BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038287
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CCV|A Chain A, Structure Of Helix Pomatia Agglutinin With Zinc And N-
Acetyl-Alpha-D-Galactoseamine (Galnac)
Length = 101
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYN 85
+P +V +I +V ++NLR RL S +S SGFK C+ ++
Sbjct: 43 RPPVVLLSITQLDVEQSQNLRVIARLYS-VSPSGFKASCYTWH 84
>pdb|3PHF|A Chain A, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|C Chain C, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|E Chain E, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|G Chain G, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|I Chain I, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|K Chain K, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|M Chain M, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|O Chain O, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|Q Chain Q, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|S Chain S, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|U Chain U, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|W Chain W, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|Y Chain Y, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|1 Chain 1, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|3 Chain 3, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
pdb|3PHF|5 Chain 5, Crystal Structure Of The Epstein-Barr Virus Gh And Gl
Complex
Length = 653
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 44 PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFV 83
PNL Y +L +C+ + E +R ++ ++SG C++
Sbjct: 422 PNLALYQLLSTALCSALEIGEVLRGLALGTESGLFSPCYL 461
>pdb|1E4I|A Chain A, 2-Deoxy-2-Fluoro-Beta-D-GlucosylENZYME INTERMEDIATE
Complex Of The Beta-Glucosidase From Bacillus Polymyxa
Length = 447
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYN 85
D N K L R+V L+D+G +P C +Y+
Sbjct: 89 DGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYH 120
>pdb|1TR1|A Chain A, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|B Chain B, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|C Chain C, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|D Chain D, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
Length = 447
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 54 DNVCNTKNLREAMRLVSALSDSGFKPDCFVYN 85
D N K L R+V L+D+G +P C +Y+
Sbjct: 89 DGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYH 120
>pdb|1A34|A Chain A, Satellite Tobacco Mosaic VirusRNA COMPLEX
Length = 159
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 3 FKQLPPDIFTYNFL-VKCLCKCRSLTTVYNFVDQ---MRASLG--IKPNLVTYTILIDNV 56
+ QL P + Y+F+ +K L K T + RAS+G I NL T+ DNV
Sbjct: 81 WTQLTPPVNEYSFVRLKPLFKTGDSTEEFEGRASNINTRASVGYRIPTNLRQNTVAADNV 140
Query: 57 CNTK-NLREAMRLVS 70
C + N R+ ++S
Sbjct: 141 CEVRSNCRQVALVIS 155
>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
Length = 359
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
A GIKP T++ID C+ L+EA+ L S
Sbjct: 243 AEKGIKP-----TLIIDAACHPSILKEAVTLAS 270
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 38 ASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFK 78
A L KP VTYT+L+D + +R A+ V+ LS+ F+
Sbjct: 525 ADLAKKPGAVTYTLLLD---HAGGVRSAIT-VARLSEDTFQ 561
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,423,819
Number of Sequences: 62578
Number of extensions: 74752
Number of successful extensions: 274
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 9
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)