: 345 RAMAFVELMVSSGCYPDIVSYNTLL 369
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I Q+P P+ +YN ++ CK + + FV+ M +S G P++V+Y L+ +
Sbjct: 314 ILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSS-GCYPDIVSYNTLLTAL 372
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A+ L+ L D G P YNT++ G
Sbjct: 373 CRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 406
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN +V +C+ + F+ + S G +PN V+Y I++ +C +
Sbjct: 216 KGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSL-PSYGCEPNTVSYNIVLKGLCTAERWE 274
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A +L++ +S G P+ +N ++
Sbjct: 275 DAEKLMAEMSRKGRPPNVVTFNMLI 299
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + +YN ++ L K +++M + G++P+++TY+ + +C +
Sbjct: 391 KGCTPVLISYNTVIDGLTKAGKTEEALELLNEM-VTKGLQPDIITYSTISSGLCREGRIE 449
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++ + D G +P+ +YN I+ G
Sbjct: 450 EAIKAFCKVQDMGIRPNTVLYNAILLG 476
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 3 FKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
K LP P+ +YN ++K LC + +M + G PN+VT+ +LI +C
Sbjct: 245 LKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEM-SRKGRPPNVVTFNMLISFLC 303
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ AM ++ + G P+ YN I+ +
Sbjct: 304 RRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAF 337
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PDI TY+ + LC+ + +++ +GI+PN V Y ++ +C +
Sbjct: 423 MVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQ-DMGIRPNTVLYNAILLGLCKRR 481
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + + +G P+ Y +++G
Sbjct: 482 ATHSAIDLFTYMVSNGCMPNESTYTILIEG 511
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+P++++Y ++ C T L A RLV+A+ +PD + YNT+++G
Sbjct: 117 EPDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRG 161
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN +V C L V A++ ++P+ TY LI +C A+
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRLV----AAMPMEPDTYTYNTLIRGLCGRGRTDNALA 173
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G PD Y +++
Sbjct: 174 VLDDMLRRGCVPDVVTYTILLEA 196
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN ++ LCK R+ + + M S G PN TYTILI+ + ++EA
Sbjct: 465 PNTVLYNAILLGLCKRRATHSAIDLFTYM-VSNGCMPNESTYTILIEGLAYEGLVKEARE 523
Query: 68 LVSALSDSG 76
+++ L G
Sbjct: 524 MMAELCSRG 532
>gi|255661004|gb|ACU25671.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 369
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPDI TYN L+ L K Y+ V +M G+ P+++TY++L+ +C + A+
Sbjct: 196 PPDIVTYNILINGLFKGDRFGEAYDLVKEMLEK-GLDPSVITYSLLMKGLCLGDKVEMAL 254
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L + ++ GFKPD ++N ++ G
Sbjct: 255 QLWNQVTKKGFKPDVQMHNILIHG 278
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F Y+ ++ LCK L ++ M S G KPN Y LI + L +A+R+
Sbjct: 128 DAFAYSAMINALCKEAKLEKAVCVLNGMIKS-GCKPNTCVYNALIKGLVGASKLDDAIRV 186
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + PD YN ++ G
Sbjct: 187 FHEMGTTHSPPDIVTYNILING 208
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P + TY+ L+K LC + +Q+ G KP++ + ILI +C+
Sbjct: 225 MLEKGLDPSVITYSLLMKGLCLGDKVEMALQLWNQVTKK-GFKPDVQMHNILIHGLCSVG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ L ++ P+ NT+M+G+
Sbjct: 284 KTQLALSLYLDMNRWNCAPNLVTQNTLMQGF 314
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK R + ++ G+ + Y+ +I+ +C L +A+ +
Sbjct: 93 DSKTYGTLVNGFCKNRYINKSLQVLEIAEQKGGVL-DAFAYSAMINALCKEAKLEKAVCV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYN ++KG
Sbjct: 152 LNGMIKSGCKPNTCVYNALIKG 173
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC ++ + ++D R + PNLVT L+ N+
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCA--PNLVTQNTLMQGFYKDGNI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + + +PD YN +KG
Sbjct: 321 RNALVIWARILRNELQPDIISYNITLKG 348
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD+ TY L++ C + +D+M S G KP++VTY +L++ +C L
Sbjct: 10 KECYPDVITYTILIEATCAESGVGQAMKLLDEM-GSRGCKPDVVTYNVLVNGMCKEGRLD 68
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA++ ++++ G +P+ +N I++
Sbjct: 69 EAIKFLNSMPSYGSQPNVITHNIILR 94
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK + ++Q+ +S G P L+TY +ID + +A+
Sbjct: 189 PDIVTYNTMLTALCKDGKVDAAVELLNQL-SSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G KPD Y++++ G
Sbjct: 248 LLHEMRGKGLKPDVITYSSLIAG 270
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TYN ++ L K + +MR G+KP+++TY+ LI + +
Sbjct: 220 KGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGK-GLKPDVITYSSLIAGLSREGKVE 278
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++ + G KP+ F YN+IM G
Sbjct: 279 EAIKFFHDVEGFGVKPNAFTYNSIMFG 305
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV +CK L F++ M S G +PN++T+ I++ ++C+T +A +
Sbjct: 49 PDVVTYNVLVNGMCKEGRLDEAIKFLNSM-PSYGSQPNVITHNIILRSMCSTGRWMDAEK 107
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + G P +N ++
Sbjct: 108 LLTEMVRKGCSPSVVTFNILI 128
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTYN ++ LCK + +F+ M S G KP V+YTILI+ + N +EA+
Sbjct: 294 PNAFTYNSIMFGLCKAQQTDRAIDFLAYM-ISKGCKPTEVSYTILIEGIANEGLAKEALE 352
Query: 68 LVSALSDSG 76
L++ L G
Sbjct: 353 LLNELCSRG 361
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I +++P P+ +YN L+ CK + + +++ M S G P++VTY ++ +
Sbjct: 143 ILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIM-VSRGCYPDIVTYNTMLTAL 201
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A+ L++ LS G P YNT++ G
Sbjct: 202 CKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDG 235
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
P+++TYTILI+ C + +AM+L+ + G KPD YN ++ G
Sbjct: 14 PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + T+N L+ LC+ L + +++M + G PN ++Y L+ C K
Sbjct: 112 MVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM-PTHGCTPNSLSYNPLLHGFCKEK 170
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A++ + + G PD YNT++
Sbjct: 171 KMDRAIQYLEIMVSRGCYPDIVTYNTML 198
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N +++ +C + +M G P++VT+ ILI+ +C L A+
Sbjct: 84 PNVITHNIILRSMCSTGRWMDAEKLLTEM-VRKGCSPSVVTFNILINFLCRKGLLGRAID 142
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P+ YN ++ G+
Sbjct: 143 ILEKMPTHGCTPNSLSYNPLLHGF 166
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TY+ L+ L + + F + G+KPN TY ++ +C +
Sbjct: 255 KGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEG-FGVKPNAFTYNSIMFGLCKAQQTD 313
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + G KP Y +++G
Sbjct: 314 RAIDFLAYMISKGCKPTEVSYTILIEG 340
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+K CK L D +++S G P++VTYT +I C ++EA
Sbjct: 239 PDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASV 298
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G P +N ++ GY
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGY 322
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L+ C+ + + ++M A G+ PN TY+ILI+ +C L +A
Sbjct: 345 PDVVTFTSLIDGYCRVGQVNQGFRLWEEMNAR-GMFPNAFTYSILINALCKENRLLKARE 403
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ L+ P F+YN ++ G+
Sbjct: 404 LLGQLASKDIIPQPFMYNPVIDGF 427
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY+ L+ LCK L + Q+ AS I P Y +ID C + EA+
Sbjct: 380 PNAFTYSILINALCKENRLLKARELLGQL-ASKDIIPQPFMYNPVIDGFCKAGKVNEAIV 438
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + KPD + ++ G+
Sbjct: 439 IVEEMEKKKCKPDKITFTILIIGH 462
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T+N LV K + T +M S G P++VT+T LID C + + R
Sbjct: 310 PTNVTFNVLVDGYAKAGEMHTAEEIRGKM-ISFGCFPDVVTFTSLIDGYCRVGQVNQGFR 368
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ G P+ F Y+ ++
Sbjct: 369 LWEEMNARGMFPNAFTYSILI 389
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY ++ CK + +D M LGI P VT+ +L+D + A
Sbjct: 275 PDVVTYTSMISGYCKAGKMQEASVLLDDM-LRLGIYPTNVTFNVLVDGYAKAGEMHTAEE 333
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD + +++ GY
Sbjct: 334 IRGKMISFGCFPDVVTFTSLIDGY 357
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 48 TYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
T+ ILI +C +A+ L+ +S G PD YNT++KG+
Sbjct: 208 TFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGF 251
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + P F YN ++ CK + V++M KP+ +T+TILI C
Sbjct: 408 LASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKK-KCKPDKITFTILIIGHCMKG 466
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+ + + G PD ++++
Sbjct: 467 RMFEAVSIFHKMVAIGCSPDKITVSSLL 494
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++TY+ + C C+ L+ + +M LG +P++VT + L++ C++K + +A
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKM-MKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G+KPD F + T++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHG 197
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+FTY+ L+ CLC + + M I PN+VT++ LID L
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLV 345
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGF 373
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++FKQ+ P+I TYN L+ LCK L + ++ S ++P++ TY I+I+
Sbjct: 454 MVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST-MEPDIYTYNIMIEG 512
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C + + L LS G P+ YNT++ G+
Sbjct: 513 MCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGF 548
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY+ LI C K
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYSTLIKGFCKAK 412
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E M L +S G + Y T++ G+
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ TY +V LCK + + + +M I+ ++V Y +ID +C K
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYNTIIDGLCKYK 272
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +A+ L + + + G +PD F Y++++
Sbjct: 273 HMDDALNLFTEMDNKGIRPDVFTYSSLI 300
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TY L+ + R QM S+G+ PN++TY IL+D +C L
Sbjct: 427 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM-VSVGVHPNILTYNILLDGLCKNGKLA 485
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM + L S +PD + YN +++G
Sbjct: 486 KAMVVFEYLQRSTMEPDIYTYNIMIEG 512
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM +G KP+ T+T LI + EA+
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQM-VEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
LV + G +PD Y T++ G
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNG 232
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+ L+ L + VDQM G +P+LVTY +++ +C ++ A+
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQM-VQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + D +YNTI+ G
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDG 267
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K V + +QM+ +LGI +L TY+I I+ C L A+
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQ-TLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G++PD ++++ GY
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGY 163
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ D+ YN ++ LCK + + N +M GI+P++ TY+ LI +CN +
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK-GIRPDVFTYSSLISCLCNYGRWSD 311
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + P+ ++ ++ +
Sbjct: 312 ASRLLSDMIERKINPNVVTFSALIDAF 338
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TY+ L+K CK + + +M + G+ N VTYT LI +
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYTTLIHGFFQAR 447
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + G P+ YN ++ G
Sbjct: 448 DCDNAQMVFKQMVSVGVHPNILTYNILLDG 477
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L D+M I P++ TY+ LI+ C
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 377
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ Y+T++KG+
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P + +TY+ L+ C C+ L + +M LG +P++VT + L++ C+ K + EA
Sbjct: 112 IPHNHYTYSILLNCFCRRSQLPLALAVLGKM-MKLGYEPDIVTLSSLLNGYCHGKRISEA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G+KPD +NT++ G
Sbjct: 171 VALVDQMVEMGYKPDTVTFNTLIHG 195
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PPDI TY+ L+ LCK L + ++ S ++PN+ TY I+I+ +
Sbjct: 453 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS-KMEPNIYTYNIMIEGM 511
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L +LS G KP+ +Y T++ G+
Sbjct: 512 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGF 546
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+FTY +V LCK + + + +M I+ N+V Y +ID +C K
Sbjct: 212 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEANVVIYNTIIDGLCKYK 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +A L + + G KPD F YN+++
Sbjct: 271 HMDDAFDLFNKMETKGIKPDVFTYNSLI 298
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+FTYN L+ CLC + + M I PN+VT+ LID L
Sbjct: 285 KGIKPDVFTYNSLISCLCNYGRWSDASRLLSDM-IERKINPNVVTFNSLIDAFAKEGKLI 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + P+ YN+++ G+
Sbjct: 344 EAEKLFDEMIQRSIDPNIVTYNSLINGF 371
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T+N L+ K L D+M I PN+VTY LI+ C
Sbjct: 317 MIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM-IQRSIDPNIVTYNSLINGFCMHD 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA ++ + + PD YNT++KG+
Sbjct: 376 RLDEAQQIFTLMVSKDCLPDVVTYNTLIKGF 406
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+I+TYN +++ +CK + ++ + G+KPN++ YT +I C E
Sbjct: 496 KMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVIIYTTMISGFCRKGLKEE 554
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G PD YNT+++
Sbjct: 555 ADALFREMKEDGTLPDSGCYNTLIRA 580
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM +G KP+ VT+ LI + EA+
Sbjct: 148 EPDIVTLSSLLNGYCHGKRISEAVALVDQM-VEMGYKPDTVTFNTLIHGLFLHNKASEAV 206
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD F Y T++ G
Sbjct: 207 ALIDRMVARGCQPDLFTYGTVVNG 230
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+I TYN L+ C L M S P++VTY LI C K
Sbjct: 352 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM-VSKDCLPDVVTYNTLIKGFCKAK 410
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E M L +S G + YNT+++G
Sbjct: 411 RVEEGMELFREMSQRGLVGNTVTYNTLIQG 440
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ ++ YN ++ LCK + + ++ ++M GIKP++ TY LI +CN +
Sbjct: 251 KIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETK-GIKPDVFTYNSLISCLCNYGRWSD 309
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + P+ +N+++ +
Sbjct: 310 ASRLLSDMIERKINPNVVTFNSLIDAF 336
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSL------------------TTVYNFVDQ------- 35
++ K PD+ TYN L+K CK + + T YN + Q
Sbjct: 387 MVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 446
Query: 36 ---------MRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
S G+ P+++TY+IL+D +C L +A+ + L S +P+ + YN
Sbjct: 447 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNI 506
Query: 87 IMKG 90
+++G
Sbjct: 507 MIEG 510
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ L + +D+M A G +P+L TY +++ +C ++ A+
Sbjct: 184 PDTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALS 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + + +YNTI+ G
Sbjct: 243 LLKKMEKGKIEANVVIYNTIIDG 265
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + +QM+ +LGI N TY+IL++ C L A+
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILLNCFCRRSQLPLALA 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++PD ++++ GY
Sbjct: 138 VLGKMMKLGYEPDIVTLSSLLNGY 161
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ L D TYN L+ LC L +M AS G P+LVTY IL+D +C +L
Sbjct: 420 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS-GQIPDLVTYRILLDYLCKNHHL 478
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ A+ S D VYN + G
Sbjct: 479 AEAMVLLKAIEGSNLDADILVYNIAIDG 506
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T N L+ C R L ++ + ++ LG +P+ T+ LI +C + EA
Sbjct: 143 IPPDVYTLNILINSFCHLRRLGYAFSVLAKL-LKLGCQPDNTTFNTLIRGLCVEGKIGEA 201
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L GF+PD Y T+M G
Sbjct: 202 LHLFDKTIGEGFQPDVVTYGTLMNG 226
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I + PD+ TY L+ LCK + + + M +PN++ Y +ID++C +
Sbjct: 209 IGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSM-VQKNCRPNVIAYNTIIDSLCKDRQ 267
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L S + G PD F YN+++
Sbjct: 268 VTEAFNLFSEMITKGISPDIFTYNSLIHA 296
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ ++ +V LCK + ++ VD M G++P++VTYT L+D C
Sbjct: 313 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMM-IKRGVEPDVVTYTALMDGHCLRS 371
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + G P+ YN ++ GY
Sbjct: 372 EMDEAVKVFDTMVHKGCVPNVRSYNILINGY 402
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ YN ++ LCK R +T +N +M + GI P++ TY LI +CN
Sbjct: 243 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEM-ITKGISPDIFTYNSLIHALCNLC 301
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ L++ + +S P+ V++T++
Sbjct: 302 EWKHVTTLLNEMVNSKIMPNVVVFSTVV 329
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ TY L+ C + D M G PN+ +Y ILI+ C +
Sbjct: 348 MIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM-VHKGCVPNVRSYNILINGYCQIQ 406
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L+ +S G D YNT++ G
Sbjct: 407 RMDKAMGLLEQMSLQGLIADTVTYNTLIHG 436
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L++ LC + + D+ G +P++VTY L++ +C N A+R
Sbjct: 180 PDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE-GFQPDVVTYGTLMNGLCKVGNTSAAIR 238
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +P+ YNTI+
Sbjct: 239 LLRSMVQKNCRPNVIAYNTII 259
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + L+ + K + +TV + QM S GI P++ T ILI++ C+ + L A
Sbjct: 109 PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMD-SFGIPPDVYTLNILINSFCHLRRLGYAF 167
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ L G +PD +NT+++G
Sbjct: 168 SVLAKLLKLGCQPDNTTFNTLIRG 191
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ +YN L+ C+ + + ++QM G+ + VTY LI +C+
Sbjct: 383 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ-GLIADTVTYNTLIHGLCHVG 441
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L+ A+ L + SG PD Y ++
Sbjct: 442 RLQHAIALFHEMVASGQIPDLVTYRILL 469
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK L + + S + +++ Y I ID +C L A
Sbjct: 460 PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS-NLDADILVYNIAIDGMCRAGELEAARD 518
Query: 68 LVSALSDSGF 77
L S LS GF
Sbjct: 519 LFSNLSCQGF 528
>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
Length = 859
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ +V CL K L Y +M + G PNLVTY I+I +N
Sbjct: 467 LSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVEN-GCTPNLVTYNIMIALQAKARNYENV 525
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + +GF+PD Y+ +M+
Sbjct: 526 VKLYKDMQVAGFRPDKITYSIVME 549
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y ++ L + R T+ +D+M S+ KP +VTY +I LREA+++
Sbjct: 365 DGHSYTTMIGILGQARQFGTMRKLLDEMN-SVHCKPTVVTYNRIIHAYGRANYLREAVKV 423
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ +G++PD Y T++
Sbjct: 424 FEEMQKAGYEPDRVTYCTLI 443
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ + L ++M+ + G +P+ VTY LID L AM
Sbjct: 399 PTVVTYNRIIHAYGRANYLREAVKVFEEMQKA-GYEPDRVTYCTLIDIHAKGGYLEFAMD 457
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + + G PD F Y+ ++
Sbjct: 458 LYTRMQEVGLSPDTFTYSAMV 478
>gi|219885451|gb|ACL53100.1| unknown [Zea mays]
Length = 437
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + T++ +V CLCK +T +D M LG +P + TY L+ +C
Sbjct: 82 MVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAM-CGLGCEPTIRTYNSLVGGLCYVG 140
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L+ L DS PD + + ++ G+
Sbjct: 141 RLEEALELLKKLKDSPLTPDIYTFTIVLDGF 171
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN LV LC L + +++ S + P++ T+TI++D C EA
Sbjct: 124 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDS-PLTPDIYTFTIVLDGFCKVGRTEEATA 182
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G P F YN ++ G+
Sbjct: 183 IFHDAIGMGLSPTTFTYNALLNGH 206
>gi|219885281|gb|ACL53015.1| unknown [Zea mays]
gi|414866677|tpg|DAA45234.1| TPA: hypothetical protein ZEAMMB73_414823 [Zea mays]
Length = 559
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + T++ +V CLCK +T +D M LG +P + TY L+ +C
Sbjct: 204 MVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAM-CGLGCEPTIRTYNSLVGGLCYVG 262
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L+ L DS PD + + ++ G+
Sbjct: 263 RLEEALELLKKLKDSPLTPDIYTFTIVLDGF 293
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN LV LC L + +++ S + P++ T+TI++D C EA
Sbjct: 246 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDS-PLTPDIYTFTIVLDGFCKVGRTEEATA 304
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G P F YN ++ G+
Sbjct: 305 IFHDAIGMGLSPTTFTYNALLNGH 328
>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
Length = 762
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ +V CL K L Y +M + G PNLVTY I+I +N
Sbjct: 467 LSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVEN-GCTPNLVTYNIMIALQAKARNYENV 525
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + +GF+PD Y+ +M+
Sbjct: 526 VKLYKDMQVAGFRPDKITYSIVME 549
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y ++ L + R T+ +D+M S+ KP +VTY +I LREA+++
Sbjct: 365 DGHSYTTMIGILGQARQFGTMRKLLDEMN-SVHCKPTVVTYNRIIHAYGRANYLREAVKV 423
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ +G++PD Y T++
Sbjct: 424 FEEMQKAGYEPDRVTYCTLI 443
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ + L ++M+ + G +P+ VTY LID L AM
Sbjct: 399 PTVVTYNRIIHAYGRANYLREAVKVFEEMQKA-GYEPDRVTYCTLIDIHAKGGYLEVAMD 457
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + + G PD F Y+ ++
Sbjct: 458 LYTRMQEVGLSPDTFTYSAMV 478
>gi|341605761|gb|AEK82983.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + D GFKPD Y+ ++ G
Sbjct: 71 AIXLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSIFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSIFYSSLIDG 131
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY VK +C L YN V +M AS G +PN+V YT LI +A+R++
Sbjct: 421 YTYGTAVKGMCSSGDLDGAYNIVKEMGAS-GCRPNVVIYTTLIKTFLQKSRFGDAVRVLK 479
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G PD F YN+++ G
Sbjct: 480 EMREQGIAPDTFCYNSLIIG 499
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L ++ YN L+ C+ + +D+M G PN VTY +ID C +
Sbjct: 656 MVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGK-GFPPNAVTYCTIIDGYCKSG 714
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L EA +L + G PD FVY T++ G
Sbjct: 715 DLAEAFQLFDEMKLKGLVPDSFVYTTLVDG 744
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+F+Y L+ K ++ + D+M G+ N++ Y +L+ C + +
Sbjct: 624 KGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEM-VQAGLTSNVIIYNMLLGGFCRSGEIE 682
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ +S GF P+ Y TI+ GY
Sbjct: 683 KAKELLDEMSGKGFPPNAVTYCTIIDGY 710
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P +YN L+ LCK + L + + +M S+G+ + V Y+ILID + +N
Sbjct: 274 KGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMN-SVGLFADNVAYSILIDGLLKGRNAD 332
Query: 64 EAMRLVSALSDSGFKPDCFVYN 85
A LV + GF D +Y+
Sbjct: 333 AANGLVHEMVSHGFSIDPMMYD 354
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KPN VTY I+ID +C NL A L + + P Y +++ GY
Sbjct: 805 KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGY 853
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP+ TY ++ CK L + D+M+ G+ P+ YT L+D C ++
Sbjct: 694 KGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVE 752
Query: 64 EAMRL 68
A+ +
Sbjct: 753 RAITI 757
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK +L M+ + + P ++TYT L++ E
Sbjct: 806 PNDVTYNIMIDYLCKEGNLEAAKELFHHMQKA-NLMPTVITYTSLLNGYDKMGRRSEMFS 864
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G +PD +Y+ I+ +
Sbjct: 865 VFDEVIAAGIEPDNIMYSVIINAF 888
>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 608
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
LIF L P + TY LV L K + +++ + ++ + G+KP+ + Y +I+
Sbjct: 79 LIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEEN-GMKPDSILYNAMINA 137
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ N++EAM++ + D+G KP +NT++KGY
Sbjct: 138 FSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGY 173
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 36/119 (30%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTIL--------------- 52
P+ TYN LV+ C +++ +N + +M AS GI+P++VTY IL
Sbjct: 197 PNDRTYNILVRAWCSKKNIEEAWNVLHKMVAS-GIQPDVVTYNILARAYAQKGETLRAED 255
Query: 53 --------------------IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ C N+ EA+R V + + G P+ ++N+++KG+
Sbjct: 256 LILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGF 314
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T+N L+K + M +KPN TY IL+ C+ KN+ EA
Sbjct: 161 PTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + SG +PD YN + + Y
Sbjct: 221 VLHKMVASGIQPDVVTYNILARAY 244
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID---NVCNT 59
++++ P+ T +V CK ++ FV +M+ LG+ PNLV + LI ++ +T
Sbjct: 262 YEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMK-ELGVHPNLVIFNSLIKGFLDITDT 320
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+ L + + G KPD ++TIM +
Sbjct: 321 DGVDEALTL---MEEYGVKPDVITFSTIMNAW 349
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI ++ L K + + + M S G++PN+V T +I C+ + A
Sbjct: 370 IEPDIHAFSILAKGYVRAGETENAESVLTSMAKS-GVRPNVVICTTIISGWCSAGKMENA 428
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P+ + T++ GY
Sbjct: 429 KMVYEKMCEIGISPNLKTFETLIWGY 454
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +N L+K V + M G+KP+++T++ +++ + + +
Sbjct: 302 PNLVIFNSLIKGFLDITDTDGVDEALTLME-EYGVKPDVITFSTIMNAWSSAGLMDKCQE 360
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + ++ +G +PD ++ + KGY
Sbjct: 361 IFNDMAKAGIEPDIHAFSILAKGY 384
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ L+ C + + M S+G+KPN VTY LI+ C + +A+
Sbjct: 479 PDIITYSTLIDGYCLAGKMDEAMKLLSGM-VSVGLKPNTVTYRTLINGYCKISRMGDALV 537
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD YN I++G
Sbjct: 538 LFKEMESSGVSPDIITYNIILQG 560
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N ++ CK + D M +G+KP+++TY+ LID C + EAM+L+S +
Sbjct: 449 FNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGM 507
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G KP+ Y T++ GY
Sbjct: 508 VSVGLKPNTVTYRTLINGY 526
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ PD+ TY+ ++ LCK +++ + M + G+ PN TYT ++ C++
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKN-GVMPNCRTYTSIMHGYCSSG 280
Query: 61 NLREAMRLVSAL-SD----SGFKPDCFVYNTIMKGY 91
+EA+ + + SD G +PD Y T+++GY
Sbjct: 281 QPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGY 316
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 8 PDIFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
PD+ +Y ++ K ++ +T + +D+ I P++VTY+ +I +C + +
Sbjct: 194 PDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRR-----ISPDVVTYSSIIAALCKGQAMD 248
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+AM +++++ +G P+C Y +IM GY
Sbjct: 249 KAMEVLTSMVKNGVMPNCRTYTSIMHGY 276
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + YN L+ K + +MR G+ P+ VTY +I +C + + +AM
Sbjct: 339 PDHYVYNILICAYAKQGKVDEAMLVFSKMRQQ-GLNPDAVTYGAVIGILCKSGRVEDAML 397
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ D G P VYN+++ G
Sbjct: 398 YFEQMIDEGLSPGNIVYNSLIHG 420
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 512 LKPNTVTYRTLINGYCKISRMGDALVLFKEMESS-GVSPDIITYNIILQGLFQTRRTAAA 570
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 571 KELYVRITESGTQIELSTYNIILHG 595
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P YN L+ LC C + +M GI N + + +ID+ C
Sbjct: 402 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM-LDRGICLNTIFFNSIIDSHCKEG 460
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KPD Y+T++ GY
Sbjct: 461 RVIESEKLFDLMVRIGVKPDIITYSTLIDGY 491
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+ L+K LC + + + V + L P++ + TIL+ +C+ +EA+ L
Sbjct: 124 TFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHM 183
Query: 72 LSD---SGFKPDCFVYNTIMKGY 91
++D G PD Y T++ G+
Sbjct: 184 MADGRGGGSAPDVVSYTTVINGF 206
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TY L++ +L ++ +D M + GI P+ Y ILI + EA
Sbjct: 302 LEPDIATYCTLLQGYATKGALVGMHALLDLMVRN-GIHPDHYVYNILICAYAKQGKVDEA 360
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M + S + G PD Y ++
Sbjct: 361 MLVFSKMRQQGLNPDAVTYGAVI 383
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ LCK + + +QM G+ P + Y LI +C A
Sbjct: 372 LNPDAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWERA 430
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G + +N+I+ +
Sbjct: 431 EELILEMLDRGICLNTIFFNSIIDSH 456
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + TY L+ C C+ L + + + G + +T+T L+ +C K +
Sbjct: 82 KVTPTVHTYAILIGCCCRADRLDLGFAALGNV-VKKGFRVEAITFTPLLKGLCADKRTSD 140
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ PD F ++KG
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKG 167
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++FK++ PDI TYN +++ L + R ++ S G + L TY I++
Sbjct: 537 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITES-GTQIELSTYNIILHG 595
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+C K +A+R+ L K + +N ++
Sbjct: 596 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMI 628
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+ P++ TY L+ CK L V+ M A G+ N V Y LI +C
Sbjct: 403 MVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAK-GLSLNTVGYNCLICALCKDG 461
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ EA++L +S G KPD + +N+++ G
Sbjct: 462 NIEEALQLFGEMSGKGCKPDIYTFNSLING 491
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P D TYN L+K LCK ++ ++M GI P +++ ILI +C T
Sbjct: 543 MLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGK-GIFPTIISCNILISGLCRTG 601
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A++ + + G PD YN+++ G
Sbjct: 602 KVNDALKFLQDMIHRGLTPDIVTYNSLING 631
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P I + N L+ LC+ + F+ M G+ P++VTY LI+ +C
Sbjct: 578 MLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM-IHRGLTPDIVTYNSLINGLCKMG 636
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+++EA L + L G +PD YNT++
Sbjct: 637 HVQEASNLFNKLQSEGIRPDAITYNTLI 664
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI TYN L+ LCK + N +++++ GI+P+ +TY LI C+
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSE-GIRPDAITYNTLISRHCHEG 671
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ DSGF P+ ++ ++
Sbjct: 672 MFNDACLLLYKGVDSGFIPNEVTWSILI 699
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD +T+N ++ L K L + +++M A +PN++TYTILI+ C
Sbjct: 368 MVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKR-FEPNVITYTILINGFCKQG 426
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA +V+++S G + YN ++
Sbjct: 427 RLEEAAEIVNSMSAKGLSLNTVGYNCLI 454
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N ++ LC+ + +D+M G + +TY L+ +C + EA
Sbjct: 273 PDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLR-GFSTDALTYGYLMHGLCRMGQVDEARA 331
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + P+ +YNT++ GY
Sbjct: 332 LLNKIPN----PNTVLYNTLISGY 351
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P ++T+ ++K LC + + + + M A G PN V Y LI +C
Sbjct: 196 MLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDM-AKHGCVPNSVIYQTLIHALCENN 254
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L+ + +PD +N ++ G
Sbjct: 255 RVSEALQLLEDMFLMCCEPDVQTFNDVIHG 284
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI+T+N L+ LCK + + M G+ N VTY L+ +++
Sbjct: 476 KGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLE-GVIANTVTYNTLVHAFLMRDSIQ 534
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +LV + G D YN ++K
Sbjct: 535 QAFKLVDEMLFRGCPLDNITYNGLIKA 561
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + YN L+ LCK ++ +M G KP++ T+ LI+ +C +
Sbjct: 441 KGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGK-GCKPDIYTFNSLINGLCKNHKME 499
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + G + YNT++ +
Sbjct: 500 EALSLYHDMFLEGVIANTVTYNTLVHAF 527
>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
Length = 807
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTY+ L+ LC+ + L+ + + +R PN+V+Y LID + +A +
Sbjct: 325 PDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQ 384
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +G PD Y+T+++G
Sbjct: 385 LFLEMVTAGQHPDVVTYSTLIRG 407
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P + Y+ ++ LC+ L D M A+ G +PNL Y LI +C T
Sbjct: 424 MVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVAN-GCQPNLAVYNSLIYGLCKTG 482
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A V +++ G PD Y T++ G
Sbjct: 483 RLCDAKLRVKEMTERGCSPDGVTYGTLIVG 512
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ +++P P + Y ++ CK + Y+ ++ M+ G + + +TY LI C +
Sbjct: 248 VLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRK-GYQGDNLTYNTLIHGHCRLQ 306
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L+ + + F PD F Y+ ++ G
Sbjct: 307 EIDRAYELLEEMKSNDFVPDIFTYDILIAG 336
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN L+ K + Y +M + G P++VTY+ LI +CN EA
Sbjct: 361 PNVVSYNTLIDGFSKAARVNDAYQLFLEM-VTAGQHPDVVTYSTLIRGLCNAGRASEAHS 419
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + P VY++++ G
Sbjct: 420 YLEEMVGKKILPKVPVYSSVISG 442
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PD TY L++ LC L + ++M G++P ++T L++ +C + NL
Sbjct: 119 QELIPDSITYGILIRGLCNFGKLKLACSLYEEM-VDRGLRPVVLTCKFLLNALCKSGNLE 177
Query: 64 EAMRLVSALS 73
A+R +S
Sbjct: 178 LALRYFEKMS 187
Score = 37.7 bits (86), Expect = 0.94, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TY ++ L K + + +M P L YT +I C ++ +A
Sbjct: 224 PNNWTYTVVINGLVKAGKVAEAERVLQEMPV-----PTLANYTSVIGGHCKAGDMGKAYH 278
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G++ D YNT++ G+
Sbjct: 279 LLEDMKRKGYQGDNLTYNTLIHGH 302
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P F Y +++ LCK +L ++ M + GIKP+ T L+ +C AM
Sbjct: 568 PTAFFYATVIESLCKENNLAEARQLLEDMIGA-GIKPDGSTVDALVGAMCRQDKAVVAMA 626
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G KP Y+T++
Sbjct: 627 FLEEMVRLGSKPSVGTYSTLL 647
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P + T FL+ LCK +L + ++M + P T+TILID +
Sbjct: 151 MVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSI----PCAATWTILIDGLFRAI 206
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA + + P+ + Y ++ G
Sbjct: 207 RVDEACYYFEEMKHTAI-PNNWTYTVVING 235
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P+ + +V LCK + ++ VD M S G++P++VTYT LID C
Sbjct: 275 MVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQS-GVEPDVVTYTALIDGHCLRS 333
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + G P+ F YNT++ GY
Sbjct: 334 EMDEAVKVFDMMVHKGCAPNVFSYNTLINGY 364
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK L + + S + P++ YTI+ID +C L +A
Sbjct: 422 PDLVTYRILLDYLCKNCHLDKAMALLKAIEGS-NLDPDIQIYTIVIDGMCRAGELEDARD 480
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S LS G KP+ + YN + G
Sbjct: 481 LFSNLSSKGLKPNVWTYNIMTHG 503
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L P+ TYN L+ LC L +M A G P+LVTY IL+D +C +L
Sbjct: 383 QKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVAC-GQIPDLVTYRILLDYLCKNCHLD 441
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L+ A+ S PD +Y ++ G
Sbjct: 442 KAMALLKAIEGSNLDPDIQIYTIVIDG 468
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI Y ++ +C+ L + + +S G+KPN+ TY I+ +C L EA
Sbjct: 455 LDPDIQIYTIVIDGMCRAGELEDARDLFSNL-SSKGLKPNVWTYNIMTHGLCKRGLLDEA 513
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + ++ D YNTI +G+
Sbjct: 514 TKLFMEMDENACSADGCTYNTITQGF 539
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++ L+K LC + + D+M G +P++V Y LI+ +C T + A+R
Sbjct: 142 PDTASFTTLIKGLCLEGQIGEALHLFDKMIWE-GFQPDVVIYATLINGLCKTGHTSAAIR 200
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ ++ +PD VY T++
Sbjct: 201 LLRSMEKGNCQPDVVVYGTLIH 222
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P +++T N L+ C + ++ + ++ LG +P+ ++T LI +C + EA
Sbjct: 105 IPHNVYTLNVLINSFCHLNRVNFAFSVLAKI-LKLGCQPDTASFTTLIKGLCLEGQIGEA 163
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+PD +Y T++ G
Sbjct: 164 LHLFDKMIWEGFQPDVVIYATLING 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y L+ LCK R T +N +M + GI PN+VT L+ +CN +
Sbjct: 212 PDVVVYGTLIHSLCKDRQQTQAFNLFSEM-ITKGISPNIVTCNSLVYALCNLGEWKHVNT 270
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + DS P+ T++
Sbjct: 271 LLNEMVDSKIMPNAISLTTVVDA 293
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSL-TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ K P++F+YN L+ CK + +Y F + R L PN VTY LI +C+
Sbjct: 345 MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKL--IPNTVTYNTLIHGLCHV 402
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIM 88
L++A+ L + G PD Y ++
Sbjct: 403 GRLQDAIALFREMVACGQIPDLVTYRILL 431
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I++ PD+ Y L+ LCK + + M +P++V Y LI ++C +
Sbjct: 170 MIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKG-NCQPDVVVYGTLIHSLCKDR 228
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A L S + G P+ N+++
Sbjct: 229 QQTQAFNLFSEMITKGISPNIVTCNSLV 256
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I + ++ + K + +TV + +M S GI N+ T +LI++ C+ + A
Sbjct: 71 PPSIVDFAKILTSITKVKRYSTVLSLSRKMD-SFGIPHNVYTLNVLINSFCHLNRVNFAF 129
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G +PD + T++KG
Sbjct: 130 SVLAKILKLGCQPDTASFTTLIKG 153
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI+T+N L+K C L ++MR G+KP++VTY +I +C + +A
Sbjct: 392 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH-GVKPHVVTYMTVIAALCRIGKMDDA 450
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + D G PD + Y+ +++G+
Sbjct: 451 MEKFNQMIDQGVVPDKYAYHCLIQGF 476
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +PPD+ TY+ +V LCK R++ F+ QM + G+ P+ TY LI +T
Sbjct: 247 MVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM-VNKGVLPDNWTYNNLIYGYSSTG 305
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+R+ + PD NT+M
Sbjct: 306 QWKEAVRVFKEMRRQSILPDVVALNTLM 333
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD YN L+ C + D M S GI+PN+V Y L++ C + E
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAM-VSAGIEPNVVGYGTLVNGYCKIGRIDEG 590
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G KP +YN I+ G
Sbjct: 591 LSLFREMLQKGIKPSTILYNIIIDG 615
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI + ++ LCK + N D + ++G+ P+ V Y +L+D C + +A+R+
Sbjct: 500 DIVFFGSIINNLCKLGRVMDAQNIFD-LTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 558
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
A+ +G +P+ Y T++ GY
Sbjct: 559 FDAMVSAGIEPNVVGYGTLVNGY 581
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD + Y+ L++ C SL + ++ + G++ ++V + +I+N+C
Sbjct: 457 MIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN-GMRLDIVFFGSIINNLCKLG 515
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + G PD VYN +M GY
Sbjct: 516 RVMDAQNIFDLTVNVGLHPDAVVYNMLMDGY 546
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN ++ K + + +M GI P+LVTY+ ++ +C + + +A
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDLVTYSSVVHALCKARAMDKAEA 277
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G PD + YN ++ GY
Sbjct: 278 FLRQMVNKGVLPDNWTYNNLIYGY 301
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L D + L+K C+ + + + LG P++ +Y IL+ ++CN
Sbjct: 139 LLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQG 198
Query: 61 NLREAMRLVSALSDSGF--KPDCFVYNTIMKGY 91
+A L+ +++ G PD YNT++ G+
Sbjct: 199 KSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGF 231
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ N L+ LCK + + D M A G P++ +YTI+++
Sbjct: 313 VFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTM-AMKGQNPDVFSYTIMLNGY 371
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + L + G PD + +N ++K Y
Sbjct: 372 ATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 406
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K PD+F+Y ++ L + + D M GI P++ T+ +LI N
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDIYTFNVLIKAYANCG 410
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +AM + + + D G KP Y T++
Sbjct: 411 MLDKAMIIFNEMRDHGVKPHVVTYMTVI 438
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 IFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK+L DI T N ++ + + R + + + S G+ P VTY+I+I N+
Sbjct: 663 LFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRS-GLVPCAVTYSIMITNL 721
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EA + S++ ++G +PD + N +++
Sbjct: 722 LKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVR 754
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD +Y ++ C L N DQM GI+PNLVT LI C +
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK-GIRPNLVTCNTLIKGYCRSG 621
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +A +S + +G PD F YNT++ GY
Sbjct: 622 DMPKAYEYLSKMISNGIIPDSFSYNTLIDGY 652
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N +V LCK R V F+ M G+ ++VTY LI+ C + EA +L
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGK-GVFADIVTYNTLINAYCREGLVEEAFQL 314
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ S G +P YN I+ G
Sbjct: 315 LNSFSSRGMEPGLLTYNAILYG 336
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN + LCK + ++M G+ P+ T+T LI C N+ +A+ L
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEM-VERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
A+ + KPD YNT++ G+
Sbjct: 525 FEAMVRTNLKPDKVTYNTLIDGF 547
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD F+YN L+ K +L + +++M G++ N++TY ++++ C
Sbjct: 633 MISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR-GLQFNIITYNLILNGFCAEG 691
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + + G PD Y++++ G+
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLINGH 722
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD +T+ L++ CK ++ N + M +KP+ VTY LID C
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM-VRTNLKPDKVTYNTLIDGFCKAG 551
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A L + PD Y T++ G+
Sbjct: 552 EMGRAKELWDDMIRKDIIPDHISYGTVLNGF 582
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + TYN ++ LCK + + +M LG+ PN TY L+ +C N+
Sbjct: 321 RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM-LQLGLTPNAATYNTLLVEICRRDNIL 379
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA + +S G PD +++++
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSLI 404
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +++ L+ L + L +M S GI P+ V YTILID C L +A++
Sbjct: 395 PDLVSFSSLIGVLARNGHLYQALMHFREMERS-GIVPDNVIYTILIDGFCRNGALSDALK 453
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G D YNT + G
Sbjct: 454 MRDEMLARGCFMDVVTYNTFLNG 476
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ +C+ ++ D+M + G+ P+LV+++ LI + +L +A
Sbjct: 358 LTPNAATYNTLLVEICRRDNILEAQEIFDEM-SRRGVLPDLVSFSSLIGVLARNGHLYQA 416
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + SG PD +Y ++ G+
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGF 442
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L +I TYN ++ C + + +M +GI P+ TY+ LI+ + N++
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKM-IEIGINPDGATYSSLINGHVSQDNMK 729
Query: 64 EAMRLVSALSDSGFKPD 80
EA R + G PD
Sbjct: 730 EAFRFHDEMLQRGLVPD 746
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + DI TYN L+ C+ + + ++ +S G++P L+TY ++ +C
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSF-SSRGMEPGLLTYNAILYGLCKIGKYD 344
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A ++ + G P+ YNT++
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLL 369
>gi|449467965|ref|XP_004151692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
gi|449468117|ref|XP_004151768.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
gi|449532400|ref|XP_004173169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
Length = 456
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L P T+N ++ LCK + ++ G P LVTY ILI+ +C
Sbjct: 138 IILKDLSPHPVTFNTMINGLCKHGYTSNAIMLFRNLQRH-GFIPQLVTYNILINGLCKVD 196
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
LR A+R+++ DSG +P+ Y T+MK
Sbjct: 197 RLRAAIRMLNEAMDSGLEPNAVTYTTLMK 225
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C+ + Y+ + +MR + GI P+++TY LI +L +++
Sbjct: 40 PDVVTYNTLIDGYCRFSGMDAAYSVLYRMREA-GISPDVITYNSLIAGATRNFSLEQSLD 98
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + SG PD + YNT+M
Sbjct: 99 LFEEMLQSGITPDIWSYNTLMH 120
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ LCK L +++ S G++PN VTYT L+ + ++
Sbjct: 180 PQLVTYNILINGLCKVDRLRAAIRMLNEAMDS-GLEPNAVTYTTLMKSCFRSRQYERGFE 238
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ S + + G+ D F Y T+ +
Sbjct: 239 IFSKMKNKGYAFDGFAYCTVSGAF 262
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 14 NFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
N V CK + + +D +R +G+ P++VTY LID C + A ++ +
Sbjct: 11 NICVASFCKSQQMQKAEAVIIDGIR--IGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRM 68
Query: 73 SDSGFKPDCFVYNTIMKG 90
++G PD YN+++ G
Sbjct: 69 REAGISPDVITYNSLIAG 86
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PDI++YN L+ C Y F D + L P+ VT+ +I+ +C
Sbjct: 108 ITPDIWSYNTLMHCFFILGKPDEAYRVFKDIILKDL--SPHPVTFNTMINGLCKHGYTSN 165
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L L GF P YN ++ G
Sbjct: 166 AIMLFRNLQRHGFIPQLVTYNILING 191
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + DI YN + CK L Y D++ G++ ++ T++I+ + +C
Sbjct: 278 MIKNDVGIDITFYNTFINLYCKEGKLEAAYKLFDEIEPR-GLECDVYTHSIITNGLCRVG 336
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N+ AM+ ++ + +GF + N ++
Sbjct: 337 NIEGAMQHLNCVYTTGFASNLVALNCLI 364
>gi|255660976|gb|ACU25657.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 376
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ CK + YN V ++ G+ P ++TY++L++ +C + A++
Sbjct: 197 PTIITYNTLINGFCKNKMFGEAYNLVKELLDK-GLDPGVITYSMLMEGLCLDHKVARALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N +++G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIRG 278
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSRTYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ +N L++ LC + + M PNLV++ L++ ++R
Sbjct: 263 KGFKPDVQMHNILIRGLCSVGKMQLALSLYFDMNL-WKCAPNLVSHNTLMEGFYKDGDIR 321
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + + +G +PD YN ++G
Sbjct: 322 NALVIWARILRNGLEPDIISYNITLEG 348
>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LC R L +DQ+ P ++TYTILI+ + EAM+
Sbjct: 170 PDIVTYNIMIGSLCNRRKLGLALKVLDQLLLD-NCMPTVITYTILIEATIVEGGINEAMK 228
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G PD + YN I++G
Sbjct: 229 LLEEMLARGLLPDMYTYNAIIRG 251
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD++TYN +++ +CK V +M S G +PN VTY+ILI ++C
Sbjct: 233 MLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEM-FSRGCEPNKVTYSILISSLCRFG 291
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ ++ + + PD + Y+ ++
Sbjct: 292 RIDEAISVLKVMIEKELTPDTYSYDPLISA 321
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L PD ++Y+ L+ LCK L +D M S G P++V Y ++ +C
Sbjct: 303 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM-ISNGCLPDIVNYNTILAALCKNG 361
Query: 61 NLREAMRLVSALSDSGFKPD 80
N +A+ + + L G P+
Sbjct: 362 NANQALEIFNKLRGMGCPPN 381
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 7 PPDIFTYNF----LVKCL---CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
P + +Y+F L+K L CK F++ + + G P+++ T LI N
Sbjct: 58 PAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECL-VNKGYTPDVILCTKLIKGFFNF 116
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KN+ +A R++ L +S +PD F YN ++ G+
Sbjct: 117 KNIEKASRVMEIL-ESHTEPDVFAYNAVISGF 147
>gi|413926925|gb|AFW66857.1| hypothetical protein ZEAMMB73_570381 [Zea mays]
Length = 487
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK ++T + MR S G+ P++ T ILID +C L+
Sbjct: 259 PNNITYNSIISALCKAGNMTEAFKLEQNMRQS-GLVPDIYTSNILIDGLCREGKLKMVDN 317
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD YNTI+ Y
Sbjct: 318 LLLDMCSNGLTPDTVTYNTIINAY 341
Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI+T N L+ LC+ L V N + M S G+ P+ VTY +I+ C +++ A
Sbjct: 292 LVPDIYTSNILIDGLCREGKLKMVDNLLLDM-CSNGLTPDTVTYNTIINAYCRAQDMNSA 350
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ + +G +PD F YN M
Sbjct: 351 MNFMNKMLVAGCEPDIFTYNIWM 373
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + + + NF+++M + G +P++ TY I + ++ L +A
Sbjct: 327 LTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVA-GCEPDIFTYNIWMHSLYRNHMLNQA 385
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L+ L P+ YNT+M G
Sbjct: 386 GKLLDELVAVDCSPNSVTYNTLMDG 410
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN + L + L +D++ A + PN VTY L+D +C + L AM
Sbjct: 364 PDIFTYNIWMHSLYRNHMLNQAGKLLDELVA-VDCSPNSVTYNTLMDGIC-SDVLDRAMI 421
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L FKP+ N + +
Sbjct: 422 LTGRLIKMAFKPNTITLNVFLSHF 445
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
S GI PN +TY +I +C N+ EA +L + SG PD + N ++ G
Sbjct: 254 SRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDIYTSNILIDG 305
>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
Length = 500
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ YN +V LC+ + F+D+ G P +VTYT LI C K ++
Sbjct: 112 RRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMK 171
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM + +A+ + +P Y+ I+ G
Sbjct: 172 LAMTIWNAMLERKIQPTIVSYSVIIDG 198
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L++ CK R + + +M S +P+ Y +LID C + A+
Sbjct: 44 PDVVTFTALIRGFCKNRMVERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALE 103
Query: 68 LVSALS-DSGFKPDCFVYNTIMKG 90
L+ + + +PD +YN+I+ G
Sbjct: 104 LLREMRVERRIQPDVVIYNSIVDG 127
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P I +Y+ ++ L K + Y V +M +LG + N+V YT LID +C +
Sbjct: 180 MLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREME-TLGCELNVVIYTTLIDGLCKSG 238
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L +A L + SG P+ Y T++ +
Sbjct: 239 FLDDAYALYRIMKRSGAFPNQRTYATLIDTF 269
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F Y L+ CK + + +MR I+P++V Y ++D +C + EA +
Sbjct: 80 PDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWK 139
Query: 68 LV-SALSDSGFKPDCFVYNTIMKG 90
+ + G P Y ++++G
Sbjct: 140 FLDETMVRQGCSPTVVTYTSLIRG 163
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ + L+ L K L ++ M GI P++VT+T LI C + + A
Sbjct: 8 PPNQHAFASLIDALSKSNRLGDAARALELM-CDAGIHPDVVTFTALIRGFCKNRMVERAW 66
Query: 67 RLVSALSDSG-FKPDCFVYNTIMKGY 91
+ + S +PDCF+Y ++ GY
Sbjct: 67 EIFQEMIKSNRCQPDCFLYGVLIDGY 92
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLT---TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
P + TY L++ CK + + T++N + + + I+P +V+Y+++ID + + +
Sbjct: 152 PTVVTYTSLIRGACKAKKMKLAMTIWNAMLERK----IQPTIVSYSVIIDGLSKAGRVYD 207
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A R+V + G + + +Y T++ G
Sbjct: 208 AYRVVREMETLGCELNVVIYTTLIDG 233
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN ++ C + Y +MR GI P+ TY+ LID + + +R A L
Sbjct: 363 NLLTYNTVIAGCCLESGMVLFY----EMRQR-GIAPDFATYSALIDRLLGSGEIRRAFDL 417
Query: 69 VSALSDSGFKP 79
+ SG P
Sbjct: 418 CEEMLASGLSP 428
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ C+ T D +R + ++ YT ++ +C + L +A
Sbjct: 257 PNQRTYATLIDTFCRNDRTETALGLFDHIRDYCPL--DVAMYTAVVSGLCRERRLDDARA 314
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +G D YN ++ G
Sbjct: 315 LFREMRLAGVSADTHAYNVLLHG 337
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ Y L+ LCK L Y M+ S G PN TY LID C A+ L
Sbjct: 223 NVVIYTTLIDGLCKSGFLDDAYALYRIMKRS-GAFPNQRTYATLIDTFCRNDRTETALGL 281
Query: 69 VSALSDSGFKP-DCFVYNTIMKG 90
+ D + P D +Y ++ G
Sbjct: 282 FDHIRD--YCPLDVAMYTAVVSG 302
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD +Y ++ C L N DQM GI+PNLVT LI C +
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK-GIRPNLVTCNTLIKGYCRSG 621
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +A +S + +G PD F YNT++ GY
Sbjct: 622 DMPKAYEYLSKMISNGIIPDSFSYNTLIDGY 652
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N +V LCK R V F+ M G+ ++VTY LI+ C + EA +L
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGK-GVFADIVTYNTLINAYCREGLVEEAFQL 314
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ S G +P YN I+ G
Sbjct: 315 LNSFSSRGMEPGLLTYNAILYG 336
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN + LCK + ++M G+ P+ T+T LI C N+ +A+ L
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEM-VERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
A+ + KPD YNT++ G+
Sbjct: 525 FEAMVRTNLKPDKVTYNTLIDGF 547
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD F+YN L+ K +L + +++M G++ N++TY ++++ C
Sbjct: 633 MISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR-GLQFNIITYNLILNGFCAEG 691
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + + G PD Y++++ G+
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLINGH 722
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD +T+ L++ CK ++ N + M +KP+ VTY LID C
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM-VRTNLKPDKVTYNTLIDGFCKAG 551
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A L + PD Y T++ G+
Sbjct: 552 EMGRAKELWDDMIRKDIIPDHISYGTVLNGF 582
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + TYN ++ LCK + + +M LG+ PN TY L+ +C N+
Sbjct: 321 RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM-LQLGLTPNAATYNTLLVEICRRDNIL 379
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA + +S G PD +++++
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSLI 404
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +++ L+ L + L +M S GI P+ V YTILID C L +A++
Sbjct: 395 PDLVSFSSLIGVLARNGHLYQALMHFREMERS-GIVPDNVIYTILIDGFCRNGALSDALK 453
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G D YNT + G
Sbjct: 454 MRDEMLARGCFMDVVTYNTFLNG 476
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ +C+ ++ D+M + G+ P+LV+++ LI + +L +A
Sbjct: 358 LTPNAATYNTLLVEICRRDNILEAQEIFDEM-SRRGVLPDLVSFSSLIGVLARNGHLYQA 416
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + SG PD +Y ++ G+
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGF 442
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L +I TYN ++ C + + +M +GI P+ TY+ LI+ + N++
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKM-IEIGINPDGATYSSLINGHVSQDNMK 729
Query: 64 EAMRLVSALSDSGFKPD 80
EA R + G PD
Sbjct: 730 EAFRFHDEMLQRGLVPD 746
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + DI TYN L+ C+ + + ++ +S G++P L+TY ++ +C
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSF-SSRGMEPGLLTYNAILYGLCKIGKYD 344
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A ++ + G P+ YNT++
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLL 369
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +L P + TYN L+ CK + Y +D ++ + G+ P+ TY++ ID +C +K
Sbjct: 450 MLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKEN-GLVPDQWTYSVFIDTLCKSK 508
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L ++L + G K + +Y ++ G+
Sbjct: 509 RMEEACDLFNSLKEKGIKANEVMYTALIDGH 539
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ +CK + + V+ M + +G+KP + TYTILI+ + + A R
Sbjct: 562 PNSSTYNSLIYGVCKEGKVQEGLSMVENM-SKMGVKPTVATYTILIEEMLREGDFDHANR 620
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G KPD + Y + Y
Sbjct: 621 VFNQMVSFGHKPDVYTYTAFIHTY 644
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY+ + LCK + + + + ++ GIK N V YT LID C + EA
Sbjct: 490 LVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEK-GIKANEVMYTALIDGHCKAGKIDEA 548
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + P+ YN+++ G
Sbjct: 549 ISLLERMHSEDCLPNSSTYNSLIYG 573
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY ++ L + ++MR +PN+ TYT+++D +C + L E+ R
Sbjct: 317 PTVRTYTVIIHALFGNDRNLEGMDLFNEMRER-SCEPNVHTYTVMVDAMCKERKLDESRR 375
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + G P YN +++GY
Sbjct: 376 ILNEMMEKGLVPSVVTYNALIRGY 399
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + + +QM S G KP++ TYT I C + N++EA
Sbjct: 597 PTVATYTILIEEMLREGDFDHANRVFNQM-VSFGHKPDVYTYTAFIHTYCTSGNVKEAEG 655
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + ++G PD Y ++ Y
Sbjct: 656 MMARMIEAGVMPDSLTYTLLISAY 679
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY +V +CK R L +++M G+ P++VTY LI C + A+
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEK-GLVPSVVTYNALIRGYCEEGRIEAALE 410
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +P+ YN ++ G+
Sbjct: 411 ILGLMESNNCRPNERTYNELICGF 434
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P + TYN L++ C+ + + M ++ +PN TY LI K
Sbjct: 380 MMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESN-NCRPNERTYNELICGFSKRK 438
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++ +AM L+S + +S P YN+++
Sbjct: 439 HVHKAMTLLSKMLESKLTPSLVTYNSLIH 467
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ C+ + + Y + M + G + N V+YT +I +C + E
Sbjct: 245 LSPDSFTYTSLILGYCRNNDVNSAYKVFNMM-PNKGCRRNEVSYTTIIHGLCEAGRIDEG 303
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + + P Y I+
Sbjct: 304 ISLFKKMREDDCYPTVRTYTVIIHA 328
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I+T N +V K ++ +V ++ + G+ P+ TYT LI C ++ A +
Sbjct: 212 PNIYTLNTMVNAYSKMGNIVEANLYVSKIFQA-GLSPDSFTYTSLILGYCRNNDVNSAYK 270
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + + G + + Y TI+ G
Sbjct: 271 VFNMMPNKGCRRNEVSYTTIIHG 293
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ +YN L+ L + + + +M + I PN+ T +++ N+ EA V
Sbjct: 179 VRSYNELLMMLARFLMIDEMKRVYTEMLNDM-IVPNIYTLNTMVNAYSKMGNIVEANLYV 237
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
S + +G PD F Y +++ GY
Sbjct: 238 SKIFQAGLSPDSFTYTSLILGY 259
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L++ +CK +D+MRA G PN+VTY ++I+ +C + +A
Sbjct: 175 PNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAK-GCTPNIVTYNVIINGMCREGRVDDARD 233
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ L G +PD Y T++KG
Sbjct: 234 LLNRLFSYGCQPDTVSYTTLLKG 256
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY L++ LC + + +D M G +PN+VTYT+L++ +C +AM
Sbjct: 140 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRR-GCQPNVVTYTVLLEAMCKNSGFEQAMA 198
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G P+ YN I+ G
Sbjct: 199 VLDEMRAKGCTPNIVTYNVIING 221
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PP++ T+N LV C+ L V+QM G PNL+TY L D +
Sbjct: 480 MLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEH-GCTPNLITYNTLFDGITKDC 538
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +A+ L+ L G PD +++I+
Sbjct: 539 SSEDALELLHGLVSKGVSPDVITFSSII 566
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F+ +P P+ TY L+ LC L V +M PN+VT+ +L++ C
Sbjct: 444 LFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEM-LHRDCPPNVVTFNVLVNFFCQK 502
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA+ LV + + G P+ YNT+ G
Sbjct: 503 GFLDEAIELVEQMMEHGCTPNLITYNTLFDG 533
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR---ASLGIKPNLVTYTILIDNVCNTKNLR 63
P D+F YN LV C+ Y +D R S+ + P+ TYT LI +C+ +
Sbjct: 107 PVDVFAYNTLVAGYCR-------YGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVA 159
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ + G +P+ Y +++
Sbjct: 160 DALSLLDDMLRRGCQPNVVTYTVLLEA 186
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+I TYN ++ +C+ + + ++++ S G +P+ V+YT L+ +C +K
Sbjct: 206 KGCTPNIVTYNVIINGMCREGRVDDARDLLNRL-FSYGCQPDTVSYTTLLKGLCASKRWD 264
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+ L + + + P+ ++ +++
Sbjct: 265 DVEELFAEMMEKNCMPNEVTFDMLIR 290
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G P++ T LI N+C +A R++ A SG D F YNT++ GY
Sbjct: 70 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGY 120
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P YN ++ LCK + +F+ M S G PN TY ILI+ + L+EA
Sbjct: 592 PKALVYNKILLGLCKRHEIDNAIDFLAYM-VSNGCMPNESTYIILIEGLAREGLLKEAQD 650
Query: 68 LVSALSDSG 76
L+S L G
Sbjct: 651 LLSMLCSRG 659
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PP+ T+N + LC+ + ++QM+ G +VTY L++ C
Sbjct: 378 MVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEH-GCTVGVVTYNALVNGFCVQG 436
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A+ L ++ KP+ Y T++ G
Sbjct: 437 HIDSALELFRSMP---CKPNTITYTTLLTG 463
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ T++ L++ C+ + + QM N I+I+++C +
Sbjct: 276 KNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEH-ECATNTTLCNIVINSICKQGRVD 334
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + ++ + G PD Y T++KG
Sbjct: 335 DAFKFLNNMGSYGCNPDTISYTTVLKG 361
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N ++ +CK + + F++ M S G P+ ++YT ++ +C + +A L+ +
Sbjct: 321 NIVINSICKQGRVDDAFKFLNNM-GSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMV 379
Query: 74 DSGFKPDCFVYNTIM 88
+ P+ +NT +
Sbjct: 380 RNNCPPNEVTFNTFI 394
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y ++K LC+ + +M + PN VT+ I +C + +A+
Sbjct: 350 PDTISYTTVLKGLCRAERWNDAKELLKEMVRN-NCPPNEVTFNTFICILCQKGLIEQAIM 408
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G YN ++ G+
Sbjct: 409 LIEQMQEHGCTVGVVTYNALVNGF 432
>gi|341605781|gb|AEK82993.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
gi|341605783|gb|AEK82994.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L+ + D GFKPD Y+ ++ G
Sbjct: 71 AIXLLHRMIDEGFKPDVVTYSVVVNG 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 78 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 131
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN +V CLCK L ++QM G P++ T+ LI +C L EA+
Sbjct: 227 PDVFTYNIVVNCLCKNGQLEEAKGILNQM-VDRGCLPDITTFNTLIAALCTGNRLEEALD 285
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ G PD + +N ++
Sbjct: 286 LARQVTVKGVSPDVYTFNILI 306
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD++T+N L+ LCK ++M+ S G P+ VTY LIDN+C+ L
Sbjct: 293 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS-GCTPDEVTYNTLIDNLCSLGKLG 351
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ + +G YNTI+ G
Sbjct: 352 KALDLLKDMESTGCPRSTITYNTIIDG 378
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN ++ LCK + DQM GI N +T+ LID +C K + +A
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKKIDDAF 424
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L++ + G +P+ YN+I+ Y
Sbjct: 425 ELINQMISEGLQPNNITYNSILTHY 449
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 1 LIFKQLPP------DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
LI QL P D YN L+ L + + + + +M A GIKP++VT+ L+
Sbjct: 39 LILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGAR-GIKPDVVTFNTLMK 97
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C +R A+ ++ +S G PD + T+M+G+
Sbjct: 98 ALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 134
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + + T+N L+ LCK + + + ++QM S G++PN +TY ++ + C ++
Sbjct: 397 LQGISRNAITFNTLIDGLCKDKKIDDAFELINQM-ISEGLQPNNITYNSILTHYCKQGDI 455
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
++A ++ ++ +GF+ D Y T++ G
Sbjct: 456 KKAADILETMTANGFEVDVVTYGTLING 483
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ T+N L+K LC+ + T +++M +S G+ P+ T+T L+ ++
Sbjct: 83 RGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM-SSRGVAPDETTFTTLMQGFVEEGSIE 141
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+R+ + + + G N ++ GY
Sbjct: 142 AALRVKARMLEMGCSATKVTVNVLINGY 169
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I PD TYN V LC+ + +D M G P++ TY I+++ +C
Sbjct: 186 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQ 244
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA +++ + D G PD +NT++
Sbjct: 245 LEEAKGILNQMVDRGCLPDITTFNTLI 271
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N L+ CK + ++ Q A G +P+ +TY ++ +C ++ A++++
Sbjct: 161 TVNVLINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDV 219
Query: 72 LSDSGFKPDCFVYNTIM 88
+ G PD F YN ++
Sbjct: 220 MVQEGHDPDVFTYNIVV 236
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LC L + + M S G + +TY +ID +C + EA
Sbjct: 332 PDEVTYNTLIDNLCSLGKLGKALDLLKDME-STGCPRSTITYNTIIDGLCKKMRIEEAEE 390
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + +NT++ G
Sbjct: 391 VFDQMDLQGISRNAITFNTLIDG 413
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ TYN ++ CK + + ++ M A+ G + ++VTY LI+ +C
Sbjct: 430 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAG 488
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ A++++ + G +P YN +++
Sbjct: 489 RTQVALKVLRGMRIKGMRPTPKAYNPVLQ 517
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L+ LCK + MR G++P Y ++ ++ N+R+A+ L
Sbjct: 473 DVVTYGTLINGLCKAGRTQVALKVLRGMRIK-GMRPTPKAYNPVLQSLFRRNNIRDALSL 531
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++ G PD Y + +G
Sbjct: 532 FREMAEVGEPPDALTYKIVFRG 553
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TYN L+ CLC + V+ ++ S + +++TY I+I +C T L+EA
Sbjct: 915 VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS-EMDVDIITYNIIIQGLCRTDKLKEA 973
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +L+ G KPD Y T++ G
Sbjct: 974 WCLFRSLTRKGVKPDAIAYITMISG 998
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ TYN ++ LC L D M AS G PN+VTY LI C +
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM-ASKGCFPNVVTYNTLISGFCKFR 330
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E M+L +S GF D F YNT++ GY
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++FTYN L+ C L D M S G P++VTY LI C +K
Sbjct: 805 MIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM-VSKGCFPDVVTYNTLITGFCKSK 863
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L ++ G D F YNT++ GY
Sbjct: 864 RVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 894
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ ++ L D FTYN L+ C+ L ++M G+ P++VTY IL+D +CN
Sbjct: 875 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM-VDCGVSPDIVTYNILLDCLCNNG 933
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +V L S D YN I++G
Sbjct: 934 KIEKALVMVEDLQKSEMDVDIITYNIIIQG 963
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + + +M LG +P++VT+ L+ C + +A
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKM-MKLGYEPSIVTFGSLLHGFCLVNRIGDA 160
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
LV + SG++P+ VYNT++ G
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDG 185
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + +M LG +P++VT L++ C +EA
Sbjct: 635 ISHDLYSFTILIHCFCRCSRLSLALALLGKM-MKLGFRPSIVTLGSLLNGFCQGNRFQEA 693
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV ++ GF P+ +YNT++ G
Sbjct: 694 VSLVDSMDGFGFVPNVVIYNTVING 718
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P I T+ L+ C + ++ V M S G +PN+V Y LID +C L A+
Sbjct: 138 EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEPNVVVYNTLIDGLCKNGELNIAL 196
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G D YNT++ G
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTG 220
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L D+ TYN L+ LC + + D M+ S I P++VT+T LID NL
Sbjct: 205 KGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS--INPDVVTFTALIDVFVKQGNL 262
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + S P+ YN+I+ G
Sbjct: 263 DEAQELYKEMIQSSVDPNNVTYNSIING 290
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI TYN +++ LC+ L + + G+KP+ + Y +I +C RE
Sbjct: 949 EMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRK-GVKPDAIAYITMISGLCRKGLQRE 1007
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + + GF P +Y+ ++ +
Sbjct: 1008 ADKLCRRMKEDGFMPSERIYDETLRDH 1034
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKPNLVTYTILIDNVC 57
++ +++ PDI T+ L+ LC + + D MR S +GI V Y I+I +C
Sbjct: 377 MVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGI----VAYNIMIHGLC 432
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L L G KPD Y ++ G
Sbjct: 433 KADKVEKAWELFCRLPVEGVKPDARTYTIMILG 465
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D TYN L+ L T + M I PN++ +T LID NL
Sbjct: 738 KGIRADAVTYNTLISGLSNSGRWTDAARLLRDM-VKRKIDPNVIFFTALIDTFVKEGNLL 796
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + P+ F YN+++ G+
Sbjct: 797 EARNLYKEMIRRSVVPNVFTYNSLINGF 824
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I YN ++ LCK + + ++ G+KP+ TYTI+I +C REA L+
Sbjct: 421 IVAYNIMIHGLCKADKVEKAWELFCRLPVE-GVKPDARTYTIMILGLCKNGPRREADELI 479
Query: 70 SALSDSG 76
+ + G
Sbjct: 480 RRMKEEG 486
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ Q P I + L+ R TV F +M GI +L ++TILI C
Sbjct: 62 MVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMEL-YGISHDLYSFTILIHCFCRCS 120
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L A+ ++ + G++P + +++ G+
Sbjct: 121 RLSFALSVLGKMMKLGYEPSIVTFGSLLHGF 151
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ LCK R L M GI+ + VTY LI + N+ +A R
Sbjct: 707 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKK-GIRADAVTYNTLISGLSNSGRWTDAAR 765
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + P+ + ++
Sbjct: 766 LLRDMVKRKIDPNVIFFTALI 786
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK R + +M G ++ TY LI C LR A+
Sbjct: 314 PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE-GFNADIFTYNTLIHGYCQVGKLRVALD 372
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + PD + ++ G
Sbjct: 373 IFCWMVSRRVTPDIITHCILLHG 395
>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
Length = 1295
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y+ LV LCK L Y+ +++M A GI PN V+Y+ L+ +C T + A++
Sbjct: 970 PDVHSYSILVDGLCKQGDLLKGYDMLEEM-ARNGICPNQVSYSSLLHGLCKTGQVALALK 1028
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L D GF+ D Y+ I+ G
Sbjct: 1029 IFKNLQDHGFEHDQINYSIILHG 1051
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ Y ++ LCK + V+N F D ++ G P++V Y+I+I+ L+EA+
Sbjct: 1146 PNLCMYRVMINGLCKTNKYSGVWNVFADMIKR--GYVPDVVLYSIIIEGFVKALKLQEAL 1203
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + D G KP+ F Y++++ G
Sbjct: 1204 RLYHKMLDEGVKPNIFTYSSLING 1227
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I T LV K + + F+D+M SLGI PNL Y ++I+ +C T
Sbjct: 1108 LSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGV 1167
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G+ PD +Y+ I++G+
Sbjct: 1168 WNVFADMIKRGYVPDVVLYSIIIEGF 1193
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ Y+ +++ K L +M G+KPN+ TY+ LI+ +CN
Sbjct: 1174 MIKRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDE-GVKPNIFTYSSLINGLCNDD 1232
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EAM L+ + D +Y +I+ Y
Sbjct: 1233 RLPEAMGLIRDMIGEDLLLDNVLYTSIIACY 1263
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN--LREAMRLVSA 71
NFL+KCL + + + D M+ S G PN+ +Y+IL+ + + L EA L+
Sbjct: 834 NFLLKCLVEGNQIMYARSLFDDMK-SCGPSPNVCSYSILMSMYTHGERSCLEEAFELLCE 892
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ +G +P+ Y T + G
Sbjct: 893 MESNGVRPNATTYGTYLYG 911
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 8 PDIFTYNFLVKCLCKCRS--LTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
P++ +Y+ L+ L + + +M ++ G++PN TY + +C ++ + A
Sbjct: 863 PNVCSYSILMSMYTHGERSCLEEAFELLCEMESN-GVRPNATTYGTYLYGLCRSRQVTSA 921
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ LS SG + +N ++ G+
Sbjct: 922 WDFLQTLSQSGGPCSNYCFNAVIHGF 947
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ Y L+ LC+ + +D+M G++PN+VTY +LI+++C +++
Sbjct: 212 RGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMER-GLEPNVVTYNVLINSMCKEGSVK 270
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L + + + G D YNT++ G
Sbjct: 271 EAMSLRNNMLEKGVALDAVTYNTLITG 297
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +Y L++ LC R + M+AS G++P++VTY LI +C+ ++ +A+
Sbjct: 111 PTAVSYTTLMRALCAERRTGQAVGLLRDMQAS-GVRPDVVTYGTLIRGLCDAADVDKAVE 169
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG +P+ VY+ +++GY
Sbjct: 170 LLREMCESGIEPNVVVYSCLLQGY 193
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N ++ LCK + + D M A G NLVT+ +LI + +++AM
Sbjct: 323 PNVVTFNSVIHGLCKTGRMRQAFQVRDMM-AENGCACNLVTFNLLIGGLLRVHKVKKAME 381
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ SG +PD F Y+ ++ G+
Sbjct: 382 LMDEMASSGLEPDSFTYSILINGF 405
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ Y+ ++ C+ R + F+ M G+ P+ VTY++LI+ N+ +L A R+
Sbjct: 463 DVVAYSTMIHGACRLRDRKSAEEFLKHMLDE-GLIPDSVTYSMLINMFANSGDLGAAERV 521
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ ++ SGF PD V+++++KGY
Sbjct: 522 LKQMTASGFVPDVAVFDSLIKGY 544
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ Y+ L++ CK V ++M + GI+P++V YT LID++C +++A
Sbjct: 179 IEPNVVVYSCLLQGYCKAGRWECVSKVFEEM-SGRGIEPDVVMYTGLIDSLCREGKVKKA 237
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+++ + + G +P+ YN ++
Sbjct: 238 TQVMDKMMERGLEPNVVTYNVLI 260
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ LC + + +M S GI+PN+V Y+ L+ C +
Sbjct: 146 PDVVTYGTLIRGLCDAADVDKAVELLREMCES-GIEPNVVVYSCLLQGYCKAGRWECVSK 204
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +S G +PD +Y ++
Sbjct: 205 VFEEMSGRGIEPDVVMYTGLI 225
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ T+N L+ L + + +D+M AS G++P+ TY+ILI+ C + A L
Sbjct: 359 NLVTFNLLIGGLLRVHKVKKAMELMDEM-ASSGLEPDSFTYSILINGFCKMWQVDRAESL 417
Query: 69 VSALSDSGFKPDCFVY 84
+S + G +P+ Y
Sbjct: 418 LSKMRRDGIEPELVHY 433
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ L+ CK + + + +MR GI+P LV Y L+ +C + +A
Sbjct: 391 LEPDSFTYSILINGFCKMWQVDRAESLLSKMRRD-GIEPELVHYIPLLAALCEQGMMEQA 449
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + K D Y+T++ G
Sbjct: 450 RNFFDEMHKN-CKLDVVAYSTMIHG 473
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 2 IFKQLPP--DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+ LP D +YN ++ LC+ F+ ++ A +P V+YT L+ +C
Sbjct: 68 LLSSLPSVRDAVSYNTVLAALCRQGGCLDAALFLLRVMAH-ETRPTAVSYTTLMRALCAE 126
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L+ + SG +PD Y T+++G
Sbjct: 127 RRTGQAVGLLRDMQASGVRPDVVTYGTLIRG 157
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ Y L+ LC+ + NF D+M + K ++V Y+ +I C ++ + A
Sbjct: 426 IEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN--CKLDVVAYSTMIHGACRLRDRKSA 483
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G PD Y+ ++ +
Sbjct: 484 EEFLKHMLDEGLIPDSVTYSMLINMF 509
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNT 59
++ K + D TYN L+ L + +++M ++PN+VT+ +I +C T
Sbjct: 279 MLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKT 338
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+R+A ++ ++++G + +N ++ G
Sbjct: 339 GRMRQAFQVRDMMAENGCACNLVTFNLLIGG 369
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TY+ L+ CK R + + ++QM + GI P +VTY IL++++C
Sbjct: 280 MVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM-VTQGIAPTVVTYNILLNSLCRAD 338
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A +L ++ P YNT+++
Sbjct: 339 KLEDAFKLFRGMAQRRCHPTVVTYNTLLRA 368
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TYN L+ LCK + T Y +M A G P V+Y LID C K
Sbjct: 175 MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEM-AGKGYVPTEVSYNTLIDGFCKKK 233
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A + + S P+ Y T++ G
Sbjct: 234 DLVAAKDVFDKMVRSNCVPNVVTYTTLIDG 263
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD F YNF++ LC+ + ++M I PN+VTY LI+ +C +
Sbjct: 143 RGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM-VKQRINPNVVTYNTLINGLCKAWRIE 201
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L ++ G+ P YNT++ G+
Sbjct: 202 TAYELFKEMAGKGYVPTEVSYNTLIDGF 229
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TYN L+ LC+ L + M A P +VTY L+ +C+ K
Sbjct: 315 MVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM-AQRRCHPTVVTYNTLLRALCHHK 373
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A RL + + G PD Y+T+ G
Sbjct: 374 QLDGAHRLYAEMIAKGCPPDAITYDTLAWG 403
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ L K + +D M G+ PN+ TY+ LID C + + EA +
Sbjct: 252 PNVVTYTTLIDGLSKSGKVQAAAEVLDGM-VKKGVTPNVATYSCLIDGFCKVRRVDEAHK 310
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G P YN ++
Sbjct: 311 LLEQMVTQGIAPTVVTYNILL 331
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K+ Y+ ++ LCK + +++M + P+ +TY +++ +C TK +
Sbjct: 73 LKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM--ARYAPPDALTYGPIVERLCKTKRI 130
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ V ++ G KPD F+YN ++ G
Sbjct: 131 DDALATVEEMATRGIKPDAFIYNFVLSG 158
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ P +YN L+ CK + L + D+M S + PN+VTYT LID +
Sbjct: 206 LFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCV-PNVVTYTTLIDGL 264
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ A ++ + G P+ Y+ ++ G+
Sbjct: 265 SKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 299
>gi|255660968|gb|ACU25653.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 376
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ CK + YN V ++ G+ P ++TY++L++ +C + A++
Sbjct: 197 PTIITYNTLINGFCKNKMFGEAYNLVKELLDK-GLDPGVITYSMLMEGLCFDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-GAFAYSAMINGLCKEANLDRAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMELALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN ++G
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLEG 348
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ CK R + F +M+ GI PN TYTILI+ CN +
Sbjct: 616 KGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEK-GIFPNKYTYTILINENCNMGKWQ 674
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+RL + + +PD + ++K
Sbjct: 675 EALRLYAQMLGKRIRPDSCTHGALLK 700
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PDI +YN L+ C+ ++ + +D++R + N+VTY LID +C
Sbjct: 368 MLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFR-NLSFNIVTYNTLIDGLCRLG 426
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A++L + + G PD Y ++ G
Sbjct: 427 DLETALKLKEDMINRGIHPDVVTYTVLVNG 456
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L F+ L +I TYN L+ LC+ L T + M + GI P++VTYT+L++ C
Sbjct: 403 LRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDM-INRGIHPDVVTYTVLVNGACKLG 461
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A + G PD F Y + G
Sbjct: 462 NMLMAKEFFDEMLHVGLAPDQFAYTARIVG 491
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ TY LV CK ++ F D+M +G+ P+ YT I
Sbjct: 438 MINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEM-LHVGLAPDQFAYTARIVGELKLG 496
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A +L + GF PD YN + G
Sbjct: 497 DTAKAFKLQEEMLTKGFPPDVITYNVFVNG 526
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ CK + + V +M+ G P+ VT+ +LI+ + L++A
Sbjct: 235 PTVTTYNTMLHSFCKGGEVQRALDLVPKMQER-GCYPSEVTFNVLINGLSKKGELQQAKG 293
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ +G + + YN ++ GY
Sbjct: 294 LIQEMAKAGLRVSPYTYNPLICGY 317
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD F Y + K + ++M G P+++TY + ++ +C NL EA
Sbjct: 478 LAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTK-GFPPDVITYNVFVNGLCKLGNLEEA 536
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G PD Y + M +
Sbjct: 537 GELLQKMIRDGHVPDHVTYTSFMHAH 562
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PPD+ TYN V LCK +L + +M G P+ VTYT +
Sbjct: 508 MLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRD-GHVPDHVTYTSFMHAHMENG 566
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+LRE + + G P Y ++ +
Sbjct: 567 HLREGREIFYDMLSRGQTPTVVTYTVLIHAH 597
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T+N L+ L K L + +M A G++ + TY LI C L EA+
Sbjct: 270 PSEVTFNVLINGLSKKGELQQAKGLIQEM-AKAGLRVSPYTYNPLICGYCKKGLLVEALA 328
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G P +NTIM G+
Sbjct: 329 LWEEMVTRGVSPTVASHNTIMYGF 352
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ N ++K L + ++L V +M GI+P + TY ++ + C ++ A+
Sbjct: 200 PDVKNCNRILKIL-RDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALD 258
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + G P +N ++ G
Sbjct: 259 LVPKMQERGCYPSEVTFNVLING 281
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TYN L+ CK L ++M + G+ P + ++ ++ C + +A + +S
Sbjct: 308 YTYNPLICGYCKKGLLVEALALWEEM-VTRGVSPTVASHNTIMYGFCKEGKMSDARQQLS 366
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ PD YNT++ G+
Sbjct: 367 DMLKKNLMPDIISYNTLIYGF 387
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L+ LCK + ++M + G+ PN VT+T LID C + A
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEANELFNEMLDN-GLVPNGVTFTTLIDGHCKNGRVDLA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + L GF PD YNT++ G
Sbjct: 261 MEIYKQLLSQGFSPDLITYNTLIFG 285
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I+KQL PD+ TYN L+ LCK L + +D+M +KP+ +TYT LID
Sbjct: 263 IYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMK-ELKPDKITYTTLIDGS 321
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +L A + + D Y ++ G
Sbjct: 322 CKEGDLETAFEYRKRMIKENIRLDDVAYTALISG 355
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ + L + M AS G++P++ TY++LI+ +C + EA
Sbjct: 167 LRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDEA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + D+G P+ + T++ G+
Sbjct: 226 NELFNEMLDNGLVPNGVTFTTLIDGH 251
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D + G++P++V++ L+ +L E
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDAI-TKWGLRPSVVSFNTLMSGYIRLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ SG +PD + Y+ ++ G
Sbjct: 192 RLKSAMHASGVQPDVYTYSVLING 215
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ L+ CK + Q+ S G P+L+TY LI +C +L++A
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQL-LSQGFSPDLITYNTLIFGLCKKGDLKQA 295
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ +S KPD Y T++ G
Sbjct: 296 RDLIDEMSMKELKPDKITYTTLIDG 320
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL----VTYTILIDNVCNT 59
K+L PD TY L+ CK L T + + +M IK N+ V YT LI +C
Sbjct: 305 KELKPDKITYTTLIDGSCKEGDLETAFEYRKRM-----IKENIRLDDVAYTALISGLCQE 359
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A +++ + G KPD Y I+
Sbjct: 360 GRSVDAEKMLRGMLSVGLKPDNGTYTMII 388
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+++ L K + V+ F ++ G +L + IL+ C +R A + A++
Sbjct: 107 VLEHLMKLKYFKLVWGFYKEI-LECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKW 165
Query: 76 GFKPDCFVYNTIMKGY 91
G +P +NT+M GY
Sbjct: 166 GLRPSVVSFNTLMSGY 181
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC L +D+M P+++TYTILI+ C + A
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM-LQRDCYPDVITYTILIEATCRDSGVGHA 258
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M+L+ + D G PD YN ++ G
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNG 283
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ C+ + +D+MR G P++VTY +L++ +C L EA++
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMR-DRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + SG +P+ +N I++
Sbjct: 296 FLNDMPSSGCQPNVITHNIILR 317
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV +CK L F++ M +S G +PN++T+ I++ ++C+T +A +
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIILRSMCSTGRWMDAEK 330
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + GF P +N ++
Sbjct: 331 LLADMLRKGFSPSVVTFNILI 351
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK + ++Q+ +S G P L+TY +ID + +A++
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQL-SSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + KPD Y++++ G
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGG 493
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I +++P P+ +YN L+ CK + + ++++M S G P++VTY ++ +
Sbjct: 366 ILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM-VSRGCYPDIVTYNTMLTAL 424
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + +A+ +++ LS G P YNT++ G
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K P + TYN ++ L K +D+MRA +KP+ +TY+ L+ +
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK-DLKPDTITYSSLVGGLSREG 498
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++ G +P+ +N+IM G
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ CK + + +D+M S P++VTY ++ ++C++ L++AM
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAME 225
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + PD Y +++
Sbjct: 226 VLDRMLQRDCYPDVITYTILIE 247
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + T+N L+ LC+ L + +++M G +PN ++Y L+ C K
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM-PQHGCQPNSLSYNPLLHGFCKEK 393
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YNT++
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTML 421
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ T+N +++ +C R + D +R G P++VT+ ILI+ +C L A+
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRK--GFSPSVVTFNILINFLCRKGLLGRAI 364
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G +P+ YN ++ G+
Sbjct: 365 DILEKMPQHGCQPNSLSYNPLLHGF 389
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ LV L + + F + +GI+PN VT+ ++ +C ++
Sbjct: 478 KDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE-RMGIRPNAVTFNSIMLGLCKSRQTD 536
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + + G KP+ Y +++G
Sbjct: 537 RAIDFLVFMINRGCKPNETSYTILIEG 563
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N ++ LCK R +F+ M + G KPN +YTILI+ + +EA+
Sbjct: 517 PNAVTFNSIMLGLCKSRQTDRAIDFLVFM-INRGCKPNETSYTILIEGLAYEGMAKEALE 575
Query: 68 LVSALSDSGF 77
L++ L + G
Sbjct: 576 LLNELCNKGL 585
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ + N L + + + L + F++ M G P+++ T LI C R+A ++
Sbjct: 102 DVESNNHL-RQMVRTGELEEGFKFLENM-VYHGNVPDIIPCTTLIRGFCRLGKTRKAAKI 159
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ L SG PD YN ++ GY
Sbjct: 160 LEILEGSGAVPDVITYNVMISGY 182
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ LCK + T ++QM +S G N+V Y+ ++D +C +EA
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ A++ +G +PD Y++++ G
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNG 337
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N L+ C+ ++L + + +M AS G+K ++VTY L+D +C L+EA +
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQKMAAS-GVKADVVTYNTLMDGLCKAGRLQEAEQ 208
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + SG PD Y++ + G
Sbjct: 209 LLERMKASGCAPDVVAYSSFVYG 231
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+ LCK L +++M+AS G P++V Y+ + +C + + +A ++
Sbjct: 186 DVVTYNTLMDGLCKAGRLQEAEQLLERMKAS-GCAPDVVAYSSFVYGLCKSGKVLDAHQV 244
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + DS P+ YNTI+ G
Sbjct: 245 LEQMRDSHHDPNVVTYNTILDG 266
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+I + L PD Y +V LCK R + + +RA G P L+T+ LI C
Sbjct: 108 VISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRA--GCCPTLITFNTLISGCCRE 165
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
KNL A L+ ++ SG K D YNT+M G
Sbjct: 166 KNLEMADSLLQKMAASGVKADVVTYNTLMDG 196
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ LV LCK + V +M A G KPN VTY L+ +C+ L EA R
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREM-AMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384
Query: 68 LVSALSDSGFK-----PDCFVYNTIMKG 90
+V +S G P YN ++ G
Sbjct: 385 MVEEMSSGGGGGHHCPPSVSTYNALIGG 412
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-IKPNLVTYTILIDNVCNTKNL 62
+ + P++ +YN L++ LCK V M + G P++VTY+ L+ C +
Sbjct: 39 RDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKV 98
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
E+ L+ + G +PD +Y ++
Sbjct: 99 EESRELLKEVISRGLRPDALMYTKVV 124
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK----PNLVTYTILIDNVCNTKNLR 63
P+ TY LV LC C L V++M + G P++ TY LI +C +
Sbjct: 361 PNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRID 420
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++ + G PD Y+TI++G
Sbjct: 421 DALKFFQRMRSQGCDPDGVSYSTIVEG 447
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ V LCK + + ++QMR S PN+VTY ++D +C + + A+
Sbjct: 220 PDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHH-DPNVVTYNTILDGLCKSGKIDTALE 278
Query: 68 LVSALSDS-GFKPDCFVYNTIMKG 90
++ ++ S G + Y+T++ G
Sbjct: 279 MMEQMASSDGCGLNVVGYSTVVDG 302
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ T+N LV K ++ M A+ I+PN+V+Y L++ +C + EA
Sbjct: 7 PPNSVTFNALVNGFSKQGRPGDCERLLETM-AARDIQPNVVSYNGLLEGLCKLERWHEAE 65
Query: 67 RLVSALSDSGFK--PDCFVYNTIMKGY 91
LV + G + PD Y+T++ GY
Sbjct: 66 ELVRDMISRGGRSTPDMVTYSTLLSGY 92
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + TYN L+ LCK + F +MR S G P+ V+Y+ +++ + + +A
Sbjct: 400 PPSVSTYNALIGGLCKAGRIDDALKFFQRMR-SQGCDPDGVSYSTIVEGLARSGRALQAE 458
Query: 67 RLVS 70
++S
Sbjct: 459 MILS 462
>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Brachypodium distachyon]
Length = 841
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN ++ C + +++ F+++M A G +P++ TY I + ++CN L A
Sbjct: 626 LTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLAD-GCEPDIFTYNIWMHSLCNNHLLNRA 684
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++++ L G P+ YNT+M G
Sbjct: 685 VKMLDELVAMGCMPNSVTYNTLMDG 709
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN L+K + +D+MR S G +P +VTY IL++ +C+ N+ +A R
Sbjct: 243 PDACSYNILIKGYSVFGQAGDAFQLLDEMRES-GCQPTVVTYNILVNVLCHDGNMVDARR 301
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G + + +N ++ GY
Sbjct: 302 LFDEMVKVGIEANTITFNVLVDGY 325
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD+FT N L+ CK L + F+D + G+ P++VTY +I+ C +++
Sbjct: 591 LIPDVFTSNILIDGFCKEGRLDMMNKRFLDMYNS--GLTPDVVTYNTIINAYCGAQDMSS 648
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
AM ++ + G +PD F YN M
Sbjct: 649 AMIFMNKMLADGCEPDIFTYNIWM 672
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ C+ ++ +MR S G+ P++ T ILID C L +
Sbjct: 558 PNNITYNSLISAFCRVGYVSEALKLEKKMRQS-GLIPDVFTSNILIDGFCKEGRLDMMNK 616
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +SG PD YNTI+ Y
Sbjct: 617 RFLDMYNSGLTPDVVTYNTIINAY 640
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN + LC L +D++ A +G PN VTY L+D +C + L AM
Sbjct: 663 PDIFTYNIWMHSLCNNHLLNRAVKMLDELVA-MGCMPNSVTYNTLMDGIC-SDVLDRAMI 720
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L F+P+ N +
Sbjct: 721 LTGKLIKMAFQPNTVTVNVFFSHF 744
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN LV LC ++ D+M +GI+ N +T+ +L+D + EA
Sbjct: 278 PTVVTYNILVNVLCHDGNMVDARRLFDEM-VKVGIEANTITFNVLVDGYAKAGRMDEAYA 336
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G PDC +N + G
Sbjct: 337 ACREMKARGLVPDCCTFNILSAG 359
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++ + LC+ + Y +M G PN +TY LI C + EA++
Sbjct: 523 PDFIAFSAYISGLCRLDHVNEAYQAFVEMTGR-GFVPNNITYNSLISAFCRVGYVSEALK 581
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + SG PD F N ++ G+
Sbjct: 582 LEKKMRQSGLIPDVFTSNILIDGF 605
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 29/52 (55%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+G++P+ + ++ I +C ++ EA + ++ GF P+ YN+++ +
Sbjct: 519 VGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGFVPNNITYNSLISAF 570
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK L + + +M +G++PN+ TY +++ +C + N+ EA++
Sbjct: 897 PNVVTYTTLIDGLCKEGDLDSANELLHEM-WKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 955
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV +G D Y T+M Y
Sbjct: 956 LVGEFEAAGLNADTVTYTTLMDAY 979
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+IFTYN +V LCK ++ V + A+ G+ + VTYT L+D C + + +A
Sbjct: 930 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCKSGEMDKA 988
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G +P +N +M G+
Sbjct: 989 QEILKEMLGKGLQPTIVTFNVLMNGF 1014
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD T+ L+ CK + + + M + G PN+VTYT LID +C +L
Sbjct: 858 KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA-GCSPNVVTYTTLIDGLCKEGDLD 916
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + G +P+ F YN+I+ G
Sbjct: 917 SANELLHEMWKIGLQPNIFTYNSIVNG 943
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P+ + Y ++ LC+ C+ F + +R GI P+ V YT LID C ++
Sbjct: 753 KGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--GILPDTVVYTTLIDGFCKRGDI 810
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
R A + + PD Y I+ G+
Sbjct: 811 RAASKFFYEMHSRDITPDVLTYTAIISGF 839
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD Y L+ CK + F +M S I P+++TYT +I C
Sbjct: 785 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH-SRDITPDVLTYTAIISGFCQIG 843
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ EA +L + G +PD + ++ GY
Sbjct: 844 DMVEAGKLFHEMFCKGLEPDSVTFTELINGY 874
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ T+N LVK C +L M S G+ P+ TY L+ C +
Sbjct: 1030 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM-CSRGVGPDGKTYENLVKGHCKAR 1088
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++EA L + GF Y+ ++KG+
Sbjct: 1089 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 1119
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 1 LIFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++F++ P ++ +YN ++ +C+ + ++ + M G P++++Y+ +++
Sbjct: 675 IVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK-GYTPDVISYSTVVNG 733
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C L + +L+ + G KP+ ++Y +I+
Sbjct: 734 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSII 766
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+G+ N+ +Y I+I VC ++EA L+ + G+ PD Y+T++ GY
Sbjct: 683 VGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 734
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY LVK CK R++ + +M+ G ++ TY++LI K EA
Sbjct: 1072 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGK-GFSVSVSTYSVLIKGFLKRKKFLEARE 1130
Query: 68 LVSALSDSGFKPDCFVYN 85
+ + G D +++
Sbjct: 1131 VFDQMRREGLAADKEIFD 1148
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ CK +D+MRA G P+++TY ++++ +C + +A+
Sbjct: 189 PDVVTYTILLEATCKRSGYKQAMKLLDEMRAK-GCAPDIITYNVVVNGICQEGRVDDAIE 247
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +L G +P+ YN ++KG
Sbjct: 248 FLKSLPSHGCEPNTVSYNIVLKG 270
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLC-KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD +TYN L++ LC + R+ + D +R G P++VTYTIL++ C ++
Sbjct: 152 MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRR--GCVPDVVTYTILLEATCKRSGYKQ 209
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
AM+L+ + G PD YN ++ G
Sbjct: 210 AMKLLDEMRAKGCAPDIITYNVVVNG 235
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN +V +C+ + F+ + S G +PN V+Y I++ +C +
Sbjct: 220 KGCAPDIITYNVVVNGICQEGRVDDAIEFLKSL-PSHGCEPNTVSYNIVLKGLCTAERWE 278
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A +L++ +S G+ P+ +N ++
Sbjct: 279 DAEKLMAEMSQKGYPPNVVTFNMLI 303
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP++ T+N L+ LC+ + +DQ+ G PN ++Y ++ C K +
Sbjct: 290 KGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQI-PKYGCTPNSLSYNPILHAFCKQKKMD 348
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
AM V + G PD YNT++
Sbjct: 349 RAMAFVELMVSRGCYPDIVSYNTLL 373
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+ Q+P P+ +YN ++ CK + + FV+ M S G P++V+Y L+ +
Sbjct: 318 VLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM-VSRGCYPDIVSYNTLLTAL 376
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + A+ L+ L D G P YNT++ G
Sbjct: 377 CRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 410
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + +YN ++ L K +++M + G++P+++TY+ + +C +
Sbjct: 395 KGCTPVLISYNTVIDGLTKAGKTKEALELLNEM-VTKGLQPDIITYSTISSGLCREDRIE 453
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+R + D G +P+ +YN I+ G
Sbjct: 454 EAIRAFCKVQDMGIRPNTVLYNAILLG 480
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 3 FKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
K LP P+ +YN ++K LC + +M + G PN+VT+ +LI +C
Sbjct: 249 LKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEM-SQKGYPPNVVTFNMLISFLC 307
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ AM ++ + G P+ YN I+ +
Sbjct: 308 RRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAF 341
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PDI TY+ + LC+ + +++ +GI+PN V Y ++ +C +
Sbjct: 427 MVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQ-DMGIRPNTVLYNAILLGLCKRR 485
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + +G P+ Y +++G
Sbjct: 486 ETHNAIDLFIYMISNGCMPNESTYTILIEG 515
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 37 RASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
R +P+++ Y ++ C T L A RLV +D +PD + YNT+++G
Sbjct: 115 RVLAACEPDVMAYNAMVAGYCVTGQLDAARRLV---ADMPMEPDSYTYNTLIRG 165
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ LCK + T ++QM +S G N+V Y+ ++D +C +EA
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ A++ +G +PD Y++++ G
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNG 337
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N L+ C+ ++L + + M AS G+K ++VTY L+D +C L+EA +
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQTMAAS-GVKADVVTYNTLMDGLCKAGRLQEAEQ 208
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + SG PD Y++ + G
Sbjct: 209 LLERMKASGCAPDVVAYSSFVYG 231
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+ LCK L +++M+AS G P++V Y+ + +C + + A ++
Sbjct: 186 DVVTYNTLMDGLCKAGRLQEAEQLLERMKAS-GCAPDVVAYSSFVYGLCKSGKVLNAHQV 244
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + DS P+ YNTI+ G
Sbjct: 245 LEQMRDSDHDPNVVTYNTILDG 266
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+I + L PD Y ++ LCK R + + +RA G P L+T+ LI C
Sbjct: 108 VISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRA--GCCPTLITFNTLISGCCRE 165
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
KNL A L+ ++ SG K D YNT+M G
Sbjct: 166 KNLEMADSLLQTMAASGVKADVVTYNTLMDG 196
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-IKPNLVTYTILIDNVCNTKNL 62
+ + P++ +YN L++ LCK V M + G P+LVTY+ L+ C +
Sbjct: 39 RGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKV 98
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
E+ L+ + G +PD +Y +M
Sbjct: 99 EESRELLKEVISRGLRPDALMYTKVM 124
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ LV LCK + V +M A G KPN VTY L+ +C+ L EA R
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREM-AMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384
Query: 68 LVSALSDSGFK-----PDCFVYNTIMKG 90
+V +S G P YN ++ G
Sbjct: 385 MVEEMSSGGGGGDHCPPSVSTYNALIGG 412
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ T+N LV K ++ M A+ GI+PN+V+Y L++ +C + EA
Sbjct: 7 PPNSVTFNALVNGFSKQGRPGDCERLLETM-AARGIQPNVVSYNGLLEGLCKLERWHEAE 65
Query: 67 RLVSALSDSGFK--PDCFVYNTIMKGY 91
LV + G + PD Y+T++ GY
Sbjct: 66 ELVRDMISRGGRSTPDLVTYSTLLSGY 92
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ V LCK + + ++QMR S PN+VTY ++D +C + + A+
Sbjct: 220 PDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDS-DHDPNVVTYNTILDGLCKSGKIDTALE 278
Query: 68 LVSALSDS-GFKPDCFVYNTIMKG 90
++ ++ S G + Y+T++ G
Sbjct: 279 MMEQMASSDGCGLNVVGYSTVVDG 302
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK----PNLVTYTILIDNVCNTKNLR 63
P+ TY LV LC C L V++M + G P++ TY LI +C +
Sbjct: 361 PNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRID 420
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++ + G PD Y+TI++G
Sbjct: 421 DALKFFQRMRSQGCDPDGVSYSTIVEG 447
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PP + TYN L+ LCK + F +MR S G P+ V+Y+ +++ + + +A
Sbjct: 400 PPSVSTYNALIGGLCKAGRIDDALKFFQRMR-SQGCDPDGVSYSTIVEGLARSGRALQA 457
>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
Length = 833
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + +PPD+ TYN ++ LCK + + QM G+KP+ TY LI +T
Sbjct: 330 MIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDK-GVKPSNGTYNCLIHGYLSTG 388
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+E +RL+ +S +PDCF+Y ++
Sbjct: 389 KWKEVVRLLEEMSTHDLEPDCFIYALLL 416
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +YN ++ + + YN QM GI P++VTY +ID +C + + A
Sbjct: 301 PPDVVSYNTVINGFFREGQVDKAYNLFLQM-IDRGIPPDVVTYNTVIDGLCKAQVVDRAK 359
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G KP YN ++ GY
Sbjct: 360 AVFQQMLDKGVKPSNGTYNCLIHGY 384
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ +N L+ LC+ + ++ M +G++P++++Y L+D C T EA +L
Sbjct: 522 DVVVFNTLMCDLCREGRVMEAQRLIELM-LRVGVRPDVISYNTLVDGHCLTGRTDEAAKL 580
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G KP+ F YNT++ GY
Sbjct: 581 LDVMVSIGLKPNEFTYNTLLHGY 603
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN LV C +D M S+G+KPN TY L+ C + + +A
Sbjct: 556 PDVISYNTLVDGHCLTGRTDEAAKLLDVM-VSIGLKPNEFTYNTLLHGYCKARRIDDAYS 614
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G PD YNTI+ G
Sbjct: 615 LLREMLMNGPTPDVVTYNTILHG 637
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N L+K LC + L N + G PN+V+Y L+ CN EA+ L+ +
Sbjct: 233 FNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVM 292
Query: 73 SDS---GFKPDCFVYNTIMKGY 91
+D PD YNT++ G+
Sbjct: 293 ADDQGLSCPPDVVSYNTVINGF 314
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ FTYN L+ CK R + Y+ + +M + G P++VTY ++ + T EA
Sbjct: 589 LKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMN-GPTPDVVTYNTILHGLFQTGRFSEA 647
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + +S + D + YN I+ G
Sbjct: 648 KELYLNMINSRTQWDMYTYNIILNG 672
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK--PNLVTYTILIDNVCNTKNLREA 65
P++ +YN LVK C + M G+ P++V+Y +I+ + +A
Sbjct: 264 PNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKA 323
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + D G PD YNT++ G
Sbjct: 324 YNLFLQMIDRGIPPDVVTYNTVIDG 348
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD TY+ L+ C C+ L + V + G + N + + L+ +C+ K L E
Sbjct: 190 KVAPDRCTYSILIGCFCRMGRLEHGFA-VFGLILKTGWRVNHIVFNQLLKGLCDAKRLDE 248
Query: 65 AMR-LVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + + G P+ YNT++KG+
Sbjct: 249 ATNILLWRMPEFGCTPNVVSYNTLVKGF 276
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 45/127 (35%)
Query: 6 LPPDIFTYNFLVKCLCK---CRSLTTVYNFV------------------DQMRASLGIKP 44
L PD F Y L+ LCK C +++ V D+MR G+ P
Sbjct: 405 LEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQ-GLSP 463
Query: 45 NLVTYTILID-----------------------NVCNTKNLREAMRLVSALSDSGFKPDC 81
N+V Y LID +C + +A LV + D G + D
Sbjct: 464 NVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDV 523
Query: 82 FVYNTIM 88
V+NT+M
Sbjct: 524 VVFNTLM 530
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++TYN ++ LCK + + Q S G++ +++T+ I+I + +AM L
Sbjct: 662 DMYTYNIILNGLCKNNCVDEAFKMF-QSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDL 720
Query: 69 VSALSDSGFKPDCFVYNTI 87
+ +S G PD Y I
Sbjct: 721 FATISAYGLVPDVETYCLI 739
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++TY+ + C C+ L+ + +M LG +P++VT + L++ C++K + +A
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKM-MKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G+KPD F + T++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHG 197
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ +IF YN +++ +CK + ++ SL IKP++VTY +I +C+ + L+E
Sbjct: 498 EMELNIFIYNTMIEGMCKAGKVGEAWDLF----CSLSIKPDVVTYNTMISGLCSKRLLQE 553
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 554 ADDLFRKMKEDGTLPNSGTYNTLIRA 579
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM +G KP+ T+T LI + EA+
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQM-VEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
LV + G +PD Y T++ G
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNG 232
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ ++ +N ++ LCK R + + +M GI+PN+VTY LI+ +CN +
Sbjct: 253 RIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK-GIRPNVVTYNSLINCLCNYGRWSD 311
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + P+ +N ++ +
Sbjct: 312 ASRLLSNMLEKKINPNVVTFNALIDAF 338
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ CLC + + M I PN+VT+ LID L
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK-KINPNVVTFNALIDAFFKEGKLV 345
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD YN ++ G+
Sbjct: 346 EAEKLHEEMIQRSIDPDTITYNLLINGF 373
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K V + +QM+ +LGI +L TY+I I+ C L A+
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQ-TLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G++PD ++++ GY
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGY 163
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++FKQ+ P DI TY+ L+ LC L T ++ S ++ N+ Y +I+
Sbjct: 454 MVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKS-EMELNIFIYNTMIEG 512
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C + EA L +LS KPD YNT++ G
Sbjct: 513 MCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISG 544
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN L+ C L M S PN+ TY LI+ C K
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFM-VSKDCLPNIQTYNTLINGFCKCK 412
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + L +S G + Y TI++G+
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGF 443
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+ L+ L + VDQM G +P+LVTY +++ +C ++ A+
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQM-VQRGCQPDLVTYGTVVNGLCKRGDIDLALN 244
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + + K + ++NTI+
Sbjct: 245 LLNKMEAARIKANVVIFNTII 265
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD +TYN L+ K + + +M+A + P+ TY++LI +C++
Sbjct: 407 MLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKAR-KLTPSPFTYSVLISGLCHSS 465
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L++A ++ + +G KP+ F+Y T++K Y
Sbjct: 466 DLQKANEVLDQMIRNGVKPNVFMYGTLIKAY 496
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F YN L+ CK + D+M + GI PN+V Y LI+ +C + +A
Sbjct: 659 PDVFLYNSLISGFCKEGDIEKASQLYDEMLHN-GINPNIVVYNTLINGLCKLGEVTKARE 717
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + PD Y+TI+ GY
Sbjct: 718 LFDEIEEKDLVPDVVTYSTIIDGY 741
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+I YN L+ LCK +T D++ + P++VTY+ +ID C +
Sbjct: 687 MLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEK-DLVPDVVTYSTIIDGYCKSG 745
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL EA +L + G PD ++Y ++ G
Sbjct: 746 NLTEAFKLFDEMISKGISPDGYIYCILIDG 775
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ P++FTYN + LC+ ++ V ++ G+ P+ TYT+L+D C K +
Sbjct: 270 KECKPNLFTYNAFIGGLCQTGAVDEALE-VKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + ++ SG P+ F Y ++ G+
Sbjct: 329 EAKLIFESMPSSGLNPNRFTYTALIDGF 356
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
LIF+ +P P+ FTY L+ K ++ D+M + G+K N+VTY +I
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEM-ITRGLKLNVVTYNAMIGG 390
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +AM L + + +G +PD + YN ++ GY
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGY 426
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD++TY ++K CK + + +M KPNL TY I +C T
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE--CKPNLFTYNAFIGGLCQTG 290
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+ + + + G PD Y ++ G+
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TY+ ++ CK +LT + D+M S GI P+ Y ILID NL
Sbjct: 725 KDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEM-ISKGISPDGYIYCILIDGCGKEGNLE 783
Query: 64 EAMRL 68
+A+ L
Sbjct: 784 KALSL 788
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+F YN L+ LC+ + + + M GIKPN TY I+ +
Sbjct: 512 MIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDM-GEKGIKPNAHTYGAFINLYSKSG 570
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A R + SG P+ +Y ++KG+
Sbjct: 571 EIQVAERYFKDMLSSGIVPNNVIYTILIKGH 601
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TY + K + + M +S GI PN V YTILI C+ N
Sbjct: 550 KGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSS-GIVPNNVIYTILIKGHCDVGNTV 608
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ + + G PD Y+ I+
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAII 633
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++F Y L+K + + M A+ G+ P+L Y LI +C K
Sbjct: 477 MIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIAN-GVLPDLFCYNCLIIGLCRAK 535
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L+ + + G KP+ Y + Y
Sbjct: 536 KVEEAKMLLVDMGEKGIKPNAHTYGAFINLY 566
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+N L+ CK + D M + PN+VTYTILID + + EA +L
Sbjct: 802 AFNSLIDSFCKHGKVIEARELFDDM-VDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 860
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ P+ Y +++ Y
Sbjct: 861 METRNIIPNTLTYTSLLLSY 880
>gi|219363731|ref|NP_001136745.1| hypothetical protein [Zea mays]
gi|194696880|gb|ACF82524.1| unknown [Zea mays]
gi|414875980|tpg|DAA53111.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
Length = 421
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TYN L+ R +V +D+M+ G+K ++VTY +LI +C +R+A
Sbjct: 244 ISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEK-GVKADVVTYNVLIGALCCKGEVRKA 302
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L+ + + G +P YNTI+ G+
Sbjct: 303 VKLLDEMVEVGLEPKHVAYNTIINGF 328
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT+N ++ CK L + + A G+ P++ TY LID C + +
Sbjct: 66 PDLFTFNIVISGFCKTGQLRKAGDVAKNISA-WGVAPSVATYNTLIDGYCKRGQVGKMYH 124
Query: 68 ---LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD +N ++ GY
Sbjct: 125 VDALLKEMIQAGISPDVVTFNVLINGY 151
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 1 LIFKQLPPDIFTYNFLVK--CLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
+I + PD+ T+N L+ LC+ + V++M LG+ L T +++ C
Sbjct: 132 MIQAGISPDVVTFNVLINGYWLCREGKVEDSIKLVEEME-ELGLACILSTMNSVLNGFCK 190
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA V ++ G KP+ YNT++ GY
Sbjct: 191 KGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGY 223
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ P+L T+ I+I C T LR+A + +S G P YNT++ GY
Sbjct: 64 VSPDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGY 113
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TYN L+ LC + +D+M +G++P V Y +I+ C + +
Sbjct: 277 KGVKADVVTYNVLIGALCCKGEVRKAVKLLDEM-VEVGLEPKHVAYNTIINGFCEKGDAQ 335
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
A + + + + YN +K
Sbjct: 336 GAHEIRLRMEKRKKRANVVTYNVFLK 361
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++ TYN LV + + A GI PN+ TY LI +++ R
Sbjct: 207 RGMKPNVITYNTLVDGYRRLGKMKEAAA-AKDAMAGKGISPNVKTYNCLITGFTTSRDWR 265
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
L+ + + G K D YN ++
Sbjct: 266 SVSGLLDEMKEKGVKADVVTYNVLI 290
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T N ++ CK + +VD + A G+KPN++TY L+D ++EA A
Sbjct: 180 TMNSVLNGFCKKGMMVEAEGWVDGI-AQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDA 238
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
++ G P+ YN ++ G+
Sbjct: 239 MAGKGISPNVKTYNCLITGF 258
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + + PD YN + CLC +F+ +MR ++G+KP+ TY +I + C
Sbjct: 545 LMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMR-NMGLKPDQSTYNTMIVSHCRKG 603
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++L+ + S KP+ YNT++ G
Sbjct: 604 ETAKALKLLHEMKMSSIKPNLITYNTLVAG 633
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LP D+ YN LV C+ + +D M+ + G+ PN+ TYT I C TK + EA
Sbjct: 200 LPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEA-GVDPNVATYTPFIVYYCRTKGVEEA 258
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + +G D + ++ G
Sbjct: 259 FDLYEGMVRNGVLLDVVTLSALVAG 283
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + +M+ S IKPNL+TY L+ + T + +A
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMS-SIKPNLITYNTLVAGLFGTGAVEKA 643
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ + +GF P + +++
Sbjct: 644 KYLLNEMVSAGFSPSSLTHRRVLQA 668
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKPNLVTYTILIDNVCNTKNLREAM 66
D+ TY L+ L K V D +R +L + PN VTYT+LID +C N+ EA
Sbjct: 343 DLVTYTALMDWLGKQGKTDEVK---DTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAE 399
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + P+ +++++ G+
Sbjct: 400 QVLLEMEEKSISPNVVTFSSVINGF 424
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+I T+N L+ L + + +M S G++PN +TY IL
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKS-GLEPNNLTYDILATGHGKQS 813
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N EAMRL + GF P YN ++ +
Sbjct: 814 NKVEAMRLYCEMVGKGFVPKVSTYNALISDF 844
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY L+ LCK ++ + +M I PN+VT++ +I+ L +A
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK-SISPNVVTFSSVINGFVKRGLLDKA 433
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ Y T++ G+
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGF 459
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ T + LV LC+ + Y +M +G PN VTY LID++ +E + L
Sbjct: 273 DVVTLSALVAGLCRDGRFSEAYALFREMD-KVGAAPNHVTYCTLIDSLAKAGRGKELLSL 331
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G D Y +M
Sbjct: 332 LGEMVSRGVVMDLVTYTALM 351
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 6 LPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L DI YN L++ LC R T V +++M S GI P+ +T+ LI C + +L
Sbjct: 690 LHADITVYNTLLQVLCYHGMTRKATVV---LEEMLGS-GIAPDTITFNALILGHCKSSHL 745
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + P+ +NT++ G
Sbjct: 746 DNAFATYAQMLHQNISPNIATFNTLLGG 773
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + TYN L+ K +T M+ G+ P TY IL+ +
Sbjct: 825 MVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKR-GVHPTSCTYDILVSGWSRIR 883
Query: 61 NLREAMRLVSALSDSGFKP 79
N E + + + + GF P
Sbjct: 884 NGTEVKKCLKDMKEKGFSP 902
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ T++ ++ K R L +M GI PN+VTY LID +
Sbjct: 408 KSISPNVVTFSSVINGFVK-RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQD 466
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + G K + F+ ++++ G
Sbjct: 467 AALEVYHDMLCEGVKVNKFIVDSLVNG 493
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++ PD FTYN L+ LCK L + +D+M+A G P +VTYT LI
Sbjct: 113 IFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQAR-GFSPTVVTYTTLIHGF 171
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + AM ++ + G P+ Y +++G
Sbjct: 172 CTAGRVDAAMDILDEMEHRGITPNTVTYTALIQG 205
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+FTY L++ LC L + +MRA GI PN VTYT LI+
Sbjct: 329 MVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAK-GIVPNSVTYTTLINGFTQAD 387
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
A++LV+ + +G P +Y + K
Sbjct: 388 RTDHALQLVNEMKSNGLMPAGDIYKILFK 416
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVCNTKNLREA 65
D+ YN L+ LCK L +F +M+ + G+ P++ TYT LI +C+ L EA
Sbjct: 302 DVVIYNSLIDGLCKMGEL----DFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEA 357
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ + G P+ Y T++ G+
Sbjct: 358 LGLMQEMRAKGIVPNSVTYTTLINGF 383
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LC+ F+D+M S G PN TYT LI +C + EA
Sbjct: 231 PNVVTYTQLIHGLCQKGLFEMGMEFLDEMIIS-GCFPNNATYTALIHGLCQKGSFLEAAV 289
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + G + D +YN+++ G
Sbjct: 290 LLNEMVAIGCELDVVIYNSLIDG 312
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ +Y+ + LCK + +M G P+ TY ILI+ +C L + L
Sbjct: 90 DVISYSRKINGLCKKGQIAEAMEIFREMEEK-GSAPDSFTYNILINGLCKDAQLEMGVSL 148
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + GF P Y T++ G+
Sbjct: 149 MDEMQARGFSPTVVTYTTLIHGF 171
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ LC+ S +++M A +G + ++V Y LID +C L A
Sbjct: 266 PNNATYTALIHGLCQKGSFLEAAVLLNEMVA-IGCELDVVIYNSLIDGLCKMGELDFARE 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G PD F Y ++++G
Sbjct: 325 MQILMVEKGVAPDVFTYTSLIQG 347
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ C + + +D+M GI PN VTYT LI +C+ + A+
Sbjct: 159 PTVVTYTTLIHGFCTAGRVDAAMDILDEMEHR-GITPNTVTYTALIQGLCDCGEVERAIL 217
Query: 68 LVSALSDSGFK--PDCFVYNTIMKG 90
++ + G + P+ Y ++ G
Sbjct: 218 VLKEMKLRGNECCPNVVTYTQLIHG 242
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-IKPNLVTYTILIDNVCNTKNL 62
+ + P+ TY L++ LC C + + +M+ PN+VTYT LI +C
Sbjct: 190 RGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLF 249
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
M + + SG P+ Y ++ G
Sbjct: 250 EMGMEFLDEMIISGCFPNNATYTALIHG 277
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK L + + +M +G++PN+ TY +++ +C + N+ EA++
Sbjct: 877 PNVVTYTTLIDGLCKEGDLDSANELLHEM-WKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 935
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV +G D Y T+M Y
Sbjct: 936 LVGEFEAAGLNADTVTYTTLMDAY 959
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PDI T+ L+ CK + + + M + G PN+VTYT LID +C
Sbjct: 835 MLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQA-GCSPNVVTYTTLIDGLCKEG 893
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A L+ + G +P+ F YN+I+ G
Sbjct: 894 DLDSANELLHEMWKIGLQPNIFTYNSIVNG 923
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+IFTYN +V LCK ++ V + A+ G+ + VTYT L+D C + + +A
Sbjct: 910 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCKSGEMDKA 968
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G +P +N +M G+
Sbjct: 969 QEILTEMLGKGLQPTIVTFNVLMNGF 994
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +Y+ ++ C+ L V+ +++M+ G+KPN TY +I +C L
Sbjct: 697 LKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQK-GLKPNSYTYGSIIGLLCRICKL 755
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA S + G PD VY T++ G+
Sbjct: 756 AEAEEAFSEMIGQGILPDTIVYTTLVDGF 784
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD Y LV CK + F +M S I P+++TYT +I C
Sbjct: 765 MIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMH-SRDITPDVLTYTAIISGFCQIG 823
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ EA +L + G +PD + +M GY
Sbjct: 824 DMVEAGKLFHEMLCRGLEPDIITFTELMNGY 854
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ T+N LVK C +L M S G++P+ TY L+ CN +
Sbjct: 1010 MLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDM-CSRGVEPDGKTYENLVKGHCNAR 1068
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++EA L + GF Y+ ++KG+
Sbjct: 1069 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 1099
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+G+ N+ +Y I+I VC + EA L+ + G+ PD Y+T++ GY
Sbjct: 663 VGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGY 714
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PD TY+ L+ LC L +M A I PNLVTY IL+D +C + L
Sbjct: 303 QELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQI-PNLVTYRILLDYLCKNRYLA 361
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ A+ S PD V N + G
Sbjct: 362 EAMALLKAIEGSNLDPDIQVNNIAIDG 388
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++F YN ++ LCK R +T +N +M + GI P++ TY LI +CN
Sbjct: 159 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEM-VTKGISPDIFTYNSLIHALCNLC 217
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ L++ + DS PD +NT++
Sbjct: 218 EWKHVATLLNEMVDSKIMPDVVSFNTVVDA 247
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ ++N +V LCK +T ++ VD+M G PN+++Y LI+ C +
Sbjct: 229 MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQ 288
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + PD Y+T++ G
Sbjct: 289 RIDKAMYLFGEMCRQELIPDTVTYSTLIHG 318
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC--NTKNL 62
Q PP +N L+ + K + +T+ + QM S GI PN+ T ILI++ C N +
Sbjct: 56 QPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD-SFGIPPNIYTLHILINSFCHLNRGKI 114
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + GF+PD Y T++ G
Sbjct: 115 GEALHLFDKMIGEGFRPDVVTYGTLING 142
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY L+ LCK + + + M +PN+ Y +ID++C +
Sbjct: 124 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSM-VQKNCQPNVFAYNTIIDSLCKDR 182
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L S + G PD F YN+++
Sbjct: 183 QVTEAFNLFSEMVTKGISPDIFTYNSLIHA 212
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PDIFTYN L+ LC V +++M S I P++V++ ++D +C
Sbjct: 194 MVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDS-KIMPDVVSFNTVVDALCKEG 252
Query: 61 NLREAMRLVSAL-SDSGFKPDCFVYNTIMKGY 91
+ EA +V + G P+ YNT++ GY
Sbjct: 253 KVTEAHDVVDKMIQRGGCMPNVISYNTLINGY 284
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCR--SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+PP+I+T + L+ C + + D+M G +P++VTY LI+ +C N
Sbjct: 92 IPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGE-GFRPDVVTYGTLINGLCKVGNTS 150
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+RL+ ++ +P+ F YNTI+
Sbjct: 151 AAIRLLGSMVQKNCQPNVFAYNTII 175
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI N + +C+ L + + +S G++P++ TY+I+I+ +C L EA
Sbjct: 375 LDPDIQVNNIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEA 433
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + ++G + +YNTI +G+
Sbjct: 434 SKLFREMDENGCTLNGCIYNTITRGF 459
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++++Y LV CK + YN +++M A G+KPN V + LI C +
Sbjct: 418 KGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLISAFCKEHRIP 476
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + + G KPD + +N+++ G
Sbjct: 477 EAVEIFREMPRKGCKPDVYTFNSLISG 503
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++P PD++T+N L+ LC+ + + M S G+ N VTY LI+
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM-ISEGVVANTVTYNTLINAF 539
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA +LV+ + G D YN+++KG
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKG 573
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ K + + MR G KPN+ +YTIL+D C + EA
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK-GCKPNVYSYTILVDGFCKLGKIDEAYN 445
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ +S G KP+ +N ++ +
Sbjct: 446 VLNEMSADGLKPNTVGFNCLISAF 469
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P D TYN L+K LC+ + + ++M G P+ ++ ILI+ +C +
Sbjct: 555 MVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD-GHAPSNISCNILINGLCRSG 613
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + G PD +N+++ G
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLING 643
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++PP +FT+ ++K C + + + + M G PN V Y LI ++
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKH-GCVPNSVIYQTLIHSLSKCN 266
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L+ + G PD +N ++ G
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILG 296
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+ LC+ + F +M G P++VT+ LI+ +C + + +
Sbjct: 597 PSNISCNILINGLCRSGMVEEAVEFQKEM-VLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ L G PD +NT+M
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLM 676
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ L KC + +++M +G P+ T+ +I +C + EA +
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFL-MGCVPDAETFNDVILGLCKFDRINEAAK 308
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V+ + GF PD Y +M G
Sbjct: 309 MVNRMLIRGFAPDDITYGYLMNG 331
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI T+N L+ LC+ + +++A GI P+ VT+ L+ +C
Sbjct: 625 MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE-GIPPDTVTFNTLMSWLCKGG 683
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +A L+ + GF P+ ++ +++
Sbjct: 684 FVYDACLLLDEGIEDGFVPNHRTWSILLQ 712
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD TY +L+ LCK + + ++ KP +V + LI
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP-----KPEIVIFNTLIHGFVTHG 367
Query: 61 NLREAMRLVSALSDS-GFKPDCFVYNTIMKGY 91
L +A ++S + S G PD YN+++ GY
Sbjct: 368 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY 399
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TYN L+ CLC + V+ ++ S + +++TY I+I +C T L+EA
Sbjct: 390 VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS-EMDVDIITYNIIIQGLCRTDKLKEA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +L+ G KPD Y T++ G
Sbjct: 449 WCLFRSLTRKGVKPDAIAYITMISG 473
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++FTYN L+ C L D M S G P++VTY LI C +K
Sbjct: 280 MIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM-VSKGCFPDVVTYNTLITGFCKSK 338
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L ++ G D F YNT++ GY
Sbjct: 339 RVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ ++ L D FTYN L+ C+ L ++M G+ P++VTY IL+D +CN
Sbjct: 350 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM-VDCGVSPDIVTYNILLDCLCNNG 408
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +V L S D YN I++G
Sbjct: 409 KIEKALVMVEDLQKSEMDVDIITYNIIIQG 438
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + +M LG +P++VT L++ C +EA
Sbjct: 110 ISHDLYSFTILIHCFCRCSRLSLALALLGKM-MKLGFRPSIVTLGSLLNGFCQGNRFQEA 168
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV ++ GF P+ +YNT++ G
Sbjct: 169 VSLVDSMDGFGFVPNVVIYNTVING 193
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI TYN +++ LC+ L + + G+KP+ + Y +I +C RE
Sbjct: 424 EMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRK-GVKPDAIAYITMISGLCRKGLQRE 482
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + + GF P +Y+ ++ +
Sbjct: 483 ADKLCRRMKEDGFMPSERIYDETLRDH 509
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D TYN L+ L T + M I PN++ +T LID NL
Sbjct: 213 KGIRADAVTYNTLISGLSNSGRWTDAARLLRDM-VKRKIDPNVIFFTALIDTFVKEGNLL 271
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + P+ F YN+++ G+
Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGF 299
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ LCK R L M GI+ + VTY LI + N+ +A R
Sbjct: 182 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKK-GIRADAVTYNTLISGLSNSGRWTDAAR 240
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + P+ + ++
Sbjct: 241 LLRDMVKRKIDPNVIFFTALI 261
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ +N LVK CK + + + V++M+ S PNL+TY+ LI+ +C + L+EA
Sbjct: 196 LEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEA 255
Query: 66 MRLVSAL-SDSGFKPDCFVYNTIMKGY 91
+ L + S PD YN ++ G+
Sbjct: 256 IELFEEMVSKDQILPDALTYNALINGF 282
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F Y+ L+ CK L D+M+ SLG+KP+ V YT LI+ C + EAM
Sbjct: 305 PNVFNYSALMNGFCKEGRLEEAKEVFDEMK-SLGLKPDTVGYTTLINFFCRAGRVDEAME 363
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + ++ + D +N I+ G
Sbjct: 364 LLKDMRENKCRADTVTFNVILGG 386
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC L ++M + I P+ +TY LI+ C+ + + A++
Sbjct: 234 PNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALK 293
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G P+ F Y+ +M G+
Sbjct: 294 IMEFMKKNGCNPNVFNYSALMNGF 317
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ PD TYN L+ C + ++ M+ + G PN+ Y+ L++ C L E
Sbjct: 267 QILPDALTYNALINGFCHGEKVDRALKIMEFMKKN-GCNPNVFNYSALMNGFCKEGRLEE 325
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A + + G KPD Y T++
Sbjct: 326 AKEVFDEMKSLGLKPDTVGYTTLI 349
>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN L+ CK + N ++M I PN+VTY LID +C + + A++
Sbjct: 287 PDIQSYNILINGFCKIKMTDAAMNLFEEMHCR-KIIPNVVTYNSLIDGLCKSGKISYALK 345
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
LV + D G PD Y++++
Sbjct: 346 LVDEMHDRGQPPDIITYSSLL 366
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P++ TYN L+ LCK ++ VD+M G P+++TY+ L+D +C
Sbjct: 318 RKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMH-DRGQPPDIITYSSLLDALCKNHPGD 376
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ L D G +P+ + Y ++ G
Sbjct: 377 KAIALLTKLKDQGLQPNMYTYTILING 403
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPDI TY+ L+ LCK + +++ G++PN+ TYTILI+ +C +A
Sbjct: 356 PPDIITYSSLLDALCKNHPGDKAIALLTKLKDQ-GLQPNMYTYTILINGLCKGGRPEDAQ 414
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+ L G+ + Y T+M
Sbjct: 415 NIFEDLLVKGYNINVNTY-TVM 435
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+++TY L+ LCK N + + G N+ TYT++I CN
Sbjct: 388 QGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVK-GYNINVNTYTVMIHVFCNNGMFG 446
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA+ ++S + ++G P+ Y I++
Sbjct: 447 EALAMLSKMEENGCIPNAVTYEIIIR 472
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 17 VKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
V CK + N F M+ G KPN+VTY+ L+D C K + +A + + ++
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKK--GFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQG 283
Query: 76 GFKPDCFVYNTIMKGY 91
G PD YN ++ G+
Sbjct: 284 GVNPDIQSYNILINGF 299
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ TY+ L+ C + + + + M A G+ P++ +Y ILI+ C K
Sbjct: 245 MMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNM-AQGGVNPDIQSYNILINGFCKIK 303
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM L + P+ YN+++ G
Sbjct: 304 MTDAAMNLFEEMHCRKIIPNVVTYNSLIDG 333
>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 524
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TY+ L+ LCK ++ + +DQM A G +++TYT + +C +
Sbjct: 339 KGITPDKVTYSSLIDGLCKSERISHAWELLDQMHAR-GQPADVITYTSFLHALCKNHQVD 397
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ LV + D G +P+ YN ++ G
Sbjct: 398 KAVALVKKIKDQGIQPNINTYNILIDG 424
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TY + LCK + V +++ GI+PN+ TY ILID +C A
Sbjct: 377 PADVITYTSFLHALCKNHQVDKAVALVKKIKDQ-GIQPNINTYNILIDGLCKEGRFENAQ 435
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ L G+K + YN ++ G
Sbjct: 436 VIFQDLLIKGYKVTVWTYNIMING 459
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+I TYN L+ LCK + G K + TY I+I+ +C
Sbjct: 409 QGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIK-GYKVTVWTYNIMINGLCLEGLFD 467
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ + D+G PD Y TI++
Sbjct: 468 EAMTLLEKMEDNGCTPDVVTYETIIRA 494
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG----------------IKP 44
++ + PD+ T+N LV LCK S N + M + + P
Sbjct: 249 MVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTP 308
Query: 45 NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +YTI+I +C K + EA+ L + + G PD Y++++ G
Sbjct: 309 DVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDG 354
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T L+K LC + +F D + A G + N V+Y ILI+ +C R A++
Sbjct: 116 PDTITLTTLIKGLCLNGKVHEALHFHDHVIAR-GFRLNEVSYGILINGLCKMGETRAALQ 174
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + + +Y+TI+
Sbjct: 175 VLRKIDGKLVNTNVVMYSTII 195
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + P I T+N ++ C C + ++ + ++ +G P+ +T T LI +C
Sbjct: 74 LQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKI-LKMGYHPDTITLTTLIKGLCLNG 132
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + GF+ + Y ++ G
Sbjct: 133 KVHEALHFHDHVIARGFRLNEVSYGILING 162
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ LCK + ++ L + N+V Y+ +ID++C K + EA L S
Sbjct: 155 SYGILINGLCKMGETRAALQVLRKIDGKL-VNTNVVMYSTIIDSLCKEKLVTEAYELYSQ 213
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ PD ++ ++ G+
Sbjct: 214 MIVKKVSPDVVTFSALIYGF 233
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ Y+ ++ LCK + +T Y QM + P++VT++ LI C +
Sbjct: 182 KLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVK-KVSPDVVTFSALIYGFCMVGQFK 240
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA L + + PD +N ++
Sbjct: 241 EAFGLFHEMVLTNINPDVCTFNILV 265
>gi|255660958|gb|ACU25648.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 348
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKG 243
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRALYV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
Length = 647
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN V +CKC ++ V M A+ IKPN+VTY+ L+D + EA++L
Sbjct: 128 DIYTYNTFVDAICKCGNMELATQVVLDMEAN-NIKPNVVTYSTLMDGFSKLEKYDEALKL 186
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ G + D YNT++ Y
Sbjct: 187 REKMKSLGIQLDRVCYNTLLAIY 209
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD T+N L+ + L D+M LG ++ TY +D +C N+ A
Sbjct: 90 LCPDRKTFNSLLAACSRAGHLEDARTVFDEM-IHLGSGRDIYTYNTFVDAICKCGNMELA 148
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++V + + KP+ Y+T+M G+
Sbjct: 149 TQVVLDMEANNIKPNVVTYSTLMDGF 174
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ L+ K +N + S G+K ++V ++ ID + + A+
Sbjct: 267 PSVLTYSTLIDIYSKAGMHGDAFNVYLDFKES-GLKADVVLFSSFIDTLAKNGLVECALS 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G KP+ YNTI+ +
Sbjct: 326 LLDEMIKMGIKPNVVTYNTIIDAF 349
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+ K L V V MRA G+ P+++TY+ LID +A +
Sbjct: 233 DTVTYNSLINGYGKQGRLDMVAFLVQDMRAQ-GVAPSVLTYSTLIDIYSKAGMHGDAFNV 291
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+SG K D ++++ +
Sbjct: 292 YLDFKESGLKADVVLFSSFI 311
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1 LIFKQ--LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
L FK+ L D+ ++ + L K + + +D+M +GIKPN+VTY +ID
Sbjct: 293 LDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEM-IKMGIKPNVVTYNTIIDAFGK 351
Query: 59 TKNLRE 64
+K L E
Sbjct: 352 SKILTE 357
>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
Length = 849
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ ++N L+K CK + YNF+ +MR + G+ P+ V+Y +LI+ C ++ +A+
Sbjct: 628 PDVVSHNILIKGYCKAGKVNEAYNFLHKMRVA-GLVPSAVSYNLLINEWCKNGDIDKAIL 686
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S +++ KP Y T++ G
Sbjct: 687 CLSQMNEENKKPTIISYTTLING 709
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P FTYN + CLC+ + +MR G +P + T+L+ +C E
Sbjct: 520 RLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGH-GHEPWIKHSTLLVKQLCKNGRAIE 578
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++ + GF PD Y+ M G
Sbjct: 579 ASNFLADMVCEGFLPDIVSYSAAMDG 604
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I LVK LCK NF+ M G P++V+Y+ +D + L A+
Sbjct: 558 PWIKHSTLLVKQLCKNGRAIEASNFLADMVCE-GFLPDIVSYSAAMDGLVKINKLDRALE 616
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G +PD +N ++KGY
Sbjct: 617 LFQDICTRGCRPDVVSHNILIKGY 640
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRS---LTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
FK+L P+ ++N ++ L K S + + M LG + + + Y LID +C +
Sbjct: 445 FKKLLPNTASFNIVIHGLLKTTSKLDQDAALSLFEDM-VQLGCERDQLLYNNLIDALCKS 503
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTI 87
L+E+ +L+ + S +P F YN+I
Sbjct: 504 DRLKESYKLLRDMEQSRLQPTHFTYNSI 531
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +Y+ + L K L + + G +P++V++ ILI C + EA
Sbjct: 593 PDIVSYSAAMDGLVKINKLDRALELFQDI-CTRGCRPDVVSHNILIKGYCKAGKVNEAYN 651
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G P YN ++ +
Sbjct: 652 FLHKMRVAGLVPSAVSYNLLINEW 675
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ LCK R + +F ++ GI+PN+VTYT L++ +CN+ +A R
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEI-GRKGIRPNVVTYTALVNGLCNSGRWNDAAR 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + P+ Y+ ++ +
Sbjct: 247 LLRDMIKRKITPNVITYSALLDAF 270
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI+TYN L+ LC L + M+ S + ++VTYT +I +C T + +A
Sbjct: 396 VSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKS-EMDLDIVTYTTVIQGMCKTGKVEDA 454
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +LS G KPD Y T+M G
Sbjct: 455 WGLFCSLSLKGLKPDIVTYTTMMSG 479
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI TY+ L+ LC + D M S G P++V+Y LI+ C K
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM-VSKGCFPDVVSYNTLINGFCKAK 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L +S G + YNT+++G+
Sbjct: 345 RVEDGMKLFRKMSQRGLVNNTVTYNTLIQGF 375
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++T+N ++ C C C ++ + + +M LG +P+ VT L++ C + +A+ L
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSVLGKM-LKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V + + G++PD YN I+
Sbjct: 178 VDKMVEIGYRPDIVAYNAII 197
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T LV C+ ++ + VD+M +G +P++V Y +ID++C T+ + +A+
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIGYRPDIVAYNAIIDSLCKTRRVNDAL 210
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ G +P+ Y ++ G
Sbjct: 211 DFFKEIGRKGIRPNVVTYTALVNG 234
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN L+ CK + + +M + G+ N VTY LI ++ +A
Sbjct: 328 PDVVSYNTLINGFCKAKRVEDGMKLFRKM-SQRGLVNNTVTYNTLIQGFFQVGDVDKAQE 386
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
S + G PD + YN ++ G
Sbjct: 387 FFSQMDSFGVSPDIWTYNILLGG 409
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ + + F QM S G+ P++ TY IL+ +C+ L
Sbjct: 359 RGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQM-DSFGVSPDIWTYNILLGGLCDNGLLE 417
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + S D Y T+++G
Sbjct: 418 KALVIFEDMQKSEMDLDIVTYTTVIQG 444
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY LV LC + M I PN++TY+ L+D +
Sbjct: 219 KGIRPNVVTYTALVNGLCNSGRWNDAARLLRDM-IKRKITPNVITYSALLDAFVKNGKVL 277
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + PD Y++++ G
Sbjct: 278 EAKEIFEEMVRMSIDPDIVTYSSLING 304
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI TY +++ +CK + + + G+KP++VTYT ++ +C E
Sbjct: 430 EMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLQHE 488
Query: 65 AMRLVSALSDSGF 77
L + + G
Sbjct: 489 VEALYTKMKQEGL 501
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + + PD YN + CLC +F+ +MR ++G+KP+ TY +I + C
Sbjct: 545 LMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMR-NMGLKPDQSTYNTMIVSHCRKG 603
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++L+ + S KP+ YNT++ G
Sbjct: 604 ETAKALKLLHEMKMSSIKPNLITYNTLVAG 633
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LP D+ YN LV C+ + +D M+ + G+ PN+ TYT I C TK + EA
Sbjct: 200 LPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEA-GVDPNVATYTPFIVYYCRTKGVEEA 258
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + +G D + ++ G
Sbjct: 259 FDLYEGMVRNGVLLDVVTLSALVAG 283
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + +M+ S IKPNL+TY L+ + T + +A
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMS-SIKPNLITYNTLVAGLFGTGAVEKA 643
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ + +GF P + +++
Sbjct: 644 KYLLNEMVSAGFSPSSLTHRRVLQA 668
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKPNLVTYTILIDNVCNTKNLREAM 66
D+ TY L+ L K V D +R +L + PN VTYT+LID +C N+ EA
Sbjct: 343 DLVTYTALMDWLGKQGKTDEVK---DTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAE 399
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + P+ +++++ G+
Sbjct: 400 QVLLEMEEKSISPNVVTFSSVINGF 424
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+I T+N L+ L + + +M S G++PN +TY IL
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKS-GLEPNNLTYDILATGHGKQS 813
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N EAMRL + GF P YN ++ +
Sbjct: 814 NKVEAMRLYCEMVGKGFVPKVSTYNALISDF 844
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY L+ LCK ++ + +M I PN+VT++ +I+ L +A
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK-SISPNVVTFSSVINGFVKRGLLDKA 433
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ Y T++ G+
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGF 459
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ T + LV LC+ + Y +M +G PN VTY LID++ +E + L
Sbjct: 273 DVVTLSALVAGLCRDGRFSEAYALFREMD-KVGAAPNHVTYCTLIDSLAKAGRGKELLSL 331
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G D Y +M
Sbjct: 332 LGEMVSRGVVMDLVTYTALM 351
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 6 LPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L DI YN L++ LC R T V +++M S GI P+ +T+ LI C + +L
Sbjct: 690 LHADITVYNTLLQVLCYHGMTRKATVV---LEEMLGS-GIAPDTITFNALILGHCKSSHL 745
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + P+ +NT++ G
Sbjct: 746 DNAFATYAQMLHQNISPNIATFNTLLGG 773
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + TYN L+ K +T M+ G+ P TY IL+ +
Sbjct: 825 MVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKR-GVHPTSCTYDILVSGWSRIR 883
Query: 61 NLREAMRLVSALSDSGFKP 79
N E + + + + GF P
Sbjct: 884 NGTEVKKCLKDMKEKGFSP 902
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ T++ ++ K R L +M GI PN+VTY LID +
Sbjct: 408 KSISPNVVTFSSVINGFVK-RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQD 466
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + G K + F+ ++++ G
Sbjct: 467 AALEVYHDMLCEGVKVNKFIVDSLVNG 493
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN +V C F+ +MR+ G++P++VTY L+D +C EA +
Sbjct: 156 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 214
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 215 IFDSMTKRGLKPEITTYGTLLQGY 238
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TY+ L+ C + + M S+G+KP+ VTY+ LI+ C +++A
Sbjct: 399 VKPDIITYSTLIDGYCLAGKMDEATKLLASM-VSVGMKPDCVTYSTLINGYCKISRMKDA 457
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + SG PD YN I++G
Sbjct: 458 LVLFREMESSGVSPDIITYNIILQG 482
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N ++ CK + D M +G+KP+++TY+ LID C + EA +L++++
Sbjct: 371 FNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 429
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G KPDC Y+T++ GY
Sbjct: 430 VSVGMKPDCVTYSTLINGY 448
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y+ ++ K L Y+ ++M I PN+VTY +I +C + + +AM
Sbjct: 85 PPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQR-ISPNVVTYNSIIAALCKAQTVDKAM 143
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + SG PDC YN+I+ G+
Sbjct: 144 EVLTTMVKSGVMPDCMTYNSIVHGF 168
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TYN ++ LCK +++ + M S G+ P+ +TY ++ C++
Sbjct: 114 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-GVMPDCMTYNSIVHGFCSSG 172
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 173 QPKEAIVFLKKMRSDGVEPDVVTYNSLM 200
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TY+ L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 434 MKPDCVTYSTLINGYCKISRMKDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAA 492
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ SG + + YN I+ G
Sbjct: 493 KELYVGITKSGRQLELSTYNIILHG 517
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P YN L+ LC C + +M GI N + + +ID+ C
Sbjct: 324 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM-LDRGICLNTIFFNSIIDSHCKEG 382
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KPD Y+T++ GY
Sbjct: 383 RVIESEKLFDLMVRIGVKPDIITYSTLIDGY 413
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + ++ LV K + +MR G+ PN VTY +I +C +
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSG 312
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM + D G P VYN+++ G
Sbjct: 313 RVEDAMLYFEQMIDEGLSPGNIVYNSLIHG 342
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ LCK T D M G+KP + TY L+ L E
Sbjct: 189 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEM 247
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 248 HGLLDLMVRNGIHPNHYVFSILVCAY 273
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI PN ++IL+ + +
Sbjct: 222 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVE 280
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM + S + G P+ Y ++
Sbjct: 281 EAMLVFSKMRQQGLNPNAVTYGAVI 305
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFK--PDCFVYNTIMKGY 91
P++ +Y IL++ +C+ +EA+ L+ ++D G PD Y+T++ G+
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGF 98
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY ++ LCK + + +QM G+ P + Y LI +C
Sbjct: 292 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWE 350
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L+ + D G + +N+I+ +
Sbjct: 351 RAEELILEMLDRGICLNTIFFNSIIDSH 378
>gi|297842513|ref|XP_002889138.1| hypothetical protein ARALYDRAFT_476899 [Arabidopsis lyrata subsp.
lyrata]
gi|297334979|gb|EFH65397.1| hypothetical protein ARALYDRAFT_476899 [Arabidopsis lyrata subsp.
lyrata]
Length = 382
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LC + N QM S GIKP++ YT+LI + C+ L EA
Sbjct: 198 PNVRTYTVLIDALCGSGKKSEALNLFKQMSES-GIKPDVYMYTVLIQSFCSGDTLDEASG 256
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + ++G P+ YN ++KG+
Sbjct: 257 LLDHMFENGLMPNFITYNALIKGF 280
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+ PD++ Y L++ C +L +D M + G+ PN +TY LI
Sbjct: 222 LFKQMSESGIKPDVYMYTVLIQSFCSGDTLDEASGLLDHMFEN-GLMPNFITYNALIKGF 280
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C KN+ +AM L+S + + PD YNT++ G
Sbjct: 281 CK-KNVHKAMGLLSKMLEQNLVPDLITYNTLIAG 313
>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PDIFTY LV LC V ++QM S I P++V ++ ++D +C
Sbjct: 211 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNS-KILPDVVIFSTVVDALCKEG 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +PD Y T+M G+
Sbjct: 270 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGH 300
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ ++ +V LCK +T + VD M G++P++VTYT L+D C
Sbjct: 246 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM-IQRGVEPDVVTYTTLMDGHCLQS 304
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+++ + GF PD Y T++
Sbjct: 305 EMDEAVKVFDMMVRKGFAPDVISYTTLI 332
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+++T N L+ C + ++ + ++ LG +P+ T+T LI +C + EA
Sbjct: 76 VPPNVYTLNILINSFCHLNRVGFAFSVLAKI-LKLGHQPDPTTFTTLIRGLCVEGKIGEA 134
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + D GF+P+ Y T++ G
Sbjct: 135 LHLFDKMIDEGFQPNVVTYGTLING 159
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK + + + M +P++V YT +ID++C +
Sbjct: 141 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG-NCQPDVVIYTSIIDSLCKDR 199
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L S + G PD F Y +++
Sbjct: 200 QVTEAFNLFSQMVGQGISPDIFTYTSLVHA 229
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L++ LC + + D+M G +PN+VTY LI+ +C N A+R
Sbjct: 113 PDPTTFTTLIRGLCVEGKIGEALHLFDKM-IDEGFQPNVVTYGTLINGLCKVGNTSAAIR 171
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +PD +Y +I+
Sbjct: 172 LLRSMEQGNCQPDVVIYTSII 192
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PP I + L+ + K + +TV + QM S G+ PN+ T ILI++ C+
Sbjct: 36 LLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMD-SFGVPPNVYTLNILINSFCHLN 94
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +++ + G +PD + T+++G
Sbjct: 95 RVGFAFSVLAKILKLGHQPDPTTFTTLIRG 124
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV C+ L V MR KPNLVT+ +++ +C + A +
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 244
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD YNT++ GY
Sbjct: 245 VFDEMVREGLAPDVVSYNTLLSGY 268
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+ T+ L+ CK +L V QMR G++ N VT+T LID C L
Sbjct: 287 RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER-GLRMNEVTFTALIDGFCKKGFLD 345
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ V + G +P YN ++ GY
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALINGY 373
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD+ TY+ ++ CK +L + + +M G+ P+ +TY+ LI +C K L
Sbjct: 392 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKK-GVLPDAITYSSLIRGLCEEKRLN 450
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + G +PD F Y T++ G+
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGH 478
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN LV+ LC L V MR + G PN VTY L+ C L A R
Sbjct: 150 PNVYTYNILVRALCARGRLEEAVGVVGDMRGA-GCAPNAVTYNTLVAAFCRAGELDGAER 208
Query: 68 LVSALSDSG-FKPDCFVYNTIMKG 90
+VS + + G KP+ +N+++ G
Sbjct: 209 VVSLMREEGNAKPNLVTFNSMVNG 232
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ LC+ + L + M LG++P+ TYT LID C
Sbjct: 424 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM-LQLGVQPDEFTYTTLIDGHCKEG 482
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +A+ L + G PD Y+ ++ G
Sbjct: 483 NVEKALSLHDEMIRKGVLPDVVTYSVLING 512
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + YN L+ CK + + +M A +KP++VTY+ +I C NL A
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKR-VKPDVVTYSTIISGYCKVGNLDSA 417
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + G PD Y+++++G
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRG 442
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ +YN L+ CK L +M G+ P++VT+T LI C
Sbjct: 249 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAG 307
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL +A+ LV+ + + G + + + ++ G+
Sbjct: 308 NLEQAVALVAQMRERGLRMNEVTFTALIDGF 338
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N +V LCK + D+M G+ P++V+Y L+ C L E++
Sbjct: 221 PNLVTFNSMVNGLCKAGRMEGARKVFDEM-VREGLAPDVVSYNTLLSGYCKVGCLHESLA 279
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ S ++ G PD + +++
Sbjct: 280 VFSEMTQRGLVPDVVTFTSLI 300
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+ L+ CK L V++MR GI+P++V Y LI+ C + A L+
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEMR-KCGIQPSVVCYNALINGYCKLGRMDLARELIRE 388
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ KPD Y+TI+ GY
Sbjct: 389 MEAKRVKPDVVTYSTIISGY 408
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY L+ CK ++ + D+M G+ P++VTY++LI+ + + +EA R
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEM-IRKGVLPDVVTYSVLINGLSKSARTKEAHR 524
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ L PD Y+ +M
Sbjct: 525 LLFKLYHEDPVPDNIKYDALM 545
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ L SL + F+ M G+ PN+ TY IL+ +C L EA+
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRH-GVAPNVYTYNILVRALCARGRLEEAVG 173
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + +G P+ YNT++ +
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAF 197
>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 376
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + +A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLNPGVITYSMLMKGLCLDHKVEKALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLNPGVITYSMLMKG 243
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ + G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVL-DAFAYSAMINGLCKEANLDRAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNAHVYNTLING 173
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ L N ++M+ G +PN+ TYT+LID +C + EA +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEK-GCEPNVHTYTVLIDGLCKENKMDEARK 355
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++S +S+ G P YN ++ GY
Sbjct: 356 MLSEMSEKGLIPSVVTYNALIDGY 379
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TYN L++ LCK + + + V +M ++G+KP +VTYTILI + A++
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKM-LTMGVKPTVVTYTILIGEMLKDGAFDHALK 600
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G++PD Y + Y
Sbjct: 601 VFNHMVSLGYQPDVCTYTAFLHAY 624
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P + TYN L+ CK L + Y + M + G+ P+ TY++ ID +C
Sbjct: 430 MLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNEN-GLVPDQWTYSVFIDTLCKEG 488
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L ++ G K + +Y ++ GY
Sbjct: 489 RVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LCK R + +++M + P+L+TY LI C +L A R
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLER-KLSPSLITYNSLIHGQCKVNDLESAYR 460
Query: 68 LVSALSDSGFKPDCFVYN 85
L+S ++++G PD + Y+
Sbjct: 461 LLSLMNENGLVPDQWTYS 478
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY+ + LCK + D ++A G+K N V YT LID C + A
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAK-GVKANEVIYTALIDGYCKVGKIDVA 528
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + + P+ + YN +++G
Sbjct: 529 YSLLERMLNDACLPNSYTYNVLIEG 553
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P + TYN L+ CK + + +D M ++ PN TY LI +C + +
Sbjct: 363 KGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN-SCGPNTRTYNELICGLCKKRKVH 421
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L++ + + P YN+++ G
Sbjct: 422 KAMALLNKMLERKLSPSLITYNSLIHG 448
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY L+ LCK + + +M G+ P++VTY LID C +
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK-GLIPSVVTYNALIDGYCKEGMID 386
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A ++ + + P+ YN ++ G
Sbjct: 387 DAFEILDLMESNSCGPNTRTYNELICG 413
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY + L V + + +M GI P+LVTYT+LID A
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEE-GILPDLVTYTVLIDGYARLGLTHRAFD 670
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + D+G KP ++ + ++K
Sbjct: 671 FLKCMVDTGCKPSLYIVSILIK 692
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ + K + + M SLG +P++ TYT + + L E
Sbjct: 577 PTVVTYTILIGEMLKDGAFDHALKVFNHM-VSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ +++ G PD Y ++ GY
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGY 659
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ C+ + + Y M G + N V+YT LI +C + EA
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQK-GCQRNEVSYTNLIHGLCEAGRINEA 283
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L + +++ P Y ++
Sbjct: 284 LKLFADMTEDNCCPTVRTYTVLI 306
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I PN+ T+ +++ C N+ EA S + +G PD F Y +++ G+
Sbjct: 190 ISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGH 239
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ Y L+ C+ L V M+ G+ P+ Y L+D C EA+RL
Sbjct: 736 DVSIYGALIAGFCQQERLEEAQGLVHHMKER-GMSPSEDIYNSLLDCCCKLGVYAEAVRL 794
Query: 69 VSALSDSGFKP 79
V A+ ++G P
Sbjct: 795 VDAMVENGLLP 805
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ Q+ P+I+T+N +V CK ++ + ++ G+ P+ TYT LI C K
Sbjct: 185 LLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKI-VQAGLHPDTFTYTSLILGHCRNK 243
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + G + + Y ++ G
Sbjct: 244 GVDNAYEVFLIMPQKGCQRNEVSYTNLIHG 273
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV C+ L V MR KPNLVT+ +++ +C + A +
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 244
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD YNT++ GY
Sbjct: 245 VFDEMVREGLAPDVVSYNTLLSGY 268
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+ T+ L+ CK +L V QMR G++ N VT+T LID C L
Sbjct: 287 RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER-GLRMNEVTFTALIDGFCKKGFLD 345
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ V + G +P YN ++ GY
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALINGY 373
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD+ TY+ ++ CK +L + + +M G+ P+ +TY+ LI +C K L
Sbjct: 392 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKK-GVLPDAITYSSLIRGLCEEKRLN 450
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + G +PD F Y T++ G+
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGH 478
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN LV+ LC L V MR + G PN VTY L+ C L A R
Sbjct: 150 PNVYTYNILVRALCARGRLEEAVGVVGDMRGA-GCAPNAVTYNTLVAAFCRAGELDGAER 208
Query: 68 LVSALSDSG-FKPDCFVYNTIMKG 90
+VS + + G KP+ +N+++ G
Sbjct: 209 VVSLMREEGNAKPNLVTFNSMVNG 232
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ LC+ + L + M LG++P+ TYT LID C
Sbjct: 424 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM-LQLGVQPDEFTYTTLIDGHCKEG 482
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +A+ L + G PD Y+ ++ G
Sbjct: 483 NVEKALSLHDEMIRKGVLPDVVTYSVLING 512
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + YN L+ CK + + +M A +KP++VTY+ +I C NL A
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKR-VKPDVVTYSTIISGYCKVGNLDSA 417
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + G PD Y+++++G
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRG 442
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ +YN L+ CK L +M G+ P++VT+T LI C
Sbjct: 249 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAG 307
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL +A+ LV+ + + G + + + ++ G+
Sbjct: 308 NLEQAVALVAQMRERGLRMNEVTFTALIDGF 338
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N +V LCK + D+M G+ P++V+Y L+ C L E++
Sbjct: 221 PNLVTFNSMVNGLCKAGRMEGARKVFDEM-VREGLAPDVVSYNTLLSGYCKVGCLHESLA 279
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ S ++ G PD + +++
Sbjct: 280 VFSEMTQRGLVPDVVTFTSLI 300
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+ L+ CK L V++MR GI+P++V Y LI+ C + A L+
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEMR-KCGIQPSVVCYNALINGYCKLGRMDLARELIRE 388
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ KPD Y+TI+ GY
Sbjct: 389 MEAKRVKPDVVTYSTIISGY 408
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY L+ CK ++ + D+M G+ P++VTY++LI+ + + +EA R
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEM-IRKGVLPDVVTYSVLINGLSKSARTKEAHR 524
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ L PD Y+ +M
Sbjct: 525 LLFKLYHEDPVPDNIKYDALM 545
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ L SL + F+ M G+ PN+ TY IL+ +C L EA+
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRH-GVAPNVYTYNILVRALCARGRLEEAVG 173
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + +G P+ YNT++ +
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAF 197
>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
Length = 601
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ + + LCK + D M G++PN+VTY +LI+ +C ++REA+
Sbjct: 218 PDVIMFTGFIDDLCKKGRIGKAVKVKDIM-VQRGLEPNVVTYNVLINCLCKEGSVREALA 276
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + D G PD YNT++ G
Sbjct: 277 LRNEMDDKGVAPDVVTYNTLIAG 299
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N ++ LCK + + V +M A G NLVTY LI + AM
Sbjct: 325 PDVVTFNSVIHGLCKIGRMRQAIS-VREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMN 383
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S L SG +PD F Y+ ++ G+
Sbjct: 384 LMSELISSGLEPDSFTYSILINGF 407
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y +++ LC R + M+AS G++ ++VTY LI +C+ L A+
Sbjct: 113 PNAVSYTMVMRGLCASRRTDEAVALLRSMQAS-GVRADVVTYGTLIRGLCDAAELDGALE 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + SG P+ VY+ +++GY
Sbjct: 172 LLGEMCGSGVHPNVIVYSCLLRGY 195
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TYN L+ CLCK S+ ++M G+ P++VTY LI +
Sbjct: 246 MVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDK-GVAPDVVTYNTLIAGLSGVL 304
Query: 61 NLREAMRLVSAL--SDSGFKPDCFVYNTIMKG 90
+ AM L+ + D+ +PD +N+++ G
Sbjct: 305 EMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHG 336
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y+ ++ CK + + M G+ P+ VTY+ILI+ +L EA R+
Sbjct: 465 DAVAYSTMMYGACKSGDIKAAKQLLQDMLDE-GLAPDAVTYSILINMFAKLGDLEEAERV 523
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ ++ SGF PD V+++++KGY
Sbjct: 524 LKQMAASGFVPDVAVFDSLIKGY 546
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y+ L++ C+ V ++M + LG++P+++ +T ID++C + +A++
Sbjct: 183 PNVIVYSCLLRGYCRSGRWQDVSKVFEEM-SRLGVEPDVIMFTGFIDDLCKKGRIGKAVK 241
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +P+ YN ++
Sbjct: 242 VKDIMVQRGLEPNVVTYNVLI 262
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 9 DIFTYNFLVKCLCK-CRSLTTVYNFVDQM--RASLGIKPNLVTYTILIDNVCNTKNLREA 65
D +YN ++ LC+ L + + M A +PN V+YT+++ +C ++ EA
Sbjct: 75 DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ ++ SG + D Y T+++G
Sbjct: 135 VALLRSMQASGVRADVVTYGTLIRG 159
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY L++ LC L + +M S G+ PN++ Y+ L+ C + ++ ++
Sbjct: 149 DVVTYGTLIRGLCDAAELDGALELLGEMCGS-GVHPNVIVYSCLLRGYCRSGRWQDVSKV 207
Query: 69 VSALSDSGFKPDCFVY 84
+S G +PD ++
Sbjct: 208 FEEMSRLGVEPDVIMF 223
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
K + PD+ TYN L+ L + +++M + ++P++VT+ +I +C +
Sbjct: 284 KGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRM 343
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
R+A+ + +++ G + YN ++ G+
Sbjct: 344 RQAISVREMMAERGCMCNLVTYNYLIGGF 372
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI L PD FTY+ L+ K + F+ M GI+ L Y L+ +C
Sbjct: 388 LISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTM-TQRGIRAELFHYIPLLAALCQLG 446
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + + D D Y+T+M G
Sbjct: 447 MMEQAMVLFNEM-DMNCGLDAVAYSTMMYG 475
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN+L+ + + N + ++ +S G++P+ TY+ILI+ + A
Sbjct: 361 NLVTYNYLIGGFLRVHKVNMAMNLMSELISS-GLEPDSFTYSILINGFSKLWEVDRAEMF 419
Query: 69 VSALSDSGFKPDCFVY 84
+ ++ G + + F Y
Sbjct: 420 LRTMTQRGIRAELFHY 435
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK ++ ++ M+A G P+++TYTIL+D +C + A
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVELLESMKAR-GCSPDVITYTILVDGLCKESKVAAAWE 247
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + D+G P+ YN+++ G
Sbjct: 248 VLREMLDAGCVPNLVTYNSLLHG 270
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC+ R ++ + M G PN+VTY LID +C +++A
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCR-GCTPNVVTYGTLIDGLCKVGRVKDACA 317
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + D G PD +YN ++ G
Sbjct: 318 MLADMIDKGGTPDLMIYNMLING 340
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD+ YN L+ LCK + + + S GIKP++VTY+ +I +C +
Sbjct: 322 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA-VSGGIKPDVVTYSSVIYGLCRSN 380
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA RL+ + G PD +Y+T++ G
Sbjct: 381 RLDEACRLLLYVKSRGCPPDVILYSTLIDG 410
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ Y+ L+ LCK + ++ + M A G ++VTY+ LID +C + EA
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDEAFDLYEVM-AGDGCDADVVTYSTLIDGLCKAGRVDEAH 456
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G P YN+++KG
Sbjct: 457 LLLARMVRMGTPPSTMTYNSLIKG 480
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY LV LCK + + + +M + G PNLVTY L+ +C + + +A+
Sbjct: 224 PDVITYTILVDGLCKESKVAAAWEVLREMLDA-GCVPNLVTYNSLLHGLCRARRVSDALA 282
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ G P+ Y T++ G
Sbjct: 283 LMRDMTCRGCTPNVVTYGTLIDG 305
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY L++ C+ + D+MR S + PN+ +ILID +C K +A+R
Sbjct: 7 PDVYTYAALLRGFCRGGEIDQAQRCFDEMR-SKNLVPNVFLCSILIDGLCKAKRSIDALR 65
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
A+ SG D +Y ++ G
Sbjct: 66 CFRAMQGSGIVADTVIYTALLSG 88
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY+ L+ LCK + + + +M +G P+ +TY LI +C+ +L EA+ L
Sbjct: 435 DVVTYSTLIDGLCKAGRVDEAHLLLARM-VRMGTPPSTMTYNSLIKGLCDLNHLDEAIEL 493
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + S P YN ++ G
Sbjct: 494 VEEMERSNCAPSAVTYNILIHG 515
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TY+ ++ LC+ L + ++ S G P+++ Y+ LID +C + EA
Sbjct: 362 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK-SRGCPPDVILYSTLIDGLCKAGKVDEA 420
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ G D Y+T++ G
Sbjct: 421 FDLYEVMAGDGCDADVVTYSTLIDG 445
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++F + L+ LCK + M+ S GI + V YT L+ + K L
Sbjct: 38 KNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGS-GIVADTVIYTALLSGLWKEKRLD 96
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ ++ + D G +P+ YN+++ G
Sbjct: 97 QALAILHEMRDHGCEPNVVTYNSLIDG 123
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL----GIKPNLVTYTILIDNVCNTKNLR 63
P TYN L+ +C+ + + ++Q +A G + + Y+ LID +C +
Sbjct: 504 PSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVA 563
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + D+G PD Y+ +++G
Sbjct: 564 EALDYFQEMIDNGVIPDHITYSILLEG 590
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP TYN L+K LC L V++M S P+ VTY ILI +C + + A+
Sbjct: 468 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS-NCAPSAVTYNILIHGMCRMERVDSAV 526
Query: 67 RLVS-----ALSDSGFKPDCFVYNTIMKG 90
L+ ++ G D Y++++ G
Sbjct: 527 VLLEQAKARCVAAGGTALDTIAYSSLIDG 555
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y L+ L K + L + +MR G +PN+VTY LID +C A L
Sbjct: 78 DTVIYTALLSGLWKEKRLDQALAILHEMRDH-GCEPNVVTYNSLIDGLCKNNEPDRAQEL 136
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ P YNT++ G
Sbjct: 137 FEHMKSVECSPSMVTYNTLLDG 158
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK + M+ S+ P++VTY L+D + T L AM
Sbjct: 112 PNVVTYNSLIDGLCKNNEPDRAQELFEHMK-SVECSPSMVTYNTLLDGLFRTGKLERAMA 170
Query: 68 LVSAL-------SDSGFKPDCFVYNTIMKG 90
L + D P+ Y+ ++ G
Sbjct: 171 LFQEMLDRRSHDMDDRCSPNVITYSVLIDG 200
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TYN L+ C+C + + D+M AS GIKP TYT L+ + ++
Sbjct: 390 KGISPDAITYNILINGYCRCANAKKAFLLHDEMLAS-GIKPTKKTYTSLLHVLSKKNRMK 448
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L ++ G PD ++N ++ G+
Sbjct: 449 EADDLFKKITSEGVLPDAIMFNALIDGH 476
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ ++T+N ++ LCK L +FV M S G+KPN+VTY ++ C++ +
Sbjct: 216 RIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETS-GVKPNIVTYNTIVHGYCSSGRVEA 274
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++ + +PD F Y +++ G
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISG 300
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PPD T+N +++ C+ + D+M+ GIKP+ +++ LI ++++
Sbjct: 496 KVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR-GIKPDHISFNTLISGYSRRGDIKD 554
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A R+ + + D+GF P YN +++G
Sbjct: 555 AFRVRNEMLDTGFNPTVLTYNALVQG 580
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD FTY L+ +CK L ++M G++P+ V Y LID CN NL
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEM-VQKGLRPSAVIYNTLIDGFCNKGNLD 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + G P YN+++
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHA 370
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +N L+ C ++ + + M + + P+ VT+ ++ C + EA
Sbjct: 464 PDAIMFNALIDGHCSNSNVKGAFELLKDMD-RMKVPPDEVTFNTIMQGHCREGKVEEARE 522
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KPD +NT++ GY
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGY 546
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I T N L+ K + +M L IK ++ T+ I+I+ +C L+
Sbjct: 180 KGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM-FRLRIKSSVYTFNIMINVLCKEGKLK 238
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A V + SG KP+ YNTI+ GY
Sbjct: 239 KAKDFVGHMETSGVKPNIVTYNTIVHGY 266
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P + TYN L+ L + + +++ GI P+ +TY ILI+ C
Sbjct: 352 MLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK-GISPDAITYNILINGYCRCA 410
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N ++A L + SG KP Y +++
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLL 438
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD ++N L+ + + + ++M + G P ++TY L+ +C +
Sbjct: 530 RGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDT-GFNPTVLTYNALVQGLCKNQEGD 588
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + G PD Y T+++G
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEG 615
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +YN L+ C +D+M G++P++VT+ +LID +C + EA +
Sbjct: 248 PSIISYNSLIHGFCCAGKWEESKRLLDEMLDQ-GLQPDMVTFNVLIDTLCKEGKVIEAKK 306
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +SG PD YN++++G+
Sbjct: 307 LLGVMIESGIVPDLVTYNSLIEGF 330
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I N L+ LCK L T + +++ ++ G +PN+VTYTI+I C + +A L
Sbjct: 459 EIENLNCLIDGLCKAGKLETAWELFEKL-SNEGHEPNVVTYTIMIHGFCREGQVDKANVL 517
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +G PD YNT+M+G+
Sbjct: 518 IQKMEANGCTPDIITYNTLMRGF 540
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ T+N L+ LCK + + M S GI P+LVTY LI+ C
Sbjct: 276 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES-GIVPDLVTYNSLIEGFCMVG 334
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L ++ G +PD YN ++ GY
Sbjct: 335 DLNSARELFVSMPSKGCEPDVISYNVLINGY 365
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-----RASLGIKPNLVTYTILIDNVCNTKNL 62
PD+ TY L+K LC ++ +M R + KPN++TY I++D +C
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRE 231
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + G P YN+++ G+
Sbjct: 232 DEAKQLFEEMKTQGMIPSIISYNSLIHGF 260
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 1 LIFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
L+ + P P + ++N L+ L K + + V++ +QMR S G+ + T IL++ +CN
Sbjct: 59 LMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLS-GLSSDRCTLNILLNCLCNV 117
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LRE + + G+ P+ YNT++KG
Sbjct: 118 NRLREGFAAFAGILRRGYSPNIVTYNTLIKG 148
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN +V LCK ++M+ G+ P++++Y LI C E+ R
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ-GMIPSIISYNSLIHGFCCAGKWEESKR 271
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + D G +PD +N ++
Sbjct: 272 LLDEMLDQGLQPDMVTFNVLI 292
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TYN L++ C L + M S G +P++++Y +LI+ T
Sbjct: 311 MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM-PSKGCEPDVISYNVLINGYSKTL 369
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EAM+L + + G +P+ Y++++KG
Sbjct: 370 KVEEAMKLYNEMLLVGKRPNVITYDSLLKG 399
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L D T N L+ CLC L + F +R G PN+VTY LI +C + E
Sbjct: 100 LSSDRCTLNILLNCLCNVNRLREGFAAFAGILRR--GYSPNIVTYNTLIKGLCMEHRISE 157
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A RL + G PD Y T++KG
Sbjct: 158 ATRLFLRMQKLGCTPDVVTYGTLIKG 183
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TYN L+K LC ++ +M+ LG P++VTY LI +C T N+ A++
Sbjct: 137 PNIVTYNTLIKGLCMEHRISEATRLFLRMQ-KLGCTPDVVTYGTLIKGLCGTGNINIALK 195
Query: 68 LVSALSDS------GFKPDCFVYNTIMKG 90
L + + KP+ YN I+ G
Sbjct: 196 LHQEMLNDISRYEINCKPNVITYNIIVDG 224
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+K + + M+A GI N TY I +D +C L EAM+
Sbjct: 388 PNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH-GIAENSYTYGIFLDGLCKNDCLFEAMK 446
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + L S FK + N ++ G
Sbjct: 447 LFTELKSSNFKLEIENLNCLIDG 469
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ +YN L+ K + ++M +G +PN++TY L+ + +
Sbjct: 349 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLL-VGKRPNVITYDSLLKGIFLAGKVD 407
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +L S + G + + Y + G
Sbjct: 408 DAKKLFSVMKAHGIAENSYTYGIFLDG 434
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY ++ C+ + + +M A+ G P+++TY L+ + L E ++
Sbjct: 493 PNVVTYTIMIHGFCREGQVDKANVLIQKMEAN-GCTPDIITYNTLMRGFYESNKLEEVVQ 551
Query: 68 LVSALSDSGFKPD 80
L+ ++ PD
Sbjct: 552 LLHRMAQKDVSPD 564
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PD+ T+ L+ C + DQ+ +G +PN+VTYT LI +C ++L A
Sbjct: 148 FEPDLVTFTSLLHGFCHWNRIEDALALFDQI-VGMGFRPNVVTYTTLIHCLCKNRHLNHA 206
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + + D+G +P+ YN+++ G
Sbjct: 207 VEIFNQMGDNGIRPNVVTYNSLVSG 231
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ CLCK R L +QM GI+PN+VTY L+ +C +A
Sbjct: 185 PNVVTYTTLIHCLCKNRHLNHAVEIFNQM-GDNGIRPNVVTYNSLVSGLCEIGRWSDAAW 243
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G +P+ + ++ +
Sbjct: 244 LLRDMMKRGIQPNVITFTALIDAF 267
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ PPDI TYN L+ LC + MR + N+VTYTI+I +C +
Sbjct: 391 RRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKR-EMDINIVTYTIIIQGMCKVGKVE 449
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L +L G KP+ Y T++ G+
Sbjct: 450 DAFDLFCSLFSKGMKPNVITYTTMISGF 477
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR------ASLGIKPNLVTYTILIDNVCNTKN 61
PD+FTY L+ LC Y +D+ R S G PN VTYT LI C +K
Sbjct: 290 PDVFTYTALINGLC-------TYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKR 342
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + ++ +S G + Y +++GY
Sbjct: 343 VEDGTKIFYEMSQKGLVANTITYTVLIQGY 372
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
IF Q+ P++ TYN LV LC+ R + D M+ GI+PN++T+T LID
Sbjct: 209 IFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKR--GIQPNVITFTALIDA 266
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA L + PD F Y ++ G
Sbjct: 267 FVKVGKIMEAKELYKVMIQMSVYPDVFTYTALING 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P ++T N ++ C+C+ F+ +M LG +P+LVT+T L+ C+ + +A
Sbjct: 113 ISPVLYTCNIVMNCVCRSSQPCRASCFLGKM-MKLGFEPDLVTFTSLLHGFCHWNRIEDA 171
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+ L + GF+P+ Y T++
Sbjct: 172 LALFDQIVGMGFRPNVVTYTTLIH 195
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ +I TY +++ +CK + ++ + S G+KPN++TYT +I C +
Sbjct: 426 REMDINIVTYTIIIQGMCKVGKVEDAFDLFCSL-FSKGMKPNVITYTTMISGFCRRGFIH 484
Query: 64 EAMRLVSALSDSGFKPD 80
EA L + + GF P+
Sbjct: 485 EADALFKKMKEDGFLPN 501
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P++ T+ L+ K + M + + P++ TYT LI+ +C L
Sbjct: 251 RGIQPNVITFTALIDAFVKVGKIMEAKELYKVM-IQMSVYPDVFTYTALINGLCTYGRLD 309
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + +G+ P+ Y T++ G+
Sbjct: 310 EARQMFYLMESNGYYPNEVTYTTLIHGF 337
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I + L+ + K + V + +QM+ LGI P L T I+++ VC + A
Sbjct: 80 PSIVDFTRLLSVIAKMKRFDVVISLFEQMQI-LGISPVLYTCNIVMNCVCRSSQPCRASC 138
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + GF+PD + +++ G+
Sbjct: 139 FLGKMMKLGFEPDLVTFTSLLHGF 162
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ CK + + +M + G+ N +TYT+LI C A
Sbjct: 325 PNEVTYTTLIHGFCKSKRVEDGTKIFYEM-SQKGLVANTITYTVLIQGYCLVGRPDVAQE 383
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + PD YN ++ G
Sbjct: 384 VFNQMGSRRAPPDIRTYNVLLDG 406
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TYN L++ LC +D+M + P++VTYTIL++ C ++AM+
Sbjct: 30 PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCV-PDVVTYTILLEATCKRSGYKQAMK 88
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D G PD YN ++ G
Sbjct: 89 LLDEMRDKGCTPDIVTYNVVVNG 111
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ TY L++ CK +D+MR G P++VTY ++++ +C
Sbjct: 58 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDK-GCTPDIVTYNVVVNGICQEG 116
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + L G +P+ YN ++KG
Sbjct: 117 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKG 146
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+ +Q+P P+ +YN L+ CK + + F+D M S G P++V+Y L+ +
Sbjct: 194 VLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM-VSRGCYPDIVSYNTLLTAL 252
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + + A+ L+ L D G P YNT++ G
Sbjct: 253 CRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 286
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PP++ T+N L+ LC+ + ++Q+ G PN ++Y L+ C K +
Sbjct: 166 KGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI-PKYGCTPNSLSYNPLLHAFCKQKKMD 224
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + + G PD YNT++
Sbjct: 225 KAMAFLDLMVSRGCYPDIVSYNTLL 249
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + +YN ++ L K +++M S G++P+++TY+ + +C +
Sbjct: 271 KGCAPVLISYNTVIDGLTKAGKTKEALELLNEM-VSKGLQPDIITYSTIAAGLCREDRIE 329
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R + D G +P+ +YN I+ G
Sbjct: 330 DAIRAFGKVQDMGIRPNTVLYNAIILG 356
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN +V +C+ + F+ + S G +PN V+Y I++ +C +
Sbjct: 96 KGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNL-PSYGCEPNTVSYNIVLKGLCTAERWE 154
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ + G P+ +N ++
Sbjct: 155 DAEELMGEMGQKGCPPNVVTFNMLI 179
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PDI TY+ + LC+ + +++ +GI+PN V Y +I +C +
Sbjct: 303 MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQ-DMGIRPNTVLYNAIILGLCKRR 361
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + + +G P+ Y +++G
Sbjct: 362 ETHSAIDLFAYMIGNGCMPNESTYTILIEG 391
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 3 FKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
K LP P+ +YN ++K LC + +M G PN+VT+ +LI +C
Sbjct: 125 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM-GQKGCPPNVVTFNMLISFLC 183
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ ++ + G P+ YN ++ +
Sbjct: 184 RKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAF 217
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD FTY L+ ++ + D+M G+ PN+VTY LI+ +C ++
Sbjct: 740 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM-LRRGLVPNIVTYNALINGLCKSE 798
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A RL L G P+ YNT++ GY
Sbjct: 799 NVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 829
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ TYN L+ CK ++ + D+M GI P++VTY+ LI+ +C ++
Sbjct: 813 KGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEE-GISPSVVTYSALINGLCKHGDIE 871
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+M+L++ + +G Y T+++GY
Sbjct: 872 RSMKLLNQMIKAGVDSKLIEYCTLVQGY 899
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+I TYN L+ LCK ++ ++ G+ PN+VTY LID C
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGYCKIG 833
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A +L + + G P Y+ ++ G
Sbjct: 834 NMDAAFKLKDKMIEEGISPSVVTYSALING 863
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ C+ + +D+M LG+K NL LI+ C + EA
Sbjct: 328 LVPDERAYGVLIDGYCRTGKIDDAVRLLDEM-LRLGLKTNLFICNSLINGYCKRGEIHEA 386
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + D KPD + YNT++ GY
Sbjct: 387 EGVITRMVDWNLKPDSYSYNTLLDGY 412
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F + +V CK + FV +M +LG++PN+VTY LI+ + ++ A
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKME-NLGVEPNIVTYHSLINGYVSLGDVEAAKG 282
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +S+ G + Y ++KGY
Sbjct: 283 VLKFMSEKGVSRNVVTYTLLIKGY 306
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD ++YN L+ C+ + +N D+M GI+P ++TY L+ +C +A
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE-GIEPTVLTYNTLLKGLCRVGAFDDA 456
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G PD Y+T++ G
Sbjct: 457 LQIWHLMMKRGVAPDEVGYSTLLDG 481
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N ++ LCK + D+M+ LG P+ +TY LID C N+ +A ++ A
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ P +YN+++ G
Sbjct: 568 MEREPISPSIEMYNSLISG 586
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ TY L+K CK + + M+ + P+ Y +LID C T +
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+RL+ + G K + F+ N+++ GY
Sbjct: 350 DAVRLLDEMLRLGLKTNLFICNSLINGY 377
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P I YN L+ L K R L V + + +M G+ PN+VTY LID C L +A
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEM-GIRGLTPNIVTYGALIDGWCKEGMLDKA 631
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++++G + + +T++ G
Sbjct: 632 FSSYFEMTENGLSANIIICSTMVSG 656
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L ++F N L+ CK + + +M +KP+ +Y L+D C + EA
Sbjct: 363 LKTNLFICNSLINGYCKRGEIHEAEGVITRM-VDWNLKPDSYSYNTLLDGYCREGHTSEA 421
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G +P YNT++KG
Sbjct: 422 FNLCDKMLQEGIEPTVLTYNTLLKG 446
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
PN + Y I I +C T + +A R S LS GF PD F Y T++ GY
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGY 759
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TYN L+K LC+ + M G+ P+ V Y+ L+D + +
Sbjct: 428 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKR-GVAPDEVGYSTLLDGLFKME 486
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A L + GF +NT++ G
Sbjct: 487 NFEGASTLWKDILARGFTKSRITFNTMISG 516
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD Y+ L+ L K + + A G + +T+ +I +C
Sbjct: 463 MMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILAR-GFTKSRITFNTMISGLCKMG 521
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + D G PD Y T++ GY
Sbjct: 522 KMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 552
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD Y ++ LCK S Y M+ + G P +VTY +L+D +C
Sbjct: 577 MLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQT-GCAPTVVTYNVLVDKLCKVS 635
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L+ + G PD YN++ G+
Sbjct: 636 RLDEAIHLLEVMESDGCLPDTVTYNSVFDGF 666
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY LV LCK ++ ++ M G PN+VTY LI+ C N+ EA+
Sbjct: 234 PSVITYTILVDALCKSARISDASLILEDM-IEAGCAPNVVTYNTLINGFCKLGNMDEAVV 292
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + ++ PD F YN ++ GY
Sbjct: 293 LFNQMLENSCSPDVFTYNILIDGY 316
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TYN +V LCK + Y + +R G ++VT + LID +C ++ L +A
Sbjct: 443 PPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNG-GYFLDVVTCSTLIDGLCKSRRLDDAE 501
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+L+ + +G PD Y ++ G+
Sbjct: 502 KLLREMERNGSAPDVVAYTILIHGF 526
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P FT+N ++ CK L Y Q+ G P++ TY I+I C
Sbjct: 367 MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELF-QLMTDRGCLPDIYTYNIMISGACRAN 425
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A +L+ ++++G PD YN+I+ G
Sbjct: 426 RIDDARQLLERMTEAGCPPDVVTYNSIVSG 455
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y L+ CK L F +M G P ++TY+I+ID +C + +R+
Sbjct: 514 PDVVAYTILIHGFCKADQLDKSLAFFSEM-LDKGCVPTVITYSIVIDKLCKSARVRDGCM 572
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G PD VY +++ G
Sbjct: 573 LLKTMLERGVTPDAIVYTSVIDG 595
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FT N L+ + + Y+ R L P+ +TY+ LI+ C ++ ++A RL+
Sbjct: 133 FTCNCLLSAFVRKKKAQEAYDLFKNHRCGL-CSPDSITYSTLINGFCKARDFQQAYRLLD 191
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G P VYNTI+KG
Sbjct: 192 EMEKRGIVPHNAVYNTIIKG 211
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 35/118 (29%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI------------------------- 42
PD TY+ L+ CK R Y +D+M GI
Sbjct: 165 PDSITYSTLINGFCKARDFQQAYRLLDEMEKR-GIVPHNAVYNTIIKGLCDNGRVDSALV 223
Query: 43 ---------KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
P+++TYTIL+D +C + + +A ++ + ++G P+ YNT++ G+
Sbjct: 224 HYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGF 281
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I P++ TYN L+ CK ++ +QM + P++ TY ILID C +
Sbjct: 262 MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLEN-SCSPDVFTYNILIDGYCKQE 320
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +L+ + G +P+ YNT+M
Sbjct: 321 RPQDGAKLLQEMVKYGCEPNFITYNTLM 348
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ L K +N QM KP+ T+ ++ID C L A
Sbjct: 339 PNFITYNTLMDSLVKSGKYIDAFNLA-QMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 397
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++D G PD + YN ++ G
Sbjct: 398 LFQLMTDRGCLPDIYTYNIMISG 420
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN LV LCK L + ++ M + G P+ VTY + D + +A R
Sbjct: 619 PTVVTYNVLVDKLCKVSRLDEAIHLLEVMESD-GCLPDTVTYNSVFDGFWKSAEHDKAFR 677
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L A+ G P F+Y+ ++
Sbjct: 678 LFQAMKSRGCSPTPFMYSLLL 698
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ T + L+ LCK R L + +M + G P++V YTILI C L +++
Sbjct: 480 DVVTCSTLIDGLCKSRRLDDAEKLLREMERN-GSAPDVVAYTILIHGFCKADQLDKSLAF 538
Query: 69 VSALSDSGFKPDCFVYNTIM 88
S + D G P Y+ ++
Sbjct: 539 FSEMLDKGCVPTVITYSIVI 558
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN L+ CK + +M G +PN +TY L+D++ + +A
Sbjct: 304 PDVFTYNILIDGYCKQERPQDGAKLLQEM-VKYGCEPNFITYNTLMDSLVKSGKYIDAFN 362
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + KP F +N ++
Sbjct: 363 LAQMMLRRDCKPSHFTFNLMI 383
>gi|255660978|gb|ACU25658.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 373
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK + YN V ++ G+ P ++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKNKMFGEAYNLVKELLDK-GLDPGVITYSMLMXGLCLDHXVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C K EA
Sbjct: 162 PNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNKMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +M G
Sbjct: 221 LVKELLDKGLDPGVITYSMLMXG 243
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ +N L+ LC + + M PNLV++ L++ ++R
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLXFDMN-RWKCAPNLVSHNTLMEGFYKDGDIR 321
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + + +G +PD YN ++G
Sbjct: 322 NALVIWARILRNGLEPDIISYNITLEG 348
>gi|224079734|ref|XP_002305931.1| predicted protein [Populus trichocarpa]
gi|222848895|gb|EEE86442.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ YN LV +CK +L ++ G++PN+ YT +I+ +C L EA
Sbjct: 6 LKPDLVMYNILVDAMCKSGNLKDARELFSELFVK-GLQPNVQIYTTIINGLCKEGLLDEA 64
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G PD F YN I++G+
Sbjct: 65 LEAFRNMEEDGCPPDEFSYNVIIRGF 90
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
S +KP+LV Y IL+D +C + NL++A L S L G +P+ +Y TI+ G
Sbjct: 3 SSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIING 54
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 3 FKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
F+++P PD+FTY+ L+ LCK R + +D+M+A G PN VT+ +LID +
Sbjct: 197 FREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAE-GCLPNPVTFNVLIDALS 255
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A +LV + G P+ YNT++ G
Sbjct: 256 KNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 288
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+ Y+ L+ L K +M A G KPN+V Y ID +C + EA ++
Sbjct: 350 YIYSSLISGLFKEGKSENAVRLWKEM-AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQ 408
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ GF P+ F Y+++MKG+
Sbjct: 409 EMLSKGFLPNAFTYSSLMKGF 429
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-ASLGIKPNLVTYTILIDNVCNT 59
++ + L PD+ Y+ ++K LC S+ +M+ +P++VTY IL + +C
Sbjct: 480 MLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQ 539
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
NL A+ L++++ D G PD N ++
Sbjct: 540 DNLTRAIDLLNSMLDEGCDPDSLTCNIFLE 569
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ K P+ FTY+ L+K K S + + + M S ++ N+V ++L++ +C +
Sbjct: 410 MLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMM--SQDMRHNVVCCSVLLNGLCES 467
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LREA+ + + + G KPD Y++++KG
Sbjct: 468 GRLREALTVWTHMLGEGLKPDVVAYSSMIKG 498
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ L K L+ VD M G PN VTY LI +C L +A+
Sbjct: 242 PNPVTFNVLIDALSKNGDLSRAAKLVDNMFLK-GCVPNEVTYNTLIHGLCLKGKLDKALS 300
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + S P+ Y TI+ G
Sbjct: 301 LLEKMVSSKCVPNQVTYGTIING 323
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK---PNLVTYTILIDNVCNTK 60
K P++ TYN ++K LCK L + VD R + +K P++ TY+ L++ +C +
Sbjct: 168 KGFQPNLLTYNLIIKALCK---LGQIDRAVDTFR-EMPLKNCNPDVFTYSTLMNGLCKER 223
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+ L+ + G P+ +N ++
Sbjct: 224 RVDEAVFLLDEMQAEGCLPNPVTFNVLI 251
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC L + +++M +S + PN VTY +I+ + + + +
Sbjct: 277 PNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCV-PNQVTYGTIINGLVKQRRAEDGVH 335
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ + G K + ++Y++++ G
Sbjct: 336 ILMSMEERGQKANEYIYSSLISG 358
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
S G +PNL+TY ++I +C + A+ + PD F Y+T+M G
Sbjct: 167 SKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNG 218
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + T+N L+ +C+ R L V +M + +G+KP++ TY LI C T +
Sbjct: 214 RSVQPTVVTFNTLISGMCRARDLDAVDGLYKEM-SDVGVKPDVYTYGALIKGFCRTGRME 272
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+++ + + D+G P+ V+ T++ +
Sbjct: 273 NAVKMFNEMRDTGVNPNAVVFTTLIDAH 300
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY L+K C+ + ++MR + G+ PN V +T LID C N+ M
Sbjct: 253 PDVYTYGALIKGFCRTGRMENAVKMFNEMRDT-GVNPNAVVFTTLIDAHCKEGNVNAGMD 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G PD YN ++ G
Sbjct: 312 LYQDMRVRGVMPDLVAYNALVNG 334
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN LV LC+ R+L + V++M+ + G+KP+ VTYT LID C L AM
Sbjct: 323 PDLVAYNALVNGLCRARNLKAAESIVEEMKNA-GLKPDKVTYTTLIDGCCKDGKLDMAMD 381
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +++ D Y ++ G
Sbjct: 382 IKQKMAEKEVSLDEVTYTALISG 404
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ +N L++ + L + D+MR S ++P +VT+ LI +C ++L
Sbjct: 182 MAPETRLFNVLMRDFVRLGELVSARKVFDEMRRS--VQPTVVTFNTLISGMCRARDLDAV 239
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L +SD G KPD + Y ++KG+
Sbjct: 240 DGLYKEMSDVGVKPDVYTYGALIKGF 265
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ + L+ CK ++ + MR G+ P+LV Y L++ +C +NL+ A
Sbjct: 288 PNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVR-GVMPDLVAYNALVNGLCRARNLKAAES 346
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V + ++G KPD Y T++ G
Sbjct: 347 IVEEMKNAGLKPDKVTYTTLIDG 369
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY ++ C+ + T + + +M+ G KP +VTY ++++ +C ++ A
Sbjct: 426 LEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNK-GKKPGVVTYNVIMNGLCKLGQMKNA 484
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ A+ + G PD YN ++ G
Sbjct: 485 DMLLHAMLNIGVSPDDITYNILLDG 509
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ LCK + + M ++G+ P+ +TY IL+D C + +
Sbjct: 463 PGVVTYNVIMNGLCKLGQMKNADMLLHAM-LNIGVSPDDITYNILLDGQCKHGKVANSEE 521
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L S+ G PD VY +++
Sbjct: 522 LESS---KGMVPDFAVYTSLI 539
>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 376
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + +A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLNPGVITYSMLMKGLCLDHKVEKALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLNPGVITYSMLMKG 243
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVV-DAFAYSAMINGLCKEANLDRAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNAHVYNTLING 173
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD FTY L+ ++ + D+M G+ PN+VTY LI+ +C ++
Sbjct: 706 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM-LRRGLVPNIVTYNALINGLCKSE 764
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A RL L G P+ YNT++ GY
Sbjct: 765 NVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 795
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ C+ + +D+M LG+K NL LI+ C + EA
Sbjct: 294 LVPDERAYGVLIDGYCRTGKIDDAVRLLDEM-LRLGLKTNLFICNSLINGYCKRGEIHEA 352
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + D KPD + YNT++ GY
Sbjct: 353 EGVITRMVDWNLKPDSYSYNTLLDGY 378
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F + +V CK + FV +M +LG++PN+VTY LI+ + ++ A
Sbjct: 190 PDVFMVSIMVNAFCKDGKVDEAAGFVKKME-NLGVEPNIVTYHSLINGYVSLGDVEAAKG 248
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +S+ G + Y ++KGY
Sbjct: 249 VLKFMSEKGVSRNVVTYTLLIKGY 272
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD ++YN L+ C+ + +N D+M GI+P ++TY L+ +C +A
Sbjct: 364 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE-GIEPTVLTYNTLLKGLCRVGAFDDA 422
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G PD Y+T++ G
Sbjct: 423 LQIWHLMMKRGVAPDEVGYSTLLDG 447
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+I TYN L+ LCK ++ ++ G+ PN+VTY LID C
Sbjct: 741 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGYCKIG 799
Query: 61 NLREAMRLVSALSDSGFKP 79
N+ A +L + + G P
Sbjct: 800 NMDAAFKLKDKMIEEGISP 818
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ TY L+K CK + + M+ + P+ Y +LID C T +
Sbjct: 256 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 315
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+RL+ + G K + F+ N+++ GY
Sbjct: 316 DAVRLLDEMLRLGLKTNLFICNSLINGY 343
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N ++ LCK + D+M+ LG P+ +TY LID C N+ +A ++ A
Sbjct: 475 TFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 533
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ P +YN+++ G
Sbjct: 534 MEREPISPSIEMYNSLISG 552
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P I YN L+ L K R L V + + +M G+ PN+VTY LID C L +A
Sbjct: 539 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEM-GIRGLTPNIVTYGALIDGWCKEGMLDKA 597
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++++G + + +T++ G
Sbjct: 598 FSSYFEMTENGLSANIIICSTMVSG 622
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L ++F N L+ CK + + +M +KP+ +Y L+D C + EA
Sbjct: 329 LKTNLFICNSLINGYCKRGEIHEAEGVITRM-VDWNLKPDSYSYNTLLDGYCREGHTSEA 387
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G +P YNT++KG
Sbjct: 388 FNLCDKMLQEGIEPTVLTYNTLLKG 412
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
PN + Y I I +C T + +A R S LS GF PD F Y T++ GY
Sbjct: 678 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGY 725
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TYN L+K LC+ + M G+ P+ V Y+ L+D + +
Sbjct: 394 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKR-GVAPDEVGYSTLLDGLFKME 452
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A L + GF +NT++ G
Sbjct: 453 NFEGASTLWKDILARGFTKSRITFNTMISG 482
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD Y+ L+ L K + + A G + +T+ +I +C
Sbjct: 429 MMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILAR-GFTKSRITFNTMISGLCKMG 487
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + D G PD Y T++ GY
Sbjct: 488 KMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 518
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 6 LPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P+ TYN L+ LC+ R+L ++F + + G+ PN TYT+LID C N +
Sbjct: 625 IEPNEITYNVLIHALCRTGRTLLAYHHFHEMLER--GLAPNKYTYTLLIDGNCREGNWAD 682
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL + +G PD +N + KG+
Sbjct: 683 AIRLYFEMHQNGIPPDYCTHNALFKGF 709
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ L K + +MRA +G+ P+L+TY +++ C NL+EA+
Sbjct: 347 PTLVTYNAIIHGLLKSEQVEAAQLKFAEMRA-MGLLPDLITYNSMLNGYCKAGNLKEALW 405
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ L +G P YNT++ GY
Sbjct: 406 LLGDLRRAGLAPTVLTYNTLIDGY 429
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN ++ CK +L + +R + G+ P ++TY LID C L EA
Sbjct: 380 LLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRA-GLAPTVLTYNTLIDGYCRLGGLEEA 438
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + G PD Y +M G
Sbjct: 439 RRLKEEMVEQGCFPDVCTYTILMNG 463
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TYN L+ C+ L ++M G P++ TYTIL++ +NL A
Sbjct: 415 LAPTVLTYNTLIDGYCRLGGLEEARRLKEEM-VEQGCFPDVCTYTILMNGSHKVRNLPMA 473
Query: 66 MRLVSALSDSGFKPDCFVYNT 86
+ G +PDCF YNT
Sbjct: 474 REFFDEMLSKGLQPDCFAYNT 494
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVC 57
++ K L PD F YN + C L + Q+R + GI P+ VTY ++ID +C
Sbjct: 480 MLSKGLQPDCFAYNTRI---CAELILGDTHKAF-QLREVMMLKGIYPDTVTYNVIIDGLC 535
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
T NL++A L + G +PDC Y ++ +
Sbjct: 536 KTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAH 569
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ C+ L+ ++ M S G++P++VTYTILI C NL A
Sbjct: 555 LQPDCITYTCLIHAHCERGLLSEARKLLNGM-VSDGLQPSVVTYTILIHTCCRRGNLYSA 613
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ D G +P+ YN ++
Sbjct: 614 YGWFRKMLDVGIEPNEITYNVLI 636
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TY L+ C+ +L + Y + +M +GI+PN +TY +LI +C T A
Sbjct: 590 LQPSVVTYTILIHTCCRRGNLYSAYGWFRKM-LDVGIEPNEITYNVLIHALCRTGRTLLA 648
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ + Y ++ G
Sbjct: 649 YHHFHEMLERGLAPNKYTYTLLIDG 673
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FTYN L+ L + R + + GI P LVTY +I + ++ + A +
Sbjct: 315 FTYNPLITALLE-RGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFA 373
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ G PD YN+++ GY
Sbjct: 374 EMRAMGLLPDLITYNSMLNGY 394
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + +YN L+ LCK + Y+FV +M KP+++TY++L+D +C K +
Sbjct: 493 KGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEK-DWKPDMITYSLLMDGLCQGKKID 551
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + G +PD ++N +M G
Sbjct: 552 MALNLWRQVLVKGLEPDVTMHNILMHG 578
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY+ L+ LC+ + + N Q+ G++P++ + IL+ +C+
Sbjct: 525 MLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVK-GLEPDVTMHNILMHGLCSAG 583
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L S + S P+ +NT+M G
Sbjct: 584 KIEDALLLYSNMKQSNCLPNLVTHNTLMDG 613
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD+ +N L+ LC + M+ S PNLVT+ L+D + +
Sbjct: 560 VLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQS-NCLPNLVTHNTLMDGLYKAR 618
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + + +GF+PD YN +KG
Sbjct: 619 ECEMASVIWACMFKNGFQPDIISYNITLKG 648
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+K K R +D M S +KP++ +Y +I+ + + +L A+
Sbjct: 147 PNLQTYNILIKISVKKRQFVEAKGLLDWM-WSKDLKPDVYSYGTVINGMVKSGDLVSALE 205
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G PD YN ++ G+
Sbjct: 206 VFDEMFERGLVPDVMCYNIMIDGF 229
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +YN L+ + L +F+ ++GI PNL TY ILI + EA
Sbjct: 112 PGIRSYNALLNAFIEANLLEKAESFLAYFE-TVGILPNLQTYNILIKISVKKRQFVEAKG 170
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + KPD + Y T++ G
Sbjct: 171 LLDWMWSKDLKPDVYSYGTVING 193
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ +YN ++ L + R + + + +R G + TY +LI +C +L +A+++
Sbjct: 358 NVVSYNIFIRGLFENRKVEEAISVWELLRRR-GSGADSTTYGVLIHGLCKNGHLNKALKI 416
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ D G K D F Y++I+ G
Sbjct: 417 LKEAKDGGDKLDAFAYSSIVDG 438
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 41/87 (47%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+ YN ++ K +++ + PN+VTY ++I+ +C
Sbjct: 213 RGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFD 272
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
E++ + + + + D F Y++++ G
Sbjct: 273 ESLEMWERMKKNECEMDLFTYSSLICG 299
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+++Y ++ + K L + D+M G+ P+++ Y I+ID +
Sbjct: 178 KDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFER-GLVPDVMCYNIMIDGFFKRGDYV 236
Query: 64 EAMRLVSAL-SDSGFKPDCFVYNTIMKG 90
+ + L S P+ YN ++ G
Sbjct: 237 QGKEIWERLVKGSCVYPNVVTYNVMING 264
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ LCK ++M+ + + +L TY+ LI +C+ N+ A+
Sbjct: 253 PNVVTYNVMINGLCKMGRFDESLEMWERMKKN-ECEMDLFTYSSLICGLCDVGNVDGAVE 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D YN ++ G+
Sbjct: 312 VYKEMVKRSVVVDVVTYNALLNGF 335
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TY+ L+ CK R + + ++QM + GI P +VTY IL++++C
Sbjct: 175 MVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM-VTQGIAPTVVTYNILLNSLCRAD 233
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A +L ++ P YNT+++
Sbjct: 234 KLEDAFKLFRGMAQRRCHPTVVTYNTLLRA 263
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD TY +V+ LCK + + V++M A+ GIKP+ Y ++ +C + + EA
Sbjct: 6 PPDALTYGPIVERLCKTKRIDDALATVEEM-ATRGIKPDAFIYNFVLSGLCQEEKVEEAR 64
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + P+ YNT++ G
Sbjct: 65 LLFEKMVKQRINPNVVTYNTLING 88
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TYN L+ LCK + T Y +M A G P V+Y LID C K
Sbjct: 70 MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEM-AGKGYVPTEVSYNTLIDGFCKKK 128
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A + + S P+ Y T++ G
Sbjct: 129 DLVAAKDVFDKMVRSNCVPNVVTYTTLIDG 158
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD F YNF++ LC+ + ++M I PN+VTY LI+ +C +
Sbjct: 38 RGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM-VKQRINPNVVTYNTLINGLCKAWRIE 96
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L ++ G+ P YNT++ G+
Sbjct: 97 TAYELFKEMAGKGYVPTEVSYNTLIDGF 124
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TYN L+ LC+ L + M A P +VTY L+ +C+ K
Sbjct: 210 MVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM-AQRRCHPTVVTYNTLLRALCHHK 268
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A RL + + G PD Y+T+ G
Sbjct: 269 QLDGAHRLYAEMIAKGCPPDAITYDTLAWG 298
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ L K + +D M G+ PN+ TY+ LID C + + EA +
Sbjct: 147 PNVVTYTTLIDGLSKSGKVQAAAEVLDGM-VKKGVTPNVATYSCLIDGFCKVRRVDEAHK 205
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G P YN ++
Sbjct: 206 LLEQMVTQGIAPTVVTYNILL 226
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ P +YN L+ CK + L + D+M S + PN+VTYT LID +
Sbjct: 101 LFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCV-PNVVTYTTLIDGL 159
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ A ++ + G P+ Y+ ++ G+
Sbjct: 160 SKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 194
>gi|357499031|ref|XP_003619804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494819|gb|AES76022.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 344
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD+ TY+ L+ C L ++M A I P++ T+ I +D C
Sbjct: 76 MVAKRISPDVITYSALISGFCIVGKLNDTIGLFNKMTAE-NINPDVYTFNISVDAFCKEG 134
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++S + G KP YNT+M GY
Sbjct: 135 RVKEAKYVLSMMMKHGIKPSVVTYNTLMNGY 165
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I + PD++TY +K LC+ L + + G ++ TYT++I C+
Sbjct: 234 ILDGIRPDMYTYTIFIKGLCQSGKLKDARKVFEDLLVK-GYNLDVYTYTVMIQGFCDKGL 292
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ L+S + D+G PD +Y ++
Sbjct: 293 FKEALALLSKMEDNGCIPDAKIYEIVI 319
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 22/85 (25%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPDI TYN ++ GI+P++ TYTI I +C + L++A
Sbjct: 225 PPDIITYNSILD----------------------GIRPDMYTYTIFIKGLCQSGKLKDAR 262
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ L G+ D + Y +++G+
Sbjct: 263 KVFEDLLVKGYNLDVYTYTVMIQGF 287
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ Y+ ++ +CK + + ++ +M A I P+++TY+ LI C L
Sbjct: 44 KLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKR-ISPDVITYSALISGFCIVGKLN 102
Query: 64 EAMRLVSALSDSGFKPDCFVYN 85
+ + L + ++ PD + +N
Sbjct: 103 DTIGLFNKMTAENINPDVYTFN 124
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++T+N V CK + +V M GIKP++VTY L++ C K +
Sbjct: 114 ENINPDVYTFNISVDAFCKEGRVKEA-KYVLSMMMKHGIKPSVVTYNTLMNGYCLVKEMN 172
Query: 64 EAMRLVSALSDSG 76
A + + ++ SG
Sbjct: 173 MAKDIFNTMNQSG 185
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 33 VDQMRASLG---------IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFV 83
V Q RA+L ++PN++ Y+ +ID +C K + +A L S + PD
Sbjct: 28 VGQTRAALQLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKRISPDVIT 87
Query: 84 YNTIMKGY 91
Y+ ++ G+
Sbjct: 88 YSALISGF 95
>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 567
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L P+ FTY+ L++ K R + +D++ A G +PNLV+Y +L+ +C
Sbjct: 193 LMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGG-QPNLVSYNVLLTGLCKEG 251
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EA+RL L GF P+ YN +++
Sbjct: 252 RIEEAIRLFKNLPSKGFSPNVVSYNILLR 280
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ L+ LCK + V +M S GI P+ +YT L++++C N+ AM+
Sbjct: 95 PDVVQATQLLYDLCKSNKMKKAIR-VMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQ 153
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + DSG+ + YNT++KG
Sbjct: 154 LVEKMEDSGYPANTVTYNTLVKG 176
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TYN LVK LC +L F+D++ G+ PN TY+ L++ + + EAM
Sbjct: 164 PANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQK-GLVPNAFTYSSLLEAAYKERGVNEAM 222
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL+ + G +P+ YN ++ G
Sbjct: 223 RLLDEIIAKGGQPNLVSYNVLLTG 246
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y FLV LCK ++ V++M S G N VTY L+ +C NL ++++
Sbjct: 130 PDAASYTFLVNHLCKRGNVGYAMQLVEKMEDS-GYPANTVTYNTLVKGLCMHGNLNKSLQ 188
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L G P+ F Y+++++
Sbjct: 189 FLDRLMQKGLVPNAFTYSSLLEA 211
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK LP P++ +YN L++ LC + +M P++VTY ILI ++
Sbjct: 259 LFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGR-ERSPSIVTYNILIGSL 317
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +A++++ + FKP YN I+
Sbjct: 318 AFHGKIEQALQVIDEMMMGPFKPTATSYNPII 349
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ +YN L+ LCK + + S G PN+V+Y IL+ ++C
Sbjct: 228 IIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNL-PSKGFSPNVVSYNILLRSLCYEG 286
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
EA L++ ++ P YN ++
Sbjct: 287 RWEEANELLAEMNGRERSPSIVTYNILI 314
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y +V CLCK + + + +M G P+ TY+ LI +C L EAM + L
Sbjct: 414 YKGVVSCLCKKGNTYPAFLLLYEM-TKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLL 472
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+ ++PD +N ++ G+
Sbjct: 473 EEDHYRPDIDNFNALILGF 491
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY LV C+ T F ++M + GI+PN+ TYT+LID C + E M
Sbjct: 293 PDVPTYTVLVAAFCEVGKETEALKFFEEMVEN-GIEPNVYTYTVLIDYFCKVGKMDEGME 351
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++S + + G +N ++ GY
Sbjct: 352 MLSTMLEKGLVSSVVPFNALIDGY 375
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + + F+DQM +S G +PN+VTYT I C L EA
Sbjct: 573 PTVHTYTILIEEILRESDFDRANMFLDQMISS-GCQPNVVTYTAFIKAYCRQGRLLEAEE 631
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + + G D F+Y+ ++ Y
Sbjct: 632 MVVKIKEEGILLDSFIYDVLVNAY 655
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P++ TYN L+ LCK R + + + + + G P+ T+ ID +C + +
Sbjct: 430 KLSPNLVTYNTLIHGLCKARVVDSAWR-LHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQ 488
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ +L + + + F+Y ++ GY
Sbjct: 489 AHQVFESLKEKHAEANEFLYTALIDGY 515
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ C+ +S+ +++M + + PNLVTY LI +C + + A R
Sbjct: 398 PNSRTYNELICGFCRKKSMDRAMALLNKMYEN-KLSPNLVTYNTLIHGLCKARVVDSAWR 456
Query: 68 LVSALSDSGFKPD 80
L + GF PD
Sbjct: 457 LHHLMIKDGFVPD 469
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P+ T+N L+ L K + + VD M KP + TYTILI+ +
Sbjct: 531 MLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVM-GKFDAKPTVHTYTILIEEILRES 589
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A + + SG +P+ Y +K Y
Sbjct: 590 DFDRANMFLDQMISSGCQPNVVTYTAFIKAY 620
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+K LCK L+ + + M+ S GI P+ + L+ + C EA+R
Sbjct: 739 PNVNTYSKLIKGLCKVEHLSLAFRLFNHMKES-GISPSENIHNSLLSSCCKLGMHEEALR 797
Query: 68 LVSALSD 74
L+ ++ +
Sbjct: 798 LLDSMME 804
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTY L+ CK L Y + M G N V+YT LI C + EA+ L
Sbjct: 224 DSFTYTSLILGYCKIHELGDAYKVFEIMPQE-GCLRNEVSYTNLIHGFCEVGKIDEALEL 282
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD Y ++ +
Sbjct: 283 FFQMKEDGCFPDVPTYTVLVAAF 305
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L + +N L+ CK + +D M+ + + PN TY LI C K
Sbjct: 356 MLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLN-KVCPNSRTYNELICGFCRKK 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ AM L++ + ++ P+ YNT++ G
Sbjct: 415 SMDRAMALLNKMYENKLSPNLVTYNTLIHG 444
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+Y L+ C+ + QM+ G P++ TYT+L+ C EA++
Sbjct: 262 SYTNLIHGFCEVGKIDEALELFFQMKED-GCFPDVPTYTVLVAAFCEVGKETEALKFFEE 320
Query: 72 LSDSGFKPDCFVYNTIM 88
+ ++G +P+ + Y ++
Sbjct: 321 MVENGIEPNVYTYTVLI 337
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
G PN+ TY+ LI +C ++L A RL + + +SG P ++N+++
Sbjct: 736 GCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLL 783
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ + CLCK + + + ++ + N YT LID C + +A
Sbjct: 468 PDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHA-EANEFLYTALIDGYCKAEKFSDAHL 526
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P+ +N ++ G
Sbjct: 527 LFKRMLFEGCFPNSITFNVLLDG 549
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 3 FKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
F+++P PD+FTY+ L+ LCK R + +D+M+A G PN VT+ +LID +
Sbjct: 221 FREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAE-GCLPNPVTFNVLIDALS 279
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A +LV + G P+ YNT++ G
Sbjct: 280 KNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 312
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+ Y+ L+ L K +M A G KPN+V Y ID +C + EA ++
Sbjct: 374 YIYSSLISGLFKEGKSENAVRLWKEM-AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQ 432
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ GF P+ F Y+++MKG+
Sbjct: 433 EMLSKGFLPNAFTYSSLMKGF 453
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR-ASLGIKPNLVTYTILIDNVCNT 59
++ + L PD+ Y+ ++K LC S+ +M+ +P++VTY IL + +C
Sbjct: 504 MLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQ 563
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
NL A+ L++++ D G PD N ++
Sbjct: 564 DNLTRAIDLLNSMLDEGCDPDSLTCNIFLE 593
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ K P+ FTY+ L+K K S + + + M S ++ N+V ++L++ +C +
Sbjct: 434 MLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMM--SQDMRHNVVCCSVLLNGLCES 491
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
LREA+ + + + G KPD Y++++KG
Sbjct: 492 GRLREALTVWTHMLGEGLKPDVVAYSSMIKG 522
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ L K L+ VD M G PN VTY LI +C L +A+
Sbjct: 266 PNPVTFNVLIDALSKNGDLSRAAKLVDNMFLK-GCVPNEVTYNTLIHGLCLKGKLDKALS 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + S P+ Y TI+ G
Sbjct: 325 LLEKMVSSKCVPNQVTYGTIING 347
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIK---PNLVTYTILIDNVCNTK 60
K P++ TYN ++K LCK L + VD R + +K P++ TY+ L++ +C +
Sbjct: 192 KGFQPNLLTYNLIIKALCK---LGQIDRAVDTFR-EMPLKNCNPDVFTYSTLMNGLCKER 247
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA+ L+ + G P+ +N ++
Sbjct: 248 RVDEAVFLLDEMQAEGCLPNPVTFNVLI 275
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC L + +++M +S + PN VTY +I+ + + + +
Sbjct: 301 PNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCV-PNQVTYGTIINGLVKQRRAEDGVH 359
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ + G K + ++Y++++ G
Sbjct: 360 ILMSMEERGQKANEYIYSSLISG 382
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
S G +PNL+TY ++I +C + A+ + PD F Y+T+M G
Sbjct: 191 SKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNG 242
>gi|195650415|gb|ACG44675.1| hypothetical protein [Zea mays]
Length = 558
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + T++ +V CLCK +T +D M LG +P + TY L+ +C
Sbjct: 203 MVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAM-LGLGCEPTIRTYNSLVGGLCYVG 261
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L+ L DS PD + + ++ G+
Sbjct: 262 RLEEALELLKKLKDSPLTPDIYTFTIVLDGF 292
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN LV LC L + +++ S + P++ T+TI++D C EA
Sbjct: 245 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDS-PLTPDIYTFTIVLDGFCKVGRTEEATA 303
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G P F YN ++ G
Sbjct: 304 IFHDAIGMGLSPTTFTYNALLNG 326
>gi|212275248|ref|NP_001130560.1| uncharacterized protein LOC100191659 [Zea mays]
gi|194689480|gb|ACF78824.1| unknown [Zea mays]
Length = 558
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + T++ +V CLCK +T +D M LG +P + TY L+ +C
Sbjct: 203 MVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAM-LGLGCEPTIRTYNSLVGGLCYVG 261
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ L+ L DS PD + + ++ G+
Sbjct: 262 RLEEALELLKKLKDSPLTPDIYTFTIVLDGF 292
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN LV LC L + +++ S + P++ T+TI++D C EA
Sbjct: 245 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDS-PLTPDIYTFTIVLDGFCKVGRTEEATA 303
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G P F YN ++ G+
Sbjct: 304 IFHDAIGMGLSPTTFTYNALLNGH 327
>gi|255660980|gb|ACU25659.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 376
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + +A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGXAYNLVKELLDK-GLNPGVITYSMLMKGLCLDHKVEKALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV C + + ++ G+ Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCXNGYIDKSLHVLEMAEQKGGVLXAF-AYSAMINGLCKEANLBRAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNAHVYNTLING 173
>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
Length = 554
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + TYN L+ LCK L NF DQM S P+++TY L+ +C + EA+
Sbjct: 372 PPTVVTYNILINGLCKYGLLDRAINFFDQM-VSHNCLPDIITYNTLLAALCKEGMVDEAL 430
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ +L+D+ P YN ++ G
Sbjct: 431 HLLHSLNDTRCSPGLITYNIVIDG 454
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD TYN +++C+ F DQ+R G L+TYT+LI+ VC +A
Sbjct: 232 PPDAITYNTILRCMFDHGGFDQAIGFWKDQLRK--GCPAYLITYTVLIELVCKHCGTVQA 289
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ ++ G PD YN+++
Sbjct: 290 MEVLEDMAIEGCYPDIVTYNSLV 312
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + + + + + P L+TY I+ID + + +AM
Sbjct: 408 PDIITYNTLLAALCKEGMVDEALHLLHSLNDTR-CSPGLITYNIVIDGLAKKGCMEKAME 466
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + GF PD + T+ G
Sbjct: 467 LYGEMIERGFAPDDITHRTLFWG 489
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
L++ L K S + M S GI P+++TY +L+ +C L+ A+ L+ +S S
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGI-PDIITYNMLVGGLCKKGLLKTAIELLDEMSLS 229
Query: 76 GFKPDCFVYNTIMK 89
G PD YNTI++
Sbjct: 230 GCPPDAITYNTILR 243
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 8 PDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
PDI TYN LV CK + +YN + S G+ PN VTY L+ ++C
Sbjct: 303 PDIVTYNSLVNYTCKQGKYEDTALIIYNLL-----SHGMGPNTVTYNTLLHSLCTHGYWD 357
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
E ++ ++ + P YN ++ G
Sbjct: 358 EVDEILLIMNTTSQPPTVVTYNILING 384
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY L++ +CK ++ M A G P++VTY L++ C
Sbjct: 264 KGCPAYLITYTVLIELVCKHCGTVQAMEVLEDM-AIEGCYPDIVTYNSLVNYTCKQGKYE 322
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+ ++ L G P+ YNT++
Sbjct: 323 DTALIIYNLLSHGMGPNTVTYNTLL 347
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + + PD YN + CLC +F+ +MR ++G+KP+ TY +I + C
Sbjct: 545 LMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMR-NMGLKPDQSTYNTMIVSHCRKG 603
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++L+ + S KP+ YNT++ G
Sbjct: 604 ETAKALKLLHEMKMSSIKPNLITYNTLVAG 633
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LP D+ YN LV C+ + +D M+ + G+ PN+ TYT I C TK + EA
Sbjct: 200 LPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEA-GVDPNVATYTPFIVYYCRTKGVEEA 258
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + +G D + ++ G
Sbjct: 259 FDLYEGMVRNGVLLDVVTLSALVAG 283
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + +M+ S IKPNL+TY L+ + T + +A
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMS-SIKPNLITYNTLVAGLFGTGAVEKA 643
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ + +GF P + +++
Sbjct: 644 KYLLNEMVSAGFSPSSLTHRRVLQA 668
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKPNLVTYTILIDNVCNTKNLREAM 66
D+ TY L+ L K V D +R +L + PN VTYT+LID +C N+ EA
Sbjct: 343 DLVTYTALMDWLGKQGKTDEVK---DTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAE 399
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + P+ +++++ G+
Sbjct: 400 QVLLEMEEKSISPNVVTFSSVINGF 424
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+I T+N L+ L + + +M S G++PN +TY IL
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKS-GLEPNNLTYDILATGHGKQS 813
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N EAMRL + GF P YN ++ +
Sbjct: 814 NKVEAMRLYCEMVGKGFVPKVSTYNALISDF 844
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY L+ LCK ++ + +M I PN+VT++ +I+ L +A
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK-SISPNVVTFSSVINGFVKRGLLDKA 433
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ Y T++ G+
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGF 459
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ T + LV LC+ + Y +M +G PN VTY LID++ +E + L
Sbjct: 273 DVVTLSALVAGLCRDGRFSEAYALFREMD-KVGAAPNHVTYCTLIDSLAKAGRGKELLSL 331
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G D Y +M
Sbjct: 332 LGEMVSRGVVMDLVTYTALM 351
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 6 LPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L DI YN L++ LC R T V +++M S GI P+ +T+ LI C + +L
Sbjct: 690 LHADITVYNTLLQVLCYHGMTRKATVV---LEEMLGS-GIAPDTITFNALILGHCKSSHL 745
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + P+ +NT++ G
Sbjct: 746 DNAFATYAQMLHQNISPNIATFNTLLGG 773
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ T++ ++ K R L +M GI PN+VTY LID +
Sbjct: 408 KSISPNVVTFSSVINGFVK-RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQD 466
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + G K + F+ ++++ G
Sbjct: 467 AALEVYHDMLCEGVKVNKFIVDSLVNG 493
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K +L + +M G PNLVTY I+I +N A
Sbjct: 478 LSPDTFTYSVIINCLGKAGNLAAAHWLFCEM-VEHGCVPNLVTYNIMIALQAKARNYEMA 536
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++L + ++GF+PD Y+ +M+
Sbjct: 537 LKLYHDMQNAGFQPDKVTYSIVMEA 561
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C L N ++M+ +G +P+ VTY LID + AM
Sbjct: 410 PNVVTYNRLIHCYGCANYLKEALNVFNEMQ-EVGCEPDRVTYCTLIDIHAKAGFIDVAMS 468
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + ++G PD F Y+ I+
Sbjct: 469 MYKRMQEAGLSPDTFTYSVII 489
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + R ++ ++QM G +PN+VTY LI L+EA+ +
Sbjct: 376 DGHTYTTMVGILGRARRFDSISKLLEQMVKD-GCQPNVVTYNRLIHCYGCANYLKEALNV 434
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + + G +PD Y T++
Sbjct: 435 FNEMQEVGCEPDRVTYCTLI 454
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 515 PNLVTYNIMIALQAKARNYEMALKLYHDMQNA-GFQPDKVTYSIVMEALGHCGYLEEAES 573
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + PD VY ++
Sbjct: 574 VFVEMQQKNWVPDEPVYGLLV 594
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILI 53
L P++ T N L+ + L YN V M A LG++P+L TYT+L+
Sbjct: 618 LLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVA-LGLRPSLQTYTLLL 664
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic; AltName: Full=Protein PROTON GRADIENT
REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ YN ++ L K L ++M+ S GI P+L TY LI N+ + EA
Sbjct: 992 LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +G +P+ F +N +++GY
Sbjct: 1052 GKIYNEIQRAGLEPNVFTFNALIRGY 1077
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ R L +V F +M G P++VT+TIL+D +C N EA
Sbjct: 326 PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKD-GHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D G P+ YNT++ G
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICG 407
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ LV LCK + ++ +D MR GI PNL TY LI + L +A+
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQ-GILPNLHTYNTLICGLLRVHRLDDALE 419
Query: 68 LVSALSDSGFKPDCFVY 84
L + G KP + Y
Sbjct: 420 LFGNMESLGVKPTAYTY 436
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P + TY+ L+ L K R + +V + +M +LG+KPN+ T+TI I +
Sbjct: 214 MILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEME-TLGLKPNVYTFTICIRVLGRAG 272
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA ++ + D G PD Y ++
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLI 300
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+++T+ ++ L + + Y + +M G P++VTYT+LID +C + L A
Sbjct: 254 LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE-GCGPDVVTYTVLIDALCTARKLDCA 312
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + KPD Y T++
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLL 335
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + TYN L+ L K + + M G PN +T+ L D +C +
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM-VQKGCPPNTITFNTLFDCLCKNDEVTL 626
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A++++ + D G PD F YNTI+ G
Sbjct: 627 ALKMLFKMMDMGCVPDVFTYNTIIFG 652
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ K +M G++P+L TY++L+D +C + E +
Sbjct: 924 PNCAIYNILINGFGKAGEADAACALFKRM-VKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +SG PD YN I+ G
Sbjct: 983 YFKELKESGLNPDVVCYNLIING 1005
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LC R L ++M+ KP+ VTY L+D + ++L +
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH-KPDRVTYITLLDRFSDNRDLDSVKQ 349
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
S + G PD + ++
Sbjct: 350 FWSEMEKDGHVPDVVTFTILV 370
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++KC K + + +M + G +P+++ LI+ + + EA
Sbjct: 499 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMEN-GCEPDVIVVNSLINTLYKADRVDEA 557
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + + KP YNT++ G
Sbjct: 558 WKMFMRMKEMKLKPTVVTYNTLLAG 582
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N ++ L K ++ + + + P TY LID + + L EA +L
Sbjct: 857 THNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEG 916
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ D G +P+C +YN ++ G+
Sbjct: 917 MLDYGCRPNCAIYNILINGF 936
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P +TY + K + ++M+ GI PN+V + ++ REA
Sbjct: 429 VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK-GIAPNIVACNASLYSLAKAGRDREA 487
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ L D G PD YN +MK Y
Sbjct: 488 KQIFYGLKDIGLVPDSVTYNMMMKCY 513
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP+ T+N L CLCK +T + +M +G P++ TY +I +
Sbjct: 599 MVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM-MDMGCVPDVFTYNTIIFGLVKNG 657
Query: 61 NLREAM 66
++EAM
Sbjct: 658 QVKEAM 663
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+++ CK +++ ++ LG++P L TY +LI + + A + + +
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 76 GFKPDCFVYNTIMKGY 91
G PD YN ++ Y
Sbjct: 815 GCIPDVATYNFLLDAY 830
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
++YN L+ L K R T +M G +P+L TY+ L+ + +++ M L+
Sbjct: 189 YSYNGLIHLLLKSRFCTEAMEVYRRMILE-GFRPSLQTYSSLMVGLGKRRDIDSVMGLLK 247
Query: 71 ALSDSGFKPDCFVY 84
+ G KP+ + +
Sbjct: 248 EMETLGLKPNVYTF 261
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+G+ P+ VTY +++ + EA++L+S + ++G +PD V N+++
Sbjct: 497 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLI 545
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD FTY L+ ++ + D+M G+ PN+VTY LI+ +C ++
Sbjct: 740 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM-LRRGLVPNIVTYNALINGLCKSE 798
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ A RL L G P+ YNT++ GY
Sbjct: 799 NVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 829
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+I TYN L+ LCK ++ ++ G+ PN+VTY LID C
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGYCKIG 833
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A +L + + G P Y+ ++ G
Sbjct: 834 NMDAAFKLKDKMIEEGISPSVVTYSALING 863
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ TYN L+ CK ++ + D+M GI P++VTY+ LI+ +C ++
Sbjct: 813 KGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEE-GISPSVVTYSALINGLCKHGDIE 871
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+M+L++ + +G Y T+++G
Sbjct: 872 RSMKLLNQMIKAGVDSKLIEYCTLVQG 898
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ C+ + +D+M LG+K NL LI+ C + EA
Sbjct: 328 LVPDERAYGVLIDGYCRTGKIDDAVRLLDEM-LRLGLKTNLFICNSLINGYCKRGEIHEA 386
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + D KPD + YNT++ GY
Sbjct: 387 EGVITRMVDWNLKPDSYSYNTLLDGY 412
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F + +V CK + FV +M +LG++PN+VTY LI+ + ++ A
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKME-NLGVEPNIVTYHSLINGYVSLGDVEAAKG 282
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ +S+ G + Y ++KGY
Sbjct: 283 VLKFMSEKGVSRNVVTYTLLIKGY 306
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD ++YN L+ C+ + +N D+M GI+P ++TY L+ +C +A
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE-GIEPTVLTYNTLLKGLCRVGAFDDA 456
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G PD Y+T++ G
Sbjct: 457 LQIWHLMMKXGVAPDEVGYSTLLDG 481
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N ++ LCK + D+M+ LG P+ +TY LID C N+ +A ++ A
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ P +YN+++ G
Sbjct: 568 MEREXISPSIEMYNSLISG 586
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ TY L+K CK + + M+ + P+ Y +LID C T +
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+RL+ + G K + F+ N+++ GY
Sbjct: 350 DAVRLLDEMLRLGLKTNLFICNSLINGY 377
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P I YN L+ L K R L + + +M G+ PN+VTY LID C L
Sbjct: 571 EXISPSIEMYNSLISGLFKSRRLVEXTDLLTEM-GIRGLTPNIVTYGALIDGWCKEGMLD 629
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A ++++G + + +T++ G
Sbjct: 630 KAFSSYFEMTENGLSANIIICSTMVSG 656
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L ++F N L+ CK + + +M +KP+ +Y L+D C + EA
Sbjct: 363 LKTNLFICNSLINGYCKRGEIHEAEGVITRM-VDWNLKPDSYSYNTLLDGYCREGHTSEA 421
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G +P YNT++KG
Sbjct: 422 FNLCDKMLQEGIEPTVLTYNTLLKG 446
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
PN + Y I I +C T + +A R S LS GF PD F Y T++ GY
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGY 759
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TYN L+K LC+ + M G+ P+ V Y+ L+D + +
Sbjct: 428 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM-MKXGVAPDEVGYSTLLDGLFKME 486
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N A L + GF +NT++ G
Sbjct: 487 NFEGASTLWKDILARGFTKSRITFNTMISG 516
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD Y+ L+ L K + + A G + +T+ +I +C + EA
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILAR-GFTKSRITFNTMISGLCKMGKMVEA 526
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G PD Y T++ GY
Sbjct: 527 EEIFDKMKDLGCSPDGITYRTLIDGY 552
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L+ CK L ++ +M + G+ N++ + ++ + +
Sbjct: 606 RGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTEN-GLSANIIICSTMVSGLYRLGRID 664
Query: 64 EAMRLVSALSDSGFKPD--CFVYNTI 87
EA L+ + D GF PD CF+ + I
Sbjct: 665 EANLLMQKMVDHGFFPDHECFLKSDI 690
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 8 PDIFTYNFLVKCLCKCRS-LTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TYN ++K L + +S ++ V+++ ++M+ S GI P+ TY+ILID C T + +AM
Sbjct: 368 PNVVTYNTIIKALFESKSRVSEVFSWFERMKGS-GISPSPFTYSILIDGFCKTNRIEKAM 426
Query: 67 RLVSALSDSGFKP 79
L+ + + GF P
Sbjct: 427 MLLEEMDEKGFPP 439
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++ YN L+ L + L + +M+ G P++ +Y I+++ + T AM
Sbjct: 509 PNVYAYNALMSGLARACMLDEALTTMRKMQEH-GCLPDINSYNIILNGLAKTGGPHRAME 567
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + +S KPD YNT++
Sbjct: 568 MLTNMKNSTIKPDAVSYNTVL 588
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L++ L K + Y+F +M+ KP+ V +I+ + L + ++
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFYHEMQRE-DCKPDTVVMNNMINFLGKAGRLDDGLK 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + S P+ YNTI+K
Sbjct: 357 LFEEMGVSHCIPNVVTYNTIIKA 379
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY+ L+ CK + +++M+ + G++P YT++I N+ A+
Sbjct: 228 PDTVTYSALISAFCKLGRQDSAIRLLNEMKEN-GMQPTAKIYTMIISLFFKLDNVHGALS 286
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +PD F Y +++G
Sbjct: 287 LFEEMRYMYCRPDVFTYTELIRG 309
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++K L K L N D+M + LG PN+ Y L+ + L EA+ + +
Sbjct: 479 YAVMIKHLGKAGRLDDAINLFDEM-SKLGCTPNVYAYNALMSGLARACMLDEALTTMRKM 537
Query: 73 SDSGFKPDCFVYNTIMKG 90
+ G PD YN I+ G
Sbjct: 538 QEHGCLPDINSYNIILNG 555
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN ++ L K + M+ S IKP+ V+Y ++ + + EA
Sbjct: 544 PDINSYNIILNGLAKTGGPHRAMEMLTNMKNST-IKPDAVSYNTVLSALSHAGMFEEAAE 602
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ GF+ D Y++I++
Sbjct: 603 LMKEMNALGFEYDLITYSSILEA 625
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ P YN ++ L V+ ++M P+ VTY+ LI C
Sbjct: 188 RKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQD 247
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+RL++ + ++G +P +Y I+
Sbjct: 248 SAIRLLNEMKENGMQPTAKIYTMII 272
>gi|357130244|ref|XP_003566760.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Brachypodium distachyon]
Length = 579
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C+ L + M G++P+LV++T+L+D +C L +A R
Sbjct: 247 PDVVTYNTLLSGYCRRGKLQDALHLFGVMPPR-GVEPDLVSHTVLMDGLCKAGRLNDARR 305
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + SG PD Y+ ++ GY
Sbjct: 306 MFDRMVHSGVSPDAIAYSVLIAGY 329
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD +N L+ L + ++ M A ++PN T+ IL+ +C ++ A
Sbjct: 176 PPDTVAFNALLAALSRAGRFDELWAARAVM-ARAEVRPNTHTFNILVTALCRGEDAERAQ 234
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + GF+PD YNT++ GY
Sbjct: 235 GFLEELEEQGFEPDVVTYNTLLSGY 259
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ T+N LV LC+ F++++ G +P++VTY L+ C L++
Sbjct: 209 EVRPNTHTFNILVTALCRGEDAERAQGFLEELEEQ-GFEPDVVTYNTLLSGYCRRGKLQD 267
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + G +PD + +M G
Sbjct: 268 ALHLFGVMPPRGVEPDLVSHTVLMDG 293
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ ++ L+ LCK L D+M S G+ P+ + Y++LI CN + +REA
Sbjct: 282 PDLVSHTVLMDGLCKAGRLNDARRMFDRMVHS-GVSPDAIAYSVLIAGYCNEQRVREARL 340
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + SG + F +++ +
Sbjct: 341 LLMEMVGSGLSSEGFALRAVIESH 364
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ CLC+C S+ + +M +S ++P+ TY L+ +C +
Sbjct: 422 PSLEMYNMILDCLCQCDSVDDALDVKVEM-SSREVRPDFHTYQALVTCLCRLGKSLDGKS 480
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + +SG +P+ + ++ G+
Sbjct: 481 VMAEMIESGLQPNEAICTALVCGF 504
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD TY LV CLC+ + + +M S G++PN T L+ C L
Sbjct: 453 REVRPDFHTYQALVTCLCRLGKSLDGKSVMAEMIES-GLQPNEAICTALVCGFCKEGYLD 511
Query: 64 EAMRLVSALSDSGFKPDCF-VYNTIMKGY 91
A ++ A F+ C YN +M+ Y
Sbjct: 512 RAELILKAFV-LDFQLHCNESYNALMRAY 539
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 8 PDIFTYNFLVKCLCKCRS-LTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TYN ++K L + +S ++ V+++ ++M+ S GI P+ TY+ILID C T + +AM
Sbjct: 368 PNVVTYNTIIKALFESKSRVSEVFSWFERMKGS-GISPSPFTYSILIDGFCKTNRIEKAM 426
Query: 67 RLVSALSDSGFKP 79
L+ + + GF P
Sbjct: 427 MLLEEMDEKGFPP 439
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L++ L K + Y+F +M+ G KP+ V +I+ + L + ++
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFYHEMQRE-GCKPDTVVMNNMINFLGKAGRLDDGLK 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + S P+ YNTI+K
Sbjct: 357 LFEEMGVSHCIPNVVTYNTIIKA 379
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++ YN L+ L + L + +M+ G P++ +Y I+++ + T AM
Sbjct: 509 PNVYAYNALMSGLARACMLDEALTTMRKMQEH-GCLPDINSYNIILNGLAKTGGPHRAME 567
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + +S KPD YNT++
Sbjct: 568 MLTNMKNSTIKPDAVSYNTVL 588
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY+ L+ CK + +++M+ + G++P YT++I N+ A+
Sbjct: 228 PDTVTYSALISAFCKLGRQDSAIRLLNEMKEN-GMQPTAKIYTMIISLFFKLDNVHGALS 286
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +PD F Y +++G
Sbjct: 287 LFEEMRYMYCRPDVFTYTELIRG 309
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++K L K L N D+M + LG PN+ Y L+ + L EA+ + +
Sbjct: 479 YAVMIKHLGKAGRLDDAINLFDEM-SKLGCTPNVYAYNALMSGLARACMLDEALTTMRKM 537
Query: 73 SDSGFKPDCFVYNTIMKG 90
+ G PD YN I+ G
Sbjct: 538 QEHGCLPDINSYNIILNG 555
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN ++ L K + M+ S IKP+ V+Y ++ + + EA
Sbjct: 544 PDINSYNIILNGLAKTGGPHRAMEMLTNMKNST-IKPDAVSYNTVLSALSHAGMFEEAAE 602
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ GF+ D Y++I++
Sbjct: 603 LMKEMNALGFEYDLITYSSILEA 625
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ P YN ++ L V+ ++M +P+ VTY+ LI C
Sbjct: 188 RKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQD 247
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+RL++ + ++G +P +Y I+
Sbjct: 248 SAIRLLNEMKENGMQPTAKIYTMII 272
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+++Y+ L+ C+ + +MR S GI PN+ +Y+ILID
Sbjct: 302 VFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNS-GILPNIYSYSILIDGF 360
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + +A+ + + +SG PD + Y+ ++ G+
Sbjct: 361 CKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGF 395
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ P+I++Y+ L+ CK + ++M+ S GI P++ +Y+ILID
Sbjct: 337 VFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNS-GILPDVYSYSILIDGF 395
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C ++ A++ ++ + F P F Y +++KGY
Sbjct: 396 CRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGY 430
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y LV C +T D+M + G PN+VTYT I+ +A +
Sbjct: 593 PDQIAYTSLVAGFCNTGEMTRARALFDEM-SREGCSPNVVTYTCFINEYLKLNKNNQAHK 651
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD +Y ++ +
Sbjct: 652 LYEKMKERGVYPDQILYTMLIAAF 675
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN----TKNLRE 64
+I + NFL+KCL + + V + ++ G +PN+ TYTI+++ C + ++R
Sbjct: 170 NIMSCNFLLKCLVEDNRVDGV-RLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRR 228
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++ + SG P+ Y T +KG
Sbjct: 229 ASEILGKIYMSGETPNVVTYGTYIKG 254
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ Y+ L+ C K S V F+ + +GI N+ TYTILI+ + + A
Sbjct: 523 PDVVNYSTLISCFAKRLNSEKAVMLFIKMTK--VGITFNVKTYTILINLFISDCKMDVAY 580
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
RL + +S PD Y +++ G+
Sbjct: 581 RLFKGMKESRVYPDQIAYTSLVAGF 605
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 32/84 (38%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ C + D+M+ PN+V YT LI++ +A +
Sbjct: 663 PDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEK 722
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G C ++ + +
Sbjct: 723 LYEEMRAKGLSRLCSSEGSVSESW 746
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY + K + ++M+ G+ P+ + YT+LI CNT + A
Sbjct: 628 PNVVTYTCFINEYLKLNKNNQAHKLYEKMKER-GVYPDQILYTMLIAAFCNTGEMNRAEA 686
Query: 68 LVSALSDSGF-KPDCFVYNTIMKGY 91
L + G P+ +Y ++ Y
Sbjct: 687 LFDEMKQEGRCTPNVVMYTCLINSY 711
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +++TYN L+ LCK +L + +M A+ G + ++ TYT LID +C +
Sbjct: 491 KGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAA-GHRTDVYTYTTLIDTLCKSGEFD 549
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ + D G KP YN +M G+
Sbjct: 550 RAHNMLQEMLDKGIKPSIATYNVLMNGF 577
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++TY L+ LCK +N + +M GIKP++ TY +L++ C + + +L
Sbjct: 531 DVYTYTTLIDTLCKSGEFDRAHNMLQEMLDK-GIKPSIATYNVLMNGFCMSGRVEGGKKL 589
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + + +P+ YN++MK Y
Sbjct: 590 LEWMLEKNVRPNVVTYNSLMKQY 612
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TY L LCK + + +M + G++ N+ TY LI+ +C
Sbjct: 453 MVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEM-CNKGLELNVYTYNSLINGLCKFG 511
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
NL +AMR+++ + +G + D + Y T++
Sbjct: 512 NLEQAMRIMTEMEAAGHRTDVYTYTTLI 539
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L D+ TY L+ CK ++ + ++M + PN+VTYT L D +C
Sbjct: 418 MVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEM-VGRRVAPNVVTYTALSDGLCKQG 476
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++R A L+ + + G + + + YN+++ G
Sbjct: 477 DVRAANELLHEMCNKGLELNVYTYNSLING 506
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TY +V C L +D+M A+ G++ N YT +I +CN + +A+
Sbjct: 284 PPDVVTYGTMVHGYCVRGELENAVKLLDEM-AAKGLESNATVYTSVIALLCNKGQVSDAL 342
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R++ ++ G D V+ T++ G+
Sbjct: 343 RVLEDMTMHGVALDAVVFTTVISGF 367
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TYN L+K C +++ + M S + PN TY ILI C +
Sbjct: 593 MLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMH-SQEVAPNENTYNILIKGHCKAR 651
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N++EA+ + + G + Y+ +++
Sbjct: 652 NMKEALYFHQEMIEKGLRLTASSYSALIR 680
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I TYN L+ C + ++ M ++PN+VTY L+ C KN++
Sbjct: 561 KGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEK-NVRPNVVTYNSLMKQYCIDKNMK 619
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + P+ YN ++KG+
Sbjct: 620 STTEIYKGMHSQEVAPNENTYNILIKGH 647
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + ++ C L ++M+ G+ + VT+T LI+ +C L+EA R+
Sbjct: 356 DAVVFTTVISGFCSKGDLAAARRLFEEMQKR-GLAADRVTHTALINGLCRAGELKEADRV 414
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D G D Y ++ GY
Sbjct: 415 LQEMVDKGLDVDVVTYTVLIDGY 437
>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
Length = 461
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ ++L P+++TYN ++ LCK L + M AS PN +TY LI +C
Sbjct: 322 LLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKM 381
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L A+ L+ A++ G PD Y TI+ +
Sbjct: 382 ELERAVLLLDAMAKRGCAPDVACYGTIVAAF 412
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ L + + +M S G PN +TYTIL+ + E +
Sbjct: 259 PDVVTFNSLINGLVEDNRYHRAVTLIQEM-VSRGCDPNAITYTILLKWLARNARTDECVE 317
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L L D P+ + YNT+M
Sbjct: 318 LFQRLLDRKLAPNVYTYNTVM 338
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+TYN L + L + Y + +M G+ P++VT+ LI+ + A+
Sbjct: 224 PDIYTYNILFEGLSRHGLWRFAYKLLPRMNQD-GVLPDVVTFNSLINGLVEDNRYHRAVT 282
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + G P+ Y ++K
Sbjct: 283 LIQEMVSRGCDPNAITYTILLK 304
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN LV K R L +M A G P++ TY IL + + R A +L+
Sbjct: 191 VVTYNSLVLGFLKARRLKRGIKVFTRM-ARTGPSPDIYTYNILFEGLSRHGLWRFAYKLL 249
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
++ G PD +N+++ G
Sbjct: 250 PRMNQDGVLPDVVTFNSLING 270
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L + TY+ LV L + ++QM S+G++ + TY+++I ++C + + +A
Sbjct: 83 LRASVSTYSILVAALTAAKRNNDALELLEQME-SVGLEADKDTYSLIIHSLCKSGMVDKA 141
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
LV + PD +Y+ +++
Sbjct: 142 KVLVERMISRNCVPDARIYDPVIE 165
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y L+ LCK + ++ +M A+ G +PN TY L+D +C L A
Sbjct: 44 PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 103
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ F PD YNT+M
Sbjct: 104 VIAEARKRDFAPDVVTYNTLM 124
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + ++N ++ LC+ R L ++M PNLVTY+++ID +C + L EA +
Sbjct: 150 PTLVSFNAIITGLCRARRLADALEVFNEM-IDRDFHPNLVTYSVVIDGLCKSDQLDEAQQ 208
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G +PD Y ++ G+
Sbjct: 209 LLDRMVSEGCRPDLVAYTPLVLGF 232
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY+ ++ LCK L +D+M S G +P+LV YT L+
Sbjct: 178 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRM-VSEGCRPDLVAYTPLVLGFSAAG 236
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A+ L+ + G PD Y ++
Sbjct: 237 RLDSALGLLRRMVSQGCIPDVVTYTVVI 264
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD+ TYN L+ L + + QM G P LV++ +I +C + L
Sbjct: 111 RDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEE-GYVPTLVSFNAIITGLCRARRLA 169
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + + D F P+ Y+ ++ G
Sbjct: 170 DALEVFNEMIDRDFHPNLVTYSVVIDG 196
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y LV L + + +M S G P++VTYT++ID +C + +A
Sbjct: 220 PDLVAYTPLVLGFSAAGRLDSALGLLRRM-VSQGCIPDVVTYTVVIDKLCKVGRVDDAHE 278
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L + P+ Y+ ++ GY
Sbjct: 279 IFRELVANKCSPNVVTYSALIGGY 302
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T + +++ LC+C + D +P++V+YT LI+ +C + A L
Sbjct: 12 TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71
Query: 72 L-SDSGFKPDCFVYNTIMKG 90
+ + G +P+ F YN ++ G
Sbjct: 72 MVAAGGCRPNAFTYNALVDG 91
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + P++ TY+ L+ C+ + + +M +PN+VTY +I +
Sbjct: 283 LVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM----ACRPNVVTYNTMIWGLSMVD 338
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + +S+ GF PD Y + +
Sbjct: 339 RNEEAYGMFREMSECGFVPDARTYRGLKRA 368
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI +N ++ CK + Y ++ + S+G PN VTYT LID C + NL
Sbjct: 169 KSAKPDIVAWNVIIHGFCKAGRVREAYEMLETL-VSMGCVPNAVTYTTLIDGFCKSGNLS 227
Query: 64 EAMRLVSALS--DSGFKPDCFVYNTIMKG 90
EA++L LS D +P+ +N ++ G
Sbjct: 228 EALQLFKVLSSRDHHAEPNVVTFNALISG 256
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L D FTY L+ LCK + V ++M G P++VTYT L+ C +L+
Sbjct: 276 RDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLRE-GCNPSVVTYTTLVHAHCKAGSLQ 334
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +++ ++ G PD Y +++G
Sbjct: 335 DAQQVIRSMVAKGIPPDVTTYTVLLEG 361
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L+ LCK L + V QM+A ++ + TYT L+D +C E R
Sbjct: 245 PNVVTFNALISGLCKADRLEHAFELVKQMKAR-DLRADTFTYTTLMDGLCKQGRTSEVSR 303
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P Y T++ +
Sbjct: 304 VFEEMLREGCNPSVVTYTTLVHAH 327
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ + + CK + + Y + M KP++V + ++I C +REA +
Sbjct: 138 DVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEM 197
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ L G P+ Y T++ G+
Sbjct: 198 LETLVSMGCVPNAVTYTTLIDGF 220
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY LV CK SL + M A GI P++ TYT+L++ + +R A
Sbjct: 315 PSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAK-GIPPDVTTYTVLLEGLFENGKVRTATE 373
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ P VY+ +++G
Sbjct: 374 FFEKILRERCPPCAVVYSALVRG 396
>gi|255660970|gb|ACU25654.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 350
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ CK + YN V ++ G+ P ++TY++L++ +C + A++
Sbjct: 171 PTIITYNTLINGFCKNKMFGEAYNLVKELLDK-GLDPGVITYSMLMEGLCFDHKVERALQ 229
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 230 LWNQVTSKGFKPDVQMHNILIHG 252
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 67 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRAVSV 125
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 126 LNGMIKSGCKPNVHVYNTLING 147
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 237 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 294
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN ++G
Sbjct: 295 RNALVIWARILRNGLEPDIISYNITLEG 322
>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia salsoloides]
Length = 410
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L D+ TYN L+ LCK L N +D+MR G+KP+ +TYT LID C
Sbjct: 259 MLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMK-GLKPDKITYTTLIDGCCKEG 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A + + D VY T++ G
Sbjct: 318 DLETAFEHRKRMIQENIRLDDVVYTTLISG 347
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D + G++P++V++ L++ +L E
Sbjct: 125 PASLYFFNILMHRFCKEGEIRVARSVFDAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGF 183
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ SG +PD + Y+ ++ G
Sbjct: 184 RLKSAMHASGVEPDVYTYSVLING 207
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ T+ L+ CK + QM S + +L+TY LI +C
Sbjct: 224 MLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM-LSQSLSADLITYNTLIYGLCKKG 282
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L++A L+ + G KPD Y T++ G
Sbjct: 283 DLKQAQNLIDEMRMKGLKPDKITYTTLIDG 312
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ + L + M AS G++P++ TY++LI+ +C + A
Sbjct: 159 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVEPDVYTYSVLINGLCKESKIDGA 217
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + D G P+ + T++ G+
Sbjct: 218 NELFDEMLDKGLVPNGVTFTTLIDGH 243
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 20 LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKP 79
L K + V+ F ++ G +L + IL+ C +R A + A++ G +P
Sbjct: 103 LMKLKYFKLVWGFYKEI-LECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRP 161
Query: 80 DCFVYNTIMKGY 91
+NT+M GY
Sbjct: 162 SVVSFNTLMNGY 173
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ C +++ M S G++P++ T+T ++ +C N+ EA +
Sbjct: 280 PDVVTFNILINACCIGGRTWVAIDWLHLMVRS-GVEPSVATFTTILHALCREGNVVEARK 338
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + D G P+ +YNT+M GY
Sbjct: 339 LFDGIQDMGIAPNAAIYNTLMDGY 362
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDIFT+N L+ CK + V++M S G+ P++ TY + C + + +A
Sbjct: 663 LLPDIFTFNILIGGYCKAFDMVGAGEIVNKM-YSCGLDPDITTYNTYMHGYCRMRKMNQA 721
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ L +G PD YNT++ G
Sbjct: 722 VIILDQLISAGIVPDTVTYNTMLSG 746
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLT-TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L D FT+N ++ C+ + + F+D R +G+ P++ T+ ILI C ++
Sbjct: 626 KGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQR--IGLLPDIFTFNILIGGYCKAFDM 683
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +V+ + G PD YNT M GY
Sbjct: 684 VGAGEIVNKMYSCGLDPDITTYNTYMHGY 712
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + Y L+ K +L +M+ GI P+ V +T LID +
Sbjct: 518 MLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKER-GIYPDAVAFTALIDGLSKAG 576
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ EA + +S GF P+ F YN++++G
Sbjct: 577 NVEEAYEVFLEMSAIGFVPNNFAYNSLIRG 606
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN + C+ R + +DQ+ S GI P+ VTY ++ +C + L A
Sbjct: 698 LDPDITTYNTYMHGYCRMRKMNQAVIILDQL-ISAGIVPDTVTYNTMLSGIC-SDILDRA 755
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M L + L GF P+ N ++ +
Sbjct: 756 MILTAKLLKMGFIPNVITTNMLLSHF 781
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + L+ L K ++ Y +M A +G PN Y LI +C+ + EA++
Sbjct: 560 PDAVAFTALIDGLSKAGNVEEAYEVFLEMSA-IGFVPNNFAYNSLIRGLCDCGRVTEALK 618
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G D F +N I+ G+
Sbjct: 619 LEKEMRQKGLLSDTFTFNIIIDGF 642
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P + T+ ++ LC+ ++ D ++ +GI PN Y L+D +
Sbjct: 308 MVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQ-DMGIAPNAAIYNTLMDGYFKAR 366
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L + +G PDC +N ++ G+
Sbjct: 367 EVAQASLLYEEMRTTGVSPDCVTFNILVWGH 397
>gi|115451461|ref|NP_001049331.1| Os03g0208600 [Oryza sativa Japonica Group]
gi|26006498|gb|AAN77307.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108706773|gb|ABF94568.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547802|dbj|BAF11245.1| Os03g0208600 [Oryza sativa Japonica Group]
Length = 531
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK R + Y +D+MR I P+++TYT LI + +A
Sbjct: 249 PDLVTYNSLIDCHCKNRGVENAYKLLDEMREK-DISPDVITYTSLIGGLGLIGQPDKAKH 307
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G PD YNT ++ +
Sbjct: 308 LLKEMHELGCYPDVPAYNTAIRNF 331
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L L +S FV +MR LG++P+LVTY LID C + + A +L+
Sbjct: 221 TFNIL---LSGWKSAEDAEAFVAEMR-ELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDE 276
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ + PD Y +++ G
Sbjct: 277 MREKDISPDVITYTSLIGG 295
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LC L + + A GIK N+ +Y ILI+ C + + EA R
Sbjct: 284 PDILTYNTLMNGLCLVGQLEDATKLFESL-ADRGIKLNVFSYNILINGYCKDQKIDEAFR 342
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G KP YNT++
Sbjct: 343 LFEEMRPKGLKPSTVTYNTLI 363
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD FT+ L+ LCK + ++ M G +P+++TY L++ +C
Sbjct: 242 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHK-GKEPDILTYNTLMNGLCLVG 300
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L +A +L +L+D G K + F YN ++ GY
Sbjct: 301 QLEDATKLFESLADRGIKLNVFSYNILINGY 331
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+FTY ++ LCK T + +M + GI P++V Y+ L+D +C L+EA+
Sbjct: 145 DVFTYGMIIDSLCKDGMTTEALDMFSEMIGA-GILPDVVVYSSLMDGLCRFGRLKEALEF 203
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G D + YN+++ G
Sbjct: 204 FKEMEGRGISADVYTYNSLIHG 225
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + D++TYN L+ L + V F++ M G P+ T+TILID +C +
Sbjct: 210 RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLM-VDRGFSPDAFTFTILIDGLCKEGKVG 268
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +++ + G +PD YNT+M G
Sbjct: 269 EAQQILELMHHKGKEPDILTYNTLMNG 295
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I ++ L+ +C+ L + D++ + G++P+ + Y ILI+ +CN L EA++
Sbjct: 424 PNIEVFSILLDGMCRAGKLEEAWKQFDEISKN-GLEPDTIAYNILINGLCNKGMLSEAVK 482
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G PD +N I++
Sbjct: 483 LLWQMEEKGCLPDSITFNVIIQ 504
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L D TY L+ LCK R ++M+ + K ++ TY ++ID++C
Sbjct: 106 KGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGN--CKGDVFTYGMIIDSLCKDGMTT 163
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + S + +G PD VY+++M G
Sbjct: 164 EALDMFSEMIGAGILPDVVVYSSLMDG 190
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P TYN L+ LC+ + T +M+ + G L TY +L+D +C +L
Sbjct: 350 KGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQ-TCGQFLKLSTYCVLLDGLCKNGHLE 408
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L ++ + KP+ V++ ++ G
Sbjct: 409 EAIDLFQSIKKTEHKPNIEVFSILLDG 435
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L+ LCK L + ++ + KPN+ ++IL+D +C L EA +
Sbjct: 393 TYCVLLDGLCKNGHLEEAIDLFQSIKKTEH-KPNIEVFSILLDGMCRAGKLEEAWKQFDE 451
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+S +G +PD YN ++ G
Sbjct: 452 ISKNGLEPDTIAYNILING 470
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD YN L+ LC L+ + QM G P+ +T+ ++I N+ + EA
Sbjct: 457 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEK-GCLPDSITFNVIIQNLLKENEIHEA 515
Query: 66 MRLVSALSDSGFKPD 80
++L+ + + F PD
Sbjct: 516 IQLLEEMRNRNFSPD 530
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y+ L+ LC+ L F +M GI ++ TY LI + +E
Sbjct: 179 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGR-GISADVYTYNSLIHGLSRAGLWKEVTW 237
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + D GF PD F + ++ G
Sbjct: 238 FLNLMVDRGFSPDAFTFTILIDG 260
>gi|222624423|gb|EEE58555.1| hypothetical protein OsJ_09859 [Oryza sativa Japonica Group]
Length = 858
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK R + Y +D+MR I P+++TYT LI + +A
Sbjct: 249 PDLVTYNSLIDCHCKNRGVENAYKLLDEMREK-DISPDVITYTSLIGGLGLIGQPDKAKH 307
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G PD YNT ++ +
Sbjct: 308 LLKEMHELGCYPDVPAYNTAIRNF 331
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L L +S FV +MR LG++P+LVTY LID C + + A +L+
Sbjct: 221 TFNIL---LSGWKSAEDAEAFVAEMR-ELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDE 276
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ + PD Y +++ G
Sbjct: 277 MREKDISPDVITYTSLIGG 295
>gi|125542844|gb|EAY88983.1| hypothetical protein OsI_10467 [Oryza sativa Indica Group]
Length = 525
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C CK R + Y +D+MR I P+++TYT LI + +A
Sbjct: 243 PDLVTYNSLIDCHCKNRGVENAYKLLDEMREK-DISPDVITYTSLIGGLGLIGQPDKAKH 301
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G PD YNT ++ +
Sbjct: 302 LLKEMHELGCYPDVPAYNTAIRNF 325
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L L +S FV +MR LG++P+LVTY LID C + + A +L+
Sbjct: 215 TFNIL---LSGWKSAEDAEAFVAEMR-ELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDE 270
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ + PD Y +++ G
Sbjct: 271 MREKDISPDVITYTSLIGG 289
>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y+ LV LCK + T Y + +M A GI PNLV+Y+ L+ +C + A
Sbjct: 316 PDVHSYSILVDGLCKQGDVLTGYYMLVEM-ARNGITPNLVSYSSLLHGLCRAGRVELAFE 374
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L D GFK D VY+ ++ G
Sbjct: 375 LFKRLKDQGFKHDHIVYSIVLHG 397
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TY ++ LCK V+ F D ++ G P+ V Y+I+ID +L+EA
Sbjct: 491 PNLCTYRVIINGLCKVNKPNDVWGIFADMIKR--GYVPDTVLYSIIIDGFVKALDLQEAF 548
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + D G KP+ F Y +++ G
Sbjct: 549 RLYYKMVDEGTKPNIFTYTSLING 572
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFTY L+ LC L V M G+ P+ + YT LI C N++ A+
Sbjct: 561 PNIFTYTSLINGLCHDDKLPEVMTLFKHMIGE-GLTPDRILYTSLIACYCKRSNMKAALE 619
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G D FVY ++ G+
Sbjct: 620 IFREMETEGLSADSFVYTCLIGGF 643
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y+ ++ K L + +M G KPN+ TYT LI+ +C+ L E M
Sbjct: 526 PDTVLYSIIIDGFVKALDLQEAFRLYYKM-VDEGTKPNIFTYTSLINGLCHDDKLPEVMT 584
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD +Y +++ Y
Sbjct: 585 LFKHMIGEGLTPDRILYTSLIACY 608
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T LV + + F+D++R G+ PNL TY ++I+ +C +
Sbjct: 456 PNVVTCTILVHGFSNEGLIGEAFLFLDKVR-QFGVVPNLCTYRVIINGLCKVNKPNDVWG 514
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G+ PD +Y+ I+ G+
Sbjct: 515 IFADMIKRGYVPDTVLYSIIIDGF 538
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD + Y+ L+ C+ R L + M GI PN+VT TIL+ N
Sbjct: 414 MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICD-GICPNVVTCTILVHGFSNEG 472
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA + + G P+ Y I+ G
Sbjct: 473 LIGEAFLFLDKVRQFGVVPNLCTYRVIING 502
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY + LC+ + + + +NF+ QM G N + +I C+ + +A+
Sbjct: 246 PNAATYGTYLYGLCRAKQVKSAWNFL-QMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVE 304
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + GF PD Y+ ++ G
Sbjct: 305 VFDGMKKCGFVPDVHSYSILVDG 327
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 8 PDIFTYNFLVKC------LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
P+I++Y+ L+ LC L + +M G++PN TY + +C K
Sbjct: 209 PNIYSYSVLMSMYTHGAKLC----LEEAQELLSEMEVE-GVRPNAATYGTYLYGLCRAKQ 263
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A + L G+ + + +N ++ G+
Sbjct: 264 VKSAWNFLQMLCQRGYPCNSYCFNAVIHGF 293
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD Y L+ C CK ++ +M G+ + YT LI
Sbjct: 589 MIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETE-GLSADSFVYTCLIGGFSKVL 647
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A + + + G P Y ++ GY
Sbjct: 648 AMDGAQLFMEEMMNKGLTPTVVTYTDLIIGY 678
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D F Y L+ K ++ F+++M + G+ P +VTYT LI + ++A
Sbjct: 629 LSADSFVYTCLIGGFSKVLAMDGAQLFMEEM-MNKGLTPTVVTYTDLIIGYFKIGDEKKA 687
Query: 66 MRLVSALSDSGFKPD 80
M + +++ +G PD
Sbjct: 688 MVMYNSMLQAGIAPD 702
>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y+ LV LCK + T Y + +M A GI PNLV+Y+ L+ +C + A
Sbjct: 316 PDVHSYSILVDGLCKQGDVLTGYYMLVEM-ARNGITPNLVSYSSLLHGLCRAGRVELAFE 374
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L D GFK D VY+ ++ G
Sbjct: 375 LFKRLKDQGFKHDHIVYSIVLHG 397
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + TY ++ LCK ++ F D ++ G P+ V Y+I+ID +L+EA
Sbjct: 491 PSLCTYRVIIHGLCKVNKPNDMWGIFADMIKR--GYVPDTVLYSIIIDGFVKALDLQEAF 548
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + D G KP+ F Y +++ G
Sbjct: 549 RLYYKMVDEGTKPNIFTYTSLING 572
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFTY L+ LC L V M G+ P+ + YT LI C N++ A+
Sbjct: 561 PNIFTYTSLINGLCHDDKLPEVMTLFKHMIGE-GLAPDRILYTSLIACYCKRSNMKAALE 619
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G D FVY ++ G+
Sbjct: 620 IFREMETEGLSADSFVYTCLIGGF 643
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y+ ++ K L + +M G KPN+ TYT LI+ +C+ L E M
Sbjct: 526 PDTVLYSIIIDGFVKALDLQEAFRLYYKM-VDEGTKPNIFTYTSLINGLCHDDKLPEVMT 584
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD +Y +++ Y
Sbjct: 585 LFKHMIGEGLAPDRILYTSLIACY 608
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD + Y+ L+ C+ R L + M S GI PN+VT TIL+ N
Sbjct: 414 MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELM-VSDGICPNVVTCTILVHGFSNEG 472
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA + + G P Y I+ G
Sbjct: 473 LIGEAFLFLDKVRQFGVVPSLCTYRVIIHG 502
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T LV + + F+D++R G+ P+L TY ++I +C +
Sbjct: 456 PNVVTCTILVHGFSNEGLIGEAFLFLDKVR-QFGVVPSLCTYRVIIHGLCKVNKPNDMWG 514
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G+ PD +Y+ I+ G+
Sbjct: 515 IFADMIKRGYVPDTVLYSIIIDGF 538
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY + LC + + + +NF+ QM G N + +I C+ + +A+
Sbjct: 246 PNAATYATYLYGLCHAKQVKSAWNFL-QMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIE 304
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + GF PD Y+ ++ G
Sbjct: 305 VFDGMKKCGFVPDVHSYSILVDG 327
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD Y L+ C CK ++ +M G+ + YT LI
Sbjct: 589 MIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETE-GLSADSFVYTCLIGGFSKVL 647
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A + + + G P Y ++ GY
Sbjct: 648 AMDGAQLFMEEMMNKGLTPTVVTYTDLIVGY 678
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G++PN TY + +C+ K ++ A + L G+ + + +N ++ G+
Sbjct: 243 GVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGF 293
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D F Y L+ K ++ F+++M + G+ P +VTYT LI + ++A
Sbjct: 629 LSADSFVYTCLIGGFSKVLAMDGAQLFMEEM-MNKGLTPTVVTYTDLIVGYFKIGDEKKA 687
Query: 66 MRLVSALSDSGFKPD 80
M + +++ +G PD
Sbjct: 688 MAMYNSMLQAGIAPD 702
>gi|255660994|gb|ACU25666.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 376
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++F+++ P I TYN L+ LCK YN V ++ G+ P ++TY++L+
Sbjct: 185 IVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDK-GLNPGVITYSMLMKG 243
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C + A++L + ++ GFKPD ++N ++ G
Sbjct: 244 LCLDHKVERALQLWNQVTSKGFKPDVRMHNILIHG 278
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNAHVYNTLINGLVAASKFEDAIIVFREM-GTMHCSPTIITYNTLINGLCKKEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLNPGVITYSMLMKG 243
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVRMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D T+ LV CK + + ++ G+ + Y+ +I+ +C N +A+ +
Sbjct: 93 DSXTFGILVHGFCKNGYINKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANFDKAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNAHVYNTLING 173
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN LV C+ L V MR KPNLVT+ +++ +C + A +
Sbjct: 43 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 102
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD YNT++ GY
Sbjct: 103 VFDEMVREGLAPDVVSYNTLLSGY 126
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+ T+ L+ CK +L V QMR G++ N VT+T LID C L
Sbjct: 145 RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER-GLRMNEVTFTALIDGFCKKGFLD 203
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ V + G +P YN ++ GY
Sbjct: 204 DALLAVEEMRKCGIQPSVVCYNALINGY 231
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD+ TY+ ++ CK +L + + +M G+ P+ +TY+ LI +C K L
Sbjct: 250 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKK-GVLPDAITYSSLIRGLCEEKRLN 308
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + G +PD F Y T++ G+
Sbjct: 309 DACELFENMLQLGVQPDEFTYTTLIDGH 336
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN LV+ LC L V MR + G PN VTY L+ C L A R
Sbjct: 8 PNVYTYNILVRALCARGRLEEAVGVVGDMRGA-GCAPNAVTYNTLVAAFCRAGELDGAER 66
Query: 68 LVSALSDSG-FKPDCFVYNTIMKG 90
+VS + + G KP+ +N+++ G
Sbjct: 67 VVSLMREEGNAKPNLVTFNSMVNG 90
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ LC+ + L + M LG++P+ TYT LID C
Sbjct: 282 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM-LQLGVQPDEFTYTTLIDGHCKEG 340
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +A+ L + G PD Y+ ++ G
Sbjct: 341 NVEKALSLHDEMIRKGVLPDVVTYSVLING 370
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + YN L+ CK + + +M A +KP++VTY+ +I C NL A
Sbjct: 217 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKR-VKPDVVTYSTIISGYCKVGNLDSA 275
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + G PD Y+++++G
Sbjct: 276 FQLNQKMLKKGVLPDAITYSSLIRG 300
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ +YN L+ CK L +M G+ P++VT+T LI C
Sbjct: 107 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAG 165
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL +A+ LV+ + + G + + + ++ G+
Sbjct: 166 NLEQAVALVAQMRERGLRMNEVTFTALIDGF 196
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N +V LCK + D+M G+ P++V+Y L+ C L E++
Sbjct: 79 PNLVTFNSMVNGLCKAGRMEGARKVFDEM-VREGLAPDVVSYNTLLSGYCKVGCLHESLA 137
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ S ++ G PD + +++
Sbjct: 138 VFSEMTQRGLVPDVVTFTSLI 158
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+ L+ CK L V++MR GI+P++V Y LI+ C + A L+
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEEMR-KCGIQPSVVCYNALINGYCKLGRMDLARELIRE 246
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ KPD Y+TI+ GY
Sbjct: 247 MEAKRVKPDVVTYSTIISGY 266
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY L+ CK ++ + D+M G+ P++VTY++LI+ + + +EA R
Sbjct: 324 PDEFTYTTLIDGHCKEGNVEKALSLHDEM-IRKGVLPDVVTYSVLINGLSKSARTKEAHR 382
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ L PD Y+ +M
Sbjct: 383 LLFKLYHEDPVPDNIKYDALM 403
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G+ PN+ TY IL+ +C L EA+ +V + +G P+ YNT++ +
Sbjct: 5 GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAF 55
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ ++T+N ++ LCK L +FV M S G+KPN+VTY ++ C++ +
Sbjct: 216 RIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETS-GVKPNIVTYNTIVHGYCSSGRVEA 274
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++ + +PD F Y +++ G
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISG 300
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TYN L+ C+C + + D+M AS GIKP TYT L+ + ++
Sbjct: 390 KGISPDAITYNILINGYCRCANAKKAFLLHDEMLAS-GIKPTKKTYTSLLHVLSKKNRMK 448
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L ++ G PD ++N ++ G+
Sbjct: 449 EADDLFKKITSEGVLPDVIMFNALIDGH 476
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PPD T+N +++ C+ + D+M+ GIKP+ +++ LI ++++
Sbjct: 496 KVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR-GIKPDHISFNTLISGYSRRGDIKD 554
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A R+ + + D+GF P YN +++G
Sbjct: 555 AFRVRNEMLDTGFNPTVLTYNALVQG 580
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD FTY L+ +CK L ++M G++P+ V Y LID CN NL
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEM-VQKGLRPSAVIYNTLIDGFCNKGNLD 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + G P YN+++
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHA 370
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +N L+ C ++ + + M + + P+ VT+ ++ C + EA
Sbjct: 464 PDVIMFNALIDGHCSNSNVKGAFELLKDMD-RMKVPPDEVTFNTIMQGHCREGKVEEARE 522
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G KPD +NT++ GY
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGY 546
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I T N L+ K + +M L IK ++ T+ I+I+ +C L+
Sbjct: 180 KGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM-FRLRIKSSVYTFNIMINVLCKEGKLK 238
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A V + SG KP+ YNTI+ GY
Sbjct: 239 KAKDFVGHMETSGVKPNIVTYNTIVHGY 266
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P + TYN L+ L + + +++ GI P+ +TY ILI+ C
Sbjct: 352 MLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK-GISPDAITYNILINGYCRCA 410
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N ++A L + SG KP Y +++
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLL 438
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD ++N L+ + + + ++M + G P ++TY L+ +C +
Sbjct: 530 RGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDT-GFNPTVLTYNALVQGLCKNQEGD 588
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + G PD Y T+++G
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEG 615
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVT+ I+I +N A
Sbjct: 460 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQ-GCTPNLVTFNIMIALHAKARNYETA 518
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 519 LKLYRDMQNAGFQPDKVTYSIVME 542
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ + L N +QM+ + G +P+ VTY LID L AM
Sbjct: 392 PNTVTYNRLIHSYGRANYLKEAMNVFNQMQEA-GCEPDRVTYCTLIDIHAKAGFLDIAMD 450
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + ++G PD F Y+ I+
Sbjct: 451 MYQRMQEAGLSPDTFTYSVII 471
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +D+M G KPN VTY LI + L+EAM +
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRD-GCKPNTVTYNRLIHSYGRANYLKEAMNV 416
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G +PD Y T++
Sbjct: 417 FNQMQEAGCEPDRVTYCTLI 436
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N ++ K R+ T M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 497 PNLVTFNIMIALHAKARNYETALKLYRDMQNA-GFQPDKVTYSIVMEVLGHCGFLEEAEG 555
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 556 VFAEMQRKNWVPDEPVYGLLV 576
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK +L + F ++M G+ L+TY++LI+ + + EA
Sbjct: 346 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD-GVNATLITYSVLINGLMKLEKFNEANS 404
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + GF P+ VYNT++ GY
Sbjct: 405 VLKETLEKGFTPNEVVYNTLIDGY 428
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD FTYN L+ +C+ L N ++ + S + PN+ TY ++ID C
Sbjct: 619 MVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK-SRDLVPNVYTYGVMIDGYCKAD 677
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E +L + L + + VYNT+++ Y
Sbjct: 678 KIEEGEKLFTELLTQNLELNSVVYNTLIRAY 708
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ Y L+ CK + V N + +M +S I PN +TYT++ID + +++
Sbjct: 762 EGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM-SSYDIHPNKITYTVMIDGYSKSGDMK 820
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L+ + G PD YN + G+
Sbjct: 821 TAAKLLHEMVGKGIVPDTVTYNVLTNGF 848
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + L + YN L++ C+ + + D MR S GI P TY+ LI +CN
Sbjct: 689 LLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR-SKGIPPTTATYSSLIHGMCNIG 747
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L+ + G P+ Y ++ GY
Sbjct: 748 RMEDAKCLIDEMRKEGLLPNVVCYTALIGGY 778
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PP TY+ L+ +C + +D+MR G+ PN+V YT LI C +
Sbjct: 727 KGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKE-GLLPNVVCYTALIGGYCKLGQMD 785
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + ++ +S P+ Y ++ GY
Sbjct: 786 KVVNVLQEMSSYDIHPNKITYTVMIDGY 813
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++ ++ + CK + M LG+ PN+VTY LI +C NL
Sbjct: 307 QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDME-KLGVSPNVVTYNNLIHGLCKHGNLD 365
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA R + G Y+ ++ G
Sbjct: 366 EAFRFKEKMVKDGVNATLITYSVLING 392
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+ LV LCK + ++ G NLVT LI +C T
Sbjct: 514 MLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK-GFGANLVTTNALIHGLCKTG 572
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++EA+RL+ + + GF D YNT++ G
Sbjct: 573 NMQEAVRLLKKMLERGFVLDKITYNTLISG 602
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K ++ T N L+ LCK ++ + +M G + +TY LI C
Sbjct: 549 LLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKM-LERGFVLDKITYNTLISGCCKEG 607
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E +L + G +PD F YN ++ G
Sbjct: 608 KVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 637
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ YN L+ CK +L M S GI PN VT +I C +
Sbjct: 412 KGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM-VSKGINPNSVTLNSIIQGFCKIGQME 470
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A ++ + GF + + TI+
Sbjct: 471 QAECILEEMLSRGFSINPGAFTTIIH 496
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVT+ I+I +N A
Sbjct: 450 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQ-GCTPNLVTFNIMIALHAKARNYETA 508
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 509 LKLYRDMQNAGFQPDKVTYSIVME 532
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ + L N QM+ + G +P+ VTY LID L AM
Sbjct: 382 PNTVTYNRLIHSYGRANYLNEAMNVFKQMQEA-GCEPDRVTYCTLIDIHAKAGFLDIAMD 440
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +G PD F Y+ I+
Sbjct: 441 MYQRMQAAGLSPDTFTYSVII 461
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +D+M G KPN VTY LI + L EAM +
Sbjct: 348 DGHTYTTMVGNLGRAKQFGAINRLLDEMVKD-GCKPNTVTYNRLIHSYGRANYLNEAMNV 406
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ ++G +PD Y T++
Sbjct: 407 FKQMQEAGCEPDRVTYCTLI 426
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N ++ K R+ T M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 487 PNLVTFNIMIALHAKARNYETALKLYRDMQNA-GFQPDKVTYSIVMEVLGHCGFLEEAEG 545
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 546 VFAEMQRKNWVPDEPVYGLLV 566
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ YN ++ + + YN +M GI PN+VTYT +ID +C + + A
Sbjct: 158 PPDVVAYNTVINGFFREGQVEKAYNLFLEM-MDQGIPPNVVTYTTVIDGLCKAQVVDRAK 216
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G KPD YN ++ GY
Sbjct: 217 GVFQQMIDRGVKPDNGTYNCLIHGY 241
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PP++ TY ++ LCK + + QM G+KP+ TY LI +T +
Sbjct: 190 QGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQM-IDRGVKPDNGTYNCLIHGYLSTGKWK 248
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E ++++ +S G +PDC Y ++
Sbjct: 249 EVVQMLEEMSTHGLEPDCITYALLL 273
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN L+ V +++M ++ G++P+ +TY +L+D +C
Sbjct: 222 MIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEM-STHGLEPDCITYALLLDYLCKNG 280
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
REA ++ G KPD +Y ++ GY
Sbjct: 281 RCREARLFFDSMFRKGIKPDVAIYAILLHGY 311
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +N L+ LC + +D M +G++PN+++Y L+ C T + EA +L
Sbjct: 440 DAVFFNTLMCNLCNEGRVMEAQRLIDLM-IRVGVRPNVISYNTLVAGHCLTGRIDEAAKL 498
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +G KP+ F Y +++GY
Sbjct: 499 LDVMVSNGLKPNEFTYTILLRGY 521
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN LV C + +D M S G+KPN TYTIL+ C + + +A
Sbjct: 474 PNVISYNTLVAGHCLTGRIDEAAKLLDVM-VSNGLKPNEFTYTILLRGYCKARRVDDAYS 532
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P YNTI+ G
Sbjct: 533 LFREMLMKGVTPVVATYNTILHG 555
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P+ FTY L++ CK R + Y+ +M G+ P + TY ++ + T
Sbjct: 502 MVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMK-GVTPVVATYNTILHGLFQTG 560
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + +S K D + YN I+ G
Sbjct: 561 RFSEANELYLNMINSRTKCDIYTYNIILNG 590
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+I + + P+IF ++ LV LC ++ + +DQ GI + V + L+ N+
Sbjct: 397 MINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQ-----GICVDAVFFNTLMCNL 451
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
CN + EA RL+ + G +P+ YNT++ G+
Sbjct: 452 CNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGH 486
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ TY+ L+ C C+ L + + + G + N++ + L+ +C+ K + E
Sbjct: 85 KVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKT-GWRVNVIVISQLLKGLCDAKRVDE 143
Query: 65 AMR-LVSALSDSGFKPDCFVYNTIMKGY 91
A L+ +S+ G PD YNT++ G+
Sbjct: 144 ATDILLLRMSEFGCPPDVVAYNTVINGF 171
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+ ++ L+ LCK + +QM + G+ PN+ ++ L+ +C
Sbjct: 365 QGLSPDVVSFGALIDALCKLGRVDDAVLQFNQM-INEGVTPNIFVFSSLVYGLCTVGKWE 423
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L + D G D +NT+M
Sbjct: 424 KAEELFFEVLDQGICVDAVFFNTLM 448
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ LCK F D M GIKP++ Y IL+ L E
Sbjct: 262 LEPDCITYALLLDYLCKNGRCREARLFFDSMFRK-GIKPDVAIYAILLHGYATKGALSEM 320
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G P+ ++N + Y
Sbjct: 321 HSFLDLMVGNGVSPNRRIFNIMFCAY 346
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ Y L+ +L+ +++F+D M + G+ PN + I+ +
Sbjct: 295 KGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGN-GVSPNRRIFNIMFCAYAKKAMIE 353
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EAM + + + G PD + ++
Sbjct: 354 EAMHIFNKMRQQGLSPDVVSFGALI 378
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQ----MRASLGIKPNL--VTYTILIDNVCNTKNL 62
DI+TYN ++ LCK NFVD+ R P L VT+ I+I +
Sbjct: 580 DIYTYNIILNGLCK-------NNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRK 632
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMK 89
+AM L + +S G PD Y I +
Sbjct: 633 EDAMDLFATISAYGLVPDVVTYRLIAE 659
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ +N + K + + ++MR G+ P++V++ LID +C
Sbjct: 327 MVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQ-GLSPDVVSFGALIDALCKLG 385
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ + + + G P+ FV+++++ G
Sbjct: 386 RVDDAVLQFNQMINEGVTPNIFVFSSLVYG 415
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T N ++ CK +T ++D M +KPN+VTYTIL+D +++A
Sbjct: 324 LVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQK-NVKPNVVTYTILVDGYRRLDKMKDA 382
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + A+S G +P+ +YN ++ G+
Sbjct: 383 LAVKEAMSGKGVRPNARIYNCLIAGF 408
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ YN L+ + +V +D+MR G++ ++VTY +LI +C +R
Sbjct: 392 KGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMK-GVRADIVTYNVLIGALCVKGEVR 450
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L+ + G +P YNTI+ GY
Sbjct: 451 KAVKLLDEMLMVGLEPVHLTYNTIINGY 478
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN---TK 60
+++ PD+FT+N ++ LCK L + +RA G+ P++VTY +ID C
Sbjct: 179 RRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRA-WGLAPSVVTYNTIIDGYCKRGRAG 237
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ + ++G P+ +N ++ GY
Sbjct: 238 RMYHVDALLKEMVEAGISPNEVTFNVLVNGY 268
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ T+N LV CK + ++M+ GI ++VTY+ L+ +C+ + E
Sbjct: 254 ISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQ-GIAASVVTYSALVWGLCSEGKVEEG 312
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++LV + D G P+ N+++ G+
Sbjct: 313 VKLVDEMKDLGLVPNLATLNSVLNGF 338
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKPNLVTYTILIDNVCNTKNL 62
L P + TYN ++ CK +Y+ VD + + GI PN VT+ +L++ C N
Sbjct: 216 LAPSVVTYNTIIDGYCKRGRAGRMYH-VDALLKEMVEAGISPNEVTFNVLVNGYCKDSNT 274
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R+ + G Y+ ++ G
Sbjct: 275 AAAVRVFEEMKQQGIAASVVTYSALVWG 302
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN ++ C+ ++ + Y +M + N+VTY + I +C + E
Sbjct: 464 LEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKK-RANVVTYNVFIKCLCRMGKMEET 522
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ + + G P+ Y+TI +G
Sbjct: 523 NELLNEMLEKGLVPNGVTYDTIKEG 547
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + DI TYN L+ LC + +D+M +G++P +TY +I+ C N++
Sbjct: 427 KGVRADIVTYNVLIGALCVKGEVRKAVKLLDEM-LMVGLEPVHLTYNTIINGYCEKGNIK 485
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
A + + + + + YN +K
Sbjct: 486 SAYEIRTRMEKGKKRANVVTYNVFIK 511
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TY+ LV LC + VD+M+ LG+ PNL T +++ C + +A +
Sbjct: 293 VVTYSALVWGLCSEGKVEEGVKLVDEMK-DLGLVPNLATLNSVLNGFCKKGMMTDAEGWI 351
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
++ KP+ Y ++ GY
Sbjct: 352 DSMEQKNVKPNVVTYTILVDGY 373
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI +N ++ CK + Y ++ + S+G PN VTYT LID C + NL
Sbjct: 169 KSAKPDIVAWNVIIHGFCKAGRVREAYEMLETL-VSMGCVPNAVTYTTLIDGFCKSGNLS 227
Query: 64 EAMRLVSALS--DSGFKPDCFVYNTIMKG 90
EA++L LS D +P+ +N ++ G
Sbjct: 228 EALQLFKVLSSRDHHAEPNVVTFNALISG 256
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L D FTY L+ LCK + V ++M G P++VTYT L+ C +L+
Sbjct: 276 RDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLRE-GCNPSVVTYTTLVHAHCKAGSLQ 334
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +++ ++ G PD Y +++G
Sbjct: 335 DAQQVIRSMVAKGIPPDVTTYTVLLEG 361
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L+ LCK L + V QM+A ++ + TYT L+D +C E R
Sbjct: 245 PNVVTFNALISGLCKADRLEHAFELVKQMKAR-DLRADTFTYTTLMDGLCKQGRTSEVSR 303
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P Y T++ +
Sbjct: 304 VFEEMLREGCNPSVVTYTTLVHAH 327
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ + + CK + + Y + M KP++V + ++I C +REA +
Sbjct: 138 DVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEM 197
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ L G P+ Y T++ G+
Sbjct: 198 LETLVSMGCVPNAVTYTTLIDGF 220
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY LV CK SL + M A GI P++ TYT+L++ + +R A
Sbjct: 315 PSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAK-GIPPDVTTYTVLLEGLFENGKVRTATE 373
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ P VY+ +++G
Sbjct: 374 FFEKILRERCPPCAVVYSALVRG 396
>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 344
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ PD+ T+N L+ C L + QM I P++ T+TIL+D +C
Sbjct: 43 MIAEKISPDVATFNSLIYGFCIIGQLKDAFGLFSQMVLK-NINPSVYTFTILVDGLCKEG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + G P+ Y +IM+GY
Sbjct: 102 KMKEAKSVIAMMMKDGVLPNVVTYTSIMEGY 132
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P ++T+ LV LCK + + + M G+ PN+VTYT +++ C
Sbjct: 78 MVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKD-GVLPNVVTYTSIMEGYCLVN 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + +S G P+ YN ++ G+
Sbjct: 137 EVNKTKHVFRTISRMGVAPNTQSYNIMINGF 167
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY +++ C + V + + +G+ PN +Y I+I+ C K + EA+
Sbjct: 120 PNVVTYTSIMEGYCLVNEVNKT-KHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALI 178
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P Y++++ G
Sbjct: 179 LFKEMCCRGIVPITVTYSSLIDG 201
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
G N+ TY I+I+ +C EA L+S + D G PD Y T
Sbjct: 270 GYSLNIQTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPDAVTYET 315
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LC + N QM S GIKP+ YT+LI + C+ L EA
Sbjct: 258 PNVRTYTVLIDALCGSGQKSEAMNLFKQMSES-GIKPDDCMYTVLIQSFCSGDTLDEASG 316
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + ++G P+ YN ++KG+
Sbjct: 317 LLEHMLENGLMPNVITYNALIKGF 340
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+ PD Y L++ C +L ++ M + G+ PN++TY LI
Sbjct: 282 LFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLEN-GLMPNVITYNALIKGF 340
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C KN+ +AM L+S + + PD YNT++ G
Sbjct: 341 CK-KNVHKAMGLLSKMLEQNLVPDLITYNTLIAG 373
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TYN L+K CK +++ + +M + P+L+TY LI C++ NL A
Sbjct: 326 LMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQ-NLVPDLITYNTLIAGQCSSGNLDSA 383
Query: 66 MRLVSALSDSGFKPD 80
RL+S + +SG P+
Sbjct: 384 YRLLSLMEESGLVPN 398
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 36/119 (30%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT------------------- 48
PD FTY + C+ + + + +M + G N V+
Sbjct: 188 PDYFTYTSFITGHCRRKEVDAAFKVFKEMTQN-GCHRNEVSYTQLIYGLFEAKKIDEALS 246
Query: 49 ----------------YTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
YT+LID +C + EAM L +S+SG KPD +Y +++ +
Sbjct: 247 LLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSF 305
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI+T+N LV CK + +V + + G P+ TYT I C K + A
Sbjct: 151 VSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQA-GCDPDYFTYTSFITGHCRRKEVDAA 209
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ ++ +G + Y ++ G
Sbjct: 210 FKVFKEMTQNGCHRNEVSYTQLIYG 234
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ L + + + +M L + P++ T+ L++ C + EA + V+ L
Sbjct: 123 YNNLLSSLARFGLVEEMKRLYTEMLEDL-VSPDIYTFNTLVNGYCKLGYVVEAKQYVTWL 181
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+G PD F Y + + G+
Sbjct: 182 IQAGCDPDYFTYTSFITGH 200
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y L+ LCK + ++ +M A+ G +PN TY L+D +C L A
Sbjct: 94 PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 153
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ F PD YNT+M
Sbjct: 154 VITEARKRDFAPDVVTYNTLM 174
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + ++N ++ LC+ R L ++M PNLVTY+++ID +C + L EA +
Sbjct: 200 PTLVSFNAIITGLCRARRLADALEVFNEM-IDRDFHPNLVTYSVVIDGLCKSDQLDEAQQ 258
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G +PD Y ++ G+
Sbjct: 259 LLDRMVSEGCRPDLVAYTPLVLGF 282
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY+ ++ LCK L +D+M S G +P+LV YT L+
Sbjct: 228 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRM-VSEGCRPDLVAYTPLVLGFSAAG 286
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A+ L+ + G PD Y ++
Sbjct: 287 RLDSALGLLRRMVSQGCIPDVVTYTVVI 314
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD+ TYN L+ L + + QM G P LV++ +I +C + L
Sbjct: 161 RDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEE-GYVPTLVSFNAIITGLCRARRLA 219
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + + D F P+ Y+ ++ G
Sbjct: 220 DALEVFNEMIDRDFHPNLVTYSVVIDG 246
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y LV L + + +M S G P++VTYT++ID +C + +A
Sbjct: 270 PDLVAYTPLVLGFSAAGRLDSALGLLRRM-VSQGCIPDVVTYTVVIDKLCKVGRVDDAHE 328
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L + P+ Y+ ++ GY
Sbjct: 329 IFRELVANKCSPNVVTYSALIGGY 352
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T + +++ LC+C + D +P++V+YT LI+ +C + A L
Sbjct: 62 TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 121
Query: 72 L-SDSGFKPDCFVYNTIMKG 90
+ + G +P+ F YN ++ G
Sbjct: 122 MVAAGGCRPNAFTYNALVDG 141
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
QLP TYN L++ C L ++ + +M G++ N T +I++ +C + +
Sbjct: 20 QLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVE-GMQCNDRTTSIILQGLCRCGRVAQ 78
Query: 65 AMRLVSA-LSDSGFKPDCFVYNTIMKG 90
A+ A L + +PD Y T++ G
Sbjct: 79 ALEHFDASLELAHAQPDVVSYTTLING 105
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + P++ TY+ L+ C+ + + +M +PN+VTY +I +
Sbjct: 333 LVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM----ACRPNVVTYNTMIWGLSMVD 388
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + +S+ GF PD Y + +
Sbjct: 389 RNEEAYGMFREMSECGFVPDARTYRGLKRA 418
>gi|255660974|gb|ACU25656.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 372
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK + YN V ++ G+ P ++TY++L+ +C + A+
Sbjct: 196 PTIITYNTLINGLCKNKMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHRVERALX 254
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 255 LWNQVTSKGFKPDVQMHNILIHG 277
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C K EA
Sbjct: 161 PNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNKMFGEAYN 219
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 220 LVKELLDKGLDPGVITYSMLMKG 242
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 92 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRAVSV 150
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 151 LNGMIKSGCKPNVHVYNTLING 172
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 262 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 319
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN ++G
Sbjct: 320 RNALVIWARILRNGLEPDIISYNITLEG 347
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L+ LCK + +M + G+ PN VT+T LID C L A
Sbjct: 202 VQPDVYTYSVLINGLCKESRMDEANGLFGEMLDN-GLVPNGVTFTTLIDGHCKNGRLDLA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + + + GF PD YNT++ G
Sbjct: 261 MDIYRQMLNQGFSPDVVTYNTLIYG 285
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I++Q+ PD+ TYN L+ LCK L +D+M + G+KP+ +TYT LID
Sbjct: 263 IYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEM-SRKGLKPDKITYTTLIDGS 321
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +L A L + + D VY ++ G
Sbjct: 322 CKEGDLETAFELRERMIKESIRLDDVVYTALIFG 355
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ K L + + MRAS G++P++ TY++LI+ +C + EA
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRAS-GVQPDVYTYSVLINGLCKESRMDEA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + D+G P+ + T++ G+
Sbjct: 226 NGLFGEMLDNGLVPNGVTFTTLIDGH 251
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ L+ CK L + QM + G P++VTY LI +C +L++A
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRLDLAMDIYRQM-LNQGFSPDVVTYNTLIYGLCKKGDLKQA 295
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ +S G KPD Y T++ G
Sbjct: 296 RYLLDEMSRKGLKPDKITYTTLIDG 320
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D + G++P++V++ L++ +L E
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL +A+ SG +PD + Y+ ++ G
Sbjct: 192 RLKNAMRASGVQPDVYTYSVLING 215
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY L+ CK L T + ++M I+ + V YT LI +C
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKE-SIRLDDVVYTALIFGLCQEGRAV 363
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A +++ + G KPD Y IM
Sbjct: 364 DAEKMLREMLRVGLKPDDETYTMIM 388
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+++ L K + V+ F ++ G +L + IL+ C +R A + A++
Sbjct: 107 VLEHLMKXKYFKLVWGFYKEI-LECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKW 165
Query: 76 GFKPDCFVYNTIMKGY 91
G +P +NT+M GY
Sbjct: 166 GLRPSVVSFNTLMNGY 181
>gi|413951894|gb|AFW84543.1| hypothetical protein ZEAMMB73_135692 [Zea mays]
Length = 575
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK ++T + MR S G+ P++ T ILID +C L+
Sbjct: 259 PNNITYNSIISALCKAGNMTEAFKLEQNMRQS-GLVPDIYTSNILIDGLCREGKLKMVDN 317
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD YNTI+ Y
Sbjct: 318 LLLDMCSNGLTPDTVTYNTIINAY 341
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI+T N L+ LC+ L V N + M S G+ P+ VTY +I+ C +++ A
Sbjct: 292 LVPDIYTSNILIDGLCREGKLKMVDNLLLDM-CSNGLTPDTVTYNTIINAYCRAQDMNSA 350
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ + +G +PD F YN M
Sbjct: 351 MNFMNKMLVAGCEPDIFTYNIWM 373
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + + + NF+++M + G +P++ TY I + ++ L +A
Sbjct: 327 LTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVA-GCEPDIFTYNIWMHSLYRNHMLNQA 385
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L+ L P+ YNT+M G
Sbjct: 386 GKLLDELVAVDCSPNSVTYNTLMDG 410
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN + L + L +D++ A + PN VTY L+D +C + L AM
Sbjct: 364 PDIFTYNIWMHSLYRNHMLNQAGKLLDELVA-VDCSPNSVTYNTLMDGIC-SDVLDRAMI 421
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L FKP+ N + +
Sbjct: 422 LTGRLIKMAFKPNTITLNVFLSHF 445
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
S GI PN +TY +I +C N+ EA +L + SG PD + N ++ G
Sbjct: 254 SRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDIYTSNILIDG 305
>gi|399107202|gb|AFP20365.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 16 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 72
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFK D Y+ ++ G
Sbjct: 73 AIRLLHRMIDEGFKXDVVTYSVVVNG 98
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + D+ TY+ +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 80 MIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 138
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 139 RIDEAERLFEEMSEKGCTRDSYCYNALI 166
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G K ++VTY+++++ +C
Sbjct: 45 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKXDVVTYSVVVNGLCKNG 103
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 104 RVEEALDYFQTCXFNGLAINSMFYSSLIDG 133
>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Vitis vinifera]
Length = 498
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + TYN L+ LCK L NF DQM S P+++TY L+ +C + EA+
Sbjct: 281 PPTVVTYNILINGLCKYGLLDRAINFFDQM-VSHNCLPDIITYNTLLAALCKEGMVDEAL 339
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ +L+D+ P YN ++ G
Sbjct: 340 HLLHSLNDTRCSPGLITYNIVIDG 363
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD TYN +++C+ F DQ+R G L+TYT+LI+ VC +A
Sbjct: 141 PPDAITYNTILRCMFDHGGFDQAIGFWKDQLRK--GCPAYLITYTVLIELVCKHCGTVQA 198
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ ++ G PD YN+++
Sbjct: 199 MEVLEDMAIEGCYPDIVTYNSLV 221
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + + + + + P L+TY I+ID + + +AM
Sbjct: 317 PDIITYNTLLAALCKEGMVDEALHLLHSLNDTR-CSPGLITYNIVIDGLAKKGCMEKAME 375
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + GF PD + T+ G
Sbjct: 376 LYGEMIERGFAPDDITHRTLFWG 398
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
L++ L K S + M S GI P+++TY +L+ +C L+ A+ L+ +S S
Sbjct: 80 LIRGLIKLESTERATRVLKIMVMSGGI-PDIITYNMLVGGLCKKGLLKTAIELLDEMSLS 138
Query: 76 GFKPDCFVYNTIMK 89
G PD YNTI++
Sbjct: 139 GCPPDAITYNTILR 152
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 8 PDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
PDI TYN LV CK + +YN + S G+ PN VTY L+ ++C
Sbjct: 212 PDIVTYNSLVNYTCKQGKYEDTALIIYNLL-----SHGMGPNTVTYNTLLHSLCTHGYWD 266
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
E ++ ++ + P YN ++ G
Sbjct: 267 EVDEILLIMNTTSQPPTVVTYNILING 293
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY L++ +CK ++ M A G P++VTY L++ C
Sbjct: 173 KGCPAYLITYTVLIELVCKHCGTVQAMEVLEDM-AIEGCYPDIVTYNSLVNYTCKQGKYE 231
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+ ++ L G P+ YNT++
Sbjct: 232 DTALIIYNLLSHGMGPNTVTYNTLL 256
>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
Length = 607
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN + +CKC ++ + M A G+KPN+VTY+ LID + EA++L
Sbjct: 86 DIYTYNTFIDAICKCGNMELAMQVLLDMEAK-GVKPNVVTYSTLIDGYSKLEKYEEALKL 144
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + D YNT++ Y
Sbjct: 145 CEKMKSMRIQLDRVCYNTLLAIY 167
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD T+N L+ + L D+M LGI ++ TY ID +C N+ A
Sbjct: 48 LCPDRKTFNSLLAACSRVGHLEDARAVFDEM-IHLGIGRDIYTYNTFIDAICKCGNMELA 106
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M+++ + G KP+ Y+T++ GY
Sbjct: 107 MQVLLDMEAKGVKPNVVTYSTLIDGY 132
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + TY+ L+ K +N + S G+KP++V ++ ID + +
Sbjct: 221 RGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKES-GLKPDVVLFSSFIDTLAKNGLIE 279
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L++ +++ G KP+ YN I+ +
Sbjct: 280 WALSLLNDMTEMGIKPNVVTYNAIIDAF 307
Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+ K L V V MR G+ P+++TY+ LID +A +
Sbjct: 191 DTVTYNSLINGYGKQGRLDIVSILVQDMRKR-GVAPSVLTYSTLIDIYSKAGMHGDAFNV 249
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+SG KPD ++++ +
Sbjct: 250 YLDFKESGLKPDVVLFSSFI 269
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN L+ K + N D+M LGI+ + VTY LI+ L L
Sbjct: 156 DRVCYNTLLAIYVKAGKYAEIANVCDEME-ELGIEKDTVTYNSLINGYGKQGRLDIVSIL 214
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
V + G P Y+T++ Y
Sbjct: 215 VQDMRKRGVAPSVLTYSTLIDIY 237
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1 LIFKQ--LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
L FK+ L PD+ ++ + L K + + ++ M +GIKPN+VTY +ID
Sbjct: 251 LDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDM-TEMGIKPNVVTYNAIIDAFGK 309
Query: 59 TKNLRE 64
+K + E
Sbjct: 310 SKVMME 315
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P+ TY+ L+ LCK ++ V++ +D++ + G N++TY L++ +C +
Sbjct: 362 LKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEIN-NRGQPANIITYNSLLNGLCKNHQV 420
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ + D G +PD Y T++ G
Sbjct: 421 DKAIALLTKMKDEGIQPDMSTYTTLVDG 448
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P++ T+N L+ C L +++M + + PN+ T+ ILID +C
Sbjct: 220 MIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLN-NVNPNVYTFNILIDGLCKEG 278
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A ++S + G +P+ Y ++M GY
Sbjct: 279 EVKKATSVLSVMIKQGVEPNVVTYTSLMDGY 309
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P +I TYN L+ LCK + + +M+ GI+P++ TYT L+D +C L++A
Sbjct: 401 PANIITYNSLLNGLCKNHQVDKAIALLTKMKDE-GIQPDMSTYTTLVDGLCKNGRLKDAQ 459
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
R+ L G+ + +Y ++ G
Sbjct: 460 RIYQDLLCKGYPLNIRMYTVMING 483
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++T+N L+ LCK + + + M G++PN+VTYT L+D K + +A
Sbjct: 262 PNVYTFNILIDGLCKEGEVKKATSVLSVM-IKQGVEPNVVTYTSLMDGYFLVKEVNKAKH 320
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + +S G P+ Y+ ++ G
Sbjct: 321 VFNTISLRGVTPNVHSYSVMING 343
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TY LV LCK L + G N+ YT++I+ +C EA
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCK-GYPLNIRMYTVMINGLCKEGFFDEA 493
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+S + D+G PD Y T++
Sbjct: 494 LSLLSQMEDNGCMPDAVTYETLISA 518
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P IF +N ++ L K +F QM GI+P + T+ ILI+ + L A
Sbjct: 51 PPIFEFNKILSSLVKMNHFKIAISFSQQMELK-GIQPEMFTFNILINCFSHLCQLNFAFS 109
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V+ + G++PD NT+++G
Sbjct: 110 MVAKILKLGYQPDTVTVNTLLRG 132
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+ D +Y L+ LCK + ++ L ++P+++ YT +ID+ C K
Sbjct: 149 VIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDK 208
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L S + P+ +N+++ G+
Sbjct: 209 LVIDAYDLYSEMIVKKIYPNVVTFNSLIYGF 239
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P++FT+N L+ C L ++ V ++ LG +P+ VT L+ +C +
Sbjct: 81 LKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKI-LKLGYQPDTVTVNTLLRGLCLNGKV 139
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA+ + F D Y T++ G
Sbjct: 140 KEALNFHDHVIRKRFHLDQVSYGTLING 167
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Query: 1 LIFKQLPPDIFTYN------FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
+I + + P++ TY FLVK + K + V+N + +R G+ PN+ +Y+++I+
Sbjct: 290 MIKQGVEPNVVTYTSLMDGYFLVKEVNKAKH---VFNTI-SLR---GVTPNVHSYSVMIN 342
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C K + EA++L + P+ Y++++ G
Sbjct: 343 GLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDG 378
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ T++ L+ LCK +T ++ M GI PNL+TY LID C
Sbjct: 298 MVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVM-IQRGIVPNLITYNSLIDGFCMVG 356
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L ++ G +PD Y T++ GY
Sbjct: 357 DLNSARELFLSMPSKGLEPDEISYTTLINGY 387
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TYN L+ C L + M S G++P+ ++YT LI+ C T
Sbjct: 333 MIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSM-PSKGLEPDEISYTTLINGYCKTW 391
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EAM L + + G P+ Y T++KG
Sbjct: 392 KVKEAMNLYNEMLQVGKSPNVTTYGTLLKG 421
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCNTKNLR 63
L PD+FT + L CLC ++ V + M L G PN+VTYT LI +C +
Sbjct: 122 LSPDLFTLSILANCLC---NVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRIS 178
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA RL + G P+ Y T++KG
Sbjct: 179 EATRLFLRMQKLGCTPNAVTYGTLIKG 205
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I Y+ L+ LCK L T + +++ G++P++VTY I+I C + A L
Sbjct: 481 NIENYSCLIDGLCKAGKLETAWELFEKLSQE-GLQPDVVTYNIMIHGFCKVGQVDNANIL 539
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ ++G PD YNT++ G+
Sbjct: 540 FEKMEENGCTPDIIAYNTLLCGF 562
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM---RASLGI--KPNLVTYTILIDNVCNTKNL 62
P+ TY L+K LC+ ++ +M + G+ KP ++TY+I+ID +C
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + G PD Y+T++ G+
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGF 282
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 1 LIFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
L+ + P P I ++N L+ L K + +++ ++MR + G+ P+L T +IL + +CN
Sbjct: 81 LMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLA-GLSPDLFTLSILANCLCNV 139
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ ++ + G+ P+ Y T++KG
Sbjct: 140 NRVSEALAAMAGILRRGYIPNVVTYTTLIKG 170
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y + LCK L ++++ S K N+ Y+ LID +C L A L L
Sbjct: 450 YGIFLDGLCKNDCLFEAMELFNELK-SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKL 508
Query: 73 SDSGFKPDCFVYNTIMKGY 91
S G +PD YN ++ G+
Sbjct: 509 SQEGLQPDVVTYNIMIHGF 527
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ ++ LCK ++M+A G+ P++++Y+ LI C ++
Sbjct: 235 PGVITYSIIIDGLCKVGREDEAKELFEEMKAQ-GMIPDVISYSTLIHGFCCAGKWDQSKH 293
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + D G +PD ++ ++
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLI 314
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+K LC ++ +M+ LG PN VTY LI +C T N+ A++
Sbjct: 159 PNVVTYTTLIKGLCMEHRISEATRLFLRMQ-KLGCTPNAVTYGTLIKGLCQTGNVNIALK 217
Query: 68 LVSAL----SDSGF--KPDCFVYNTIMKG 90
L + S G KP Y+ I+ G
Sbjct: 218 LHKEMLNDASQYGVNCKPGVITYSIIIDG 246
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+ TYN ++ CK + ++M + G P+++ Y L+ C L
Sbjct: 511 EGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEEN-GCTPDIIAYNTLLCGFCEGNKLE 569
Query: 64 EAMRLVSALSDSGFKPD 80
E ++L+ + P+
Sbjct: 570 EVIKLLHKMVQKDVSPN 586
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD +Y L+ CK + N ++M +G PN+ TY L+ + +
Sbjct: 371 KGLEPDEISYTTLINGYCKTWKVKEAMNLYNEM-LQVGKSPNVTTYGTLLKGLFQKGKVG 429
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +L + G + +Y + G
Sbjct: 430 DAKKLFGVMKTYGVSANSQIYGIFLDG 456
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+K L + + M+ + G+ N Y I +D +C L EAM
Sbjct: 410 PNVTTYGTLLKGLFQKGKVGDAKKLFGVMK-TYGVSANSQIYGIFLDGLCKNDCLFEAME 468
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + L FK + Y+ ++ G
Sbjct: 469 LFNELKSYNFKLNIENYSCLIDG 491
>gi|357502513|ref|XP_003621545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241489|gb|ABD33347.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496560|gb|AES77763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 791
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK + D+++ G +P+ TYTIL+ C T + A+R
Sbjct: 273 PDMCTYNSVLSVLCKVGKINDALIVWDELKG-CGYEPDEFTYTILVRGCCRTYRMDVALR 331
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + D+GF+P VYN ++ G
Sbjct: 332 IFNEMKDNGFRPGVLVYNCVLDG 354
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI YN L+ L K + V F +QM++S GI P++VTY LI+ L++A +
Sbjct: 689 DIVMYNTLINALGKAGRIDEVNKFFEQMKSS-GINPDVVTYNTLIEIHSKAGRLKDAYKF 747
Query: 69 VSALSDSGFKPD 80
+ + D+G P+
Sbjct: 748 LKMMIDAGCTPN 759
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P DI TYN +++ L K +D + G ++V Y LI+ + + E
Sbjct: 652 PTDIATYNMIIQGLGKMGRADLASAVLDGLLKQGGY-LDIVMYNTLINALGKAGRIDEVN 710
Query: 67 RLVSALSDSGFKPDCFVYNTIMK 89
+ + SG PD YNT+++
Sbjct: 711 KFFEQMKSSGINPDVVTYNTLIE 733
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I TY+ L+ LCK + V++ +D+MR G +++TY+ LID +C +L
Sbjct: 368 KNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR-GQPADVITYSSLIDGLCKNGHLD 426
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + + D +P+ F + ++ G
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDG 453
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TY+ L+ LCK L ++M+ I+PN+ T+TIL+D +C L++A
Sbjct: 406 PADVITYSSLIDGLCKNGHLDRAIALFNKMKDQ-EIRPNIFTFTILLDGLCKGGRLKDAQ 464
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+ L G+ + + YN ++ G+
Sbjct: 465 EVFQDLLTKGYHLNVYTYNVMINGH 489
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ TY+ L+ C L +++M I PN+ TY IL+D +C ++
Sbjct: 228 KGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT-INPNVYTYNILVDALCKEGKVK 286
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +++ + + KPD Y+T+M GY
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGY 314
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+++TYN LV LCK + + + M + +KP+++TY+ L+D
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVITYSTLMDGYFLVY 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A + +A+S G PD Y ++ G+
Sbjct: 319 EVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD T N L+K LC + +F D++ A G + N V+Y LI+ VC + R A+
Sbjct: 126 PPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ-GFQLNQVSYATLINGVCKIGDTRGAI 184
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L+ + KP+ +Y+TI+
Sbjct: 185 KLLRKIDGRLTKPNVEMYSTII 206
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P+IFT+ L+ LCK L V Q + G N+ TY ++I+ C L
Sbjct: 438 QEIRPNIFTFTILLDGLCKGGRLKDAQE-VFQDLLTKGYHLNVYTYNVMINGHCKQGLLE 496
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ ++S + D+G P+ F + TI+
Sbjct: 497 EALTMLSKMEDNGCIPNAFTFETII 521
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T N L+ C C +T ++ + ++ G P+ VT LI +C
Sbjct: 85 LELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKR-GYPPDTVTLNTLIKGLCLKG 143
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ L GF+ + Y T++ G
Sbjct: 144 QVKKALHFHDKLLAQGFQLNQVSYATLING 173
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + PP I +N ++ K + +T + ++ GI+P+L+T ILI+ C+
Sbjct: 51 LCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELK-GIQPDLITLNILINCFCHMG 108
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +++ + G+ PD NT++KG
Sbjct: 109 QITFGFSVLAKILKRGYPPDTVTLNTLIKG 138
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ L K ++ VDQM G+ PN++TY +ID + T +
Sbjct: 246 KNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDR-GVPPNILTYNSIIDALFKTHQVD 304
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ D G +P + Y ++ G
Sbjct: 305 KAIALITKFKDQGIQPSMYTYTILIDG 331
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLT---TVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+I + + PD +T+N LV CK R + TV+ M GI P++VTY L+D
Sbjct: 138 IILENIKPDGYTFNILVDGFCKDRKMKEGKTVF----AMMMKQGIIPDVVTYNSLVDGYR 193
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
K + A + + ++ G PD YN ++ G+
Sbjct: 194 LVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGF 227
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 4 KQLPPDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+ +PP+I TYN ++ L K +++ + F DQ GI+P++ TYTILID +C
Sbjct: 281 RGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQ-----GIQPSMYTYTILIDGLCKG 335
Query: 60 KNLREAMRLVSAL 72
L++A + L
Sbjct: 336 GRLKDARNIFEDL 348
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ KQ + PD+ TYN LV + + T + + M A G+ P++ +Y ILI+ C
Sbjct: 172 MMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTM-AQGGVNPDIRSYNILINGFCKI 230
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K + +AM L + + P+ YN+++ G
Sbjct: 231 KKVDKAMNLFNEMHCKNIIPNVVTYNSLIDG 261
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TY+ L+ L + +++ IKP+ T+ IL+D C +
Sbjct: 103 MVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILE-NIKPDGYTFNILVDGFCKDR 161
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++E + + + G PD YN+++ GY
Sbjct: 162 KMKEGKTVFAMMMKQGIIPDVVTYNSLVDGY 192
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T N L+K LC + + F D++ A LG + V+Y LI +C R A+
Sbjct: 5 PNTITLNTLIKGLCLKGQIHQAFLFHDKLVA-LGFHLDQVSYGTLIHGLCKVGETRAALD 63
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + + +YNT++ G
Sbjct: 64 LLQRVDGKLVQLNAVMYNTVIYG 86
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ C+ +L +++M+ S G+ P+ V Y L++ +C L E +
Sbjct: 160 PDVITYTSLIVGCCQTNALDEARKLMEKMKES-GLTPDTVAYNALLNGLCKQNQLEEVSK 218
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + ++G +PD F YNT++
Sbjct: 219 LLEEMVEAGREPDTFSYNTVV 239
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD YN L+ LCK + N + M + P+++TYT LI C T
Sbjct: 118 MIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCV-PDVITYTSLIVGCCQTN 176
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA +L+ + +SG PD YN ++ G
Sbjct: 177 ALDEARKLMEKMKESGLTPDTVAYNALLNG 206
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY+ L+ LCK + + N +D M G P++ TYT LID C + A +
Sbjct: 539 PNLYTYSILINGLCKTKRVEDAINVLDVMLEK-GCVPDVATYTSLIDGFCKINKMDAAYQ 597
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ DSG +PD YN ++ G+
Sbjct: 598 CFKTMRDSGCEPDKLAYNILISGF 621
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY+ LV LCK + + +M G +PNLVT+ +ID C
Sbjct: 363 MVEKDCAPDVVTYSILVNGLCKLGKVDDA-RLLLEMMLERGCQPNLVTFNTMIDGFCKAG 421
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E +++ + + PD Y+T++ GY
Sbjct: 422 KVDEGHKVLELMKEVSCTPDVVTYSTLIDGY 452
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY L+ CK + Y MR S G +P+ + Y ILI C +
Sbjct: 567 MLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDS-GCEPDKLAYNILISGFCQSG 625
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N+ +A+ ++ + + G PD Y ++M+
Sbjct: 626 NVEKAIEVMQLMLEKGCNPDAATYFSLMR 654
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P + TY L+ + L Y ++ M + GI P+LVTY L+D +C
Sbjct: 293 MVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKA-GISPDLVTYNCLLDGLCKAG 351
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA L+ + + PD Y+ ++ G
Sbjct: 352 KLEEAHELLEVMVEKDCAPDVVTYSILVNG 381
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
L+ KQ PP Y ++ LC + Q+ + G +PNL TY+ILI+ +C T
Sbjct: 496 LMTKQGCPPTSSHYALIIGGLCDVERGDEALKML-QVMSERGCEPNLYTYSILINGLCKT 554
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
K + +A+ ++ + + G PD Y +++ G+
Sbjct: 555 KRVEDAINVLDVMLEKGCVPDVATYTSLIDGF 586
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD YN L+ LCK L V +++M G +P+ +Y ++ +C + EA
Sbjct: 193 LTPDTVAYNALLNGLCKQNQLEEVSKLLEEM-VEAGREPDTFSYNTVVACLCESGKYEEA 251
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + PD YN++M G+
Sbjct: 252 GKILEKMIEKKCGPDVVTYNSLMDGF 277
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+ PD+ TYN L+ CK + ++ M P ++TYT LI
Sbjct: 258 MIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR-CAPTVITYTTLIGGFSRAD 316
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A R++ + +G PD YN ++ G
Sbjct: 317 RLADAYRVMEDMFKAGISPDLVTYNCLLDG 346
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F+YN +V CLC+ +++M P++VTY L+D C + EA R
Sbjct: 230 PDTFSYNTVVACLCESGKYEEAGKILEKM-IEKKCGPDVVTYNSLMDGFCKVSKMDEAER 288
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + P Y T++ G+
Sbjct: 289 LLEDMVGRRCAPTVITYTTLIGGF 312
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ T+N ++K C+ L + R + P TY ILI +C +
Sbjct: 50 MLARRFSPDVITHNTILKAYCQIGDLDRA---LSHFRGKMWCSPTAFTYCILIHGLCQCQ 106
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA +L+ + PD VYN ++ G
Sbjct: 107 RIDEAYQLLDEMIQKDCHPDAAVYNCLIAG 136
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ CK + + A LGI P+ +Y+ +++ +C+T + EA
Sbjct: 440 PDVVTYSTLIDGYCKANRMQDAF-------AILGISPDKASYSSMLEGLCSTGKVEEAQE 492
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G P Y I+ G
Sbjct: 493 VMDLMTKQGCPPTSSHYALIIGG 515
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +Y+ +++ LC + +D M G P Y ++I +C+ + EA
Sbjct: 467 ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQ-GCPPTSSHYALIIGGLCDVERGDEA 525
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++++ +S+ G +P+ + Y+ ++ G
Sbjct: 526 LKMLQVMSERGCEPNLYTYSILING 550
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ T+N ++ CK + + ++ M+ + P++VTY+ LID C
Sbjct: 398 MLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMK-EVSCTPDVVTYSTLIDGYCKAN 456
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A ++ G PD Y+++++G
Sbjct: 457 RMQDAFAIL------GISPDKASYSSMLEG 480
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ +TY L+ CK +L+ + ++M +G++ N+VTYT LID +C+ + ++EA
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEM-LQVGVEWNVVTYTALIDGLCDAERMKEA 456
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G P+ YN ++ G+
Sbjct: 457 EELFGKMDTAGVIPNLASYNALIHGF 482
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN L+ C CK L F +M+ + G+KPN+V+Y+ L+D C +++A+
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+ + G P+ + Y +++
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLI 409
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TY L+ LC + +M + G+ PNL +Y LI KN+ A+ L
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTA-GVIPNLASYNALIHGFVKAKNMDRALEL 494
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ L G KPD +Y T + G
Sbjct: 495 LNELKGRGIKPDLLLYGTFIWG 516
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ +Y+ LV CK + F MR +G+ PN TYT LID C NL +A
Sbjct: 363 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR-RVGLVPNEYTYTSLIDANCKIGNLSDA 421
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + G + + Y ++ G
Sbjct: 422 FRLGNEMLQVGVEWNVVTYTALIDG 446
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN L+ K +++ +++++ GIKP+L+ Y I +C+ + + A
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGR-GIKPDLLLYGTFIWGLCSLEKIEAAKV 528
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + G K + +Y T+M Y
Sbjct: 529 VMNEMKECGIKANSLIYTTLMDAY 552
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ T+ L+ LCK + ++ ++ +++ G++ N +T +ID +C + A L
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF 636
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G PD Y ++M G
Sbjct: 637 EQMVQKGLVPDRTAYTSLMDG 657
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ L PD TYN ++ K L F ++M+ + +P+++TY LI+ C L
Sbjct: 290 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK-DMCCEPDVITYNALINCFCKFGKL 348
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G KP+ Y+T++ +
Sbjct: 349 PIGLEFYREMKGNGLKPNVVSYSTLVDAF 377
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+ K V F M + G +P + TY I+ID +C ++ A
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGA-GARPTVFTYNIMIDCMCKEGDVEAARG 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YN+++ G+
Sbjct: 284 LFEEMKFRGLVPDTVTYNSMIDGF 307
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q IFT ++ LCK + +QM G+ P+ YT L+D N+ E
Sbjct: 610 QANAAIFTA--MIDGLCKDNQVEAATTLFEQM-VQKGLVPDRTAYTSLMDGNFKQGNVLE 666
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L +++ G K D Y +++ G
Sbjct: 667 ALALRDKMAEIGMKLDLLAYTSLVWG 692
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ TYN ++ LC L D M AS G PN+VTY LI C +
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM-ASKGCFPNVVTYNTLISGFCKFR 330
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E M+L +S GF D F YNT++ GY
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + + +M LG +P++VT+ L+ C + +A
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKM-MKLGYEPSIVTFGSLLHGFCLVNRIGDA 160
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
LV + SG++P+ VYNT++ G
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDG 185
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P I T+ L+ C + ++ V M S G +PN+V Y LID +C L A+
Sbjct: 138 EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEPNVVVYNTLIDGLCKNGELNIAL 196
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G D YNT++ G
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTG 220
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L D+ TYN L+ LC + + D M+ S I P++VT+T LID NL
Sbjct: 205 KGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS--INPDVVTFTALIDVFVKQGNL 262
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + S P+ YN+I+ G
Sbjct: 263 DEAQELYKEMIQSSVDPNNVTYNSIING 290
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKPNLVTYTILIDNVC 57
++ +++ PDI T+ L+ LC + + D MR S +GI V Y I+I +C
Sbjct: 377 MVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGI----VAYNIMIHGLC 432
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L L G KPD Y ++ G
Sbjct: 433 KADKVEKAWELFCRLPVEGVKPDARTYTIMILG 465
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I YN ++ LCK + + ++ G+KP+ TYTI+I +C REA L+
Sbjct: 421 IVAYNIMIHGLCKADKVEKAWELFCRLPVE-GVKPDARTYTIMILGLCKNGPRREADELI 479
Query: 70 SALSDSG 76
+ + G
Sbjct: 480 RRMKEEG 486
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ Q P I + L+ R TV F +M GI +L ++TILI C
Sbjct: 62 MVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMEL-YGISHDLYSFTILIHCFCRCS 120
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L A+ ++ + G++P + +++ G+
Sbjct: 121 RLSFALSVLGKMMKLGYEPSIVTFGSLLHGF 151
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK R + +M G ++ TY LI C LR A+
Sbjct: 314 PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE-GFNADIFTYNTLIHGYCQVGKLRVALD 372
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + PD + ++ G
Sbjct: 373 IFCWMVSRRVTPDIITHCILLHG 395
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY +V LCK + + + +M I+P +V Y +ID +CN K
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG-KIEPGVVIYNTIIDALCNYK 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N+ +A+ L + + + G +P+ YN++++
Sbjct: 271 NVNDALNLFTEMDNKGIRPNVVTYNSLIR 299
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PDI+TYN +++ +CK + ++ + G+KPN+VTYT ++ C E
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVVTYTTMMSGFCRKGLKEE 554
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + + G PD YNT+++ +
Sbjct: 555 ADALFREMKEEGPLPDSGTYNTLIRAH 581
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ +++TY+ L+ C C+ L+ + +M LG +P++VT L++ C+ + +A
Sbjct: 112 ISHNLYTYSILINCFCRRSQLSLALAVLAKM-MKLGYEPDIVTLNSLLNGFCHGNRISDA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G++PD F +NT++ G
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHG 195
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 12/99 (12%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTIL 52
++FKQ+ PDI TY+ L+ LC K + V+ ++ + + ++P++ TY I+
Sbjct: 452 IVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK----MEPDIYTYNIM 507
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I+ +C + + L +LS G KP+ Y T+M G+
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L++CLC + + M I PN+VT++ LID L
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLV 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 344 EAEKLYDEMIKRSIDPDIFTYSSLINGF 371
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY LI C K
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK 410
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E M L +S G + Y T++ G+
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+N L+ L + + VD+M G +P+LVTY I+++ +C ++ A+
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVK-GCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +P +YNTI+
Sbjct: 243 LLKKMEQGKIEPGVVIYNTII 263
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSL-----------------------TTVYNF----- 32
+I K P++ TYN L+K CK + + T ++ F
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446
Query: 33 ------VDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
V + S G+ P+++TY+IL+D +CN + A+ + L S +PD + YN
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506
Query: 87 IMKG 90
+++G
Sbjct: 507 MIEG 510
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + +QM+ +LGI NL TY+ILI+ C L A+
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLSLALA 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G++PD N+++ G+
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGF 161
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L D+M I P++ TY+ LI+ C
Sbjct: 317 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ YNT++KG+
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGF 406
>gi|341605687|gb|AEK82946.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFK D Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKXDVVTYSVVVNG 96
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + D+ TY+ +V LCK + ++ R + G+ N Y+ LID +
Sbjct: 78 MIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYFQTCRFN-GLAINSXFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G K ++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKXDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCRFNGLAINSXFYSSLIDG 131
>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI TYN L+ CK + V++M A+ G P++ TY I + +C + + A
Sbjct: 565 LIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYAT-GWDPDITTYNIRLHGLCTGRKMSRA 623
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ L +G PD YNT+M G
Sbjct: 624 VMMLEELISAGVVPDTVTYNTVMNG 648
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKPNLVTYTILIDNVCNTKNLREA 65
PD++ YN L+ C + ++ + MR + G P+LVT+ +I+ CN N+ EA
Sbjct: 182 PDVYAYNILINAYC---TRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEA 238
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + ++G P+ YNT+M GY
Sbjct: 239 RNLFDGMKEAGHIPNVVCYNTLMNGY 264
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PDIFT N ++ LCK + + + M + G+ P++VTY LID C +
Sbjct: 528 KGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHT-GLIPDIVTYNTLIDGYCKAFDTV 586
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+V+ + +G+ PD YN + G
Sbjct: 587 STDEVVNKMYATGWDPDITTYNIRLHG 613
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ F YN L++ C L +M A G+ P++ T I+I+ +C ++
Sbjct: 493 KGFMPNNFVYNSLIRGFCNSGRLQEALMLEREM-ARKGLLPDIFTTNIIINGLCKEGRMK 551
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + +G PD YNT++ GY
Sbjct: 552 SASDVFRNMHHTGLIPDIVTYNTLIDGY 579
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN + LC R ++ ++++ S G+ P+ VTY +++ VC T L AM
Sbjct: 602 PDITTYNIRLHGLCTGRKMSRAVMMLEEL-ISAGVVPDTVTYNTVMNGVC-TDVLERAMI 659
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + L F P+ N ++ +
Sbjct: 660 VTAKLLKMAFVPNVVTANLLLSHF 683
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++ + L + Y+ QM + G PN Y LI CN+ L+EA+
Sbjct: 462 PDAVAFSAFINGLSIVGLVDEAYDVFLQM-SKKGFMPNNFVYNSLIRGFCNSGRLQEALM 520
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ G PD F N I+ G
Sbjct: 521 LEREMARKGLLPDIFTTNIIING 543
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+ ++ C ++ N D M+ + G PN+V Y L++ +++ +A
Sbjct: 217 PSLVTFGTVINAFCNQGNMMEARNLFDGMKEA-GHIPNVVCYNTLMNGYVKARDIGQANM 275
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + PDC +N ++ G+
Sbjct: 276 LYEEMKSKAVAPDCTTFNILVAGH 299
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + LP + + L+ + + Y+ ++M GI P+ V ++ I+ +
Sbjct: 420 MIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGR-GIHPDAVAFSAFINGLSIVG 478
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + +S GF P+ FVYN++++G+
Sbjct: 479 LVDEAYDVFLQMSKKGFMPNNFVYNSLIRGF 509
>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FT N LVK LCK + +++M A +G PN+VTYT ++ + ++ A R
Sbjct: 239 PNVFTCNILVKALCKKNDIDAAIRVLEEMPA-MGFIPNVVTYTTILGGYVSKGDMVGARR 297
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G+ PD Y +M GY
Sbjct: 298 VFGEILDRGWVPDPTTYTILMDGY 321
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ L + + V+ R GI PN+ T IL+ +C ++ A
Sbjct: 201 LQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+R++ + GF P+ Y TI+ GY
Sbjct: 261 IRVLEEMPAMGFIPNVVTYTTILGGY 286
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN L+ +C+ L D M G PN TY +LI C N RE +R
Sbjct: 448 PSTLTYNALIAGMCEGGELPEAARLWDNM-VEKGCVPNAFTYNMLIKGFCKVGNAREGIR 506
Query: 68 LVSALSDSGFKPDCFVY 84
++ + D+G P+ Y
Sbjct: 507 VMEEMLDNGCLPNKATY 523
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K PD + L+ LCK + D+ G P+ +TY LI +C
Sbjct: 407 LLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEK--GSIPSTLTYNALIAGMCEGG 464
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA RL + + G P+ F YN ++KG+
Sbjct: 465 ELPEAARLWDNMVEKGCVPNAFTYNMLIKGF 495
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ CK +D+M + ++PN VTY ++I+ C K E +
Sbjct: 309 PDPTTYTILMDGYCKKGRFMDAVKVMDEMEENR-VEPNDVTYGVIIEAYCKEKKSGEVLN 367
Query: 68 LVSALSDSGFKP 79
L+ + + + P
Sbjct: 368 LLDDMLEKKYIP 379
>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 376
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNVHVYNTLINGLAGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKG 243
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRALSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKIQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g12700, mitochondrial-like
[Glycine max]
Length = 555
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K P D F+Y L+ LCK + +M L ++PNL+TY+ +ID +C +
Sbjct: 151 LMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDL-VRPNLITYSTVIDGLCKDR 209
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+RL S ++ G D YN+++ G
Sbjct: 210 LIADALRLFSLVTSRGILVDVVAYNSLIHG 239
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+N LV LCK + M G KP++VTY L++ C + N+ EA
Sbjct: 263 PDDYTFNILVDALCKEGRIVEAQGVFAVMMKR-GEKPDIVTYNALMEGFCLSNNVSEARE 321
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G +PD YN ++ GY
Sbjct: 322 LFNRMVKRGLEPDVLNYNVLINGY 345
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ TYN L+ LCK ++ V VD+M G P++VTY I +D C +K
Sbjct: 364 KNLVPNLATYNSLIDGLCKLGRMSCVQELVDEM-CDRGQSPDIVTYNIFLDAFCKSKPYE 422
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L + G PD ++Y+ I++ +
Sbjct: 423 KAISLFRQIV-QGIWPDFYMYDVIVENF 449
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP IF ++ L+ + + T + Q+ S GI P++ T TILI+ C+
Sbjct: 46 MLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLH-SKGITPSIATLTILINCYCHQA 104
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L A L+ + GF+P+ +NT++ G+
Sbjct: 105 HLSFAFSLLGTILKMGFQPNMVTFNTLINGF 135
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ YN L+ CK + ++R + PNL TY LID +C
Sbjct: 326 MVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCK-NLVPNLATYNSLIDGLCKLG 384
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ LV + D G PD YN + +
Sbjct: 385 RMSCVQELVDEMCDRGQSPDIVTYNIFLDAF 415
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I + + PD + Y+ +V+ CK L + + G PN+ TYTI+I+ +C +
Sbjct: 431 IVQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIH-GCCPNVRTYTIMINALCKDCS 489
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
EAM L+S + D+ PD + TI+
Sbjct: 490 FDEAMTLLSKMDDNDCPPDAVTFETII 516
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L+ C + M I P+ T+ IL+D +C + EA +
Sbjct: 229 DVVAYNSLIHGCCSVGQWREATRLLTMMVRG-NINPDDYTFNILVDALCKEGRIVEAQGV 287
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G KPD YN +M+G+
Sbjct: 288 FAVMMKRGEKPDIVTYNALMEGF 310
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I T L+ C C L+ ++ + + +G +PN+VT+ LI+ C +
Sbjct: 84 KGITPSIATLTILINCYCHQAHLSFAFSLLGTI-LKMGFQPNMVTFNTLINGFCINGMVS 142
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L G+ D F Y +++ G
Sbjct: 143 KAMAFRLDLMAKGYPLDEFSYGSLING 169
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ ++ LCK R + + S GI ++V Y LI C+ REA R
Sbjct: 193 PNLITYSTVIDGLCKDRLIADALRLF-SLVTSRGILVDVVAYNSLIHGCCSVGQWREATR 251
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + PD + +N ++
Sbjct: 252 LLTMMVRGNINPDDYTFNILVDA 274
>gi|341605685|gb|AEK82945.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFK D Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKXDVVTYSVVVNG 96
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + D+ TY+ +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 78 MIDEGFKXDVVTYSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G K ++VTY+++++ +C
Sbjct: 43 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKXDVVTYSVVVNGLCKNG 101
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ +G + Y++++ G
Sbjct: 102 RVEEALDYFQTCXFNGLAINSMFYSSLIDG 131
>gi|224068256|ref|XP_002302689.1| predicted protein [Populus trichocarpa]
gi|222844415|gb|EEE81962.1| predicted protein [Populus trichocarpa]
Length = 640
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 6 LPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L PD+ TYN L+ LC K + VY ++++ S G +P+ TY ILI C + +
Sbjct: 116 LDPDLCTYNSLIHVLCLAGKVKDAVIVY---EELKVS-GHEPDAFTYRILIQGCCKSYQM 171
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A ++ S + +GF PD VYN+++ G
Sbjct: 172 EDATKIFSEMQYNGFLPDTVVYNSLLDG 199
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY L++ CK + +M+ + G P+ V Y L+D + + + EA +
Sbjct: 153 PDAFTYRILIQGCCKSYQMEDATKIFSEMQYN-GFLPDTVVYNSLLDGMFKARKVMEACQ 211
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G + C+ YN ++ G
Sbjct: 212 LFEKMVQDGVRASCWTYNILIDG 234
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI YN L+ L K + N +QM+ S G+ P++VTY I+I+ T L++A +
Sbjct: 538 DIVMYNTLIDALGKAGRIDEANNLFEQMKIS-GLNPDVVTYNIMIEVHSKTGRLKDAYKF 596
Query: 69 VSALSDSGFKPD 80
+ + D+G P+
Sbjct: 597 LKMMLDAGCLPN 608
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PPDI TYN +++ L K + +D++ G ++V Y LID + +
Sbjct: 498 KVCPPDIATYNLVIQGLGKMGRADLASSVLDKLMKQGGYL-DIVMYNTLIDALGKAGRID 556
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA L + SG PD YN +++
Sbjct: 557 EANNLFEQMKISGLNPDVVTYNIMIE 582
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMR----ASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
YN + LTT +M+ AS + P+L TY LI +C +++A+ +
Sbjct: 83 YNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNSLIHVLCLAGKVKDAVIV 142
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
L SG +PD F Y +++G
Sbjct: 143 YEELKVSGHEPDAFTYRILIQG 164
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TYN L+ LCK YN ++ G + VTY+I++ +C +L EA+ LV
Sbjct: 226 WTYNILIDGLCKNGRAEAGYNLFCGLKKK-GQFVDAVTYSIVVLLLCRKGHLEEALHLVE 284
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ + GF D +++ +
Sbjct: 285 EMEERGFVVDLITITSLLIAF 305
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ + K R + ++M G++ + TY ILID +C
Sbjct: 188 PDTVVYNSLLDGMFKARKVMEACQLFEKMVQD-GVRASCWTYNILIDGLCKNGRAEAGYN 246
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L L G D Y+ ++
Sbjct: 247 LFCGLKKKGQFVDAVTYSIVV 267
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +N LVK CK L + + V++MR S PNLVTY+ L+D +C ++EA
Sbjct: 231 PNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFD 290
Query: 68 LVSAL-SDSGFKPDCFVYNTIMKGY 91
L + S PD YN ++ G+
Sbjct: 291 LFEEMVSRDHIVPDPLTYNVLINGF 315
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++ Y+ LV LCK L + +++ S G+KP+ VTYT LI+ +C EA+
Sbjct: 338 PNVYNYSALVDGLCKVGKLEDAKGVLAEIKGS-GLKPDAVTYTSLINFLCRNGKSDEAIE 396
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + ++G + D +N ++ G
Sbjct: 397 LLEEMKENGCQADSVTFNVLLGG 419
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ C+ N + M+++ G PN+ Y+ L+D +C L +A
Sbjct: 303 PDPLTYNVLINGFCRGGKPDRARNVIQFMKSN-GCYPNVYNYSALVDGLCKVGKLEDAKG 361
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+++ + SG KPD Y +++
Sbjct: 362 VLAEIKGSGLKPDAVTYTSLI 382
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 43/83 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC+ + ++ ++M + I P+ +TY +LI+ C A
Sbjct: 267 PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARN 326
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + +G P+ + Y+ ++ G
Sbjct: 327 VIQFMKSNGCYPNVYNYSALVDG 349
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ LC+ +++M+ + G + + VT+ +L+ +C EA
Sbjct: 371 LKPDAVTYTSLINFLCRNGKSDEAIELLEEMKEN-GCQADSVTFNVLLGGLCREGKFEEA 429
Query: 66 MRLVSALSDSG 76
+ +V L G
Sbjct: 430 LDMVEKLPQQG 440
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 18 KCLCKCRSLTTVYNFVDQMRA-------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
K L C +L N VD R L KPN+ + IL+ C +L A +V
Sbjct: 198 KALSTCLNLLLDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVE 257
Query: 71 ALSDSGFK-PDCFVYNTIMKG 90
+ +S F P+ Y+T+M G
Sbjct: 258 EMRNSEFSYPNLVTYSTLMDG 278
>gi|255660982|gb|ACU25660.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 350
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + +A++
Sbjct: 171 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLNPGVITYSMLMKGLCLDHKVEKALQ 229
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 230 LWNQVTSKGFKPDVQMHNILIHG 252
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 136 PNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNEMFGEAYN 194
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 195 LVKELLDKGLNPGVITYSMLMKG 217
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 67 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVV-DAFAYSAMINGLCKEANLDRAVSV 125
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 126 LNGMIKSGCKPNAHVYNTLING 147
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 237 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 294
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 295 RNALVIWARILRNGLEPDIISYNITLKG 322
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L +M G PNLVTY I+I +N + A
Sbjct: 439 LSPDTFTYSVMINCLGKAGHLAAADKLFCEM-IEQGCVPNLVTYNIMIALQAKARNYQNA 497
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 498 LKLYRDMQNAGFEPDKVTYSIVME 521
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ + L +QM+ + G +P+ VTY LID L AM
Sbjct: 371 PTVVTYNRLIHSYGRANYLNDAVEVFNQMQKA-GCEPDRVTYCTLIDIHAKAGFLNFAME 429
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +G PD F Y+ ++
Sbjct: 430 MYQRMQAAGLSPDTFTYSVMI 450
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 3 FKQLPP---DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
KQLP D +TY +V L + + + +DQM G +P +VTY LI +
Sbjct: 328 LKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRD-GCQPTVVTYNRLIHSYGRA 386
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +A+ + + + +G +PD Y T++
Sbjct: 387 NYLNDAVEVFNQMQKAGCEPDRVTYCTLI 415
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ M+ + G +P+ VTY+I+++ + ++ L EA
Sbjct: 476 PNLVTYNIMIALQAKARNYQNALKLYRDMQNA-GFEPDKVTYSIVMEVLGHSGYLDEAEA 534
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ S + + PD VY ++
Sbjct: 535 IFSEMKRKNWVPDEPVYGLLV 555
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ K L +M+A+ G+ P+ TY+++I+ + +L A +
Sbjct: 406 PDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAA-GLSPDTFTYSVMINCLGKAGHLAAADK 464
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + G P+ YN ++
Sbjct: 465 LFCEMIEQGCVPNLVTYNIMI 485
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK ++ ++ M+A G P+++TYTIL+D +C + A
Sbjct: 111 PNVITYSVLIDGLCKANRVSQAVELLESMKAR-GCSPDVITYTILVDGLCKESKVAAAWE 169
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + D+G P+ YN+++ G
Sbjct: 170 VLREMLDAGCVPNLVTYNSLLHG 192
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC+ R ++ + M G PN+VTY LID +C +++A
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCR-GCTPNVVTYGTLIDGLCKVGRVKDACA 239
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + D G PD +YN ++ G
Sbjct: 240 MLADMIDKGGTPDLMIYNMLING 262
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD+ YN L+ LCK + + + S GIKP++VTY+ +I +C +
Sbjct: 244 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA-VSGGIKPDVVTYSSVIYGLCRSN 302
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA RL+ + G PD +Y+T++ G
Sbjct: 303 RLDEACRLLLYVKSRGCPPDVILYSTLIDG 332
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ Y+ L+ LCK + ++ + M G ++VTY+ LID +C + EA
Sbjct: 320 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGD-GCDADVVTYSTLIDGLCKAGRVDEAH 378
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G P YN+++KG
Sbjct: 379 LLLARMVRMGTPPSTMTYNSLIKG 402
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY LV LCK + + + +M + G PNLVTY L+ +C + + +A+
Sbjct: 146 PDVITYTILVDGLCKESKVAAAWEVLREMLDA-GCVPNLVTYNSLLHGLCRARRVSDALA 204
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ G P+ Y T++ G
Sbjct: 205 LMRDMTCRGCTPNVVTYGTLIDG 227
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL-REA 65
PP TYN L+K LC L V++M S P+ VTY ILI +C + + A
Sbjct: 390 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS-NCAPSAVTYNILIHGMCRMERVDSAA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + D+G PD Y+ +++G
Sbjct: 449 LDYFQEMIDNGVIPDHITYSILLEG 473
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY+ L+ LCK + + + +M +G P+ +TY LI +C+ +L EA+ L
Sbjct: 357 DVVTYSTLIDGLCKAGRVDEAHLLLARM-VRMGTPPSTMTYNSLIKGLCDLNHLDEAIEL 415
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + S P YN ++ G
Sbjct: 416 VEEMERSNCAPSAVTYNILIHG 437
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TY+ ++ LC+ L + ++ S G P+++ Y+ LID +C + EA
Sbjct: 284 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK-SRGCPPDVILYSTLIDGLCKAGKVDEA 342
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L ++ G D Y+T++ G
Sbjct: 343 FDLYEVMTGDGCDADVVTYSTLIDG 367
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK + M+ S+ P++VTY L+D + T L AM
Sbjct: 8 PNVVTYNSLIDGLCKNNEPDRAQELFEHMK-SVECSPSMVTYNTLLDGLFRTGKLERAMA 66
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + D D +N ++ G
Sbjct: 67 LFQEMLDRR-SHDVISFNILVTG 88
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G +PN+VTY LID +C A L + P YNT++ G
Sbjct: 5 GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDG 54
>gi|255660996|gb|ACU25667.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 376
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLNPGVITYSMLMKGLCLDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLNPGVITYSMLMKG 243
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D T+ LV CK + + ++ G+ + Y+ +I+ +C NL +A+ +
Sbjct: 93 DSITFGILVHGFCKNGYINKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDKAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNAHVYNTLING 173
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGEMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ C + + M S+G+KP++VTY LI+ C + +A+
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASM-VSVGVKPDIVTYGTLINGYCRVSRMDDALA 572
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG P+ YN I++G
Sbjct: 573 LFKEMVSSGVSPNIITYNIILQG 595
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +YN ++ K Y+ +M GI P++VTY+ +I +C + + +AM
Sbjct: 198 PPDVVSYNTVLNGFFKEGDSDKAYSTYHEM-LDRGILPDVVTYSSIIAALCKAQAMDKAM 256
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + +G PDC YN+I+ GY
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGY 281
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ C + +MR+ G++PN+VTY+ L++ +C EA +
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD-GVEPNVVTYSSLMNYLCKNGRSTEARK 327
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G +PD Y T+++GY
Sbjct: 328 IFDSMTKRGLEPDIATYRTLLQGY 351
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N ++ CK + D M +G+KP+++TY LID C + EA +L++++
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASM 542
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G KPD Y T++ GY
Sbjct: 543 VSVGVKPDIVTYGTLINGY 561
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY L+ C+ + +M +S G+ PN++TY I++ + +T+ A
Sbjct: 549 PDIVTYGTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRRTAAAKE 607
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +++ SG + + YN I+ G
Sbjct: 608 LYVSITKSGTQLELSTYNIILHG 630
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ ++ LCK +++ ++ M + G+ P+ +TY ++ C++ +EA+
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIG 292
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +P+ Y+++M
Sbjct: 293 TLKKMRSDGVEPNVVTYSSLM 313
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D T+ L+K LC + + + V + LG P++ +Y L+ +C+ +EA+ L
Sbjct: 126 DAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185
Query: 69 VSALSDS---GFKPDCFVYNTIMKGY 91
+ ++D G PD YNT++ G+
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGF 211
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +N L+ K + +MR G+ PN+V Y +ID +C + ++ +A
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH-GLNPNVVCYGTVIDVLCKSGSVDDA 430
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + D G P+ VY +++ G
Sbjct: 431 MLYFEQMIDEGLTPNIIVYTSLIHG 455
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+I Y L+ LC C + +M GI N + + +ID+ C
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM-LDRGICLNTIFFNSIIDSHCKEG 495
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E+ +L + G KPD YNT++ G
Sbjct: 496 RVIESEKLFDLMVRIGVKPDIITYNTLIDG 525
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + TY L+ C C+ L + + + G + + +T+T L+ +C K +
Sbjct: 87 KVTPTVHTYAILIGCCCRAGRLDLGFAALGNV-VKKGFRVDAITFTPLLKGLCADKRTSD 145
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ G PD F YN ++KG
Sbjct: 146 AMDIVLRRMTELGCIPDVFSYNNLLKG 172
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y ++ LCK S+ + +QM G+ PN++ YT LI +C +A
Sbjct: 407 LNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHGLCTCDKWDKA 465
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G + +N+I+ +
Sbjct: 466 EELILEMLDRGICLNTIFFNSIIDSH 491
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK T D M G++P++ TY L+ L E
Sbjct: 304 PNVVTYSSLMNYLCKNGRSTEARKIFDSM-TKRGLEPDIATYRTLLQGYATKGALVEMHA 362
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G +PD V+N ++ Y
Sbjct: 363 LLDLMVRNGIQPDHHVFNILICAY 386
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ +L ++ +D M + GI+P+ + ILI + +
Sbjct: 335 RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN-GIQPDHHVFNILICAYAKQEKVD 393
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G P+ Y T++
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVI 418
Score = 34.3 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N ++ L KC + + A+ G+ P++ TY+++ +N+ +L E L +
Sbjct: 658 TFNIMIGALLKCGRMDEAKDLFAAHSAN-GLVPDVRTYSLMAENLIEQGSLEELDDLFLS 716
Query: 72 LSDSGFKPDCFVYNTIMK 89
+ ++G D + N+I++
Sbjct: 717 MEENGCSADSRMLNSIVR 734
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ YN ++ LCKCRS + + ++QM S P++VT+ +I C ++R
Sbjct: 180 RGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSR-FNPDVVTFNTMIAGFCREGDVR 238
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA++L+ G +P+ Y ++ G+
Sbjct: 239 EALKLLREAIRRGLEPNQLSYTPLIHGF 266
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+Q+ PD YN L+ LCK R L+ N +++M ++P+ YT LID + L
Sbjct: 320 RQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQ-KVQPDKFIYTTLIDGFVRSDKLS 378
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ + + PD YN ++KGY
Sbjct: 379 DARKIFEFMEEKAC-PDIVAYNVMIKGY 405
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P + TY ++ L + LT V + + +MRA G+ PN+ Y +I+ +C ++
Sbjct: 145 KGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRAR-GLSPNVQIYNTVINALCKCRSAS 203
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A +++ + S F PD +NT++ G+
Sbjct: 204 QASDMLNQMVKSRFNPDVVTFNTMIAGF 231
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++K CK + + MR + G P+ TYT L+D ++ ++R
Sbjct: 393 PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKA-GCIPDEFTYTTLVDGYAKKGDISASLR 451
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + KP+ F Y +++ GY
Sbjct: 452 LLCDMMKRRCKPNIFTYASLICGY 475
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA--------------SLGIKPNL 46
++ PP+ T ++LV L CR N D +A S G+ P +
Sbjct: 526 MLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRI 585
Query: 47 VTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
Y +I ++C L +AM L +S+ G PD + +++ G+
Sbjct: 586 SAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGF 630
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T L+ L + ++M A + P+ Y +LI +C + L A
Sbjct: 289 PDMITLGALIHGLVVSGQVNDALIVREKM-AERQVMPDANIYNVLISGLCKKRMLSAAKN 347
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + +PD F+Y T++ G+
Sbjct: 348 LLEEMLEQKVQPDKFIYTTLIDGF 371
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD FTY LV K ++ + D M+ KPN+ TY LI CN + A
Sbjct: 428 PDEFTYTTLVDGYAKKGDISASLRLLCDMMKRR--CKPNIFTYASLICGYCNIGDTYSAE 485
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L + + G P+ Y ++
Sbjct: 486 DLFAKMQSEGLFPNVVHYTVLI 507
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ Y+ L+ LCK R + + QM+ + P+ +TY ILID +C + ++
Sbjct: 428 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNILIDGLCKSGDVE 486
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + ++G KPD + YN ++ G
Sbjct: 487 AARAFFDEMLEAGCKPDVYTYNILISG 513
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LCK + F D+M + G KP++ TY ILI +C N A
Sbjct: 467 PDTITYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPDVYTYNILISGLCKAGNTDAACG 525
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ +S S FVY++++ G
Sbjct: 526 VLDDMSSSR-----FVYSSLVDG 543
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TY +V L K + + ++++ A+ G P + TY L++ +C L EA+ L
Sbjct: 258 DIHTYTAIVNWLAKNKKIQEAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDL 316
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + D+G PD Y +++ G
Sbjct: 317 LRKIVDNGCTPDVVTYTSLIDG 338
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK L + + ++ + G P++VTYT LID + K EA +
Sbjct: 292 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYTSLIDGLGKEKRSFEAYK 350
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ G D Y +++G
Sbjct: 351 LFKEMASRGLALDTVCYTALIRG 373
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + ++ L K + M A G+ PN V Y+ LI +C + + A+
Sbjct: 397 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALE 455
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + + PD YN ++ G
Sbjct: 456 MLAQMKKAFCTPDTITYNILIDG 478
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ L K + Y +M AS G+ + V YT LI + T + +A
Sbjct: 327 PDVVTYTSLIDGLGKEKRSFEAYKLFKEM-ASRGLALDTVCYTALIRGLLQTGKIPQASS 385
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ G PD +T++ G
Sbjct: 386 VYKTMTSHGCVPDVVTLSTMIDG 408
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 29/109 (26%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV-------------------- 47
PD++TYN L+ LCK + +D M +S + +LV
Sbjct: 502 PDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEME 561
Query: 48 --------TYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
T T LI ++C + EA+ L +A+ G P + YN+I+
Sbjct: 562 RSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSII 609
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ C R + + +M G+ P+L T+ +++ +C + + AM
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMD 211
Query: 68 LVSALSDS 75
A+ S
Sbjct: 212 HFEAVRRS 219
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +P T++ L+ L K + ++ + + G ++ TYT +++ + K ++
Sbjct: 218 RSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTN-GCTIDIHTYTAIVNWLAKNKKIQ 276
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ ++ +G P YN ++ G
Sbjct: 277 EAVALMEKITANGCTPTIATYNALLNG 303
>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LC + N QM S GIKP+ YT+LI + C+ L EA
Sbjct: 258 PNVRTYTVLIDALCGSGQKSEAMNLFKQMSES-GIKPDDCMYTVLIQSFCSGDTLDEASG 316
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + ++G P+ YN ++KG+
Sbjct: 317 LLEHMLENGLMPNVITYNALIKGF 340
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+ PD Y L++ C +L ++ M + G+ PN++TY LI
Sbjct: 282 LFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLEN-GLMPNVITYNALIKGF 340
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C KN+ +AM L+S + + PD YNT++ G
Sbjct: 341 CK-KNVHKAMGLLSKMLEQNLVPDLITYNTLIAG 373
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 36/126 (28%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT------------ 48
LI PD FTY + C+ + + + +M + G N V+
Sbjct: 181 LIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQN-GCHRNEVSYTQLIYGLFEAK 239
Query: 49 -----------------------YTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYN 85
YT+LID +C + EAM L +S+SG KPD +Y
Sbjct: 240 KIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYT 299
Query: 86 TIMKGY 91
+++ +
Sbjct: 300 VLIQSF 305
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI+T+N LV CK + +V + + G P+ TYT I C K + A
Sbjct: 151 VSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQA-GCDPDYFTYTSFITGHCRRKEVDAA 209
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ ++ +G + Y ++ G
Sbjct: 210 FKVFKEMTQNGCHRNEVSYTQLIYG 234
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ L + + + +M L + P++ T+ L++ C + EA + V+ L
Sbjct: 123 YNNLLSSLARFGLVEEMKRLYTEMLEDL-VSPDIYTFNTLVNGYCKLGYVVEAKQYVTWL 181
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+G PD F Y + + G+
Sbjct: 182 IQAGCDPDYFTYTSFITGH 200
>gi|341605689|gb|AEK82947.1| pentatricopeptide repeat superfamily protein [Capsella
grandiflora]
Length = 208
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP +F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 14 QVPPHVFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 70
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFK D Y+ ++ G
Sbjct: 71 AIRLLHRMIDEGFKXDVVTYSXVVNG 96
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + D+ TY+ +V LCK + ++ R + G+ N + Y+ LID +
Sbjct: 78 MIDEGFKXDVVTYSXVVNGLCKNGRVEEALDYFQTCRFN-GLAINSMFYSSLIDGLGKAG 136
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 137 RIDEAERLFEEMSEKGCTRDSYCYNALI 164
>gi|255660954|gb|ACU25646.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 375
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKKEMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKKEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKG 243
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRALYV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKYA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LCK +L + F ++M G+ L+TY++LI+ + + EA
Sbjct: 279 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD-GVNATLITYSVLINGLMKLEKFNEANS 337
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + GF P+ VYNT++ GY
Sbjct: 338 VLKETLEKGFTPNEVVYNTLIDGY 361
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD FTYN L+ +C+ L N ++ + S + PN+ TY ++ID C
Sbjct: 552 MVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK-SRDLVPNVYTYGVMIDGYCKAD 610
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E +L + L + + VYNT+++ Y
Sbjct: 611 KIEEGEKLFTELLTQNLELNSVVYNTLIRAY 641
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ Y L+ CK + V N + +M +S I PN +TYT++ID + +++
Sbjct: 695 EGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM-SSYDIHPNKITYTVMIDGYSKSGDMK 753
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L+ + G PD YN + G+
Sbjct: 754 TAAKLLHEMVGKGIVPDTVTYNVLTNGF 781
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + L + YN L++ C+ + + D MR S GI P TY+ LI +CN
Sbjct: 622 LLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR-SKGIPPTTATYSSLIHGMCNIG 680
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L+ + G P+ Y ++ GY
Sbjct: 681 RMEDAKCLIDEMRKEGLLPNVVCYTALIGGY 711
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PP TY+ L+ +C + +D+MR G+ PN+V YT LI C +
Sbjct: 660 KGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKE-GLLPNVVCYTALIGGYCKLGQMD 718
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + ++ +S P+ Y ++ GY
Sbjct: 719 KVVNVLQEMSSYDIHPNKITYTVMIDGY 746
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++ ++ + CK + M LG+ PN+VTY LI +C NL
Sbjct: 240 QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDME-KLGVSPNVVTYNNLIHGLCKHGNLD 298
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA R + G Y+ ++ G
Sbjct: 299 EAFRFKEKMVKDGVNATLITYSVLING 325
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+ LV LCK + ++ G NLVT LI +C T
Sbjct: 447 MLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK-GFGANLVTTNALIHGLCKTG 505
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++EA+RL+ + + GF D YNT++ G
Sbjct: 506 NMQEAVRLLKKMLERGFVLDKITYNTLISG 535
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K ++ T N L+ LCK ++ + +M G + +TY LI C
Sbjct: 482 LLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKM-LERGFVLDKITYNTLISGCCKEG 540
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E +L + G +PD F YN ++ G
Sbjct: 541 KVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 570
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY ++ K + T + +M GI P+ VTY +L + C + E +
Sbjct: 734 PNKITYTVMIDGYSKSGDMKTAAKLLHEMVGK-GIVPDTVTYNVLTNGFCKEGKIEEGFK 792
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +S G D Y T++ G+
Sbjct: 793 ICDYMSQEGLPLDEITYTTLVHGW 816
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P+ YN L+ CK +L M S GI PN VT +I C +
Sbjct: 345 KGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM-VSKGINPNSVTLNSIIQGFCKIGQME 403
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A ++ + GF + + TI+
Sbjct: 404 QAECILEEMLSRGFSINPGAFTTIIH 429
>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
Length = 607
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++TYN L+ CLCK + V + M G +P++VT+ L+ C EA
Sbjct: 413 LQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDD-GCQPSVVTFGTLVHGYCKAGKTDEA 471
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+++ ++ ++ +P+ +YNT++
Sbjct: 472 LKIFRSMGEARIQPNTVIYNTLI 494
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQ-MRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
DI N +V LCK L FVD+ MR G PN VTY L D C ++ A +
Sbjct: 202 DIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQ 261
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V + G P+ NTI+ G
Sbjct: 262 IVERMEKEGVTPNVITMNTIVGG 284
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD Y ++ L + L N M+ + G K + Y ILI C K L EA
Sbjct: 344 PPDAVMYFTMISGLTQAGRLVDACNIAASMKKA-GFKLDRKAYNILIGGFCRKKRLHEAH 402
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L + +G +PD + YNT++
Sbjct: 403 QLFEEMKGAGLQPDVYTYNTLL 424
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS-LGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ T N +V LC+ + +F + R + L + N VTY+ L+ + N+ AM
Sbjct: 273 PNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAM 332
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L ++D G+ PD +Y T++ G
Sbjct: 333 ELFHEMADQGYPPDAVMYFTMISG 356
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ C+ + L + ++M+ + G++P++ TY L+ +C + L+ +
Sbjct: 385 YNILIGGFCRKKRLHEAHQLFEEMKGA-GLQPDVYTYNTLLSCLCKAGDFSAVDELLGNM 443
Query: 73 SDSGFKPDCFVYNTIMKGY 91
D G +P + T++ GY
Sbjct: 444 IDDGCQPSVVTFGTLVHGY 462
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ L + +L + MR + +KP++VTY IL++ +C + +A++
Sbjct: 129 PDVSTFNSLLSALGRAGNLRGMTELFTSMREA-SVKPDIVTYGILLNRLCKAGLVGDALK 187
Query: 68 LVSALSDSGFK--PDCFVYNTIMKG 90
++ +S G D + NT++ G
Sbjct: 188 VLDRMSSPGSDVCADIVILNTVVDG 212
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ YN L+ LCK R + D+MR + + N+ TY L+ + + +
Sbjct: 482 RIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREN-NVPANVTTYNALLKGLQDKNMPEK 540
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A L+ + + PD + +M+
Sbjct: 541 AFELMDQMKEERCTPDYVTMDVLME 565
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY+ LV C ++ +M A G P+ V Y +I + L +A + ++
Sbjct: 314 TYSTLVSAFLHCNNVALAMELFHEM-ADQGYPPDAVMYFTMISGLTQAGRLVDACNIAAS 372
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ +GFK D YN ++ G+
Sbjct: 373 MKKAGFKLDRKAYNILIGGF 392
>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Brachypodium distachyon]
Length = 858
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN + +CKC ++ + M A +KPN+VTY+ LID + EA++L
Sbjct: 338 DIYTYNTFIDAICKCGNIELAMQVLLDMEAK-NVKPNVVTYSTLIDGYSKLEKYDEALKL 396
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ G + D YNT++ Y
Sbjct: 397 YEKMKSLGIQLDRVCYNTVLAIY 419
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +L PD T+N L+ + L D+M LGI ++ TY ID +C
Sbjct: 295 MLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEM-IHLGIGRDIYTYNTFIDAICKCG 353
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ AM+++ + KP+ Y+T++ GY
Sbjct: 354 NIELAMQVLLDMEAKNVKPNVVTYSTLIDGY 384
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + TY+ L+ K +N + S G+KP++V ++ ID + +
Sbjct: 473 RGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKES-GLKPDVVLFSSFIDTLAKNGLVE 531
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L++ +++ G KP+ YNTI+ +
Sbjct: 532 WALSLLNDMTEMGIKPNVVTYNTIIDAF 559
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+ K L V V MR G+ P+++TY+ LID +A +
Sbjct: 443 DTVTYNSLINGYGKQGRLDIVSFLVQDMRRR-GVAPSVLTYSTLIDIYSKAGMHGDAFNV 501
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+SG KPD ++++ +
Sbjct: 502 YLDFKESGLKPDVVLFSSFI 521
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1 LIFKQ--LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
L FK+ L PD+ ++ + L K + + ++ M +GIKPN+VTY +ID
Sbjct: 503 LDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDM-TEMGIKPNVVTYNTIIDAFGK 561
Query: 59 TKNLRE 64
+K L E
Sbjct: 562 SKVLSE 567
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TYN ++ +C +L MR S G +P+ T+ ILID C L EA
Sbjct: 216 ITPSAVTYNVVIHGMCLAYTLDEALELFKSMR-SKGCRPSRFTFNILIDAHCKRGKLDEA 274
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL+ ++D G PD Y+T++ G
Sbjct: 275 FRLLKRMTDDGHVPDVVTYSTLISG 299
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PPD ++Y L+ L K L Y +M S GI P+ VTY ++I +C L
Sbjct: 179 KDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDS-GITPSAVTYNVVIHGMCLAYTLD 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L ++ G +P F +N ++ +
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAH 265
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV C+ + M A G+ PN+VTYT L+ +C L EA
Sbjct: 358 PDVVTYNTLVHGHCRAGQTERARELLSDMVAR-GLAPNVVTYTALVSGLCKANRLPEACG 416
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + SG P+ F Y ++ G+
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGF 440
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TY LV LCK L QM++S G PNL TYT LI C+
Sbjct: 386 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS-GCAPNLFTYTALILGFCSAG 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
+ ++L + +G PD VY T+
Sbjct: 445 QVDGGLKLFGEMVCAGISPDHVVYGTL 471
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ LC + + ++ M KP +VT LI +C ++EA
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDM-VKRQCKPTVVTQNTLIHGLCKAGRIKEARE 346
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ A+ SG PD YNT++ G+
Sbjct: 347 VLDAMVSSGQSPDVVTYNTLVHGH 370
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
L+ + P Y L+ LC S F D R G P+ VTY ++ID C
Sbjct: 36 LLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRR--GCPPSPVTYNVMIDASCKR 93
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA L+ + + G PD YNT+M G
Sbjct: 94 GMLEEACDLIKKMIEDGHVPDVVTYNTVMDG 124
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP TYN ++ CK L + + +M G P++VTY ++D +C + + EA+
Sbjct: 77 PPSPVTYNVMIDASCKRGMLEEACDLIKKMIED-GHVPDVVTYNTVMDGLCKSSRVEEAL 135
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + + G P+ +NTI+ G
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILG 159
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P FT+N L+ CK L + + +M G P++VTY+ LI +C+ + +A
Sbjct: 253 PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDD-GHVPDVVTYSTLISGLCSIARVDDARH 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + KP NT++ G
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHG 334
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK + ++M LG PN ++ +I +C + +A +
Sbjct: 113 PDVVTYNTVMDGLCKSSRVEEALLLFNEME-RLGCTPNRRSHNTIILGLCQQSKIDQACQ 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + PD + Y ++ G
Sbjct: 172 VFHEMEAKDIPPDSWSYGILIDG 194
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L+ LCK + +++M + G+ PN VT+T LID C + A
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEANEMLNEMLDN-GLVPNGVTFTTLIDGHCKNGKVDLA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + + GF PD YNT++ G
Sbjct: 261 MEIYKQMLSQGFLPDLITYNTLIYG 285
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I+KQ+ PD+ TYN L+ LC+ L + V++M G+KP+ +TYT LID
Sbjct: 263 IYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMK-GLKPDKITYTTLIDGS 321
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +L L + + D Y ++ G
Sbjct: 322 CKEGDLEITFELRKRMIRENIRLDEVTYTALISG 355
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ + L + M A+ G++P++ TY++LI+ +C + EA
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAT-GVQPDVYTYSVLINGLCKESKMDEA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + D+G P+ + T++ G+
Sbjct: 226 NEMLNEMLDNGLVPNGVTFTTLIDGH 251
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP ++ +N L+ CK + D + ++P++V++ L++ +L E
Sbjct: 133 PPSLYFFNILMHRFCKEGEMRLAQMVFDAI-TKWSLRPSVVSFNTLMNGYIRLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ +G +PD + Y+ ++ G
Sbjct: 192 RLKSAMHATGVQPDVYTYSVLING 215
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ L+ CK + QM S G P+L+TY LI +C +L +A
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKVDLAMEIYKQM-LSQGFLPDLITYNTLIYGLCRRGDLGQA 295
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
LV + G KPD Y T++ G
Sbjct: 296 RDLVEEMIMKGLKPDKITYTTLIDG 320
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L PD TY L+ CK L + +M I+ + VTYT LI +C
Sbjct: 302 MIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRE-NIRLDEVTYTALISGLCREG 360
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A +++ + G KPD Y IM
Sbjct: 361 RAGDAEKMLREMLTVGLKPDNGTYTMIM 388
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D TY L+ LC+ + +M ++G+KP+ TYT++++ C T
Sbjct: 337 MIRENIRLDEVTYTALISGLCREGRAGDAEKMLREM-LTVGLKPDNGTYTMIMNEFCKTG 395
Query: 61 NLREAMRLVSALSDSGFKP 79
+++ A +L+ + +G P
Sbjct: 396 DVKTASKLLREMQRNGPVP 414
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+++ L K R V+ F ++ G P+L + IL+ C +R A + A++
Sbjct: 107 VLEHLMKLRYFRLVWGFYKEI-LECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKW 165
Query: 76 GFKPDCFVYNTIMKGY 91
+P +NT+M GY
Sbjct: 166 SLRPSVVSFNTLMNGY 181
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ C L + D+MR G+ N+VTY LI +C + + EA R
Sbjct: 254 PNVYTYNSMICRCCNDGKLNNAFELFDEMRER-GVACNVVTYNTLIGGLCQERRVLEAER 312
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G P+ YNT++ GY
Sbjct: 313 LMCRMKRDGLSPNLISYNTLIDGY 336
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ + ++ V + V +M A G+ P+ VTYTIL+D + + N+ +A +
Sbjct: 359 PSLATYNILIAGFSEAKNSAGVTDMVREMEAR-GLSPSKVTYTILMDALVRSDNIEKAFQ 417
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S++ +G D ++Y ++ G
Sbjct: 418 IYSSMEKAGLVADIYIYGVLIHG 440
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ LC+ R + + +M+ G+ PNL++Y LID C+ NL +A L
Sbjct: 290 NVVTYNTLIGGLCQERRVLEAERLMCRMKRD-GLSPNLISYNTLIDGYCSIGNLDKASSL 348
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + SG P YN ++ G+
Sbjct: 349 FNQMKSSGQSPSLATYNILIAGF 371
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P TY L+ L + ++ + M + G+ ++ Y +LI +C +++
Sbjct: 390 RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKA-GLVADIYIYGVLIHGLCVVGDMK 448
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L +L + KP+ +YNT++ GY
Sbjct: 449 EASKLFKSLDEMHLKPNDVIYNTMIYGY 476
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ +YN L+ C +L + +QM++S G P+L TY ILI KN
Sbjct: 322 LSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSS-GQSPSLATYNILIAGFSEAKNSAGV 380
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+V + G P Y +M
Sbjct: 381 TDMVREMEARGLSPSKVTYTILM 403
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++++ ++K C+ L + + QM +G+ PN+V YT LID C ++ +L
Sbjct: 150 DVYSFGIMIKGCCEVGYLDKGFEVLGQME-EMGLSPNVVVYTTLIDGCCKNGDIERGKQL 208
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + + + Y ++ G+
Sbjct: 209 FYKMGELDVVANQYTYTVLINGF 231
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 6 LPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L DI+ Y L+ LC + + ++ +D+M +KPN V Y +I C +
Sbjct: 427 LVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMH----LKPNDVIYNTMIYGYCKEGSS 482
Query: 63 REAMRLVSALSDSGFKPDCFVYNT 86
A+RL+ + ++G P+ YN+
Sbjct: 483 YRALRLLKEMGENGMVPNVASYNS 506
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L P+ YN ++ CK S + +M + G+ PN+ +Y I +C + E
Sbjct: 461 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGEN-GMVPNVASYNSTIXILCKDEKWTE 519
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A L+ + + G KP ++N I K
Sbjct: 520 AEVLLKDMIELGLKPSISIWNMISK 544
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY L+ K ++M+ + GI PN+ TY +I CN L A L
Sbjct: 222 YTYTVLINGFFKMGLKKDGIELYEKMKLT-GIVPNVYTYNSMICRCCNDGKLNNAFELFD 280
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G + YNT++ G
Sbjct: 281 EMRERGVACNVVTYNTLIGG 300
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TYN ++ + + + + +M+ I+PN+VTYT LI + +
Sbjct: 179 REISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGK-NIEPNVVTYTTLIKGYVSVDQVD 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+RLV + G KP+ Y+T++ G
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLLPG 264
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY L+K + V++M+ GIKPN +TY+ L+ +CN + +
Sbjct: 214 KNIEPNVVTYTTLIKGYVSVDQVDDALRLVEEMKG-YGIKPNAITYSTLLPGLCNAEKMS 272
Query: 64 EAMRLVSALSDSGFKP 79
EA ++ + D P
Sbjct: 273 EARSILKEMLDKYIAP 288
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P T+N ++ + T F + M+ S I P+++TY +I+ K
Sbjct: 141 MLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK-SREISPDVITYNTMINGYYRVK 199
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + +P+ Y T++KGY
Sbjct: 200 KMEEAEKYFVEMKGKNIEPNVVTYTTLIKGY 230
>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
Length = 535
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PPD + L+ LCK + N D++ G KP+L+TY LI +C + L+
Sbjct: 362 KNVPPDNMVTSTLIYWLCKNGMVREARNLFDELER--GFKPSLLTYNSLISGLCENEELQ 419
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA R+ + + G++P+ Y ++KG
Sbjct: 420 EAGRVWDDMVERGYEPNAMTYEALIKG 446
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ + N L+K L L +D+M LGI P++VTYT ++ C ++ A
Sbjct: 189 ITPNLVSCNILLKGLVGIGDLDAALKVLDEM-PGLGITPDVVTYTTVLSAYCGKGDIEGA 247
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + SG +PD +Y ++ GY
Sbjct: 248 QKLFDDIIASGRRPDVTMYTVLIDGY 273
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y L+ C+C +L +D+M A+ ++PN VTY+++I+ C + EA
Sbjct: 261 PDVTMYTVLIDGYCQCGNLQDAARIMDEMEAAR-VQPNEVTYSVVIEACCKEEKPIEARD 319
Query: 68 LVSALSDSGFKPD 80
+ + +G+ PD
Sbjct: 320 FMREMLGAGYVPD 332
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TY ++ C + D + AS G +P++ YT+LID C NL++A
Sbjct: 224 ITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIAS-GRRPDVTMYTVLIDGYCQCGNLQDA 282
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R++ + + +P+ Y+ +++
Sbjct: 283 ARIMDEMEAARVQPNEVTYSVVIEA 307
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ LC+ L D M G +PN +TY LI +C T E
Sbjct: 400 PSLLTYNSLISGLCENEELQEAGRVWDDM-VERGYEPNAMTYEALIKGLCKTGKPNEGAT 458
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G KP ++ ++
Sbjct: 459 VFEEMVSRGCKPSSLLFQVLV 479
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + ++N L+ L R L L I PNLV+ IL+ + +L A++
Sbjct: 155 PSVRSFNALLHSLVSARRLRLAAALFRAAPTKLYITPNLVSCNILLKGLVGIGDLDAALK 214
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G PD Y T++ Y
Sbjct: 215 VLDEMPGLGITPDVVTYTTVLSAY 238
>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Brachypodium distachyon]
Length = 857
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ +V CL K L Y +M + G PNLVTY I+I +N
Sbjct: 465 LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIEN-GCTPNLVTYNIIIALQAKARNYDNV 523
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + +GF+PD Y+ +M+
Sbjct: 524 VKLYRDMQVAGFRPDKITYSIVME 547
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ + L ++M + G +P+ VTY LID L AM
Sbjct: 397 PTVVTYNRIIHAYGRANYLREAVKVFEEMEEA-GYEPDRVTYCTLIDIHAKAGYLEVAMD 455
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + G PD F Y+ ++
Sbjct: 456 LYGRMQEVGLSPDTFTYSAMV 476
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY ++ L + R + N + +M KP +VTY +I LREA+++
Sbjct: 363 DGHTYTTMIGILGQARQFGIMRNLLHEMNRDR-CKPTVVTYNRIIHAYGRANYLREAVKV 421
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ ++G++PD Y T++
Sbjct: 422 FEEMEEAGYEPDRVTYCTLI 441
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ C L + D+MR G+ N+VTY LI +C + + EA R
Sbjct: 267 PNVYTYNSMICRCCNDGKLNNAFELFDEMRER-GVACNVVTYNTLIGGLCQERRVLEAER 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G P+ YNT++ GY
Sbjct: 326 LMCRMKRDGLSPNLISYNTLIDGY 349
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ + ++ V + V +M A G+ P+ VTYTIL+D + + N+ +A +
Sbjct: 372 PSLATYNILIAGFSEAKNSAGVTDMVREMEAR-GLSPSKVTYTILMDALVRSDNIEKAFQ 430
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ S++ +G D ++Y ++ G
Sbjct: 431 IYSSMEKAGLVADIYIYGVLIHG 453
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TYN L+ LC+ R + + +M+ G+ PNL++Y LID C+ NL +A L
Sbjct: 303 NVVTYNTLIGGLCQERRVLEAERLMCRMKRD-GLSPNLISYNTLIDGYCSIGNLDKASSL 361
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + SG P YN ++ G+
Sbjct: 362 FNQMKSSGQSPSLATYNILIAGF 384
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P TY L+ L + ++ + M + G+ ++ Y +LI +C +++
Sbjct: 403 RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKA-GLVADIYIYGVLIHGLCVVGDMK 461
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L +L + KP+ +YNT++ GY
Sbjct: 462 EASKLFKSLDEMHLKPNDVIYNTMIYGY 489
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ +YN L+ C +L + +QM++S G P+L TY ILI KN
Sbjct: 335 LSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSS-GQSPSLATYNILIAGFSEAKNSAGV 393
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+V + G P Y +M
Sbjct: 394 TDMVREMEARGLSPSKVTYTILM 416
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++++ ++K C+ L + + QM +G+ PN+V YT LID C ++ +L
Sbjct: 163 DVYSFGIMIKGCCEVGYLDKGFEVLGQME-EMGLSPNVVVYTTLIDGCCKNGDIERGKQL 221
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + + + Y ++ G+
Sbjct: 222 FYKMGELDVVANQYTYTVLINGF 244
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 6 LPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L DI+ Y L+ LC + + ++ +D+M +KPN V Y +I C +
Sbjct: 440 LVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMH----LKPNDVIYNTMIYGYCKEGSS 495
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMK 89
A+RL+ + ++G P+ YN+ ++
Sbjct: 496 YRALRLLKEMGENGMVPNVASYNSTIQ 522
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L P+ YN ++ CK S + +M + G+ PN+ +Y I +C + E
Sbjct: 474 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGEN-GMVPNVASYNSTIQILCKDEKWTE 532
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + + G KP ++N I K
Sbjct: 533 AEVLLKDMIELGLKPSISIWNMISKA 558
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY L+ K ++M+ + GI PN+ TY +I CN L A L
Sbjct: 235 YTYTVLINGFFKMGLKKDGIELYEKMKLT-GIVPNVYTYNSMICRCCNDGKLNNAFELFD 293
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G + YNT++ G
Sbjct: 294 EMRERGVACNVVTYNTLIGG 313
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + YN ++ LCK + + N +M GI+PN+VTY+ LI +CN +
Sbjct: 251 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSD 309
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + PD F ++ ++ +
Sbjct: 310 ASRLLSDMIERKINPDVFTFSALIDAF 336
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PP+I TYN L+ LCK L + ++ S ++P + TY I+I+ +
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGM 511
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L LS G KPD YNT++ G+
Sbjct: 512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P + +TY+ L+ C C+ L + +M LG +PN+VT + L++ C++K + EA
Sbjct: 112 IPHNHYTYSILINCFCRRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + +G++P+ +NT++ G
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHG 195
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ PD+FT++ L+ K L D+M I P++VTY+ LI+ C
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-VKRSIDPSIVTYSSLINGFCMHD 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA ++ + PD YNT++KG+
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 406
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY +V LCK +N +++M ++P ++ Y +ID +C K
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYK 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +A+ L + G +P+ Y++++
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLI 298
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P I+TYN +++ +CK + ++ + G+KP++V Y +I C + E
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEE 554
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 555 ADALFKEMKEDGTLPNSGCYNTLIRA 580
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ L + +M S G+ PN++TY L+D +C L
Sbjct: 425 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-VSDGVPPNIMTYNTLLDGLCKNGKLE 483
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM + L S +P + YN +++G
Sbjct: 484 KAMVVFEYLQRSKMEPTIYTYNIMIEG 510
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ L + +D+M A G +P+LVTY ++++ +C + A
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFN 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + +P +YNTI+ G
Sbjct: 243 LLNKMEQGKLEPGVLIYNTIIDG 265
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+I T + L+ C + ++ VDQM + G +PN VT+ LI + EAM
Sbjct: 148 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT-GYQPNTVTFNTLIHGLFLHNKASEAM 206
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD Y ++ G
Sbjct: 207 ALIDRMVAKGCQPDLVTYGVVVNG 230
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + +QM+ +LGI N TY+ILI+ C L A+
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILINCFCRRSQLPLALA 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++P+ ++++ GY
Sbjct: 138 VLGKMMKLGYEPNIVTLSSLLNGY 161
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY+ L+ CLC + + M I P++ T++ LID L
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLV 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + P Y++++ G+
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGF 371
>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04130, mitochondrial; Flags: Precursor
gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +Y +++C C+ VY + +M A+ G PN +TYT ++ ++ K EA+R
Sbjct: 257 PCVISYTTIIRCYCQQFEFIKVYEMLSEMEAN-GSPPNSITYTTIMSSLNAQKEFEEALR 315
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + SG KPD YN ++
Sbjct: 316 VATRMKRSGCKPDSLFYNCLI 336
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N L+ LCK + + + Q+++ I PN T+ I I C + EA+ +
Sbjct: 192 SMNLLLDTLCKEKRVEQARVVLLQLKSH--ITPNAHTFNIFIHGWCKANRVEEALWTIQE 249
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF+P Y TI++ Y
Sbjct: 250 MKGHGFRPCVISYTTIIRCY 269
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P+ T+N + CK + + +M+ G +P +++YT +I C +
Sbjct: 219 HITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGH-GFRPCVISYTTIIRCYCQQFEFIK 277
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++S + +G P+ Y TIM
Sbjct: 278 VYEMLSEMEANGSPPNSITYTTIM 301
>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
Length = 508
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +Y +++C C+ VY + +M A+ G PN +TYT ++ ++ K EA+R
Sbjct: 257 PCVISYTTIIRCYCQQFEFIKVYEMLSEMEAN-GSPPNSITYTTIMSSLNAQKEFEEALR 315
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + SG KPD YN ++
Sbjct: 316 VATRMKRSGCKPDSLFYNCLI 336
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N L+ LCK + + + Q+++ I PN T+ I I C + EA+ +
Sbjct: 192 SMNLLLDTLCKEKRVEQARVVLLQLKSH--ITPNAHTFNIFIHGWCKANRVEEALWTIQE 249
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF+P Y TI++ Y
Sbjct: 250 MKGHGFRPCVISYTTIIRCY 269
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P+ T+N + CK + + +M+ G +P +++YT +I C +
Sbjct: 219 HITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGH-GFRPCVISYTTIIRCYCQQFEFIK 277
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++S + +G P+ Y TIM
Sbjct: 278 VYEMLSEMEANGSPPNSITYTTIM 301
>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
Length = 572
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +Y +++C C+ VY + +M A+ G PN +TYT ++ ++ K EA+R
Sbjct: 321 PCVISYTTIIRCYCQQFEFIKVYEMLSEMEAN-GSPPNSITYTTIMSSLNAQKEFEEALR 379
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + SG KPD YN ++
Sbjct: 380 VATRMKRSGCKPDSLFYNCLI 400
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N L+ LCK + + + Q+++ I PN T+ I I C + EA+ +
Sbjct: 256 SMNLLLDTLCKEKRVEQARVVLLQLKSH--ITPNAHTFNIFIHGWCKANRVEEALWTIQE 313
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF+P Y TI++ Y
Sbjct: 314 MKGHGFRPCVISYTTIIRCY 333
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P+ T+N + CK + + +M+ G +P +++YT +I C +
Sbjct: 283 HITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGH-GFRPCVISYTTIIRCYCQQFEFIK 341
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++S + +G P+ Y TIM
Sbjct: 342 VYEMLSEMEANGSPPNSITYTTIM 365
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+I T+N L+ LC+ V+ + QM A G P++ Y +ID +C +L+ A
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQM-AEHGCTPDIRMYATIIDGICKEGHLKVAH 317
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G KP+ YNT++KG
Sbjct: 318 EILNRMPSYGLKPNVVCYNTLLKG 341
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P D T+N LV C+ + V ++QM G P+++TYT +I+ C +
Sbjct: 361 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVH-GCMPDVITYTTVINGFCKEGLID 419
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ +++ G KP+ Y ++KG
Sbjct: 420 EAVMLLKSMTACGCKPNTISYTIVLKG 446
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN ++K LC + V +++M + PN+VT+ LI +C
Sbjct: 225 PDVVSYNAVLKGLCMAKRWGCVQELMEEM-VRMACPPNIVTFNTLISYLCRNGLFERVHE 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ +++ G PD +Y TI+ G
Sbjct: 284 VLAQMAEHGCTPDIRMYATIIDG 306
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P + T+N L+ LCK + + QM + G P+L++Y+ +ID +
Sbjct: 463 MIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN-GCSPDLISYSTVIDGLGKAG 521
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
EA+ L++ + + G P+ +Y++I
Sbjct: 522 KTDEALELLNVMVNKGMSPNTIIYSSI 548
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y ++ +CK L + +++M S G+KPN+V Y L+ +C+ + E
Sbjct: 295 PDIRMYATIIDGICKEGHLKVAHEILNRM-PSYGLKPNVVCYNTLLKGLCSAERWEETEE 353
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + D D +N ++
Sbjct: 354 LLAEMFDKDCPLDDVTFNILV 374
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY ++ CK + + M A G KPN ++YTI++ +C+ + +A
Sbjct: 400 PDVITYTTVINGFCKEGLIDEAVMLLKSMTAC-GCKPNTISYTIVLKGLCSAERWVDAED 458
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S + G + +NT++
Sbjct: 459 LMSQMIQQGCPLNPITFNTLI 479
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +Y ++K LC + + QM G N +T+ LI+ +C + +A+
Sbjct: 435 PNTISYTIVLKGLCSAERWVDAEDLMSQM-IQQGCPLNPITFNTLINFLCKKGLVEQAIE 493
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G PD Y+T++ G
Sbjct: 494 LLKQMLVNGCSPDLISYSTVIDG 516
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ YN L+K LC + +M + VT+ IL+D C +
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDK-DCPLDDVTFNILVDFFCQNGLVDRV 386
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ + G PD Y T++ G+
Sbjct: 387 IELLEQMLVHGCMPDVITYTTVINGF 412
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN ++ LCK F+ M +S G PN TYTILI + + ++EA +
Sbjct: 576 DAVLYNAVISSLCKRGETERAIEFLAYMVSS-GCVPNESTYTILIRGLASEGFVKEAQEM 634
Query: 69 VSALSDSG 76
++ L G
Sbjct: 635 LTELCSKG 642
>gi|255660972|gb|ACU25655.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 376
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK + YN V ++ G+ P ++TY++L+ +C + A+
Sbjct: 197 PTIITYNTLINGLCKNKMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHRVERALX 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C K EA
Sbjct: 162 PNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNKMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKG 243
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN ++G
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLEG 348
>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
Group]
gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
Length = 618
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L PD FT + +V+ LC + F++ M+ S GI N Y +LID C +
Sbjct: 339 IIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQS-GIALNAAAYNVLIDEYCKSG 397
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL EA+ + +S+ G +P+ Y++++ G+
Sbjct: 398 NLDEALVTCTRMSEVGVEPNVVTYSSLIDGH 428
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P + TYN L+ + + DQM A I PN+VTYT +I +C
Sbjct: 164 MLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARR-IDPNVVTYTTMICALCEED 222
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L + ++G +P+ + YN +M +
Sbjct: 223 CIGDAEGLFLEMKEAGMRPNLYTYNALMSSH 253
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ CK +L +M + +G++PN+VTY+ LID + AM + + +
Sbjct: 386 YNVLIDEYCKSGNLDEALVTCTRM-SEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEM 444
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G +P+ Y ++ G+
Sbjct: 445 VAKGVEPNVVTYTALIHGH 463
Score = 42.0 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TY ++ LC+ + +M+ + G++PNL TY L+ +
Sbjct: 199 MVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEA-GMRPNLYTYNALMSSHFKRD 257
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N++ A+ L G P+ ++ T++ G
Sbjct: 258 NIKHALVFYYDLLKCGLVPNDVIFTTLIDG 287
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN L+ K ++ F + G+ PN V +T LID +C + EA
Sbjct: 241 PNLYTYNALMSSHFKRDNIKHALVFYYDL-LKCGLVPNDVIFTTLIDGLCQANRITEAKN 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + P VYN+++ G
Sbjct: 300 IFLDMPRYEVAPTVPVYNSLIHG 322
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ ++ LCK L Y + +MR + G P++VTYT +ID C L EA
Sbjct: 291 PSVVTYSAVIDGLCKADRLDDAYIVLQKMRRA-GCVPDVVTYTAIIDAFCKVGRLDEARE 349
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G D YN +++GY
Sbjct: 350 LFQRMHERGCASDVVAYNILIRGY 373
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ PD F Y ++ LCK L ++ +QM S G P+ VTYT+L+ ++
Sbjct: 40 MIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQS-GCLPDKVTYTVLVHSLFKAC 98
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ + G P+ Y T++ GY
Sbjct: 99 KWEQGHQIFEEMLSKGHSPELVTYATVVNGY 129
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY LV L K + ++M S G P LVTY +++ C + +A+
Sbjct: 82 PDKVTYTVLVHSLFKACKWEQGHQIFEEM-LSKGHSPELVTYATVVNGYCKAGRIDQALS 140
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ L +G P +Y+T++ G
Sbjct: 141 LMRRLKGTGRSPSGSLYSTLIDG 163
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + LV LCK R + +++M + P++VTY+ +ID +C L +A
Sbjct: 255 PGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYI 314
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G PD Y I+ +
Sbjct: 315 VLQKMRRAGCVPDVVTYTAIIDAF 338
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN ++ LCK ++ +DQ + P + T+L+D +C ++ + EA
Sbjct: 220 PDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCM-PGVPVCTVLVDGLCKSRRVEEACV 278
Query: 68 LVSALSDSGFK-PDCFVYNTIMKG 90
++ + ++G + P Y+ ++ G
Sbjct: 279 ILERMLEAGDRAPSVVTYSAVIDG 302
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 35 QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+M+A+ GI P +VT+ LI +C +A+++ + D KPD F+Y ++
Sbjct: 4 EMKAA-GITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVI 56
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY ++ CK L +M G ++V Y ILI C + EA+
Sbjct: 326 PDVVTYTAIIDAFCKVGRLDEARELFQRMHER-GCASDVVAYNILIRGYCRAAKVDEAIA 384
Query: 68 LVSALSDSG 76
++ ++ G
Sbjct: 385 MIEEMAGRG 393
>gi|255660956|gb|ACU25647.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 376
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKG 243
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + V +M G + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCK-NGYSDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRALYV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNVHVYNTLING 173
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++FKQ+ P+I TYN L+ LCK L + ++ S ++P + TY I+I+
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEG 514
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C + + L +LS G KPD +YNT++ G+
Sbjct: 515 MCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGF 550
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ +++TYN L+ C C+ ++ + +M LG +P++VT + L++ C+ K + +A
Sbjct: 116 ISHNLYTYNILINCFCRRSQISLALALLGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G++PD + T++ G
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHG 199
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY LI+ C K
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLINGFCKAK 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E + L +S G + Y T++ G+
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY+ L+ CLC + + M I PN+VT+ LID L
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDM-IERKINPNVVTFNALIDAFVKEGKLV 347
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGF 375
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ ++ Y+ ++ LCK R N +M G++PN++TY+ LI +CN + +
Sbjct: 255 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVRPNVITYSSLISCLCNYERWSD 313
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + P+ +N ++ +
Sbjct: 314 ASRLLSDMIERKINPNVVTFNALIDAF 340
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P IF +N L+ + K + V + ++M+ LGI NL TY ILI+ C + A+
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQ-RLGISHNLYTYNILINCFCRRSQISLALA 141
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G++P ++++ GY
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGY 165
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TYN L+ CK + + +M + G+ N VTYT LI +
Sbjct: 391 MISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM-SQRGLVGNTVTYTTLIHGFFQAR 449
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + G P+ YNT++ G
Sbjct: 450 DCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 479
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T+N L+ K L D+M I P++ TY+ LI+ C
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 379
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ YNT++ G+
Sbjct: 380 RLDEAKHMFELMISKDCFPNVVTYNTLINGF 410
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P I+TYN +++ +CK + ++ + G+KP+++ Y +I C E
Sbjct: 500 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPDVIIYNTMISGFCRKGLKEE 558
Query: 65 AMRLVSALSDSGFKPD 80
A L + + G PD
Sbjct: 559 ADALFRKMREDGPLPD 574
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L+ L + VD+M G +PNLVTY ++++ +C ++ A
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRM-VQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 246
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + + + + +Y+T++
Sbjct: 247 LLNKMEAAKIEANVVIYSTVI 267
>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
gi|223975267|gb|ACN31821.1| unknown [Zea mays]
Length = 469
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTYN LV +C+ + V QM + GI+PN+VTYT+L+D CN + EA+
Sbjct: 8 PDCFTYNTLVHGVCRRGIVDEALRLVKQMERA-GIRPNVVTYTMLVDGFCNASRVEEAVC 66
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + G Y +++ G
Sbjct: 67 VLERMKEKGVSATEATYRSLVHG 89
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ T+ L+ LC L +N +M + G++PN+ TY +LI +C+ ++ +A
Sbjct: 286 LMPDVITFTSLIDGLCHTHQLDDAFNCFSEM-SEWGVRPNVQTYNVLIHGLCSAGHVSKA 344
Query: 66 MRLVSALSDSGFKPDCFVYN 85
+ L++ + G PD + +N
Sbjct: 345 IELLNKMKMDGITPDAYSFN 364
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L+ K ++ F+ +M G+ P+++T+T LID +C+T L +A
Sbjct: 253 PNLVTFNTLINGYLKLGNVHDAKAFL-KMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFN 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
S +S+ G +P+ YN ++ G
Sbjct: 312 CFSEMSEWGVRPNVQTYNVLIHG 334
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ LC ++ +++M+ GI P+ ++ I + C + + +A +
Sbjct: 323 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMD-GITPDAYSFNAPILSFCRMRKIEKAQK 381
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +S G PD + YN ++K
Sbjct: 382 LFNDMSRYGVSPDSYTYNALIKA 404
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y ++K +C+ ++ + QM S G+ ++ +Y I+ID + A+ + +
Sbjct: 188 YIMIIKSFLRCKDISKANKYFSQM-VSDGLLSSVESYNIVIDCFAKAGEVERALETIKVM 246
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+SGF P+ +NT++ GY
Sbjct: 247 QESGFSPNLVTFNTLINGY 265
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+YN ++ C K + + M+ S G PNLVT+ LI+ N+ +A +
Sbjct: 222 SYNIVIDCFAKAGEVERALETIKVMQES-GFSPNLVTFNTLINGYLKLGNVHDAKAFLKM 280
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ + G PD + +++ G
Sbjct: 281 VMEHGLMPDVITFTSLIDG 299
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G +P+ TY L+ VC + EA+RLV + +G +P+ Y ++ G+
Sbjct: 5 GCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGF 55
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD +++N + C+ R + + M + G+ P+ TY LI +C+ + + EA
Sbjct: 356 ITPDAYSFNAPILSFCRMRKIEKAQKLFNDM-SRYGVSPDSYTYNALIKALCDERRVDEA 414
Query: 66 MRLVSAL 72
++ A+
Sbjct: 415 KEIILAM 421
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+ T+N +K LC ++QMR G PN+ TY ++D + N K REA+
Sbjct: 450 PPNTITFNTFIKGLCCSGKTEWAMKVLNQMR-QYGCAPNVTTYNEVLDGLFNAKRTREAL 508
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++V + + K + YNTI+ G+
Sbjct: 509 QIVGEIEEMEIKSNLVTYNTILSGF 533
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ L + V ++ + IK NLVTY ++ C+ + A++
Sbjct: 486 PNVTTYNEVLDGLFNAKRTREALQIVGEIE-EMEIKSNLVTYNTILSGFCHAGMFKGALQ 544
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L G KPD YNT++ Y
Sbjct: 545 IAGKLLVGGTKPDSITYNTVIYAY 568
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PD TYN ++ CK + T VD++ P++ TYT L+ VCN
Sbjct: 549 LLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWI 608
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + + + G P+ +N +++G
Sbjct: 609 GVDEAVVHLDKMINEGICPNRATWNALVRG 638
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ K L ++M + G PN+V YT ++D +C A+
Sbjct: 381 PNETTYSTLIDGFAKAGDLVGASEIWNKMITN-GCLPNVVVYTCMVDVLCRNSMFNHALH 439
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +++ P+ +NT +KG
Sbjct: 440 LIENMANGNCPPNTITFNTFIKG 462
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ ++ TYN ++ C ++ G KP+ +TY +I C ++
Sbjct: 518 EIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVG-GTKPDSITYNTVIYAYCKQGEVKT 576
Query: 65 AMRLVSALSDSGFK-PDCFVYNTIMKG 90
A++LV L+ G PD F Y +++ G
Sbjct: 577 AIQLVDRLTKKGEGYPDVFTYTSLLWG 603
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-SLGIKPNLVTYTILIDNVCNTKN 61
+K PD +Y +V +C+ V++ R S+ IK + Y LI+ C
Sbjct: 206 YKGCIPDAVSYTTVVSSMCRLGK-------VEEARELSMRIKSFVPVYNALINGFCREHK 258
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIM 88
+ E L + ++ G PD Y+T++
Sbjct: 259 MEEVFELFNEMAVEGIDPDVITYSTVI 285
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ YN L+ LC + + +M + G+ PN TY+ LID
Sbjct: 339 MIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERN-GVFPNETTYSTLIDGFAKAG 397
Query: 61 NLREAMRLVSALSDSGFKPDCFVY 84
+L A + + + +G P+ VY
Sbjct: 398 DLVGASEIWNKMITNGCLPNVVVY 421
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ + + PD+ TY+ ++ L + ++ + +M G PN+ T+T L+
Sbjct: 269 MAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLR-GCSPNVHTFTSLMKGYFMGG 327
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA+ L + + G +P+ YNT++ G
Sbjct: 328 RLCEALDLWNRMIQEGSEPNTVAYNTLIHG 357
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ + P++ T+ L+K L + ++M G +PN V Y LI +C+
Sbjct: 304 MFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQE-GSEPNTVAYNTLIHGLCSYG 362
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+ + + +G P+ Y+T++ G+
Sbjct: 363 KMVEAVSVSQKMERNGVFPNETTYSTLIDGF 393
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ L + + M+ GI+ N+ TY +L+ +C + A +
Sbjct: 141 PSVKIYNHVLDALLSENKFQMINGIYNNMKRD-GIELNVYTYNMLLKALCKNDRVDAARK 199
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ +S G PD Y T++
Sbjct: 200 LLAEMSYKGCIPDAVSYTTVV 220
>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
Length = 642
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 306 QVPPHAFS--LVIGGLCKEGKLNEGYTVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 362
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 363 AIRLLHRMIDEGFKPDVVTYSVVVNG 388
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R G+ N + Y+ LID +
Sbjct: 370 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFD-GLAINSMFYSSLIDGLGKAG 428
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 429 RVDEAERLFEEMSEKGCTRDSYCYNALIDAF 459
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P ++TYNFL+ L + + + M + IKP++VTY +I C ++A
Sbjct: 200 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGR-IKPDIVTYNTMIKGYCKAGQTQKA 258
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + + G + D Y T+++
Sbjct: 259 MEKLRDMETRGHEADKITYMTMIQA 283
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + N L+K K + + +M+ + GI+P L TY L++ + + +
Sbjct: 164 EFPMTVSAANALIKSFGKLGMVEELLWVWRKMKEN-GIEPTLYTYNFLMNGLVSAMFVDS 222
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A R+ + KPD YNT++KGY
Sbjct: 223 AERVFEVMESGRIKPDIVTYNTMIKGY 249
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 335 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 393
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ G + Y++++ G
Sbjct: 394 RVEEALDYFHTCRFDGLAINSMFYSSLIDG 423
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 32/82 (39%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + YN L+ K R + +M G + TYTIL+ + EA++L
Sbjct: 448 DSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKL 507
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ D G P + + G
Sbjct: 508 WDMMIDKGITPTAACFRALSTG 529
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+FTY +V LCK + + + +M I+ ++V YT +ID +CN K
Sbjct: 211 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYTTIIDALCNYK 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N+ +A+ L + + + G +P+ YN++++
Sbjct: 270 NVNDALNLFTEMDNKGIRPNVVTYNSLIR 298
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PPDI TY+ L+ LCK L + ++ S ++P++ TY I+I+ +
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS-KMEPDIYTYNIMIEGM 510
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L +LS G KP+ +Y T++ G+
Sbjct: 511 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGF 545
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY LI C K
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK 409
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E M L +S G + YNT+++G
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQG 439
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PDI+TYN +++ +CK + ++ + G+KPN++ YT +I C E
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVIIYTTMISGFCRKGLKEE 553
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 554 ADALFREMKEDGTLPNSGTYNTLIRA 579
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L++CLC + + M I PN+VT++ LID L
Sbjct: 284 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLV 342
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGF 370
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+++YN L+ C C+ L + +M LG +P++VT + L++ C+ K + EA+ L
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKM-MKLGYEPDIVTLSSLLNGYCHGKRISEAVAL 172
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + ++P+ +NT++ G
Sbjct: 173 VDQMFVMEYQPNTVTFNTLIHG 194
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ L + +M S G+ P+++TY+IL+D +C L
Sbjct: 424 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + L S +PD + YN +++G
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEG 509
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM + +PN VT+ LI + EA+
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFV-MEYQPNTVTFNTLIHGLFLHNKASEAV 205
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD F Y T++ G
Sbjct: 206 ALIDRMVARGCQPDLFTYGTVVNG 229
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L D+M I P++ TY+ LI+ C
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ YNT++KG+
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TYN L+K CK + + +M + G+ N VTY LI +
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYNTLIQGLFQAG 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + G PD Y+ ++ G
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K V + ++M+ +L I +L +Y ILI+ C L A+
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQ-NLRISYDLYSYNILINCFCRRSQLPLALA 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++PD ++++ GY
Sbjct: 137 VLGKMMKLGYEPDIVTLSSLLNGY 160
>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + + +M LG +P++VT+ L++ C+ EA
Sbjct: 110 ISHDLYSFTTLIDCFCRCARLSLALSCLGKM-MKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M LV + G++P+ +YNTI+
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTII 191
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR------ASLGIKPNLVTYTILID 54
+I + + P+I TYN L+ LC ++ +D+ + S G PN VTY LI+
Sbjct: 280 MIQRSVNPNIVTYNSLINGLC-------IHGLLDEAKKVLNVLVSKGFFPNAVTYNTLIN 332
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C K + + M+++ +S G D F YNT+ +GY
Sbjct: 333 GYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGY 369
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P I T+ LV C + VDQ+ LG +PN+V Y +ID++C + A+
Sbjct: 146 EPSIVTFGSLVNGFCHVNRFYEAMSLVDQI-VGLGYEPNVVIYNTIIDSLCEKGQVNTAL 204
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
++ + G +PD YN+++
Sbjct: 205 DVLKHMKKMGIRPDVVTYNSLI 226
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ YN ++ LC+ + T + + M+ +GI+P++VTY LI + ++ +
Sbjct: 181 EPNVVIYNTIIDSLCEKGQVNTALDVLKHMK-KMGIRPDVVTYNSLITRLFHSGTWGVSA 239
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R++S + G PD ++ ++ Y
Sbjct: 240 RILSDMMRMGISPDVITFSALIDVY 264
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTYN L + C+ + + +M S G+ P++ T+ IL+D +C+ + +A+
Sbjct: 358 DTFTYNTLYQGYCQAGKFSAAEKVLGRM-VSCGVHPDMYTFNILLDGLCDHGKIGKALVR 416
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ L S YN I+KG
Sbjct: 417 LEDLQKSKTVVGIITYNIIIKG 438
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++T+N L+ LC + ++ ++ S + ++TY I+I +C + +A
Sbjct: 390 VHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTV-VGIITYNIIIKGLCKADKVEDA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +L+ G PD Y T+M G
Sbjct: 449 WYLFCSLALKGVSPDVITYITMMIG 473
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD+ TYN L+ L + + D MR +GI P+++T++ LID L E
Sbjct: 215 IRPDVVTYNSLITRLFHSGTWGVSARILSDMMR--MGISPDVITFSALIDVYGKEGQLLE 272
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + + P+ YN+++ G
Sbjct: 273 AKKQYNEMIQRSVNPNIVTYNSLING 298
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K P+ TYN L+ CK + + + M G+ + TY L C
Sbjct: 315 LVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRD-GVDGDTFTYNTLYQGYCQAG 373
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++ + G PD + +N ++ G
Sbjct: 374 KFSAAEKVLGRMVSCGVHPDMYTFNILLDG 403
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + + LGI +L ++T LID C L A+
Sbjct: 77 PSIVDFSRLLIAIAKLNKYEAVISLFRHLEM-LGISHDLYSFTTLIDCFCRCARLSLALS 135
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + GF+P + +++ G+
Sbjct: 136 CLGKMMKLGFEPSIVTFGSLVNGF 159
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD +TYN L+ K + + +M+A + P+ TY++LI +C++
Sbjct: 407 MLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKAR-KLTPSPFTYSVLISGLCHSS 465
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L++A ++ + +G KP+ F+Y T++K Y
Sbjct: 466 DLQKANEVLDQMIRNGVKPNVFMYGTLIKAY 496
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ P++FTYN + LC+ ++ V ++ G+ P+ TYT+L+D C K +
Sbjct: 270 KECKPNLFTYNAFIGGLCQTGAVDEALE-VKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + ++ SG P+ F Y ++ G+
Sbjct: 329 EAKLIFESMPSSGLNPNRFTYTALIDGF 356
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV--CNTKNLREA 65
PD+F YN L+ CK + D+M + GI PN+V Y LI++ C + NL EA
Sbjct: 659 PDVFLYNSLISGFCKEGDIEKASQLYDEMLHN-GINPNIVVYNTLINDYGYCKSGNLTEA 717
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L + G PD ++Y ++ G
Sbjct: 718 FKLFDEMISKGISPDGYIYCILIDG 742
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
LIF+ +P P+ FTY L+ K ++ D+M + G+K N+VTY +I
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEM-ITRGLKLNVVTYNAMIGG 390
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +AM L + + +G +PD + YN ++ GY
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGY 426
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD++TY ++K CK + + +M KPNL TY I +C T
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE--CKPNLFTYNAFIGGLCQTG 290
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+ + + + G PD Y ++ G+
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+F YN L+ LC+ + + + M GIKPN TY I+ +
Sbjct: 512 MIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDM-GEKGIKPNAHTYGAFINLYSKSG 570
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A R + SG P+ +Y ++KG+
Sbjct: 571 EIQVAERYFKDMLSSGIVPNNVIYTILIKGH 601
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TY + K + + M +S GI PN V YTILI C+ N
Sbjct: 550 KGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSS-GIVPNNVIYTILIKGHCDVGNTV 608
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ + + G PD Y+ I+
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAII 633
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++F Y L+K + + M A+ G+ P+L Y LI +C K
Sbjct: 477 MIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIAN-GVLPDLFCYNCLIIGLCRAK 535
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L+ + + G KP+ Y + Y
Sbjct: 536 KVEEAKMLLVDMGEKGIKPNAHTYGAFINLY 566
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+N L+ CK + D M + PN+VTYTILID + + EA +L
Sbjct: 769 AFNSLIDSFCKHGKVIEARELFDDM-VDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 827
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ P+ Y +++ Y
Sbjct: 828 METRNIIPNTLTYTSLLLSY 847
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 1 LIFKQLPPDIFTYNFLVK--CLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
++ + P+I YN L+ CK +LT + D+M S GI P+ Y ILID
Sbjct: 687 MLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEM-ISKGISPDGYIYCILIDGCGK 745
Query: 59 TKNLREAMRL 68
NL +A+ L
Sbjct: 746 EGNLEKALSL 755
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
KQ+ P++ TYN L+ LCK ++ +D M G +P+++TY+ ++D +C +
Sbjct: 379 KQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDR-GQQPDIITYSSILDALCKNHLVD 437
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L+ L D G +P+ + Y ++ G
Sbjct: 438 KAIALLIKLKDQGIRPNMYTYTILIDG 464
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ +I TY+ L+ C L ++M S I P++ T+ IL+D C
Sbjct: 236 MVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKM-TSENINPDVYTFNILVDAFCKEG 294
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + G KPD YN++M GY
Sbjct: 295 RVKEAKNGLAMMMKQGIKPDIVTYNSLMDGY 325
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++T+N LV CK + N + M GIKP++VTY L+D C +
Sbjct: 274 ENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQ-GIKPDIVTYNSLMDGYCLVNEVN 332
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +++ +S G YN ++ G+
Sbjct: 333 MAKSILNTMSHRGVTATVRSYNIVINGF 360
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ ++ LCK + + +++ GI+PN+ TYTILID +C L +A
Sbjct: 418 PDIITYSSILDALCKNHLVDKAIALLIKLKDQ-GIRPNMYTYTILIDGLCKGGRLEDARN 476
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L G+ Y +++G+
Sbjct: 477 IFEDLLVKGYNLTVNTYTVMIQGF 500
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+YN ++ CK + + +M I PN++TY LID +C + + A+ L+
Sbjct: 352 SYNIVINGFCKIKMVDQAMKLFKEMHHK-QIFPNVITYNSLIDGLCKSGRISYALELIDL 410
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ D G +PD Y++I+
Sbjct: 411 MHDRGQQPDIITYSSILDA 429
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ + ++ L K + TV + +M GIKPN V + ILI+ C + A
Sbjct: 68 PPDM-EFGQILGSLVKSKHYHTVLSLFQKMEYR-GIKPNFVNFNILINCFCQLGLIPFAF 125
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G++PD NT +KG+
Sbjct: 126 SVLAKILKMGYEPDTITLNTFIKGF 150
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+++TY L+ LCK L N + + G + TYT++I C+
Sbjct: 449 QGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVK-GYNLTVNTYTVMIQGFCSHGLFD 507
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ L+S + D+ PD Y I+
Sbjct: 508 EALSLLSKMKDNSCIPDAITYEIII 532
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 LIFKQ-LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ KQ + PDI TYN L+ C + + ++ M + G+ + +Y I+I+ C
Sbjct: 305 MMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTM-SHRGVTATVRSYNIVINGFCKI 363
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
K + +AM+L + P+ YN+++ G
Sbjct: 364 KMVDQAMKLFKEMHHKQIFPNVITYNSLIDG 394
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T N +K C + NF D++ A LG + V+Y LI+ +C R A+
Sbjct: 137 EPDTITLNTFIKGFCLKGQIHQALNFHDKLVA-LGFHLDQVSYGTLINGLCKVGETRAAL 195
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ + + D +Y+TI+
Sbjct: 196 ELLRRVDGKLVQLDVVMYSTII 217
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
++ + P+ +N L+ C C+ + ++ + ++ +G +P+ +T I C +
Sbjct: 98 YRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKI-LKMGYEPDTITLNTFIKGFCLKGQI 156
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L GF D Y T++ G
Sbjct: 157 HQALNFHDKLVALGFHLDQVSYGTLING 184
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK + ++ L ++ ++V Y+ +ID++C KN+ +A L
Sbjct: 174 DQVSYGTLINGLCKVGETRAALELLRRVDGKL-VQLDVVMYSTIIDSMCKDKNVNDAFDL 232
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + + Y+ ++ G+
Sbjct: 233 YSEMVSRRISSNIVTYSALISGF 255
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P ++ T N L+ C C+C L+ +F+ +M LG +P++VT+ L++ C + +A
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKM-MKLGHEPDIVTFGSLLNGFCRGDRIYDA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + + G++P+ +YNTI+ G
Sbjct: 171 LYMFDRMVEMGYEPNVVIYNTIIDG 195
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ YN ++ LCK + + + +++M GI+P+ VTY LI +CN+ +A
Sbjct: 183 EPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVD-GIRPDAVTYNSLISGLCNSGRWDDAT 241
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
R+VS ++ PD F +N ++
Sbjct: 242 RMVSCMTKREIYPDVFTFNALI 263
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T+ L+ C+ + D+M +G +PN+V Y +ID +C +K + A+
Sbjct: 148 EPDIVTFGSLLNGFCRGDRIYDALYMFDRM-VEMGYEPNVVIYNTIIDGLCKSKQVDNAL 206
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G +PD YN+++ G
Sbjct: 207 DLLNRMEVDGIRPDAVTYNSLISG 230
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F +PP+I TYN L+ LC + + M+ S G+ ++VTY I+I +C
Sbjct: 387 MVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKS-GMDADIVTYNIIIRGMCKAG 445
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L +L+ G PD + Y +M G
Sbjct: 446 EVADAWDLYCSLNLKGLTPDIWTYTAMMLG 475
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI TY+ L+ LC L M S G P++VTY+ILI+ C +K
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFM-VSKGCFPDVVTYSILINGYCKSK 340
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ M+L +S G + Y +++GY
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTVLIQGY 371
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
+++ PD+FT+N L+ K ++ ++M R SL P++VTY++LI +C L
Sbjct: 250 REIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL--DPDIVTYSLLIYGLCMYSRL 307
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G PD Y+ ++ GY
Sbjct: 308 DEAEQMFGFMVSKGCFPDVVTYSILINGY 336
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L++ C+ L M G+ PN++TY +L+ +C+ + +A+ +++
Sbjct: 363 TYTVLIQGYCRAGKLNVAEEIFKWM-VFCGVPPNIITYNVLLHGLCDNGKIEKALVILAD 421
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ SG D YN I++G
Sbjct: 422 MQKSGMDADIVTYNIIIRG 440
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY+ L+ CK + + +M + G+ N VTYT+LI C
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM-SQRGVVRNTVTYTVLIQGYCRAG 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A + + G P+ YN ++ G
Sbjct: 376 KLNVAEEIFKWMVFCGVPPNIITYNVLLHG 405
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K + V +QM+ LGI NL T IL++ C L A+
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQM-LGIPHNLCTCNILLNCFCRCSQLSLALS 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G +PD + +++ G+
Sbjct: 138 FLGKMMKLGHEPDIVTFGSLLNGF 161
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ LC V M I P++ T+ LID + EA
Sbjct: 217 IRPDAVTYNSLISGLCNSGRWDDATRMVSCM-TKREIYPDVFTFNALIDACVKEGRISEA 275
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + PD Y+ ++ G
Sbjct: 276 EELYEEMIRRSLDPDIVTYSLLIYG 300
>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 376
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLISGLCKKEMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I YN L+ L +M ++ P ++TY LI +C + EA
Sbjct: 162 PNIHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLISGLCKKEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKG 243
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRALYV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LTGMIKSGCKPNIHVYNTLING 173
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ +N L+ LC + + + D R PNLV++ L++ ++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRRKCA--PNLVSHNTLMEGFYKDGDI 320
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ + + + +G +PD YN +KG
Sbjct: 321 RNALVIWARILRNGLEPDIISYNITLKG 348
>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 376
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLDPGVITYSMLMKGLCLDHRVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN L+ L +M ++ P ++TY LI+ +C + EA
Sbjct: 162 PNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPTIITYNTLINGLCKNEMFGEAYN 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV L D G P Y+ +MKG
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKG 243
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRALSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNDMIKSGCKPNVHVYNTLING 173
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ +N L+ LC + + M PNLV++ L++ ++R
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMN-HWKCAPNLVSHNTLMEGFYKDGDIR 321
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + + +G +PD YN +KG
Sbjct: 322 NALVIWARILRNGLEPDIISYNITLKG 348
>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I PD+FTYN L+ C + V + S G P++V +T LI C K
Sbjct: 313 MILTGEGPDVFTYNSLIHIYCLQNKMNEAMR-VFHLMVSRGRLPDIVVFTSLIHGWCKDK 371
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ +AM L+ +S GF PD + T++ G+
Sbjct: 372 NINKAMHLLEEMSKMGFVPDVATWTTLIGGF 402
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ P++ Y+ ++ LCK ++ N +M G++PNLVTY LI +CN +
Sbjct: 211 RNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGK-GVRPNLVTYACLIQGLCNFGRWK 269
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ + G +PD + N ++ +
Sbjct: 270 EAGSLLDEMMKMGMRPDLQMLNILVDAF 297
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D++TY L+ LCK ++ +M KPN+V Y+ ++D +C + EA+
Sbjct: 179 PLDVYTYGVLINGLCKTGDTLAAVGWLRKMEER-NWKPNVVVYSTIMDGLCKDGLVSEAL 237
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L S ++ G +P+ Y +++G
Sbjct: 238 NLCSEMNGKGVRPNLVTYACLIQG 261
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY L++ LC + +D+M +G++P+L IL+D C +
Sbjct: 246 KGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEM-MKMGMRPDLQMLNILVDAFCKEGKVM 304
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ + +G PD F YN+++ Y
Sbjct: 305 QAKSVIGFMILTGEGPDVFTYNSLIHIY 332
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T ++ LCK L+ + M S + N+V Y+IL+D +C+ L A
Sbjct: 425 PNLQTCAVILDGLCKENLLSEAVSLAKAMEKS-NLDLNIVIYSILLDGMCSAGKLNAAWE 483
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S+L G + + ++Y ++KG
Sbjct: 484 LFSSLPGKGLQINVYIYTIMIKG 506
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D T N ++ CLC+ + + ++ + M LG++P ++T T LI+ +C N+ +A
Sbjct: 108 IEADTITLNIVINCLCRLKLVAFGFSVLGTM-FKLGLEPTVMTLTTLINGLCVQGNVAQA 166
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + + D + Y ++ G
Sbjct: 167 VGLADHMEKMWYPLDVYTYGVLING 191
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ N LV CK + + + M + G P++ TY LI C + EA
Sbjct: 283 MRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILT-GEGPDVFTYNSLIHIYCLQNKMNEA 341
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
MR+ + G PD V+ +++ G+
Sbjct: 342 MRVFHLMVSRGRLPDIVVFTSLIHGW 367
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +++ Y ++K LCK SL + + M + G PN TY + + + K +
Sbjct: 491 KGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEEN-GCLPNNCTYNVFVQGLLTKKEIA 549
Query: 64 EAMRLVSALSDSGFKPD 80
+++ ++ + D GF D
Sbjct: 550 RSIKYLTIMRDKGFSVD 566
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L +I Y+ L+ +C L + + G++ N+ YTI+I +C +L +A
Sbjct: 458 LDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGK-GLQINVYIYTIMIKGLCKQGSLDKA 516
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + ++G P+ YN ++G
Sbjct: 517 EDLLINMEENGCLPNNCTYNVFVQG 541
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA--SLGIKPNLVTYTILIDNVCN 58
L+ ++L PD++T+N + LC+ L TV + V+ + S G PNL +Y+IL+D +C
Sbjct: 388 LLQRRLCPDVYTFNAFLHGLCQ--RLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICR 445
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
L A+ + + G PD V+NT+++
Sbjct: 446 AGGLEVALEIFREMVSRGVAPDVVVFNTLIR 476
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK + D G P+ VTYT +ID +C + E
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G++PD Y ++ G+
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGF 267
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ P TY LV L K L ++QM G P L TYT++ID + +
Sbjct: 71 KKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQM-VEKGNSPTLKTYTVVIDGLSKAGRVE 129
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA R+ + +G +PD FVY ++KG
Sbjct: 130 EARRIFVDMLGNGCRPDAFVYTALIKG 156
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKPNLVTYTILIDNVCNTKNLRE 64
PD F Y L+K LCK Y + A P++VTYT LID +C + E
Sbjct: 145 PDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILE 204
Query: 65 AMRLVSALS-DSGFKPDCFVYNTIMKG 90
A ++ + + GF PD Y +I+ G
Sbjct: 205 ARQVFDDEAVERGFIPDAVTYTSIIDG 231
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN + LCK + + + +M + P VTYT L+D + L EAM
Sbjct: 40 PDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCL-PTTVTYTALVDGLLKAGRLDEAMA 98
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + G P Y ++ G
Sbjct: 99 VLEQMVEKGNSPTLKTYTVVIDG 121
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++ LCK + Y M G +VTY+ L+D C+ N+ A+ L
Sbjct: 294 TYNIILDGLCKAGRVAEAYATFLAMEER-GCVATVVTYSALMDGFCSEGNVSAAVELFRR 352
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ D G +P+ YN I++G
Sbjct: 353 MLDRGCEPNLVSYNIIIRG 371
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ LCK + +MR + G +P+ VTY LID K + +A R
Sbjct: 220 PDAVTYTSIIDGLCKLGRVEEGCERFHEMR-NRGYEPDAVTYAALIDGFMKAKMIPKAHR 278
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + SG YN I+ G
Sbjct: 279 VYRQMLQSGTVVSTVTYNIILDG 301
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
P++V +T++I+ +C K L EA ++ +G +PD YN + G
Sbjct: 5 PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDG 51
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TY+ L+ C +++ +M G +PNLV+Y I+I +C L +A
Sbjct: 327 VVTYSALMDGFCSEGNVSAAVELFRRM-LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYF 385
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
L PD + +N + G
Sbjct: 386 EKLLQRRLCPDVYTFNAFLHG 406
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+FTY +V LCK + + + +M I+ ++V YT +ID +CN K
Sbjct: 195 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYTTIIDALCNYK 253
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N+ +A+ L + + + G +P+ YN++++
Sbjct: 254 NVNDALNLFTEMDNKGIRPNVVTYNSLIR 282
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PPDI TY+ L+ LCK L + ++ S ++P++ TY I+I+ +
Sbjct: 436 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS-KMEPDIYTYNIMIEGM 494
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L +LS G KP+ +Y T++ G+
Sbjct: 495 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGF 529
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY LI C K
Sbjct: 335 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK 393
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E M L +S G + YNT+++G
Sbjct: 394 RVEEGMELFREMSQRGLVGNTVTYNTLIQG 423
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L++CLC + + M I PN+VT++ LID L
Sbjct: 268 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLV 326
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 327 EAEKLYDEMIKRSIDPDIFTYSSLINGF 354
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PDI+TYN +++ +CK + ++ + G+KPN++ YT +I C E
Sbjct: 479 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVIIYTTMISGFCRKGLKEE 537
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 538 ADALFREMKEDGTLPNSGTYNTLIRA 563
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+++YN L+ C C+ L + +M LG +P++VT + L++ C+ K + EA+ L
Sbjct: 98 DLYSYNILINCFCRRSQLPLALAVLGKM-MKLGYEPDIVTLSSLLNGYCHGKRISEAVAL 156
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + ++P+ +NT++ G
Sbjct: 157 VDQMFVMEYQPNTVTFNTLIHG 178
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ L + +M S G+ P+++TY+IL+D +C L
Sbjct: 408 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLE 466
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + L S +PD + YN +++G
Sbjct: 467 KALVVFEYLQKSKMEPDIYTYNIMIEG 493
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM + +PN VT+ LI + EA+
Sbjct: 131 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFV-MEYQPNTVTFNTLIHGLFLHNKASEAV 189
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD F Y T++ G
Sbjct: 190 ALIDRMVARGCQPDLFTYGTVVNG 213
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L D+M I P++ TY+ LI+ C
Sbjct: 300 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 358
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ YNT++KG+
Sbjct: 359 RLDEAKHMFELMISKDCFPNVVTYNTLIKGF 389
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TYN L+K CK + + +M + G+ N VTY LI +
Sbjct: 370 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYNTLIQGLFQAG 428
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + G PD Y+ ++ G
Sbjct: 429 DCDMAQKIFKKMVSDGVPPDIITYSILLDG 458
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K V + ++M+ +L I +L +Y ILI+ C L A+
Sbjct: 62 PSIVEFNKLLSAIAKMNKFDLVISLGERMQ-NLRISYDLYSYNILINCFCRRSQLPLALA 120
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++PD ++++ GY
Sbjct: 121 VLGKMMKLGYEPDIVTLSSLLNGY 144
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK + +T F+ M +P +V Y+ +ID++C + L EA+
Sbjct: 157 PDVLTYGTLINGLCKVGNTSTAIRFLRSMEQR-NCRPTVVVYSTIIDSLCKDRQLTEALS 215
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S + G P+ F Y++++ G
Sbjct: 216 LFSDMLAKGISPNNFTYSSLIHG 238
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD TYN L+ LC L +M G P+LVTY IL D +C L
Sbjct: 363 QGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEM-VVYGQIPDLVTYRILFDYLCKNHRLA 421
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM L+ + + PD +Y+ +M G
Sbjct: 422 EAMVLLKVIEGTNLDPDIHIYSIVMDG 448
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI Y+ ++ +C+ L + ++ +S G+ P++ TYTI+I+ +C L EA
Sbjct: 435 LDPDIHIYSIVMDGMCRAGELEAARDLFSKL-SSKGLHPDVRTYTIMINGLCQQGLLAEA 493
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + ++G P+ YN I +G+
Sbjct: 494 SKLFGEMDENGCSPNACTYNLITRGF 519
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L PD+ TYN L+ C + N D M G P++++YT LI+ C +
Sbjct: 290 MIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM-VRKGCVPSVISYTTLINGYCKIQ 348
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L +S G PD YNT++ G
Sbjct: 349 IMDKAMGLFEEMSQQGLIPDTVTYNTLIHG 378
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P + +T N L+ C L ++ + + LG +P+ T+T LI +C + EA
Sbjct: 85 IPHNTYTLNILINSFCHLNRLGFAFSVLGDI-LKLGYQPSTATFTTLIRGLCVEGKIGEA 143
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++L ++ GF+PD Y T++ G
Sbjct: 144 LQLFDKMTGEGFQPDVLTYGTLING 168
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + Y+ ++ LCK R LT + M A GI PN TY+ LI +C + +EA+R
Sbjct: 192 PTVVVYSTIIDSLCKDRQLTEALSLFSDMLAK-GISPNNFTYSSLIHGLCILGHWKEAIR 250
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L A+ PD +NT++
Sbjct: 251 LFYAMIHRKIMPDQLTFNTLV 271
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ PD T+N LV LCK + + VD M S +KP++VTY L+D C
Sbjct: 255 MIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQS-DLKPDVVTYNSLMDGHCLRS 313
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + + + G P Y T++ GY
Sbjct: 314 EMGKTVNVFDTMVRKGCVPSVISYTTLINGY 344
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P T+ L++ LC + D+M G +P+++TY LI+ +C N A+R
Sbjct: 122 PSTATFTTLIRGLCVEGKIGEALQLFDKMTGE-GFQPDVLTYGTLINGLCKVGNTSTAIR 180
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ ++ +P VY+TI+
Sbjct: 181 FLRSMEQRNCRPTVVVYSTII 201
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + +Y L+ CK + + ++M + G+ P+ VTY LI +C+
Sbjct: 325 MVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEM-SQQGLIPDTVTYNTLIHGLCHVG 383
Query: 61 NLREAMRLVSALSDSGFKPDCFVY 84
LR+A+ L + G PD Y
Sbjct: 384 RLRDAIALFHEMVVYGQIPDLVTY 407
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I ++ L+ + + + +TV + QM S GI N T ILI++ C+ L A
Sbjct: 51 PPSIVDFSKLLTSITRMKHYSTVLSLYKQMD-SFGIPHNTYTLNILINSFCHLNRLGFAF 109
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
++ + G++P + T+++G
Sbjct: 110 SVLGDILKLGYQPSTATFTTLIRG 133
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TY ++ LC+ L +M + G PN TY ++
Sbjct: 468 KGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDEN-GCSPNACTYNLITRGFLRNNETL 526
Query: 64 EAMRLVSALSDSGFKPD 80
A++L + GF D
Sbjct: 527 RAIQLFQEMLSRGFSID 543
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +YN ++ LCK + L +M+ KPN VT++ LID C ++ E
Sbjct: 160 LIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGG-ECKPNSVTFSALIDGFCKNGDVEEG 218
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G + D FVY+ ++ G+
Sbjct: 219 FGLLEEMEKMGLEGDVFVYSALISGF 244
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTV----YNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ PD+F +N +++ LCK R L Y V++ G N+VTY ILID +
Sbjct: 406 HIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVER-----GFPSNIVTYNILIDGYLSAG 460
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A+ L DSG P+ Y ++ G
Sbjct: 461 KLTKALELWKDAVDSGISPNAATYTVLING 490
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQ-MRASLGIKPNLVTYTILIDNVCNTKNL 62
K PD+ TY+ LVK LC + + ++ M IKP++ + ++I +C + L
Sbjct: 368 KGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRL 427
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
R A R+ + + GF + YN ++ GY
Sbjct: 428 RHAKRVYYTMVERGFPSNIVTYNILIDGY 456
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ TYN ++ LCK + ++ M A G KP++VTY+ L+ +C
Sbjct: 330 MVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETM-AKKGKKPDVVTYSTLVKGLCGVG 388
Query: 61 NLREAMRLVSALSDSGF--KPDCFVYNTIMK 89
+ EA+ L++ L F KPD F +N +++
Sbjct: 389 KIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQ 419
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+ Y L L K + +D M G +PN VTY +I+ +C + +
Sbjct: 299 KVRPDVVAYTVLADGLSKNGRASDAIKVLDLM-VKRGEEPNNVTYNAIINGLCKEGRVDD 357
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ ++ G KPD Y+T++KG
Sbjct: 358 ALGILETMAKKGKKPDVVTYSTLVKG 383
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TY+ L+ LCK + +D M ++P++V YT+L D +
Sbjct: 260 MLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTM-TGCKVRPDVVAYTVLADGLSKNG 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++++ + G +P+ YN I+ G
Sbjct: 319 RASDAIKVLDLMVKRGEEPNNVTYNAIING 348
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P +I TYN L+ LT S GI PN TYT+LI+ +C +
Sbjct: 437 MVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDS-GISPNAATYTVLINGLCKMQ 495
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A L + SG +P YNT+M
Sbjct: 496 MLSIAKGLFNKKRASGTRPTVSEYNTLM 523
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TY L+ LCK + L+ ++ RAS G +P + Y L+ ++C ++ +A
Sbjct: 477 ISPNAATYTVLINGLCKMQMLSIAKGLFNKKRAS-GTRPTVSEYNTLMASLCRESSVEQA 535
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + ++ PD +N I+ G
Sbjct: 536 RNLFQEMRNANHDPDVVSFNIIIDG 560
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D+F Y+ L+ C + ++M + PN+VTY+ L++ +C + +EA
Sbjct: 230 LEGDVFVYSALISGFCSKGDIERGKELFNEMLRK-NVTPNVVTYSCLMNALCKKQKWKEA 288
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+++ ++ +PD Y + G
Sbjct: 289 AQMLDTMTGCKVRPDVVAYTVLADG 313
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ ++N ++ K + + + +M + P+ +T++ILI+ L EA
Sbjct: 549 PDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLV-PDNITFSILINRFLKLGQLDEAAS 607
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD ++++++KGY
Sbjct: 608 LYERMVSCGHVPDAVLFDSLLKGY 631
>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g02060, chloroplastic; Flags: Precursor
gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN ++ LC+ + +N + M + + + PN+V+YT L+ C + + EA+
Sbjct: 242 PDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAV 301
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP+ YNT++KG
Sbjct: 302 LVFHDMLSRGLKPNAVTYNTLIKG 325
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K ++ D+MR + G+ P+ T+ LI+ C + EA
Sbjct: 169 ISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEA 228
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R+ + PD YNTI+ G
Sbjct: 229 FRIFKDMELYHCNPDVVTYNTIIDG 253
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ + L P+ TYN L+K L + + + + A P+ T+ ILI C+
Sbjct: 307 MLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDA 366
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+L AM++ + + PD Y+ +++
Sbjct: 367 GHLDAAMKVFQEMLNMKLHPDSASYSVLIR 396
>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 408
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ PD+FTYN ++ C L + M+ ++ + T+ L+ C
Sbjct: 180 MVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLE-NVEADEYTFNTLVSAFCKEG 238
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+RE +V+ + G KPD YN++M GY
Sbjct: 239 NVREGKAVVAVMMKEGVKPDIITYNSLMDGY 269
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ PD Y+ L+ CK + VD+M G PN++TY ++ +C ++
Sbjct: 306 KEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMH-DRGQPPNIITYNSILYALCKIHHVE 364
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + L+ + G +PD + Y + G
Sbjct: 365 KTIALLRKIKVKGIQPDAYTYTILTNG 391
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCR--------SLTTVYNF---VDQMRASLG-------- 41
L FK + PD+FTYN L+ C + S T+ N V + RA+L
Sbjct: 89 LHFKGIKPDLFTYNVLINCFSQLGHTHFLDRVSYETLINGLCKVGETRAALRLLKEVNEK 148
Query: 42 -IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ ++V YT +I+ +C K + +A L + + PD F YN ++ G+
Sbjct: 149 IVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGF 199
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSL---TTVYNFVDQMRASLGIK--------------PNL 46
+ + PDI TYN L+ C + + ++N + Q + ++ P+
Sbjct: 253 EGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDT 312
Query: 47 VTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ Y+ LID C + + +A+ LV + D G P+ YN+I+
Sbjct: 313 IAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSIL 354
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP+I TYN ++ LCK + + +++ GI+P+ TYTIL + + L EA
Sbjct: 344 PPNIITYNSILYALCKIHHVEKTIALLRKIKVK-GIQPDAYTYTILTNGLFKDGRLEEAR 402
Query: 67 RLVSAL 72
+ L
Sbjct: 403 EIFPDL 408
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + D +T+N LV CK ++ V M G+KP+++TY L+D C K +
Sbjct: 217 LENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKE-GVKPDIITYNSLMDGYCLVKEV 275
Query: 63 REAMRLVSALSDSGFK------------------PDCFVYNTIMKGY 91
+A + + + G PD Y++++ G+
Sbjct: 276 DKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGF 322
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++T+N +V LCK L F+ M LG KPN+V+Y +I + N+ A R++
Sbjct: 227 VYTFNIMVNVLCKEGKLKKAREFIGFMEG-LGFKPNVVSYNTIIHGYSSRGNIEGARRIL 285
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
A+ G +PD + Y +++ G
Sbjct: 286 DAMRVKGIEPDSYTYGSLISG 306
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD +TY L+ +CK L D+M +G+ PN VTY LID CN +L
Sbjct: 291 KGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM-VEIGLVPNAVTYNTLIDGYCNKGDLE 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + G P YN ++
Sbjct: 350 RAFSYRDEMVKKGIMPSVSTYNLLVHA 376
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TYN L+ +C + ++ ++M S GI+P VTYT LI + ++
Sbjct: 396 KGIIPDAITYNILINGYSRCGNAKKAFDLHNEM-LSKGIEPTHVTYTSLIYVLSRRNRMK 454
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + D G PD ++N ++ G+
Sbjct: 455 EADDLFEKILDQGVSPDVIMFNAMVDGH 482
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PPD T+N L++ C+ + +D+M+ GIKP+ ++Y LI +++
Sbjct: 501 KSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRR-GIKPDHISYNTLISGYGRRGDIK 559
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A R+ + GF P YN ++K
Sbjct: 560 DAFRVRDEMLSIGFNPTLLTYNALIK 585
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN ++ ++ +D MR GI+P+ TY LI +C L EA
Sbjct: 260 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYGSLISGMCKEGRLEEASG 318
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ YNT++ GY
Sbjct: 319 LFDKMVEIGLVPNAVTYNTLIDGY 342
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ C L +++ D+M GI P++ TY +L+ + + EA
Sbjct: 328 LVPNAVTYNTLIDGYCNKGDLERAFSYRDEM-VKKGIMPSVSTYNLLVHALFMEGRMGEA 386
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G PD YN ++ GY
Sbjct: 387 DDMIKEMRKKGIIPDAITYNILINGY 412
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
+ + PD+ +N +V C ++ + + +M R S + P+ VT+ L+ C +
Sbjct: 466 QGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKS--VPPDEVTFNTLMQGRCREGKV 523
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ + G KPD YNT++ GY
Sbjct: 524 EEARMLLDEMKRRGIKPDHISYNTLISGY 552
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P + TYN LV L + + + +MR GI P+ +TY ILI+
Sbjct: 358 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK-GIIPDAITYNILINGYSRCG 416
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N ++A L + + G +P Y +++
Sbjct: 417 NAKKAFDLHNEMLSKGIEPTHVTYTSLI 444
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD +YN L+ + + + D+M S+G P L+TY LI +C +
Sbjct: 536 RGIKPDHISYNTLISGYGRRGDIKDAFRVRDEM-LSIGFNPTLLTYNALIKCLCKNQEGD 594
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + + G PD Y ++++G
Sbjct: 595 LAEELLKEMVNKGISPDDSTYLSLIEG 621
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I T N ++ K + + +M L I + T+ I+++ +C L+
Sbjct: 186 KGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM-FRLRISSTVYTFNIMVNVLCKEGKLK 244
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + + GFKP+ YNTI+ GY
Sbjct: 245 KAREFIGFMEGLGFKPNVVSYNTIIHGY 272
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
P + TYN L+KCLCK + + +M + GI P+ TY LI+ + N L E
Sbjct: 575 PTLLTYNALIKCLCKNQEGDLAEELLKEM-VNKGISPDDSTYLSLIEGMGNVDTLVE 630
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + ++ YN L+ CK +L+ +F D+M G+KP +V+YT LI CN
Sbjct: 427 MIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEM-IDKGLKPTVVSYTSLISGYCNKG 485
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA RL ++ G P+ + + T++
Sbjct: 486 KLHEAFRLYHEMTGKGIAPNTYTFTTLI 513
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ +T+ L+ L + +T + D+M + PN VTY ++I+ C N
Sbjct: 500 KGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQ-NMMPNEVTYNVMIEGHCKEGNTV 558
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L++ + G PD + Y ++
Sbjct: 559 KAFELLNQMVQKGLVPDTYTYRPLI 583
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+ K L + +YN LV+ CK + +D+M + I P+ +TY+ +I C N
Sbjct: 777 MLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDN-AIFPDCITYSTIIYQCCRRGN 835
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A+ + + G KPD YN ++ G
Sbjct: 836 LDGAIEFWDTMLNKGLKPDTLAYNFLIYG 864
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +F YN L+ LCK +M G+ N VTY+ILID+ C L A+
Sbjct: 364 PSLFVYNALINSLCKDGKFDEAELLFKEM-GEKGLCANDVTYSILIDSFCRRGKLDTAIH 422
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G K + YN+++ G+
Sbjct: 423 FLGKMIMAGIKITVYPYNSLINGH 446
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+ TYN +++ CK + + ++QM G+ P+ TY LI ++C+T
Sbjct: 532 MLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQM-VQKGLVPDTYTYRPLISSLCSTG 590
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + L FK + Y+ ++ GY
Sbjct: 591 RVCEAKKFIDDLHREHFKLNEMCYSALLHGY 621
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L + TY+ L+ C+ L T +F+ +M + GIK + Y LI+ C NL
Sbjct: 395 KGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMA-GIKITVYPYNSLINGHCKLGNLS 453
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ + D G KP Y +++ GY
Sbjct: 454 AAVSFFDEMIDKGLKPTVVSYTSLISGY 481
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L P + +Y L+ C L + +M GI PN T+T LI +
Sbjct: 462 MIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGK-GIAPNTYTFTTLISALFRAN 520
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A RL + + P+ YN +++G+
Sbjct: 521 RMTDAFRLFDEMLEQNMMPNEVTYNVMIEGH 551
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI+ Y +++ C+ ++ + +M +S N+V Y +LI +C K + EA+
Sbjct: 226 PDIYIYVAVIRSFCELKNFAKAKEMIQRMESS---DLNVVVYNVLIHGLCKNKRVWEAVE 282
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + L G Y T++ G
Sbjct: 283 IKNGLIQKGLTASEVTYCTLVLG 305
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVD-------------------------Q 35
++ K L PD +TY L+ LC + F+D +
Sbjct: 567 MVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGR 626
Query: 36 MRASLGI---------KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
+R +LG+ +LV Y +LID ++ L+ + D +PD +Y +
Sbjct: 627 LRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTS 686
Query: 87 IMKGY 91
++ GY
Sbjct: 687 MIDGY 691
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 1 LIFK-----QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
LIF+ +L P + T ++ L K R + V ++ S+GI+P++ Y +I +
Sbjct: 179 LIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEI-LSMGIRPDIYIYVAVIRS 237
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C KN +A ++ + S + VYN ++ G
Sbjct: 238 FCELKNFAKAKEMIQRMESSDL--NVVVYNVLIHG 270
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY+ ++ C+ +L F D M + G+KP+ + Y LI C L +A
Sbjct: 818 PDCITYSTIIYQCCRRGNLDGAIEFWDTM-LNKGLKPDTLAYNFLIYGCCIAGELGKAFE 876
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G KP+ + ++ G
Sbjct: 877 LRDDMIRRGVKPNQATHKSLSHG 899
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI K L TY LV LCK + +D+M LG P + L++ +
Sbjct: 287 LIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEM-IELGFVPTEAALSSLVEGLRRKG 345
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +A LV+ + G P FVYN ++
Sbjct: 346 KVVDAFDLVNRVKKVGAMPSLFVYNALI 373
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PD Y ++ K S+ + D M G PN+VTYT LI+ +C +
Sbjct: 675 QRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIM-IDEGCTPNIVTYTTLINELCKAGLMD 733
Query: 64 EAMRLVSALSDSGFKPDCFVY 84
+A L + S P+ Y
Sbjct: 734 KAELLWKEMLVSNSTPNHVTY 754
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P ++ T N L+ C C+C L+ +F+ +M LG +P++VT+ L++ C + +A
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKM-IKLGHEPSIVTFGSLLNGFCRGDRVYDA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + G+KP+ +YNTI+ G
Sbjct: 171 LYMFDQMVGMGYKPNVVIYNTIIDG 195
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P I T+ L+ C+ + DQM +G KPN+V Y +ID +C +K + A+
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQM-VGMGYKPNVVIYNTIIDGLCKSKQVDNAL 206
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G PD YN+++ G
Sbjct: 207 DLLNRMEKDGIGPDVVTYNSLISG 230
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ LCK + + + +++M GI P++VTY LI +C++ +A R
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD-GIGPDVVTYNSLISGLCSSGRWSDATR 242
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+VS ++ PD F +N ++
Sbjct: 243 MVSCMTKREIYPDVFTFNALI 263
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI TY+ L+ LC L M S G P++VTY+ILI+ C +K
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM-VSKGCFPDVVTYSILINGYCKSK 340
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ M+L +S G + Y +++GY
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTILIQGY 371
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
+++ PD+FT+N L+ K ++ F ++M R SL P++VTY++LI +C L
Sbjct: 250 REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL--DPDIVTYSLLIYGLCMYSRL 307
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + G PD Y+ ++ GY
Sbjct: 308 DEAEEMFGFMVSKGCFPDVVTYSILINGY 336
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F + P+I TYN L+ LC + + M+ + G+ ++VTY I+I +C
Sbjct: 387 MVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKN-GMDADIVTYNIIIRGMCKAG 445
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A + +L+ G PD + Y T+M G
Sbjct: 446 EVADAWDIYCSLNCQGLMPDIWTYTTMMLG 475
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L++ C+ L +M G+ PN++TY +L+ +C+ + +A+ +++
Sbjct: 363 TYTILIQGYCRAGKLNVAEEIFRRM-VFCGVHPNIITYNVLLHGLCDNGKIEKALVILAD 421
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ +G D YN I++G
Sbjct: 422 MQKNGMDADIVTYNIIIRG 440
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY+ L+ CK + + +M + G+ N VTYTILI C
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM-SQRGVVRNTVTYTILIQGYCRAG 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A + + G P+ YN ++ G
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHG 405
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ DI TYN +++ +CK + ++ + G+ P++ TYT ++ + REA
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQ-GLMPDIWTYTTMMLGLYKKGLRREA 485
Query: 66 MRLVSALSDSGFKP-DCFV 83
L + + G P +C+V
Sbjct: 486 DALFRKMKEDGILPNECYV 504
>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 506
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +Y +++C C+ VY + +M A+ G PN +TYT ++ ++ K EA+R
Sbjct: 255 PCVISYTTIIRCYCQQSEFVKVYEMLSEMEAN-GSPPNSITYTTIMSSLNAQKEFEEALR 313
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + SG +PD YN ++
Sbjct: 314 VATRMKRSGCQPDSLFYNCLI 334
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P+ T+N + CK + + +M+ G +P +++YT +I C +
Sbjct: 217 HITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGH-GFRPCVISYTTIIRCYCQQSEFVK 275
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++S + +G P+ Y TIM
Sbjct: 276 VYEMLSEMEANGSPPNSITYTTIM 299
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N L+ LCK + + + ++++ I PN T+ I I C + EA+ +
Sbjct: 190 SMNLLLDTLCKEKRVEQARVVLLELKSH--ITPNAHTFNIFIHGWCKANRVEEALWTIQE 247
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF+P Y TI++ Y
Sbjct: 248 MKGHGFRPCVISYTTIIRCY 267
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + PD++T+N L+ L K + + ++M+ + PN+VTYT LID +C +L
Sbjct: 296 LKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHK-NMFPNIVTYTSLIDGLCKNHHL 354
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
A+ L + + G +PD + Y ++
Sbjct: 355 ERAIALCKKMKEQGIQPDVYSYTILL 380
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ CLCK + + + +M GI PN+ TY LI C NL+EA
Sbjct: 231 PDVVMYTTIIHCLCKNKRVGDACDLYSEMIVK-GISPNVFTYNTLIYGFCIMGNLKEAFS 289
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + PD + +N ++
Sbjct: 290 LLNEMKLKNINPDVYTFNILI 310
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T N L+K LC C + F D++ A G + + V+Y LI+ +C + R
Sbjct: 161 PDAITLNTLIKGLCFCGEIKRALYFHDKVVAQ-GFQLDQVSYGTLINGLCKAGETKAVAR 219
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ L KPD +Y TI+
Sbjct: 220 LLRKLEGHSVKPDVVMYTTII 240
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+I TY L+ LCK L +M+ GI+P++ +YTIL+D +C L
Sbjct: 332 KNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQ-GIQPDVYSYTILLDALCKGGRLE 390
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + L G+ + YN ++ G
Sbjct: 391 NAKQFFQHLLVKGYHLNVRTYNVMING 417
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +Y L+ LCK V + ++ +KP++V YT +I +C K + +A L
Sbjct: 197 DQVSYGTLINGLCKAGETKAVARLLRKLEGH-SVKPDVVMYTTIIHCLCKNKRVGDACDL 255
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + G P+ F YNT++ G+
Sbjct: 256 YSEMIVKGISPNVFTYNTLIYGF 278
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP F ++ ++ L K + TV + Q +++ G+ PNL T ILI+ C+ ++ A
Sbjct: 90 PPPTFHFDNILSSLVKNKHYLTVISLFKQFQSN-GVTPNLCTLNILINCFCHLAHITFAF 148
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + + G+ PD NT++KG
Sbjct: 149 SVFANILKRGYHPDAITLNTLIKG 172
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+++Y L+ LCK L F + G N+ TY ++I+ +C
Sbjct: 367 QGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVK-GYHLNVRTYNVMINGLCKAGLFG 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+ M L S + G PD + TI+
Sbjct: 426 DVMDLKSKMEGKGCMPDAITFKTII 450
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 2 IFKQ-----LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDN 55
+FKQ + P++ T N L+ C C +T ++ F + ++ G P+ +T LI
Sbjct: 115 LFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKR--GYHPDAITLNTLIKG 172
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C ++ A+ + GF+ D Y T++ G
Sbjct: 173 LCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLING 207
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella
moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella
moellendorffii]
Length = 628
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TY L+ LCK L + +M A G PN+VTYT LID +C + +A++ V
Sbjct: 10 VVTYTTLIDGLCKSGDLDAAQALLQKM-ADAGCAPNVVTYTALIDGLCKARRPHDAIQTV 68
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ SG +PD YN+++ G
Sbjct: 69 KRMLRSGCEPDLVTYNSLIHG 89
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ K SL + +M+A +G KPN+VTY LI+ EA
Sbjct: 399 PDVVTYNTLIDGQSKFGSLKQAKLLLQEMQA-VGCKPNVVTYAALINGYAKHGMYEEAES 457
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +S G PD YNT++ +
Sbjct: 458 LFDEMSAKGCFPDIITYNTVLSAF 481
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T+N + LC+ N + M S G PNL++Y +ID +C + N+ +A +L
Sbjct: 293 EVYTHNAFIGALCRSGKFPLAKNILLGMIES-GSLPNLLSYNFVIDGLCKSGNVDDAWKL 351
Query: 69 VSALSDSG-FKPDCFVYNTIMKGY 91
+ DSG KPD +NT++ G+
Sbjct: 352 SRKMLDSGCCKPDVIFFNTLISGF 375
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +N L+ CK L+ + + +M+A P++VTY LID +L++A
Sbjct: 363 PDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKL 422
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G KP+ Y ++ GY
Sbjct: 423 LLQEMQAVGCKPNVVTYAALINGY 446
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TY L+ LCK R V +M S G +P+LVTY LI +C + +A
Sbjct: 42 APNVVTYTALIDGLCKARRPHDAIQTVKRMLRS-GCEPDLVTYNSLIHGLCMANRMDDAG 100
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
++ L +GF P+ Y+T++
Sbjct: 101 LVLQELVRNGFAPNHITYSTLV 122
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN + LCK L +++M GI P++VT+ +I +C + +A +
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG-GIPPDVVTFCSIISGLCKANRIDDAFQ 243
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + G PD Y+ ++
Sbjct: 244 VFKGMLERGCVPDSLTYSIML 264
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI-KPNLVTYTILIDNVCNTKNLREAM 66
PDI TYN ++ K ++ Q++ P+ +TY ILID C ++ + +
Sbjct: 469 PDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGL 528
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ ++ G+ D + YN ++
Sbjct: 529 TLLQEMTARGWSCDSYTYNVLI 550
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YNF++ LCK ++ + +M S KP+++ + LI C L +A +
Sbjct: 327 PNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQ 386
Query: 68 LVSALSDSGF-KPDCFVYNTIMKG 90
L+ + PD YNT++ G
Sbjct: 387 LLIEMKAKNICVPDVVTYNTLIDG 410
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ G ++VTYT LID +C + +L A L+ ++D+G P+ Y ++ G
Sbjct: 2 AANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDG 54
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 19 CLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFK 78
C +C+S D+M S G P++VTY I +C L + + ++ + G
Sbjct: 161 CEARCQSSRYECRDGDEMIES-GRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIP 219
Query: 79 PDCFVYNTIMKG 90
PD + +I+ G
Sbjct: 220 PDVVTFCSIISG 231
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-SLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD TY+ ++ L + L TV ++ M+A G + T+ I +C + A
Sbjct: 255 PDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAK 314
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
++ + +SG P+ YN ++ G
Sbjct: 315 NILLGMIESGSLPNLLSYNFVIDG 338
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN L+ LC + V Q G PN +TY+ L+ C + L +A
Sbjct: 77 EPDLVTYNSLIHGLCMANRMDDA-GLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQAR 135
Query: 67 RLVSAL 72
L+ +
Sbjct: 136 GLIREM 141
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+PPD+ T+ ++ LCK + + M G P+ +TY+I++DN+ L
Sbjct: 218 IPPDVVTFCSIISGLCKANRIDDAFQVFKGM-LERGCVPDSLTYSIMLDNLSRANRL 273
>gi|255660988|gb|ACU25663.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 376
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK YN V ++ G+ P ++TY++L +C + +A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLDK-GLNPGVITYSMLXKGLCLDHKVEKALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++ GFKPD ++N ++ G
Sbjct: 256 LWNQVTSKGFKPDVQMHNILIHG 278
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL A+ +
Sbjct: 93 DSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVV-DAFAYSAMINGLCKEANLDRAVCV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNGMIKSGCKPNAHVYNTLING 173
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 4 KQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K PD+ +N L+ LC K + ++Y +++ + + PNLV++ L++
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQHALSLYFDMNRWKCA----PNLVSHNTLMEGFYKDG 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++R A+ + + + +G +PD YN +KG
Sbjct: 319 DIRNALVIWARILRNGLEPDIISYNITLKG 348
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ +N +K CK L + + V +M+ S PNL+TY+ L+D +C + L+EA
Sbjct: 186 LKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEA 245
Query: 66 MRLVSAL-SDSGFKPDCFVYNTIMKGY 91
+ L + S PD YN ++ G+
Sbjct: 246 IELFEEMVSKDQILPDALTYNVLINGF 272
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F Y+ L+ CK L + ++M+ G+K + V YTILI+ C + EAM
Sbjct: 295 PNVFNYSALMSGFCKEGRLEEAMDAFEEMKI-FGLKQDTVGYTILINYFCRFGRIDEAMA 353
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + ++ K D N +++G+
Sbjct: 354 LLEEMKETKCKADIVTVNVLLRGF 377
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC+ L ++M + I P+ +TY +LI+ + A +
Sbjct: 224 PNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKK 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G P+ F Y+ +M G+
Sbjct: 284 IMEFMKSNGCSPNVFNYSALMSGF 307
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 5 QLPPDIFTYNFLVK---CLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
Q+ PD TYN L+ C K + F+ S G PN+ Y+ L+ C
Sbjct: 257 QILPDALTYNVLINGFSCWGKVDRAKKIMEFMK----SNGCSPNVFNYSALMSGFCKEGR 312
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EAM + G K D Y TI+ Y
Sbjct: 313 LEEAMDAFEEMKIFGLKQDTVGY-TILINY 341
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PDI T+ L+ C + + V+QM +GIKP++V YT +ID++C ++ A
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQM-VEMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + + G +PD +Y +++ G
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNG 221
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++T N L+ C C+ +F+ +M LG +P++VT+T LI+ C + EAM +
Sbjct: 106 DLYTCNLLMNCFCQSSQPYLASSFLGKM-MKLGFEPDIVTFTSLINGFCLGNRMEEAMSM 164
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V+ + + G KPD +Y TI+
Sbjct: 165 VNQMVEMGIKPDVVMYTTII 184
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ Y ++ LCK + + DQM + GI+P++V YT L++ +CN+ R+A
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQME-NYGIRPDVVMYTSLVNGLCNSGRWRDA 231
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ KPD +N ++ +
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAF 257
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR------ASLGIKPNLVTYTILID 54
+I + P+IFTY L+ C + VD+ R + G P++V YT LI+
Sbjct: 273 MIRMSIAPNIFTYTSLINGFC-------MEGCVDEARQMFYLMETKGCFPDVVAYTSLIN 325
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C K + +AM++ +S G + Y T+++G+
Sbjct: 326 GFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGF 362
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ T+N L+ K ++M + I PN+ TYT LI+ C +
Sbjct: 241 RKIKPDVITFNALIDAFVKEGKFLDAEELYNEM-IRMSIAPNIFTYTSLINGFCMEGCVD 299
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G PD Y +++ G+
Sbjct: 300 EARQMFYLMETKGCFPDVVAYTSLINGF 327
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ + +PP+I TYN L+ CLC K + ++ + Q R G+ PN+ TY +L+ +C
Sbjct: 378 MVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM-QKREMDGVAPNIWTYNVLLHGLC 436
Query: 58 NTKNLREAM 66
L +A+
Sbjct: 437 YNGKLEKAL 445
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y L+ CKC+ + +M + G+ N +TYT LI A
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEM-SQKGLTGNTITYTTLIQGFGQVGKPNVAQE 373
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ S + G P+ YN ++
Sbjct: 374 VFSHMVSRGVPPNIRTYNVLLH 395
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y LV LC + + M IKP+++T+ LID +A
Sbjct: 210 PDVVMYTSLVNGLCNSGRWRDADSLLRGM-TKRKIKPDVITFNALIDAFVKEGKFLDAEE 268
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + P+ F Y +++ G+
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGF 292
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I + L+ + K + V N D ++ +G+ +L T +L++ C + A
Sbjct: 70 PSIIDFTKLLNVIAKMKKFDVVINLCDHLQI-MGVSHDLYTCNLLMNCFCQSSQPYLASS 128
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + GF+PD + +++ G+
Sbjct: 129 FLGKMMKLGFEPDIVTFTSLINGF 152
>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
Length = 548
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I + ++ LCK + + VD + + G +PNL+T+ L+D C N++EA+
Sbjct: 225 PPCIKFFTSIINNLCKEGRVAEGKDIVDLIIHT-GQRPNLITFNSLVDGYCLVGNMKEAV 283
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ G +PD + YNT++ GY
Sbjct: 284 GLLDSMESVGVEPDIYTYNTLVDGY 308
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T+N +++ + K + + ++ G+ P ++TY ++I N+ ++ +A L
Sbjct: 402 DILTFNIVIRAMFKVGRMQEAKELFAAI-STYGLVPTILTYRVMITNLIKEESFEDADNL 460
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
S++ SG PD + N I++
Sbjct: 461 FSSMEKSGCTPDSCILNEIIR 481
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N LV C ++ +D M S+G++P++ TY L+D C + +A+
Sbjct: 261 PNLITFNSLVDGYCLVGNMKEAVGLLDSME-SVGVEPDIYTYNTLVDGYCKHGRIDDALT 319
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + YN I+ G
Sbjct: 320 LFRDMLHKRVTLTSVSYNIILHG 342
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTY-TILIDNVCNTKNLRE 64
+P D Y L++ C L + M S GI P + + T +I+N+C + E
Sbjct: 188 VPLDTAVYGCLIQGQCNRGDLVKAKELISDM-LSKGIPPPCIKFFTSIINNLCKEGRVAE 246
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
+V + +G +P+ +N+++ GY
Sbjct: 247 GKDIVDLIIHTGQRPNLITFNSLVDGY 273
>gi|14488297|gb|AAK63878.1|AC074105_7 Putative salt-inducible protein [Oryza sativa]
gi|222612440|gb|EEE50572.1| hypothetical protein OsJ_30721 [Oryza sativa Japonica Group]
Length = 854
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDIFT N L+ C+ L T N M S+G+ P++VTY +++ C +K++ A
Sbjct: 607 LVPDIFTRNILIDGFCREGGLNTANNLFFGMY-SIGLTPDVVTYNTMLNAYCRSKDINGA 665
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ + G +PD F YN M
Sbjct: 666 MIFMNKMLADGCEPDIFTYNIWM 688
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+ FTYN L+ C+ +++ +MR S G+ P++ T ILID C
Sbjct: 567 MIRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQS-GLVPDIFTRNILIDGFCREG 625
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L A L + G PD YNT++ Y
Sbjct: 626 GLNTANNLFFGMYSIGLTPDVVTYNTMLNAY 656
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN ++ C+ + + F+++M A G +P++ TY I + ++C+ L A
Sbjct: 642 LTPDVVTYNTMLNAYCRSKDINGAMIFMNKMLAD-GCEPDIFTYNIWMHSLCSNHLLNRA 700
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M L+ L+ + P+ YNT+M G
Sbjct: 701 MMLLDELAATDCAPNSVTYNTLMDG 725
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD ++ V LC+ L YN F++ +R G+ PN TY LI C N+ E
Sbjct: 537 LQPDFVAFSAYVNGLCRLDFLDEAYNGFIEMIRR--GLVPNNFTYNSLISAFCRAGNVSE 594
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A++L + SG PD F N ++ G+
Sbjct: 595 ALKLEQKMRQSGLVPDIFTRNILIDGF 621
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN L+K C +N D+MR + G P +VTY IL++ +C + EA
Sbjct: 259 PDACSYNILMKGHCLYGQAEDAFNLFDEMRVT-GCCPTIVTYNILMNELCREGRMVEARM 317
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + +G + + +N ++ GY
Sbjct: 318 LFDEMLQAGVEVNTITFNVLIDGY 341
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDIFTYN + LC L +D++ A+ PN VTY L+D +C + L AM
Sbjct: 679 PDIFTYNIWMHSLCSNHLLNRAMMLLDELAAT-DCAPNSVTYNTLMDGIC-SDVLDRAMI 736
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L F+P+ N + +
Sbjct: 737 LTGRLIKLAFQPNTVTINILFSHF 760
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LC+ + D+M + G++ N +T+ +LID + A
Sbjct: 294 PTIVTYNILMNELCREGRMVEARMLFDEMLQA-GVEVNTITFNVLIDGYAKAGQMENANM 352
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G PDC +N + G
Sbjct: 353 ACAEMKAMGLMPDCCTFNILSAG 375
>gi|3695380|gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]
Length = 508
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
PDI TYN L+ LC K + V+ D+++ S G +P+ TY ILI C + + +
Sbjct: 287 PDICTYNSLIHVLCLFGKAKDALIVW---DELKVS-GHEPDNSTYRILIQGCCKSYRMDD 342
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
AMR+ + +GF PD VYN ++ G
Sbjct: 343 AMRIYGEMQYNGFVPDTIVYNCLLDG 368
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L++ CK + +M+ + G P+ + Y L+D + + EA +
Sbjct: 322 PDNSTYRILIQGCCKSYRMDDAMRIYGEMQYN-GFVPDTIVYNCLLDGTLKARKVTEACQ 380
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G + C+ YN ++ G
Sbjct: 381 LFEKMVQEGVRASCWTYNILIDG 403
>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TYN +V C+ + + + +M+ I+P +VTYT LI + +
Sbjct: 179 REIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGR-NIEPTVVTYTTLIKGYVSVDRVD 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+R V + G KP+ Y+T++ G
Sbjct: 238 DALRFVEEMKGFGMKPNAITYSTLLPG 264
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + TY L+K + FV++M+ G+KPN +TY+ L+ +CN + +
Sbjct: 214 RNIEPTVVTYTTLIKGYVSVDRVDDALRFVEEMKG-FGMKPNAITYSTLLPGLCNAEKMS 272
Query: 64 EAMRLVSALSDSGFKP 79
EA ++ + D P
Sbjct: 273 EARSILKEMVDKYIAP 288
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P T+N ++ + T F + M+ S I P++VTY +++ C K
Sbjct: 141 MLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMK-SREIMPDVVTYNTMVNGYCRVK 199
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + +P Y T++KGY
Sbjct: 200 KMEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + YN ++ LCK + + N +M GI+PN+VTY+ LI +CN +
Sbjct: 46 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSD 104
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + PD F ++ ++ +
Sbjct: 105 ASRLLSDMIERKINPDVFTFSALIDAF 131
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PP+I TYN L+ LCK L + ++ S ++P + TY I+I+ +
Sbjct: 248 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGM 306
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L LS G KPD YNT++ G+
Sbjct: 307 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 341
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ PD+FT++ L+ K L D+M I P++VTY+ LI+ C
Sbjct: 112 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-VKRSIDPSIVTYSSLINGFCMHD 170
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA ++ + PD YNT++KG+
Sbjct: 171 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 201
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY +V LCK +N +++M ++P ++ Y +ID +C K
Sbjct: 7 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYK 65
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +A+ L + G +P+ Y++++
Sbjct: 66 HMDDALNLFKEMETKGIRPNVVTYSSLI 93
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P I+TYN +++ +CK + ++ + G+KP++V Y +I C + E
Sbjct: 291 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEE 349
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMK 89
A L + + G P+ YNT+++
Sbjct: 350 ADALFKEMKEDGTLPNSGCYNTLIR 374
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ L + +M S G+ PN++TY L+D +C L
Sbjct: 220 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-VSDGVPPNIMTYNTLLDGLCKNGKLE 278
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM + L S +P + YN +++G
Sbjct: 279 KAMVVFEYLQRSKMEPTIYTYNIMIEG 305
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY+ L+ CLC + + M I P++ T++ LID L
Sbjct: 80 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLV 138
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + P Y++++ G+
Sbjct: 139 EAEKLYDEMVKRSIDPSIVTYSSLINGF 166
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+D+M A G +P+LVTY ++++ +C + A L++ + +P +YNTI+ G
Sbjct: 3 LIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++T+N +V LCK L F+ M LG KPN+V+Y +I + N+ A R++
Sbjct: 249 VYTFNIMVNVLCKEGKLKKAREFIGFMEG-LGFKPNVVSYNTIIHGYSSRGNIEGARRIL 307
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
A+ G +PD + Y +++ G
Sbjct: 308 DAMRVKGIEPDSYTYGSLISG 328
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD +TY L+ +CK L D+M +G+ PN VTY LID CN +L
Sbjct: 313 KGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM-VEIGLVPNAVTYNTLIDGYCNKGDLE 371
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + G P YN ++
Sbjct: 372 RAFSYRDEMVKKGIMPSVSTYNLLVHA 398
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD TYN L+ +C + ++ ++M S GI+P VTYT LI + ++
Sbjct: 418 KGIIPDAITYNILINGYSRCGNAKKAFDLHNEM-LSKGIEPTHVTYTSLIYVLSRRNRMK 476
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + D G PD ++N ++ G+
Sbjct: 477 EADDLFEKILDQGVSPDVIMFNAMVDGH 504
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K +PPD T+N L++ C+ + +D+M+ GIKP+ ++Y LI +++
Sbjct: 523 KSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRR-GIKPDHISYNTLISGYGRRGDIK 581
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A R+ + GF P YN ++K
Sbjct: 582 DAFRVRDEMLSIGFNPTLLTYNALIK 607
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN ++ ++ +D MR GI+P+ TY LI +C L EA
Sbjct: 282 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYGSLISGMCKEGRLEEASG 340
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ YNT++ GY
Sbjct: 341 LFDKMVEIGLVPNAVTYNTLIDGY 364
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ C L +++ D+M GI P++ TY +L+ + + EA
Sbjct: 350 LVPNAVTYNTLIDGYCNKGDLERAFSYRDEM-VKKGIMPSVSTYNLLVHALFMEGRMGEA 408
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G PD YN ++ GY
Sbjct: 409 DDMIKEMRKKGIIPDAITYNILINGY 434
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
+ + PD+ +N +V C ++ + + +M R S + P+ VT+ L+ C +
Sbjct: 488 QGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKS--VPPDEVTFNTLMQGRCREGKV 545
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ + G KPD YNT++ GY
Sbjct: 546 EEARMLLDEMKRRGIKPDHISYNTLISGY 574
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P + TYN LV L + + + +MR GI P+ +TY ILI+
Sbjct: 380 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK-GIIPDAITYNILINGYSRCG 438
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N ++A L + + G +P Y +++
Sbjct: 439 NAKKAFDLHNEMLSKGIEPTHVTYTSLI 466
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD +YN L+ + + + D+M S+G P L+TY LI +C +
Sbjct: 558 RGIKPDHISYNTLISGYGRRGDIKDAFRVRDEM-LSIGFNPTLLTYNALIKCLCKNQEGD 616
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + + G PD Y ++++G
Sbjct: 617 LAEELLKEMVNKGISPDDSTYLSLIEG 643
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I T N ++ K + + +M L I + T+ I+++ +C L+
Sbjct: 208 KGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM-FRLRISSTVYTFNIMVNVLCKEGKLK 266
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + + GFKP+ YNTI+ GY
Sbjct: 267 KAREFIGFMEGLGFKPNVVSYNTIIHGY 294
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
P + TYN L+KCLCK + + +M + GI P+ TY LI+ + N L E
Sbjct: 597 PTLLTYNALIKCLCKNQEGDLAEELLKEM-VNKGISPDDSTYLSLIEGMGNVDTLVE 652
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK S+ + ++MR LG+ PN+ YT L+D +C L EA++
Sbjct: 501 PNVITYCALIDGLCKAGSIDEAISHFNKMR-DLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G D VY ++ GY
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGY 583
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+ C CK + T Y + M+ G+ N+VT++ +D C +REAM+L
Sbjct: 257 DVVTYNALINCFCKFGRMETAYGYFAAMKRE-GVMANVVTFSTFVDAFCKEGLVREAMKL 315
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G + F Y ++ G
Sbjct: 316 FAQMRVRGMALNEFTYTCLIDG 337
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F+QLP P++FT+N ++ LCK L + +M+ +G P++VT+ LID
Sbjct: 179 LFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMK-EMGCLPDVVTFNSLIDGYGKCG 237
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L E +LV + SG K D YN ++ +
Sbjct: 238 ELDEVEQLVEEMRRSGCKADVVTYNALINCF 268
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L DI Y L++ LC L + + +M S G++PN + YT ++D + +
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES-GLEPNYIIYTTMMDACFKSGKVP 485
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++ + DSGF+P+ Y ++ G
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDG 512
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP+ T N ++ L + RS V +Q+ A PN+ T+ I+ID +C L E
Sbjct: 152 RVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA-----PNVFTFNIVIDFLCKEGELAE 206
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L S + + G PD +N+++ GY
Sbjct: 207 ARSLFSRMKEMGCLPDVVTFNSLIDGY 233
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FTY L+ CK L +D+M G+ N+VTYT+L+D +C + + EA ++
Sbjct: 329 FTYTCLIDGTCKAGRLDDAIVLLDEM-VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ +G + + +Y T++ G+
Sbjct: 388 MMEKAGVRANELLYTTLIHGH 408
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y LV LCK L ++M G+ + V YT L+D NL +A
Sbjct: 534 LDPNVQAYTALVDGLCKNGCLNEAVQLFNEM-VHKGMSLDKVVYTALLDGYLKQGNLHDA 592
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + DSG + D F Y + G+
Sbjct: 593 FALKAKMIDSGLQLDLFCYTCFISGF 618
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +P ++ TY LV LCK R + + + M + G++ N + YT LI K
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKA-GVRANELLYTTLIHGHFMNK 412
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N +A+ L+S + + G + D +Y +++G
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQG 442
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G +PN++TY LID +C ++ EA+ + + D G P+ Y ++ G
Sbjct: 498 GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDG 547
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + D Y L+ K +L + +M S G++ +L YT I CN
Sbjct: 564 MVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDS-GLQLDLFCYTCFISGFCNLN 622
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + S + G PD VYN ++ Y
Sbjct: 623 MMPEAREVFSEMIGHGIAPDRAVYNCLISKY 653
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ Y+ L+ LCK R + + QM+ + P+ +TY ILID +C + ++
Sbjct: 203 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNILIDGLCKSGDVA 261
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + ++G KPD + YN ++ G+
Sbjct: 262 AARAFFDEMLEAGCKPDVYTYNILISGF 289
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L+ CK + D M +S PN+VTY LI +C + L +A
Sbjct: 277 PDVYTYNILISGFCKAGNTDAACGVFDDMSSSR-CSPNVVTYGTLISGLCKRRQLTKASL 335
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G PD FVY++++ G
Sbjct: 336 YYQHMKERGCPPDSFVYSSLVDG 358
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LCK + F D+M + G KP++ TY ILI C N A
Sbjct: 242 PDTITYNILIDGLCKSGDVAAARAFFDEMLEA-GCKPDVYTYNILISGFCKAGNTDAACG 300
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +S S P+ Y T++ G
Sbjct: 301 VFDDMSSSRCSPNVVTYGTLISG 323
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TY +V L K + + ++++ A+ G P + TY L++ +C L EA+ L
Sbjct: 33 DIHTYTTIVDWLAKNKKIQEAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDL 91
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + D+G PD Y +++ G
Sbjct: 92 LRKIVDNGCTPDVVTYTSLIDG 113
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + ++ LCK + M A G+ PN V Y+ LI +C + + A+
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALE 230
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + + PD YN ++ G
Sbjct: 231 MLAQMKKAFCTPDTITYNILIDG 253
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK L + + ++ G P++VTYT LID + K EA +
Sbjct: 67 PTIATYNALLNGLCKMGRLEEAIDLLRKI-VDNGCTPDVVTYTSLIDGLGKKKRSFEAYK 125
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ G D Y +++G
Sbjct: 126 LFKEMASRGLALDTVCYTALIRG 148
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD F Y+ LV LCK L D+M S G+ N T T LI ++C + EA+
Sbjct: 346 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERS-GV-ANSQTRTRLIFHLCKANRVDEAV 403
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L +A+ G P + YN+I+
Sbjct: 404 SLFNAIRKEGM-PHPYAYNSII 424
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L D Y L++ L + + + M S G P++VT + +ID +C +
Sbjct: 133 RGLALDTVCYTALIRGLLQAGKIPQASSVYKTM-TSQGCVPDVVTLSTMIDGLCKAGRIG 191
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R+ ++ G P+ VY+ ++ G
Sbjct: 192 AAVRIFKSMEARGLAPNEVVYSALIHG 218
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ L K + Y +M AS G+ + V YT LI + + +A
Sbjct: 102 PDVVTYTSLIDGLGKKKRSFEAYKLFKEM-ASRGLALDTVCYTALIRGLLQAGKIPQASS 160
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ G PD +T++ G
Sbjct: 161 VYKTMTSQGCVPDVVTLSTMIDG 183
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T++ L+ L K L ++ Q + G ++ TYT ++D + K ++EA+ L+
Sbjct: 1 TFSILINGLVKAGMLIQAHSLA-QETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEK 59
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +G P YN ++ G
Sbjct: 60 ITANGCTPTIATYNALLNG 78
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TYN L+ KC ++Q+++S +KP++V+Y +I+ C ++EA
Sbjct: 625 LSPDLITYNSLMDMYAKCSESWEAEKILNQLKSS-QVKPDVVSYNTVINGFCKQGLIKEA 683
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++S + G P Y+T++ GY
Sbjct: 684 QRILSEMIADGMAPCVVTYHTLVGGY 709
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +N ++ K + V D ++ S G+ P+L+TY L+D EA +
Sbjct: 592 PDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQS-GLSPDLITYNSLMDMYAKCSESWEAEK 650
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ L S KPD YNT++ G+
Sbjct: 651 ILNQLKSSQVKPDVVSYNTVINGF 674
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L++ K + T + +M G +P+ VTY L EA +
Sbjct: 277 PCVVTYNALLQVFGKAGNYTEALRVLKEMEQD-GCQPDAVTYNELAGTYARAGFYEEAAK 335
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ G P+ F YNT+M Y
Sbjct: 336 CLDTMTSKGLLPNAFTYNTVMTAY 359
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ +C S T + ++M S G P L TY L++ + + A +VS
Sbjct: 456 TYNTLIAAYGRCGSRTNAFKMYNEM-TSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSK 514
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GFKP+ Y+ +++ Y
Sbjct: 515 MRTKGFKPNDQSYSLLLQCY 534
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT + ++ C+ + F + ++A G P +VTY L+ N EA+R
Sbjct: 242 PDDFTASTVIAACCRDGLVDEAVAFFEDLKAR-GHTPCVVTYNALLQVFGKAGNYTEALR 300
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G +PD YN + Y
Sbjct: 301 VLKEMEQDGCQPDAVTYNELAGTY 324
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ PD+ +YN ++ CK + + +M A G+ P +VTY L+ + + E
Sbjct: 659 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIAD-GMAPCVVTYHTLVGGYASLEMFSE 717
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +++ + KP Y ++ Y
Sbjct: 718 AREVINYMIQHNLKPMELTYRRVVDSY 744
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ FTYN ++ + DQM+ S G PN+ TY ++ +
Sbjct: 343 KGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKS-GCVPNVNTYNFILGMLGKKSRFT 401
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+ ++ +S SG P+ +NT++
Sbjct: 402 VMLEMLGEMSRSGCTPNRVTWNTML 426
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L + +D M S G+ PN TY ++ N + EA+
Sbjct: 312 PDAVTYNELAGTYARAGFYEEAAKCLDTM-TSKGLLPNAFTYNTVMTAYGNIGKVDEALA 370
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + SG P+ YN I+
Sbjct: 371 LFDQMKKSGCVPNVNTYNFIL 391
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 22 KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81
KCR L + +++A G P+LV + ++ + + ++ SG PD
Sbjct: 571 KCRRLGGIEKAFQEVKAR-GYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDL 629
Query: 82 FVYNTIMKGY 91
YN++M Y
Sbjct: 630 ITYNSLMDMY 639
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ +V CL K L Y +M + G PNLVTY I+I +N
Sbjct: 464 LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDN-GCTPNLVTYNIIIALQAKARNYDNV 522
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + +GF+PD Y+ +M+
Sbjct: 523 VKLYRDMQIAGFRPDKITYSIVME 546
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY ++ L + + T+ +D+M +S+ KP +VTY +I LREA+++
Sbjct: 362 DGHTYTTMIGILGQAKQFGTMRKLLDEM-SSVNCKPTVVTYNRIIHAYGRANYLREAVKV 420
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ +G++PD Y T++
Sbjct: 421 FEEMEGAGYQPDRVTYCTLI 440
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN ++ + L ++M + G +P+ VTY LID + L AM
Sbjct: 396 PTVVTYNRIIHAYGRANYLREAVKVFEEMEGA-GYQPDRVTYCTLIDIHAKSGYLEVAMD 454
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + G PD F Y+ ++
Sbjct: 455 LYGRMQEVGLSPDTFTYSAMV 475
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ K L + +M+ +G+ P+ TY+ +++ + L A +
Sbjct: 431 PDRVTYCTLIDIHAKSGYLEVAMDLYGRMQ-EVGLSPDTFTYSAMVNCLGKGGQLAAAYK 489
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + D+G P+ YN I+
Sbjct: 490 LFCEMIDNGCTPNLVTYNIII 510
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY L+ C+ R L + D+M G PN VTY+ LI+ +CN + EAM
Sbjct: 230 PDAFTYTSLILGHCRNRKLDKAFEVFDRMVKD-GCNPNSVTYSTLINGLCNEGRIGEAMD 288
Query: 68 LVSALSDSGFKPDCFVY 84
++ +++ G +P + Y
Sbjct: 289 MLEEMTEKGIEPTVYTY 305
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ LC + + +++M GI+P + TYT+ I ++C+ + +A+
Sbjct: 265 PNSVTYSTLINGLCNEGRIGEAMDMLEEMTEK-GIEPTVYTYTVPISSLCDIGRVDDAIN 323
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV ++ G P Y I+ G
Sbjct: 324 LVRSMGKKGCSPSVQTYTAIISG 346
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ CK L + +F +M GI PN TYT +ID C + A+
Sbjct: 475 PDERTYCELISGFCKGGKLDSATSFFYEM-LKCGISPNQWTYTAMIDGYCKEGKIDVALS 533
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++G YN I+ G
Sbjct: 534 LFERMEENGCSASIETYNAIISG 556
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++++N L+ L K +T+ N Q+ +S G+KP+L+T+ +I+ +C ++EA+ +
Sbjct: 162 LYSFNTLLLQLGKFDMVTSAQNVYAQIFSS-GVKPSLLTFNTMINILCKKGKVQEAVLVF 220
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ + PD F Y +++ G+
Sbjct: 221 NKIFQFDLCPDAFTYTSLILGH 242
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I TYN ++ L K + F +M G++PN +TYT LI+ +C A ++
Sbjct: 547 IETYNAIISGLSKGNRFSEAEKFCAKMTEQ-GLQPNTITYTSLINGLCKNTATNLAFKIF 605
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ P+ Y +++ G
Sbjct: 606 HEMEKKNCLPNAHTYTSLIYG 626
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY ++ L + + +M G+ PN VTY LI+ +C
Sbjct: 331 KGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKE-GLVPNTVTYNALINELCTEGRFG 389
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+++ + G + YN I+KG
Sbjct: 390 IALKIFDWMEGHGTLANAQTYNQIIKG 416
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY L+ LCK + + +M PN TYT LI +C +
Sbjct: 576 QGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKK-NCLPNAHTYTSLIYGLCQEGKVD 634
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A R L+++G +P Y+T++ G
Sbjct: 635 AAER----LTENGCEPTIDTYSTLVSG 657
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P ++TY + LC + N V M G P++ TYT +I + +
Sbjct: 296 KGIEPTVYTYTVPISSLCDIGRVDDAINLVRSM-GKKGCSPSVQTYTAIISGLFRAGKME 354
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ + + G P+ YN ++
Sbjct: 355 LAIGMYHKMLKEGLVPNTVTYNALI 379
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLCK---CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
P + T+N ++ LCK + V+N + Q + P+ TYT LI C + L +
Sbjct: 195 PSLLTFNTMINILCKKGKVQEAVLVFNKIFQ----FDLCPDAFTYTSLILGHCRNRKLDK 250
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + G P+ Y+T++ G
Sbjct: 251 AFEVFDRMVKDGCNPNSVTYSTLING 276
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PD+ TYN L+ C L +DQ+ KP ++TYTILI+ +
Sbjct: 175 RGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKD-NCKPTVITYTILIEATITQGGID 233
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EAM+L+ + G +PD + YN ++ G
Sbjct: 234 EAMKLLDEMLSRGLRPDRYTYNVVVNG 260
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+F YN ++ CK + +D+M+ G +P++VTY ILI N C
Sbjct: 137 ILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKR-GFEPDVVTYNILIGNFCGRG 195
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A+R++ L KP Y +++
Sbjct: 196 RLDLALRVMDQLLKDNCKPTVITYTILIEA 225
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD ++Y+ L+ LC+ + F+D M S G P++++Y ++ ++C N
Sbjct: 350 KALAPDGYSYDPLISALCREGKVDLAIEFLDDM-ISGGHLPDILSYNSILASLCKNGNAD 408
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
EA+ + L + G P+ YNT+
Sbjct: 409 EALNIFEKLGEVGCPPNAGSYNTL 432
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 45/85 (52%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN L+ CLC+ + + M S +P +++Y ++ +C + + +A
Sbjct: 457 IDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDA 516
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ +++A+ + G P+ Y +++G
Sbjct: 517 IEVLAAMVNEGCLPNETTYTLLIQG 541
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN ++ LCK + N +++ +G PN +Y L + ++ + A+
Sbjct: 389 PDILSYNSILASLCKNGNADEALNIFEKL-GEVGCPPNAGSYNTLFGALWSSGDKIRALG 447
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + +G PD YN+++
Sbjct: 448 MILEMLSNGIDPDEITYNSLI 468
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD +TYN +V +CK L + F+ ++ + G + TY IL+ ++ N
Sbjct: 242 MLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKN-GCVAGVSTYNILLRDLLNEG 300
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L+S + G +P+ Y+T++
Sbjct: 301 KWEYGEKLMSDMLVKGCEPNPITYSTLI 328
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + +D+M S G++P+ TY ++++ +C L A
Sbjct: 214 PTVITYTILIEATITQGGIDEAMKLLDEM-LSRGLRPDRYTYNVVVNGMCKEGMLDRAFE 272
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+S +S +G YN +++
Sbjct: 273 FLSRISKNGCVAGVSTYNILLR 294
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 21 CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80
CK F+ M + G KP+++ T LI N K + +A++++ L G KPD
Sbjct: 88 CKSAKYDESLYFLQHM-VNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG-KPD 145
Query: 81 CFVYNTIMKGY 91
F YN ++ G+
Sbjct: 146 VFAYNAVISGF 156
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ TY+ L+ LC+ + N + M+ + P+ +Y LI +C
Sbjct: 312 MLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEK-ALAPDGYSYDPLISALCREG 370
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YN+I+
Sbjct: 371 KVDLAIEFLDDMISGGHLPDILSYNSIL 398
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + T+N +K LC+ + N +DQM + PN+ TY L+D + REA
Sbjct: 451 PPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECL-PNIRTYNELLDGLFRANAFREAC 509
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+ L + + DC YNTIM G+
Sbjct: 510 GLIRELEERKVEFDCVTYNTIMYGF 534
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D T N V CK + T +D + A + +++T+TI++ +CN EA+
Sbjct: 558 DTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVY 617
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ +N +++G+
Sbjct: 618 LHEMLKRGIFPNIATWNVLVRGF 640
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 29/114 (25%)
Query: 4 KQLPPDIFTYNFLVKCLCK-------CRSLTTVYNF---------------------VDQ 35
+ L P++FTYN L+K LC+ C+ L + N VD+
Sbjct: 173 EGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDK 232
Query: 36 MRA-SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
R ++ +P + Y LI VC +EA L++ + D G P+ Y+T++
Sbjct: 233 ARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVI 286
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G+ PN+V Y LI +C+ N+ EA+ + + + +P+ Y+TI+ G+
Sbjct: 344 GVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGF 394
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + YN ++ L + + M++ G++PN+ TY +L+ +C + A
Sbjct: 141 EPSVKIYNLVLDALLSQNLFKMINALYNNMKSE-GLEPNVFTYNVLLKALCQNGKVDGAC 199
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L+ +S+ G PD Y T++
Sbjct: 200 KLLVEMSNKGCDPDDVSYTTVI 221
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ YN L+ LC ++ + +QM I+PN+ TY+ +I +
Sbjct: 340 MIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKD-SIRPNVTTYSTIIYGFAKSG 398
Query: 61 NLREAMRLVSALSDSGFKPDCFVY 84
+L A + + + G +P+ VY
Sbjct: 399 DLVSACETWNKMINCGCRPNVVVY 422
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ ++ K L + ++M + G +PN+V YT ++D +C +A
Sbjct: 382 PNVTTYSTIIYGFAKSGDLVSACETWNKM-INCGCRPNVVVYTCMVDVLCQMSMFDQAFD 440
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P +N +KG
Sbjct: 441 LIDNMISDGCPPTVITFNNFIKG 463
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + YN L+ +CK ++ +++M G+ PN+++Y+ +I + + N+
Sbjct: 239 KFEPVVPVYNALIHGVCKECRFKEAFDLMNEM-VDRGVDPNVISYSTVISCLSDMGNVEL 297
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + G +P+ + +++KG+
Sbjct: 298 SLAVFGRMFVRGCRPNVQTFTSLIKGF 324
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y +V LC+ ++ +D M S G P ++T+ I +C + AM
Sbjct: 417 PNVVVYTCMVDVLCQMSMFDQAFDLIDNM-ISDGCPPTVITFNNFIKGLCRAGRVEWAMN 475
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + P+ YN ++ G
Sbjct: 476 VLDQMEKYECLPNIRTYNELLDG 498
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ +Y+ ++ CL ++ +M G +PN+ T+T LI
Sbjct: 270 MVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVR-GCRPNVQTFTSLIKGFFVRG 328
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L + + G P+ YNT++ G
Sbjct: 329 RVGDAVGLWNLMIREGVSPNVVAYNTLIHG 358
>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03560, mitochondrial; Flags: Precursor
gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 324 QVPPHAFS--LVIGGLCKEGKLNEGYTVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 380
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 381 AIRLLHRMIDEGFKPDVVTYSVVVNG 406
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R G+ N + Y+ LID +
Sbjct: 388 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFD-GLAINSMFYSSLIDGLGKAG 446
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 447 RVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P ++TYNFL+ L + + + M + IKP++VTY +I C ++A
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGR-IKPDIVTYNTMIKGYCKAGQTQKA 276
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + + G + D Y T+++
Sbjct: 277 MEKLRDMETRGHEADKITYMTMIQA 301
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + N L+K K + + +M+ + GI+P L TY L++ + + +
Sbjct: 182 EFPMTVSAANALIKSFGKLGMVEELLWVWRKMKEN-GIEPTLYTYNFLMNGLVSAMFVDS 240
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A R+ + KPD YNT++KGY
Sbjct: 241 AERVFEVMESGRIKPDIVTYNTMIKGY 267
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 353 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 411
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ G + Y++++ G
Sbjct: 412 RVEEALDYFHTCRFDGLAINSMFYSSLIDG 441
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 32/82 (39%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + YN L+ K R + +M G + TYTIL+ + EA++L
Sbjct: 466 DSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKL 525
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ D G P + + G
Sbjct: 526 WDMMIDKGITPTAACFRALSTG 547
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L PD YN + CLC + +F+ +MR + G++P+ TY +I C
Sbjct: 563 LMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNT-GLEPDQATYNTMIAARCREG 621
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A++L+ + + KP+ Y T++ G
Sbjct: 622 KTSKALKLLKEMKRNSIKPNLITYTTLVVG 651
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN LV V++M+A G++PN+VTYT LI C K + EA L
Sbjct: 221 DVVGYNSLVAGFFHSGDADAALEVVERMKAD-GVEPNVVTYTALIGEYCKGKGMDEAFSL 279
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ SG PD + ++ G
Sbjct: 280 YEGMVRSGVLPDVVTLSALVDG 301
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+I T+N L+ L + + M+ +G++PN +TY IL+
Sbjct: 773 MLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMK-KVGLEPNNLTYDILVTGYAKKS 831
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N EA+RL + GF P YN++M +
Sbjct: 832 NKVEALRLYCEMVSKGFIPKASTYNSLMSDF 862
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + + +M+ + IKPNL+TYT L+ + +++A
Sbjct: 603 LEPDQATYNTMIAARCREGKTSKALKLLKEMKRN-SIKPNLITYTTLVVGLLEAGVVKKA 661
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L++ ++ +GF P + +++
Sbjct: 662 KFLLNEMASAGFAPTSLTHQRVLQA 686
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD T+N L+ CK L + QM G+ PN+ T+ L+ + +
Sbjct: 738 MLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQ-GLSPNIATFNTLLGGLESAG 796
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++S + G +P+ Y+ ++ GY
Sbjct: 797 RIGEADTVLSDMKKVGLEPNNLTYDILVTGY 827
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + LV LC+ + Y +M +G+ PN VTY LID++ + E++
Sbjct: 290 PDVVTLSALVDGLCRDGQFSEAYALFREMD-KIGVAPNHVTYCTLIDSLAKARRGSESLG 348
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G D +Y +M
Sbjct: 349 LLGEMVSRGVVMDLVMYTALM 369
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ CK + + ++ + M S G+ P++VT + L+D +C EA
Sbjct: 255 PNVVTYTALIGEYCKGKGMDEAFSLYEGMVRS-GVLPDVVTLSALVDGLCRDGQFSEAYA 313
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G P+ Y T++
Sbjct: 314 LFREMDKIGVAPNHVTYCTLI 334
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L DI YN LV LC C + V + GI P+ +T+ LI C + +L A
Sbjct: 708 LHADITVYNTLVHVLC-CHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNA 766
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + G P+ +NT++ G
Sbjct: 767 FAIYAQMLHQGLSPNIATFNTLLGG 791
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TY LV C+ ++ + QM + PN+VT++ +I+ + L +A
Sbjct: 393 ITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEK-SVIPNVVTFSSIINGLVKRGCLGKA 451
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + DSG P+ Y T++ G+
Sbjct: 452 ADYMRKMKDSGIAPNVVTYGTLIDGF 477
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ T++ ++ L K L +++ +M+ S GI PN+VTY LID +
Sbjct: 426 KSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDS-GIAPNVVTYGTLIDGFFKFQGQE 484
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + G + + FV ++++ G
Sbjct: 485 AALDVYRDMLHEGVEANNFVVDSLVNG 511
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y L+ L K ++ + V Q + P+ V Y + I+ +C EA
Sbjct: 536 DHVNYTTLMDGLFKTGNMPAAFK-VGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSF 594
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G +PD YNT++
Sbjct: 595 LKEMRNTGLEPDQATYNTMI 614
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++FTYN +VK LCK + Y +D+M G+ P+L +Y + C+ + +A
Sbjct: 320 LVPNVFTYNCIVKKLCKSEKVDEAYQLLDEM-IERGVSPDLWSYNAIQAFHCDHCEVNKA 378
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+RL+S + PD YN ++K
Sbjct: 379 LRLISRMEKENCMPDRHTYNMVLK 402
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +Y+ ++ C+ + + + +D+MR + PN+ TY ++ +C ++ + EA
Sbjct: 285 LAPDACSYSIFIRAYCEVNDIHSAFQVLDRMR-RYNLVPNVFTYNCIVKKLCKSEKVDEA 343
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
+L+ + + G PD + YN I
Sbjct: 344 YQLLDEMIERGVSPDLWSYNAI 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L++ LCK ++ Y +M S G+ P+ +Y+I I C ++ A ++
Sbjct: 253 DVVAYNSLLEALCKGGNVDEAYKLFREM-GSNGLAPDACSYSIFIRAYCEVNDIHSAFQV 311
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ + P+ F YN I+K
Sbjct: 312 LDRMRRYNLVPNVFTYNCIVK 332
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ TY+ L++ + ++MR G ++V Y L++ +C N+ E
Sbjct: 214 EVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRER-GCAVDVVAYNSLLEALCKGGNVDE 272
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + +G PD Y+ ++ Y
Sbjct: 273 AYKLFREMGSNGLAPDACSYSIFIRAY 299
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
L+ LCK + + F D++ ++ + PN TY+IL+ + + EA +L + +
Sbjct: 191 LLYVLCKRKHVKQAQEFFDKV--NVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRER 248
Query: 76 GFKPDCFVYNTIMKG 90
G D YN++++
Sbjct: 249 GCAVDVVAYNSLLEA 263
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + P YN ++ +C S + ++M++S G+ P++VTY +LI +C
Sbjct: 494 MFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSS-GVPPSIVTYNLLIKGLCKQS 552
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA L+ +L + G PD YNT++
Sbjct: 553 QISEAEELLDSLRNYGLAPDVISYNTLI 580
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP I TYN L+K LCK ++ +D +R + G+ P++++Y LI C N A
Sbjct: 534 VPPSIVTYNLLIKGLCKQSQISEAEELLDSLR-NYGLAPDVISYNTLISACCYRSNTDRA 592
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
+ L + G KP Y +
Sbjct: 593 LELEKEMWKCGIKPSPRTYRML 614
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+Q+ PD TYN L+ L K +T ++ V +M + G+ P++ T+ LID
Sbjct: 385 IFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKN-GVNPSVETFNTLIDAY 443
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + ++S + + G KP+ Y +I+ +
Sbjct: 444 GRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAF 478
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ C+ L ++ QM++ L I+P+ +TY LI+ + + + EA LV +
Sbjct: 366 YNTLINGYCQIGDLEGAFSIFQQMKSRL-IRPDHITYNALINGLGKVERITEAHDLVIEM 424
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+G P +NT++ Y
Sbjct: 425 EKNGVNPSVETFNTLIDAY 443
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F ++P P+ TYN ++ K L + + QM G+KPN++TY +L+ +
Sbjct: 210 LFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRH-GLKPNVITYNVLLSGL 268
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + E ++ ++ PD F Y+ + G+
Sbjct: 269 CRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGH 303
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD FTY+ L + T+ + ++ G+K T +IL++ +C +
Sbjct: 287 RKMVPDGFTYSILFDGHSRTGDSQTMLSLFEE-SVKKGVKIGAYTCSILLNGLCKDGKIS 345
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++ L +SG +YNT++ GY
Sbjct: 346 KAEEVLQTLVNSGLLQTTVIYNTLINGY 373
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N L+ + L + + M+ G+KPN+V+Y +++ C + EA+
Sbjct: 431 PSVETFNTLIDAYGRAGQLEKCFIILSDMQEK-GLKPNVVSYGSIVNAFCKNGKILEAVA 489
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + P VYN I+ Y
Sbjct: 490 ILDDMFIKDVLPGAQVYNAIIDAY 513
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ +Y +V CK + +D M + P Y +ID +
Sbjct: 462 KGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIK-DVLPGAQVYNAIIDAYIECGSTD 520
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A L + SG P YN ++KG
Sbjct: 521 QAFMLAEKMKSSGVPPSIVTYNLLIKG 547
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 39/91 (42%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ + PD FT+N V+ L + +M PN +Y ++I +
Sbjct: 143 LVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAG 202
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L + + P+ YNT++ G+
Sbjct: 203 TDCDAVKLFDEMPEKAVVPNHITYNTMIDGH 233
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PP+I TYN L+ LCK L + ++ S ++P + TY I+I+ +
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGM 511
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L LS G KPD YNT++ G+
Sbjct: 512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P + +TY+ L+ C C+ L + +M LG +PN+VT + L++ C++K + EA
Sbjct: 112 MPHNHYTYSILINCFCRRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + +G++P+ +NT++ G
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHG 195
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + Y ++ LCK + + N +M GI+PN+VTY+ LI +CN +
Sbjct: 251 KLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSD 309
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + PD F ++ ++ +
Sbjct: 310 ASRLLSDMIERKINPDVFTFSALIDAF 336
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ PD+FT++ L+ K L D+M I P++VTY+ LI+ C
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-VKRSIDPSIVTYSSLINGFCMHD 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA ++ + PD Y+T++KG+
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVSYSTLIKGF 406
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY +V LCK + +++M ++P ++ YT +ID +C K
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQG-KLEPGVLIYTTIIDGLCKNK 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +A+ L + G +P+ Y++++
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLI 298
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P I+TYN +++ +CK + ++ + G+KP++V Y +I C + E
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEE 554
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 555 ADALFKEMKEDGTLPNSGCYNTLIRA 580
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ +Y+ L+K CK + + +M + G+ N VTYT LI +
Sbjct: 387 MVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREM-SQRGLVGNTVTYTTLIQGLFQAG 445
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + G P+ YNT++ G
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TY L++ L + +M S G+ PN++TY L+D +C L
Sbjct: 425 RGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEM-VSDGVPPNIMTYNTLLDGLCKNGKLE 483
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM + L S +P + YN +++G
Sbjct: 484 KAMVVFEYLQRSKMEPTIYTYNIMIEG 510
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+I T + L+ C + ++ VDQM + G +PN VT+ LI + EA+
Sbjct: 148 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT-GYQPNTVTFNTLIHGLFLHNKASEAV 206
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD Y ++ G
Sbjct: 207 ALIDRMVAKGCQPDLVTYGVVVNG 230
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ L + +D+M A G +P+LVTY ++++ +C + A
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFI 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + +P +Y TI+ G
Sbjct: 243 LLNKMEQGKLEPGVLIYTTIIDG 265
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P I TY+ L+ C L + M S P++V+Y+ LI C K
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM-VSKHCFPDVVSYSTLIKGFCKAK 410
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E M L +S G + Y T+++G
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIQG 440
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY+ L+ CLC + + M I P++ T++ LID L
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLV 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + P Y++++ G+
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGF 371
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + +QM+ +LG+ N TY+ILI+ C L A+
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGMPHNHYTYSILINCFCRRSQLPLALA 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++P+ ++++ GY
Sbjct: 138 VLGKMMKLGYEPNIVTLSSLLNGY 161
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DIFTYN L+ +CK + + + MR I PN+VTY+ +ID EA+ L
Sbjct: 339 DIFTYNTLIDAVCKGGQMELAASIMSSMRLK-NISPNVVTYSTMIDGYGKLGCFEEAIGL 397
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ +SG +PD YNT++ Y
Sbjct: 398 YHDMKESGVRPDRVSYNTLIDIY 420
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 6 LPPDIFTYNFLVKCLCKC---RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L P++ TY+ L+ K + T++ FV+ RA G+KP++V Y+ LID+ C +
Sbjct: 476 LVPNVLTYSALIDAYSKAGMHQDATSI--FVEFKRA--GLKPDVVLYSSLIDSCCKCGLV 531
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L+ ++ +G +P+ YN+++ Y
Sbjct: 532 EDAVVLLQEMTQAGIQPNIVTYNSLIDAY 560
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D+ TYN L+ K D+M+A G+ PN++TY+ LID ++A
Sbjct: 441 LKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAE-GLVPNVLTYSALIDAYSKAGMHQDA 499
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ +G KPD +Y++++
Sbjct: 500 TSIFVEFKRAGLKPDVVLYSSLI 522
Score = 42.0 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ +C SL V GI+ ++ TY LID VC + A
Sbjct: 303 PDRITFNSLI-AVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAAS 361
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++S++ P+ Y+T++ GY
Sbjct: 362 IMSSMRLKNISPNVVTYSTMIDGY 385
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P++ TY+ ++ K M+ S G++P+ V+Y LID
Sbjct: 368 LKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKES-GVRPDRVSYNTLIDIYAKLGRF 426
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ + G K D YN ++ Y
Sbjct: 427 DDALTACKDMERVGLKADVVTYNALIDAY 455
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 9 DIFTYNFLVKCLCK---CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK--NLR 63
+++ Y+ +V + CR V+ Q G KPNL+TY +ID C +L+
Sbjct: 233 NVYAYSAMVSAYGRSGRCREALKVF----QAMKKAGCKPNLITYNTIID-ACGKGGVDLK 287
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ + + G +PD +N+++
Sbjct: 288 KALDIFEEMQKEGVEPDRITFNSLI 312
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 8 PDIFTYNFLVKCLCKCR-SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE-A 65
P++ TYN ++ K L + ++M+ G++P+ +T+ LI VC+ +L E +
Sbjct: 267 PNLITYNTIIDACGKGGVDLKKALDIFEEMQKE-GVEPDRITFNSLI-AVCSRGSLWEDS 324
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
R+ + + G + D F YNT++
Sbjct: 325 QRVFAEMQRRGIEQDIFTYNTLI 347
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN L+ K M +G+K ++VTY LID ++A
Sbjct: 408 PDRVSYNTLIDIYAKLGRFDDALTACKDME-RVGLKADVVTYNALIDAYGKQGKYKDAAG 466
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G P+ Y+ ++ Y
Sbjct: 467 LFDKMKAEGLVPNVLTYSALIDAY 490
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PDIFT++ ++ LC+ + + +M G+ PN VTY ILI ++C
Sbjct: 523 LLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEM-VMWGLSPNAVTYNILIHSLCIIG 581
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +M+L+ + G PD F +N +++ +
Sbjct: 582 DVPRSMKLLRKMQTDGINPDVFSFNALIQSF 612
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+YN ++ C CK + N +M+ GI PNLVT+ LID C + ++ L+
Sbjct: 464 SYNMVIDCFCKTSMMDKATNTFKEMQYK-GIPPNLVTFNTLIDGYCKGGEICKSRDLLVM 522
Query: 72 LSDSGFKPDCFVYNTIMKG 90
L + GFKPD F +++I+ G
Sbjct: 523 LLEHGFKPDIFTFSSIIDG 541
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + P YN ++ L K SL Y QM A KP+ TY ILI VC + +
Sbjct: 210 FLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSAD-NCKPDRFTYNILIHGVCRSGVV 268
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+RLV + G+ P+ F Y ++ G+
Sbjct: 269 DEALRLVKQMEGLGYSPNVFTYTILIDGF 297
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+ PD FTYN L+ +C+ + V QM LG PN+ TYTILID
Sbjct: 238 LKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEG-LGYSPNVFTYTILIDG 296
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N K + EA R++ + P + + G
Sbjct: 297 FFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHG 331
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 3 FKQLPPDIFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
+K +PP++ T+N L+ CK C+S + ++ G KP++ T++ +ID +C
Sbjct: 490 YKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEH-----GFKPDIFTFSSIIDGLCR 544
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
K + +A+ S + G P+ YN ++
Sbjct: 545 AKQIEDALGCFSEMVMWGLSPNAVTYNILI 574
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+F++N L++ C+ + M SLG+ P+ TY I C + EA
Sbjct: 600 PDVFSFNALIQSFCRMGKVEDAKKLFSSM-LSLGLIPDNYTYVAFIKVFCQSGRFNEAKE 658
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ +G PD F N I+
Sbjct: 659 LFLSMEANGCMPDSFTCNIIL 679
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P+ TYN L+ LC + + +M+ GI P++ ++ LI + C
Sbjct: 558 MVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTD-GINPDVFSFNALIQSFCRMG 616
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +A +L S++ G PD + Y +K
Sbjct: 617 KVEDAKKLFSSMLSLGLIPDNYTYVAFIK 645
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L+K L +T ++ +QM G+ N+ +Y ++ID C T + +A
Sbjct: 429 TYLALIKALYMAGKVTEGNHYFNQMVKD-GLLCNVCSYNMVIDCFCKTSMMDKATNTFKE 487
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G P+ +NT++ GY
Sbjct: 488 MQYKGIPPNLVTFNTLIDGY 507
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++FTYN +VK LCK + Y +D+M G+ P+L +Y + C+ + +A
Sbjct: 293 LVPNVFTYNCIVKKLCKSEKVDEAYQLLDEM-IERGVSPDLWSYNAIQAFHCDHCEVNKA 351
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+RL+S + PD YN ++K
Sbjct: 352 LRLISRMEKENCMPDRHTYNMVLK 375
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +Y+ ++ C+ + + + +D+MR + PN+ TY ++ +C ++ + EA
Sbjct: 258 LAPDACSYSIFIRAYCEVNDIHSAFQVLDRMR-RYNLVPNVFTYNCIVKKLCKSEKVDEA 316
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
+L+ + + G PD + YN I
Sbjct: 317 YQLLDEMIERGVSPDLWSYNAI 338
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L++ LCK ++ Y +M S G+ P+ +Y+I I C ++ A ++
Sbjct: 226 DVVAYNSLLEALCKGGNVDEAYKLFREM-GSNGLAPDACSYSIFIRAYCEVNDIHSAFQV 284
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ + P+ F YN I+K
Sbjct: 285 LDRMRRYNLVPNVFTYNCIVK 305
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ TY+ L++ + ++MR G ++V Y L++ +C N+ E
Sbjct: 187 EVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRER-GCAVDVVAYNSLLEALCKGGNVDE 245
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + +G PD Y+ ++ Y
Sbjct: 246 AYKLFREMGSNGLAPDACSYSIFIRAY 272
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
L+ LCK + + F D++ ++ + PN TY+IL+ + + EA +L + +
Sbjct: 164 LLYVLCKRKHVKQAQEFFDKV--NVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRER 221
Query: 76 GFKPDCFVYNTIMKG 90
G D YN++++
Sbjct: 222 GCAVDVVAYNSLLEA 236
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +YN ++ K Y+ +M GI P++VTY+ +I +C + + +AM
Sbjct: 198 PPDVVSYNTVLNGFFKEGDSDKAYSTYHEM-LDRGILPDVVTYSSIIAALCKAQAMDKAM 256
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + +G PDC YN+I+ GY
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGY 281
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ C + + M S+G+KP++VTY LI+ C + +A+
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASM-VSVGVKPDIVTYGTLINGYCRVSRMDDALA 572
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG P+ YN I++G
Sbjct: 573 LFKEMVSSGVSPNIITYNIILQG 595
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ C + +MR+ G++PN+VTY+ L++ +C EA +
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD-GVEPNVVTYSSLMNYLCKNGRSTEARK 327
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G +PD Y T+++GY
Sbjct: 328 IFDSMTKRGLEPDIATYRTLLQGY 351
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N ++ CK + D M +G+KP+++TY LID C + EA +L++++
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLM-VRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASM 542
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G KPD Y T++ GY
Sbjct: 543 VSVGVKPDIVTYGTLINGY 561
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY L+ C+ + +M +S G+ PN++TY I++ + +T+ A
Sbjct: 549 PDIVTYGTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRRTAAAKE 607
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +++ SG + + YN I+ G
Sbjct: 608 LYVSITKSGTQLELSTYNIILHG 630
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ TY+ ++ LCK +++ ++ M + G+ P+ +TY ++ C++
Sbjct: 227 MLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSG 285
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +P+ Y+++M
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLM 313
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D T+ L+K LC + + + V + LG P++ +Y L+ +C+ +EA+ L
Sbjct: 126 DAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185
Query: 69 VSALSD---SGFKPDCFVYNTIMKGY 91
+ ++D G PD YNT++ G+
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGF 211
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD +N L+ K + +MR G+ PN+V Y +ID +C +
Sbjct: 367 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH-GLNPNVVCYGTVIDVLCKSG 425
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +AM + D G P+ VY +++ G
Sbjct: 426 SVDDAMLYFEQMIDEGLTPNIIVYTSLIHG 455
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P+I Y L+ LC C + +M GI N + + +ID+ C
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM-LDRGICLNTIFFNSIIDSHCKEG 495
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E+ +L + G KPD YNT++ G
Sbjct: 496 RVIESEKLFDLMVRIGVKPDIITYNTLIDG 525
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + TY L+ C C+ L + + + G + + +T+T L+ +C K +
Sbjct: 87 KVTPTVHTYAILIGCCCRAGRLDLGFAALGNV-VKKGFRVDAITFTPLLKGLCADKRTSD 145
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ G PD F YN ++KG
Sbjct: 146 AMDIVLRRMTELGCIPDVFSYNNLLKG 172
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TY+ L+ LCK T D M G++P++ TY L+ L E
Sbjct: 302 VEPNVVTYSSLMNYLCKNGRSTEARKIFDSM-TKRGLEPDIATYRTLLQGYATKGALVEM 360
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G +PD V+N ++ Y
Sbjct: 361 HALLDLMVRNGIQPDHHVFNILICAY 386
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y ++ LCK S+ + +QM G+ PN++ YT LI +C +A
Sbjct: 407 LNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHGLCTCDKWDKA 465
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G + +N+I+ +
Sbjct: 466 EELILEMLDRGICLNTIFFNSIIDSH 491
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDI TY L++ +L ++ +D M + GI+P+ + ILI + +
Sbjct: 335 RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN-GIQPDHHVFNILICAYAKQEKVD 393
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G P+ Y T++
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVI 418
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N ++ L KC + + A+ G+ P++ TY+++ +N+ +L E L +
Sbjct: 658 TFNIMIGALLKCGRMDEAKDLFAAHSAN-GLVPDVRTYSLMAENLIEQGSLEELDDLFLS 716
Query: 72 LSDSGFKPDCFVYNTIMK 89
+ ++G D + N+I++
Sbjct: 717 MEENGCSADSRMLNSIVR 734
>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
Length = 1139
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F YN L+ LCK +M A G++PN VTY ILI +C + +A+
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAILIHALCKRGMIEDALC 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + D G K + YN+++ GY
Sbjct: 395 LFDKMRDKGIKVTVYPYNSLINGY 418
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T+ L+ CK + + D+M S + PN VT+ ++I+ C N+R+A +L
Sbjct: 479 YTFTALINGFCKDKKMDEAARLFDKMIDS-NVIPNEVTFNVMIEGYCLVGNIRKAFQLYD 537
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G KPD + Y +++ G
Sbjct: 538 QMVEMGLKPDNYTYRSLISG 557
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTYN + + + M G ++V++ ILI +C ++EA+
Sbjct: 721 PNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ--GHLASIVSFNILIKGLCKAGKIQEAID 778
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S +++SGF PDC Y+TI+
Sbjct: 779 LMSKITESGFSPDCISYSTII 799
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I ++N L+K LCK + + + ++ S G P+ ++Y+ +I +C ++ +A L
Sbjct: 757 IVSFNILIKGLCKAGKIQEAIDLMSKITES-GFSPDCISYSTIIHELCKMGDINKAFELW 815
Query: 70 SALSDSGFKPDCFVYNTIMK 89
+ + G KPD YN ++
Sbjct: 816 NEMLYKGLKPDVVAYNIFIR 835
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P DIF Y ++ L K ++ N DQM G PN VT+T+LI+N+C + L A
Sbjct: 651 PDDIF-YTCMIDALSKEENMIQALNCWDQMVVD-GYSPNTVTHTVLINNLCKSGYLGSAE 708
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L + P+ F YN +
Sbjct: 709 LLCKEMLAGNVLPNKFTYNCFL 730
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY L+ LCK + D+MR GIK + Y LI+ C +L
Sbjct: 367 RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDK-GIKVTVYPYNSLINGYCKQGSLD 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+S + G P Y+ ++ G
Sbjct: 426 RARGLLSGMVKEGLTPTAASYSPLIAG 452
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ T+N +++ C ++ + DQM +G+KP+ TY LI +C T
Sbjct: 504 MIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM-VEMGLKPDNYTYRSLISGLCLTS 562
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A V+ L +S + F ++ G+
Sbjct: 563 GVSKANEFVADLENSYAVLNNFSLTALLYGF 593
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV C+ L M LG P+ + +ID + + + EA L
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDM-IRLGFVPSEANCSFMIDELRKKELVEEAFSL 325
Query: 69 VSALSDSGFKPDCFVYNTIM 88
L D G P+ F YN ++
Sbjct: 326 ACKLGDLGMVPNVFAYNALI 345
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE-AM 66
PD +Y+ ++ LCK + + ++M G+KP++V Y I I CN + A+
Sbjct: 790 PDCISYSTIIHELCKMGDINKAFELWNEMLYK-GLKPDVVAYNIFI-RWCNVHGESDKAL 847
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + + SG +P+ Y ++ G
Sbjct: 848 GIYTNMIRSGVQPNWDTYRALLSG 871
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
LG+ PN+ Y LID +C + +A RL ++ G +P+ Y ++
Sbjct: 332 LGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILI 380
Score = 34.3 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T + ++ L K R + D+M S G+ + YT I C ++NL A LV
Sbjct: 164 YTASQILFSLVKIRQFALARDLFDKMLQS-GVHLDEYVYTAGIRAYCESRNLDGARGLVV 222
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G K YN +M G
Sbjct: 223 RMESEGVKASAVPYNVLMYG 242
>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PPD++T N L+ C R L ++ + ++ LG +P+ T+ LI +C + EA
Sbjct: 181 IPPDVYTLNILINSFCHLRRLGYAFSVLAKL-LKLGCQPDNTTFNTLIRGLCVEGKIGEA 239
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L GF+PD Y T+M G
Sbjct: 240 LHLFDKTIGEGFQPDVVTYGTLMNG 264
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D TYN L+ LC L +M AS G P+LVTY IL+D +C +L EA
Sbjct: 461 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS-GQIPDLVTYRILLDYLCKNHHLAEA 519
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M L+ A+ S D VYN + G
Sbjct: 520 MVLLKAIEGSNLDADILVYNIAIDG 544
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK + + + M +PN++ Y +ID++C + + EA
Sbjct: 253 PDVVTYGTLMNGLCKVGNTSAAIRLLRSM-VQKNCRPNVIAYNTIIDSLCKDRQVTEAFN 311
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L S + G PD F YN+++
Sbjct: 312 LFSEMITKGISPDIFTYNSLI 332
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ YN ++ LCK R +T +N +M + GI P++ TY LI +CN
Sbjct: 281 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEM-ITKGISPDIFTYNSLIHALCNLC 339
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ L++ + +S P+ V++T++
Sbjct: 340 EWKHVTTLLNEMVNSKIMPNVVVFSTVV 367
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L DI YN + +C+ L + + +S G++P++ TY I+I +C L EA
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVRTYNIMIHGLCKRGLLDEA 589
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + ++G D +YNTI++G+
Sbjct: 590 NKLFRKMDENGCSRDGCIYNTIIRGF 615
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ ++ +V LCK + ++ VD M G++P++VTYT L+D C
Sbjct: 351 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMM-IKRGVEPDVVTYTALMDGHCLRS 409
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + G P+ YN ++ GY
Sbjct: 410 EMDEAVKVFDTMVHKGCVPNVRSYNILINGY 440
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LCK L + + S + +++ Y I ID +C L A
Sbjct: 498 PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS-NLDADILVYNIAIDGMCRAGELEAARD 556
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S LS G +PD YN ++ G
Sbjct: 557 LFSNLSSKGLQPDVRTYNIMIHG 579
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + L+ + K + +TV + QM S GI P++ T ILI++ C+ + L A
Sbjct: 147 PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMD-SFGIPPDVYTLNILINSFCHLRRLGYAF 205
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ L G +PD +NT+++G
Sbjct: 206 SVLAKLLKLGCQPDNTTFNTLIRG 229
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L++ LC + + D+ G +P++VTY L++ +C N A+R
Sbjct: 218 PDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE-GFQPDVVTYGTLMNGLCKVGNTSAAIR 276
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ +P+ YNTI+
Sbjct: 277 LLRSMVQKNCRPNVIAYNTII 297
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ TY L+ C + D M G PN+ +Y ILI+ C +
Sbjct: 386 MIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM-VHKGCVPNVRSYNILINGYCQIQ 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L+ +S G D YNT++ G
Sbjct: 445 RMDKAMGLLEQMSLQGLIADTVTYNTLIHG 474
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++ +YN L+ C+ + + ++QM G+ + VTY LI +C+
Sbjct: 421 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ-GLIADTVTYNTLIHGLCHVG 479
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L+ A+ L + SG PD Y ++
Sbjct: 480 RLQHAIALFHEMVASGQIPDLVTYRILL 507
>gi|255661024|gb|ACU25681.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 376
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK Y+ V QM G P+++TY+ L +C + + A++
Sbjct: 197 PTIVTYNXLINGLCKGERYAEAYDLVKQMLEK-GFNPSVITYSSLFKGLCQGRKVEMALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + GFKPD ++N ++ G
Sbjct: 256 LWKKVISKGFKPDVQMHNILIHG 278
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + TY+ L K LC+ R + ++ S G KP++ + ILI +CN
Sbjct: 225 MLEKGFNPSVITYSSLFKGLCQGRKVEMALQLWKKV-ISKGFKPDVQMHNILIHGLCNVG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ L ++ P+ NT+M+G+
Sbjct: 284 KIELALALYFGMNRWKCSPNLVTLNTLMEGF 314
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ L +M ++ P +VTY LI+ +C + EA
Sbjct: 162 PNAHVYNSLINGLVGASKYEDAICAFQEM-GNMDCSPTIVTYNXLINGLCKGERYAEAYD 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + GF P Y+++ KG
Sbjct: 221 LVKQMLEKGFNPSVITYSSLFKG 243
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+I K PD+ +N L+ LC K +Y +++ + S PNLVT L++
Sbjct: 260 VISKGFKPDVQMHNILIHGLCNVGKIELALALYFGMNRWKCS----PNLVTLNTLMEGFY 315
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++R + + + + + KPD YN +KG
Sbjct: 316 KDGDVRSGLVIWARILRNELKPDIISYNITLKG 348
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + ++ G+ + Y+ +I+ +C L +A+ +
Sbjct: 93 DSTTYGILVHGFCKNGHNNKSLHVLEIAEQKGGVL-DAFAYSAMINGLCKEAKLDKAISV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+++++++G KP+ VYN+++ G
Sbjct: 152 LNSMTNNGCKPNAHVYNSLING 173
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ ++ +V LCK + ++ VD M G++PN+VTY L+D C
Sbjct: 260 MVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMM-IKRGVEPNVVTYNALMDGHCLRS 318
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + GF PD Y+T++ GY
Sbjct: 319 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGY 349
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P IFTYN L+ LC V +++M S I PN+V ++ ++D +C
Sbjct: 225 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNS-KIMPNVVIFSTVVDALCKEG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +P+ YN +M G+
Sbjct: 284 KVMEAHDVVDMMIKRGVEPNVVTYNALMDGH 314
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI Y ++ +C+ L + + +S G+ PN+ TYTI+I+ +C L EA
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNL-SSKGLHPNVWTYTIMINGLCQQGLLAEA 498
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + G+ P+ YN I +G+
Sbjct: 499 SKLFGEMKRKGYSPNGCTYNLITRGF 524
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+I+T N L+ C + L ++ + ++ LG +PN+ T+ LI +C + E
Sbjct: 90 IPPNIYTLNILINSFCHLQRLGFAFSVLAKI-LKLGHQPNIATFNTLIRGLCVEGKIGEV 148
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+P+ Y T++ G
Sbjct: 149 LHLFDKMIGEGFQPNVVTYGTLING 173
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK S + + M +P++V YT +ID++C +
Sbjct: 155 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQG-NCQPDVVVYTSIIDSLCKDR 213
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L S + G P F YN+++
Sbjct: 214 QVTQAFNLFSEMIHQGISPSIFTYNSLIHA 243
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L P+ TY+ L+ LC L +M + G P+ V+Y IL+D +C + L
Sbjct: 368 KELIPNTVTYSTLMHGLCHVGRLQDAIALFHEM-VTRGQIPDFVSYCILLDYLCKNRRLD 426
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ A+ S PD +Y ++ G
Sbjct: 427 EAIALLKAIEGSNMDPDIQIYTIVIDG 453
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LCK R +T +N +M GI P++ TY LI +CN +
Sbjct: 197 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQ-GISPSIFTYNSLIHALCNLCEWKHVTA 255
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + +S P+ +++T++
Sbjct: 256 LLNEMVNSKIMPNVVIFSTVV 276
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I + L+ + K + +TV + QM S GI PN+ T ILI++ C+ + L A
Sbjct: 56 PPSIADFTKLLISITKMKHYSTVLSLSHQMD-SFGIPPNIYTLNILINSFCHLQRLGFAF 114
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G +P+ +NT+++G
Sbjct: 115 SVLAKILKLGHQPNIATFNTLIRG 138
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TYN L+ C + D M G P++V+Y+ LI+ C +
Sbjct: 295 MIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCK-GFAPDVVSYSTLINGYCKIQ 353
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + P+ Y+T+M G
Sbjct: 354 RIEKAMYLFEEMCRKELIPNTVTYSTLMHG 383
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ ++ +V LCK + ++ VD M G++PN+VTY L+D C
Sbjct: 269 MVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMM-IKRGVEPNVVTYNALMDGHCLRS 327
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ + GF PD Y+T++ GY
Sbjct: 328 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGY 358
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P IFTYN L+ LC V +++M S I PN+V ++ ++D +C
Sbjct: 234 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNS-KIMPNVVIFSTVVDALCKEG 292
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +V + G +P+ YN +M G+
Sbjct: 293 KVMEAHDVVDMMIKRGVEPNVVTYNALMDGH 323
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI Y ++ +C+ L + + +S G+ PN+ TYTI+I+ +C L EA
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNL-SSKGLHPNVWTYTIMINGLCQQGLLAEA 507
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + G+ P+ YN I +G+
Sbjct: 508 SKLFGEMKRKGYSPNGCTYNLITRGF 533
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP+I+T N L+ C + L ++ + ++ LG +PN+ T+ LI +C + E
Sbjct: 99 IPPNIYTLNILINSFCHLQRLGFAFSVLAKI-LKLGHQPNIATFNTLIRGLCVEGKIGEV 157
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + GF+P+ Y T++ G
Sbjct: 158 LHLFDKMIGEGFQPNVVTYGTLING 182
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LCK S + + M +P++V YT +ID++C +
Sbjct: 164 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQG-NCQPDVVVYTSIIDSLCKDR 222
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L S + G P F YN+++
Sbjct: 223 QVTQAFNLFSEMIHQGISPSIFTYNSLIHA 252
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L P+ TY+ L+ LC L +M + G P+ V+Y IL+D +C + L
Sbjct: 377 KELIPNTVTYSTLMHGLCHVGRLQDAIALFHEM-VTRGQIPDFVSYCILLDYLCKNRRLD 435
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L+ A+ S PD +Y ++ G
Sbjct: 436 EAIALLKAIEGSNMDPDIQIYTIVIDG 462
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y ++ LCK R +T +N +M GI P++ TY LI +CN +
Sbjct: 206 PDVVVYTSIIDSLCKDRQVTQAFNLFSEM-IHQGISPSIFTYNSLIHALCNLCEWKHVTA 264
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + +S P+ +++T++
Sbjct: 265 LLNEMVNSKIMPNVVIFSTVV 285
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP I + L+ + K + +TV + QM S GI PN+ T ILI++ C+ + L A
Sbjct: 65 PPSIADFTKLLISITKMKHYSTVLSLSHQMD-SFGIPPNIYTLNILINSFCHLQRLGFAF 123
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+++ + G +P+ +NT+++G
Sbjct: 124 SVLAKILKLGHQPNIATFNTLIRG 147
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++ TYN L+ C + D M G P++V+Y+ LI+ C +
Sbjct: 304 MIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCK-GFAPDVVSYSTLINGYCKIQ 362
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +AM L + P+ Y+T+M G
Sbjct: 363 RIEKAMYLFEEMCRKELIPNTVTYSTLMHG 392
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ L K ++ VDQM G+ PN++TY +ID + T +
Sbjct: 364 KNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDR-GVPPNILTYNSIIDALFKTHQVD 422
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ D G +P + Y ++ G
Sbjct: 423 KAIALITKFKDQGIQPSMYTYTILIDG 449
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD +T+N LV CK R + V M GI P++VTY L+D C K
Sbjct: 256 IILENIKPDGYTFNILVDGFCKDRKMKEGKT-VFAMMMKQGIIPDVVTYNSLMDGYCLVK 314
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A + + ++ G PD YN ++ G+
Sbjct: 315 EVNTAKSIFNTMAQGGVNPDIRSYNILINGF 345
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C + + T + + M A G+ P++ +Y ILI+ C K + +AM
Sbjct: 298 PDVVTYNSLMDGYCLVKEVNTAKSIFNTM-AQGGVNPDIRSYNILINGFCKIKKVDKAMN 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + P+ YN+++ G
Sbjct: 357 LFNEMHCKNIIPNVVTYNSLIDG 379
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++ TY+ L+ L + +++ IKP+ T+ IL+D C +
Sbjct: 221 MVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILE-NIKPDGYTFNILVDGFCKDR 279
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++E + + + G PD YN++M GY
Sbjct: 280 KMKEGKTVFAMMMKQGIIPDVVTYNSLMDGY 310
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 29/110 (26%)
Query: 4 KQLPPDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC-- 57
+ +PP+I TYN ++ L K +++ + F DQ GI+P++ TYTILID +C
Sbjct: 399 RGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQ-----GIQPSMYTYTILIDGLCKV 453
Query: 58 -------NTKNL-----------REAMRLVSALSDSGFKPDCFVYNTIMK 89
NT N+ EA+ L+S + DS P+ Y ++
Sbjct: 454 EGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIR 503
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCR----SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
F+ + P++F N L+ C C+ + + F D++ A LG + V+Y LI +C
Sbjct: 114 FRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVA-LGFHLDQVSYGTLIHGLCK 172
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
R A+ L+ + + + +YNT++ G
Sbjct: 173 VGETRAALDLLQRVDGKLVQLNAVMYNTVIYG 204
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ +YN L+K CK + D+M + G+ PN +T+T LI +C
Sbjct: 445 MVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEM-SHKGLTPNSITHTTLISGLCQAG 503
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + G PD Y+T++ G+
Sbjct: 504 RPYAAKELFKKMGSHGCPPDLITYSTLLSGF 534
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+ T++ V CK ++ + ++ M G++PN+VTY L+D C
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLM-IERGLRPNVVTYNSLMDGYCLHS 433
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + + G PD YN ++KGY
Sbjct: 434 QMDEARKVFDIMVNKGCAPDVLSYNILIKGY 464
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y+ ++ LCK R + + MR S+GI P +VTY LI +CN+ ++A
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMR-SIGISPTVVTYNSLIYGMCNSGQWKQASI 300
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + KPD ++ ++
Sbjct: 301 LFKEMLEWNMKPDVVTFSILV 321
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P ++T+ +V LCK + ++ +M L +P +V+Y+I+ID++C + + EA+
Sbjct: 207 PTVYTHTMIVNGLCKIGKTSAAIVWMKKM-VELDCEPEVVSYSIIIDSLCKNRLVNEAVD 265
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P YN+++ G
Sbjct: 266 LFYHMRSIGISPTVVTYNSLIYG 288
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TY+ L+ CK L + ++ S +KPN V IL+ +C L +A
Sbjct: 521 PPDLITYSTLLSGFCKHGHLDEALALFEALKKS-QLKPNHVICKILLGGMCKAGKLEDAK 579
Query: 67 RLVSALSDSGFKPD 80
L S+LS +PD
Sbjct: 580 ELFSSLSIEELQPD 593
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ T+ L+ LC+ +M S G P+L+TY+ L+ C +L
Sbjct: 483 KGLTPNSITHTTLISGLCQAGRPYAAKELFKKM-GSHGCPPDLITYSTLLSGFCKHGHLD 541
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L AL S KP+ + ++ G
Sbjct: 542 EALALFEALKKSQLKPNHVICKILLGG 568
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++FK++ PD+ T++ LV LCK + + +M + ++P++VTY+ LI
Sbjct: 300 ILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKM-IQIAMEPDIVTYSSLIHG 358
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYN 85
VC + +E+ L++ + +PD ++
Sbjct: 359 VCKSSLWKESSTLLNEMLSRNIRPDVVTFS 388
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + TYN L+ +C +M +KP++VT++IL+D +C + EA
Sbjct: 275 ISPTVVTYNSLIYGMCNSGQWKQASILFKEM-LEWNMKPDVVTFSILVDALCKEGVVLEA 333
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + +PD Y++++ G
Sbjct: 334 LSVFGKMIQIAMEPDIVTYSSLIHG 358
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++T L+ CLC + ++ + ++ LG KP+++T+ LI+ +C + EAM +
Sbjct: 139 VYTLTILINCLCHLHLVGLGFSVLGKI-FKLGFKPSIITFNTLINGLCIEGRIVEAMEQL 197
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G++P + + I+ G
Sbjct: 198 DYIMSRGYQPTVYTHTMIVNG 218
>gi|255548041|ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545557|gb|EEF47061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 262
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +Y L++ LC+ + ++ M + G P+ +TYT L++++C K LREA +
Sbjct: 27 PDIESYRILMQGLCRRSQVNGAVGLLEDM-LNKGFVPDCLTYTTLLNSLCRKKKLREAYK 85
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G PD YNTI+ G+
Sbjct: 86 LLCRMKVKGCNPDIVHYNTIISGF 109
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD TY L+ LC+ + L Y + +M+ G P++V Y +I C
Sbjct: 55 MLNKGFVPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVK-GCNPDIVHYNTIISGFCREG 113
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A +++ + +G P+ Y T++ G
Sbjct: 114 RAMDARKVLGDMECNGCLPNLVSYRTLVAG 143
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ C+ + M + G PNLV+Y L+ +C+ EA
Sbjct: 97 PDIVHYNTIISGFCREGRAMDARKVLGDMECN-GCLPNLVSYRTLVAGICDQGMFDEAKS 155
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + GF P V + ++KG+
Sbjct: 156 YLEEMILKGFSPHFSVSHALVKGF 179
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 17 VKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76
++ LC L+ Y +QM + P++ +Y IL+ +C + A+ L+ + + G
Sbjct: 1 MRALCLTGELSVAYKLFNQMFKR-DVLPDIESYRILMQGLCRRSQVNGAVGLLEDMLNKG 59
Query: 77 FKPDCFVYNTIM 88
F PDC Y T++
Sbjct: 60 FVPDCLTYTTLL 71
>gi|413944087|gb|AFW76736.1| hypothetical protein ZEAMMB73_938811 [Zea mays]
Length = 496
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 4 KQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR--ASLGIKPNLVTYTILIDNVCNTK 60
K LP P+ YN LVK K L T + +D+MR +KPNLVTY+ LI +C
Sbjct: 175 KYLPRPNTCVYNILVKHYVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGG 234
Query: 61 NLREAMRLVSALSDSG-FKPDCFVYNTIMKGY 91
++EA L + + PD +YN I+ G+
Sbjct: 235 KMKEAFELFEEMIEKDRIVPDQLLYNVIIDGF 266
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ F Y L+ CK + + ++MR S G++P+ V+YT LI +C ++ E +
Sbjct: 289 PNTFNYATLINGHCKKADIEAARSVFEEMRNS-GVEPDAVSYTALIGCLCRHGSVDEGIG 347
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + G + D YN +++G
Sbjct: 348 LVLEMKEKGCRADVVTYNLVIEG 370
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +Y L+ CLC+ S+ V +M+ G + ++VTY ++I+ +C EAM
Sbjct: 324 PDAVSYTALIGCLCRHGSVDEGIGLVLEMKEK-GCRADVVTYNLVIEGLCKDGRTVEAMG 382
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ ++ G K + Y +M
Sbjct: 383 LLESVPLEGVKLNVASYRILM 403
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 42/84 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC+ + + ++M I P+ + Y ++ID C + +A
Sbjct: 218 PNLVTYSTLIGGLCRGGKMKEAFELFEEMIEKDRIVPDQLLYNVIIDGFCRQGQVDKARA 277
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + +P+ F Y T++ G+
Sbjct: 278 IFGFMRKNECEPNTFNYATLINGH 301
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI------KPNLVTYTILIDNVCN 58
++ PD YN ++ C+ VD+ RA G +PN Y LI+ C
Sbjct: 251 RIVPDQLLYNVIIDGFCR-------QGQVDKARAIFGFMRKNECEPNTFNYATLINGHCK 303
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ A + + +SG +PD Y ++
Sbjct: 304 KADIEAARSVFEEMRNSGVEPDAVSYTALI 333
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY LV+ LCK + ++ +D MR GI PNL TY LI + N + L EA+
Sbjct: 365 PDVVTYTILVEALCKSGKVDQAFDMLDVMRVR-GIVPNLHTYNTLISGLLNLRRLDEALE 423
Query: 68 LVSALSDSGFKPDCFVY 84
L + + G P + Y
Sbjct: 424 LFNNMESLGVAPTAYSY 440
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +YN ++ L K R L + +M+ + GI P L TY LI + N + +A
Sbjct: 994 LDPDTVSYNLMINGLGKSRRLEEALSLFSEMK-NRGISPELYTYNALILHFGNAGMVDQA 1052
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ L G +P+ F YN +++G+
Sbjct: 1053 GKMFEELQFMGLEPNVFTYNALIRGH 1078
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I+TY ++ L + + Y + M G P++VTYT+LID +C L +A
Sbjct: 258 LRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDE-GCGPDVVTYTVLIDALCAAGKLDKA 316
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + S KPD Y T+M +
Sbjct: 317 KELYTKMRASSHKPDLVTYITLMSKF 342
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD+ +Y LV+CL + ++ ++++ + G+ P+ V+Y ++I+ + ++
Sbjct: 954 MIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLT-GLDPDTVSYNLMINGLGKSR 1012
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L EA+ L S + + G P+ + YN ++
Sbjct: 1013 RLEEALSLFSEMKNRGISPELYTYNALI 1040
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LC L +MRAS KP+LVTY L+ N +L R
Sbjct: 295 PDVVTYTVLIDALCAAGKLDKAKELYTKMRAS-SHKPDLVTYITLMSKFGNYGDLETVKR 353
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
S + G+ PD Y +++
Sbjct: 354 FWSEMEADGYAPDVVTYTILVEA 376
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ L TV F +M A G P++VTYTIL++ +C + + +A
Sbjct: 330 PDLVTYITLMSKFGNYGDLETVKRFWSEMEAD-GYAPDVVTYTILVEALCKSGKVDQAFD 388
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G P+ YNT++ G
Sbjct: 389 MLDVMRVRGIVPNLHTYNTLISG 411
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P + TY+ L+ L + R T+ + +++M +LG++PN+ TYTI I +
Sbjct: 218 MISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEME-TLGLRPNIYTYTICIRVLGRAG 276
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ +A ++ + D G PD Y ++
Sbjct: 277 RIDDAYGILKTMEDEGCGPDVVTYTVLI 304
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + TYN L+ L K L + M+ S G PN VT+ L+D +C +
Sbjct: 572 KLAPTVVTYNILITGLGKEGKLLKALDLFGSMKES-GCPPNTVTFNALLDCLCKNDAVDL 630
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+++ ++ PD YNTI+ G
Sbjct: 631 ALKMFCRMTIMNCSPDVLTYNTIIYG 656
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++KC K + + +M S G +P+++ LID + + EA
Sbjct: 503 LSPDSVTYNMMMKCYSKAGQIDKATKLLTEM-LSEGCEPDIIVVNSLIDTLYKAGRVDEA 561
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ L D P YN ++ G
Sbjct: 562 WQMFGRLKDLKLAPTVVTYNILITG 586
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFTYN L+ K + + ++ ++M G KPN++T+ I+I + + ++ +A+
Sbjct: 821 PNIFTYNLLLDAHGKSKRIDELFELYNEMLCR-GCKPNIITHNIIISALVKSNSINKALD 879
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + F P Y ++ G
Sbjct: 880 LYYEIISGDFSPTPCTYGPLIGG 902
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I T+N ++ L K S+ + ++ S P TY LI + EAM+
Sbjct: 856 PNIITHNIIISALVKSNSINKALDLYYEI-ISGDFSPTPCTYGPLIGGLLKAGRSEEAMK 914
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D KP+C +YN ++ G+
Sbjct: 915 IFEEMPDYQCKPNCAIYNILINGF 938
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++P P+ YN L+ K ++ + +M GI+P+L +YTIL++ +
Sbjct: 915 IFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKE-GIRPDLKSYTILVECL 973
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
T + +A+ L +G PD YN ++ G
Sbjct: 974 FMTGRVDDAVHYFEELKLTGLDPDTVSYNLMING 1007
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI N L+ L K + + +++ L + P +VTY ILI + L +A+
Sbjct: 540 PDIIVVNSLIDTLYKAGRVDEAWQMFGRLK-DLKLAPTVVTYNILITGLGKEGKLLKALD 598
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ +SG P+ +N ++
Sbjct: 599 LFGSMKESGCPPNTVTFNALL 619
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
L++ LCK + D+ SLG P +Y L+D + A++L + ++
Sbjct: 758 LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNA 817
Query: 76 GFKPDCFVYNTIMKGY 91
G P+ F YN ++ +
Sbjct: 818 GCCPNIFTYNLLLDAH 833
>gi|225183119|emb|CAR70092.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 334
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+++YN L+ C C+ L + +M LG +P++VT L++ C+ + +A+ L
Sbjct: 223 DLYSYNILINCFCRRSQLPLALAVLGKM-MKLGYEPDIVTLNSLLNGFCHGNRISDAVAL 281
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + + G+KPD +NT++ G
Sbjct: 282 VDQMVEMGYKPDTVTFNTLIHG 303
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P + +TY+ L+ C C+ L + +M LG +PN+VT + L++ C+ K + EA
Sbjct: 112 IPHNHYTYSILLNCFCRRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHGKRISEA 170
Query: 66 MRLV 69
+ LV
Sbjct: 171 VALV 174
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + +QM+ +LGI N TY+IL++ C L A+
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILLNCFCRRSQLPLALA 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++P+ ++++ GY
Sbjct: 138 VLGKMMKLGYEPNIVTLSSLLNGY 161
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K V + ++M+ +L I +L +Y ILI+ C L A+
Sbjct: 187 PSIVEFNKLLSAIAKMNKFDLVISLGERMQ-NLRISYDLYSYNILINCFCRRSQLPLALA 245
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++PD N+++ G+
Sbjct: 246 VLGKMMKLGYEPDIVTLNSLLNGF 269
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI T N L+ C ++ VDQM +G KP+ VT+ LI + EA+
Sbjct: 257 PDIVTLNSLLNGFCHGNRISDAVALVDQM-VEMGYKPDTVTFNTLIHGLFLHNKASEAVA 315
Query: 68 LV 69
L+
Sbjct: 316 LM 317
>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
Length = 374
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN L LC+ L + M +G+ PN VTYT LI C ++ EA RL
Sbjct: 177 DIYTYNTLACGLCRVNRLDEAKTLLHIM-IEMGVVPNYVTYTTLISIHCKDGDMVEARRL 235
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+++ G P YN ++ GY
Sbjct: 236 FREMAEKGATPSVVTYNVMIHGY 258
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ CK + +M A G P++VTY ++I ++REA R
Sbjct: 211 PNYVTYTTLISIHCKDGDMVEARRLFREM-AEKGATPSVVTYNVMIHGYAKKGSIREAER 269
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ GF PD + Y +++ G+
Sbjct: 270 FRKEMEKKGFVPDVYTYASLVHGH 293
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD++TY LV C + ++M+ G +PN+V YT LI +
Sbjct: 277 KGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQR-GTEPNVVAYTALISGLAKEGRSE 335
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A +L + +G PD +Y+ ++
Sbjct: 336 AAFQLYDDMLKAGLIPDDSLYSALV 360
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ CK + + M+ G+ N + + +ID C + +A++
Sbjct: 106 PNERTYGVLINGFCKIGQMEAAEMLLADMQGQ-GVGLNQIIFNTMIDGYCRKGMVDDALK 164
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ G + D + YNT+ G
Sbjct: 165 IKAAMEKMGVELDIYTYNTLACG 187
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G++PN TY +LI+ C + A L++ + G + ++NT++ GY
Sbjct: 103 GVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGY 153
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN LV CK + D M +S PN+VTY LI +C + L +A
Sbjct: 408 PDVYTYNILVSGFCKAGNTDAACGVFDDMSSS-HCSPNVVTYGTLISGLCKRRQLTKASL 466
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G PD FVY++++ G
Sbjct: 467 YFQHMKERGCPPDSFVYSSLVDG 489
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ Y+ L+ LCK R + + QM+ + P+ +TY ILID +C + ++
Sbjct: 334 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNILIDGLCKSGDVE 392
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + ++G KPD + YN ++ G+
Sbjct: 393 AARAFFDEMLEAGCKPDVYTYNILVSGF 420
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LCK + F D+M + G KP++ TY IL+ C N A
Sbjct: 373 PDTITYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPDVYTYNILVSGFCKAGNTDAACG 431
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +S S P+ Y T++ G
Sbjct: 432 VFDDMSSSHCSPNVVTYGTLISG 454
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TY +V L K + + ++++ A+ G P + TY L++ +C L EA+ L
Sbjct: 164 DIHTYTAIVDWLAKNKKIQDAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDL 222
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + D+G PD Y +++ G
Sbjct: 223 LRKIVDNGCTPDVVTYTSLIDG 244
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + ++ LCK + M A G+ PN V Y+ LI +C + + A+
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALE 361
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + + PD YN ++ G
Sbjct: 362 MLAQMKKAFCTPDTITYNILIDG 384
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK L + + ++ + G P++VTYT LID + K EA +
Sbjct: 198 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYTSLIDGLGKEKRSFEAYK 256
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ G D Y +++G
Sbjct: 257 LFKEMALRGLVLDTVCYTALIRG 279
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD F Y+ LV LCK L D+M S G+ N T T LI ++C + EA+
Sbjct: 477 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERS-GVA-NSQTRTRLIFHLCKANRVDEAV 534
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L +A+ G P + YN+I+
Sbjct: 535 SLFNAIRKEGM-PHPYAYNSII 555
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+N L+ C R + + +M G+ P+L T+ +++ +C + + AM
Sbjct: 92 PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ +G D Y I+
Sbjct: 152 HFETTTTNGCTIDIHTYTAIV 172
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y L++ L + + + M S G P++VT + +ID +C + A+R+
Sbjct: 269 DTVCYTALIRGLLQAGKIPQASSVYKTM-TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRI 327
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ G P+ VY+ ++ G
Sbjct: 328 FKSMEARGLAPNEVVYSALIHG 349
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+N ++ LCK + + + + G ++ TYT ++D + K +++A+
Sbjct: 128 PSLKTHNLVLHGLCKSGKVLAAMDHFETTTTN-GCTIDIHTYTAIVDWLAKNKKIQDAVA 186
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G P YN ++ G
Sbjct: 187 LMEKITANGCTPTIATYNALLNG 209
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ L N ++M+ G +PN+ TYT+LID +C + EA +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEK-GCEPNVHTYTVLIDGLCKENKMDEARK 355
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++S +S+ G P YN ++ GY
Sbjct: 356 MLSEMSEKGLIPSVVTYNALIDGY 379
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +TYN L++ LCK + + + V +M ++G+KP +VTYTILI + A++
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKM-LTMGVKPTVVTYTILIGEMLKDGAFDHALK 600
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G++PD Y + Y
Sbjct: 601 VFNHMVSLGYQPDVCTYTAFLHAY 624
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P + TYN L+ CK L + Y + M + G+ P+ TY++ ID +C
Sbjct: 430 MLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNEN-GLVPDQWTYSVFIDTLCKEG 488
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L ++ G K + +Y ++ GY
Sbjct: 489 RVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LCK R + +++M + P+L+TY LI C +L A R
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKM-LERKLSPSLITYNSLIHGQCKVNDLESAYR 460
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S ++++G PD + Y+ +
Sbjct: 461 LLSLMNENGLVPDQWTYSVFI 481
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY+ + LCK + D ++A G+K N V YT LID C + A
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAK-GVKANEVIYTALIDGYCKVGKIDVA 528
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + + P+ + YN +++G
Sbjct: 529 YSLLERMLNDACLPNSYTYNVLIEG 553
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P + TYN L+ CK + + +D M ++ PN TY LI +C + +
Sbjct: 363 KGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN-SCGPNTRTYNELICGLCKKRKVH 421
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L++ + + P YN+++ G
Sbjct: 422 KAMALLNKMLERKLSPSLITYNSLIHG 448
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TY L+ LCK + + +M + G+ P++VTY LID C +
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM-SEKGLIPSVVTYNALIDGYCKEGMID 386
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A ++ + + P+ YN ++ G
Sbjct: 387 DAFEILDLMESNSCGPNTRTYNELICG 413
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY + L V + + +M GI P+LVTYT+LID A
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEE-GILPDLVTYTVLIDGYARLGLTHRAFD 670
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + D+G KP ++ + ++K
Sbjct: 671 FLKCMVDTGCKPSLYIVSILIK 692
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL------GIKPNLVTYTILIDNVCN 58
+ P + YN ++ L K + +D+M+ I PN+ T+ +++ C
Sbjct: 154 KFKPTLRCYNTILMSLSK-------FLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCK 206
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ EA S + +G PD F Y +++ G+
Sbjct: 207 IGNVVEAELYASKIVQAGLHPDTFTYTSLILGH 239
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ C+ + + Y V + G + N V+YT LI +C + EA
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYE-VFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEA 283
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++L + +++ P Y ++
Sbjct: 284 LKLFADMTEDNCCPTVRTYTVLI 306
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ + K + + M SLG +P++ TYT + + L E
Sbjct: 577 PTVVTYTILIGEMLKDGAFDHALKVFNHM-VSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ +++ G PD Y ++ GY
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGY 659
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ Q+ P+I+T+N +V CK ++ + ++ G+ P+ TYT LI C K
Sbjct: 185 LLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKI-VQAGLHPDTFTYTSLILGHCRNK 243
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + G + + Y ++ G
Sbjct: 244 GVDNAYEVFLIMPQKGCQRNEVSYTNLIHG 273
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ Y L+ C+ L V M+ G+ P+ Y L+D C EA+RL
Sbjct: 747 DVSIYGALIAGFCQQERLEEAQGLVHHMKER-GMSPSEDIYNSLLDCCCKLGVYAEAVRL 805
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V A+ ++G P Y ++ G
Sbjct: 806 VDAMVENGLLPLLESYKLLVCG 827
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ TYN L+ C+ L + Y + M+ G+ P+ TY ID +C +
Sbjct: 318 MLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKER-GLVPDQRTYGCFIDFLCKSN 376
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +L++ G + +Y+ ++ GY
Sbjct: 377 RVEEARRLFDSLTEEGVSANVIMYSVLIDGY 407
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ +T+N L+ LC +L + DQM +G+KP + T+ ILI +
Sbjct: 423 MLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQM-VKMGLKPTVYTFNILIGRMLKQG 481
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A + + + SG KP YN ++ Y
Sbjct: 482 DFDDAHKCLQKMMSSGEKPVARTYNAFIEVY 512
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P ++T+N L+ + K + + +M +S G KP TY I+ C+ ++EA
Sbjct: 463 LKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSS-GEKPVARTYNAFIEVYCSAGKVQEA 521
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + G PD F Y +++K Y
Sbjct: 522 EDMMVQMKEEGVPPDDFTYTSLIKAY 547
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY L+K LC+ +++ +D+M + P+L+TY LI C +L A R
Sbjct: 291 PNVYTYTALIKGLCR-KNVHKAMGLLDEMLER-NLVPDLITYNSLIAGQCRAGHLDSAYR 348
Query: 68 LVSALSDSGFKPDCFVYN 85
L+S + + G PD Y
Sbjct: 349 LLSLMKERGLVPDQRTYG 366
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F+++P + +YN L+ LC+ + + +M+ PN+ TYT LI +C K
Sbjct: 249 VFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDC-CYPNVYTYTALIKGLCR-K 306
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +AM L+ + + PD YN+++ G
Sbjct: 307 NVHKAMGLLDEMLERNLVPDLITYNSLIAG 336
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD TY + LCK + D + G+ N++ Y++LID C +
Sbjct: 356 RGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEE-GVSANVIMYSVLIDGYCKVGKVD 414
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + P+ + +N ++ G
Sbjct: 415 EAGCLFEKMLSKNCSPNAYTFNALIHG 441
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L + + ++ Y+ L+ CK + ++M S PN T+ LI +C+
Sbjct: 388 LTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKM-LSKNCSPNAYTFNALIHGLCSAG 446
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
NL+EA+ L + G KP + +N ++
Sbjct: 447 NLKEALSLFDQMVKMGLKPTVYTFNILI 474
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ +CK +L +DQM+ GI P+ + + +I C + EA
Sbjct: 634 PDSKCYEKLISGICKVENLGIALKLLDQMQKE-GISPSEMVFNAVISCCCKLQKYGEAAN 692
Query: 68 LVSALSDSGFKP 79
+V + SG P
Sbjct: 693 IVEDMICSGHSP 704
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFTY LV LCK + + +D M G +PN + Y LID C L EA
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVE-GCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +S+ G+ P+ + Y++++
Sbjct: 693 VFTKMSERGYGPNVYTYSSLI 713
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L+ CK L + D+M G PN+VTYT LI + + A
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLKARKMSSANE 571
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G P+ Y ++ G+
Sbjct: 572 LFEMMLSEGCIPNVVTYTALIDGH 595
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY+ L+ L K + L + +M + PN++ YT +ID +C EA R
Sbjct: 704 PNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN-SCAPNVIIYTEMIDGLCKVGKTDEAYR 762
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + + G P+ Y ++ G+
Sbjct: 763 LMSMMEEKGCHPNVVTYTAMIDGF 786
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD TY+ ++ LC + + ++M+++ + P++ TYTILID+ C
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVG 529
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A + + G P+ Y ++ Y
Sbjct: 530 LLQQARKWFDEMVRDGCAPNVVTYTALIHAY 560
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI---------------KPNLVTYTIL 52
P++ TY L+ CK + +MR + I PN+ TY L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+D +C ++EA L+ +S G +P+ VY+ ++ G+
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ K R +++ N + +M S G PN+VTYT LID C + + +A +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSA-NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQ 606
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + + PD +Y I G
Sbjct: 607 IYARMRGNADIPDVDMYFKIDDG 629
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y ++ LC+ +F+ +MR+S I PN+VTY IL+ + L R+
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCI-PNVVTYRILLCGCLRKRQLGRCKRI 356
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+S + G P ++N+++ Y
Sbjct: 357 LSMMITEGCYPSRRIFNSLIHAY 379
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y ++ LCK Y + M G PN+VTYT +ID + + +
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK-GCHPNVVTYTAMIDGFGKAGKVDKCLE 797
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G P+ Y ++
Sbjct: 798 LMRQMGAKGCAPNFVTYRVLI 818
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y+ L+ CK L +M + G PN+ TY+ LID + K L A++
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKM-SERGYGPNVYTYSSLIDRLFKDKRLDLALK 727
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++S + ++ P+ +Y ++ G
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDG 750
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY ++ K + + QM A G PN VTY +LI++ C L +A +
Sbjct: 774 PNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK-GCAPNFVTYRVLINHCCAAGLLDDAHQ 832
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + + Y +++G+
Sbjct: 833 LLDEMKQTYWPKHMAGYRKVIEGF 856
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TYN ++ + + + + +M+ I+P +VTYT LI + +
Sbjct: 179 REISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGR-NIEPTVVTYTTLIKGYVSVDQVD 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+RLV + SG KP+ Y+T++ G
Sbjct: 238 DALRLVEEMKGSGIKPNAITYSTLLPG 264
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + TY L+K + V++M+ S GIKPN +TY+ L+ +CN + +
Sbjct: 214 RNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGS-GIKPNAITYSTLLPGLCNAEKMS 272
Query: 64 EAMRLVSALSDSGFKP 79
EA ++ + D P
Sbjct: 273 EARVILKEMMDKYLAP 288
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P T+N ++ + T F + M+ S I P++VTY +I+ K
Sbjct: 141 MLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK-SREISPDVVTYNTMINGYYRVK 199
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + + +P Y T++KGY
Sbjct: 200 KMEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PP++ T+N L+ LCK + + +MR + G P+++TY LID +C + +
Sbjct: 283 RNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRET-GCAPDIITYNSLIDGLCKSFQVD 341
Query: 64 EAMRLVSALSDSGFK-PDCFVYNTIMKGY 91
EA +L + +SG + Y+T+ GY
Sbjct: 342 EAFQLFQTIPESGVSAANAVTYSTLFHGY 370
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ ++ LCK + Y Q+ PN+VT+ ILID +C K + EA +
Sbjct: 252 PNVVTYSTVINGLCKQGQVDDAYELF-QLMERRNCPPNVVTHNILIDGLCKAKRIEEARQ 310
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++G PD YN+++ G
Sbjct: 311 LYHRMRETGCAPDIITYNSLIDG 333
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P + +N ++ CK + L + Y ++ M G PN+ T+TILI +C
Sbjct: 175 VIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVM-IEKGCVPNVFTFTILITGLCKAN 233
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA +L+ + G P+ Y+T++ G
Sbjct: 234 RVGEAQQLLEKMVTGGCSPNVVTYSTVING 263
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + + + S N VTY+ L + +A R
Sbjct: 322 PDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACR 381
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ S L D GF PD Y +++ Y
Sbjct: 382 IFSMLVDKGFSPDLATYTSLILEY 405
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TY LV LCK + +M A G P+ VT++ LID +C +
Sbjct: 72 KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIAR-GCAPDTVTFSTLIDGLCKFGSEE 130
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A R++ + G + TI++
Sbjct: 131 QAFRVLEDVIQRGMGNSDAAFETIIQ 156
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I T N ++ LC + Y V +M + LG P++ T LI C + A +
Sbjct: 571 PEISTVNVVISWLCSAAKVDDAYELVQRM-SKLGCCPDIETCNTLIGGYCKSGRADLARK 629
Query: 68 LVSALSDSGFKPD 80
L+ ++++G +P+
Sbjct: 630 LLEEMTEAGLEPN 642
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD T++ L+ LCK S + ++ + G+ + + +I +CN
Sbjct: 104 MIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDV-IQRGMGNSDAAFETIIQRLCNKY 162
Query: 61 NLRE-AMRLVSALSDSGFKPDCFVYNTIMKGY 91
N E A +++ + GF P ++N ++ G+
Sbjct: 163 NSVELASKVLGVVIAKGFTPTVLMFNLVINGF 194
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
PN TY ILI + +L A++L+ + +GF+ + V+ T+MKG
Sbjct: 7 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKG 53
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K PD+ TY L+ CK V V++M AS G P + T + ++ +
Sbjct: 386 LVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEM-ASKGFPPRVNTLSAVLGGLFEGN 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A++L +++ G D +YN +++G
Sbjct: 445 HTERAIQLFDSMAARGCTDDALIYNLVVEG 474
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY L++ L +++M+++ G + N V +T L+ +C+ + EA+
Sbjct: 7 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSN-GFEGNAVVHTTLMKGLCDAGRVVEALE 65
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
A++ PD Y ++
Sbjct: 66 HFRAMAKD-CAPDVMTYTALV 85
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ +YN L+ L + + + M S G P + T ++I +C+ + +A LV
Sbjct: 538 VSSYNGLLSGLSRLQRWDEATQVFEAM-VSAGPAPEISTVNVVISWLCSAAKVDDAYELV 596
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+S G PD NT++ GY
Sbjct: 597 QRMSKLGCCPDIETCNTLIGGY 618
>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT+N ++ C C + L +M S ++PN +T+TILID C + +AM
Sbjct: 655 PDVFTFNTMICCYCNFKRLDDAVQLFAKM-TSEQLRPNAITFTILIDAFCREGRMDDAML 713
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ S + + G +P+ Y+ ++ GY
Sbjct: 714 MFSKMLEEGPEPNLVTYSCLIHGY 737
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T++ L+ CK +L + D M A G+ P+L+ Y+ILID + L + R
Sbjct: 305 PNVVTFSTLIDAYCKEGNLDKAFVLFDVM-AGNGVTPDLIVYSILIDGLFKAGRLEDGQR 363
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ D G K D +++ M Y
Sbjct: 364 LLLVALDKGIKLDVVGFSSAMDAY 387
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++FT N L+ C+ + + V + L IK + VTYTILI +
Sbjct: 511 RGLSPNVFTLNTLLDSFCRLKCIVGAMK-VYYLMGMLNIKADTVTYTILIKGAAQFGRVD 569
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + FKPD Y T++ G
Sbjct: 570 EALMLFFQMLKKDFKPDVITYCTLIDG 596
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI T N ++K + + ++ + M +G KPN+VT++ LID C NL +A L
Sbjct: 271 DIITCNKILKGIWMQNDIGVADDYFN-MVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVL 329
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ +G PD VY+ ++ G
Sbjct: 330 FDVMAGNGVTPDLIVYSILIDG 351
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + P++ + + L+K C+ R L FV ++ LG +P+++TY+ LI C + NL
Sbjct: 406 EGISPNVVSCSILIKGFCQNGRILEACGLFVQILK--LGFEPSILTYSALIAGFCKSGNL 463
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R+ L + +PD VY+ ++ G
Sbjct: 464 RDGFYLYEDMIKKRCEPDTIVYSVLING 491
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSL-TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ TY+ L+ K +S+ + ++M + I PN+V+Y+ILID +C ++EA
Sbjct: 725 PNLVTYSCLIHGYFKSQSMMESGLKLYNEMLEN-NIAPNIVSYSILIDGLCKRGLMKEAS 783
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
D PD Y +++GY
Sbjct: 784 CAFRCALDKHLLPDVIAYTILIRGY 808
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TY+ L+ CK +L + + M +P+ + Y++LI+ +C + +A+R
Sbjct: 445 PSILTYSALIAGFCKSGNLRDGFYLYEDMIKKR-CEPDTIVYSVLINGLCKQGLVGDALR 503
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G P+ F NT++ +
Sbjct: 504 FFFQAVNRGLSPNVFTLNTLLDSF 527
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+ PD Y+ L+ LCK + F Q + G+ PN+ T L+D+ C K
Sbjct: 473 MIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQ-AVNRGLSPNVFTLNTLLDSFCRLK 531
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ AM++ + K D Y ++KG
Sbjct: 532 CIVGAMKVYYLMGMLNIKADTVTYTILIKG 561
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+I +Y+ L+ LCK R L + + + P+++ YTILI C L EA
Sbjct: 759 IAPNIVSYSILIDGLCK-RGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEA 817
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
M L + + PD F+ T+
Sbjct: 818 MMLYDNMLLNRLTPDRFLERTL 839
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ ++ + K L V +M GI PN+V+ +ILI C +
Sbjct: 371 KGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNE-GISPNVVSCSILIKGFCQNGRIL 429
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + GF+P Y+ ++ G+
Sbjct: 430 EACGLFVQILKLGFEPSILTYSALIAGF 457
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+QL P+ T+ L+ C+ + +M G +PNLVTY+ LI ++++
Sbjct: 686 EQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEE-GPEPNLVTYSCLIHGYFKSQSMM 744
Query: 64 EA-MRLVSALSDSGFKPDCFVYNTIMKG 90
E+ ++L + + ++ P+ Y+ ++ G
Sbjct: 745 ESGLKLYNEMLENNIAPNIVSYSILIDG 772
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI YN L+ + L + G KP++ T+ +I CN K L +A
Sbjct: 618 VAPDIAIYNVLINMHSREGHLEAALGLFVHV-VERGPKPDVFTFNTMICCYCNFKRLDDA 676
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L + ++ +P+ + ++ +
Sbjct: 677 VQLFAKMTSEQLRPNAITFTILIDAF 702
>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
Length = 1014
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F YN L+ LCK +M A G++PN VTY ILI +C + +A+
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAILIHALCKRGMIEDALC 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + D G K + YN+++ GY
Sbjct: 395 LFDKMRDKGIKVTVYPYNSLINGY 418
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T+ L+ CK + + D+M S + PN VT+ ++I+ C N+R+A +L
Sbjct: 479 YTFTALINGFCKDKKMDEAARLFDKMIDS-NVIPNEVTFNVMIEGYCLVGNIRKAFQLYD 537
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G KPD + Y +++ G
Sbjct: 538 QMVEMGLKPDNYTYRSLISG 557
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I ++N L+K LCK + + + ++ S G P+ ++Y+ +I +C ++ +A L
Sbjct: 757 IVSFNILIKGLCKAGKIQEAIDLMRKITES-GFSPDCISYSTIIHELCKMGDINKAFELW 815
Query: 70 SALSDSGFKPDCFVYNTIMK 89
+ + G KPD YN ++
Sbjct: 816 NEMLYKGLKPDVVAYNIFIR 835
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTYN + + + M G ++V++ ILI +C ++EA+
Sbjct: 721 PNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ--GHLASIVSFNILIKGLCKAGKIQEAID 778
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ +++SGF PDC Y+TI+
Sbjct: 779 LMRKITESGFSPDCISYSTII 799
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P DIF Y ++ L K ++ N DQM G PN VT+T+LI+N+C + L A
Sbjct: 651 PDDIF-YTCMIDALSKEENMIQALNCWDQMVID-GYSPNTVTHTVLINNLCKSGYLGSAE 708
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L + P+ F YN +
Sbjct: 709 LLCKEMLAGNVLPNKFTYNCFL 730
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY L+ LCK + D+MR GIK + Y LI+ C +L
Sbjct: 367 RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDK-GIKVTVYPYNSLINGYCKQGSLD 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+S + G P Y+ ++ G
Sbjct: 426 RARGLLSGMVKEGLTPTAASYSPLIAG 452
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ T+N +++ C ++ + DQM +G+KP+ TY LI +C T
Sbjct: 504 MIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM-VEMGLKPDNYTYRSLISGLCLTS 562
Query: 61 NLREAMRLVSALSDS 75
+ +A V+ L +S
Sbjct: 563 GVSKANEFVADLENS 577
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV C+ L M LG P+ + +ID + + + EA L
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDM-IRLGFVPSEANCSFMIDELRKKELVEEAFSL 325
Query: 69 VSALSDSGFKPDCFVYNTIM 88
L D G P+ F YN ++
Sbjct: 326 ACKLGDLGMVPNVFAYNALI 345
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE-AM 66
PD +Y+ ++ LCK + + ++M G+KP++V Y I I CN + A+
Sbjct: 790 PDCISYSTIIHELCKMGDINKAFELWNEMLYK-GLKPDVVAYNIFI-RWCNVHGESDKAL 847
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + + SG +P+ Y ++ G
Sbjct: 848 GIYTNMIRSGVQPNWDTYRALLSG 871
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
LG+ PN+ Y LID +C + +A RL ++ G +P+ Y ++
Sbjct: 332 LGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILI 380
Score = 34.3 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T + ++ L K R + D+M S G+ + YT I C ++NL A LV
Sbjct: 164 YTASQILFSLVKIRQFALARDLFDKMLQS-GVHLDEYVYTAGIRAYCESRNLDGARGLVV 222
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G K YN +M G
Sbjct: 223 RMESEGVKASAVPYNVLMYG 242
>gi|413923869|gb|AFW63801.1| hypothetical protein ZEAMMB73_133996 [Zea mays]
Length = 485
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ TYN ++ LCK ++T + MR S G+ P++ T ILID +C L+
Sbjct: 165 RGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQS-GLVPDIYTSNILIDGLCREGKLK 223
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD YNTI+ Y
Sbjct: 224 MVDNLLLDMCSNGLTPDTVTYNTIINAY 251
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI+T N L+ LC+ L V N + M S G+ P+ VTY +I+ C +++ A
Sbjct: 202 LVPDIYTSNILIDGLCREGKLKMVDNLLLDM-CSNGLTPDTVTYNTIINAYCRAQDMNSA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
M ++ + +G +PD F YN M
Sbjct: 261 MNFMNKMLVAGCEPDIFTYNIWMH 284
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ C+ + + + NF+++M + G +P++ TY I + ++ L +A
Sbjct: 237 LTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVA-GCEPDIFTYNIWMHSLYRNHMLNQA 295
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L+ L P+ YNT+M G
Sbjct: 296 GKLLDELVVVDCSPNSVTYNTLMDG 320
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 6 LPPDIFTYNFLVKCLCK------------CRSLTTVYNFVDQMRASL---GIKPNLVTYT 50
L P T+N+L+ LC RS N Q A + GI PN +TY
Sbjct: 116 LTPSSSTFNYLIMGLCNQTDFIAFSAYINGRSRLDYVNEAYQAFAEMTSRGIVPNNITYN 175
Query: 51 ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+I +C N+ EA +L + SG PD + N ++ G
Sbjct: 176 SIISALCKAGNMTEAFKLEQNMRQSGLVPDIYTSNILIDG 215
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDIFTYN + L + L +D++ + PN VTY L+D +C + L AM
Sbjct: 273 EPDIFTYNIWMHSLYRNHMLNQAGKLLDEL-VVVDCSPNSVTYNTLMDGIC-SDVLDRAM 330
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L L FKP+ N + +
Sbjct: 331 ILTGRLIKMAFKPNTITLNVFLSHF 355
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+FTY+ L++C K + + D+M A G PN+VTY IL+D + R
Sbjct: 281 KGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQ-GCVPNIVTYNILLDCLERHGKTR 339
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA +L L G PD Y+ + +
Sbjct: 340 EAHKLYETLKQQGLAPDSITYSILER 365
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D+ YN + L K + ++ + + D+M+A+ G+ P++ TY I+I + +
Sbjct: 176 KGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKAN-GVAPDVFTYNIMISSFGRVGLVD 234
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A L + DS KPD YN+++
Sbjct: 235 KASELFEEMDDSSCKPDVITYNSMI 259
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN ++ + + ++M S KP+++TY +I+ + +L EA
Sbjct: 215 PDVFTYNIMISSFGRVGLVDKASELFEEMDDS-SCKPDVITYNSMINCLGKNGDLDEAHM 273
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G+ PD F Y+ +++ +
Sbjct: 274 LFKDMQEKGYDPDVFTYSILIECF 297
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ CL K L + M+ G P++ TY+ILI+ + + A
Sbjct: 250 PDVITYNSMINCLGKNGDLDEAHMLFKDMQEK-GYDPDVFTYSILIECFGKSNKVDMACS 308
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G P+ YN ++
Sbjct: 309 LFDEMIAQGCVPNIVTYNILL 329
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY L++ K T +F+++M S G NL+ Y +I+ + K + +A+
Sbjct: 8 PDAYTYTILIRMSGKAGKATKFVSFLEEM-VSKGCVLNLIAYNTVIEALGKNKMVDKAIF 66
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++S + +S +P+ F Y+ ++
Sbjct: 67 MLSKMIESDCQPNQFTYSIML 87
Score = 34.7 bits (78), Expect = 7.7, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y++LVK LCK + ++ +M +S K + + +++ +CN + EA+ L+ +
Sbjct: 115 YSYLVKALCKSGHASEAHSVFCRMWSSHE-KGDRDAFVSMLEALCNAEKTAEAIDLLHMM 173
Query: 73 SDSGFKPDCFVYNTI 87
+ G D +YN I
Sbjct: 174 PEKGITTDVGMYNII 188
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN L LC+ L + M +G+ PN VTYT LI C ++ EA RL
Sbjct: 386 DIYTYNTLACGLCRVNRLDEAKTLLHIM-IEMGVVPNYVTYTTLISIHCKDGDMVEARRL 444
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+++ G P YN ++ GY
Sbjct: 445 FREMAEKGATPSVVTYNVMIDGY 467
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ CK + +M A G P++VTY ++ID ++REA R
Sbjct: 420 PNYVTYTTLISIHCKDGDMVEARRLFREM-AEKGATPSVVTYNVMIDGYTKKGSIREAER 478
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ GF PD + Y +++ G+
Sbjct: 479 FRKEMEKKGFVPDVYTYASLVHGH 502
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++ Y ++ C+ ++ +D+ + G++PN TY +LI+ C + A L
Sbjct: 281 DVYLYTAVINAYCRAGNMRRAAKVLDECVGN-GVEPNERTYGVLINGFCKIGQMEAAEML 339
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ + G + ++NT++ GY
Sbjct: 340 LADMQGQGVGLNQIIFNTMIDGY 362
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY LV L R ++ V ++M+A+ + ++ YT +I+ C N+R A +++
Sbjct: 249 TYTILVDSLSTARDISKVEALFNEMKAN-NVVGDVYLYTAVINAYCRAGNMRRAAKVLDE 307
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+G +P+ Y ++ G+
Sbjct: 308 CVGNGVEPNERTYGVLINGF 327
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD++TY LV C + ++M+ G +PN+V YT LI +
Sbjct: 486 KGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQR-GTEPNVVAYTALISGLAKEGRSE 544
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A +L + +G PD +Y+ ++
Sbjct: 545 AAFQLYDDMLKAGLIPDDSLYSALV 569
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY L+ CK + + M+ G+ N + + +ID C + +A++
Sbjct: 315 PNERTYGVLINGFCKIGQMEAAEMLLADMQGQ-GVGLNQIIFNTMIDGYCRKGMVDDALK 373
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ G + D + YNT+ G
Sbjct: 374 IKAAMEKMGVELDIYTYNTLACG 396
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
YN L+ C + + V ++ M GI+ + TYTIL+D++ +++ + L + +
Sbjct: 215 YNSLLDCYVRQKDDGRVQEILEIMENE-GIEATVGTYTILVDSLSTARDISKVEALFNEM 273
Query: 73 SDSGFKPDCFVYNTIMKGY 91
+ D ++Y ++ Y
Sbjct: 274 KANNVVGDVYLYTAVINAY 292
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+FTY L+ C+ R+L + D+M G PN VTY+ LI+ +CN + EA
Sbjct: 229 LSPDVFTYTSLILGHCRNRNLDLAFGVFDRM-VKEGCDPNSVTYSTLINGLCNEGRVDEA 287
Query: 66 MRLVSALSDSGFKPDCFVY 84
+ ++ + + G +P + Y
Sbjct: 288 LDMLEEMIEKGIEPTVYTY 306
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TYN LV K L + + +M G+ PN V+YT LID + A+
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEM-VECGLNPNPVSYTALIDGHSKDGKVDIALS 534
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G P+ YN ++ G
Sbjct: 535 LLKRMEEMGCNPNVESYNAVING 557
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++K LC + ++M +G P +VTY LI+ N+ A RL+
Sbjct: 410 TYNEIIKGLCLGGDIEKAMVLFEKM-LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDL 468
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ ++G +PD + YN ++ G+
Sbjct: 469 MKENGCEPDEWTYNELVSGF 488
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P ++TY + LC V +M+ G +PN+ TYT LI +
Sbjct: 294 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKR-GCRPNVQTYTALISGLSRLG 352
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A+ L + G P+ YN ++
Sbjct: 353 KLEVAIGLYHKMLKEGLVPNTVTYNALI 380
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN ++ L K + D+M G+ PN++TYT LID +C + A +
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKM-VEQGLLPNVITYTTLIDGLCRNGRTQFAFK 604
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + P+ + Y++++ G
Sbjct: 605 IFHDMEKRKCLPNLYTYSSLIYG 627
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY+ L+ LC+ + +M G+ P+ VT+T LID + A
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAEILLKEMERK-GLAPDEVTFTSLIDGFVVLGRIDHAFL 674
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D G KP+ Y+ ++KG
Sbjct: 675 LLRRMVDMGCKPNYRTYSVLLKG 697
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TY L+ LC+ + M + PNL TY+ LI +C
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL-PNLYTYSSLIYGLCQEG 632
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ + G PD + +++ G+
Sbjct: 633 KADEAEILLKEMERKGLAPDEVTFTSLIDGF 663
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P+ TYN L+ LC +T M G N TY +I +C
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGH-GSLANTQTYNEIIKGLCLGG 422
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +AM L + G P YNT++ GY
Sbjct: 423 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 453
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ L + L +M G+ PN VTY LI+ +C A++
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKE-GLVPNTVTYNALINELCVGGRFSTALK 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + YN I+KG
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKG 417
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+++ N L+ L K + N QM S GI+P+L+T+ LI+ + +REA ++
Sbjct: 163 LYSCNTLLIQLAKFEMVEGARNLYKQMLNS-GIQPSLLTFNTLINILSKKGKVREAELIL 221
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
S + PD F Y +++ G+
Sbjct: 222 SQIFQYDLSPDVFTYTSLILGH 243
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ LC + + +++M GI+P + TYT+ I +C ++ EA+
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEM-IEKGIEPTVYTYTLPITALCAIEHEEEAIE 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV+ + G +P+ Y ++ G
Sbjct: 325 LVARMKKRGCRPNVQTYTALISG 347
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K + + Q+ + P++ TYT LI C +NL A
Sbjct: 194 IQPSLLTFNTLINILSKKGKVREAELILSQI-FQYDLSPDVFTYTSLILGHCRNRNLDLA 252
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ Y+T++ G
Sbjct: 253 FGVFDRMVKEGCDPNSVTYSTLING 277
>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
Length = 1003
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F YN L+ LCK +M A G++PN VTY ILI +C + +A+
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAILIHALCKRGMIEDALC 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + D G K + YN+++ GY
Sbjct: 395 LFDKMRDKGIKVTVYPYNSLINGY 418
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T+ L+ CK + + D+M S + PN VT+ ++I+ C N+R+A +L
Sbjct: 479 YTFTALINGFCKDKKMDEAARLFDKMIDS-NVIPNEVTFNVMIEGYCLVGNIRKAFQLYD 537
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G KPD + Y +++ G
Sbjct: 538 QMVEMGLKPDNYTYRSLISG 557
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTYN + + + M G ++V++ ILI +C ++EA+
Sbjct: 721 PNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ--GHLASIVSFNILIKGLCKAGKIQEAID 778
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S +++SGF PDC Y+TI+
Sbjct: 779 LMSKITESGFSPDCISYSTII 799
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I ++N L+K LCK + + + ++ S G P+ ++Y+ +I +C ++ +A L
Sbjct: 757 IVSFNILIKGLCKAGKIQEAIDLMSKITES-GFSPDCISYSTIIHELCKMGDINKAFELW 815
Query: 70 SALSDSGFKPDCFVYNTIMK 89
+ + G KPD YN ++
Sbjct: 816 NEMLYKGLKPDVVAYNIFIR 835
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P DIF Y ++ L K ++ N DQM G PN VT+T+LI+N+C + L A
Sbjct: 651 PDDIF-YTCMIDALSKEENMIQALNCWDQMVVD-GYSPNTVTHTVLINNLCKSGYLGSAE 708
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L + P+ F YN +
Sbjct: 709 LLCKEMLAGNVLPNKFTYNCFL 730
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY L+ LCK + D+MR GIK + Y LI+ C +L
Sbjct: 367 RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDK-GIKVTVYPYNSLINGYCKQGSLD 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+S + G P Y+ ++ G
Sbjct: 426 RARGLLSGMVKEGLTPTAASYSPLIAG 452
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ T+N +++ C ++ + DQM +G+KP+ TY LI +C T
Sbjct: 504 MIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM-VEMGLKPDNYTYRSLISGLCLTS 562
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A V+ L +S + F ++ G+
Sbjct: 563 GVSKANEFVADLENSYAVLNNFSLTALLYGF 593
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV C+ L M LG P+ + +ID + + + EA L
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDM-IRLGFVPSEANCSFMIDELRKKELVEEAFSL 325
Query: 69 VSALSDSGFKPDCFVYNTIM 88
L D G P+ F YN ++
Sbjct: 326 ACKLGDLGMVPNVFAYNALI 345
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE-AM 66
PD +Y+ ++ LCK + + ++M G+KP++V Y I I CN + A+
Sbjct: 790 PDCISYSTIIHELCKMGDINKAFELWNEMLYK-GLKPDVVAYNIFI-RWCNVHGESDKAL 847
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + + SG +P+ Y ++ G
Sbjct: 848 GIYTNMIRSGVQPNWDTYRALLSG 871
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
LG+ PN+ Y LID +C + +A RL ++ G +P+ Y ++
Sbjct: 332 LGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILI 380
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T + ++ L K R + D+M S G+ + YT I C ++NL A LV
Sbjct: 164 YTASQILFSLVKIRQFALARDLFDKMLQS-GVHLDEYVYTAGIRAYCESRNLDGARGLVV 222
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ G K YN +M G
Sbjct: 223 RMESEGVKASAVPYNVLMYG 242
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFTY LV LCK + + +D M G +PN + Y LID C L EA
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVE-GCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +S+ G+ P+ + Y++++
Sbjct: 693 VFTKMSERGYGPNVYTYSSLI 713
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L+ CK L + D+M G PN+VTYT LI + + A
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLKARKMSSANE 571
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G P+ Y ++ G+
Sbjct: 572 LFEMMLSEGCIPNVVTYTALIDGH 595
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY+ L+ L K + L + +M + PN++ YT +ID +C EA R
Sbjct: 704 PNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN-SCAPNVIIYTEMIDGLCKVGKTDEAYR 762
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + + G P+ Y ++ G+
Sbjct: 763 LMSMMEEKGCHPNVVTYTAMIDGF 786
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD TY+ ++ LC + + ++M+++ + P++ TYTILID+ C
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVG 529
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A + + G P+ Y ++ Y
Sbjct: 530 LLQQARKWFDEMVRDGCAPNVVTYTALIHAY 560
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI---------------KPNLVTYTIL 52
P++ TY L+ CK + +MR + I PN+ TY L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+D +C ++EA L+ +S G +P+ VY+ ++ G+
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ K R +++ N + +M S G PN+VTYT LID C + + +A +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSA-NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQ 606
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + + PD +Y I G
Sbjct: 607 IYARMRGNADIPDVDMYFKIDDG 629
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y ++ LC+ +F+ +MR+S I PN+VTY IL+ + L R+
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCI-PNVVTYRILLCGCLRKRQLGRCKRI 356
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+S + G P ++N+++ Y
Sbjct: 357 LSMMITEGCYPSRRIFNSLIHAY 379
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y ++ LCK Y + M G PN+VTYT +ID + + +
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK-GCHPNVVTYTAMIDGFGKAGKVDKCLE 797
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G P+ Y ++
Sbjct: 798 LMRQMGAKGCAPNFVTYRVLI 818
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y+ L+ CK L +M + G PN+ TY+ LID + K L A++
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKM-SERGYGPNVYTYSSLIDRLFKDKRLDLALK 727
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++S + ++ P+ +Y ++ G
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDG 750
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY ++ K + + QM A G PN VTY +LI++ C L +A +
Sbjct: 774 PNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK-GCAPNFVTYRVLINHCCAAGLLDDAHQ 832
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + + Y +++G+
Sbjct: 833 LLDEMKQTYWPKHMAGYRKVIEGF 856
>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
Length = 564
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ ++ CL K L Y +M G P+LVTY I+ID A++
Sbjct: 170 PDTFTYSIIIHCLGKAGKLNAAYKLFCEM-TDRGYAPSLVTYNIIIDLHAKAGKFDMALK 228
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L S L + G+ PD Y IM+
Sbjct: 229 LYSDLQEVGYAPDRVTYGIIME 250
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C + L + + M+ +G +P+ VTY LID AM
Sbjct: 100 PNVVTYNRLIHCYGRANDLDSSLKLFNVMQM-VGCEPDRVTYCTLIDLQAKAGFHDAAMD 158
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + +GF+PD F Y+ I+
Sbjct: 159 LYRQMQHAGFRPDTFTYSIII 179
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY ++ L + +S + N +D+M G +PN+VTY LI +L +++L
Sbjct: 66 DVHTYTTILGILGRAKSFDVLNNLLDEMIRE-GCEPNVVTYNRLIHCYGRANDLDSSLKL 124
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G +PD Y T++
Sbjct: 125 FNVMQMVGCEPDRVTYCTLI 144
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ K + QM+ + G +P+ TY+I+I + L A +
Sbjct: 135 PDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHA-GFRPDTFTYSIIIHCLGKAGKLNAAYK 193
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++D G+ P YN I+
Sbjct: 194 LFCEMTDRGYAPSLVTYNIII 214
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ ++ CL K L Y +M G P+LVTY I+ID A++
Sbjct: 170 PDTFTYSIIIHCLGKAGKLNAAYKLFCEM-TDRGYAPSLVTYNIIIDLHAKAGKFDMALK 228
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L S L + G+ PD Y IM+
Sbjct: 229 LYSDLQEVGYAPDRVTYGIIME 250
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C + L + + M+ +G +P+ VTY LID AM
Sbjct: 100 PNVVTYNRLIHCYGRANDLDSSLKLFNVMQM-VGCEPDRVTYCTLIDLQAKAGFHDAAME 158
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + +GF+PD F Y+ I+
Sbjct: 159 LYRQMQHAGFRPDTFTYSIII 179
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TY ++ L + +S + N +D+M G +PN+VTY LI +L +++L
Sbjct: 66 DVHTYTTILGILGRAKSFDVLNNLLDEMIRE-GCEPNVVTYNRLIHCYGRANDLDSSLKL 124
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G +PD Y T++
Sbjct: 125 FNVMQMVGCEPDRVTYCTLI 144
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ K QM+ + G +P+ TY+I+I + L A +
Sbjct: 135 PDRVTYCTLIDLQAKAGFHDAAMELYRQMQHA-GFRPDTFTYSIIIHCLGKAGKLNAAYK 193
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++D G+ P YN I+
Sbjct: 194 LFCEMTDRGYAPSLVTYNIII 214
>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
Length = 625
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +N ++ LCK + N D M +GI+PN TY LID C + EAM+L
Sbjct: 487 DTIFFNAIMGNLCKKGRVIEAKNLFDLM-VRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 545
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +G KP YNTI+ GY
Sbjct: 546 LGVMVFNGVKPSDVTYNTIINGY 568
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y LV C +M G++P++VTYT L+D +C EA +
Sbjct: 276 PDCIMYTSLVHGYCSSGKPKEAIGIFKKM-CRHGVEPDVVTYTALMDYLCKNGKSTEARK 334
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +L G KPD Y T++ GY
Sbjct: 335 IFDSLVKRGHKPDSTTYGTLLHGY 358
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ Y ++ L + L Y+ D M G P++VTY+ +I + T+ + +A
Sbjct: 205 PLDVVAYTTVINGLLREGQLDKAYSLFDAM-LDRGPSPDVVTYSSIISALSKTQAMDKAT 263
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +G PDC +Y +++ GY
Sbjct: 264 QVFTRMVKNGVMPDCIMYTSLVHGY 288
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILID 54
++ +++P PD+F+Y L+K LC ++ + + M G P ++V YT +I+
Sbjct: 157 IVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVIN 216
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ L +A L A+ D G PD Y++I+
Sbjct: 217 GLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSII 250
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ ++ L K +++ +M + G+ P+ + YT L+ C++ +EA+
Sbjct: 241 PDVVTYSSIISALSKTQAMDKATQVFTRMVKN-GVMPDCIMYTSLVHGYCSSGKPKEAIG 299
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +PD Y +M
Sbjct: 300 IFKKMCRHGVEPDVVTYTALM 320
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I + L+ LC C V +M GI + + + ++ N+C + EA
Sbjct: 449 LAPNIVVFTTLIHGLCTCDKWDKVEELAFEM-IDRGICLDTIFFNAIMGNLCKKGRVIEA 507
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + G +P+ YNT++ GY
Sbjct: 508 KNLFDLMVRIGIEPNTNTYNTLIDGY 533
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI Y ++ LC + + + ++ S G+ PN+V +T LI +C +
Sbjct: 414 LNPDIVNYGTVLDILCTAGRVDDALSQFNSLK-SEGLAPNIVVFTTLIHGLCTCDKWDKV 472
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + D G D +N IM
Sbjct: 473 EELAFEMIDRGICLDTIFFNAIM 495
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 20 LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD-SGFK 78
LC + V + LG KP+L +YTIL+ +C+ K ++A+ L+ ++D G
Sbjct: 145 LCTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRC 204
Query: 79 P-DCFVYNTIMKG 90
P D Y T++ G
Sbjct: 205 PLDVVAYTTVING 217
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PD+ TY L+ LCK T D + G KP+ TY L+
Sbjct: 300 IFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSL-VKRGHKPDSTTYGTLLHGY 358
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L E L+ + G + ++N IM Y
Sbjct: 359 ATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAY 393
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TYN L+ C + + M + G+KP+ VTY +I+ + +
Sbjct: 519 IEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFN-GVKPSDVTYNTIINGYSQNGRIEDG 577
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + G P Y +++G
Sbjct: 578 LTLLREMDGKGVNPGIVTYEMLLQG 602
>gi|440794290|gb|ELR15456.1| pentatricopeptide repeat domain/PPR repeatcontaining protein,
partial [Acanthamoeba castellanii str. Neff]
Length = 551
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN-TKNLRE 64
L PD+ Y +V CK LT + +MR G+KPN+ TY L+ N+C KNL++
Sbjct: 131 LKPDVVFYTAMVNVCCKRNDLTQALRVLAEMRNE-GVKPNIFTYASLV-NICEREKNLKK 188
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A+ L+ + D +P+ ++Y +++
Sbjct: 189 ALDLLEEMKDENIQPNVYIYTSLI 212
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-GIKPNLVTYTILIDNVCNTKNL 62
+++ P + TY L+K + S ++QM+A G+KP++V YT +++ C +L
Sbjct: 92 EKIKPTVVTYTNLLKYCERVESWHKAAEVLEQMKAEAPGLKPDVVFYTAMVNVCCKRNDL 151
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIM 88
+A+R+++ + + G KP+ F Y +++
Sbjct: 152 TQALRVLAEMRNEGVKPNIFTYASLV 177
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 38/84 (45%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+++ Y L+ K R L T D M I+PN T+ L++ ++L
Sbjct: 199 ENIQPNVYIYTSLINVCEKKRDLVTAMKLFDDMTRLYRIRPNTFTFNSLLNVCVEKRDLD 258
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
M +++ + P+ +N++
Sbjct: 259 RGMEVLALMRQHQVVPNTSTFNSL 282
>gi|42566234|ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01570
gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21 [Arabidopsis thaliana]
gi|24797024|gb|AAN64524.1| At4g01570/T15B16_21 [Arabidopsis thaliana]
gi|332656643|gb|AEE82043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 805
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
PDI TYN L+ LC K + V+ D+++ S G +P+ TY ILI C + + +
Sbjct: 287 PDICTYNSLIHVLCLFGKAKDALIVW---DELKVS-GHEPDNSTYRILIQGCCKSYRMDD 342
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
AMR+ + +GF PD VYN ++ G
Sbjct: 343 AMRIYGEMQYNGFVPDTIVYNCLLDG 368
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI YN L+ L K L D M+++ GI P++V+Y +I+ L+EA +
Sbjct: 699 DIVMYNTLINALGKATRLDEATQLFDHMKSN-GINPDVVSYNTMIEVNSKAGKLKEAYKY 757
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ A+ D+G P+ V +TI+
Sbjct: 758 LKAMLDAGCLPN-HVTDTIL 776
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L++ CK + +M+ + G P+ + Y L+D + + EA +
Sbjct: 322 PDNSTYRILIQGCCKSYRMDDAMRIYGEMQYN-GFVPDTIVYNCLLDGTLKARKVTEACQ 380
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G + C+ YN ++ G
Sbjct: 381 LFEKMVQEGVRASCWTYNILIDG 403
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TYN +++ L K +D++ G ++V Y LI+ + L EA +L
Sbjct: 664 DIATYNVIIQGLGKMGRADLASAVLDRLTKQGGYL-DIVMYNTLINALGKATRLDEATQL 722
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ +G PD YNT+++
Sbjct: 723 FDHMKSNGINPDVVSYNTMIE 743
>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
Length = 550
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP + TYN L+ LCK L NF DQM S P+++TY L+ +C + EA+
Sbjct: 372 PPTVVTYNILINGLCKYGLLDRAINFFDQM-VSHNCLPDIITYNTLLAALCKEGMVDEAL 430
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ +L+D+ P YN ++ G
Sbjct: 431 HLLHSLNDTRCSPGLITYNIVIDG 454
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + + + + + P L+TY I+ID + + +AM
Sbjct: 408 PDIITYNTLLAALCKEGMVDEALHLLHSLNDTR-CSPGLITYNIVIDGLAKKGCMEKAMG 466
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + GF PD + T+ G
Sbjct: 467 LYGEMIERGFAPDDITHRTLFWG 489
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PPD TYN +++C+ F DQ+R G L+TYT+LI+ VC +A
Sbjct: 232 PPDAITYNTILRCMFDHGGFDQAIGFWKDQLRK--GCPAYLITYTVLIELVCKHCGTVQA 289
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ ++ G PD YN+++
Sbjct: 290 MEVLEDMAIEGCYPDIVTYNSLV 312
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
L++ L K S + M S GI P+++TY +L+ +C L+ A+ L+ +S S
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGI-PDIITYNMLVGGLCKKGLLKTAIELLDEMSLS 229
Query: 76 GFKPDCFVYNTIMK 89
G PD YNTI++
Sbjct: 230 GCPPDAITYNTILR 243
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY L++ +CK ++ M A G P++VTY L++ C
Sbjct: 264 KGCPAYLITYTVLIELVCKHCGTVQAMEVLEDM-AIEGCYPDIVTYNSLVNYTCKQGKYE 322
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+ ++ L G P+ YNT++
Sbjct: 323 DTALIIYNLLSHGMGPNTVTYNTLLH 348
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 8 PDIFTYNFLVKCLCKCR----SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
PDI TYN LV CK + +YN + S G+ PN VTY L+ ++C
Sbjct: 303 PDIVTYNSLVNYTCKQGKYEDTALIIYNLL-----SHGMGPNTVTYNTLLHSLCTHGYWD 357
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
E ++ ++ + P YN ++ G
Sbjct: 358 EVDEILLIMNMTSQPPTVVTYNILING 384
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ Y+ L+ LCK R + + QM+ + P+ +TY ILID +C + ++
Sbjct: 436 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNILIDGLCKSGDVE 494
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + ++G KPD + YN ++ G+
Sbjct: 495 AARAFFDEMLEAGCKPDVYTYNILISGF 522
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ Y+ L+ LCK R + + QM+ + P+ +TY +LID +C + ++
Sbjct: 155 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNVLIDGLCKSGDVE 213
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + ++G KPD + YN ++ G+
Sbjct: 214 AARAFFDEMLEAGCKPDVYTYNILISGF 241
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LCK + F D+M + G KP++ TY ILI C N A
Sbjct: 475 PDTITYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPDVYTYNILISGFCKAGNTDAACG 533
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ +S S + Y ++ G
Sbjct: 534 VFDDMSSSRCSANVVTYGALISG 556
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L+ CK + + + Q G ++ TYT ++D + K + EA+
Sbjct: 229 PDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVA 288
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ ++ +G P YN ++ G
Sbjct: 289 LMEKITANGCTPTIATYNALLNG 311
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TY +V L K + + ++++ A+ G P + TY L++ +C L EA+ L
Sbjct: 266 DIHTYTAIVDWLAKNKKIEEAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDL 324
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + D+G PD Y +++ G
Sbjct: 325 LRKIVDNGCTPDVVTYTSLIDG 346
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ LCK + F D+M + G KP++ TY ILI C N A
Sbjct: 194 PDTITYNVLIDGLCKSGDVEAARAFFDEMLEA-GCKPDVYTYNILISGFCKAGNTDAASH 252
Query: 68 -LVSALSDSGFKPDCFVYNTIM 88
L + +G D Y I+
Sbjct: 253 SLAQETTINGCTIDIHTYTAIV 274
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + ++ L K + M A G+ PN V Y+ LI +C + + A+
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALE 182
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + + PD YN ++ G
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDG 205
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK L + + ++ + G P++VTYT LID + K EA +
Sbjct: 19 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYTSLIDGLGKEKRSFEAYK 77
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L ++ G D Y +++
Sbjct: 78 LFKEMALRGLALDTVCYTALIR 99
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK L + + ++ + G P++VTYT LID + K EA +
Sbjct: 300 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYTSLIDGLGKEKRSFEAYK 358
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L ++ G D Y +++
Sbjct: 359 LFKEMALRGLALDTVCYTALIR 380
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T + ++ L K + M A G+ PN V Y+ LI +C + + A+
Sbjct: 405 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALE 463
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+++ + + PD YN ++ G
Sbjct: 464 MLAQMKKAFCTPDTITYNILIDG 486
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G P + TY L++ +C L EA+ L+ + D+G PD Y +++ G
Sbjct: 16 GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 65
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ L K + Y +M A G+ + V YT LI + T + +A
Sbjct: 54 PDVVTYTSLIDGLGKEKRSFEAYKLFKEM-ALRGLALDTVCYTALIRELLQTGKIPQASS 112
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ G PD +T++ G
Sbjct: 113 VYKTMTSHGCVPDVVTLSTMIDG 135
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ L K + Y +M A G+ + V YT LI + T + +A
Sbjct: 335 PDVVTYTSLIDGLGKEKRSFEAYKLFKEM-ALRGLALDTVCYTALIRELLQTGKIPQASS 393
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ ++ G PD +T++ G
Sbjct: 394 VYKTMTSHGCVPDVVTLSTMIDG 416
>gi|302780409|ref|XP_002971979.1| hypothetical protein SELMODRAFT_59387 [Selaginella moellendorffii]
gi|300160278|gb|EFJ26896.1| hypothetical protein SELMODRAFT_59387 [Selaginella moellendorffii]
Length = 136
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ PD++TY LV CK + + + + +M A G +PN+VTYT LID C
Sbjct: 26 MVASDCSPDVYTYTSLVNGFCKVKRMVEAHRVLKRM-AKGGCQPNVVTYTALIDAFCRAG 84
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L+ + +G +P+ Y +++ G+
Sbjct: 85 KPMVAYKLLEEMVGNGVQPNFITYRSLIGGF 115
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ C+ Y +++M + G++PN +TY LI C T +L EA +
Sbjct: 68 PNVVTYTALIDAFCRAGKPMVAYKLLEEMVGN-GVQPNFITYRSLIGGFCGTGDLEEAHK 126
Query: 68 LVSALS 73
++ L
Sbjct: 127 MLKRLE 132
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ YN ++ L K L ++M+ S GI P+L TY LI N+ + EA
Sbjct: 994 LNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEA 1053
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +G +P+ F +N +++GY
Sbjct: 1054 GKIYNEIQRAGLEPNVFTFNALIRGY 1079
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ R L +V F +M G P++VT+TIL+D +C N EA
Sbjct: 328 PDRVTYITLLDRFSDNRDLDSVNQFWSEMEKD-GHVPDVVTFTILVDALCKAGNFGEAFA 386
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D G P+ YNT++ G
Sbjct: 387 KLDVMRDQGILPNLHTYNTLICG 409
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I+K++ P+ T+N ++ L K ++ + + + P TY LID +
Sbjct: 844 IYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGL 903
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L EA +L +SD G +P+C +YN ++ G+
Sbjct: 904 SKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGF 938
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I P + TY+ L+ L K R + +V + +M +LG+KPN+ T+TI I +
Sbjct: 216 MILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEME-TLGLKPNVYTFTICIRVLGRAG 274
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA ++ + D G PD Y ++
Sbjct: 275 KINEAYEILKRMDDEGCGPDVVTYTVLI 302
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ LV LCK + + +D MR GI PNL TY LI + L +A+
Sbjct: 363 PDVVTFTILVDALCKAGNFGEAFAKLDVMRDQ-GILPNLHTYNTLICGLLRVHRLDDALE 421
Query: 68 LVSALSDSGFKPDCFVY 84
+ + G KP + Y
Sbjct: 422 IFDNMESLGVKPTAYTY 438
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+++T+ ++ L + + Y + +M G P++VTYT+LID +C + L A
Sbjct: 256 LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE-GCGPDVVTYTVLIDALCTARKLDCA 314
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + + KPD Y T++
Sbjct: 315 KEVFAKMKTGRHKPDRVTYITLL 337
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + TYN L+ L K + + M G PN +T+ L D +C +
Sbjct: 570 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM-VQKGCPPNTITFNTLFDCLCKNDEVTL 628
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A++++ + D G PD F YNTI+ G
Sbjct: 629 ALKMLFKMMDMGCVPDVFTYNTIIFG 654
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ K +M G++P+L TY++L+D +C + E +
Sbjct: 926 PNCAIYNILINGFGKAGEADAACALFKRM-VKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 984
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +SG PD YN I+ G
Sbjct: 985 YFRELKESGLNPDVVCYNLIING 1007
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LC R L +M+ KP+ VTY L+D + ++L +
Sbjct: 293 PDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRH-KPDRVTYITLLDRFSDNRDLDSVNQ 351
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
S + G PD + ++
Sbjct: 352 FWSEMEKDGHVPDVVTFTILV 372
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 36/119 (30%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID------------- 54
P++ TYN L+ L + L D M SLG+KP TY + ID
Sbjct: 398 PNLHTYNTLICGLLRVHRLDDALEIFDNME-SLGVKPTAYTYIVFIDYYGKSGDSVSALE 456
Query: 55 ----------------------NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ REA ++ L D G PD YN +MK Y
Sbjct: 457 TFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 515
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++KC K + + +M + +P+++ LI+ + + EA
Sbjct: 501 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENC-CEPDVIVVNSLINTLYKADRVDEA 559
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + + KP YNT++ G
Sbjct: 560 WKMFMRMKEMKLKPTVVTYNTLLAG 584
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP+ T+N L CLCK +T + +M +G P++ TY +I +
Sbjct: 601 MVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM-MDMGCVPDVFTYNTIIFGLVKNG 659
Query: 61 NLREAM 66
++EAM
Sbjct: 660 QVKEAM 665
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
++YN L+ L K R T +M G +P+L TY+ L+ + +++ M L+
Sbjct: 191 YSYNGLIHLLLKSRFCTEAMEVYRRMILD-GFRPSLQTYSSLMVGLGKRRDIESVMGLLK 249
Query: 71 ALSDSGFKPDCFVY 84
+ G KP+ + +
Sbjct: 250 EMETLGLKPNVYTF 263
>gi|296083392|emb|CBI23347.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + PD+ T+N+LV LCK L N V +M +G PN T+ I C
Sbjct: 50 MIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREM-LEIGPSPNCATFNTFIKGYCLNN 108
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N+ +A+ L S +++SG P+ YN ++
Sbjct: 109 NVDKALYLFSTMANSGIGPNKVTYNILIH 137
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L+ C + + + Y + +M G+ P++ TY LI C NL EA +
Sbjct: 201 DVVAYNVLIHGFCLIQDMNSAYRYFCEMFKR-GLLPDIFTYNTLISGFCKIGNLDEACYI 259
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+S G PD Y I++G
Sbjct: 260 HGVMSKMGAAPDLISYKMIIQG 281
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PDIFTYN L+ CK +L ++ + + +G P+L++Y ++I +C ++
Sbjct: 231 RGLLPDIFTYNTLISGFCKIGNLDEAC-YIHGVMSKMGAAPDLISYKMIIQGLCIHGDVI 289
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + + ++ P+ ++N ++ G+
Sbjct: 290 RANQFLVCMLENLMVPEPLIWNVVIDGH 317
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G+ P+++T+ L++ +C +L +A LV + + G P+C +NT +KGY
Sbjct: 54 GVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGY 104
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 9 DIFTYN-FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
DI T F+ CL K + + ++ + ++ G + ++V Y +LI C +++ A R
Sbjct: 166 DIITSTIFMDGCLKKGDMVQALVHWDEMLQR--GTQIDVVAYNVLIHGFCLIQDMNSAYR 223
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ G PD F YNT++ G+
Sbjct: 224 YFCEMFKRGLLPDIFTYNTLISGF 247
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP++FTYN L+ K ++ ++ +M + GI P+ LI C ++ EA
Sbjct: 338 IPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLN-GIYPD------LIRGFCIRGHVMEA 390
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L++ L SG D + +++ Y
Sbjct: 391 EELLAKLQRSGLSIDHAPFQILIQKY 416
>gi|125569816|gb|EAZ11331.1| hypothetical protein OsJ_01195 [Oryza sativa Japonica Group]
Length = 943
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + D+ +Y ++ LC+ RS+ V F+D+M KPNL+TYT LI C
Sbjct: 118 MLDKGIAADVVSYTTVIDGLCRERSVEKVMGFLDEMNRR-DAKPNLITYTSLIGGFCKRN 176
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM-----KGY 91
L +A +V L +G D +VY+ ++ KGY
Sbjct: 177 RLDDAFSIVRKLEQTGVVVDEYVYSILIDNLCKKGY 212
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+I +N ++ LC+ LT + D + +S + P LVTY+ILI +C L
Sbjct: 603 EGIQPNIVIHNSVLNGLCQQGCLTEAFRLFDYLESS-EVLPTLVTYSILIAALCREGFLD 661
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L +S G KP VYN ++ GY
Sbjct: 662 DAHELFQKMSTKGIKPTTRVYNLLISGY 689
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P + TY+ L+ LC+ L + +M ++ GIKP Y +LI CN +
Sbjct: 639 EVLPTLVTYSILIAALCREGFLDDAHELFQKM-STKGIKPTTRVYNLLISGYCNYGLTEK 697
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ L+S + PD I+ G+
Sbjct: 698 ALELISHFEEIFLFPDAITIGAIINGH 724
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ Y+ LV+ LCK L + + M+ GI+PN+V + +++ +C L EA RL
Sbjct: 573 DLAMYSILVEGLCKSGYLEKALDLCESMKEE-GIQPNIVIHNSVLNGLCQQGCLTEAFRL 631
Query: 69 VSALSDSGFKPDCFVYNTIM 88
L S P Y+ ++
Sbjct: 632 FDYLESSEVLPTLVTYSILI 651
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + Y+ L+ LCK L ++ +++M GIK +VTY +I+ +C + ++A+ +
Sbjct: 196 DEYVYSILIDNLCKKGYLDRAFSLLEEMDKK-GIKIGIVTYNSVINGLCKVGHTKKAVEI 254
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
G D F Y+T++ G+
Sbjct: 255 Y-----EGIAADNFTYSTLLHGH 272
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 31 NFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NF+ + + G +L Y+IL++ +C + L +A+ L ++ + G +P+ ++N+++ G
Sbjct: 560 NFLKEAEQN-GYSVDLAMYSILVEGLCKSGYLEKALDLCESMKEEGIQPNIVIHNSVLNG 618
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ YN L+ LCK + + DQM LG+ + VTY LI+ +C +K + EA +L
Sbjct: 476 NVVVYNTLIDGLCKNNRVGDAEDIFDQMEM-LGVSRSSVTYNTLINGLCKSKRVEEAAQL 534
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ + G KPD F Y T++K
Sbjct: 535 MDQMIMEGLKPDKFTYTTMLK 555
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T+N L++ LC + ++M+ G P+ TY+ILI+++C+ +
Sbjct: 398 LTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEK-GCDPDEFTYSILIESLCSER 456
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L+EA+ L+ + SG + VYNT++ G
Sbjct: 457 RLKEALMLLKEMELSGCARNVVVYNTLIDG 486
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++TYN L+ LCK + + M S +PN VTY LI +C ++ A L
Sbjct: 336 DVYTYNSLISGLCKLGEIDEAVEILHHM-VSRDCEPNTVTYNTLIGTLCKENHVEAATEL 394
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
L+ G PD +N++++G
Sbjct: 395 ARVLTSKGVLPDVCTFNSLIQG 416
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LCK + + +DQM G+KP+ TYT ++ C +++ A +V
Sbjct: 514 TYNTLINGLCKSKRVEEAAQLMDQMIME-GLKPDKFTYTTMLKYFCQQGDIKRAADIVQN 572
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +G +PD Y T++ G
Sbjct: 573 MTLNGCEPDIVTYGTLIGG 591
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ TYN L+ LCK + ++ S G+ P++ T+ LI +C T
Sbjct: 363 MVSRDCEPNTVTYNTLIGTLCKENHVEAATELA-RVLTSKGVLPDVCTFNSLIQGLCLTS 421
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N AM L + + G PD F Y+ +++
Sbjct: 422 NREIAMELFEEMKEKGCDPDEFTYSILIE 450
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN + L K L V +M A + P++ T+ ILI +C LR A+
Sbjct: 162 PDTRFYNVALSLLVKANKLKLVETLHSKMVAD-AVPPDVSTFNILIRALCKAHQLRPAIL 220
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + + G +PD + T+M+G+
Sbjct: 221 MLEDMPNYGLRPDEKTFTTLMQGF 244
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY+ L++ LC R L + +M S G N+V Y LID +C + +A
Sbjct: 440 PDEFTYSILIESLCSERRLKEALMLLKEMELS-GCARNVVVYNTLIDGLCKNNRVGDAED 498
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G YNT++ G
Sbjct: 499 IFDQMEMLGVSRSSVTYNTLING 521
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +PPD+ T+N L++ LCK L ++ M + G++P+ T+T L+
Sbjct: 190 MVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDM-PNYGLRPDEKTFTTLMQGFIEEA 248
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ A+R+ + +SG + N ++ G
Sbjct: 249 DVEGALRIKELMVESGCELTSVSVNVLVNG 278
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N LV LCK + F+ + G P+ VT+ L++ +C T ++++ + ++
Sbjct: 271 SVNVLVNGLCKEGRIEEALRFIYEEE---GFCPDQVTFNALVNGLCRTGHIKQGLEMMDF 327
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ + GF+ D + YN+++ G
Sbjct: 328 MLEKGFELDVYTYNSLISG 346
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT---YTILIDNVCNTKNLRE 64
PDI TY L+ LCK + + ++ S+ +K ++T Y +I +C K +E
Sbjct: 580 PDIVTYGTLIGGLCKAGRV----DVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKE 635
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
AMRL + + G PD Y + +G
Sbjct: 636 AMRLFREMMEKGDPPDVITYKIVFRG 661
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N LV LC+ + +D M G + ++ TY LI +C + EA+
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEK-GFELDVYTYNSLISGLCKLGEIDEAVE 358
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + +P+ YNT++
Sbjct: 359 ILHHMVSRDCEPNTVTYNTLI 379
>gi|224160730|ref|XP_002338246.1| predicted protein [Populus trichocarpa]
gi|222871516|gb|EEF08647.1| predicted protein [Populus trichocarpa]
Length = 235
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L PD TY+ L++ LC+ N +M S G+ PNLVTY+IL+D +L
Sbjct: 39 KELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM-CSTGLLPNLVTYSILLDGFWKHGHLD 97
Query: 64 EAMRLVSALSDSGFKPD 80
EA++L+ ++ + +PD
Sbjct: 98 EALKLLQSMQEKKLEPD 114
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + +YN L+ C+ R + + + +M + + P+ VTY+ L+ +C
Sbjct: 1 MVRKGCGPVVHSYNILINGYCQSRMMDEAKSLLAEM-SEKELTPDTVTYSTLMQGLCQVG 59
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ L + +G P+ Y+ ++ G+
Sbjct: 60 RPQEALNLFKEMCSTGLLPNLVTYSILLDGF 90
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-------------------GIKPNL 46
L P++ TY+ L+ K L + M+ GI+P +
Sbjct: 76 LLPNLVTYSILLDGFWKHGHLDEALKLLQSMQEKKLEPDILEVAKELFSKLFVDGIRPTV 135
Query: 47 VTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
TY+++I + + EA RL + D GF PD YN I++G+
Sbjct: 136 HTYSVMIKGLLKERLSDEAYRLFRKMEDDGFMPDSCSYNVIIQGF 180
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ ++K L K R Y +M G P+ +Y ++I ++ A+R
Sbjct: 133 PTVHTYSVMIKGLLKERLSDEAYRLFRKMEDD-GFMPDSCSYNVIIQGFLQIRDSSTAVR 191
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + GF D + ++
Sbjct: 192 LIDEMVGKGFSADSTTFQMLL 212
>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
Length = 466
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 2 IFKQLP--PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+F+ +P PDIF+YN ++K LC+ + +M PN VT+ ILI+++C
Sbjct: 303 LFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGK-DCPPNEVTFNILINSLCQK 361
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A+ ++ + + G PD F YN ++ G+
Sbjct: 362 GLVDRAIEVLEQMPNYGSTPDIFTYNALINGF 393
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP+ T+N L+ LC+ + ++QM + G P++ TY LI+
Sbjct: 339 MVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQM-PNYGSTPDIFTYNALINGFSEQG 397
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L +A++L+S +S KPD YN+ +KG
Sbjct: 398 RLDDALKLLSTMS---CKPDAISYNSTLKG 424
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ T++ L+ LC+ + + ++QM G +P+ V Y I+I+++
Sbjct: 135 MVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQME-KYGCEPDTVNYNIIINSLSERG 193
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A+RL++++ KPD +N ++KG+
Sbjct: 194 RVDDALRLLNSMV---CKPDALGFNAVLKGF 221
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN +K LC + + +M G PN T+++LI ++C + A+
Sbjct: 107 PNTVCYNAALKGLCIAERWEDIGELMAEM-VRKGCSPNEATFSMLISSLCQNNLVDSAVE 165
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + G +PD YN I+
Sbjct: 166 VLEQMEKYGCEPDTVNYNIII 186
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TYN ++K LC + + +M + PN VT+ I + C L A++
Sbjct: 5 PDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNR-CPPNEVTFATQIRSFCQNGLLDRAVQ 63
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G PD +Y+T++ G+
Sbjct: 64 LLDQMPRYGCTPDVVIYSTLINGF 87
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I + PP+ T+ ++ C+ L +DQM G P++V Y+ LI+ +
Sbjct: 34 IRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQM-PRYGCTPDVVIYSTLINGFSEQGH 92
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ L++ + KP+ YN +KG
Sbjct: 93 VDQALDLLNTML---CKPNTVCYNAALKG 118
>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 589
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ TYN ++ C + + M G PNLVTY+ LI C TK
Sbjct: 308 MVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHK-GFLPNLVTYSSLIHGWCKTK 366
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+ +A+ L+ + +SG PD ++T++ G+
Sbjct: 367 NINKALFLLGEMVNSGLNPDVVTWSTLIGGF 397
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD++T ++ CLC TV+ F V + +G+ P +VT+ LI+ +C N+
Sbjct: 102 IKPDVYTLTIIINCLCHLNH--TVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVAR 159
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A R +L D G + + + Y I+ G
Sbjct: 160 AARFADSLEDMGHQSNSYTYGAIING 185
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 4 KQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K + PD+ YN L+ LC + + TT+ + MR GI PN+ T+ +L+DN C
Sbjct: 241 KGIQPDLVAYNSLIHGLCNFGRWKEATTLLG--NMMRK--GIMPNVQTFNVLVDNFCKDG 296
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A ++ + G +PD YN+++ G+
Sbjct: 297 MISRAKTIMGFMVHVGVEPDVVTYNSVISGH 327
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ T+N LV CK ++ + M +G++P++VTY +I C +
Sbjct: 276 KGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFM-VHVGVEPDVVTYNSVISGHCLLSQMG 334
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+++ + GF P+ Y++++ G+
Sbjct: 335 DAVKVFELMIHKGFLPNLVTYSSLIHGW 362
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 43/80 (53%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY ++ LCK + ++++++ ++ Y+ ++D++C + EA+ L S
Sbjct: 177 YTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFS 236
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
++ G +PD YN+++ G
Sbjct: 237 GMTSKGIQPDLVAYNSLIHG 256
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T ++ L KC+ + + +M + ++ N+V Y I++D +C+ L +A
Sbjct: 420 PNLQTCAIILDGLFKCQFHSEAISLFREME-KMNLELNVVIYNIVLDGMCSFGKLNDAQE 478
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L S L G K D Y T++KG
Sbjct: 479 LFSCLPSKGIKIDVVAYTTMIKG 501
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ Y+ ++ LCK + N M S GI+P+LV Y LI +CN +EA L+
Sbjct: 212 VIAYSTIMDSLCKDGMVCEALNLFSGM-TSKGIQPDLVAYNSLIHGLCNFGRWKEATTLL 270
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G P+ +N ++ +
Sbjct: 271 GNMMRKGIMPNVQTFNVLVDNF 292
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TY+ L+ CK +++ + +M S G+ P++VT++ LI C
Sbjct: 343 MIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNS-GLNPDVVTWSTLIGGFCKAG 401
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + P+ I+ G
Sbjct: 402 KPEAAKELFCTMHEHDQHPNLQTCAIILDG 431
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L ++ YN ++ +C L + S GIK ++V YT +I +C L +A
Sbjct: 453 LELNVVIYNIVLDGMCSFGKLNDAQELFSCL-PSKGIKIDVVAYTTMIKGLCKEGLLDDA 511
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + ++G P+ F YN ++G
Sbjct: 512 ENLLMKMEENGCLPNEFTYNVFVRG 536
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FT++ LV LCK + V+ M A G KPNL TYTILID C L EA
Sbjct: 380 PDVFTFSTLVNGLCKKGLFGSALELVNDMDAK-GCKPNLNTYTILIDGFCKKGQLEEAGL 438
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + GF + YN ++
Sbjct: 439 ILREMLTKGFSLNTVGYNALI 459
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P D TYN L+K LCK ++ ++M G+ P+++T ILI+ C
Sbjct: 548 MLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRK-GLTPSIITCNILINGFCTAG 606
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+ + + GF PD YN+++ G
Sbjct: 607 KVHNALEFMRDMIHRGFSPDIVTYNSLING 636
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L P I T N L+ C + F+ M G P++VTY LI+ +C
Sbjct: 583 MIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDM-IHRGFSPDIVTYNSLINGLCKRG 641
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++EA+ L L G +PD YNT++
Sbjct: 642 RIQEALNLFEKLQAEGIQPDSITYNTLI 669
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PDI TYN L+ LCK + N ++++A GI+P+ +TY LI +C
Sbjct: 618 MIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAE-GIQPDSITYNTLICWLCREG 676
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A L+ ++GF P+ +N ++
Sbjct: 677 AFDDACFLLYRGVENGFVPNDVTWNILV 704
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ T+N ++ C+ + VD+M G PN +TY L+ +C T + EA
Sbjct: 277 PPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILK-GFTPNDMTYGYLMHGLCKTCRIDEAQ 335
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L+S + P+ +NT++ G+
Sbjct: 336 ALLSKVPG----PNVVHFNTLVNGF 356
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGI--KPNLVTYTILIDNVC 57
+I K P+ TY +L+ LCK CR +D+ +A L PN+V + L++
Sbjct: 306 MILKGFTPNDMTYGYLMHGLCKTCR--------IDEAQALLSKVPGPNVVHFNTLVNGFV 357
Query: 58 NTKNLREAMRLV-SALSDSGFKPDCFVYNTIMKG 90
L EA V + ++G+ PD F ++T++ G
Sbjct: 358 RNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNG 391
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ +T+ ++K LC + + M G PN + Y LID +
Sbjct: 201 MLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKH-GCVPNSMIYQTLIDALSKRD 259
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA++L+ + G PD +NT++ G+
Sbjct: 260 RVDEALKLLEEMFLMGCPPDVNTFNTVIYGF 290
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDIFT+N L+ LC+ + M G+ N VT+ LI ++
Sbjct: 481 KGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLE-GVIANSVTFNTLIHAFLRRGEIQ 539
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA++LV+ + G D YN ++K
Sbjct: 540 EALKLVNDMLFRGCPLDEITYNGLIK 565
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK S+ + ++MR LG+ PN+ YT L+D +C L EA++
Sbjct: 501 PNVITYCALIDGLCKAGSIDEAISHFNKMR-DLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G D VY ++ GY
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGY 583
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+ C CK + T Y + M+ G+ N+VT++ +D C +REAM+L
Sbjct: 257 DVVTYNALINCFCKFGRMETAYGYFAAMKRE-GVMANVVTFSTFVDAFCKEGLVREAMKL 315
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G + F Y ++ G
Sbjct: 316 FAQMRVRGMALNEFTYTCLIDG 337
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 2 IFKQLP-PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F+QLP P++FT+N ++ LCK L + +M+ +G P++VT+ LID
Sbjct: 179 LFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMK-EMGCLPDVVTFNSLIDGYGKCG 237
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L E +LV + SG K D YN ++ +
Sbjct: 238 ELDEVEQLVEEMRRSGCKADVVTYNALINCF 268
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L DI Y L++ LC L + + +M S G++PN + YT ++D + +
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES-GLEPNYIIYTTMMDACFKSGKVP 485
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ ++ + DSGF+P+ Y ++ G
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDG 512
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++PP+ T N ++ L + RS V +Q+ A PN+ T+ I+ID +C L E
Sbjct: 152 RVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA-----PNVFTFNIVIDFLCKEGELAE 206
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L S + + G PD +N+++ GY
Sbjct: 207 ARSLFSRMKEMGCLPDVVTFNSLIDGY 233
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
FTY L+ CK L +D+M G+ N+VTYT+L+D +C + + EA ++
Sbjct: 329 FTYTCLIDGTCKAGRLDDAIVLLDEM-VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
+ +G + + +Y T++ G+
Sbjct: 388 MMEKAGVRANELLYTTLIHGH 408
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y LV LCK L ++M G+ + V YT L+D NL +A
Sbjct: 534 LDPNVQAYTALVDGLCKNGCLNEAVQLFNEM-VHKGMSLDKVVYTALLDGYLKQGNLHDA 592
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + DSG + D F Y + G+
Sbjct: 593 FALKAKMIDSGLQLDLFCYTCFISGF 618
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + +P ++ TY LV LCK R + + + M + G++ N + YT LI K
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKA-GVRANELLYTTLIHGHFMNK 412
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N +A+ L+S + + G + D +Y +++G
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQG 442
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
G +PN++TY LID +C ++ EA+ + + D G P+ Y ++ G
Sbjct: 498 GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDG 547
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + D Y L+ K +L + +M S G++ +L YT I CN
Sbjct: 564 MVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDS-GLQLDLFCYTCFISGFCNLN 622
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA + S + G PD VYN ++ Y
Sbjct: 623 MMPEAREVFSEMIGHGIAPDRAVYNCLISKY 653
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P TYN ++ +C +L MR S G +P+ T+ ILID C + EA
Sbjct: 216 ITPSAVTYNVVIHGMCLAYTLDEALELFKSMR-SKGCRPSRFTFNILIDAHCKRGKMDEA 274
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL+ ++D G PD Y+T++ G
Sbjct: 275 FRLLKRMTDDGHVPDVVTYSTLISG 299
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV C+ + M A G+ PN+VTYT L+ +C L EA
Sbjct: 358 PDVVTYNTLVHGHCRAGQTERARELLSDMVAR-GLAPNVVTYTALVSGLCKANRLPEACG 416
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + SG P+ F Y ++ G+
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGF 440
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ +PPD ++Y L+ L K L Y +M S GI P+ VTY ++I +C L
Sbjct: 179 RDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDS-GITPSAVTYNVVIHGMCLAYTLD 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L ++ G +P F +N ++ +
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAH 265
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ TY LV LCK L QM++S G PNL TYT LI C+
Sbjct: 386 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS-GCAPNLFTYTALILGFCSAG 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
+ ++L + +G PD VY T+
Sbjct: 445 QVDGGLKLFGEMVCAGISPDHVVYGTL 471
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ LC + + ++ M KP +VT LI +C ++EA
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDM-VKRQCKPTVVTQNTLIHGLCKAGRIKEARE 346
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ A+ SG PD YNT++ G+
Sbjct: 347 VLDAMVSSGQSPDVVTYNTLVHGH 370
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
L+ + P Y L+ LC S F D R G P+ VTY ++ID C
Sbjct: 36 LLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRR--GCPPSPVTYNVIIDASCKR 93
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA L+ + + G PD YNT+M G
Sbjct: 94 GMLEEACDLIKKMIEDGHVPDVVTYNTVMDG 124
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PP TYN ++ CK L + + +M G P++VTY ++D +C + + EA+
Sbjct: 77 PPSPVTYNVIIDASCKRGMLEEACDLIKKMIED-GHVPDVVTYNTVMDGLCKSGRVEEAL 135
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + + G P+ +NTI+ G
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILG 159
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P FT+N L+ CK + + + +M G P++VTY+ LI +C+ + +A
Sbjct: 253 PSRFTFNILIDAHCKRGKMDEAFRLLKRMTDD-GHVPDVVTYSTLISGLCSIARVDDARH 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + KP NT++ G
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHG 334
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK + ++M LG PN ++ +I +C + +A +
Sbjct: 113 PDVVTYNTVMDGLCKSGRVEEALLLFNEME-RLGCTPNRRSHNTIILGLCQQSKIDQACQ 171
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + PD + Y ++ G
Sbjct: 172 VFHEMEARDIPPDSWSYGILIDG 194
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY LV+ C + TVY +D+MR PN+VTYTIL+ + REA+
Sbjct: 1623 PSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR-CPPNVVTYTILMHALGKAGRTREALD 1681
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G PD YN+++
Sbjct: 1682 TFDKLKEDGVAPDASFYNSLI 1702
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ L + L Y+ V++MR + GI PN+ T+ LI C+ A++
Sbjct: 1693 PDASFYNSLIYILGRAGRLEDAYSVVEEMRTT-GIAPNVTTFNTLISAACDHSQAENALK 1751
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + PD Y ++K
Sbjct: 1752 LLVKMEEQSCNPDIKTYTPLLK 1773
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 2 IFKQL----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+F++L PPD ++N LV CK R L + +++M+ G P++VTYT L++ C
Sbjct: 1578 VFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQH-GFSPSVVTYTSLVEAYC 1636
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
K+ + L+ + P+ Y +M
Sbjct: 1637 MEKDFQTVYALLDEMRKRRCPPNVVTYTILM 1667
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D N L+ LCK RS+ ++R + I P+ ++ L+ C + L+EA+
Sbjct: 1555 DTKAMNVLLDTLCKERSVKRARGVFQELRGT--IPPDENSFNTLVHGWCKARMLKEALDT 1612
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + GF P Y ++++ Y
Sbjct: 1613 MEEMKQHGFSPSVVTYTSLVEAY 1635
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY L+K CK R + F+ I P+ TYT+L+ +C + ++
Sbjct: 1763 PDIKTYTPLLKLCCK-RQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCL 1821
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + GF P ++ +M+
Sbjct: 1822 FLEEMVSKGFAPKQETFDLVME 1843
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY LV+ C + TVY +D+MR PN+VTYTIL+ + REA+
Sbjct: 1582 PSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR-CPPNVVTYTILMHALGKAGRTREALD 1640
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + G PD YN+++
Sbjct: 1641 TFDKLKEDGVAPDASFYNSLI 1661
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ L + L Y+ V++MR + GI PN+ T+ LI C+ A++
Sbjct: 1652 PDASFYNSLIYILGRAGRLEDAYSVVEEMRTT-GIAPNVTTFNTLISAACDHSQAENALK 1710
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + PD Y ++K
Sbjct: 1711 LLVKMEEQSCNPDIKTYTPLLK 1732
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 2 IFKQL----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+F++L PPD ++N LV CK R L + +++M+ G P++VTYT L++ C
Sbjct: 1537 VFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQH-GFSPSVVTYTSLVEAYC 1595
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
K+ + L+ + P+ Y +M
Sbjct: 1596 MEKDFQTVYALLDEMRKRRCPPNVVTYTILM 1626
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D N L+ LCK RS+ ++R + I P+ ++ L+ C + L+EA+
Sbjct: 1514 DTKAMNVLLDTLCKERSVKRARGVFQELRGT--IPPDENSFNTLVHGWCKARMLKEALDT 1571
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + GF P Y ++++ Y
Sbjct: 1572 MEEMKQHGFSPSVVTYTSLVEAY 1594
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY L+K CK R + F+ I P+ TYT+L+ +C + ++
Sbjct: 1722 PDIKTYTPLLKLCCK-RQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCL 1780
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + GF P ++ +M+
Sbjct: 1781 FLEEMVSKGFAPKQETFDLVME 1802
>gi|449530988|ref|XP_004172473.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 347
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K PD +TY L+ + + D M + G+ PN+V Y LI+ +C +
Sbjct: 177 LLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDM-INAGLVPNIVVYNALINGLCKSG 235
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL A RL + L+ G P YNT++ GY
Sbjct: 236 NLDRARRLFNKLARKGLSPTVVTYNTLIDGY 266
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I L P+I YN L+ LCK +L +++ A G+ P +VTY LID C
Sbjct: 212 MINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKL-ARKGLSPTVVTYNTLIDGYCKGG 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + + G P Y+T++ G
Sbjct: 271 RTTEALELKDKMREEGICPSSITYSTLIHG 300
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P + TYN L+ CK T D+MR GI P+ +TY+ LI +
Sbjct: 250 KGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREE-GICPSSITYSTLIHGLYMEGKSE 308
Query: 64 EAMRLVSALSDSG 76
++M L++ + +G
Sbjct: 309 QSMGLLNEMMKAG 321
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 45 NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
N + Y I I +C +KN+ + R++S L GF PD + Y +++
Sbjct: 150 NNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLI 193
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN L+ C+ ++ ++ + + G+ P+++TYT +I C +++ A
Sbjct: 247 PDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASE 306
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + SG KP+ F +N ++ G+
Sbjct: 307 LFDEMVSSGIKPNDFTFNVLIDGF 330
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY ++ CK + D+M +S GIKPN T+ +LID
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS-GIKPNDFTFNVLIDGFGKVG 334
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+R AM + + G PD + +++ GY
Sbjct: 335 NMRSAMVMYEKMLLLGCLPDVVTFTSLIDGY 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++++N L++ LC+ + + F M + G P++V+Y LI+ C + +
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNM-GNFGCFPDIVSYNTLINGFCRVNEISKGHD 270
Query: 68 LVSA-LSDSGFKPDCFVYNTIMKGY 91
L+ + G PD Y +I+ GY
Sbjct: 271 LLKEDMLIKGVSPDVITYTSIISGY 295
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L+ C+ + ++M+ + PN+ TY +LI+ +C +REA
Sbjct: 353 PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVR-NLSPNVYTYAVLINALCKENRIREARN 411
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L S P F+YN ++ G+
Sbjct: 412 FLRHLKSSEVVPKPFIYNPVIDGF 435
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+++TY L+ LCK + NF+ +++S + P Y +ID C +
Sbjct: 384 RNLSPNVYTYAVLINALCKENRIREARNFLRHLKSS-EVVPKPFIYNPVIDGFCKAGKVD 442
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +V+ + + +PD + ++ G
Sbjct: 443 EANFIVAEMQEKKCRPDKITFTILIIG 469
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ FT+N L+ K ++ + ++M LG P++VT+T LID C
Sbjct: 311 MVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLL-LGCLPDVVTFTSLIDGYCREG 369
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + ++L + P+ + Y ++
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINA 399
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI +YN L+ C+ ++ ++ + + G+ P+++TYT +I C +++ A
Sbjct: 247 PDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASE 306
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + SG KP+ F +N ++ G+
Sbjct: 307 LFDEMVSSGIKPNDFTFNVLIDGF 330
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD+ TY ++ CK + D+M +S GIKPN T+ +LID
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS-GIKPNDFTFNVLIDGFGKVG 334
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+R AM + + G PD + +++ GY
Sbjct: 335 NMRSAMVMYEKMLLLGCLPDVVTFTSLIDGY 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++++N L++ LC+ + + F M + G P++V+Y LI+ C + +
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNM-GNFGCFPDIVSYNTLINGFCRVNEISKGHD 270
Query: 68 LVSA-LSDSGFKPDCFVYNTIMKGY 91
L+ + G PD Y +I+ GY
Sbjct: 271 LLKEDMLIKGVSPDVITYTSIISGY 295
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ L+ C+ + ++M+ + PN+ TY +LI+ +C +REA
Sbjct: 353 PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVR-NLSPNVYTYAVLINALCKENRIREARN 411
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L S P F+YN ++ G+
Sbjct: 412 FLRHLKSSEVVPKPFIYNPVIDGF 435
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+++TY L+ LCK + NF+ +++S + P Y +ID C +
Sbjct: 384 RNLSPNVYTYAVLINALCKENRIREARNFLRHLKSS-EVVPKPFIYNPVIDGFCKAGKVD 442
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA +V+ + + +PD + ++ G
Sbjct: 443 EANFIVAEMQEKKCRPDKITFTILIIG 469
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ FT+N L+ K ++ + ++M LG P++VT+T LID C
Sbjct: 311 MVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLL-LGCLPDVVTFTSLIDGYCREG 369
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + ++L + P+ + Y ++
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINA 399
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +Y+ ++ LCK + + Y + +MRA +G PN+VTY+ LID +C E +
Sbjct: 218 PDVISYSTVIDALCKAQRVDKAYEYFKRMRA-VGCAPNVVTYSSLIDGLCKVDRPSECLE 276
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + + GF + +N ++
Sbjct: 277 LLLHMKEKGFGINIIDFNAML 297
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR----ASLGIKPNLVTYTILIDNVCNT 59
++ P++ TYN +V LCK + D M AS G +P++++Y+ +ID +C
Sbjct: 174 EECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKA 233
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + +A + G P+ Y++++ G
Sbjct: 234 QRVDKAYEYFKRMRAVGCAPNVVTYSSLIDG 264
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY +++ LC + + ++M AS G P LVTYT+LI C+
Sbjct: 593 MVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKM-ASRGCAPGLVTYTLLIGEACSAD 651
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTI 87
EA R+ A+ +GF P T+
Sbjct: 652 MADEAFRIFEAMVAAGFTPQAQTMRTL 678
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I +N ++ L K F +++ S G KPN+VTY + + +C + EA R+
Sbjct: 289 NIIDFNAMLHALWKNDEQEKACQFFERLLKS-GKKPNVVTYNVAVHGLCKAGRVDEAYRI 347
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +S PD Y++I+ G+
Sbjct: 348 LLEMVESKVTPDVITYSSIIDGF 370
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ PD+ TY+ ++ CK + + +M I P+ VT+ L+ K
Sbjct: 351 MVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECI-PHPVTFMTLLHGFSEHK 409
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
REA R+ + ++GF P YN +M
Sbjct: 410 KSREAFRVHEDMVNAGFIPGLQTYNVLM 437
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD TY L++CLC+ R + F+D M A + PN L++ +C +
Sbjct: 459 KKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEAD-NVVPNGAICHALVEVLCKQGEVD 517
Query: 64 EAMRLVSALSDSGFKP 79
EA ++ + + G +P
Sbjct: 518 EACSVLDNVVEVGCQP 533
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y ++ CK + + +D+M+ G+K +++ ++ LI +C + EA+
Sbjct: 109 PNEIMYTTVINGFCKAGQVDQAFELLDEMKER-GVKMDVLLHSTLIQGLCRKGRIDEALE 167
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + P+ YNT++ G
Sbjct: 168 QFKSMGEE-CSPNVITYNTVVNG 189
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ C+C S+ + +M+ +P+ TY LI +C + + EA
Sbjct: 428 PGLQTYNVLMDCVCGADSVESALEIYHKMKRK-KRQPDCNTYAPLIQCLCRARRVDEAKE 486
Query: 68 LVSALSDSGFKPD 80
+ + P+
Sbjct: 487 FLDVMEADNVVPN 499
>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ CK + ++ ++ +D+M A G+ P++VTY +LID C ++ +A
Sbjct: 590 PDVVAYNTLINGFCKVKRVSEAHDILDEMVAK-GLVPSVVTYNLLIDGWCKNGDIDQAFH 648
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S + +P+ Y T++ G
Sbjct: 649 CLSRMVGKEREPNVITYTTLIDG 671
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P FT+N + CLC+ +T + V +MR G +P + YT+L+ +C K EA
Sbjct: 485 PTQFTHNSIFGCLCRREDVTGALDMVREMRVH-GHEPWIKHYTLLVKQLCKRKRSAEACN 543
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + GF PD Y+ + G+
Sbjct: 544 FLAEMVREGFLPDIVAYSAAIDGF 567
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P + TYN L+ CK + ++ + +M +PN++TYT LID +CN
Sbjct: 618 MVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGK-EREPNVITYTTLIDGLCNAG 676
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L + + G P+ + ++ G
Sbjct: 677 RPDDAIHLWNEMRGKGCSPNRISFIALIHG 706
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I Y LVK LCK + NF+ +M G P++V Y+ ID K + +A+
Sbjct: 520 PWIKHYTLLVKQLCKRKRSAEACNFLAEM-VREGFLPDIVAYSAAIDGFVKIKAVDQALE 578
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G+ PD YNT++ G+
Sbjct: 579 IFRDICARGYCPDVVAYNTLINGF 602
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + LV KC + + +++M LGI+ N T+ +LI + +A++L
Sbjct: 227 DGHVLSILVLTFSKCGEVDKAFELIERME-DLGIRLNEKTFCVLIHGFVRQSRVDKALQL 285
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ SGF PD VY+ ++ G
Sbjct: 286 FKKMQKSGFAPDVSVYDALIGG 307
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ + + P +++ ++ LC L + F D +R +G K N++ Y LID + N+
Sbjct: 408 MVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVR--VGCKQNVLLYNNLIDKLSNS 465
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTI 87
L E L+ + SGF+P F +N+I
Sbjct: 466 NRLEECYLLLKEMKGSGFRPTQFTHNSI 493
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y+ + K +++ + A G P++V Y LI+ C K + EA
Sbjct: 555 PDIVAYSAAIDGFVKIKAVDQALEIFRDICAR-GYCPDVVAYNTLINGFCKVKRVSEAHD 613
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P YN ++ G+
Sbjct: 614 ILDEMVAKGLVPSVVTYNLLIDGW 637
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ PP++ T+N L+ LCK + + +MR + G P+++TY LID +C + +
Sbjct: 331 RNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRET-GCAPDIITYNSLIDGLCKSFQVD 389
Query: 64 EAMRLVSALSDSGFK-PDCFVYNTIMKGY 91
EA +L + +SG + Y+T+ GY
Sbjct: 390 EAFQLFQTIPESGVSAANAVTYSTLFHGY 418
Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ ++ LCK + Y Q+ PN+VT+ ILID +C K + EA +
Sbjct: 300 PNVVTYSTVINGLCKQGQVDDAYELF-QLMERRNCPPNVVTHNILIDGLCKAKRIEEARQ 358
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + ++G PD YN+++ G
Sbjct: 359 LYHRMRETGCAPDIITYNSLIDG 381
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P + +N ++ CK + L + Y ++ M G PN+ T+TILI +C
Sbjct: 223 VIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVM-IEKGCVPNVFTFTILITGLCKAN 281
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA +L+ + G P+ Y+T++ G
Sbjct: 282 RVGEAQQLLEKMVMGGCSPNVVTYSTVING 311
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN L+ LCK + + + S N VTY+ L + +A R
Sbjct: 370 PDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACR 429
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ S L D GF PD Y +++ Y
Sbjct: 430 IFSMLVDKGFSPDLATYTSLILEY 453
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ TY LV LCK + +M A G P+ VT++ LID +C +
Sbjct: 120 KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQ-GCAPDTVTFSTLIDGLCKFGSEE 178
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
+A R++ + G + TI++
Sbjct: 179 QAFRVLEDVIQRGMGNSDAAFETIIQ 204
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I T N ++ LC + Y V +M + LG P++ T LI C + A +
Sbjct: 619 PEISTVNVVISWLCSAAKVDDAYELVQRM-SKLGCCPDIETCNTLIGGYCKSGRADLARK 677
Query: 68 LVSALSDSGFKPD 80
L+ ++++G +P+
Sbjct: 678 LLEEMTEAGLEPN 690
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++F+ N + LC+ A + + PN TY ILI + +L A++L
Sbjct: 21 NVFSCNCALDMLCRLNRRQEALALFRNAMARICM-PNKFTYGILIRGFSSAGDLDIAIQL 79
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + SGF+ + V+ T+MKG
Sbjct: 80 LEEMKSSGFEGNAVVHTTLMKG 101
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTY L++ L +++M++S G + N V +T L+ +C+ + EA+
Sbjct: 55 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSS-GFEGNAVVHTTLMKGLCDAGRVVEALE 113
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
A++ PD Y ++
Sbjct: 114 HFRAMAKD-CAPDVMTYTALV 133
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K PD+ TY L+ CK V V++M AS G P + T + ++ +
Sbjct: 434 LVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEM-ASKGFPPRVNTLSAVLGGLFEGN 492
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A++L +++ G D +YN +++G
Sbjct: 493 HTERAIQLFDSMAARGCTDDALIYNLVVEG 522
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ +YN L+ L + + + M S G P + T ++I +C+ + +A LV
Sbjct: 586 VSSYNRLLSGLSRLQRWDEATQVFEAM-VSAGPAPEISTVNVVISWLCSAAKVDDAYELV 644
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+S G PD NT++ GY
Sbjct: 645 QRMSKLGCCPDIETCNTLIGGY 666
>gi|225425456|ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
[Vitis vinifera]
Length = 792
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L++ LC + ++++ S G +P+ TY ILI + + +AMR
Sbjct: 270 PDLCTYNSLIRVLCLVGKVKDALIVWEELKGS-GHEPDAFTYRILIQGCSKSYRMDDAMR 328
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + +GF PD VYNT++ G
Sbjct: 329 IFNEMQYNGFCPDTIVYNTLLDG 351
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PPDI TYN +++ L K +D + G ++V Y LI+ + +
Sbjct: 649 KVCPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYL-DIVMYNTLINALGKAGRID 707
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA +L + SG PD +NT+++
Sbjct: 708 EATKLFEQMRSSGINPDVVTFNTLIE 733
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI YN L+ L K + +QMR+S GI P++VT+ LI+ L+ A +
Sbjct: 689 DIVMYNTLINALGKAGRIDEATKLFEQMRSS-GINPDVVTFNTLIEIHAKAGQLKAAYKF 747
Query: 69 VSALSDSGFKPD 80
+ + D+G P+
Sbjct: 748 LKLMLDAGCSPN 759
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR----ASLGIKPNLVTYTILIDNVCNT 59
K D YN + L T N +M+ S P+L TY LI +C
Sbjct: 226 KDFDLDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNSLIRVLCLV 285
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ + L SG +PD F Y +++G
Sbjct: 286 GKVKDALIVWEELKGSGHEPDAFTYRILIQG 316
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F Y+ L+ CK L D+M++S G+KP+ V YT LI+ C + EAM
Sbjct: 304 PNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSS-GLKPDTVGYTTLINCFCGVGRIDEAME 362
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +++ K D +N ++KG
Sbjct: 363 LLKEMTEMKCKADAVTFNVLLKG 385
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N LVK CK L + + +M+ S PN++TY+ LID +C L+EA+
Sbjct: 197 PNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIE 256
Query: 68 LVSAL-SDSGFKPDCFVYNTIMKGY 91
L + S PD Y+ ++KG+
Sbjct: 257 LFEEMVSKDQILPDALTYSVLIKGF 281
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ PD TY+ L+K C ++ MR++ G PN+ Y++L++ C L E
Sbjct: 266 QILPDALTYSVLIKGFCHGGKADRARKIMEFMRSN-GCDPNVFNYSVLMNGFCKEGRLEE 324
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + SG KPD Y T++ +
Sbjct: 325 AKEVFDEMKSSGLKPDTVGYTTLINCF 351
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC L ++M + I P+ +TY++LI C+ A +
Sbjct: 233 PNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARK 292
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G P+ F Y+ +M G+
Sbjct: 293 IMEFMRSNGCDPNVFNYSVLMNGF 316
Score = 37.7 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L+ C C + + +M + K + VT+ +L+ +C EA
Sbjct: 337 LKPDTVGYTTLINCFCGVGRIDEAMELLKEM-TEMKCKADAVTFNVLLKGLCREGRFDEA 395
Query: 66 MRLVSALSDSG 76
+R++ L+ G
Sbjct: 396 LRMLENLAYEG 406
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LCK L + +D+MR G+KP+ +TYT LID C +L A
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLLDEMRMK-GLKPDKITYTTLIDGNCKEGDLDSAFE 332
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + D Y ++ G
Sbjct: 333 LRETMVKESIRLDDVAYTALISG 355
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L+ LCK + + ++M G+ PN VT+T LID C + A
Sbjct: 202 VQPDVYTYSVLINGLCKESKMNEANDLFNEM-LDKGLVPNGVTFTTLIDGHCKNGKVDSA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + F PD YNT++ G
Sbjct: 261 METYKQMLSQCFLPDLITYNTLIYG 285
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ + L + + M AS G++P++ TY++LI+ +C + EA
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHAS-GVQPDVYTYSVLINGLCKESKMNEA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + D G P+ + T++ G+
Sbjct: 226 NDLFNEMLDKGLVPNGVTFTTLIDGH 251
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ T+ L+ CK + + QM + + P+L+TY LI +C
Sbjct: 232 MLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFL-PDLITYNTLIYGLCKKG 290
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L++A L+ + G KPD Y T++ G
Sbjct: 291 DLKQAQDLLDEMRMKGLKPDKITYTTLIDG 320
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D + G++P++V++ L++ +L +
Sbjct: 133 PASLYFFNILMHRFCKEGEIWIAQSVFDSI-TKWGLRPSVVSFNTLMNGYIRLGDLDQGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+L +A+ SG +PD + Y+ ++ G
Sbjct: 192 KLKNAMHASGVQPDVYTYSVLING 215
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY L+ CK L + + + M I+ + V YT LI +C
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLDSAFELRETM-VKESIRLDDVAYTALISGLCQEGRAT 363
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A +++ + G KPD Y I+
Sbjct: 364 DAEKMLREMLSVGLKPDNGTYTMII 388
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y L+ LC+ T + +M S+G+KP+ TYT++I+ C ++++ A +L
Sbjct: 345 DDVAYTALISGLCQEGRATDAEKMLREM-LSVGLKPDNGTYTMIINEFCKKEDVKTAAKL 403
Query: 69 VSALSDSGFKP 79
+ + G P
Sbjct: 404 LKEMQRQGHVP 414
>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 909
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F YN L+ LCK +M A G++PN VTY ILI +C + +A+
Sbjct: 359 PNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAILIHALCKRGMIEDALC 417
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + D G K + YN+++ GY
Sbjct: 418 LFDKMRDKGIKVTVYPYNSLINGY 441
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T+ L+ CK + + D+M S + PN VT+ ++I+ C N+R+A +L
Sbjct: 502 YTFTALINGFCKDKKMDEAARLFDKMIDS-NVIPNEVTFNVMIEGYCLVGNIRKAFQLYD 560
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G KPD + Y +++ G
Sbjct: 561 QMVEMGLKPDNYTYRSLISG 580
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTYN + + + M G ++V++ ILI +C ++EA+
Sbjct: 744 PNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ--GHLASIVSFNILIKGLCKAGKIQEAID 801
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S +++SGF PDC Y+TI+
Sbjct: 802 LMSKITESGFSPDCISYSTII 822
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I ++N L+K LCK + + + ++ S G P+ ++Y+ +I +C ++ +A L
Sbjct: 780 IVSFNILIKGLCKAGKIQEAIDLMSKITES-GFSPDCISYSTIIHELCKMGDINKAFELW 838
Query: 70 SALSDSGFKPDCFVYNTIMK 89
+ + G KPD YN ++
Sbjct: 839 NEMLYKGLKPDVVAYNIFIR 858
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P DIF Y ++ L K ++ N DQM G PN VT+T+LI+N+C + L A
Sbjct: 674 PDDIF-YTCMIDALSKEENMIQALNCWDQMVVD-GYSPNTVTHTVLINNLCKSGYLGSAE 731
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L + P+ F YN +
Sbjct: 732 LLCKEMLAGNVLPNKFTYNCFL 753
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY L+ LCK + D+MR GIK + Y LI+ C +L
Sbjct: 390 RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDK-GIKVTVYPYNSLINGYCKQGSLD 448
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+S + G P Y+ ++ G
Sbjct: 449 RARGLLSGMVKEGLTPTAASYSPLIAG 475
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ T+N +++ C ++ + DQM +G+KP+ TY LI +C T
Sbjct: 527 MIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM-VEMGLKPDNYTYRSLISGLCLTS 585
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A V+ L +S + F ++ G+
Sbjct: 586 GVSKANEFVADLENSYAVLNNFSLTALLYGF 616
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV C+ L M LG P+ + +ID + + + EA L
Sbjct: 290 DEVTYRTLVYGFCRMEELEMALRITHDM-IRLGFVPSEANCSFMIDELRKKELVEEAFSL 348
Query: 69 VSALSDSGFKPDCFVYNTIM 88
L D G P+ F YN ++
Sbjct: 349 ACKLGDLGMVPNVFAYNALI 368
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE-AM 66
PD +Y+ ++ LCK + + ++M G+KP++V Y I I CN + A+
Sbjct: 813 PDCISYSTIIHELCKMGDINKAFELWNEMLYK-GLKPDVVAYNIFI-RWCNVHGESDKAL 870
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + + SG +P+ Y ++ G
Sbjct: 871 GIYTNMIRSGVQPNWDTYRALLSG 894
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
LG+ PN+ Y LID +C + +A RL ++ G +P+ Y ++
Sbjct: 355 LGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILI 403
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFTY LV LCK + + +D M G +PN + Y LID C L EA
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVE-GCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +S+ G+ P+ + Y++++
Sbjct: 693 VFTKMSERGYGPNVYTYSSLI 713
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L+ CK L + D+M G PN+VTYT LI + + A
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLKARKMSSANE 571
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G P+ Y ++ G+
Sbjct: 572 LFEMMLSEGCIPNVVTYTALIDGH 595
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY+ L+ L K + L + +M + PN++ YT +ID +C EA R
Sbjct: 704 PNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN-SCAPNVIIYTEMIDGLCKVGKTDEAYR 762
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + + G P+ Y ++ G+
Sbjct: 763 LMSMMEEKGCHPNVVTYTAMIDGF 786
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD TY+ ++ LC + + ++M+++ + P++ TYTILID+ C
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVG 529
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A + + G P+ Y ++ Y
Sbjct: 530 LLQQARKWFDEMVRDGCAPNVVTYTALIHAY 560
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI---------------KPNLVTYTIL 52
P++ TY L+ CK + +MR + I PN+ TY L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+D +C ++EA L+ +S G +P+ VY+ ++ G+
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ K R +++ N + +M S G PN+VTYT LID C + + +A +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSA-NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQ 606
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + + PD +Y I G
Sbjct: 607 IYARMRGNADIPDVDMYFKIDDG 629
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D Y ++ LC+ +F+ +MR+S I PN+VTY IL+ + L R+
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCI-PNVVTYRILLCGCLRKRQLGRCKRI 356
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+S + G P ++N+++ Y
Sbjct: 357 LSMMITEGCYPSRRIFNSLIHAY 379
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y ++ LCK Y + M G PN+VTYT +ID + + +
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK-GCHPNVVTYTAMIDGFGKAGKVDKCLE 797
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + G P+ Y ++
Sbjct: 798 LMRQMGAKGCAPNFVTYRVLI 818
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y+ L+ CK L +M + G PN+ TY+ LID + K L A++
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKM-SERGYGPNVYTYSSLIDRLFKDKRLDLALK 727
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++S + ++ P+ +Y ++ G
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDG 750
Score = 37.7 bits (86), Expect = 0.88, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY ++ K + + QM A G PN VTY +LI++ C L +A +
Sbjct: 774 PNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK-GCAPNFVTYRVLINHCCAAGLLDDAHQ 832
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + + Y +++G+
Sbjct: 833 LLDEMKQTYWPKHMAGYRKVIEGF 856
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + PD FT++ L+ C R + ++ S KP++VTYT LID C + NL
Sbjct: 141 LKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNL 200
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM+++ + P+ Y++++ G
Sbjct: 201 EKAMKMLGVMEGRKCVPNVVTYSSLLHG 228
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TY+ ++ CK + + +M GI P++VTYT ++D +C +
Sbjct: 71 KSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMD 130
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +V + G +PD F ++ ++ G+
Sbjct: 131 RACEMVREMKLKGVEPDKFTFSALITGW 158
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN +V LCK R + Y + +MR + P+LVTY+ +I+ C + A
Sbjct: 39 PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 98
Query: 68 LVSAL-SDSGFKPDCFVYNTIMKG 90
++ + + G PD Y +++ G
Sbjct: 99 ILREMVTRDGIAPDVVTYTSVVDG 122
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LCK L + +M S G PN+VTYT LI +C + A
Sbjct: 217 PNVVTYSSLLHGLCKAGDLDQALDLFRRM-TSKGCVPNVVTYTTLIHGLCAAHKVDAARL 275
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ + PD YN ++ GY
Sbjct: 276 LMDEMTATCCPPDTVSYNALLDGY 299
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD +YN L+ C+ + +M A+ P+ +TYT L+ CN L EA
Sbjct: 286 PPDTVSYNALLDGYCRLGRIEEAKQLFKEM-ATKSCLPDRITYTCLVRGFCNASRLEEAR 344
Query: 67 RLVSAL-SDSGFKPDCFVYNTIMKGY 91
L+ + + +G PD Y+ ++ GY
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGY 370
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD TY LV+ C L ++ M+ + GI P++VTY+I++ K
Sbjct: 318 KSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFV 377
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + P+ Y++++ G
Sbjct: 378 EAAEFIQEMIARNVAPNAVTYSSLIDG 404
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TY+ +V + + F+ +M A + PN VTY+ LID +C + A
Sbjct: 356 IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIAR-NVAPNAVTYSSLIDGLCKAGRVDHA 414
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M ++ + + +P +N+++
Sbjct: 415 MEVLKNMVNKRVEPSVGTFNSVI 437
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LC + +D+M A+ P+ V+Y L+D C + EA +
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC-CPPDTVSYNALLDGYCRLGRIEEAKQ 310
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L ++ PD Y +++G+
Sbjct: 311 LFKEMATKSCLPDRITYTCLVRGF 334
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+ TY+ L+ LCK + + M + ++P++ T+ +I +C
Sbjct: 386 MIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNM-VNKRVEPSVGTFNSVIGALCRLG 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ EA +L+ A++ G +P Y T+++G+
Sbjct: 445 DMDEAWKLLVAMAAHGLEPGMVTYTTLLEGF 475
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + T+ ++ CK L ++MR + PN TY ++++ +C + +A
Sbjct: 5 PTVVTWTIIIDGFCKANQLKQALACFEKMREF--VAPNERTYNVVVNGLCKARLTSKAYE 62
Query: 68 LVSALSD-SGFKPDCFVYNTIMKGY 91
++ + D PD Y+T++ G+
Sbjct: 63 VLKEMRDGKSVAPDLVTYSTVINGF 87
Score = 37.7 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P + T+N ++ LC+ + + + M A+ G++P +VTYT L++ T
Sbjct: 421 MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM-AAHGLEPGMVTYTTLLEGFSRTG 479
Query: 61 NLREAMRLVSAL 72
+ A L +
Sbjct: 480 RMEIAYELFEVM 491
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD +T+N +K C L ++MR G+KP++VTY +I +C
Sbjct: 351 MLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDH-GVKPDVVTYRTVIAALCRIG 409
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +AM + + D G PD + YN +++G+
Sbjct: 410 KMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 440
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM------------------RASLG- 41
++ + +PPD+ TYN +V LCK R++ F+ QM +S G
Sbjct: 211 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 270
Query: 42 ---------------IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
I P++VT ++L+ ++C ++EA + ++ G PD F YN
Sbjct: 271 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 330
Query: 87 IMKGY 91
++ GY
Sbjct: 331 MLNGY 335
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K PD+F+YN ++ L + + D M GI P+ T+ + I N
Sbjct: 316 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDFYTFNVQIKAYANCG 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L +AM + + + D G KPD Y T++
Sbjct: 375 MLDKAMIIFNEMRDHGVKPDVVTYRTVI 402
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI--KPNLVTYTILIDNVCNTKNLREA 65
PD+F+YN L+K LC N + +M A G P++V Y +ID ++ +A
Sbjct: 146 PDVFSYNILLKSLCNQGKSGQADNLL-RMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKA 204
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + G PD YN+++
Sbjct: 205 CDLFKEMVQRGIPPDLVTYNSVVHA 229
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L D + L+K C+ + + + LG P++ +Y IL+ ++CN
Sbjct: 103 LLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQG 162
Query: 61 NLREAMRLVSALSDSGF--KPDCFVYNTIMKGY 91
+A L+ +++ G PD YNT++ G+
Sbjct: 163 KSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGF 195
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN ++ K + + +M GI P+LVTY ++ +C + + +A
Sbjct: 183 PDVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDLVTYNSVVHALCKARAMDKAEA 241
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + P+ + YN ++ GY
Sbjct: 242 FLRQMVNKRVLPNNWTYNNLIYGY 265
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FK++ PD+ T + L+ LCK + + D M A G P++ +Y I+++
Sbjct: 277 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMKGQNPDVFSYNIMLNGY 335
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + L + G PD + +N +K Y
Sbjct: 336 ATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAY 370
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K L Y +M GI PN+VTY+ +I +C + + +AM
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILPNVVTYSSIIAALCKAQAMDKAM 254
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++++ +G P+C YN+I+ GY
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN +V C F+ +M + G++P++VTY L+D +C EA +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARK 325
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGY 349
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ TY+ ++ LCK +++ + M + G+ PN TY ++ C++
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +PD YN++M
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLM 311
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + L+K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 117 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDEN 176
Query: 61 NLREAMRLVSALSDSGFK--PDCFVYNTIMKGY 91
+EA+ L+ + D G PD Y T++ G+
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN L+ LCK T D M G+KP + TY L+ L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEM 358
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G P+ +V++ ++ Y
Sbjct: 359 HGLLDLMVRNGIHPNHYVFSILICAY 384
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI PN ++ILI +
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVD 391
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G PD Y T++
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ + ++ L+ K + +MR G+ P+ VTY +I +C +
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSG 423
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +AMR + D P VYN+++
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIH 452
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+FTY L+ C+ R+L + D+M G PN VTY+ LI+ +CN + EA
Sbjct: 229 LSPDVFTYTSLILGHCRNRNLDLAFGVFDRM-VKEGCDPNSVTYSTLINGLCNEGRVDEA 287
Query: 66 MRLVSALSDSGFKPDCFVY 84
+ ++ + + G +P + Y
Sbjct: 288 LDMLEEMIEKGIEPTVYTY 306
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++K LC + ++M +G P +VTY LI+ N+ A RL+
Sbjct: 410 TYNEIIKGLCLGGDIEKAMVLFEKM-LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDL 468
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ ++G +PD + YN ++ G+
Sbjct: 469 MKENGCEPDEWTYNELVSGF 488
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TYN LV K L + + +M G+ PN V+YT LID + A+
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEM-VECGLNPNPVSYTALIDGHSKDGKVDIALS 534
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G P+ YN ++ G
Sbjct: 535 LLKRMEEMGCNPNVESYNAVING 557
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN ++ L K + D+M G+ PN++TYT LID +C + A +
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKM-VEQGLLPNVITYTTLIDGLCRNGRTQFAFK 604
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + P+ + Y++++ G
Sbjct: 605 IFHDMEKRKCLPNLYTYSSLIYG 627
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P ++TY + LC V +M+ G +PN+ TYT LI +
Sbjct: 294 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKR-GCRPNVQTYTALISGLSRLG 352
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A+ L + G P+ YN ++
Sbjct: 353 KLEVAIGLYHKMLKEGLVPNTVTYNALI 380
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY+ L+ LC+ + + +G +P L TY+ L+ +C EA +
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEA-----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQ 670
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
LV + + GF PD +Y +++
Sbjct: 671 LVKDMKERGFCPDREIYYSLL 691
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+++ N L+ L K + N QM S GI+P+L+T+ LI+ + +REA ++
Sbjct: 163 LYSCNTLLIQLAKFEMVEGARNLYKQMLNS-GIQPSLLTFNTLINILSKKGKVREAELIL 221
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
S + PD F Y +++ G+
Sbjct: 222 SQIFQYDLSPDVFTYTSLILGH 243
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ LC +T M G N TY +I +C ++ +A
Sbjct: 369 LVPNTVTYNALINELCVGGRFSTALKIFHWMEGH-GSLANTQTYNEIIKGLCLGGDIEKA 427
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M L + G P YNT++ GY
Sbjct: 428 MVLFEKMLKMGPLPTVVTYNTLINGY 453
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ LC + + +++M GI+P + TYT+ I +C ++ EA+
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEM-IEKGIEPTVYTYTLPITALCAIEHEEEAIE 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV+ + G +P+ Y ++ G
Sbjct: 325 LVARMKKRGCRPNVQTYTALISG 347
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ L + L +M G+ PN VTY LI+ +C A++
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKE-GLVPNTVTYNALINELCVGGRFSTALK 394
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + YN I+KG
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKG 417
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K + + Q+ + P++ TYT LI C +NL A
Sbjct: 194 IQPSLLTFNTLINILSKKGKVREAELILSQI-FQYDLSPDVFTYTSLILGHCRNRNLDLA 252
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ Y+T++ G
Sbjct: 253 FGVFDRMVKEGCDPNSVTYSTLING 277
>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 632
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+K +D M +KPNL TY +LI +C +N+ EA
Sbjct: 173 LKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEA 232
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+V ++ SG +PD +NTI Y
Sbjct: 233 WNVVYKMTASGMQPDVVTFNTIATAY 258
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 36/119 (30%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTY------------------ 49
P++ TYN L++ LCK +++ +N V +M AS G++P++VT+
Sbjct: 211 PNLKTYNMLIRALCKMENISEAWNVVYKMTAS-GMQPDVVTFNTIATAYAQNGKTAQAEA 269
Query: 50 -----------------TILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
TI+I C ++EA+R V + D G +P+ V N+++ G+
Sbjct: 270 MILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGF 328
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+ L + +++ V + +KP+ + + LI+ + N+ +A +
Sbjct: 105 PSLATYTTLLNALTTQKYFKPIHSIVSLVEEK-QMKPDSIFFNALINAFAESGNMEDAKK 163
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + +SG KP YNT++KGY
Sbjct: 164 VVQKMKESGLKPSACTYNTLIKGY 187
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y+ L K + + + + M S G+ PN+V +T +I C+ + AMR
Sbjct: 386 PDAHAYSILAKGYVRAQEMEKAEEMLTVMTKS-GVHPNVVIFTTVISGWCSVGRMDNAMR 444
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G P+ + T++ GY
Sbjct: 445 VFDKMGEFGVSPNLKTFETLIWGY 468
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ PD+ TY+ ++ + L + M S G+KP+ Y+IL + + +
Sbjct: 348 QIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKS-GVKPDAHAYSILAKGYVRAQEMEK 406
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +++ ++ SG P+ ++ T++ G+
Sbjct: 407 AEEMLTVMTKSGVHPNVVIFTTVISGW 433
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G +P+L TYT L++ + K + +VS + + KPD +N ++ +
Sbjct: 102 GHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAF 152
>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1280
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P DI TYN L+ CK + + V +++ GI+PN+ TY ILID +C L+ A
Sbjct: 399 IPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEH-GIQPNMCTYNILIDGLCKGGQLKNA 457
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L G+ + + YN ++ G
Sbjct: 458 QDVFQDLLIKGYNVNAWTYNIMING 482
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++PP + T++ L+ C + ++M I P+ T+ IL+D +C
Sbjct: 219 MIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMK-NINPDAYTFNILVDALCKEG 277
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA +++ + G +P YNT+M GY
Sbjct: 278 KIKEAKNVIAVMMKEGVEPTVVTYNTLMDGY 308
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD +T+N LV LCK + N + M G++P +VTY L+D C
Sbjct: 254 MVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKE-GVEPTVVTYNTLMDGYCLVN 312
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A ++S +S P+ YN ++ G+
Sbjct: 313 EVGKAKHVLSIISRMRVAPNSRSYNIMINGF 343
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P++ TYN L+ LCK L + + G N TY I+I+ +C EA
Sbjct: 434 IQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIK-GYNVNAWTYNIMINGLCKEGLFDEA 492
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+S + D+G PD Y TI++
Sbjct: 493 EVLLSKMEDNGIIPDAVTYETIIQA 517
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN---------------------FVDQMRASLGI 42
K + PD+FT + L+ C C +T ++ F D + A LG
Sbjct: 96 KGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLA-LGF 154
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N VTY ILI+ +C R A++++ + + +Y+TI+ G
Sbjct: 155 HLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDG 202
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ +YN ++ CK + + +M GI P+ VTY LID +C +
Sbjct: 328 RVAPNSRSYNIMINGFCKIKMVDEALCLFHEM-CCRGIAPHKVTYNSLIDGLCKAGRIPY 386
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A LV + ++ D YN+++
Sbjct: 387 AWELVDEMHNNCIPADIVTYNSLI 410
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L+ LCK + Q+ L + N+V Y+ +ID +C K + +A L S
Sbjct: 160 TYGILINGLCKMGQTRAALQVLRQIEGKL-VNTNVVMYSTIIDGLCKDKLVTDAYGLYSE 218
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ P +++++ G+
Sbjct: 219 MIVKRIPPTVVTFSSLIYGF 238
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKC----RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+I + + P+I +N LV LC R+ VY +DQ GI PN V + LI N+
Sbjct: 435 MINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ-----GICPNAVFFNTLICNL 489
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
CN + E RL+ + G +PD F Y ++ GY
Sbjct: 490 CNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGY 524
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + +PPD+ TY ++ LCK + QM + G KPN TY LI +
Sbjct: 225 MIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDN-GFKPNNYTYNCLIHGYLSIG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+E ++++ +S G KPDC+ Y +++
Sbjct: 284 KWKEVVQMLEEMSARGLKPDCYTYGSLL 311
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++ PP++ +Y+ ++ + YN +M GI P++VTYT +ID +C +
Sbjct: 193 RRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEM-IDRGIPPDVVTYTTVIDGLCKAQLFD 251
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + + D+GFKP+ + YN ++ GY
Sbjct: 252 RAEGVFQQMIDNGFKPNNYTYNCLIHGY 279
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD +TY L+ LCK F D M GIKP + TY ILI L
Sbjct: 298 RGLKPDCYTYGSLLNYLCKNGRCREARFFFDSM-IRKGIKPKVSTYGILIHGYATKGALS 356
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E + + ++G PD ++N Y
Sbjct: 357 EMHSFLDLMVENGLSPDHHIFNIFFSAY 384
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ C + Y +M G+ P +VTY ++ + TK EA
Sbjct: 545 LSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRK-GVTPGVVTYNTILHGLFQTKRFSEA 603
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + +SG K D + YN I+ G
Sbjct: 604 KELYLNMINSGTKCDIYTYNIILNG 628
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D N L+K LC + + + + Q LG P+ V+YTIL+ +CN K EA+ L
Sbjct: 124 DHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALEL 183
Query: 69 VSALSDSGFK---PDCFVYNTIMKGY 91
+ ++D + P+ Y+ ++ G+
Sbjct: 184 LHMMADDHGRRCPPNVVSYSIVINGF 209
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +N KC + + ++MR G+ PN+V Y LID +C + +A
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQH-GLSPNVVNYGALIDALCKLGRVDDA 428
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + G P+ V+N+++ G
Sbjct: 429 EVKFNQMINEGVTPNIVVFNSLVYG 453
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI+TYN ++ LCK + + Q S G++ N++T+TI+I + +AM L
Sbjct: 618 DIYTYNIILNGLCKSNCVDEAFKMF-QSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDL 676
Query: 69 VSALSDSGFKPDCFVYNTI 87
+A+ +G P+ Y +
Sbjct: 677 FAAIPANGLVPNVVTYRLV 695
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F+Q+ P+ +TYN L+ V +++M A G+KP+ TY L++ +
Sbjct: 256 VFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSAR-GLKPDCYTYGSLLNYL 314
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C REA ++ G KP Y ++ GY
Sbjct: 315 CKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGY 349
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +N L+ LC + +D M +G++P+ +YT LI C T EA +
Sbjct: 477 PNAVFFNTLICNLCNVGRVMEGRRLIDLME-HVGVRPDAFSYTPLISGYCLTGRTDEAEK 535
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G P YNT++ GY
Sbjct: 536 VFDGMVSIGLSPTEVTYNTLLHGY 559
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F+Y L+ C D M S+G+ P VTY L+ C+ + +A
Sbjct: 512 PDAFSYTPLISGYCLTGRTDEAEKVFDGM-VSIGLSPTEVTYNTLLHGYCSASRIDDAYC 570
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G P YNTI+ G
Sbjct: 571 LFREMLRKGVTPGVVTYNTILHG 593
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCR----SLTTVYNFVDQMR-ASLGIKPNLVTYTILIDN 55
L+ P + +N L+ + + R S V +F +R S + PNL TY+ILI
Sbjct: 40 LLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLCTYSILIGR 99
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +L + +G++ D N ++KG
Sbjct: 100 FCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKG 134
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K L +I T+ ++ L K + + A+ G+ PN+VTY ++ +N+
Sbjct: 645 LCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPAN-GLVPNVVTYRLVAENLIEEG 703
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+L E L SA+ +G P+ + N +++
Sbjct: 704 SLEEFDSLFSAMEKNGTAPNSQMLNALVR 732
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++FTYN ++ LC+ L V + G KP+++TY LI +C
Sbjct: 242 VIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCL-IEQGPKPDVITYNNLIYGLCKNS 300
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA + + + G +PD + YNT++ GY
Sbjct: 301 KFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L+ LCK V M G PNL T+ IL++++C + L EA+
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTM-VEKGCAPNLFTFNILLESLCRYRKLDEALG 552
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + PD + T++ G+
Sbjct: 553 LLEEMKNKSVNPDAVTFGTLIDGF 576
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L++ LCK + +D++ G+ PNL TY + I +C L A+R+V
Sbjct: 218 TFNKLLRVLCKKGDVKECEKLLDKV-IKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276
Query: 72 LSDSGFKPDCFVYNTIMKG 90
L + G KPD YN ++ G
Sbjct: 277 LIEQGPKPDVITYNNLIYG 295
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ T+N LV LCK ++ V M S G P++ T+ ILI +
Sbjct: 420 KGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM-ISKGYFPDIFTFNILIHGYSTQLKME 478
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + D+G PD + YN+++ G
Sbjct: 479 NALEILDVMLDNGVDPDVYTYNSLLNG 505
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD +TYN L+ CK + V + G P+ TY LID +C+
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN-GFVPDQFTYRSLIDGLCHEG 370
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + G KP+ +YNT++KG
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKG 400
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+F PD FTY L+ LC ++ GIKPN++ Y LI + N
Sbjct: 348 VFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK-GIKPNVILYNTLIKGLSNQGM 406
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA +L + +S+ G P+ +N ++ G
Sbjct: 407 ILEAAQLANEMSEKGLIPEVQTFNILVNG 435
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ YN L+K L + ++M + G+ P + T+ IL++ +C +
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEM-SEKGLIPEVQTFNILVNGLCKMGCVS 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A LV + G+ PD F +N ++ GY
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGY 471
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PDIFT+N L+ + +D M + G+ P++ TY L++ +C T
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN-GVDPDVYTYNSLLNGLCKTS 510
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ M + + G P+ F +N +++
Sbjct: 511 KFEDVMETYKTMVEKGCAPNLFTFNILLE 539
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++FT+N L++ LC+ R L +++M+ + P+ VT+ LID C
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNK-SVNPDAVTFGTLIDGFCKNG 580
Query: 61 NLREAMRLVSALSDS 75
+L A L + ++
Sbjct: 581 DLDGAYTLFRKMEEA 595
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F P +F+YN ++ L + +MR GI P++ ++TI + + C T
Sbjct: 104 FYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMR-DRGITPDVYSFTIRMKSFCKTSRP 162
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL++ +S G + + Y T++ G+
Sbjct: 163 HAALRLLNNMSSQGCEMNVVAYCTVVGGF 191
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD T+ L+ CK L Y +M + + + TY I+I N+
Sbjct: 560 KSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVT 619
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + D PD + Y ++ G+
Sbjct: 620 MAEKLFQEMVDRCLGPDGYTYRLMVDGF 647
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY +V CK ++ Y F+ +M + G P+L T +I+ +C + EA
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMEN-GFIPSLTTLGRVINCLCVEDRVYEA 691
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
++ + G P+ NTI
Sbjct: 692 AGIIHRMVQKGLVPEAV--NTI 711
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D +N ++ LCK + N D M +GI+PN TY LID C + EAM+L
Sbjct: 486 DTIFFNAIMGNLCKKGRVIEAKNLFDLM-VRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 544
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +G KP YNTI+ GY
Sbjct: 545 LGVMVFNGVKPSDVTYNTIINGY 567
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y LV C +M G++P++VTYT L+D +C EA +
Sbjct: 275 PDCIMYTSLVHGYCSSGKPKEAIGIFKKM-CRHGVEPDVVTYTALMDYLCKNGKSTEARK 333
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +L G KPD Y T++ GY
Sbjct: 334 IFDSLVKRGHKPDSTTYGTLLHGY 357
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ Y ++ L + L Y+ D M G P++VTY+ +I + T+ + +A
Sbjct: 204 PLDVVAYTTVINGLLREGQLDKAYSLFDAM-LDRGPSPDVVTYSSIISALSKTQAMDKAT 262
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +G PDC +Y +++ GY
Sbjct: 263 QVFTRMVKNGVMPDCIMYTSLVHGY 287
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P +F+ L+K LC R + + V + LG KP+L +YTIL+ +C+ K ++
Sbjct: 131 RMSPILFSP--LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQ 188
Query: 65 AMRLVSALSD-SGFKP-DCFVYNTIMKG 90
A+ L+ ++D G P D Y T++ G
Sbjct: 189 ALDLLHIMADHKGRCPLDVVAYTTVING 216
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILID 54
++ +++P PD+F+Y L+K LC ++ + + M G P ++V YT +I+
Sbjct: 156 IVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVIN 215
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ L +A L A+ D G PD Y++I+
Sbjct: 216 GLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSII 249
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ ++ L K +++ +M + G+ P+ + YT L+ C++ +EA+
Sbjct: 240 PDVVTYSSIISALSKTQAMDKATQVFTRMVKN-GVMPDCIMYTSLVHGYCSSGKPKEAIG 298
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +PD Y +M
Sbjct: 299 IFKKMCRHGVEPDVVTYTALM 319
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+I + L+ LC C V +M GI + + + ++ N+C + EA
Sbjct: 448 LAPNIVVFTTLIHGLCTCDKWDKVEELAFEM-IDRGICLDTIFFNAIMGNLCKKGRVIEA 506
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + G +P+ YNT++ GY
Sbjct: 507 KNLFDLMVRIGIEPNTNTYNTLIDGY 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI Y ++ LC + + + ++ S G+ PN+V +T LI +C +
Sbjct: 413 LNPDIVNYGTVLDILCTAGRVDDALSQFNSLK-SEGLAPNIVVFTTLIHGLCTCDKWDKV 471
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L + D G D +N IM
Sbjct: 472 EELAFEMIDRGICLDTIFFNAIM 494
Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PD+ TY L+ LCK T D + G KP+ TY L+
Sbjct: 299 IFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSL-VKRGHKPDSTTYGTLLHGY 357
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L E L+ + G + ++N IM Y
Sbjct: 358 ATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAY 392
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+ TYN L+ C + + M + G+KP+ VTY +I+ + +
Sbjct: 518 IEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFN-GVKPSDVTYNTIINGYSQNGRIEDG 576
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ + G P Y +++G
Sbjct: 577 LTLLREMDGKGVNPGIVTYEMLLQG 601
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TY L+ LCK L + +M A G PN+VTYT LID +C + +A++ V
Sbjct: 45 VVTYTTLIDGLCKSGDLDAAQALLQKM-ADAGCAPNVVTYTALIDGLCKARRPHDAIQTV 103
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ SG +PD YN+++ G
Sbjct: 104 KRMLRSGCEPDLVTYNSLIHG 124
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T+N + LC+ N + M S G PNL++Y +ID +C + N+ +A +L
Sbjct: 290 EVYTHNAFIGALCRSGKFPLAKNILLGMIES-GSLPNLLSYNFVIDGLCKSGNVDDAWKL 348
Query: 69 VSALSDSG-FKPDCFVYNTIMKGY 91
+ DSG KPD +NT++ G+
Sbjct: 349 SRKMLDSGCCKPDVIFFNTLISGF 372
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN L+ LCK R + M A+ G ++VTYT LID +C + +L A L
Sbjct: 9 DAAIYNTLIAGLCKARKPRHALELLHVMAAN-GYDASVVTYTTLIDGLCKSGDLDAAQAL 67
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ ++D+G P+ Y ++ G
Sbjct: 68 LQKMADAGCAPNVVTYTALIDG 89
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA-M 66
P++ TY L+ LCK R V +M S G +P+LVTY LI +C + +A +
Sbjct: 78 PNVVTYTALIDGLCKARRPHDAIQTVKRMLRS-GCEPDLVTYNSLIHGLCMANRMDDAGL 136
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + +SG PD YNT + G
Sbjct: 137 VLQELMIESGRIPDVVTYNTFISG 160
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN + LCK L +++M GI P++VT+ +I +C + +A +
Sbjct: 149 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG-GISPDVVTFCSIISGLCKANRIDDAFQ 207
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + G PD Y+ ++
Sbjct: 208 VFKGMLERGCVPDSLTYSIML 228
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YNF++ LCK ++ + +M S KP+++ + LI C L +A +
Sbjct: 324 PNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQ 383
Query: 68 LVSALSDSGF-KPDCFVYNTIMKG 90
L+ + PD YNT++ G
Sbjct: 384 LLKEMKAKNICVPDVVTYNTMIDG 407
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LC + + ++ G P++VTY I +C L + +
Sbjct: 113 PDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLE 172
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G PD + +I+ G
Sbjct: 173 MLEEMDRGGISPDVVTFCSIISG 195
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +N L+ CK L+ + +M+A P++VTY +ID +L++A
Sbjct: 360 PDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKL 419
Query: 68 LVSALSDSG 76
L+ + G
Sbjct: 420 LLEEMQAVG 428
>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +L PD+FTY + L K L+T M GI P++ +ID +C K
Sbjct: 278 IIASKLKPDLFTYGTFINALTKAGKLSTAVKLFTSMWEK-GINPDVAICNCIIDQLCFKK 336
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA+++ ++D G + D YNT++K +
Sbjct: 337 KIPEALKIFGEMNDRGCQADVATYNTLIKHF 367
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN L+K CK R VY +D M G PN +TYT ++ T+ R+ M L
Sbjct: 356 DVATYNTLIKHFCKIRRTEKVYELLDDMEKK-GCSPNNMTYTYILK---TTEKPRDVMNL 411
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +SG K D YN I+ Y
Sbjct: 412 IQRMEESGCKLDSDTYNLILNLY 434
>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
Length = 854
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN L+ CK + ++ ++ +D+M A G+ P++VTY +LID C ++ +A
Sbjct: 630 PDVVAYNTLINGFCKVKRVSEAHDILDEMVAK-GLVPSVVTYNLLIDGWCKNGDIDQAFH 688
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+S + +P+ Y T++ G
Sbjct: 689 CLSRMVGKEREPNVITYTTLIDG 711
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P FT+N + CLC+ +T + V +MR G +P + YT+L+ +C K EA
Sbjct: 525 PTQFTHNSIFGCLCRREDVTGALDMVREMRVH-GHEPWIKHYTLLVKQLCKRKRSAEACN 583
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + GF PD Y+ + G+
Sbjct: 584 FLAEMVREGFLPDIVAYSAAIDGF 607
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P + TYN L+ CK + ++ + +M +PN++TYT LID +CN
Sbjct: 658 MVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGK-EREPNVITYTTLIDGLCNAG 716
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L + + G P+ + ++ G
Sbjct: 717 RPDDAIHLWNEMRGKGCSPNRISFIALIHG 746
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I Y LVK LCK + NF+ +M G P++V Y+ ID K + +A+
Sbjct: 560 PWIKHYTLLVKQLCKRKRSAEACNFLAEM-VREGFLPDIVAYSAAIDGFVKIKAVDQALE 618
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G+ PD YNT++ G+
Sbjct: 619 IFRDICARGYCPDVVAYNTLINGF 642
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ + + PD +++ ++ LC L + F D +R +G K N++ Y LID + N+
Sbjct: 448 MVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVR--VGCKQNVLLYNNLIDKLSNS 505
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTI 87
L E L+ + SGF+P F +N+I
Sbjct: 506 NRLEECYLLLKEMKGSGFRPTQFTHNSI 533
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + LV KC + + +++M LGI+ N T+ +LI + +A++L
Sbjct: 267 DGHVLSILVLTFSKCGEVDKAFELIERME-DLGIRLNEKTFCVLIHGFVRQSRVDKALQL 325
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ SGF PD VY+ ++ G
Sbjct: 326 FKKMQKSGFAPDVSVYDALIGG 347
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y+ + K +++ + A G P++V Y LI+ C K + EA
Sbjct: 595 PDIVAYSAAIDGFVKIKAVDQALEIFRDICAR-GYCPDVVAYNTLINGFCKVKRVSEAHD 653
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G P YN ++ G+
Sbjct: 654 ILDEMVAKGLVPSVVTYNLLIDGW 677
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ T+ L+ +CK +L V QMR G++ N VT+T LID C L
Sbjct: 324 KGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRER-GLQMNEVTFTALIDGFCKKGFLD 382
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ V + KP YN ++ GY
Sbjct: 383 DALLAVRGMKQCRIKPSVVCYNALINGY 410
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN LV + + V MR G+KPNLVT+ +++ +C + +A +
Sbjct: 223 PNVVTYNTLVAAFFRAGEVDGAERLVGMMREG-GLKPNLVTFNSMVNGMCKAGKMEDARK 281
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G PD YNT++ GY
Sbjct: 282 VFDEMVREGLAPDGVSYNTLVGGY 305
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ LC + L+ + M LG++P+ TYT LID C
Sbjct: 461 MLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNM-IKLGLQPDEFTYTSLIDGHCKEG 519
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ A+ L + +G PD Y+ ++ G
Sbjct: 520 NVESALSLHDKMVKAGVLPDVVTYSVLING 549
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TY+ ++ CK + + QM G+ P+ +TY+ LI +C K L
Sbjct: 429 KGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEK-GVLPDAITYSSLIRVLCGEKRLS 487
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + G +PD F Y +++ G+
Sbjct: 488 DAHVLFKNMIKLGLQPDEFTYTSLIDGH 515
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN LV+ LC + + MR + G PN+VTY L+ + A R
Sbjct: 188 PNVYTYNILVRALCGRGHRKEALSILRDMRGA-GCGPNVVTYNTLVAAFFRAGEVDGAER 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV + + G KP+ +N+++ G
Sbjct: 247 LVGMMREGGLKPNLVTFNSMVNG 269
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN ++ L SLT+ F D M S G+ PN+ TY IL+ +C + +EA+
Sbjct: 154 PSVLAYNAVLLALSDA-SLTSARRFFDSM-LSDGVAPNVYTYNILVRALCGRGHRKEALS 211
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G P+ YNT++ +
Sbjct: 212 ILRDMRGAGCGPNVVTYNTLVAAF 235
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD +YN LV CK + +M GI P++VT+T LI +C
Sbjct: 286 MVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK-GIMPDVVTFTSLIHVMCKAG 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL A+ LV + + G + + + ++ G+
Sbjct: 345 NLERAVTLVRQMRERGLQMNEVTFTALIDGF 375
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ T+N +V +CK + D+M G+ P+ V+Y L+ C EA
Sbjct: 256 LKPNLVTFNSMVNGMCKAGKMEDARKVFDEM-VREGLAPDGVSYNTLVGGYCKAGCSHEA 314
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + + ++ G PD + +++
Sbjct: 315 LSVFAEMTQKGIMPDVVTFTSLI 337
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY L+ CK ++ + + D+M G+ P++VTY++LI+ + + EA
Sbjct: 501 LQPDEFTYTSLIDGHCKEGNVESALSLHDKM-VKAGVLPDVVTYSVLINGLSKSARAMEA 559
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+L+ L P Y+ +M
Sbjct: 560 QQLLFKLYHEDPIPANTKYDALM 582
>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 614
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
KQ+ PD+FT+N L+ C C L ++ + ++ LG P+ VT T LI +C +
Sbjct: 92 LKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKI-FKLGFHPDTVTITTLIKGLCLNGKV 150
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
REA+ + GF D Y T++ G
Sbjct: 151 REALHFHDDVIAKGFHLDQVSYGTLING 178
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P D+ TY+ L+ LCK + + +++ GI+PN+ TYTIL+D +C L++A
Sbjct: 411 PADVITYSSLLDALCKNHQVDKAITLITKIKDQ-GIQPNIYTYTILVDGLCKNGRLKDAQ 469
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ L G+ D +YN ++ G
Sbjct: 470 AVYQDLLIKGYHLDVKMYNVMVNG 493
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P+ TYN L+ L K ++ ++ V++M + G +++TY+ L+D +C +
Sbjct: 373 KSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMH-NRGQPADVITYSSLLDALCKNHQVD 431
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ L++ + D G +P+ + Y ++ G
Sbjct: 432 KAITLITKIKDQGIQPNIYTYTILVDG 458
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 1 LIFKQLPPDIFTYNFLV-KCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+I K++ PD+ TY L+ CL R L +QM IKP++ T+ IL+D +C
Sbjct: 230 MIVKRIFPDVVTYTTLIYGCLIVGR-LKEAVGLFNQMLLK-NIKPDVYTFNILVDGLCKE 287
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++A +++ + G + YN++M GY
Sbjct: 288 GEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN----------------------------- 31
++ K + PD++T+N LV LCK + N
Sbjct: 265 MLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQ 324
Query: 32 -----FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
FV A G+ P++ +Y+I+I+ +C TK + EA+ L + P+ YN+
Sbjct: 325 ENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNS 384
Query: 87 IMKG 90
++ G
Sbjct: 385 LIDG 388
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ +Y+ ++ LCK + + N +M S + PN VTY LID + +
Sbjct: 338 RGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMH-SKSMAPNTVTYNSLIDGLLKYGRIS 396
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A LV+ + + G D Y++++
Sbjct: 397 DAWDLVNEMHNRGQPADVITYSSLL 421
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
IF +N ++ L K T +F QM I+P+L T+ ILI+ C+ +L A ++
Sbjct: 64 IFEFNKILSSLVKLNHFHTAISFSKQMELK-QIQPDLFTFNILINCFCHLGHLNFAFSVL 122
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ + GF PD T++KG
Sbjct: 123 AKIFKLGFHPDTVTITTLIKG 143
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D +Y L+ LCK + ++ L ++PN+V Y +ID++C K
Sbjct: 160 VIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLL-VQPNVVMYNTIIDSLCKDK 218
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L S + PD Y T++ G
Sbjct: 219 LVIHASDLCSEMIVKRIFPDVVTYTTLIYG 248
>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
Length = 864
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 9 DIFTYNFLVKCLCKCRSLT----TVYNFVDQMRASLG---IKPNLVTYTILIDNVCNTKN 61
D FT N LVK C+ S+ + N +D M G ++PNLVTYT LI C
Sbjct: 112 DSFTCNILVKGFCRIGSVKYGEWVMDNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHG 171
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA+ L + GF PD Y++I+ G
Sbjct: 172 LSEALSLYEEMISDGFLPDVVTYSSIING 200
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L+ CK L+ + ++M S G P++VTY+ +I+ +C L EA
Sbjct: 152 LEPNLVTYTTLISAYCKQHGLSEALSLYEEM-ISDGFLPDVVTYSSIINGLCKRGMLTEA 210
Query: 66 MRLVSALSDSGFKPDCFVY 84
L+ + G P+ VY
Sbjct: 211 KALLREMDKMGVNPNHVVY 229
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + D TYN L+ K + QM + G+ P + TY +L+ + +
Sbjct: 639 EGISADTVTYNALIHGHFKSSHIEKALATYTQM-LNEGVSPGIRTYNLLLGGLLAAGLMS 697
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A ++S + DSG PD +YNT++ G+
Sbjct: 698 KAYEILSKMKDSGLDPDASLYNTLISGH 725
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ ++ LCK LT + +M +G+ PN V Y IL+D++ + E+
Sbjct: 189 PDVVTYSSIINGLCKRGMLTEAKALLREMD-KMGVNPNHVVYAILVDSLFKAGSAWESFI 247
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
S + G D V T++ G
Sbjct: 248 YQSQMIVCGVSFDLVVCTTLIDG 270
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY ++ CK + + + M + PN+VTY+ +I+ L A+R
Sbjct: 294 PNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQ-VVPNVVTYSSIINGYTKKGMLDVAVR 352
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D P+ ++Y T++ G+
Sbjct: 353 IMKKMLDQNIMPNAYIYATLIDGH 376
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P I TYN L+ L ++ Y + +M+ S G+ P+ Y LI
Sbjct: 671 MLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDS-GLDPDASLYNTLISGHGKIG 729
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N +EA++ + G P YN +++ +
Sbjct: 730 NKKEAIKFYCEMVTKGLVPKTSTYNVLIEDF 760
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L D Y L+ K + + ++M A GIK ++V Y +LI+ +
Sbjct: 427 MMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKM-AETGIKFDVVAYNVLINGLLRLG 485
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A + S + + G PD YNT++ Y
Sbjct: 486 KY-DAESVYSGIRELGLAPDRATYNTMINAY 515
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN-- 58
++ K L P TYN L++ K + +++M+ + PN TY ILI CN
Sbjct: 741 MVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRR-VPPNSSTYDILICGWCNLS 799
Query: 59 ---------TKNLR-EAMRLVSALSDSGFKP 79
K R EA L + +++ GF P
Sbjct: 800 KQPELDRISKKTYRTEARTLFAEMNEKGFVP 830
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++ CK L ++M+ + PN +T IL+ + A
Sbjct: 501 LAPDRATYNTMINAYCKQGKLENAIKLWNEMKGH-SVMPNSITCNILVGGLSKAGETERA 559
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ +++ + G P+ ++ ++
Sbjct: 560 IDVLNEMLLWGICPNVTIHRALL 582
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L PN +TYT +ID C ++ A L+ + P+ Y++I+ GY
Sbjct: 288 AKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGY 341
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P++ TY L LCK + T + +M G++ N+ TY L++ +C +
Sbjct: 176 MVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM-CGKGLQLNICTYNSLVNGLCKSG 234
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+R+A++L+ + +G PD + T+M Y
Sbjct: 235 NIRQAVKLMEEMEVAGMYPDTITFTTLMDAY 265
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +I TYN LV LCK ++ +++M + G+ P+ +T+T L+D C T +
Sbjct: 214 KGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVA-GMYPDTITFTTLMDAYCKTGEMV 272
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ + D G +P +N +M G+
Sbjct: 273 KAHELLREMLDRGLQPTVITFNVLMNGF 300
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ PD+ +Y+ ++ C L V + +M+ G+KPNL TY +I +C + +
Sbjct: 3 FRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMK-GLKPNLYTYNSIILLLCKSGKV 61
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A R++ + + G PD VY T++ G+
Sbjct: 62 DDAERVLREMINQGIVPDTVVYTTLIDGF 90
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD Y ++ LC+C + ++M S G++P+ VTYT LID C + +
Sbjct: 109 QRIVPDFIAYTAVICGLCRCGKMMEADKVFNKM-FSRGVEPDEVTYTTLIDGYCKSGEME 167
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A L + + SG P+ Y + G
Sbjct: 168 KAFSLHNQMVQSGLTPNVVTYTALADG 194
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L+ CK + + + +M G++P ++T+ +L++ C + L + R
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREM-LDRGLQPTVITFNVLMNGFCMSGMLEDGER 311
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L++ + + G P+ YN++MK Y
Sbjct: 312 LLAWMLEKGIMPNTTTYNSLMKQY 335
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD TY L+ CK + ++ +QM S G+ PN+VTYT L D +C +
Sbjct: 144 RGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS-GLTPNVVTYTALADGLCKLGQVD 202
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + G + + YN+++ G
Sbjct: 203 TANELLHEMCGKGLQLNICTYNSLVNG 229
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P+++TYN ++ LCK + + +M + GI P+ V YT LID C N+
Sbjct: 38 MKGLKPNLYTYNSIILLLCKSGKVDDAERVLREM-INQGIVPDTVVYTTLIDGFCKLGNI 96
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +L + PD Y ++ G
Sbjct: 97 QAAYKLFDEMEKQRIVPDFIAYTAVICG 124
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD Y L+ CK ++ Y D+M I P+ + YT +I +C
Sbjct: 71 MINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQR-IVPDFIAYTAVICGLCRCG 129
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + + G +PD Y T++ GY
Sbjct: 130 KMMEADKVFNKMFSRGVEPDEVTYTTLIDGY 160
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ K + P+ TYN L+K C R T +Y + + G+ P+ TY ILI C
Sbjct: 316 MLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGM----CARGVMPDSNTYNILIKGHC 371
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNT 86
+N++EA L +++ GF YN+
Sbjct: 372 KARNMKEAWFLHKEMAEKGFNLTASSYNS 400
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ LCK R + F +M+ G KPN+ TYT +I + N+ EA
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ-GFKPNVFTYTTMISGLAKAGNIVEADT 815
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G D +YN I++G
Sbjct: 816 LFEKFKEKGGVADSAIYNAIIEG 838
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L P+++T+N L+ L K ++ M+ L PN +TY+ILI +C +
Sbjct: 715 LMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK-DLKCTPNYITYSILIHGLCKIR 773
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + GFKP+ F Y T++ G
Sbjct: 774 KFNKAFVFWQEMQKQGFKPNVFTYTTMISG 803
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TYN ++ LCK L T D M+ + G+ PN++T I++D +C + L
Sbjct: 403 KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDA-GLFPNVITVNIMVDRLCKAQRLD 461
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + L +PD Y ++++G
Sbjct: 462 DACSIFEGLDHKTCRPDAVTYCSLIEG 488
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ YN + C K + + F +M+A+ G+ + VTYT +I +C L EA
Sbjct: 266 LEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKAN-GLVLDDVTYTSMIGVLCKADRLNEA 324
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + + P + YNT++ GY
Sbjct: 325 VELFEHMDQNKQVPCAYAYNTMIMGY 350
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN ++ CK + Y +++M+ G +P +VTY +ID + L EA L
Sbjct: 618 DTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK-GHEPTVVTYGSVIDGLAKIDRLDEAYML 676
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
G + + +Y++++ G+
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGF 699
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY ++ L K L Y ++ + S GI+ N+V Y+ LID +
Sbjct: 648 KGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK-SKGIELNVVIYSSLIDGFGKVGRID 706
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA ++ L G P+ + +N ++
Sbjct: 707 EAYLIMEELMQKGLTPNVYTWNCLL 731
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLT---TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L P++ T N +V LCK + L +++ +D +P+ VTY LI+ + +
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTC----RPDAVTYCSLIEGLGRHGRV 495
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + D+ P+ VY ++++ +
Sbjct: 496 DEAYKLYEQMLDANQIPNAVVYTSLIRNF 524
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ N + C+ K + +++ +LG P+ +YTILI + EA
Sbjct: 547 PDLLLLNTYMDCVFKAGEIEKGRALFQEIK-NLGFIPDARSYTILIHGLVKAGFAHEAYE 605
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G D YNT++ G+
Sbjct: 606 LFYTMKEQGCVLDTRAYNTVIDGF 629
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD TY L++ L + + Y +QM + I PN V YT LI N
Sbjct: 470 LDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQI-PNAVVYTSLIRNFFKCG 528
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ ++ + + G PD + NT M
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYM 556
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 2 IFKQ-----LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I+KQ L PD+ TYN L+ LCK L V++ +D+M + G+KP+ ++YT LID
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMN-GLKPDKISYTTLIDGS 321
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C +L A+ L + + + D Y ++
Sbjct: 322 CKEGDLEIALELRNKMIQESIRLDDVAYTALI 353
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY+ L+ LCK L ++M + G+ PN VT+T LI C + + AM
Sbjct: 204 PDVYTYSILINGLCKEGKLDEANELFNEMLDN-GLVPNGVTFTTLIHGHCKNEKVDLAME 262
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G PD YNT++ G
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYG 285
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ K L + M AS G +P++ TY+ILI+ +C L EA
Sbjct: 167 LRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHAS-GAQPDVYTYSILINGLCKEGKLDEA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + D+G P+ + T++ G+
Sbjct: 226 NELFNEMLDNGLVPNGVTFTTLIHGH 251
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L++ CK + + D + G++P++V++ LI+ +L E
Sbjct: 133 PASLYFFNILMQRFCKEGEMRLAQSVFDAI-TKWGLRPSVVSFNTLINGYIKLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ SG +PD + Y+ ++ G
Sbjct: 192 RLKSAMHASGAQPDVYTYSILING 215
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ L+ CK + QM S G+ P+L+TY LI +C L++
Sbjct: 237 LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM-LSQGLSPDLITYNTLIYGLCKKGELKQV 295
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G KPD Y T++ G
Sbjct: 296 HDLIDEMIMNGLKPDKISYTTLIDG 320
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D Y L+ CLC+ + + +M S+G+KP+ TYT++I+ C +
Sbjct: 337 MIQESIRLDDVAYTALISCLCREGRASDAEKMLREM-LSVGLKPDNGTYTMIINEFCKKR 395
Query: 61 NLREAMRLVSALSDSGFKP 79
+ + A +L+ + G P
Sbjct: 396 DSKTASKLLREMQRDGPLP 414
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+FTY L+ C+ R+L + D+M G PN VTY+ LI+ +CN + EA
Sbjct: 271 LSPDVFTYTSLILGHCRNRNLDLAFGVFDRM-VKEGCDPNSVTYSTLINGLCNEGRVDEA 329
Query: 66 MRLVSALSDSGFKPDCFVY 84
+ ++ + + G +P + Y
Sbjct: 330 LDMLEEMIEKGIEPTVYTY 348
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++K LC + ++M +G P +VTY LI+ N+ A RL+
Sbjct: 452 TYNEIIKGLCLGGDIEKAMVLFEKM-LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDL 510
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ ++G +PD + YN ++ G+
Sbjct: 511 MKENGCEPDEWTYNELVSGF 530
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN ++ L K + D+M A G+ PN++TYT LID +C + A +
Sbjct: 588 PNVESYNAVINGLSKENRFSEAEKICDKM-AEQGLLPNVITYTTLIDGLCRNGRTQFAFK 646
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + P+ + Y++++ G
Sbjct: 647 IFHDMEKRKCLPNLYTYSSLIYG 669
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TYN LV K L + + +M G+ PN V+YT LID + A+
Sbjct: 518 PDEWTYNELVSGFSKWGKLESASFYFQEM-VECGLNPNPVSYTTLIDGHSKDGKVDIALS 576
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + G P+ YN ++ G
Sbjct: 577 LLERMEEMGCNPNVESYNAVING 599
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P ++TY + LC V +M+ G +PN+ TYT LI +
Sbjct: 336 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKR-GCRPNVQTYTALISGLSRLG 394
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
L A+ L + G P+ YN ++
Sbjct: 395 KLEVAIGLYHKMLKEGLVPNTVTYNALI 422
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+++ N L+ L K + N QM S GI+P+L+T+ LI+ + +REA ++
Sbjct: 205 LYSCNTLLIQLAKFEMVEGARNLYKQMLNS-GIQPSLLTFNTLINILSKKGKVREAELIL 263
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
S + PD F Y +++ G+
Sbjct: 264 SQIFQYDLSPDVFTYTSLILGH 285
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TY+ L+ LC+ + +M G+ P+ VT+T LID + A
Sbjct: 658 PNLYTYSSLIYGLCQEGKADEAEILLKEMERK-GLAPDEVTFTSLIDGFVVLGRIDHAFL 716
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D G KP+ Y+ ++KG
Sbjct: 717 LLRRMVDVGCKPNYRTYSVLLKG 739
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L+ LC+ + M + PNL TY+ LI +C EA
Sbjct: 621 LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL-PNLYTYSSLIYGLCQEGKADEA 679
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G PD + +++ G+
Sbjct: 680 EILLKEMERKGLAPDEVTFTSLIDGF 705
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN L+ LC +T M G N TY +I +C ++ +A
Sbjct: 411 LVPNTVTYNALINELCVGGRFSTALKIFHWMEGH-GSLANTQTYNEIIKGLCLGGDIEKA 469
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M L + G P YNT++ GY
Sbjct: 470 MVLFEKMLKMGPLPTVVTYNTLINGY 495
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ LC + + +++M GI+P + TYT+ I +C ++ EA+
Sbjct: 308 PNSVTYSTLINGLCNEGRVDEALDMLEEM-IEKGIEPTVYTYTLPITALCAIEHEEEAIE 366
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
LV+ + G +P+ Y ++ G
Sbjct: 367 LVARMKKRGCRPNVQTYTALISG 389
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 29 VYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
V N + +M + +G +P L TY+ L+ +C EA +LV + + GF PD +Y +++
Sbjct: 773 VSNLLARM-SEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLL 831
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ L + L +M G+ PN VTY LI+ +C A++
Sbjct: 378 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKE-GLVPNTVTYNALINELCVGGRFSTALK 436
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G + YN I+KG
Sbjct: 437 IFHWMEGHGSLANTQTYNEIIKG 459
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K + + Q+ + P++ TYT LI C +NL A
Sbjct: 236 IQPSLLTFNTLINILSKKGKVREAELILSQI-FQYDLSPDVFTYTSLILGHCRNRNLDLA 294
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ Y+T++ G
Sbjct: 295 FGVFDRMVKEGCDPNSVTYSTLING 319
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY+ L+ LCK R + F +M+ G KPN+ TYT +I + N+ EA
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ-GFKPNVFTYTTMISGLAKAGNIVEADT 815
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G D +YN I++G
Sbjct: 816 LFEKFKEKGGVADSAIYNAIIEG 838
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K L P+++T+N L+ L K ++ M+ L PN +TY+ILI +C +
Sbjct: 715 LMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK-DLKCTPNYITYSILIHGLCKIR 773
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + GFKP+ F Y T++ G
Sbjct: 774 KFNKAFVFWQEMQKQGFKPNVFTYTTMISG 803
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++ TYN ++ LCK L T D M+ + G+ PN++T I++D +C + L
Sbjct: 403 KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDA-GLFPNVITVNIMVDRLCKAQRLD 461
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + L +PD Y ++++G
Sbjct: 462 DACSIFEGLDHKTCRPDAVTYCSLIEG 488
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ YN + C K + + +M+A+ G+ + VTYT +I +C L EA
Sbjct: 266 LEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKAN-GLVLDDVTYTSMIGVLCKADRLNEA 324
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L + + P + YNT++ GY
Sbjct: 325 VELFEHMDQNKQVPCAYAYNTMIMGY 350
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN ++ CK + Y +++M+ G +P +VTY +ID + L EA L
Sbjct: 618 DTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK-GHEPTVVTYGSVIDGLAKIDRLDEAYML 676
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
G + + +Y++++ G+
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGF 699
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P + TY ++ L K L Y ++ + S GI+ N+V Y+ LID +
Sbjct: 648 KGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK-SKGIELNVVIYSSLIDGFGKVGRID 706
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA ++ L G P+ + +N ++
Sbjct: 707 EAYLIMEELMQKGLTPNVYTWNCLL 731
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLT---TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
L P++ T N +V LCK + L +++ +D +P+ VTY LI+ + +
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTC----RPDAVTYCSLIEGLGRHGRV 495
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + D+ P+ VY ++++ +
Sbjct: 496 DEAYKLYEQMLDANQIPNAVVYTSLIRNF 524
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ N + C+ K + +++ +LG P+ +YTILI + EA
Sbjct: 547 PDLLLLNTYMDCVFKAGEIEKGRALFQEIK-NLGFIPDARSYTILIHGLVKAGFAHEAYE 605
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G D YNT++ G+
Sbjct: 606 LFYTMKEQGCVLDTRAYNTVIDGF 629
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PD TY L++ L + + Y +QM + I PN V YT LI N
Sbjct: 470 LDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQI-PNAVVYTSLIRNFFKCG 528
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ ++ + + G PD + NT M
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYM 556
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVTY I+I +N A
Sbjct: 480 LTPDTFTYSVMINCLGKAGHLNAAHRLFCRM-VDEGCVPNLVTYNIMIALQAKARNYEIA 538
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + SGF+PD Y +M+
Sbjct: 539 LKLYRDMQQSGFEPDKVTYCIVME 562
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ + L N QM+ + G +P+ VTY LID + L AM
Sbjct: 412 PNVVTYNRIIHSYGRANYLQDAVNVFKQMQEA-GCEPDRVTYCTLIDIHAKSGFLDVAMG 470
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + D+G PD F Y+ ++
Sbjct: 471 MYEKMQDAGLTPDTFTYSVMI 491
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 3 FKQLPP---DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
K+LP D TY ++ L + + + +DQM G +PN+VTY +I +
Sbjct: 369 LKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKD-GCQPNVVTYNRIIHSYGRA 427
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIM 88
L++A+ + + ++G +PD Y T++
Sbjct: 428 NYLQDAVNVFKQMQEAGCEPDRVTYCTLI 456
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+ PD TY L+ K L ++M+ + G+ P+ TY+++I+ +
Sbjct: 436 VFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDA-GLTPDTFTYSVMINCL 494
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L A RL + D G P+ YN ++
Sbjct: 495 GKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMI 526
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ M+ S G +P+ VTY I+++ + + L EA
Sbjct: 517 PNLVTYNIMIALQAKARNYEIALKLYRDMQQS-GFEPDKVTYCIVMEVLGHCGFLEEAEG 575
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + PD VY ++
Sbjct: 576 IFIEMQKKNWVPDEPVYGLLV 596
>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 543
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNF-VDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P++ T+N ++ CLC+ TV+ F V + +G++P++VT+T +++ +C N+ +
Sbjct: 57 VKPNVSTHNIVINCLCRLNH--TVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQ 114
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+R V L D G++ D + I+ G
Sbjct: 115 AIRFVDHLKDMGYESDRYTRGAIING 140
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ ++ TYN ++ C + D M G PN+VTY LI C TKN+ +A
Sbjct: 267 IEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRK-GCLPNIVTYNSLIHGWCETKNMNKA 325
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + ++G PD ++T++ G+
Sbjct: 326 MYFLGEMVNNGLDPDVVTWSTLIGGF 351
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ Y+ +V LCK + + QM GI+PNL TY LI +CN +EA L
Sbjct: 165 DVTAYSAVVDGLCKDGMVFEALDLFSQMTGK-GIQPNLFTYNCLIHGLCNFDRWKEAAPL 223
Query: 69 VSALSDSGFKPDCFVYNTI 87
++ + G PD +N I
Sbjct: 224 LANMMRKGIMPDVQTFNVI 242
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLT---TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
K + PD+ T+N + K ++ ++++F+ M GI+ N+VTY +I C
Sbjct: 230 KGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHM----GIEHNVVTYNSIIGAHCMLN 285
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+++AM + + G P+ YN+++ G+
Sbjct: 286 QMKDAMEVFDLMIRKGCLPNIVTYNSLIHGW 316
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F++L DI Y+ ++ +C L + +S G+K ++VTY I+I+ +
Sbjct: 398 LFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYL-SSKGVKIDVVTYNIMINGL 456
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C L +A L+ + ++G PD YN ++G
Sbjct: 457 CKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQG 490
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P+I TYN L+ C+ +++ F+ +M + G+ P++VT++ LI C
Sbjct: 297 MIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEM-VNNGLDPDVVTWSTLIGGFCKAG 355
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + G PD I+ G
Sbjct: 356 KPVAAKELFFVMHKHGQLPDLQTCAIILDG 385
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
D +T ++ LCK + +++ +M ++ Y+ ++D +C + EA+
Sbjct: 128 ESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQ-NCNLDVTAYSAVVDGLCKDGMVFEAL 186
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L S ++ G +P+ F YN ++ G
Sbjct: 187 DLFSQMTGKGIQPNLFTYNCLIHG 210
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++FTYN L+ LC + M GI P++ T+ ++ T +
Sbjct: 195 KGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRK-GIMPDVQTFNVIAGRFLKTGMIS 253
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + S + G + + YN+I+ +
Sbjct: 254 RAKSIFSFMGHMGIEHNVVTYNSIIGAH 281
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +N L + K + TT + + M + +G+KPN+ T+ I+I+ +C +
Sbjct: 24 PCVKDFNLLFGIVAKMKHYTTAISLIKHM-SYIGVKPNVSTHNIVINCLCRLNHTVFGFS 82
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G +P + TI+ G
Sbjct: 83 VLGLMFKIGVEPSIVTFTTIVNG 105
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N +V LCK + V F+ Q++ G+ P++VTY LI + + EA L
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEK-GVYPDIVTYNTLISAYSSKGLMEEAFEL 292
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++A+ GF P + YNT++ G
Sbjct: 293 MNAMPGKGFSPGVYTYNTVING 314
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P +Y+ LV LC L + D+M S IKP ++ +I C +
Sbjct: 541 MVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM-ISKNIKPTVMICNSMIKGYCRSG 599
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N + + + GF PDC YNT++ G+
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGF 630
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN ++ LCK + L ++M + P+ T TILID C NL+ AM L
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEM-TERALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + + D YNT++ G+
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGF 525
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+FTYN ++ C+ + + +M G+ P+ TYT +I+ + NL EA
Sbjct: 653 LVPDVFTYNSILHGFCRQNQMKEAEVVLRKM-IERGVNPDRSTYTCMINGFVSQDNLTEA 711
Query: 66 MRLVSALSDSGFKPD 80
R+ + GF PD
Sbjct: 712 FRIHDEMLQRGFSPD 726
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ D+ TYN L+ K + T M S I P ++Y+IL++ +C+ +L
Sbjct: 509 KRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM-VSKEILPTPISYSILVNALCSKGHLA 567
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA R+ + KP + N+++KGY
Sbjct: 568 EAFRVWDEMISKNIKPTVMICNSMIKGY 595
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-IKPNLVTYTILIDNVCNT 59
+I + PD +YN L+ + +++ + V +M G + P++ TY ++ C
Sbjct: 611 MISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQ 670
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + + G PD Y ++ G+
Sbjct: 671 NQMKEAEVVLRKMIERGVNPDRSTYTCMINGF 702
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI TYN L+ + + ++ M G P + TY +I+ +C
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK-GFSPGVYTYNTVINGLCKHGKYE 322
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A + + + SG PD Y +++
Sbjct: 323 RAKEVFAEMLRSGLSPDSTTYRSLL 347
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L++ C+ ++ N ++M G ++VTY ++ +C K L EA
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ-GCAMDVVTYNTILHGLCKRKMLGEA 464
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + +++ PD + ++ G+
Sbjct: 465 DKLFNEMTERALFPDSYTLTILIDGH 490
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P ++TYN ++ LCK +M S G+ P+ TY L+ C ++
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKGDVV 357
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E ++ S + PD ++++M
Sbjct: 358 ETEKVFSDMRSRDVVPDLVCFSSMM 382
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ ++ ++ + +L + + ++ + G+ P+ V YTILI C +
Sbjct: 369 RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA-GLIPDNVIYTILIQGYCRKGMIS 427
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM L + + G D YNTI+ G
Sbjct: 428 VAMNLRNEMLQQGCAMDVVTYNTILHG 454
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L + + + ++ S G+ N+ T I+++ +C + + +S +
Sbjct: 204 NALIGSLVRIGWVELAWGVYQEISRS-GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ 262
Query: 74 DSGFKPDCFVYNTIMKGY 91
+ G PD YNT++ Y
Sbjct: 263 EKGVYPDIVTYNTLISAY 280
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ P + TY LV LCK ++ ++ M + G PN+VTY LI+ C N+
Sbjct: 96 RHCAPSVITYTILVDALCKSARISDASLILEDMIEA-GCAPNVVTYNTLINGFCKLGNMD 154
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + + ++ PD F YN ++ GY
Sbjct: 155 EAVVLFNQMLENSCSPDVFTYNILIDGY 182
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ TYN +V LCK + Y + +R G ++VT + LID +C ++ L +A
Sbjct: 309 PPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNG-GYFLDVVTCSTLIDGLCKSRRLDDAE 367
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+L+ + +G PD Y ++ G+
Sbjct: 368 KLLREMERNGSAPDVVAYTILIHGF 392
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P FT+N ++ CK L Y Q+ G P++ TY I+I C
Sbjct: 233 MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELF-QLMTDRGCLPDIYTYNIMISGACRAN 291
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A +L+ ++++G PD YN+I+ G
Sbjct: 292 RIDDARQLLERMTEAGCPPDVVTYNSIVSG 321
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 35/118 (29%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI------------------------- 42
PD TY+ L+ CK R Y +D+M GI
Sbjct: 31 PDSITYSTLINGFCKARDFQQAYRLLDEMEKR-GIVPHNAVYNTIIKGLCDNGRVDSALV 89
Query: 43 ---------KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
P+++TYTIL+D +C + + +A ++ + ++G P+ YNT++ G+
Sbjct: 90 HYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGF 147
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I P++ TYN L+ CK ++ +QM + P++ TY ILID C +
Sbjct: 128 MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLEN-SCSPDVFTYNILIDGYCKQE 186
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +L+ + G +P+ YNT+M
Sbjct: 187 RPQDGAKLLQEMVKYGCEPNFITYNTLM 214
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+ TYN L+ L K +N QM KP+ T+ ++ID C L A
Sbjct: 204 EPNFITYNTLMDSLVKSGKYIDAFNLA-QMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAY 262
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L ++D G PD + YN ++ G
Sbjct: 263 ELFQLMTDRGCLPDIYTYNIMISG 286
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ T + L+ LCK R L + +M + G P++V YTILI C L +++
Sbjct: 346 DVVTCSTLIDGLCKSRRLDDAEKLLREMERN-GSAPDVVAYTILIHGFCKADQLDKSLAF 404
Query: 69 VSALSDSGFKPDCFVYNTIM 88
S + D G P Y+ ++
Sbjct: 405 FSEMLDKGCVPTVITYSIVI 424
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTYN L+ CK + +M G +PN +TY L+D++ + +A
Sbjct: 170 PDVFTYNILIDGYCKQERPQDGAKLLQEM-VKYGCEPNFITYNTLMDSLVKSGKYIDAFN 228
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + KP F +N ++
Sbjct: 229 LAQMMLRRDCKPSHFTFNLMI 249
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ Y L+ CK L F +M G P ++TY+I+ID +C + +R+
Sbjct: 379 APDVVAYTILIHGFCKADQLDKSLAFFSEM-LDKGCVPTVITYSIVIDKLCKSARVRDGC 437
Query: 67 RLVSALSDSG 76
L+ + + G
Sbjct: 438 MLLKTMLERG 447
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ TYN L+ LCK L ++ +D+M G+KP+ +TYT LID C
Sbjct: 267 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMK-GLKPDKITYTTLIDGXCKEG 325
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A + + D Y ++ G
Sbjct: 326 DLETAFEYRKRMIKENIRXDDVAYTALISG 355
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY+ L+ LCK + D+M + G+ PN VT+T LID C + AM
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLBN-GLVPNXVTFTTLIDGHCKNGRVDLAME 262
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + PD YNT++ G
Sbjct: 263 IYRQMLSQSLLPDLITYNTLIYG 285
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ K L + M+AS G+ P++ TY++LI+ +C + +A
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQAS-GVHPDVYTYSVLINGLCKESKMDDA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + B+G P+ + T++ G+
Sbjct: 226 NELFDEMLBNGLVPNXVTFTTLIDGH 251
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D + G++P++V++ L++ +L E
Sbjct: 133 PASLYFFNILMHXFCKEGEIRLAQSVFDSI-TKWGLRPSVVSFNTLMNGYIKIGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL S + SG PD + Y+ ++ G
Sbjct: 192 RLKSVMQASGVHPDVYTYSVLING 215
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY L+ CK L T + + +M I+ + V YT LI +C
Sbjct: 305 KGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKE-NIRXDDVAYTALISGLCQEGRSV 363
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A +++ + G KP+ Y I+
Sbjct: 364 DAEKMLREMLSVGLKPEIGTYTMII 388
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D Y L+ LC+ + +M S+G+KP + TYT++I+ C
Sbjct: 337 MIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREM-LSVGLKPEIGTYTMIINEXCKKG 395
Query: 61 NLREAMRLVSALSDSGFKPD 80
++ +L+ + G+ P+
Sbjct: 396 DVWTGSKLLKEMQRXGYVPN 415
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+++ L K + V+ F ++ G +L + IL+ C +R A + +++
Sbjct: 107 VIEHLMKLKYFKLVWGFYEE-SLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKW 165
Query: 76 GFKPDCFVYNTIMKGY 91
G +P +NT+M GY
Sbjct: 166 GLRPSVVSFNTLMNGY 181
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVTY I+I +N A
Sbjct: 480 LTPDTFTYSVMINCLGKAGHLNAAHRLFCRM-VDEGCVPNLVTYNIMIALQAKARNYEIA 538
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + SGF+PD Y +M+
Sbjct: 539 LKLYRDMQQSGFEPDKVTYCIVME 562
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ + L N QM+ + G +P+ VTY LID + L AM
Sbjct: 412 PNVVTYNRIIHSYGRANYLQDAVNVFKQMQEA-GCEPDRVTYCTLIDIHAKSGFLDVAMG 470
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + D+G PD F Y+ ++
Sbjct: 471 MYEKMQDAGLTPDTFTYSVMI 491
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 3 FKQLPP---DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
K+LP D TY ++ L + + + +DQM G +PN+VTY +I +
Sbjct: 369 LKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKD-GCQPNVVTYNRIIHSYGRA 427
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIM 88
L++A+ + + ++G +PD Y T++
Sbjct: 428 NYLQDAVNVFKQMQEAGCEPDRVTYCTLI 456
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+FKQ+ PD TY L+ K L ++M+ + G+ P+ TY+++I+ +
Sbjct: 436 VFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDA-GLTPDTFTYSVMINCL 494
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L A RL + D G P+ YN ++
Sbjct: 495 GKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMI 526
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ M+ S G +P+ VTY I+++ + + L EA
Sbjct: 517 PNLVTYNIMIALQAKARNYEIALKLYRDMQQS-GFEPDKVTYCIVMEVLGHCGFLEEAEG 575
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + PD VY ++
Sbjct: 576 IFIEMQKKNWVPDEPVYGLLV 596
>gi|255661018|gb|ACU25678.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 376
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK Y+ V +M G P ++TY++LI +C + + A+
Sbjct: 197 PTIITYNTLINGLCKAERFGEAYDLVKEMLEK-GWNPCVITYSLLIKGLCLGRKVEMALH 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + + GFKPD ++N ++ G
Sbjct: 256 LWNQVINKGFKPDVQMHNILIHG 278
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+I K PD+ +N L+ LC ++ + + D R + PNLVT+ L++
Sbjct: 260 VINKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWNCA--PNLVTHNTLMZGFYKD 317
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++R A+ + + +G +PD YN +KG
Sbjct: 318 GDIRNALATWARILRNGVQPDIISYNITLKG 348
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F Y+ ++ LCK L + ++ M G PN Y LI+ + +A+R+
Sbjct: 128 DAFAYSAMINWLCKDSKLDKAVSVLNGM-IKXGCMPNAHVYNALINGLVGASKFEDAIRV 186
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ ++ P YNT++ G
Sbjct: 187 FQEMGNTHCSPTIITYNTLING 208
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++P PD +TY L+ LCK +M G P++VTY+ L+ +
Sbjct: 178 IFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTK-GCSPSVVTYSCLMHGL 236
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C N+ EAM L + +P+ F Y+++M G
Sbjct: 237 CQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDG 270
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++FTY+ L+ LCK ++ M KPN+VTY+ LI+ +C L
Sbjct: 255 KAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRH-KPNMVTYSTLINGLCKEGKLA 313
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ + + G KPD +Y I+ G+
Sbjct: 314 EAVETLDRMKLQGLKPDAGLYGKIINGF 341
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K+ P++ TY+ L+ LCK L +D+M+ G+KP+ Y +I+ CN +
Sbjct: 287 MVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQ-GLKPDAGLYGKIINGFCNIR 345
Query: 61 NLREA 65
+EA
Sbjct: 346 KFQEA 350
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-IKPNLVTYTI-------LIDNVC 57
L PD Y ++ C R ++D+M LG I PN VT+++ ++ +C
Sbjct: 327 LKPDAGLYGKIINGFCNIRKFQEAATYLDEM--VLGQISPNRVTWSLHVKLNNMVVQGLC 384
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NL + +L + G D +++++K +
Sbjct: 385 TNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCF 418
>gi|255661016|gb|ACU25677.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 367
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
P + TY+ J+ LCK Y+ V +M G+ P+++TY++LI +C + + +
Sbjct: 194 HFSPTVVTYSXJINGLCKGERFGEAYDLVKEMLDK-GLNPSVITYSLLIKGLCLDRKVDK 252
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A++L + + GFKPD ++N ++ G
Sbjct: 253 ALQLWNQVISKGFKPDVQMHNIMIHG 278
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P + TY+ L+K LC R + +Q+ S G KP++ + I+I +C+
Sbjct: 225 MLDKGLNPSVITYSLLIKGLCLDRKVDKALQLWNQV-ISKGFKPDVQMHNIMIHGLCSVG 283
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ A+ L ++ P+ +NT+M+G+
Sbjct: 284 KMQLALSLYY-MNRWDCAPNLVTHNTLMEGF 313
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD+ +N ++ LC + + R PNLVT+ L++
Sbjct: 260 VISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYYMNRWDCA--PNLVTHNTLMEGFYKDG 317
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++R A+ + + + +G +PD YN +KG
Sbjct: 318 DVRNALVIWARILRNGLQPDIISYNITLKG 347
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D F Y+ ++ LCK L + ++ M + G KPN Y LI+ + +A+R+
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAVSVLNGMIKN-GCKPNAHVYNALINGLVGASKFEDAIRV 186
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + F P Y+ J+ G
Sbjct: 187 LREMGTXHFSPTVVTYSXJING 208
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK L + ++ G+ + Y+ +I+ +C L +A+ +
Sbjct: 93 DSITYGILVHGFCKNGYLNKSIHVLEIAERKGGVL-DAFAYSAMINGLCKEAKLDKAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + +G KP+ VYN ++ G
Sbjct: 152 LNGMIKNGCKPNAHVYNALING 173
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY L LCK L T + +M G++ N+ TY +++ +C N+ +A
Sbjct: 316 LTPNVVTYTALADGLCKSGELDTANELLHEM-CRKGLQLNISTYNTIVNGLCKAGNILQA 374
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++L+ + ++G PD Y T+M Y
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAY 400
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PD TY L+ CK + + +QM +G+ PN+VTYT L D +C +
Sbjct: 276 MIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQM-VQIGLTPNVVTYTALADGLCKSG 334
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A L+ + G + + YNTI+ G
Sbjct: 335 ELDTANELLHEMCRKGLQLNISTYNTIVNG 364
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L +I TYN +V LCK ++ +++M+ + G+ P+ +TYT L+D T +
Sbjct: 349 KGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEA-GLHPDTITYTTLMDAYYKTGEMV 407
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A L+ + D G +P +N +M G
Sbjct: 408 KARELLREMLDRGLQPTVVTFNVLMNG 434
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
FK PD+ +Y ++ C L V V +M+ G+KPNL TY+ +I +C + +
Sbjct: 138 FKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLK-GLKPNLYTYSSIILLLCKSGKV 196
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
E +++ + G PD +Y T++ G+
Sbjct: 197 VEGEKVLREMMKRGVFPDHVIYTTLIDGF 225
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TY L+ K + + +M G++P +VT+ +L++ +C + L +
Sbjct: 386 LHPDTITYTTLMDAYYKTGEMVKARELLREM-LDRGLQPTVVTFNVLMNGLCMSGKLEDG 444
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
RL+ + + G P+ YN+IMK Y
Sbjct: 445 ERLLKWMLEKGIMPNAATYNSIMKQY 470
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P+++TY+ ++ LCK + + +M G+ P+ V YT LID C N
Sbjct: 173 LKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKR-GVFPDHVIYTTLIDGFCKLGNT 231
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +L S + PD ++ ++ G
Sbjct: 232 QAAYKLFSEMEAREIVPDSIAFSALICG 259
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+YN L+ L + + ++ + +M G P++V+YT +ID C+ L++ ++LV
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFK-GCIPDVVSYTTIIDGYCHVGELQKVVQLVKE 170
Query: 72 LSDSGFKPDCFVYNTIM 88
+ G KP+ + Y++I+
Sbjct: 171 MQLKGLKPNLYTYSSII 187
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + T+N L+ LC L + M GI PN TY ++ C N+R
Sbjct: 419 RGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEK-GIMPNAATYNSIMKQYCIRNNMR 477
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G PD YN ++KG+
Sbjct: 478 ISTEIYRGMCAQGVVPDSNTYNILIKGH 505
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD Y L+ CK + Y +M A I P+ + ++ LI + + + EA +
Sbjct: 213 PDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAR-EIVPDSIAFSALICGLSGSGKVVEADK 271
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + GF+PD Y ++ GY
Sbjct: 272 LFNEMIKKGFEPDEVTYTALIDGY 295
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ TYN ++K C R+ + + + + G+ P+ TY ILI C +
Sbjct: 451 MLEKGIMPNAATYNSIMKQYC-IRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKAR 509
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++EA L + + F YN ++KG+
Sbjct: 510 NMKEAWFLHKEMVEKRFNLTASSYNALIKGF 540
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N + CL R + + V LG+ N +Y IL++++ +REA L+ +
Sbjct: 78 NLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRME 137
Query: 74 DSGFKPDCFVYNTIMKGY 91
G PD Y TI+ GY
Sbjct: 138 FKGCIPDVVSYTTIIDGY 155
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ L P YN L+ C+ R L ++ +QM+ S I+P+ +TY LI+ +C +
Sbjct: 361 LVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMK-SRHIRPDHITYNALINGLCKME 419
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA LV + SG P +NT++ Y
Sbjct: 420 MITEAEDLVMEMEKSGVDPSVETFNTLIDAY 450
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + P+ YN ++ + + V++M++S G+ ++ TY +L+ +C
Sbjct: 501 MIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSS-GVSASIFTYNLLLKGLCKNS 559
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA L+ L++ G +PD YNTI+
Sbjct: 560 QIDEAEELIYNLTNQGLRPDVVSYNTII 587
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+Q+ PD TYN L+ LCK +T + V +M S G+ P++ T+ LID
Sbjct: 392 IFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKS-GVDPSVETFNTLIDAY 450
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L + ++S + D G K + + +++K +
Sbjct: 451 GRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAF 485
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD F+YN ++ L + + D+M G+ PN +TY +ID +L
Sbjct: 192 PPDAFSYNVVIAGLWRSGKGSDALKVFDEM-VDRGVAPNQITYNTMIDGHVKGGDLEAGF 250
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL + G KP+ YN ++ G
Sbjct: 251 RLRDQMLQDGRKPNVVTYNVLLSG 274
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P+ TYN ++ K L + DQM G KPN+VTY +L+ +C
Sbjct: 221 MVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQD-GRKPNVVTYNVLLSGLCRAG 279
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E L+ ++ PD F Y+ + G
Sbjct: 280 RMDETRALMDEMTSYSMLPDGFTYSILFDG 309
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 10 IFTYNFLVKCLCKCRSLTT----VYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
IFTYN L+K LCK + +YN +Q G++P++V+Y +I CN + A
Sbjct: 545 IFTYNLLLKGLCKNSQIDEAEELIYNLTNQ-----GLRPDVVSYNTIISACCNKGDTDRA 599
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ L+ + +P Y+ ++
Sbjct: 600 LELLQEMHKYDIRPTLRTYHPLL 622
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + ++ ++ +VK CK + +D M + PN Y +ID +
Sbjct: 469 KGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM-IHKDVVPNAQVYNSIIDAYIESGGTE 527
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A LV + SG F YN ++KG
Sbjct: 528 QAFLLVEKMKSSGVSASIFTYNLLLKG 554
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD FTY+ L L + S T + F + ++ G+ T +IL++ +C + +A
Sbjct: 298 PDGFTYSILFDGLTRTGDSRTMLSLFGESLKK--GVIIGAYTCSILLNGLCKDGKVAKAE 355
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ L +G P +YNT++ GY
Sbjct: 356 QVLEMLVHTGLVPTTAIYNTLINGY 380
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T + L+ LCK + V +M G+ P Y LI+ C ++L+ A +
Sbjct: 336 YTCSILLNGLCKDGKVAKAEQ-VLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFE 394
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ +PD YN ++ G
Sbjct: 395 QMKSRHIRPDHITYNALING 414
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAM 66
PD F +N V+ L + +M S G P + +Y ++I + + +A+
Sbjct: 156 PDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 215
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + D G P+ YNT++ G+
Sbjct: 216 KVFDEMVDRGVAPNQITYNTMIDGH 240
>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++FT N LVK LCK + +++M A +G PN+VTYT ++ + ++ A R
Sbjct: 239 PNVFTCNILVKALCKKNDIDAAIRVLEEMPA-MGFIPNVVTYTTILGGYVSKGDMVGARR 297
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D G+ PD Y +M GY
Sbjct: 298 VFGEILDRGWVPDPTTYTILMDGY 321
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ L + + V+ R GI PN+ T IL+ +C ++ A
Sbjct: 201 LQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+R++ + GF P+ Y TI+ GY
Sbjct: 261 IRVLEEMPAMGFIPNVVTYTTILGGY 286
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TYN L+ +C+ L D M G PN TY +LI C N RE +R
Sbjct: 448 PSTLTYNALIAGMCEGGELPEAARLWDNM-VEKGCVPNAFTYNMLIKGFCKVGNAREGIR 506
Query: 68 LVSALSDSGFKPDCFVY 84
++ + D+G P+ Y
Sbjct: 507 VMEEMLDNGCLPNKATY 523
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K PD + L+ LCK + D+ G P+ +TY LI +C
Sbjct: 407 LLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEK--GSIPSTLTYNALIAGMCEGG 464
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA RL + + G P+ F YN ++KG+
Sbjct: 465 ELPEAARLWDNMVEKGCVPNAFTYNMLIKGF 495
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ CK +D+M + ++PN VTY ++I+ C K E +
Sbjct: 309 PDPTTYTILMDGYCKKGRFMDAVKVMDEMEENR-VEPNDVTYGVIIEAYCKEKKSGEVLN 367
Query: 68 LVSALSDSGFKP 79
L+ + + + P
Sbjct: 368 LLDDMLEKKYIP 379
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 2 IFKQ-----LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I+KQ L PD+ TYN L+ LCK L V++ +D+M + G+KP+ ++YT LID
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMN-GLKPDKISYTTLIDGS 321
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C +L A+ L + + + D Y ++
Sbjct: 322 CKEGDLEIALELRNKMIQESIRLDDVAYTALI 353
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TY+ L+ LCK L ++M + G+ PN VT+T LI C + + AM
Sbjct: 204 PDVYTYSILINGLCKEGKLDEANELFNEMLDN-GLVPNGVTFTTLIHGHCKNEKVDLAME 262
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + G PD YNT++ G
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYG 285
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ K L + M AS G +P++ TY+ILI+ +C L EA
Sbjct: 167 LRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHAS-GAQPDVYTYSILINGLCKEGKLDEA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + D+G P+ + T++ G+
Sbjct: 226 NELFNEMLDNGLVPNGVTFTTLIHGH 251
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L++ CK + + D + G++P++V++ LI+ +L E
Sbjct: 133 PASLYFFNILMQRFCKEGEMRLAQSVFDAI-TKWGLRPSVVSFNTLINGYIKLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ SG +PD + Y+ ++ G
Sbjct: 192 RLKSAMHASGAQPDVYTYSILING 215
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ L+ CK + QM S G+ P+L+TY LI +C L++
Sbjct: 237 LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM-LSQGLSPDLITYNTLIYGLCKKGELKQV 295
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ + +G KPD Y T++ G
Sbjct: 296 HDLIDEMIMNGLKPDKISYTTLIDG 320
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D Y L+ CLC+ + +M S+G+KP+ TYT++I+ C +
Sbjct: 337 MIQESIRLDDVAYTALISCLCREGRAGDAEKMLREM-LSVGLKPDNGTYTMIINEFCKKR 395
Query: 61 NLREAMRLVSALSDSGFKP 79
+ + A +L+ + G P
Sbjct: 396 DSKTASKLLREMQRDGPVP 414
>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
Length = 348
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY ++ +CK + + + + +M +KP +VTY ++ID++C N EA+
Sbjct: 219 PDQFTYGPILNRICKSGNTVSALDLLRKMEDK-KVKPQVVTYNMIIDSLCKNGNYDEALS 277
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G K D YN+++ G+
Sbjct: 278 LFNEMEREGIKADVITYNSLIGGF 301
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T++ LV LC ++ VD+M + ++PNLVT L++ +C + EA
Sbjct: 148 EPDTVTFSTLVNGLCLEGRVSEAVVIVDRM-VEMKVRPNLVTLNTLVNGLCLKDQVSEAE 206
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
LV + + G +PD F Y I+
Sbjct: 207 ALVDRMVEHGCQPDQFTYGPIL 228
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++ P++ T N LV LC ++ VD+M G +P+ TY +++ +C +
Sbjct: 177 MVEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRM-VEHGCQPDQFTYGPILNRICKSG 235
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N A+ L+ + D KP YN I+
Sbjct: 236 NTVSALDLLRKMEDKKVKPQVVTYNMII 263
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + I+T + ++ C C+ R L ++ + ++ LG +P+ VT++ L++ +C +
Sbjct: 109 LQGIAHSIYTLSIVINCFCRRRKLGFAFSVLGKI-LKLGYEPDTVTFSTLVNGLCLEGRV 167
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ +V + + +P+ NT++ G
Sbjct: 168 SEAVVIVDRMVEMKVRPNLVTLNTLVNG 195
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ P + TYN ++ LCK + + ++M GIK +++TY LI CN
Sbjct: 250 KKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMERE-GIKADVITYNSLIGGFCNAGRWD 308
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+ +L+ + P+ ++ ++
Sbjct: 309 DGAQLLRDMITRNITPNVVTFSALI 333
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ TYN L+ LCK L + +D+MR G+KP+ ++YT LID C
Sbjct: 271 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMK-GLKPDKISYTTLIDGCCKEG 329
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A + + D Y ++ G
Sbjct: 330 DLETAFEHRKRMIQENIRLDDVAYTALISG 359
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ CK + + D + G++P++V++ L++ +L E
Sbjct: 137 PASLYFFNILMHRFCKEGDIRVALSVFDAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGF 195
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL SA+ SG +PD + Y+ ++ G
Sbjct: 196 RLKSAMHASGVQPDVYTYSVLING 219
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P+ T+ L+ CK + QM S + P+L+TY LI +C
Sbjct: 236 MLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQM-LSQSLSPDLITYNTLIYGLCKKG 294
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L++A L+ + G KPD Y T++ G
Sbjct: 295 DLKQAQDLIDEMRMKGLKPDKISYTTLIDG 324
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ + L + M AS G++P++ TY++LI+ +C + +A
Sbjct: 171 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDDA 229
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + D G P+ + T++ G+
Sbjct: 230 NELFDEMLDKGLVPNGVTFTTLIDGH 255
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D Y L+ LC+ + +M S+G++P+ TYT++I+ C
Sbjct: 341 MIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREM-LSVGLRPDTGTYTMIINEFCKKG 399
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +L+ + G P YN +M G
Sbjct: 400 DVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+++ L K + V+ F ++ G +L + IL+ C ++R A+ + A++
Sbjct: 111 VLEHLMKLKYFKLVWXFYKEI-LECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKW 169
Query: 76 GFKPDCFVYNTIMKGY 91
G +P +NT+M GY
Sbjct: 170 GLRPSVVSFNTLMNGY 185
>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Glycine max]
Length = 466
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I +N L+ LCKC + +MR + +KPN TY I + C +N M+
Sbjct: 130 PEINAFNLLLDALCKCCLVEDAETLYKKMRKT--VKPNAETYNIFVFGWCRVRNPTRGMK 187
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G +PD F YNT + Y
Sbjct: 188 LLEEMVELGHRPDNFAYNTAIDTY 211
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY +++ +C C + Y F+++M + +P++VTY + +C+ K +A++
Sbjct: 272 PDVTTYKEIIEGMCVCGKIDEAYKFLEEM-GNKSYRPDIVTYNCFLKVLCDNKKSEDALK 330
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L + + P YN ++
Sbjct: 331 LYGRMIELNCIPSVQTYNMLI 351
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMR--ASLGIKPNLVTYTILIDNVCNTKNLREA 65
PD F YN + CK +T + + MR S P TY I+I + + E
Sbjct: 199 PDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVALAQHDRMEEC 258
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+L+ + SG PD Y I++G
Sbjct: 259 FKLIGHMISSGCLPDVTTYKEIIEG 283
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P TY ++ L + + + + M +S G P++ TY +I+ +C + EA +
Sbjct: 237 PTAKTYAIIIVALAQHDRMEECFKLIGHMISS-GCLPDVTTYKEIIEGMCVCGKIDEAYK 295
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + + ++PD YN +K
Sbjct: 296 FLEEMGNKSYRPDIVTYNCFLK 317
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PDI TYN +K LC + +M L P++ TY +LI +
Sbjct: 303 KSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRM-IELNCIPSVQTYNMLISMFFEIDDPD 361
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + G +PD Y+ ++ G
Sbjct: 362 GAFETWQEMDNRGCRPDIDTYSVMIDG 388
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ P TYN L+ CK ++ + +M +S G++PN++T++ LID C +N++
Sbjct: 437 ERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSS-GVEPNIITFSTLIDGYCKVRNIK 495
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
AM L ++ G PD Y T++ +
Sbjct: 496 AAMGLYFEMTIKGIVPDVVTYTTLIDAH 523
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+FTY L+ LC L +M+ I P+ VTY LI C N+ +A
Sbjct: 404 LSPDVFTYTILINGLCTEERLAEANRLFQRMKNE-RIFPSSVTYNSLIHGFCKEYNIEKA 462
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L S ++ SG +P+ ++T++ GY
Sbjct: 463 LDLCSEMTSSGVEPNIITFSTLIDGY 488
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +L P++ + LV CK R L + M G+ PNL Y LI C +
Sbjct: 329 ILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHM-VKFGVDPNLYVYNCLIHGQCKSG 387
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ EAM L+S + PD F Y ++ G
Sbjct: 388 NMLEAMGLLSEMESLNLSPDVFTYTILING 417
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PD+ Y+ L +C K + +D+M SLG+KPN+ YTI I ++C
Sbjct: 224 MISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEM-TSLGVKPNVYIYTIYIRDLCREN 282
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G P+ + Y+ ++ GY
Sbjct: 283 KMEEAEKMFELMKIHGVVPNLYTYSAMIDGY 313
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++ YN L+ CK ++ + +M SL + P++ TYTILI+ +C + L EA R
Sbjct: 371 PNLYVYNCLIHGQCKSGNMLEAMGLLSEME-SLNLSPDVFTYTILINGLCTEERLAEANR 429
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + P YN+++ G+
Sbjct: 430 LFQRMKNERIFPSSVTYNSLIHGF 453
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+I T++ L+ CK R++ +M GI P++VTYT LID N++EA
Sbjct: 474 VEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIK-GIVPDVVTYTTLIDAHFKEANMKEA 532
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+RL S + ++G P+ + ++ G+
Sbjct: 533 LRLYSDMLEAGIHPNDHTFACLVDGF 558
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+++ Y ++ LC+ + + M+ G+ PNL TY+ +ID C T NLR+A
Sbjct: 264 VKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIH-GVVPNLYTYSAMIDGYCKTGNLRQA 322
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + + P+ V+ T++ G+
Sbjct: 323 YGLYKEILVAELLPNVVVFGTLVDGF 348
>gi|255661000|gb|ACU25669.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 376
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK Y+ V +M G+ P+++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYDLVKEMLEK-GLNPSVITYSMLMKGLCLDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + GFKPD ++N ++ G
Sbjct: 256 LWNQVISKGFKPDVQMHNILIHG 278
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+I K PD+ +N L+ LC K + ++Y +++ + + PNLVT+ L++
Sbjct: 260 VISKGFKPDVQMHNILIHGLCSVGKTQRALSLYFXMNRWKCA----PNLVTHNTLMEGFY 315
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++R A+ + + + +G +PD YN +KG
Sbjct: 316 KDGDIRNALVIWARVLRNGLEPDIISYNITLKG 348
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL +A+ +
Sbjct: 93 DSITYGILVHGFCKNGXINKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDKAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNDMIKSGCKPNAHVYNTLING 173
>gi|255660998|gb|ACU25668.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 376
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I TYN L+ LCK Y+ V +M G+ P+++TY++L+ +C + A++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYDLVKEMLEK-GLNPSVITYSMLMKGLCLDHKVERALQ 255
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + GFKPD ++N ++ G
Sbjct: 256 LWNQVISKGFKPDVQMHNILIHG 278
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
+I K PD+ +N L+ LC ++ + ++D R PNLVT+ L++
Sbjct: 260 VISKGFKPDVQMHNILIHGLCSVGKTQLALSLYJDMNRWKCA--PNLVTHNTLMEGFYKD 317
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++R A+ + + + +G +PD YN +KG
Sbjct: 318 GDIRNALVIWARVLRNGLEPDIISYNITLKG 348
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY LV CK + + ++ G+ + Y+ +I+ +C NL +A+ +
Sbjct: 93 DSITYGILVHGFCKNGYINKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDKAVSV 151
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ + SG KP+ VYNT++ G
Sbjct: 152 LNDMIKSGCKPNAHVYNTLING 173
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD F YN +V L K + VD M+ + I P+L TYT L+D + + L EA
Sbjct: 699 LVPDTFVYNIMVNGLVKSNRVDEACKLVDSMK-NQNILPDLFTYTSLLDGLGKSGRLEEA 757
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + +++ G +PD Y ++M
Sbjct: 758 FNMFTKMTEEGHEPDVVAYTSLM 780
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+Q PP+I TYN L+ L K L +++M +G P+LVTY ILID V +
Sbjct: 872 RQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEME-KVGCVPDLVTYNILIDGVGKMGMVD 930
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMK 89
EA + + G PD + ++++
Sbjct: 931 EAESYFKRMKEKGIVPDVITFTSLIE 956
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K D+ TY+ ++ CLCK + + +M+ G++P L Y L+ ++ +
Sbjct: 624 MVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEE-GMEPLLGNYKTLLSSLVKDE 682
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A+++ + L +S PD FVYN ++ G
Sbjct: 683 KIDFALQIFNELQESSLVPDTFVYNIMVNG 712
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P + T+ L+ L K ++ F + M+ +L PN+VTYT L++ +
Sbjct: 313 MIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMK-NLRCSPNVVTYTTLVNGLAKAG 371
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L EA + + ++ PD YNT++ G
Sbjct: 372 RLEEACEVFVEMKENNCSPDAIAYNTLIDG 401
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ + K + ++ +M+ GI P+++T+T LI+++ L EA
Sbjct: 911 PDLVTYNILIDGVGKMGMVDEAESYFKRMKEK-GIVPDVITFTSLIESLGKVDKLLEACE 969
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L ++ + G+ P YN ++
Sbjct: 970 LFDSMEEEGYNPSVVTYNVLI 990
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ L K +M+ G+ PNL TY I+I + EA +
Sbjct: 390 PDAIAYNTLIDGLGKAGEADMACGLFKEMK-DRGLVPNLRTYNIMISVLGKAGRQPEAWQ 448
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L L + G PD F YNT++
Sbjct: 449 LFHDLKEQGAVPDVFTYNTLI 469
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+FTY L+ L K L +N +M G +P++V YT L+D + L A+
Sbjct: 736 PDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEE-GHEPDVVAYTSLMDVLGKGGKLSHALI 794
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ A++ PD Y++++
Sbjct: 795 IFRAMAKKRCVPDVVTYSSLI 815
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ T+ L++ L K L D M G P++VTY +LID + +
Sbjct: 942 KGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEE-GYNPSVVTYNVLIDILGRAGKVH 1000
Query: 64 EAMRLVSALSDSGFKPD 80
EA + + G PD
Sbjct: 1001 EAAMIFHEMKVKGCMPD 1017
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ PD+ TY+ L+ L K + Y F + S G PN+ Y+ LID+ +
Sbjct: 802 KRCVPDVVTYSSLIDSLGKEGRVEEAYYFFEN-SISKGCTPNVGVYSSLIDSFGKKGMVD 860
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + P+ YN ++ G
Sbjct: 861 RALELFEEMQRRQCPPNIVTYNNLLSG 887
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + Y L+ L K + ++++ S + P+ Y I+++ + + + EA
Sbjct: 664 MEPLLGNYKTLLSSLVKDEKIDFALQIFNELQES-SLVPDTFVYNIMVNGLVKSNRVDEA 722
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+LV ++ + PD F Y +++ G
Sbjct: 723 CKLVDSMKNQNILPDLFTYTSLLDG 747
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ + ++ M+ I P +VTYT L+D + L EA+ L+
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECI-PTVVTYTTLVDGLGKAGRLDEAVSLLRE 588
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ G +P Y+++M +
Sbjct: 589 MEKQGCEPSVVTYSSLMASF 608
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K P++ Y+ L+ K + ++M+ PN+VTY L+ +
Sbjct: 835 ISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRR-QCPPNIVTYNNLLSGLAKAGR 893
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A +L+ + G PD YN ++ G
Sbjct: 894 LNVAEKLLEEMEKVGCVPDLVTYNILIDG 922
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY ++ CK L+ ++M+ G+ PN TYT LID C N +A
Sbjct: 383 PNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ-GLVPNTNTYTTLIDGHCKAGNFSKAYE 441
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ +S+ GF P+ YN+I+ G
Sbjct: 442 LMELMSNEGFFPNTCTYNSIVDG 464
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ Y+ ++ LCK S+ + +++M + G KPN+ T+T LI +C A
Sbjct: 310 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKN-GWKPNVYTHTSLIHGLCKKGWTERA 368
Query: 66 MRL-VSALSDSGFKPDCFVYNTIMKGY 91
RL + + +KP+ Y ++ GY
Sbjct: 369 FRLFLKLIRSDNYKPNVHTYTAMISGY 395
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++T+ L+ LCK + ++ S KPN+ TYT +I C + L A
Sbjct: 347 PNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEM 406
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G P+ Y T++ G+
Sbjct: 407 LFERMKEQGLVPNTNTYTTLIDGH 430
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI Y L+ C+ + D++ LG+ P TYT +I C K + A++
Sbjct: 523 PDIHLYTTLIAAFCRQNMMKDSEKLFDEV-IKLGLAPTKETYTSMICGYCREKKVSLAVK 581
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+SD G PD Y ++ G
Sbjct: 582 FFQKMSDHGCAPDSISYGALISG 604
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN +V LCK + ++ + I+ + VTYTILI C ++ +A+
Sbjct: 453 PNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQN-QIEADGVTYTILISEQCKRADMNQALV 511
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + GF+PD +Y T++ +
Sbjct: 512 FLNKMFKVGFQPDIHLYTTLIAAF 535
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+G+ PNL+ Y+ +I +C ++++A L+ + +G+KP+ + + +++ G
Sbjct: 308 MGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHG 358
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+ D TY L+ CK + F+++M +G +P++ YT LI C +++
Sbjct: 485 QIEADGVTYTILISEQCKRADMNQALVFLNKM-FKVGFQPDIHLYTTLIAAFCRQNMMKD 543
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +L + G P Y +++ GY
Sbjct: 544 SEKLFDEVIKLGLAPTKETYTSMICGY 570
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+ TY L+ CK + + Y ++ M ++ G PN TY ++D +C
Sbjct: 414 QGLVPNTNTYTTLIDGHCKAGNFSKAYELMELM-SNEGFFPNTCTYNSIVDGLCKRGRAE 472
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA +L++ + + D Y ++
Sbjct: 473 EAFKLLNTGFQNQIEADGVTYTILI 497
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TY ++ C+ + ++ F +M + G P+ ++Y LI +C L EA
Sbjct: 556 LAPTKETYTSMICGYCREKKVSLAVKFFQKM-SDHGCAPDSISYGALISGLCKESRLDEA 614
Query: 66 MRLVSALSDSGFKP 79
+L + D G P
Sbjct: 615 RQLYDTMIDKGLSP 628
>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N LV LC+ + + ++ + +++ PN+VTYT +I C + +A+
Sbjct: 251 PDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALS 310
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + +SG +P+ YN ++ GY
Sbjct: 311 VYNDMLESGTRPNTVTYNVLINGY 334
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI ++ PPD+ T++ L+ C+C L +M I+PN+ T++I+I ++C
Sbjct: 350 LILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEM-GQHHIQPNVYTFSIIIHSLCKQN 408
Query: 61 NLREAMRLVSALS-DSGFKPDCFVYNTIM 88
EA+ + L+ + P F+YN ++
Sbjct: 409 RSAEALGFLRELNMRADIAPQTFIYNPVI 437
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +++N ++K +C+ + V++M G P+ +T+ IL+D +C K +
Sbjct: 216 PDGWSFNVVIKGVCRVGNFQKALELVERM-TEFGCSPDTITHNILVDGLCRAKQVNRGHD 274
Query: 68 LVSALSDSGF-KPDCFVYNTIMKGY 91
L+ L G P+ Y +++ GY
Sbjct: 275 LLRRLQRDGVCMPNVVTYTSVISGY 299
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P+++T++ ++ LCK F+ ++ I P Y +ID +C + E
Sbjct: 389 HIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEE 448
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +V+ + + G PD + Y ++ G+
Sbjct: 449 ANLIVTDMEEKGCHPDKYTYTILIIGH 475
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY ++ CK + + + M S G +PN VTY +LI+ ++ A+R
Sbjct: 287 PNVVTYTSVISGYCKAGRMEDALSVYNDMLES-GTRPNTVTYNVLINGYGKALDMESAVR 345
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ L PD +++++ GY
Sbjct: 346 MYRQLILRRCPPDVVTFSSLIDGY 369
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P F YN ++ LCK + V M G P+ TYTILI C + EA
Sbjct: 426 IAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEK-GCHPDKYTYTILIIGHCMKGRIPEA 484
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ L + ++G +PD N+ +
Sbjct: 485 ITLFHKMVETGCRPDKITVNSFI 507
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ K + + Q+ P++VT++ LID C L +AMR
Sbjct: 322 PNTVTYNVLINGYGKALDMESAVRMYRQLILRR-CPPDVVTFSSLIDGYCRCGQLDDAMR 380
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + +P+ + ++ I+
Sbjct: 381 IWKEMGQHHIQPNVYTFSIII 401
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 11 FTYNFLVKCL-CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ YN L+ L + R+ V F ++ L P+ ++ ++I VC N ++A+ LV
Sbjct: 183 YAYNNLLNLLIARGRAQDAVALFESWIQDGL-YSPDGWSFNVVIKGVCRVGNFQKALELV 241
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+++ G PD +N ++ G
Sbjct: 242 ERMTEFGCSPDTITHNILVDG 262
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+PP +Y+ ++ LC+ DQM G P+ V ++ + + N L A
Sbjct: 107 VPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAA 166
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ L++ S G + + + YN ++
Sbjct: 167 VTLLTKASQFGRRIEPYAYNNLL 189
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+K+L P+I TY+ L+ LCK ++ + + G PN++TY I++D +C + +
Sbjct: 386 YKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDG-GPSPNVITYNIMLDALCKIQLV 444
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L + + + G P+ YN ++ GY
Sbjct: 445 DKAIELFNLMFERGLTPNVSSYNILINGY 473
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+++YN L+ CK + + ++M + PN+VTY+ LID +C + + A
Sbjct: 354 ITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYK-KLAPNIVTYSSLIDGLCKSGRISYA 412
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
L SA+ D G P+ YN ++
Sbjct: 413 WELFSAIHDGGPSPNVITYNIML 435
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ LCK + + + M G+ PN+ +Y ILI+ C +K + EAM
Sbjct: 426 PNVITYNIMLDALCKIQLVDKAIELFNLMFER-GLTPNVSSYNILINGYCKSKRIDEAMN 484
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + PD YN ++ G
Sbjct: 485 LFEEMHRRNLVPDSVTYNCLIDG 507
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++TYN L+ LCK L ++ + M G +P+LVT+ L+ C ++ EA +L
Sbjct: 287 NVYTYNILIDALCKKGMLGKAHDMRNLM-IERGQRPDLVTFNTLMSGYCLYNDVVEARKL 345
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
++ G PD + YN ++ GY
Sbjct: 346 FDTFAECGITPDVWSYNILIIGY 368
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P++ +YN L+ CK + + N ++M + P+ VTY LID +C + +
Sbjct: 457 RGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRR-NLVPDSVTYNCLIDGLCKSGRIS 515
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + + D G D YN + +
Sbjct: 516 HAWELFNVMHDGGPPVDVITYNILFDAF 543
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + PD+FTY L+ C V + M + N+ TY ILID +C
Sbjct: 244 VVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDM-VDRNVNLNVYTYNILIDALCKKG 302
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L +A + + + + G +PD +NT+M GY
Sbjct: 303 MLGKAHDMRNLMIERGQRPDLVTFNTLMSGY 333
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ LCK + + +M + ++PN+V Y +++D +C + EA L
Sbjct: 182 DEVTYGTLINGLCKIGLTREAFELLHKMEGQV-VRPNVVIYNMIVDGLCKDGLVTEARDL 240
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
S + G PD F Y ++ G+
Sbjct: 241 YSDVVGRGIDPDVFTYTCLIHGF 263
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN +V LCK +T + + GI P++ TYT LI C RE R
Sbjct: 216 PNVVIYNMIVDGLCKDGLVTEARDLYSDV-VGRGIDPDVFTYTCLIHGFCGLGQWREVTR 274
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + D + + YN ++
Sbjct: 275 LLCDMVDRNVNLNVYTYNILI 295
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T+N L+ C + D A GI P++ +Y ILI C
Sbjct: 314 MIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTF-AECGITPDVWSYNILIIGYCKNN 372
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ L + ++ P+ Y++++ G
Sbjct: 373 RIDEALSLFNKMNYKKLAPNIVTYSSLIDG 402
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +N ++ + K + T + QM GI P++VT +ILI+ C+ ++ A
Sbjct: 76 PSVVEFNMILGSIVKMKHYPTAISLSKQMGLR-GITPSIVTLSILINCYCHLGHMGFAFS 134
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + G++ + TIMKG
Sbjct: 135 VLGMVLKRGYQLNAITLTTIMKG 157
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + P I T + L+ C C + ++ + M G + N +T T ++ +C +
Sbjct: 106 LRGITPSIVTLSILINCYCHLGHMGFAFSVLG-MVLKRGYQLNAITLTTIMKGLCINGEV 164
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R+A+ ++ GF D Y T++ G
Sbjct: 165 RKALEFHDSVVAQGFLLDEVTYGTLING 192
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + PD+ TYN L+ L +M GI PN +TY+ +I+ +C L
Sbjct: 498 FNGVEPDVQTYNILISGLINEGKFLEAEELYKEM-PHRGIVPNTITYSSMINGLCKQSRL 556
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ ++ F PD +NT++ GY
Sbjct: 557 DEATQMFDSMGSKSFSPDVVTFNTLVSGY 585
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P+ TY +V +CK + N + +M IKPN+V Y+ +ID +
Sbjct: 204 MVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDG 263
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L + + + G PD F YN ++ G+
Sbjct: 264 RHSDAHNLYTEMQEKGIFPDLFTYNCMIDGF 294
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TY+ L+ K R D+M GI PN +TY +ID C
Sbjct: 310 MLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPR-GIIPNTITYNSMIDGFCKQN 368
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L A + ++ G PD F +NT++ GY
Sbjct: 369 RLDAAEHMFYVMATKGCSPDVFTFNTLIDGY 399
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 30/117 (25%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSL-----------------------TTVYNFVDQMRASL 40
KQ+P D++++N L+KC C C L T ++ + R S
Sbjct: 106 KQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSE 165
Query: 41 GI-------KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +PN+VT+T L++ +C + EA+ L+ + + G +P+ Y TI+ G
Sbjct: 166 ALDLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 222
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P+ TYN ++ CK L + M A+ G P++ T+ LID C K +
Sbjct: 348 RGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM-ATKGCSPDVFTFNTLIDGYCGAKRID 406
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ ++++G D YNT++ G+
Sbjct: 407 DGTELLHEMTETGLVADTTTYNTLIHGF 434
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+FTYN ++ C + + +M I PN+VTY+ LI+ +
Sbjct: 278 KGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEM-LERKINPNVVTYSALINAYVKERKFF 336
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + G P+ YN+++ G+
Sbjct: 337 EAEELYDEMLPRGIIPNTITYNSMIDGF 364
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D TYN L+ C L + QM +S G+ P++VT L+D +C+ L++A
Sbjct: 420 LVADTTTYNTLIHGFCLVGDLNAALDLSQQMISS-GVCPDIVTCNTLLDGLCDNGKLKDA 478
Query: 66 MRLVSALSDS-----------GFKPDCFVYNTIMKG 90
+ + A+ S G +PD YN ++ G
Sbjct: 479 LEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISG 514
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P++ Y+ ++ L K + +N +M+ GI P+L TY +ID C++ E
Sbjct: 244 HIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEK-GIFPDLFTYNCMIDGFCSSGRWSE 302
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+ + + P+ Y+ ++ Y
Sbjct: 303 AQRLLQEMLERKINPNVVTYSALINAY 329
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 2 IFKQL-PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+F Q+ P++ T+ L+ LC+ + +D+M G++PN +TY ++D +C
Sbjct: 169 LFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQITYGTIVDGMCKIG 227
Query: 61 NLREAMRLVSALSD-SGFKPDCFVYNTIMKG 90
+ A+ L+ + + S KP+ +Y+ I+ G
Sbjct: 228 DTVSALNLLRKMEEMSHIKPNVVIYSAIIDG 258
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+FT+N L+ C + + + +M + G+ + TY LI C +L
Sbjct: 383 KGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTET-GLVADTTTYNTLIHGFCLVGDLN 441
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + SG PD NT++ G
Sbjct: 442 AALDLSQQMISSGVCPDIVTCNTLLDG 468
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL----------GIKPNLVTYTILIDNVC 57
PDI T N L+ LC L M+ S G++P++ TY ILI +
Sbjct: 457 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLI 516
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N EA L + G P+ Y++++ G
Sbjct: 517 NEGKFLEAEELYKEMPHRGIVPNTITYSSMING 549
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD+ T+N LV CK + +M GI + +TY LI N+
Sbjct: 569 KSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEM-GRRGIVADAITYITLIHGFRKVGNIN 627
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A+ + + SG PD +++
Sbjct: 628 GALDIFQEMISSGVYPDTITIRSML 652
>gi|388857670|emb|CCF48819.1| uncharacterized protein [Ustilago hordei]
Length = 1872
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +N ++ L + R D+M +LGIKP VTY +I+ C + + A+
Sbjct: 1071 PSTYLFNAVISKLSRARKTDRALQLFDEMTLNLGIKPTTVTYGAVINACCRIGDEQRAVH 1130
Query: 68 LVSALS-DSGFKPDCFVYNTIMKGY 91
L + DSGFKP YNT+M+ Y
Sbjct: 1131 LFGQMERDSGFKPRVPPYNTMMQYY 1155
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD+ TY + K ++ + +M G+KP+LVTYT+LI C N+
Sbjct: 249 QGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIE 308
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+RL L SGF+ + +Y+ ++
Sbjct: 309 EALRLRRDLLSSGFQLNVILYSVLL 333
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TYN +++C CK + + + +D M ++P TY +LID +C ++
Sbjct: 565 KGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIH-NLEPTPATYNVLIDGLCRYGDVE 623
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A R++ +L D Y T++K +
Sbjct: 624 DADRVLVSLQDRNINLTKVAYTTMIKAH 651
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P + TY ++K LCK R L ++ MRA G+ P+ +TY +I C K++
Sbjct: 529 LKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAK-GLAPDQITYNTIIQCFCKAKDM 587
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
R+A L+ + +P YN ++ G
Sbjct: 588 RKAFELLDDMLIHNLEPTPATYNVLIDG 615
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TY L+ C+ ++ ++ + +M I+P +VTYT++I +C + L E+
Sbjct: 497 LEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLK-DIEPTVVTYTVVIKGLCKQRKLEES 555
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L+ + G PD YNTI++
Sbjct: 556 VQLLEDMRAKGLAPDQITYNTIIQ 579
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
LI L PD+ YN ++ K + ++R I P++VT+ LI C +
Sbjct: 422 LIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDK-AITPSIVTFNSLIYGFCKNR 480
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL+ ++ G +P Y T+M Y
Sbjct: 481 KVVEARRLLESIKLHGLEPSAVTYTTLMNAY 511
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ Y+ L+ LCK + + +M A+ ++P+LVTY+ILI +C +++A++L
Sbjct: 325 NVILYSVLLSSLCKRGQVDEALQLLYEMEAN-NLQPDLVTYSILIHGLCKQGKVQQAIQL 383
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + P+ F ++ I+KG
Sbjct: 384 YKEMCFNRIFPNSFAHSGILKG 405
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+ P + ++N ++ CK L V M GI P+ +Y ILI + ++
Sbjct: 179 KEFAPSVVSFNTIMSRYCKL-GLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSME 237
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+ L + + G +PD Y + KG+
Sbjct: 238 EALELTNDMEKQGLQPDMVTYKIVAKGF 265
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TY L+ C+ ++ + +S G + N++ Y++L+ ++C + EA
Sbjct: 287 LKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSS-GFQLNVILYSVLLSSLCKRGQVDEA 345
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++L+ + + +PD Y+ ++ G
Sbjct: 346 LQLLYEMEANNLQPDLVTYSILIHG 370
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD ++YN L+ L S+ + M G++P++VTY I+ + A
Sbjct: 218 PDTYSYNILIHGLIVAGSMEEALELTNDMEKQ-GLQPDMVTYKIVAKGFHLLGLMSGARE 276
Query: 68 LVSA-LSDSGFKPDCFVYNTIMKGY 91
++ L+D G KPD Y ++ G+
Sbjct: 277 IIQKMLTDEGLKPDLVTYTVLICGH 301
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ TY+ L+ LCK + +M + I PN ++ ++ +C L +A
Sbjct: 357 LQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFN-RIFPNSFAHSGILKGLCEKGMLSDA 415
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L S +PD +YN ++ GY
Sbjct: 416 RMYFDSLIMSNLRPDVTLYNIMIDGY 441
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P I TYN L+ L + VYN + G + T +I++D +C R
Sbjct: 112 QNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDS----GTPQSARTSSIIVDGLCGQSRFR 167
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ + F P +NTIM Y
Sbjct: 168 DAVLFLRQNDGKEFAPSVVSFNTIMSRY 195
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DIFT+N L+ +CK + + + MR I PN+VTY+ +ID EA+ L
Sbjct: 340 DIFTFNTLIDAVCKGGQMELAASIMTTMRGK-NISPNVVTYSTMIDGYGKLGCFEEAISL 398
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ +SG +PD YNT++ Y
Sbjct: 399 YHDMKESGVRPDRVSYNTLIDIY 421
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ TY+ L+ K V N + + + G+KP++V Y+ LID+ C + +A
Sbjct: 477 LVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRA-GLKPDVVLYSSLIDSCCKCGLVEDA 535
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ L+ ++ +G +P+ YN+++ Y
Sbjct: 536 VVLLQEMTQAGIQPNIVTYNSLIDAY 561
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L D+ TYN L+ K D+M+ G+ PN++TY+ LID+ ++
Sbjct: 442 LKADVVTYNALIDAYGKQGKYKDAACLFDKMKGE-GLVPNVLTYSALIDSYSKAGMHQDV 500
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + +G KPD +Y++++
Sbjct: 501 SNVFTEFKRAGLKPDVVLYSSLI 523
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY+ ++ K + M+ S G++P+ V+Y LID
Sbjct: 370 KNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKES-GVRPDRVSYNTLIDIYAKLGRFD 428
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ + G K D YN ++ Y
Sbjct: 429 DALIACKDMERVGLKADVVTYNALIDAY 456
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 9 DIFTYNFLVKCLCK---CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK--NLR 63
+++ Y+ +V + CR V+ Q G KPNL+TY +ID C +L+
Sbjct: 234 NVYAYSAMVSAYGRSGRCREALKVF----QAMKKAGCKPNLITYNTIID-ACGKGGVDLK 288
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+A+ + + G +PD +N+++
Sbjct: 289 QALDIFDEMQKEGVEPDRITFNSLI 313
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N L+ +C L V GI+ ++ T+ LID VC + A
Sbjct: 304 PDRITFNSLI-AVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAAS 362
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + P+ Y+T++ GY
Sbjct: 363 IMTTMRGKNISPNVVTYSTMIDGY 386
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN L+ K M +G+K ++VTY LID ++A
Sbjct: 409 PDRVSYNTLIDIYAKLGRFDDALIACKDME-RVGLKADVVTYNALIDAYGKQGKYKDAAC 467
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G P+ Y+ ++ Y
Sbjct: 468 LFDKMKGEGLVPNVLTYSALIDSY 491
>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Brachypodium distachyon]
Length = 714
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ L K + D+MRA G+ P+L+TY LI+ C NL++A+
Sbjct: 333 PTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAK-GLLPDLITYNSLINGYCKAGNLKQALC 391
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L L +G P YN ++ GY
Sbjct: 392 LFGDLKRAGLGPTVLTYNILIDGY 415
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ LC+ + Y +M G+ PN TYT+LID C N A+R
Sbjct: 613 PNEVTYNVLMHALCRMGRTESAYQHFHEM-LERGLVPNKYTYTLLIDGSCKEGNWVHAIR 671
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD +N + KG+
Sbjct: 672 LYCEMHQKGIHPDHCTHNALFKGF 695
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L PD+ TYN L+ CK +L F D RA LG P ++TY ILID C +L
Sbjct: 364 KGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLG--PTVLTYNILIDGYCRLGDL 421
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
A RL +++ PD Y +M G
Sbjct: 422 EGARRLKEEMTEEDCLPDVCTYTILMNG 449
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TYN L+ C+ L ++M + P++ TYTIL++ C +NL
Sbjct: 401 LGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCL-PDVCTYTILMNGSCMVRNLAMV 459
Query: 66 MRLVSALSDSGFKPDCFVYNT 86
+ G +PDCF YNT
Sbjct: 460 RIFFDEMLSKGLEPDCFAYNT 480
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD F YN + ++T + ++M GI + VTY +LID +C T
Sbjct: 466 MLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLR-GISSDTVTYNVLIDGLCKTG 524
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L++A L + G + DC Y ++ +
Sbjct: 525 SLKDAYVLWMKMVTDGLRLDCVTYTCLIHAH 555
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ C+ L N D M AS G+ P++VTYTI I C NL A
Sbjct: 544 DCVTYTCLIHAHCERGRLIEAKNIFDGMVAS-GLSPSVVTYTIFIHTYCRRGNLYLAYGW 602
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + G +P+ YN +M
Sbjct: 603 FRKMLEEGVEPNEVTYNVLM 622
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA-SLGIKPNLVTYTILIDNVCNTKNLREAM 66
P IFTYN L+ CK + + M A + G PN VTY ++I+ + L +A
Sbjct: 227 PSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAA 286
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+LV + S K F YN ++ G
Sbjct: 287 QLVDIMRLSK-KASAFTYNPLITG 309
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P + TY + C+ +L Y + +M G++PN VTY +L+ +C
Sbjct: 571 MVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEE-GVEPNEVTYNVLMHALCRMG 629
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + + G P+ + Y ++ G
Sbjct: 630 RTESAYQHFHEMLERGLVPNKYTYTLLIDG 659
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASL------GIKPNLVTYTILIDNVCNTKNLRE 64
FTYN L+ L +FV++ A L GI P +VTY LID + T N
Sbjct: 301 FTYNPLITGL-------LARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEA 353
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + G PD YN+++ GY
Sbjct: 354 AQVKFDEMRAKGLLPDLITYNSLINGY 380
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 15 FLVKCLCKCRSLTTVYNFVDQMRA------SLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
F+ +C C R L + D MRA LG++P++ TY L+D+ C + +A+ L
Sbjct: 193 FVKECNCVLRVLRDAARW-DDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVAL 251
Query: 69 VSALS--DSGFKPDCFVYNTIMKG 90
+ + +G P+ YN ++ G
Sbjct: 252 LKDMEARAAGCLPNDVTYNVVING 275
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY+ ++ LCK L Y + +MR + G P++VTYT +ID C L EA
Sbjct: 364 PSVVTYSAVIDGLCKADRLDDAYVVLQKMRRA-GCVPDVVTYTAIIDAFCKVGRLDEARE 422
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G D YN +++GY
Sbjct: 423 LFQRMHERGCALDVVAYNILIRGY 446
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FTY L++ CK + N + +M+A+ GI P +VT+ LI +C +A++
Sbjct: 50 PDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAA-GITPTIVTFGSLIRKLCELNFTDKALQ 108
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + D KPD F+Y ++
Sbjct: 109 IFHQMIDMKVKPDAFLYTVVI 129
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I ++ PD F Y ++ LCK L ++ ++M S G P+ VTYT+L+ ++
Sbjct: 113 MIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQS-GCLPDKVTYTVLVHSLFKAC 171
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ ++ + G P+ Y T++ GY
Sbjct: 172 KWEQGHQIFEEMLSKGHSPELVTYATVVNGY 202
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY ++ CK L +M G ++V Y ILI C + EA+
Sbjct: 399 PDVVTYTAIIDAFCKVGRLDEARELFQRMHER-GCALDVVAYNILIRGYCRAAKVDEAIA 457
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ ++ G +P+ +TI+ G
Sbjct: 458 MIEEMAGRGIQPNVVSLSTIVDG 480
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY LV L K + ++M S G P LVTY +++ C + +A+
Sbjct: 155 PDKVTYTVLVHSLFKACKWEQGHQIFEEM-LSKGHSPELVTYATVVNGYCKAGRIDQALS 213
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ L +G P +Y+T++ G
Sbjct: 214 LMRRLKGTGRSPSGSLYSTLIDG 236
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + LV LCK R + +++M + P++VTY+ +ID +C L +A
Sbjct: 328 PGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYV 387
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +G PD Y I+ +
Sbjct: 388 VLQKMRRAGCVPDVVTYTAIIDAF 411
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ YN L++ C+ + +++M A GI+PN+V+ + ++D +C + EA L
Sbjct: 435 DVVAYNILIRGYCRAAKVDEAIAMIEEM-AGRGIQPNVVSLSTIVDGLCKESRVEEARLL 493
Query: 69 VSALS 73
+ ++
Sbjct: 494 MEKMN 498
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +YN ++ LCK ++ +DQ + P + T+L+D +C ++ + EA
Sbjct: 293 PDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCM-PGVPVCTVLVDGLCKSRRVEEACV 351
Query: 68 LVSALSDSGFK-PDCFVYNTIMKG 90
++ + ++G + P Y+ ++ G
Sbjct: 352 ILERMLETGDRAPSVVTYSAVIDG 375
>gi|22128708|gb|AAM92820.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432840|gb|AAP54427.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
Length = 517
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 7 PPDIFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
PPD+ +Y ++ K ++ +T + +D+ I PN+VTY+ +I +C + +
Sbjct: 338 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRR-----ISPNVVTYSSIIAALCKAQAM 392
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+AM +++ + +G PDC YN+I+ GY
Sbjct: 393 DKAMEVLNTMVKNGVMPDCMTYNSILHGY 421
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ C + +MR+ G++PN+VTY L++ +C EA +
Sbjct: 409 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD-GVEPNVVTYRSLMNYLCKNGRCTEARK 467
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G +PD Y T+++GY
Sbjct: 468 IFDSMTKRGLEPDIATYRTLLQGY 491
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ P++ TY+ ++ LCK +++ ++ M + G+ P+ +TY ++ C++
Sbjct: 367 MLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSG 425
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA+ + + G +P+ Y ++M
Sbjct: 426 QPKEAIGTLKKMRSDGVEPNVVTYRSLM 453
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + T+ L+K LC + + + V + L P++ + TIL+ +C+
Sbjct: 258 VIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDEN 317
Query: 61 NLREAMRLVSALSDS---GFKPDCFVYNTIMKGY 91
+EA+ L+ ++D G PD Y T++ G+
Sbjct: 318 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 351
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+ TY+ L+ C C+ L + + + G + +T+ L+ +C K +
Sbjct: 227 EVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKK-GFRVEAITFAPLLKGLCADKRTSD 285
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ PD F ++KG
Sbjct: 286 AMDIVLRRMTELSCMPDVFSCTILLKG 312
>gi|341606819|gb|AEK83512.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + + +
Sbjct: 11 QVPPHXFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGXVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD + ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTXSVVVNG 93
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T + +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTXSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g07740, mitochondrial-like [Cucumis sativus]
Length = 460
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
++L PD+ TYN LV LCK + Y + +M+ G PN TY ++ID CN +
Sbjct: 320 RRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVG-GCDPNAATYRMMIDGYCNAGDFD 378
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM++++A+ SG P + +++ G
Sbjct: 379 GAMKILNAMLMSGHYPHLKTFASLVVG 405
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +YN ++K K N D+M G++P++VTY + +C + A+
Sbjct: 184 PNSVSYNIMIKGWIKKGGWEQACNLFDEMLEK-GVQPSVVTYNSXLGVLCRKGEMDTALC 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +++ G P+ Y +M+G+
Sbjct: 243 LFKNMTEKGHHPNAVTYALLMEGW 266
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y L+ L K ++ + + +++M+ +KP++VTY IL++ +C + +A +++ +
Sbjct: 294 YGVLMTHLGKTGNIDEMESLLNEMKKRR-LKPDVVTYNILVNYLCKEGKVGDAYKVLVKM 352
Query: 73 SDSGFKPDCFVYNTIMKGY 91
G P+ Y ++ GY
Sbjct: 353 QVGGCDPNAATYRMMIDGY 371
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P + TYN + LC+ + T M G PN VTY +L++ C
Sbjct: 212 MLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEK-GHHPNAVTYALLMEGWCFIG 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+EA +L+ + G K Y +M
Sbjct: 271 KYKEAKKLMFDMEFHGCKLRPVNYGVLM 298
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 2 IFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+P + ++N L+ L C + Q +G +PN V+Y I+I
Sbjct: 138 LFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAY-EMGFRPNSVSYNIMIKGW 196
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A L + + G +P YN+ +
Sbjct: 197 IKKGGWEQACNLFDEMLEKGVQPSVVTYNSXL 228
>gi|413948245|gb|AFW80894.1| hypothetical protein ZEAMMB73_865420 [Zea mays]
Length = 573
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C+ L + D M + P+LV++TIL+D +C L++A R
Sbjct: 241 PDVVTYNTLLAGYCRKGRLQDALHLFDVM-PHRRVPPDLVSHTILMDGLCKAWRLKDARR 299
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + G +PD Y+ ++ GY
Sbjct: 300 MFDRMVHGGLRPDAVAYSVLITGY 323
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++PPD+ ++ L+ LCK L D+M G++P+ V Y++LI CN L+
Sbjct: 272 RRVPPDLVSHTILMDGLCKAWRLKDARRMFDRMVHG-GLRPDAVAYSVLITGYCNEGQLK 330
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ ++ SG F +++G+
Sbjct: 331 EARSLLMEMAGSGLLDIAFALRVVVQGH 358
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N LV LC+ Y F++++ G +P++VTY L+ C L++A+
Sbjct: 206 PDARTFNILVAALCRGEDAERAYGFLEELEEQ-GFEPDVVTYNTLLAGYCRKGRLQDALH 264
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + PD + +M G
Sbjct: 265 LFDVMPHRRVPPDLVSHTILMDG 287
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 42 IKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++P+ T+ IL+ +C ++ A + L + GF+PD YNT++ GY
Sbjct: 204 VRPDARTFNILVAALCRGEDAERAYGFLEELEEQGFEPDVVTYNTLLAGY 253
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + YN +V C C+C + + +M S +KPN TY LI +C
Sbjct: 416 PSLQMYNMIVDCFCRCDNPKEALDVKVEM-TSREVKPNYNTYQTLIICLCRLGKSLSGQS 474
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + +S F P+ + ++ G+
Sbjct: 475 VMVEMIESDFHPNEAICTALVCGF 498
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I +N ++ LCK + VD + +G++P++++Y LID C + EA +
Sbjct: 133 PNIVFFNTILCNLCKEGRVMEGQRLVDSIEC-MGVRPDVISYNTLIDGHCLAGTIDEASK 191
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G KP+ F YNT++ GY
Sbjct: 192 LLEGMVSVGLKPNSFSYNTLLHGY 215
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ F+YN L+ CK + + Y+ +M ++ GI P +VTY ++ + TK EA
Sbjct: 201 LKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSN-GITPGVVTYNTILHGLFQTKRFSEA 259
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L + +SG K + YNTI+ G
Sbjct: 260 KELYLNMINSGTKWGIYTYNTILNG 284
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+I ++ LV LC V +M ++GI PN+V + ++ N+C
Sbjct: 91 MINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEM-LNVGIHPNIVFFNTILCNLCKEG 149
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E RLV ++ G +PD YNT++ G+
Sbjct: 150 RVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN L+ C ++ ++ M S+G+KPN +Y L+ C + A
Sbjct: 168 PDVISYNTLIDGHCLAGTIDEASKLLEGM-VSVGLKPNSFSYNTLLHGYCKAGRIDSAYS 226
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + +G P YNTI+ G
Sbjct: 227 LFRKMLSNGITPGVVTYNTILHG 249
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I+TYN ++ LCK + + Q S G++ N++T+TI+I + +AM L
Sbjct: 275 IYTYNTILNGLCKSNCVDEAFKMF-QSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLF 333
Query: 70 SALSDSGFKPDCFVYNTI 87
+A+ +G PD Y +
Sbjct: 334 AAIPANGLVPDVVTYRVV 351
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ +N KC + + ++MR G+ P+ V+Y LID +C
Sbjct: 21 MVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQH-GLSPDAVSYGALIDALCKLG 79
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A + + + G P+ V+++++ G
Sbjct: 80 RVDDAEVKFNQMINEGVTPNIVVFSSLVYG 109
>gi|341606817|gb|AEK83511.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + + +
Sbjct: 11 QVPPHXFS--LVIGGLCKEGKLNEGYAVFENM-IRKGSKPNVAIYTVLIDGYAKSGXVED 67
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD + ++ G
Sbjct: 68 AIRLLHRMIDEGFKPDVVTXSVVVNG 93
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ T + +V LCK + ++ Q G+ N + Y+ LID +
Sbjct: 75 MIDEGFKPDVVTXSVVVNGLCKNGRVEEALDYF-QTCXFNGLAINSMFYSSLIDGLGKAG 133
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA RL +S+ G D + YN ++
Sbjct: 134 RIDEAERLFEEMSEKGCTRDSYCYNALI 161
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD+ TYN L+ LCK L + +D+M G+KP+ +TYT LID C
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMK-GLKPDKITYTTLIDGSCKEG 325
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L A+ + + D Y ++ G
Sbjct: 326 DLETALEYRKRMIKENIRLDDVAYTALISG 355
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++TY+ L+ LCK + D+M + G+ PN VT+T LID C + A
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDN-GLVPNGVTFTTLIDGHCKNGRVVLA 260
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + + PD YNT++ G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYG 285
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ T+ L+ CK + QM S + P+L+TY LI +C +L++A
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVVLAMEIYKQM-LSQSLSPDLITYNTLIYGLCKKGDLKQA 295
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L+ +S G KPD Y T++ G
Sbjct: 296 QDLIDEMSMKGLKPDKITYTTLIDG 320
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + ++N L+ K L + + M+AS G++P++ TY++LI+ +C + +A
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDA 225
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + D+G P+ + T++ G+
Sbjct: 226 NELFDEMLDNGLVPNGVTFTTLIDGH 251
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P ++ +N L+ K + + D + G++P++V++ L++ +L E
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
RL +A+ SG +PD + Y+ ++ G
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLING 215
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL----VTYTILIDNVCN 58
K L PD TY L+ CK L T + +M IK N+ V YT LI +C
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETALEYRKRM-----IKENIRLDDVAYTALISGLCQ 358
Query: 59 TKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+A +++ + G KP+ Y I+
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMII 388
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + D Y L+ LC+ + +M S+G+KP + TYT++I+ C
Sbjct: 337 MIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM-LSVGLKPEIGTYTMIINEFCKKG 395
Query: 61 NLREAMRLVSALSDSGFKP 79
++ +L+ + G+ P
Sbjct: 396 DVWTGSKLLKEMQRDGYVP 414
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.329 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,519,206
Number of Sequences: 23463169
Number of extensions: 38322625
Number of successful extensions: 180912
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3857
Number of HSP's successfully gapped in prelim test: 1526
Number of HSP's that attempted gapping in prelim test: 131465
Number of HSP's gapped (non-prelim): 36897
length of query: 91
length of database: 8,064,228,071
effective HSP length: 61
effective length of query: 30
effective length of database: 6,632,974,762
effective search space: 198989242860
effective search space used: 198989242860
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 69 (31.2 bits)